Query 001296
Match_columns 1106
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 21:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.5 6E-07 1.3E-11 108.1 66.4 148 125-279 251-401 (880)
2 KOG0161 Myosin class II heavy 99.3 3.3E-05 7.1E-10 100.4 78.3 272 342-628 1119-1397(1930)
3 PRK02224 chromosome segregatio 99.1 0.00015 3.3E-09 87.8 71.3 93 109-205 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.1 0.00032 7E-09 89.4 71.8 77 170-247 576-652 (1311)
5 TIGR00606 rad50 rad50. This fa 99.0 0.00045 9.8E-09 88.1 79.6 76 127-202 396-471 (1311)
6 TIGR02168 SMC_prok_B chromosom 98.8 0.0013 2.9E-08 80.1 82.6 12 78-89 231-242 (1179)
7 COG1196 Smc Chromosome segrega 98.7 0.0047 1E-07 78.4 79.1 93 54-148 216-311 (1163)
8 PRK03918 chromosome segregatio 98.7 0.0035 7.7E-08 76.0 73.5 42 212-253 244-285 (880)
9 TIGR02168 SMC_prok_B chromosom 98.6 0.0063 1.4E-07 74.4 80.4 12 26-37 123-134 (1179)
10 PRK03918 chromosome segregatio 98.4 0.013 2.8E-07 71.2 68.4 15 20-34 32-46 (880)
11 PRK01156 chromosome segregatio 98.4 0.017 3.6E-07 71.1 73.8 37 109-145 148-186 (895)
12 TIGR02169 SMC_prok_A chromosom 98.4 0.018 3.9E-07 71.0 80.1 34 686-719 980-1013(1164)
13 TIGR02169 SMC_prok_A chromosom 98.3 0.033 7.1E-07 68.8 81.3 16 25-40 120-135 (1164)
14 KOG0161 Myosin class II heavy 98.2 0.079 1.7E-06 70.6 82.0 282 36-328 835-1135(1930)
15 PF12128 DUF3584: Protein of u 98.2 0.072 1.6E-06 68.3 67.7 206 479-688 594-809 (1201)
16 PRK01156 chromosome segregatio 98.2 0.053 1.2E-06 66.8 66.2 17 20-36 32-48 (895)
17 KOG1029 Endocytic adaptor prot 97.9 0.019 4.1E-07 70.0 31.4 217 347-587 316-566 (1118)
18 PF10174 Cast: RIM-binding pro 97.9 0.17 3.8E-06 62.7 61.2 324 295-630 181-534 (775)
19 COG0419 SbcC ATPase involved i 97.8 0.19 4.2E-06 62.6 70.2 86 178-263 274-365 (908)
20 COG1196 Smc Chromosome segrega 97.8 0.27 5.9E-06 63.0 75.1 190 25-218 122-342 (1163)
21 PF07888 CALCOCO1: Calcium bin 97.7 0.21 4.4E-06 59.9 41.3 42 685-728 417-458 (546)
22 KOG4674 Uncharacterized conser 97.7 0.51 1.1E-05 62.8 75.8 454 40-528 861-1382(1822)
23 PF01576 Myosin_tail_1: Myosin 97.5 2.5E-05 5.5E-10 95.8 0.0 505 106-694 41-562 (859)
24 COG0419 SbcC ATPase involved i 97.5 0.64 1.4E-05 58.2 71.7 64 475-539 556-619 (908)
25 PF07888 CALCOCO1: Calcium bin 97.2 0.98 2.1E-05 54.4 41.2 96 488-587 353-448 (546)
26 KOG0250 DNA repair protein RAD 96.9 2.1 4.7E-05 54.8 33.6 107 442-548 357-464 (1074)
27 PF00261 Tropomyosin: Tropomyo 96.7 1.1 2.4E-05 48.1 26.1 178 227-417 57-234 (237)
28 PF00261 Tropomyosin: Tropomyo 96.7 0.71 1.5E-05 49.4 24.4 61 233-293 91-151 (237)
29 PF12128 DUF3584: Protein of u 96.5 5 0.00011 52.3 71.5 86 489-574 675-765 (1201)
30 PF10174 Cast: RIM-binding pro 96.4 4.4 9.6E-05 50.9 61.4 102 48-169 71-172 (775)
31 PRK12704 phosphodiesterase; Pr 96.4 0.15 3.3E-06 60.6 18.1 78 350-434 59-136 (520)
32 PRK11637 AmiB activator; Provi 96.3 2.2 4.7E-05 49.2 26.7 27 591-617 158-184 (428)
33 PRK11637 AmiB activator; Provi 96.3 1.8 3.8E-05 49.9 25.4 32 301-332 93-124 (428)
34 KOG0964 Structural maintenance 96.1 7.1 0.00015 50.1 34.8 300 205-521 172-489 (1200)
35 KOG0933 Structural maintenance 96.0 7.7 0.00017 49.9 32.7 274 250-548 679-979 (1174)
36 TIGR03319 YmdA_YtgF conserved 96.0 0.31 6.8E-06 57.9 18.1 75 350-431 53-127 (514)
37 PF08317 Spc7: Spc7 kinetochor 95.8 2 4.3E-05 48.2 22.4 167 396-568 126-292 (325)
38 PRK00106 hypothetical protein; 95.7 0.79 1.7E-05 55.1 20.1 75 350-431 74-148 (535)
39 PF00038 Filament: Intermediat 95.6 4.4 9.6E-05 44.2 34.9 187 489-690 58-249 (312)
40 PF01576 Myosin_tail_1: Myosin 95.6 0.0031 6.8E-08 78.0 0.0 221 45-272 202-429 (859)
41 KOG4674 Uncharacterized conser 95.3 18 0.00038 49.4 71.8 468 47-547 373-892 (1822)
42 KOG0018 Structural maintenance 95.1 15 0.00034 47.5 31.9 295 359-680 181-481 (1141)
43 PRK12704 phosphodiesterase; Pr 95.1 0.29 6.3E-06 58.3 13.9 65 358-425 56-120 (520)
44 PHA02562 46 endonuclease subun 95.0 9.6 0.00021 44.6 27.6 89 455-543 307-395 (562)
45 TIGR03319 YmdA_YtgF conserved 94.9 0.36 7.8E-06 57.4 13.8 71 358-431 50-120 (514)
46 PRK00106 hypothetical protein; 94.9 1.2 2.7E-05 53.5 18.0 36 860-900 452-487 (535)
47 KOG0977 Nuclear envelope prote 94.5 16 0.00034 44.7 29.5 311 130-499 68-384 (546)
48 PRK04863 mukB cell division pr 94.5 26 0.00057 47.2 43.1 145 127-276 232-397 (1486)
49 PF12072 DUF3552: Domain of un 94.4 0.96 2.1E-05 47.6 14.0 70 356-425 61-130 (201)
50 PF00038 Filament: Intermediat 94.0 11 0.00024 41.2 35.5 92 598-694 215-306 (312)
51 PHA02562 46 endonuclease subun 94.0 16 0.00034 42.9 33.9 99 434-539 307-405 (562)
52 KOG1029 Endocytic adaptor prot 93.8 26 0.00056 44.5 30.8 175 439-621 316-518 (1118)
53 PF05701 WEMBL: Weak chloropla 92.9 26 0.00057 42.1 47.9 147 423-587 282-428 (522)
54 KOG0996 Structural maintenance 92.6 46 0.001 43.9 42.0 152 472-639 385-539 (1293)
55 PF13851 GAS: Growth-arrest sp 92.0 19 0.00042 38.4 20.1 143 480-639 22-168 (201)
56 COG1340 Uncharacterized archae 90.3 39 0.00084 38.7 30.3 53 394-446 30-82 (294)
57 PF12072 DUF3552: Domain of un 90.0 8.9 0.00019 40.5 14.5 59 374-432 72-130 (201)
58 PRK12705 hypothetical protein; 89.9 18 0.00038 43.9 18.5 60 357-423 61-120 (508)
59 PF05667 DUF812: Protein of un 89.6 63 0.0014 40.0 24.8 216 254-489 320-544 (594)
60 TIGR03185 DNA_S_dndD DNA sulfu 88.4 72 0.0016 39.2 33.8 18 20-37 37-54 (650)
61 PF05557 MAD: Mitotic checkpoi 87.5 4 8.6E-05 50.2 11.5 23 619-641 618-640 (722)
62 KOG0612 Rho-associated, coiled 87.5 1.2E+02 0.0026 40.6 42.3 75 125-202 458-532 (1317)
63 PF05557 MAD: Mitotic checkpoi 87.3 6.9 0.00015 48.3 13.2 69 256-325 258-326 (722)
64 smart00787 Spc7 Spc7 kinetocho 85.8 72 0.0016 36.5 22.0 167 396-568 121-287 (312)
65 PF08317 Spc7: Spc7 kinetochor 85.1 72 0.0016 36.2 18.7 29 494-522 232-260 (325)
66 TIGR03185 DNA_S_dndD DNA sulfu 84.9 1.1E+02 0.0023 37.8 35.0 44 658-701 422-465 (650)
67 KOG0612 Rho-associated, coiled 84.7 1.6E+02 0.0034 39.6 48.2 38 957-995 1127-1164(1317)
68 KOG0250 DNA repair protein RAD 82.4 1.8E+02 0.0039 38.5 52.1 130 127-260 276-406 (1074)
69 PRK09039 hypothetical protein; 82.3 1E+02 0.0022 35.5 18.8 114 116-233 65-178 (343)
70 PF12718 Tropomyosin_1: Tropom 80.9 70 0.0015 32.7 16.6 90 182-282 11-100 (143)
71 KOG0964 Structural maintenance 80.6 2.1E+02 0.0044 37.9 50.5 109 605-718 694-818 (1200)
72 TIGR01005 eps_transp_fam exopo 80.2 1.4E+02 0.003 37.2 20.1 73 147-219 184-264 (754)
73 KOG0994 Extracellular matrix g 80.1 2.3E+02 0.005 38.2 31.8 204 222-431 1520-1740(1758)
74 PF13863 DUF4200: Domain of un 79.9 45 0.00098 32.1 12.8 89 364-462 12-100 (126)
75 TIGR02680 conserved hypothetic 79.7 2.4E+02 0.0052 38.2 29.7 118 62-194 711-830 (1353)
76 PRK04863 mukB cell division pr 79.4 2.6E+02 0.0057 38.4 48.7 30 333-362 505-534 (1486)
77 PF09755 DUF2046: Uncharacteri 79.4 1.3E+02 0.0028 34.9 24.5 113 553-672 85-200 (310)
78 PF09755 DUF2046: Uncharacteri 79.3 1.3E+02 0.0028 34.9 22.0 97 503-602 81-188 (310)
79 PF09726 Macoilin: Transmembra 79.1 1.9E+02 0.0042 36.7 26.6 54 357-418 543-597 (697)
80 KOG0976 Rho/Rac1-interacting s 78.8 2.1E+02 0.0046 37.1 37.6 128 363-500 263-401 (1265)
81 PF05262 Borrelia_P83: Borreli 77.9 1.1E+02 0.0024 37.4 17.6 70 405-474 189-258 (489)
82 PF05483 SCP-1: Synaptonemal c 77.0 2.2E+02 0.0048 36.3 66.0 461 211-713 231-728 (786)
83 TIGR01843 type_I_hlyD type I s 74.5 1.5E+02 0.0033 33.2 20.0 53 2-65 47-102 (423)
84 PF06818 Fez1: Fez1; InterPro 74.4 1.1E+02 0.0023 33.7 14.8 130 444-595 32-170 (202)
85 PF00769 ERM: Ezrin/radixin/mo 74.2 1.1E+02 0.0023 33.9 15.1 79 443-521 12-90 (246)
86 PF10473 CENP-F_leu_zip: Leuci 73.4 1.2E+02 0.0026 31.5 18.3 89 468-556 7-95 (140)
87 TIGR03007 pepcterm_ChnLen poly 73.1 2E+02 0.0043 33.9 18.9 34 152-185 156-189 (498)
88 PRK09039 hypothetical protein; 72.4 1.9E+02 0.0042 33.4 20.2 51 465-515 117-167 (343)
89 PF11559 ADIP: Afadin- and alp 72.0 43 0.00093 33.6 10.7 76 396-474 71-146 (151)
90 KOG4643 Uncharacterized coiled 70.3 3.7E+02 0.008 35.8 46.1 86 441-526 465-550 (1195)
91 KOG0977 Nuclear envelope prote 69.7 2.9E+02 0.0063 34.4 35.8 289 350-686 87-378 (546)
92 PF10146 zf-C4H2: Zinc finger- 69.7 93 0.002 34.4 13.4 75 628-703 4-78 (230)
93 PF04111 APG6: Autophagy prote 69.6 70 0.0015 36.4 12.9 9 844-852 279-287 (314)
94 PRK12705 hypothetical protein; 68.0 3E+02 0.0065 33.9 19.9 60 350-413 65-124 (508)
95 PF04111 APG6: Autophagy prote 67.4 77 0.0017 36.1 12.7 34 479-512 100-133 (314)
96 KOG0804 Cytoplasmic Zn-finger 67.1 1.5E+02 0.0032 36.1 15.1 109 492-623 347-455 (493)
97 PF05622 HOOK: HOOK protein; 67.0 1.8 4E-05 53.1 0.0 155 191-359 192-357 (713)
98 COG1579 Zn-ribbon protein, pos 64.0 2.5E+02 0.0054 31.6 20.3 68 339-410 15-82 (239)
99 PF00769 ERM: Ezrin/radixin/mo 62.4 1.9E+02 0.0041 32.0 14.1 121 162-282 3-123 (246)
100 TIGR01000 bacteriocin_acc bact 61.8 1.5E+02 0.0033 34.8 14.1 17 45-61 105-121 (457)
101 PF10146 zf-C4H2: Zinc finger- 59.9 2E+02 0.0044 31.8 13.7 95 473-567 3-103 (230)
102 PF12126 DUF3583: Protein of u 59.9 2.8E+02 0.006 32.4 14.9 121 448-579 4-124 (324)
103 COG4026 Uncharacterized protei 59.4 88 0.0019 35.1 10.8 83 480-566 118-205 (290)
104 PLN03188 kinesin-12 family pro 59.0 4.2E+02 0.0091 36.1 18.1 151 111-287 1079-1250(1320)
105 COG2433 Uncharacterized conser 58.4 1.4E+02 0.0031 37.4 13.3 72 465-540 423-494 (652)
106 COG4942 Membrane-bound metallo 56.8 4.3E+02 0.0094 32.0 29.3 76 443-521 171-246 (420)
107 PF09325 Vps5: Vps5 C terminal 55.6 2.7E+02 0.0058 29.2 16.3 65 170-237 162-235 (236)
108 PF09731 Mitofilin: Mitochondr 54.6 4.7E+02 0.01 31.7 25.8 14 708-721 429-442 (582)
109 PF10186 Atg14: UV radiation r 52.7 3.3E+02 0.0071 29.3 17.2 91 250-340 65-155 (302)
110 TIGR02977 phageshock_pspA phag 50.6 3.5E+02 0.0077 29.1 17.0 124 26-149 2-137 (219)
111 PF05262 Borrelia_P83: Borreli 50.0 5.2E+02 0.011 31.9 16.0 14 306-319 194-207 (489)
112 KOG2129 Uncharacterized conser 49.4 5.8E+02 0.013 31.3 16.1 173 346-518 141-329 (552)
113 KOG0946 ER-Golgi vesicle-tethe 48.2 7.8E+02 0.017 32.4 26.8 75 260-342 679-753 (970)
114 PF14662 CCDC155: Coiled-coil 47.8 4.2E+02 0.0091 29.2 23.1 171 429-619 18-188 (193)
115 PF09789 DUF2353: Uncharacteri 47.4 5.3E+02 0.011 30.2 23.1 203 436-656 2-227 (319)
116 PRK00409 recombination and DNA 46.8 4.3E+02 0.0094 33.9 15.4 105 256-360 489-593 (782)
117 TIGR01843 type_I_hlyD type I s 46.6 4.7E+02 0.01 29.4 19.2 48 201-248 132-179 (423)
118 PF09730 BicD: Microtubule-ass 46.4 7.7E+02 0.017 31.9 21.7 152 553-713 17-181 (717)
119 KOG0962 DNA repair protein RAD 46.0 9.8E+02 0.021 33.0 70.5 130 603-744 992-1129(1294)
120 TIGR01005 eps_transp_fam exopo 44.9 7.3E+02 0.016 31.1 18.5 17 128-144 211-227 (754)
121 PF03904 DUF334: Domain of unk 44.7 5.1E+02 0.011 29.3 14.7 111 492-608 43-154 (230)
122 COG1579 Zn-ribbon protein, pos 44.2 5.2E+02 0.011 29.2 23.1 90 505-598 95-184 (239)
123 PF08614 ATG16: Autophagy prot 44.2 2.3E+02 0.005 29.9 10.8 77 216-292 70-146 (194)
124 PF12329 TMF_DNA_bd: TATA elem 43.6 2.2E+02 0.0047 26.5 9.2 67 452-528 3-69 (74)
125 PF05701 WEMBL: Weak chloropla 43.2 7.1E+02 0.015 30.5 48.7 111 207-327 124-234 (522)
126 KOG0995 Centromere-associated 43.1 7.9E+02 0.017 31.0 39.9 98 437-548 260-360 (581)
127 PF10473 CENP-F_leu_zip: Leuci 43.0 4.1E+02 0.0089 27.7 16.7 100 232-331 1-100 (140)
128 COG1340 Uncharacterized archae 42.9 6E+02 0.013 29.6 28.0 23 616-638 133-155 (294)
129 PTZ00266 NIMA-related protein 42.4 2.6E+02 0.0057 37.1 12.8 15 70-84 91-105 (1021)
130 PF11932 DUF3450: Protein of u 41.9 5E+02 0.011 28.4 13.4 64 488-551 38-108 (251)
131 KOG1103 Predicted coiled-coil 41.7 7E+02 0.015 30.0 15.8 19 811-829 420-438 (561)
132 PF03962 Mnd1: Mnd1 family; I 41.4 4E+02 0.0087 28.5 12.1 38 446-483 65-102 (188)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.4 3.8E+02 0.0082 26.8 16.9 96 443-541 17-112 (132)
134 PF03962 Mnd1: Mnd1 family; I 41.2 4E+02 0.0086 28.6 12.0 26 490-515 74-99 (188)
135 TIGR03017 EpsF chain length de 41.0 6.3E+02 0.014 29.3 19.5 44 146-189 160-203 (444)
136 PF07106 TBPIP: Tat binding pr 40.3 2.9E+02 0.0062 28.4 10.5 32 443-474 72-103 (169)
137 KOG4403 Cell surface glycoprot 40.3 8E+02 0.017 30.3 18.0 18 567-584 246-263 (575)
138 PF04871 Uso1_p115_C: Uso1 / p 39.5 4.4E+02 0.0095 27.0 14.3 37 472-508 78-114 (136)
139 KOG0804 Cytoplasmic Zn-finger 39.2 7.5E+02 0.016 30.5 14.8 75 389-466 373-447 (493)
140 PF02841 GBP_C: Guanylate-bind 38.8 6.1E+02 0.013 28.5 15.5 9 126-134 41-49 (297)
141 KOG4661 Hsp27-ERE-TATA-binding 38.7 4E+02 0.0087 33.6 12.7 20 585-604 681-700 (940)
142 PF15066 CAGE1: Cancer-associa 38.6 8.7E+02 0.019 30.2 21.6 85 476-564 406-490 (527)
143 PF04012 PspA_IM30: PspA/IM30 37.2 5.3E+02 0.012 27.4 15.9 63 27-89 2-68 (221)
144 PF10186 Atg14: UV radiation r 37.2 5.6E+02 0.012 27.6 16.7 12 490-501 138-149 (302)
145 TIGR01069 mutS2 MutS2 family p 36.5 6.3E+02 0.014 32.5 14.6 33 140-172 136-168 (771)
146 PF09787 Golgin_A5: Golgin sub 36.2 8.7E+02 0.019 29.6 28.6 19 668-686 410-428 (511)
147 TIGR00634 recN DNA repair prot 36.1 8.9E+02 0.019 29.6 22.1 218 462-715 159-380 (563)
148 PF14662 CCDC155: Coiled-coil 36.0 6.3E+02 0.014 27.9 19.3 152 125-280 8-176 (193)
149 PRK10698 phage shock protein P 35.9 6.2E+02 0.013 27.7 15.0 63 26-88 2-68 (222)
150 PF06476 DUF1090: Protein of u 35.8 1.3E+02 0.0027 30.2 6.9 66 127-194 45-112 (115)
151 PF09744 Jnk-SapK_ap_N: JNK_SA 35.3 5.7E+02 0.012 27.1 12.6 71 382-458 80-157 (158)
152 TIGR01069 mutS2 MutS2 family p 35.1 8.3E+02 0.018 31.5 15.3 99 256-354 484-582 (771)
153 PRK00409 recombination and DNA 34.6 5.6E+02 0.012 33.0 13.8 35 141-175 142-176 (782)
154 PF05266 DUF724: Protein of un 34.4 2.5E+02 0.0054 30.3 9.3 62 661-722 107-168 (190)
155 PF14988 DUF4515: Domain of un 34.4 6.5E+02 0.014 27.5 15.3 114 581-694 7-130 (206)
156 KOG1962 B-cell receptor-associ 33.3 3.1E+02 0.0066 30.6 9.9 56 504-570 156-211 (216)
157 PRK15422 septal ring assembly 32.7 2.7E+02 0.006 26.8 8.1 55 465-519 12-66 (79)
158 cd07647 F-BAR_PSTPIP The F-BAR 32.4 6.9E+02 0.015 27.2 18.2 48 560-608 168-215 (239)
159 KOG1853 LIS1-interacting prote 32.4 8.5E+02 0.018 28.3 15.6 81 190-277 50-130 (333)
160 COG4372 Uncharacterized protei 30.8 1.1E+03 0.023 28.9 23.0 148 165-326 124-274 (499)
161 COG1842 PspA Phage shock prote 30.7 7.9E+02 0.017 27.3 12.7 106 130-248 29-134 (225)
162 smart00502 BBC B-Box C-termina 30.6 4.4E+02 0.0096 24.4 11.4 50 580-629 38-87 (127)
163 PRK11519 tyrosine kinase; Prov 29.9 1.2E+03 0.026 29.5 15.5 44 146-189 256-299 (719)
164 KOG3859 Septins (P-loop GTPase 29.5 4.9E+02 0.011 30.7 11.0 52 396-450 350-401 (406)
165 PRK11281 hypothetical protein; 29.5 1.6E+03 0.035 30.5 27.3 54 218-271 126-179 (1113)
166 KOG0980 Actin-binding protein 29.0 1.5E+03 0.033 30.2 27.5 236 116-359 349-603 (980)
167 KOG3200 Uncharacterized conser 28.8 76 0.0017 34.5 4.4 55 801-855 69-159 (224)
168 PF06428 Sec2p: GDP/GTP exchan 28.8 1.3E+02 0.0029 29.5 5.7 68 119-189 2-69 (100)
169 smart00806 AIP3 Actin interact 28.8 1.2E+03 0.025 28.7 15.8 138 132-278 155-319 (426)
170 cd07672 F-BAR_PSTPIP2 The F-BA 28.2 8.6E+02 0.019 27.0 20.1 112 490-608 105-216 (240)
171 PRK15422 septal ring assembly 28.0 5.7E+02 0.012 24.8 9.4 57 483-543 6-62 (79)
172 KOG0976 Rho/Rac1-interacting s 27.9 1.6E+03 0.034 30.0 44.9 106 312-419 100-208 (1265)
173 PRK10884 SH3 domain-containing 27.4 6.3E+02 0.014 27.7 11.0 22 490-511 144-165 (206)
174 KOG0979 Structural maintenance 27.4 1.7E+03 0.037 30.2 23.9 223 271-505 164-401 (1072)
175 TIGR02977 phageshock_pspA phag 27.1 8.2E+02 0.018 26.4 12.5 40 208-247 94-133 (219)
176 PF10234 Cluap1: Clusterin-ass 27.1 5.1E+02 0.011 29.6 10.5 94 415-511 158-258 (267)
177 KOG0994 Extracellular matrix g 27.0 1.9E+03 0.041 30.6 34.8 155 239-420 1596-1750(1758)
178 KOG0995 Centromere-associated 26.8 1.4E+03 0.03 29.0 42.5 37 488-524 342-378 (581)
179 TIGR01010 BexC_CtrB_KpsE polys 25.9 8.2E+02 0.018 27.9 12.1 30 258-287 274-303 (362)
180 PF05911 DUF869: Plant protein 24.5 1.7E+03 0.037 29.2 20.8 165 69-245 527-712 (769)
181 KOG4657 Uncharacterized conser 24.4 1.1E+03 0.024 26.9 12.1 71 258-328 47-117 (246)
182 PF10212 TTKRSYEDQ: Predicted 24.2 7.8E+02 0.017 30.7 12.0 112 193-310 403-514 (518)
183 PF04156 IncA: IncA protein; 24.1 8.1E+02 0.018 25.3 15.1 29 477-505 94-122 (191)
184 PF05622 HOOK: HOOK protein; 23.4 27 0.00058 43.3 0.0 51 129-187 271-321 (713)
185 PRK09841 cryptic autophosphory 23.4 1.6E+03 0.035 28.5 17.1 30 288-317 354-383 (726)
186 KOG1003 Actin filament-coating 23.4 1.1E+03 0.023 26.4 22.4 119 308-460 85-203 (205)
187 KOG0972 Huntingtin interacting 22.4 1.3E+03 0.029 27.3 13.4 155 332-492 204-372 (384)
188 PRK10884 SH3 domain-containing 22.4 6.2E+02 0.013 27.7 9.8 52 241-292 118-169 (206)
189 PF10498 IFT57: Intra-flagella 21.8 1.2E+03 0.026 27.6 12.6 135 333-470 198-337 (359)
190 KOG0249 LAR-interacting protei 21.8 1.9E+03 0.042 28.9 16.6 61 364-424 96-158 (916)
191 KOG2891 Surface glycoprotein [ 21.2 1.4E+03 0.03 26.9 13.8 114 230-352 326-441 (445)
192 KOG0999 Microtubule-associated 21.1 1.8E+03 0.039 28.3 28.7 191 502-710 39-251 (772)
193 PF10498 IFT57: Intra-flagella 21.1 9.3E+02 0.02 28.5 11.5 99 152-281 222-320 (359)
194 PF06818 Fez1: Fez1; InterPro 21.0 1.2E+03 0.025 26.0 15.7 30 489-521 135-164 (202)
195 PF15254 CCDC14: Coiled-coil d 21.0 1.8E+03 0.04 29.1 14.5 98 512-616 440-537 (861)
196 PF05529 Bap31: B-cell recepto 20.8 5.4E+02 0.012 26.9 8.8 35 488-522 157-191 (192)
197 PF06103 DUF948: Bacterial pro 20.8 3.3E+02 0.0071 25.3 6.5 53 124-176 25-77 (90)
198 TIGR03545 conserved hypothetic 20.7 6.2E+02 0.013 31.5 10.4 90 381-472 165-262 (555)
199 PF09730 BicD: Microtubule-ass 20.6 2E+03 0.042 28.5 17.2 61 506-574 121-181 (717)
200 PF14992 TMCO5: TMCO5 family 20.0 9.7E+02 0.021 27.8 11.0 64 353-417 37-100 (280)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.46 E-value=6e-07 Score=108.08 Aligned_cols=148 Identities=16% Similarity=0.215 Sum_probs=61.8
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001296 125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201 (1106)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE 201 (1106)
+.+..++..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444444321 12233333333334444433333333333333333444444444555555555555
Q ss_pred hHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001296 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1106)
Q Consensus 202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 279 (1106)
+.++.....+..+.+.+...+ ...++.+.+.++.+.....-+..-+..+......+..++.++++.+..++
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~~-------~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 331 EECRVAAQAHNEEAESLREDA-------DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444433333333333 33333333333333333333444444444444445555555555444444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.30 E-value=3.3e-05 Score=100.44 Aligned_cols=272 Identities=21% Similarity=0.266 Sum_probs=177.0
Q ss_pred hHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHhhhhhhHHHHHHHHH----HhhhhHHHHh
Q 001296 342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS 414 (1106)
Q Consensus 342 h~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ks 414 (1106)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777776644433333 35666666665555555555554444443 2334556666
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 001296 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494 (1106)
Q Consensus 415 k~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEI 494 (1106)
..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+
T Consensus 1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666677777777777777777777777777776666 4566667777777777788888888899999
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001296 495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1106)
Q Consensus 495 d~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1106)
..+=.|.++....+..+-..+..|+.+-+.+ +.++. ..+..+-++..-+. ++..+.+.++.+|.-+.+.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle----~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLE----EETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888888888888887766 33333 33444444443333 4566677777777777776
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001296 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 628 (1106)
Q Consensus 575 L~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~ 628 (1106)
...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-
T Consensus 1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~ 1397 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEA 1397 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5421111 1222234456666777666666777777777777776666665554
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=0.00015 Score=87.77 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001296 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (1106)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s 188 (1106)
...|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+++......+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999833 35567778888888888888888888888777766 2234556667777777766666666
Q ss_pred HHhhhhHHHhhhhhHHH
Q 001296 189 SAERKLQEVVAREDDLS 205 (1106)
Q Consensus 189 ~aeRKL~eVEaRE~~Lr 205 (1106)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555544444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=0.00032 Score=89.41 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 001296 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1106)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1106)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555555555555555555555 22244555555555555555555
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=0.00045 Score=88.12 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=53.0
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001296 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1106)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1106)
...|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 3446677777777777777777777777777777777777777777777776666666666666666665554444
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.81 E-value=0.0013 Score=80.13 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=4.6
Q ss_pred hhhHHHHHHHHH
Q 001296 78 ASKYEQIKASAE 89 (1106)
Q Consensus 78 tSK~EeLkqa~~ 89 (1106)
...++.+.+.+.
T Consensus 231 ~~~l~~~~~~~~ 242 (1179)
T TIGR02168 231 VLRLEELREELE 242 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 333444333333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.67 E-value=0.0047 Score=78.38 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001296 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (1106)
Q Consensus 54 skLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadL 130 (1106)
-.|..++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.++..+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666653 45556666777777777777666533 334444445555666666666666666666666666
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 001296 131 EKAVHEIRAESAETKVAA 148 (1106)
Q Consensus 131 EKAL~emr~E~AeiK~ts 148 (1106)
...+.++-.+.+.++-..
T Consensus 294 ~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 294 KEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655433
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.0035 Score=75.97 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhh
Q 001296 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1106)
Q Consensus 212 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqR 253 (1106)
..+....+..+..-...+.+|+..+.+.+..+...+.++.+.
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~ 285 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554445556666666666666666655555443
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.57 E-value=0.0063 Score=74.42 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=5.9
Q ss_pred HHHHHHHHccCC
Q 001296 26 SIWKRLKEAGLD 37 (1106)
Q Consensus 26 ~iWkr~~eaG~D 37 (1106)
++=..|..+|++
T Consensus 123 ~~~~~l~~~~i~ 134 (1179)
T TIGR02168 123 DIQDLFLDTGLG 134 (1179)
T ss_pred HHHHHHhccCCC
Confidence 334455555553
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=98.43 E-value=0.013 Score=71.22 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.1
Q ss_pred CCCCcHHHHHHHHHc
Q 001296 20 SPLSDESIWKRLKEA 34 (1106)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (1106)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 556667776665543
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.40 E-value=0.017 Score=71.06 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=25.5
Q ss_pred HHHhhHhhhhhhhhHH--HHHHhHHHHHHHHHhhhhhhh
Q 001296 109 ARKREESLKKTLGVEK--ECIASLEKAVHEIRAESAETK 145 (1106)
Q Consensus 109 aeKREEnLkKALgvEK--qCVadLEKAL~emr~E~AeiK 145 (1106)
...|.+-+...+|++. .|...+-.++..++++...+.
T Consensus 148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le 186 (895)
T PRK01156 148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNID 186 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668999999985 566666666666666655543
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.38 E-value=0.018 Score=70.98 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 001296 686 EWAELNNSIEELMVQRQLLHADREEIQAESERLK 719 (1106)
Q Consensus 686 e~~EL~~lse~LK~QRE~~~~ERe~fl~~vEklK 719 (1106)
++.++..--..|..|++-+...+..|...|+.|+
T Consensus 980 ~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555555555555544
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.26 E-value=0.033 Score=68.80 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.3
Q ss_pred HHHHHHHHHccCChHH
Q 001296 25 ESIWKRLKEAGLDEVS 40 (1106)
Q Consensus 25 ~~iWkr~~eaG~De~S 40 (1106)
.++=..|...||+..+
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888986543
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.20 E-value=0.079 Score=70.56 Aligned_cols=282 Identities=22% Similarity=0.223 Sum_probs=147.4
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001296 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (1106)
Q Consensus 36 ~De~S~~rrD~~--aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKRE 113 (1106)
-+++-|..+|.. .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.+++++.+.+..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356666666543 34556666677777888888888888888888887777788888888888776544321111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001296 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1106)
Q Consensus 114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1106)
..+..-+..+..=.++|++-.+++..++.+.+ .+.+.++-....=+.+ ..+..+||-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11112222222222334444444444333332 2222222222222222 22333343333
Q ss_pred hHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 001296 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (1106)
Q Consensus 177 eak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~ 256 (1106)
...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333322 22233444444445555555555556666666666666666666655555555555555555444445
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001296 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1106)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1106)
..+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666665554444444333333333444445555555556666666555555443
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.15 E-value=0.072 Score=68.35 Aligned_cols=206 Identities=14% Similarity=0.274 Sum_probs=146.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001296 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558 (1106)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK 558 (1106)
++.+|......|.++++.+..+...+.+....+..+.....+.-+.+...-+..+-+++........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688899999999999999999999999888988888888888888888777777777777666666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001296 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 638 (1106)
Q Consensus 559 ~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE 638 (1106)
..+..-+..+...+..+..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665553 445566666666666666566566666666666666666666665555554
Q ss_pred HH-------HHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHH
Q 001296 639 EE-------KMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 688 (1106)
Q Consensus 639 ee-------k~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~ 688 (1106)
++ ...+|.. |+- .-..++++++++..++.+++.-|..|..=+.=+...|.
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~ 809 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD 809 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 43 3344432 221 44556778888888888888888888766665555554
No 16
>PRK01156 chromosome segregation protein; Provisional
Probab=98.15 E-value=0.053 Score=66.77 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=10.4
Q ss_pred CCCCcHHHHHHHHHccC
Q 001296 20 SPLSDESIWKRLKEAGL 36 (1106)
Q Consensus 20 ~~~~d~~iWkr~~eaG~ 36 (1106)
+++|=..+...+.=|-|
T Consensus 32 NGsGKSsileAI~~aL~ 48 (895)
T PRK01156 32 NGAGKSSIVDAIRFALF 48 (895)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 56677777666663334
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.019 Score=70.03 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=126.6
Q ss_pred hhhhhHHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHhhhhhhHHHHHHHHHHhhhhHH-HHhhhh
Q 001296 347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 417 (1106)
Q Consensus 347 ~~Kk~EFE---lElE~kRKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 417 (1106)
|.|+-.|+ +|||..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665 688888888888777777777666543 22333 3334455667777777666654332 233333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001296 418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 485 (1106)
Q Consensus 418 KEkEksLkaeEK~--le~e-------k~~L~~dKEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lr 485 (1106)
..+|-.-+-.||. ++-+ .+|...+.+.|-.+| ..++--+..|..++.++..-.....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 122223333333333 2334444445555555554444333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001296 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 552 (1106)
Q Consensus 486 LQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~-------------~~ 552 (1106)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999998754 34444445555555443322 45
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001296 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1106)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 587 (1106)
+.+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777888888888888888888888887766665
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.86 E-value=0.17 Score=62.70 Aligned_cols=324 Identities=19% Similarity=0.267 Sum_probs=194.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhHH-------HHHHHH
Q 001296 295 TLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAI 359 (1106)
Q Consensus 295 rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~EF-------ElElE~ 359 (1106)
....+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+..
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~ 256 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYR 256 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777788888899888666443322 222 3468887764 3444444 555554
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH
Q 001296 360 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ 439 (1106)
Q Consensus 360 kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~ 439 (1106)
.+..++---. -+.-..++++.........|.. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-
T Consensus 257 L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 257 LRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred HHhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443321111 1222223333333333333321 33334445566666666666666666666666777777788888
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001296 440 KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1106)
Q Consensus 440 ~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE 519 (1106)
+--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999887665544455666666666666666666655553332111
Q ss_pred HHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001296 520 AEWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1106)
Q Consensus 520 ~EWE~LDEKRael~------------KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 587 (1106)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+
T Consensus 413 ---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL- 488 (775)
T PF10174_consen 413 ---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL- 488 (775)
T ss_pred ---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 11222233333 33333334444444444444444444444444677777777777777777665
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhHH
Q 001296 588 HEHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESSF 630 (1106)
Q Consensus 588 hE~s~~~eKiq~Erad~l~d~Emqkre---LE~~iqkRqEEiE~~L 630 (1106)
||+..-+.-++.+-+.+.-+.+-+..+ |++.+++.++++++-.
T Consensus 489 sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~ 534 (775)
T PF10174_consen 489 SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLE 534 (775)
T ss_pred HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 577777777777777776666555544 4566777776665433
No 19
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.19 Score=62.58 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhh
Q 001296 178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251 (1106)
Q Consensus 178 ak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LN 251 (1106)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444333333 23333333333344444444444444444444444444
Q ss_pred hhhHhhHhhHHH
Q 001296 252 EREDHILSKLQE 263 (1106)
Q Consensus 252 qREe~~~e~~~~ 263 (1106)
+...-+.++...
T Consensus 354 ~~~~~~~~~~~~ 365 (908)
T COG0419 354 ELAKLLEERLKE 365 (908)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.27 Score=62.99 Aligned_cols=190 Identities=22% Similarity=0.286 Sum_probs=105.0
Q ss_pred HHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhccchhheehhhhhhh
Q 001296 25 ESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELASK 80 (1106)
Q Consensus 25 ~~iWkr~~eaG~De--------------~S~~rrD~~aLia~I----------skLE~ElydYQynMGLLLiEkKEwtSK 80 (1106)
.||=.-|...|++. .+++..++..|++-+ .+.+..|-.=+=|+--+=.-..+...+
T Consensus 122 ~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~ 201 (1163)
T COG1196 122 KDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQ 201 (1163)
T ss_pred HHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888743 345777777777644 355667777788888888888889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh----HH---HHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhh
Q 001296 81 YEQIKASAEAAELLQKHDRASHLS----AI---AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFA 153 (1106)
Q Consensus 81 ~EeLkqa~~eae~~lKREqaAhl~----AL---sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLa 153 (1106)
++.|+.....|+..+.-...-... .+ ....+.-+.+..+++-=..=+.++...+.+.-.++. ....++.
T Consensus 202 l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 277 (1163)
T COG1196 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIE----ELKSELE 277 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 999988888887765543322222 22 222222333333333222222233333333222222 2334555
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHH
Q 001296 154 EARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (1106)
Q Consensus 154 EA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1106)
+...-+...+.....+-.++...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus 278 e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555444444
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.74 E-value=0.21 Score=59.93 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHhhH
Q 001296 685 REWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAV 728 (1106)
Q Consensus 685 ~e~~EL~~lse~LK~QRE~~~~ERe~fl~~vEklK~ckncg~~~ 728 (1106)
+++.||++..+-+..-.|+|..++-.++..|++|.. .+|.+.
T Consensus 417 rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~--r~~~~~ 458 (546)
T PF07888_consen 417 RELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ--RLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 566678888888888888999999999999988863 344444
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.68 E-value=0.51 Score=62.81 Aligned_cols=454 Identities=18% Similarity=0.215 Sum_probs=238.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh-------hh---hhccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001296 40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (1106)
Q Consensus 40 S~~rrD~~aLia~IskLE~Ely-------dY---QynMGLLLiEk-------------KEwt---SK~EeLkqa~~eae~ 93 (1106)
+-.+.+.+-|-.+++.|++.|- .| +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888752 11 34666555443 2333 445566778888888
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001296 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (1106)
Q Consensus 94 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL 173 (1106)
+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888888888888877765544344456677777777777777778888888888887777766554444332
Q ss_pred hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHH---HHhchHHHHHHHHHHHHHHHHHHhhh
Q 001296 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIR---ERQSLSDRKKILQQEHERLLDAQTLL 250 (1106)
Q Consensus 174 ~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~---qRe~L~eweKkLqe~eeRL~e~q~~L 250 (1106)
-.+++..+.+-.. |..++........-|+.++.. -.+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 333333344444444444322 12333444444444444444444444
Q ss_pred hhhhHhhHhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HHhhhHHHHHHHHHH--HHHhHHh
Q 001296 251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 319 (1106)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~~~~~~~--Le~KEkE 319 (1106)
-++..-.-+..+-...+++-|+ ...+.|. ..+..|...=+.+....+ .++.-..-...+... .--+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4443333333222222222222 2222221 122222222222222211 111111111111111 1124444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001296 320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 383 (1106)
Q Consensus 320 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~---------eeEle~K~~~~E-~rEv------el~ 383 (1106)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..+. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444454433222 22334444444555555555555 344555555554 2222 223
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001296 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 451 (1106)
Q Consensus 384 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~-------~L-----~~dKEel~~lK~d 451 (1106)
+-..++ +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+.. .| ..|+.++.+++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444333333333333343333333333333333222 12 2357788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001296 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1106)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEK 528 (1106)
|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888666666555443 4455578888888888888999999999999999999999876666
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.48 E-value=2.5e-05 Score=95.81 Aligned_cols=505 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001296 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 178 (1106)
Q Consensus 106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea 178 (1106)
|-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666666666777777777777766444444333333333322222221 222234456
Q ss_pred HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001296 179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (1106)
Q Consensus 179 k~AEa~Rk~s~aeRKL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqRE 254 (1106)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..|......++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6677777775543222 222222233444444444444444444433333344445666666666666666666666
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001296 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1106)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E 334 (1106)
..+++.......++.++.++...++.. ...+..|+- ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 666665555555555555555544333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHH
Q 001296 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411 (1106)
Q Consensus 335 IQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~ 411 (1106)
+ -.+..|..+.+..+.+++..+..++++-++|... +..-..+|..|-.++ +.....+.+.|.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHH
Confidence 0 1345677788888888888888888888777542 233344444443333 3344445556666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001296 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488 (1106)
Q Consensus 412 ~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~lrLQs 488 (1106)
.++..+.+.-..+.+.--.|+.-+..|+.+-+.+.. +|++..+ .++...++++.....++.- -.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777888888888877766654 5555444 5566666666544443322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~ 568 (1106)
.+..+.|..-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 566677777777777888888888888777778888877777788887777655443333322 2222221111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001296 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 648 (1106)
Q Consensus 569 krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~I 648 (1106)
+..++-+ .+-+...|..+.-|+..|+.-+-++++.|.+|+..|+..+..=...|
T Consensus 474 ~~~leE~--------------------------E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEA--------------------------EDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 1111111 12223455667778888999999999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001296 649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694 (1106)
Q Consensus 649 N~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~ls 694 (1106)
-+| ..++-.=-+.|.++.-.|++|+.++.+|..-.
T Consensus 528 ~~l-----------e~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~l 562 (859)
T PF01576_consen 528 ESL-----------EAELEEERKERAEALREKKKLESDLNELEIQL 562 (859)
T ss_dssp ----------------------------------------------
T ss_pred HHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33332222345556666677776666654333
No 24
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.64 Score=58.16 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=28.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001296 475 AMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539 (1106)
Q Consensus 475 iteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I 539 (1106)
...++...+..+..+|+...+.++.-. ....+.++++..-..+..-|..|.+.-..++......
T Consensus 556 ~l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 556 QLKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333344444444444444444333 2223444444444444445555555555554444444
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.17 E-value=0.98 Score=54.41 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001296 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1106)
Q Consensus 488 seLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1106)
+.+-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68999988777777777665443 57888888888887766666
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001296 568 HKRDVDSLNREREEFMNKMV 587 (1106)
Q Consensus 568 ~krelEsL~~ekEsF~~kMe 587 (1106)
.+.+-|.|..++-..|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555554
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.91 E-value=2.1 Score=54.77 Aligned_cols=107 Identities=25% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001296 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (1106)
Q Consensus 442 KEel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~ 520 (1106)
++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33344444444444444444444444444444 44555555544444556666666666666666666666666555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001296 521 EWEMIDEKREELRKEAERVAVERVVVSK 548 (1106)
Q Consensus 521 EWE~LDEKRael~KEa~~I~eEre~lek 548 (1106)
|-+.+..+...|.+-...+..+=..+.+
T Consensus 437 e~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555666655555544443333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.75 E-value=1.1 Score=48.09 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=82.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHH
Q 001296 227 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 306 (1106)
Q Consensus 227 e~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~ 306 (1106)
+.|..-..+|.+.+.++-+..+.+..=+.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-+
T Consensus 57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555444444443334444334444444444
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001296 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1106)
Q Consensus 307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~E 386 (1106)
+..++.+..-|.+|..+-..|-+=|-.+.+ ...+ +-.++.+-+.|..-|..=..-++--|..+...|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~---------~~~r----e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEK---------ASER----EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhh---------hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444322211110 0011 111222223333333333333444445555556
Q ss_pred HHHhhhhhhHHHHHHHHHHhhhhHHHHhhhh
Q 001296 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1106)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1106)
..+..-+-.|..--.+.+....+|+.-+..|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666665555443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.73 E-value=0.71 Score=49.44 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001296 233 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (1106)
Q Consensus 233 eKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~ 293 (1106)
.-++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 3344444555555555555555555555555666666666555555554444444444433
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.47 E-value=5 Score=52.26 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EW----E~LD-EKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 563 (1106)
.+++....+..+...+..+...+++++..|..+- -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666555432 2222 4444445555566666666777777777777777777
Q ss_pred HHHHHHhhhhh
Q 001296 564 MRDQHKRDVDS 574 (1106)
Q Consensus 564 ~r~~~krelEs 574 (1106)
++.+|..+|.+
T Consensus 755 le~~~~~eL~~ 765 (1201)
T PF12128_consen 755 LEQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHHh
Confidence 77777776544
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.40 E-value=4.4 Score=50.91 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001296 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (1106)
Q Consensus 48 aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCV 127 (1106)
.+..-|..|..|| --|..|+-|.-+...-.+-|+.+.. ++-++.-+-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4455566666677 6666666665555555555555555 444433222211111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH
Q 001296 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA 169 (1106)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv 169 (1106)
..|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..+
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~ 172 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSA 172 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 224467777888888888888887777777777766554443
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=96.35 E-value=0.15 Score=60.56 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001296 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1106)
Q Consensus 350 k~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1106)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555443 444556666677777777777777777777777776666666666665555
Q ss_pred HhHHH
Q 001296 430 EADLK 434 (1106)
Q Consensus 430 ~le~e 434 (1106)
+++.-
T Consensus 132 ~~~~~ 136 (520)
T PRK12704 132 ELEEL 136 (520)
T ss_pred HHHHH
Confidence 55433
No 32
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=2.2 Score=49.17 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhHH
Q 001296 591 SEWFTKIQQERADFLLGIEMQKRDLEN 617 (1106)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE~ 617 (1106)
..++..+.+-+.+++..|.-.+..|+.
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~~ 184 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELAA 184 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777766653
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.26 E-value=1.8 Score=49.93 Aligned_cols=32 Identities=6% Similarity=0.158 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh
Q 001296 301 KREEAVIEREASLQKKEQKLLVSQETLASKES 332 (1106)
Q Consensus 301 ~rEee~~~~~~~Le~KEkELl~leEKL~aRE~ 332 (1106)
..+.++......+...+.++..++.+|..+..
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555444443
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=7.1 Score=50.06 Aligned_cols=300 Identities=23% Similarity=0.296 Sum_probs=176.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001296 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 281 (1106)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~ 281 (1106)
|++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677788888888888888888888888888888888765555 23345555666666655543 33
Q ss_pred HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHH
Q 001296 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 358 (1106)
Q Consensus 282 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE 358 (1106)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 344444433333 33444555556666555555555555433 445555544443 3344444444433333
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHhhhhhhHHHHHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001296 359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 426 (1106)
Q Consensus 359 ~k---RKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksLka 426 (1106)
-- |++.-..++.=....+.++.++...+ ..+...|.-+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11111111111112222222222222 123333444444445555555555443 3445667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001296 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 506 (1106)
Q Consensus 427 eEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~Llk 506 (1106)
+=..| +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888777777777777777777788888888888888877666666666
Q ss_pred hhHHHHHHHHHHHHH
Q 001296 507 ETDKLQLEKAKFEAE 521 (1106)
Q Consensus 507 Ead~Lk~eKekFE~E 521 (1106)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666776666655543
No 35
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=7.7 Score=49.87 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001296 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1106)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1106)
||+++..+......|...+++|...+..-..- ..+++.|+-+=.+|.-++..+..
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf-------------------------~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEAQSQKF-------------------------RDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHH--HHHHHHHHHh-hhhhhhhhHHHHhhhhhhHHHHHHHHHHh
Q 001296 330 KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE--IEKKRRAWEL-RDLDLGQREESLLEREHDLEVQSRALVDK 406 (1106)
Q Consensus 330 RE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeE--le~K~~~~E~-rEvel~h~Eekl~kREqaLe~k~~~lkEK 406 (1106)
-+.--++.=+..+.-.+..=.++......-.+++.+.= |+++..+|.. ||..++..+..+-.-.|.++..+..++..
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001296 407 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 486 (1106)
Q Consensus 407 Ekdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrL 486 (1106)
+.++..=.-...+-++.+...+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++.-.-.+-+.++..
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~ 893 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS 893 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------------------HHHHHHHHH
Q 001296 487 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------------------KEAERVAVE 542 (1106)
Q Consensus 487 QseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~------------------------KEa~~I~eE 542 (1106)
+-..-.|+-..-.....|..|...++.++..-.++-+.|-.|-+=|. .+++.+.+-
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k 973 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEK 973 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHH
Q ss_pred HHHHHH
Q 001296 543 RVVVSK 548 (1106)
Q Consensus 543 re~lek 548 (1106)
.+++++
T Consensus 974 ~~~l~k 979 (1174)
T KOG0933|consen 974 KEKLEK 979 (1174)
T ss_pred HHHHHh
No 36
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.96 E-value=0.31 Score=57.91 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001296 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1106)
Q Consensus 350 k~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1106)
+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555444 444555566666666666666666666666666666666666666555555
Q ss_pred Hh
Q 001296 430 EA 431 (1106)
Q Consensus 430 ~l 431 (1106)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.79 E-value=2 Score=48.23 Aligned_cols=167 Identities=20% Similarity=0.176 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001296 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1106)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki 475 (1106)
+=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 33444555556666666666666665555555555555555555555555555555555555555555444443333 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001296 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1106)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1106)
..-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.
T Consensus 204 ~~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22334444 34667777777778888888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 001296 556 SLRQERDAMRDQH 568 (1106)
Q Consensus 556 rLK~EK~~~r~~~ 568 (1106)
+||..-+.++...
T Consensus 280 ~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 280 RLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 38
>PRK00106 hypothetical protein; Provisional
Probab=95.72 E-value=0.79 Score=55.07 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001296 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1106)
Q Consensus 350 k~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1106)
+.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444433 444455555555555555555555555555555555555555554444
Q ss_pred Hh
Q 001296 430 EA 431 (1106)
Q Consensus 430 ~l 431 (1106)
++
T Consensus 147 ~~ 148 (535)
T PRK00106 147 QV 148 (535)
T ss_pred HH
Confidence 44
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.62 E-value=4.4 Score=44.24 Aligned_cols=187 Identities=20% Similarity=0.346 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 565 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek---~~~~E~erLK~EK~~~r 565 (1106)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..+..+...+...-..... .+.+.-..|+.|..-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776666555433332222 24456778888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhh-hhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001296 566 DQHKRDVDSLNRERE-EFMNKMVH-EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 643 (1106)
Q Consensus 566 ~~~krelEsL~~ekE-sF~~kMeh-E~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~ 643 (1106)
..|..++..|...-. .+-..|.. -...+..-+..=| ...+..+.+-+.++|..++-+-.........
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 22111211 0122233333333 3444455555555555555554444433333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHH
Q 001296 644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAEL 690 (1106)
Q Consensus 644 EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL 690 (1106)
--..+.++ ..|+-.++..+..|..+-.-+......|+.++.+|
T Consensus 207 ~~~~~~~~----~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 207 SSEELESA----KEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchh----HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 22222222 33444444444444444444444455555554443
No 40
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.62 E-value=0.0031 Score=77.98 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhh-------ccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 001296 45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK 117 (1106)
Q Consensus 45 D~~aLia~IskLE~ElydYQy-------nMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLk 117 (1106)
.+..|.+...+|++|+-++.. ..+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|+
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~ 277 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR 277 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666677777665544 44445445556666666666555442 1222222334555555566888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHH
Q 001296 118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV 197 (1106)
Q Consensus 118 KALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eV 197 (1106)
..|.-|-.+...|++.|.-+..+.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999888888887666543322 2222222112233455555555555555555555554444
Q ss_pred hhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001296 198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1106)
Q Consensus 198 EaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1106)
.+=-.+++-+.-...+.+...++-..+--..|.+|..++......+-..++-....+-.++..-..+..+.-.++
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 444344444433344444444443333336677888877777666666665555555555555555544444444
No 41
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.34 E-value=18 Score=49.38 Aligned_cols=468 Identities=18% Similarity=0.204 Sum_probs=267.0
Q ss_pred HHHHHHH-------HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhh--h-hHHHH-HHHhhHh
Q 001296 47 AALIAYI-------AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASH--L-SAIAE-ARKREES 115 (1106)
Q Consensus 47 ~aLia~I-------skLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAh--l-~ALsE-aeKREEn 115 (1106)
+||.+.| +++.+..+.||--|-.+.+|.+.++-.|..+...+....-+||+...-. + .++++ .++++..
T Consensus 373 ~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~ 452 (1822)
T KOG4674|consen 373 AALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFS 452 (1822)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 6777888899999999999999999999888888888888888766532 2 22222 3566667
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhh--hhhh-hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhh
Q 001296 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAA--DSKF-AEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 192 (1106)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~ts--esKL-aEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeR 192 (1106)
+.+-.++|+ +|+.+..-...-+-+.|... -+.| -+++-|...+. .+...+++..-..
T Consensus 453 ~q~~~~~e~----~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~----------------e~~~~~~~~~~s~ 512 (1822)
T KOG4674|consen 453 NQKIQKLEK----ELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELD----------------ELRKGSKITVSSD 512 (1822)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhhhcccCcc
Confidence 776666554 33333333333333333110 0011 11122222111 1111111111111
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001296 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1106)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1106)
.-..--+-+...--+...|....+.-+.+.+.-- .+++.--.+.-.+.-. -..+.|.=.+++++....+..+++.|+
T Consensus 513 ~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~-~vR~Lae~lE~~E~~~--~~~~~~~~k~~~~~a~e~i~~L~~~l~ 589 (1822)
T KOG4674|consen 513 STENESDSEEIISERLVEFSNINELQEKNVELLN-AVRELAEKLEAAEKTQ--DKTLQNILKETINEASEKIAELEKELE 589 (1822)
T ss_pred ccccCccHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122223334444444444443322211 1111111111111110 122334444555555556666666665
Q ss_pred HHhhcHHHHHHHH-------hhhhhh----hhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHH--hhhhhHHHHHHH
Q 001296 273 ASRANVEEKFKAL-------NEEKSN----LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL--ASKESNEIQKII 339 (1106)
Q Consensus 273 e~kkkie~~~~~L-------k~ke~d----l~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL--~aRE~~EIQKLl 339 (1106)
+-...|+.-.... -.-+++ .+....+.+..... +|.-|..|+.-| .-+|+.++.+++
T Consensus 590 e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~----------~e~~l~qLe~~le~~~~E~~~~~~~l 659 (1822)
T KOG4674|consen 590 EQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA----------KEKRLRQLENELESYKKEKRENLKKL 659 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554432221 122222 12222222222222 333444444433 346777777777
Q ss_pred HHhHHHHhhhhhHHHHHHHH----------HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhh---hHHHHHHHHHHh
Q 001296 340 ANHESALRVKQSEFEAELAI----------KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH---DLEVQSRALVDK 406 (1106)
Q Consensus 340 deh~a~L~~Kk~EFElElE~----------kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREq---aLe~k~~~lkEK 406 (1106)
.++-..|..-+...-.+++. +-+.+.+.|...+++++--+.--.....-+.+-++ .+-..+-...+|
T Consensus 660 ~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k 739 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEK 739 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 77777766555544444332 33445555555555555433333444455555555 455556666778
Q ss_pred hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHhhh-h
Q 001296 407 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD-----------EKKKQVNCAKDKL-E 474 (1106)
Q Consensus 407 Ekdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e-----------~q~~qi~ee~E~L-k 474 (1106)
=.-+++-+..||.--..|+..++.|-.+...|.+++.+++.+-..++-+...++ .+...+..+-..| +
T Consensus 740 ~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~ 819 (1822)
T KOG4674|consen 740 LEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKK 819 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999998877777665544332 2333333322222 2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001296 475 AMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1106)
Q Consensus 475 iteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1106)
-++++.+++-.|...+...+..++.+...+..+.+.+..+-..-...-..|--|-.+|.+.++...-+...+-
T Consensus 820 klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 820 KLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 3678899999999999999999999999999999999999999999999999999999998887766555443
No 42
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=15 Score=47.52 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH
Q 001296 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 438 (1106)
Q Consensus 359 ~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L 438 (1106)
++++++..|++..-..-+.-|+=....+++...-..-.==++=.+.-.-.++...+..++.-=.++...-.+- -..+
T Consensus 181 ~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~---e~ei 257 (1141)
T KOG0018|consen 181 KKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKK---EREI 257 (1141)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001296 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518 (1106)
Q Consensus 439 ~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekF 518 (1106)
..-+.+.-++-.++.++-..+..+..++.+-.+-+++-++= +.++-.|......-.-..+.+..++..-++|
T Consensus 258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~--------~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ 329 (1141)
T KOG0018|consen 258 RVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENA--------SHLKKRLEEIEKDIETAKKDYRALKETIERL 329 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhh--------ccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh---hhh
Q 001296 519 EAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE---HSE 592 (1106)
Q Consensus 519 E~EWE~LDEKRael~KEa~~I~eEre---~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE---~s~ 592 (1106)
+++|..++-++++..+|.+.....|- ++..-...|.+||+.+-...- ..+|+.|++...+=-++..|+ +..
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~e 406 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAE 406 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001296 593 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (1106)
Q Consensus 593 ~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~E 672 (1106)
+.+++...+.+. ..+.+++..+.-...+-.+..++.+ ..+.-+-++...+..+.-+...|+...-..
T Consensus 407 lE~r~k~l~~sv------------er~~~~~~~L~~~i~s~~~~~~e~~-~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 407 LEARIKQLKESV------------ERLDKRRNKLAAKITSLSRSYEELK-HDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHhhhh
Q 001296 673 RMEINMDR 680 (1106)
Q Consensus 673 R~Ei~~~k 680 (1106)
=-+...++
T Consensus 474 l~das~dr 481 (1141)
T KOG0018|consen 474 LLDASADR 481 (1141)
T ss_pred HHhhhhhh
No 43
>PRK12704 phosphodiesterase; Provisional
Probab=95.12 E-value=0.29 Score=58.27 Aligned_cols=65 Identities=31% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001296 358 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (1106)
Q Consensus 358 E~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1106)
...+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|.
T Consensus 56 ke~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le 120 (520)
T PRK12704 56 KEALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120 (520)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444466666665554 4455556666666665555554444444444444444444433333
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.02 E-value=9.6 Score=44.63 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=51.3
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001296 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 534 (1106)
Q Consensus 455 ~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~K 534 (1106)
.++.++.++..+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555555555555555555665555566666666666666666666666666666666654444444444444
Q ss_pred HHHHHHHHH
Q 001296 535 EAERVAVER 543 (1106)
Q Consensus 535 Ea~~I~eEr 543 (1106)
++..+..++
T Consensus 387 ~l~~~~~~~ 395 (562)
T PHA02562 387 ELDKIVKTK 395 (562)
T ss_pred HHHHHHHHH
Confidence 444444333
No 45
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.89 E-value=0.36 Score=57.41 Aligned_cols=71 Identities=28% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001296 358 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1106)
Q Consensus 358 E~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1106)
...+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-+.|..+++.|..-++++
T Consensus 50 ke~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666665555 4455566666666666665555555555555555554444444444444433
No 46
>PRK00106 hypothetical protein; Provisional
Probab=94.85 E-value=1.2 Score=53.52 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=21.7
Q ss_pred CcchhhhhhcccccccchhhhhhccccccccchhhhhhccC
Q 001296 860 SENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRV 900 (1106)
Q Consensus 860 ~~~~~~~~~~~les~~~~~~n~~~~~~~~~~~~~agrkrr~ 900 (1106)
|+....+++-+||.- ||+.--+ -.--++||||-=||
T Consensus 452 s~~~~i~rl~~lE~i----a~~~~gV-~~~yaiqaGREiRv 487 (535)
T PRK00106 452 SMENYIKRLRDLEEI----ANSFDGV-QNSFALQAGREIRI 487 (535)
T ss_pred CHHHHHHHHHHHHHH----HhcCCcH-HHHHHHhcCCeEEE
Confidence 345667777777643 3333111 23457999999886
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.50 E-value=16 Score=44.67 Aligned_cols=311 Identities=17% Similarity=0.184 Sum_probs=171.1
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001296 130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 205 (1106)
Q Consensus 130 LEKAL~emr----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~Lr 205 (1106)
|+.-+..+| .+...||+.++.=++.|.-+|+.+...-..++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 344444444 4778999999999999999999998888777777666555555443332222
Q ss_pred HHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001296 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1106)
Q Consensus 206 RerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L 285 (1106)
++...--|+++.+|...|-+.+.-++-.++.+..=++.....-+...++..+|..+++-++.+...-
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1222234677888888888888888888888777777777777788888888888888887775443
Q ss_pred hhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhHHHHHHHHHhhh
Q 001296 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL 363 (1106)
Q Consensus 286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~EFElElE~kRKs 363 (1106)
.+-...+..-+..|.-. ...=+.++.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33332222222222111 11222333322221 12221 1111110 011122222344566667777777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001296 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1106)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKE 443 (1106)
++.=.+.|+.++...=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777776653100000 01111112222222222222233333444555556666666677766666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001296 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 499 (1106)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 499 (1106)
..+..=++.+...+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 6655544444444444444444443 444455555788889999985
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.50 E-value=26 Score=47.23 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=75.5
Q ss_pred HHhHHHHHHHHHhhhhhhhhhh-hhh-----h---------------hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001296 127 IASLEKAVHEIRAESAETKVAA-DSK-----F---------------AEARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1106)
Q Consensus 127 VadLEKAL~emr~E~AeiK~ts-esK-----L---------------aEA~aLv~~~eeKslEvE~KL~aAeak~AEa~R 185 (1106)
|.+|+.+|++.|--.-.||++. +.. + .+-+.|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4567777777666666666543 111 1 1222333333 2233566666666666666
Q ss_pred chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHh
Q 001296 186 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 265 (1106)
Q Consensus 186 k~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~ 265 (1106)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777776665543322222 222223344444455555555555555555555555555555555
Q ss_pred HhHHHHHHHhh
Q 001296 266 RKEKELEASRA 276 (1106)
Q Consensus 266 ~kEkeLEe~kk 276 (1106)
..+.++..++.
T Consensus 387 elEeeLeeLqe 397 (1486)
T PRK04863 387 AAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 49
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.39 E-value=0.96 Score=47.60 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001296 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (1106)
Q Consensus 356 ElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1106)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666555555555555555555555444443
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.04 E-value=11 Score=41.18 Aligned_cols=92 Identities=22% Similarity=0.260 Sum_probs=61.3
Q ss_pred HHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 001296 598 QQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEIN 677 (1106)
Q Consensus 598 q~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~ 677 (1106)
+.|=..+-..|..-..+|+. ++.+-..+|+.+.+-+..|. .++...+........++.+++.++.+.-.|-+++-
T Consensus 215 ~~E~~~~r~~~~~l~~el~~-l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELES-LRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhc-cccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 33333333344333333332 44555666666666665555 44455555666678899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHH
Q 001296 678 MDRQRRDREWAELNNSI 694 (1106)
Q Consensus 678 ~~ke~le~e~~EL~~ls 694 (1106)
--|-.|+-+++.-..|.
T Consensus 290 ~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 290 DVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 99999999988876664
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.04 E-value=16 Score=42.90 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001296 434 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513 (1106)
Q Consensus 434 ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~ 513 (1106)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 3444444444444444444444443333333333333333333322 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001296 514 EKAKFEAEWEMIDEKREELRKEAERV 539 (1106)
Q Consensus 514 eKekFE~EWE~LDEKRael~KEa~~I 539 (1106)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 52
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=26 Score=44.50 Aligned_cols=175 Identities=19% Similarity=0.328 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH----------HHHHHHhHHhh
Q 001296 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVV----------RAQKLELMVET 508 (1106)
Q Consensus 439 ~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~----------R~Qke~LlkEa 508 (1106)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++-- |...++=-+|.
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888999999999999999999999998888888888877776666555432 22233334444
Q ss_pred HHHHHHHHHHHH----HHhhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----------HHh
Q 001296 509 DKLQLEKAKFEA----EWEMIDEKREEL----RKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ----------HKR 570 (1106)
Q Consensus 509 d~Lk~eKekFE~----EWE~LDEKRael----~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~----------~kr 570 (1106)
++...-|+-.|+ |||-. +|.++ .+|.+.|.-++.+...+.. |.+-|.-....+... .+.
T Consensus 396 e~rEaar~ElEkqRqlewEra--r~qem~~Qk~reqe~iv~~nak~~ql~~-eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERA--RRQEMLNQKNREQEWIVYLNAKKKQLQQ-ELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 444444444443 78764 33333 4566667666655544433 555555444444332 244
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 001296 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEK 621 (1106)
Q Consensus 571 elEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqk 621 (1106)
+++.+.-.++--|+.|.| +.-+|| |-..+|.-+--.|..|+..+..
T Consensus 473 ~ie~~~~q~e~~isei~q----lqarik-E~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQ----LQARIK-ELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHhhhHHHHHHHHHHH----HHHHHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence 666666666655555543 433433 3344444444455555555443
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.94 E-value=26 Score=42.10 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=78.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001296 423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502 (1106)
Q Consensus 423 sLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke 502 (1106)
.|.+..++|+.-+..|.+=++++..|...++.++.+++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777777778888888888888888888888888777777777776665554333 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001296 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 582 (1106)
Q Consensus 503 ~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF 582 (1106)
....+..+.+. .|..|--.-.++..|++....+.. ....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222221 222222223333333333221111 1224555566666666655555545555555555
Q ss_pred HHhhh
Q 001296 583 MNKMV 587 (1106)
Q Consensus 583 ~~kMe 587 (1106)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44443
No 54
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=46 Score=43.94 Aligned_cols=152 Identities=19% Similarity=0.271 Sum_probs=88.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001296 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (1106)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~ 551 (1106)
+....+.++.++-+--.+.++....+-.....|+|+.+..+-++..|++.-|-.+..-+..+.|...+.+..+..++-+.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666767777778888888888888888888888888777777777777777777777777766555555554
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHh---hhhhHhhhhhhHHHHHHHHHHHHh
Q 001296 552 DERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF---LLGIEMQKRDLENCIEKRREELES 628 (1106)
Q Consensus 552 ~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~---l~d~EmqkreLE~~iqkRqEEiE~ 628 (1106)
...+.|+++=.+. +-+++.-...|. -|..++..-|+.+ --++++-. ...+...++.++..+
T Consensus 465 e~~~~l~~~t~~~-----------~~e~~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk~ 528 (1293)
T KOG0996|consen 465 EILDSLKQETEGI-----------REEIEKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELKG 528 (1293)
T ss_pred HHHHHHhhhhhhh-----------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444554444444 444444433333 3333333333322 12222222 223445566666666
Q ss_pred HHHHHHHHHHH
Q 001296 629 SFREREKAFEE 639 (1106)
Q Consensus 629 ~L~EREk~FEe 639 (1106)
.|..-.....+
T Consensus 529 ~L~~~~~~~~e 539 (1293)
T KOG0996|consen 529 KLLASSESLKE 539 (1293)
T ss_pred HHHHHHHHHHH
Confidence 66554444433
No 55
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.04 E-value=19 Score=38.42 Aligned_cols=143 Identities=19% Similarity=0.285 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001296 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1106)
Q Consensus 480 R~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1106)
|..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|.....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~-------- 93 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA-------- 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 445667778899999999999999999999999999999999999999999999988876655544433321
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001296 560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 635 (1106)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~---~kMehE~s~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEEiE~~L~EREk 635 (1106)
.+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ .+-++++...+...|..|+.
T Consensus 94 ---rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 94 ---RLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred ---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23555666666666554 3444555555544442 233332 22222 33455666666666666666
Q ss_pred HHHH
Q 001296 636 AFEE 639 (1106)
Q Consensus 636 ~FEe 639 (1106)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.25 E-value=39 Score=38.68 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001296 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 446 (1106)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~ 446 (1106)
..|..++..+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666655555554
No 57
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.99 E-value=8.9 Score=40.53 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=39.3
Q ss_pred HHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001296 374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1106)
Q Consensus 374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 432 (1106)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777776666666666666655555553
No 58
>PRK12705 hypothetical protein; Provisional
Probab=89.92 E-value=18 Score=43.86 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhh
Q 001296 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1106)
Q Consensus 357 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1106)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555 44566666666666666666666655555544444443
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.56 E-value=63 Score=40.04 Aligned_cols=216 Identities=18% Similarity=0.199 Sum_probs=119.0
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001296 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1106)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~ 333 (1106)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34445666666777777776666666666555555555555555554444444444444444444322222110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHH
Q 001296 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1106)
Q Consensus 334 EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1106)
.+|.+++. -..|..++..+.+..|.-+.++++.=+.... .++-+.-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~--------------~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS--------------NRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------hcchHHHHHHHHHHHHHHHHHHH
Confidence 22333322 2334555556666666655555544332222 22222223334444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001296 414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484 (1106)
Q Consensus 414 sk~LKEkEksLkaeEK~le~e---------k~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l 484 (1106)
...++.|+...+...+.++.- ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444333333221 23445555678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001296 485 VLEIK 489 (1106)
Q Consensus 485 rLQse 489 (1106)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.38 E-value=72 Score=39.21 Aligned_cols=18 Identities=6% Similarity=0.040 Sum_probs=11.7
Q ss_pred CCCCcHHHHHHHHHccCC
Q 001296 20 SPLSDESIWKRLKEAGLD 37 (1106)
Q Consensus 20 ~~~~d~~iWkr~~eaG~D 37 (1106)
++.|-..+-..++-+=|+
T Consensus 37 Ng~GKttll~ai~~~LyG 54 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALYG 54 (650)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 667777777777654333
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.54 E-value=4 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 001296 619 IEKRREELESSFREREKAFEEEK 641 (1106)
Q Consensus 619 iqkRqEEiE~~L~EREk~FEeek 641 (1106)
..+|..-+--.+..+-..|-+--
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667888888887664
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.45 E-value=1.2e+02 Score=40.64 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001296 125 ECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1106)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1106)
+-++++|.-.+++++.+...|... +-|.. .-.+-++....+++.|+.-.+++.-.+.|..+...+-|.+.....+
T Consensus 458 ~~~~~~~~~~keL~e~i~~lk~~~-~el~~--~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 458 QAVAELEEMDKELEETIEKLKSEE-SELQR--EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666555554221 11110 1122233334444444444444444444444444444444433333
No 63
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.30 E-value=6.9 Score=48.27 Aligned_cols=69 Identities=30% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 001296 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325 (1106)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE 325 (1106)
|+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444433 3456788888888888888887778887777777777777777654
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.80 E-value=72 Score=36.53 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001296 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1106)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki 475 (1106)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44555666666666777777766665555555555555555555555555555555555555555554444443333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001296 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1106)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1106)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555444 34445556667888999999999999999999999999999888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001296 556 SLRQERDAMRDQH 568 (1106)
Q Consensus 556 rLK~EK~~~r~~~ 568 (1106)
+||..-..++...
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.09 E-value=72 Score=36.17 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001296 494 LDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1106)
Q Consensus 494 Id~~R~Qke~LlkEad~Lk~eKekFE~EW 522 (1106)
|+.++.+...+....+.+..++..+..+=
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 66
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.90 E-value=1.1e+02 Score=37.77 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001296 658 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQR 701 (1106)
Q Consensus 658 E~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~LK~QR 701 (1106)
.+.++.-++..++++..++..+...+.+++..+...++.++.+-
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555444444433
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.71 E-value=1.6e+02 Score=39.55 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001296 957 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 995 (1106)
Q Consensus 957 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 995 (1106)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 3566777777777777773 2234667889999999974
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.43 E-value=1.8e+02 Score=38.52 Aligned_cols=130 Identities=20% Similarity=0.275 Sum_probs=86.8
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHH
Q 001296 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 206 (1106)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrR 206 (1106)
|.+.++.|.....++-. .+-|++.+..=+.....+.-++..|+-.-+|+.+++.......+..+...-+.-++++|
T Consensus 276 V~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344455444444433 23345556666666666666666777777777778888888888888888888889999
Q ss_pred HHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHH-HHHHhhhhhhhHhhHhh
Q 001296 207 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSK 260 (1106)
Q Consensus 207 erlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL-~e~q~~LNqREe~~~e~ 260 (1106)
+-.-+..+..-.+..|.+-+......+|.+-..+.++ -.++..+-++++.++-.
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 8888888877777777777777777777777776666 44444444444444333
No 69
>PRK09039 hypothetical protein; Validated
Probab=82.27 E-value=1e+02 Score=35.53 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=73.2
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001296 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1106)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1106)
|=-.|+.+...-++|+-.|.+|+..+.. +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998882 333333333333322222335666666666666666666677777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHH
Q 001296 196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 233 (1106)
Q Consensus 196 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe 233 (1106)
-+-+.=.+||.++-++.++..+.+......+..+.+.+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666655544433333333
No 70
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.90 E-value=70 Score=32.73 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=66.4
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhH
Q 001296 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261 (1106)
Q Consensus 182 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~ 261 (1106)
.|.-+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-...|.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667778888888888888888888888888888888888888888888888887776554 233
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 001296 262 QELSRKEKELEASRANVEEKF 282 (1106)
Q Consensus 262 ~~l~~kEkeLEe~kkkie~~~ 282 (1106)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445666777776666554443
No 71
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.61 E-value=2.1e+02 Score=37.93 Aligned_cols=109 Identities=23% Similarity=0.336 Sum_probs=63.5
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhH
Q 001296 605 LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRD 684 (1106)
Q Consensus 605 l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le 684 (1106)
+.||.-+=--+-+.||+-.-.....++..+. -..|++.|+--+-.+...++....++..+...+-.+.....-++
T Consensus 694 i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~-----l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 694 IEDIDQKIDQLNNNMQKVENDRNAFKREHEK-----LKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344333333444444444444444444332 24577777777777777777777776666666666555554444
Q ss_pred HH----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 001296 685 RE----------------WAELNNSIEELMVQRQLLHADREEIQAESERL 718 (1106)
Q Consensus 685 ~e----------------~~EL~~lse~LK~QRE~~~~ERe~fl~~vEkl 718 (1106)
.+ ..-|+.-|.+|..+=-.+.++|.++..-.-.+
T Consensus 769 ~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~l 818 (1200)
T KOG0964|consen 769 SELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTAL 818 (1200)
T ss_pred HHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23377777778877777888887765544333
No 72
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.20 E-value=1.4e+02 Score=37.19 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=38.7
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH--------hhhhHHHhhhhhHHHHHHhHhhhhhhHH
Q 001296 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA--------ERKLQEVVAREDDLSRRIASFKADCEEK 218 (1106)
Q Consensus 147 tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~a--------eRKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1106)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++... +.+|.++..+-...+-++....+-....
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666667777777777777666655544332 2344444444444444444444433333
Q ss_pred H
Q 001296 219 E 219 (1106)
Q Consensus 219 E 219 (1106)
+
T Consensus 264 ~ 264 (754)
T TIGR01005 264 K 264 (754)
T ss_pred H
Confidence 3
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.11 E-value=2.3e+02 Score=38.20 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=100.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 001296 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (1106)
Q Consensus 222 ~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~ 297 (1106)
|..--.+|..-+-+|....--+.-+.. |-++-+++.+....++.. ..-|+++..-....-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333334455555555444333333332 334444555444443332 234555665555666666666666655555
Q ss_pred HHhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHH
Q 001296 298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368 (1106)
Q Consensus 298 ~l~~rEee~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEl 368 (1106)
.|+.-.+++...+ ..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5554444443333 33444444444444443 356677888887765544444455666 6766666666655
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhhh----hhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001296 369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1106)
Q Consensus 369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1106)
+.|..... .-..+=++|..+ =.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55533221 111111222211 123344555666666555555555555555554444444
No 74
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.91 E-value=45 Score=32.12 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001296 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1106)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKE 443 (1106)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+ ....-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~----------~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE----------AKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888888888888877766654433333 3333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 001296 444 EVNIIKSDLQKSLSSLDEK 462 (1106)
Q Consensus 444 el~~lK~dlEK~~a~~e~q 462 (1106)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554433
No 75
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.66 E-value=2.4e+02 Score=38.16 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=75.3
Q ss_pred hhhhccchhheehhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHh
Q 001296 62 EHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA 139 (1106)
Q Consensus 62 dYQynMGLLLiEkKEwtSK~EeLkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~ 139 (1106)
|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..
T Consensus 711 dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 711 DGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred CCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788775 7788 654 222 22222222 2345566666666777777767777788888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001296 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1106)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL 194 (1106)
+.+. |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+
T Consensus 778 e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 778 ELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 7777888888888877766666666666666655555555444444443
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.38 E-value=2.6e+02 Score=38.43 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHhhhhhHHHHHHHHHhh
Q 001296 333 NEIQKIIANHESALRVKQSEFEAELAIKYK 362 (1106)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~EFElElE~kRK 362 (1106)
..-++.++.+-..|..+..++|--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887766654
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.36 E-value=1.3e+02 Score=34.91 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=63.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHH
Q 001296 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 632 (1106)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~E 632 (1106)
=-+.|+++|..+--.|.++-|.|.-.=-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35567777777766666655555433333344455555555555555555555555555555666666666666644444
Q ss_pred H---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001296 633 R---EKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (1106)
Q Consensus 633 R---Ek~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~E 672 (1106)
+ |.+.|.+-+ +|...+-+-|.++..|...|+..
T Consensus 165 KVdlEn~LE~EQE-------~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 165 KVDLENTLEQEQE-------ALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223333322 34455667777777777777654
No 78
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.34 E-value=1.3e+02 Score=34.90 Aligned_cols=97 Identities=19% Similarity=0.409 Sum_probs=73.9
Q ss_pred HhHHhhHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHH---HHHhh
Q 001296 503 ELMVETDKLQLEKAKF----EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER----DSLRQERDAMRD---QHKRD 571 (1106)
Q Consensus 503 ~LlkEad~Lk~eKekF----E~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~----erLK~EK~~~r~---~~kre 571 (1106)
-|+|=.+.|+.+|+.+ |+|=|.|. ..|++-+..|-.++-.++..+..|. ++|......++. .++..
T Consensus 81 ~LlKkl~~l~keKe~L~~~~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 81 TLLKKLQQLKKEKETLALKYEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4666677777777766 55556665 4678888888888888888777655 566667777764 67788
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHH
Q 001296 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERA 602 (1106)
Q Consensus 572 lEsL~~ekEsF~~kMehE~s~~~eKiq~Era 602 (1106)
++.|..++=...+.+++|+-.++.+++.-=.
T Consensus 158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~ 188 (310)
T PF09755_consen 158 LERLRREKVDLENTLEQEQEALVNRLWKQMD 188 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988776443
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.05 E-value=1.9e+02 Score=36.67 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHH-HHhhhhHHHHhhhhH
Q 001296 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 418 (1106)
Q Consensus 357 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 418 (1106)
+-++|+-+|.|++.-++++-.+|-.+..+|..+ ..++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555556666666666666666666666655 222333 445556665555543
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.84 E-value=2.1e+02 Score=37.11 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHhh----hhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH
Q 001296 363 LAEDEIEKKRRAWELR----DLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 438 (1106)
Q Consensus 363 s~eeEle~K~~~~E~r----Evel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L 438 (1106)
..-++|+.|.+.|+.+ ..++++.|+.|..-.-.|+-.-... +.-.....+--+.|.++-+++-.++.-|
T Consensus 263 ~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~-------t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 263 ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR-------TRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-------HHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777653 3456666665544333333211111 1111222233344455555554444444
Q ss_pred HHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001296 439 QKEK-------EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQ 500 (1106)
Q Consensus 439 ~~dK-------Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Q 500 (1106)
+-+- +.+-....||||-++.....-+.|.+-.+ .-+++-.-++-||+++-++||.+...
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~---nve~elqsL~~l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKE---NVEEELQSLLELQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 44566778999999998888777765544 44566678888999999999977654
No 81
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.90 E-value=1.1e+02 Score=37.38 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.2
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001296 405 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1106)
Q Consensus 405 EKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1106)
+++++++.+-.-...||..-....+..+..+.++....+.+...+...++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666666666666665555555554433
No 82
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=77.04 E-value=2.2e+02 Score=36.32 Aligned_cols=461 Identities=17% Similarity=0.207 Sum_probs=216.2
Q ss_pred hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhH-------hHHHHHHHhhcHHHHHH
Q 001296 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSR-------KEKELEASRANVEEKFK 283 (1106)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~-------kEkeLEe~kkkie~~~~ 283 (1106)
+..|+-.+|++++.=---+.+-+-++++..--|.+.|..+|+=++..+.-...|+. +..+|+.++..+..+-.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666554444444444555555555555555555555555544444444 44455555544444333
Q ss_pred HHhhhhhhhhHhHHHHhh--hHH--HHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHHHHHhHHHHhhhhhHHHHH
Q 001296 284 ALNEEKSNLDLTLVSLLK--REE--AVIEREASLQKKEQKLLVSQETLASKE---SNEIQKIIANHESALRVKQSEFEAE 356 (1106)
Q Consensus 284 ~Lk~ke~dl~~rl~~l~~--rEe--e~~~~~~~Le~KEkELl~leEKL~aRE---~~EIQKLldeh~a~L~~Kk~EFElE 356 (1106)
+-+.-+.++......+.. .|+ .+.............+..|+-+++.=. +.|+|.+-. ++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~-----~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK-----NEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHH
Confidence 333333344333332221 111 112222222223333444555444322 244444322 22222333455
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhh------hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001296 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (1106)
Q Consensus 357 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~ 430 (1106)
|..+-..+++..+.+.. +|+++...-.-|++.. .-+++-.+.|+..+.+|... |.-+++.+.-.+-.
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~ 458 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ 458 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 55555555555544432 2333333322233222 33455555555566655544 33334444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001296 431 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSVLEIKLKEELDVVRAQKLE 503 (1106)
Q Consensus 431 le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-------teeER~E~lrLQseLKeEId~~R~Qke~ 503 (1106)
| -...+.=+.+-..++.++..++++..+-.+-..+... +.-+++....==.++.+-|...+.|.+-
T Consensus 459 l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 459 L-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred H-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3 3333333333333344444444333222222111111 1112222222223567788889999999
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhHHHHHHHHHHHHhhhhhhh
Q 001296 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD-------SLRQERDAMRDQHKRDVDSLN 576 (1106)
Q Consensus 504 LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e-------rLK~EK~~~r~~~krelEsL~ 576 (1106)
++++++.|......+-.|.+.+-+.-+.-.-|.++--...+.--+.+..|-. .|.+.-.+++.++.
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvE------- 604 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVE------- 604 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------
Confidence 9999999988888887777777665555555555433333222222211111 22233334444332
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh---hHHH
Q 001296 577 REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQIS---SLKE 653 (1106)
Q Consensus 577 ~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN---~lkE 653 (1106)
.+.-+...+.+|--.|-.++--|=.+.- -++..+-+-++|+++.= +.|++.-..=...|- .+-+
T Consensus 605 -nk~K~ieeLqqeNk~LKKk~~aE~kq~~--------~~eikVn~L~~E~e~~k----k~~eE~~~~~~keie~K~~~e~ 671 (786)
T PF05483_consen 605 -NKNKNIEELQQENKALKKKITAESKQSN--------VYEIKVNKLQEELENLK----KKHEEETDKYQKEIESKSISEE 671 (786)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhhhhHH
Confidence 2233334467777777776666554432 23333333333333321 122222221111111 1112
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001296 654 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQA 713 (1106)
Q Consensus 654 ~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~LK~QRE~~~~ERe~fl~ 713 (1106)
-+--|.+.+++-...-=+-..|+.+.++| -+++|+.|.++=|.|=+.++-+|+.=+.
T Consensus 672 ~L~~EveK~k~~a~EAvK~q~EtdlrCQh---KIAeMVALMEKHK~qYDkiVEEkDaEL~ 728 (786)
T PF05483_consen 672 ELLGEVEKAKLTADEAVKLQEETDLRCQH---KIAEMVALMEKHKHQYDKIVEEKDAELG 728 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22333444444333333445666666665 5899999999999999999999987554
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=74.53 E-value=1.5e+02 Score=33.23 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 001296 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (1106)
Q Consensus 2 ~~p~~~~l~---~~~g~rv~~~~~~d~~iWkr~~eaG~De~S~~rrD~~aLia~IskLE~ElydYQy 65 (1106)
.+|..|.++ |..|+.|-.+++= +.+|-..+ ..+...|.+.+..|..++..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899988654421 12344444 34667788888888887776543
No 84
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.38 E-value=1.1e+02 Score=33.68 Aligned_cols=130 Identities=22% Similarity=0.325 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001296 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1106)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE 523 (1106)
+|-.|+..+--.++.+.....++..-...+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444443221 1 24444544444455556666666666665555
Q ss_pred hhHHHHHHH---HHHH------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001296 524 MIDEKREEL---RKEA------ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 594 (1106)
Q Consensus 524 ~LDEKRael---~KEa------~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~ 594 (1106)
.|..--+.+ .... .....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444333332 0000 000001100 011223344333333 34555667788899999999999997
Q ss_pred H
Q 001296 595 T 595 (1106)
Q Consensus 595 e 595 (1106)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.19 E-value=1.1e+02 Score=33.94 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001296 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1106)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~E 521 (1106)
+.|..+..+..+....+......+..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777777666655555555544444433
No 86
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.39 E-value=1.2e+02 Score=31.49 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=64.7
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001296 468 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1106)
Q Consensus 468 ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1106)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444333222345567788888888999999999999999999999999999999999999997777776
Q ss_pred Hhhhhhhhh
Q 001296 548 KSLKDERDS 556 (1106)
Q Consensus 548 k~~~~E~er 556 (1106)
+.+.....+
T Consensus 87 k~lq~~q~k 95 (140)
T PF10473_consen 87 KELQKKQEK 95 (140)
T ss_pred HHHHHHHHH
Confidence 665544333
No 87
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.14 E-value=2e+02 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001296 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1106)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~R 185 (1106)
-..+.....-++....+++.+|..|+..+..--+
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554433
No 88
>PRK09039 hypothetical protein; Validated
Probab=72.39 E-value=1.9e+02 Score=33.41 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001296 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1106)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eK 515 (1106)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666655544
No 89
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.99 E-value=43 Score=33.61 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001296 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1106)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1106)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666555554444 447788889999999999999999999999999888888776
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.27 E-value=3.7e+02 Score=35.85 Aligned_cols=86 Identities=21% Similarity=0.164 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001296 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (1106)
Q Consensus 441 dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~ 520 (1106)
+.+.+..+-.......+..++-.-+|......|.-..-|.+-+.-+-.+||+++-+|=-|-..+..=++.|.+.+-..|.
T Consensus 465 e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ 544 (1195)
T KOG4643|consen 465 ENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEE 544 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455555555555556666666666666666666666666666666789999999999999998889999999888888
Q ss_pred HHhhhH
Q 001296 521 EWEMID 526 (1106)
Q Consensus 521 EWE~LD 526 (1106)
|-..|=
T Consensus 545 ENa~Ll 550 (1195)
T KOG4643|consen 545 ENAHLL 550 (1195)
T ss_pred HHHHHH
Confidence 877664
No 91
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.67 E-value=2.9e+02 Score=34.39 Aligned_cols=289 Identities=21% Similarity=0.278 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001296 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1106)
Q Consensus 350 k~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1106)
+-=||+|+-.-|+.+++--..+ .+-+++|+...+.+.+-.+-++++ ++++.+==..+..+...|...+-
T Consensus 87 k~~ye~El~~ar~~l~e~~~~r----a~~e~ei~kl~~e~~elr~~~~~~-------~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARER----AKLEIEITKLREELKELRKKLEKA-------EKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHhhhhhhhhh
Confidence 4457777777777776543322 233445555555444444444444 33333333333334443333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q 001296 430 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 509 (1106)
Q Consensus 430 ~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad 509 (1106)
++..-+...-.=-+++.-||.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=..
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------ 222 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------ 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------
Confidence 33333333333334444555555566555555555555443 11233333334456666655433221
Q ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 001296 510 KLQLEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKD-ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 586 (1106)
Q Consensus 510 ~Lk~eKekFE~EW--E~LDEKRael~KEa~~I~eEre~lek~~~~-E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kM 586 (1106)
++.+++.+|..+- +.=|.=+.+|..=+.+|-.+=++...-=.. =+...+.+.++++-...+..-.....||+.+. |
T Consensus 223 eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~-~ 301 (546)
T KOG0977|consen 223 EIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR-I 301 (546)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH-H
Confidence 2233344444443 222333334444334443332222111110 11122222333332222222222223333221 1
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 001296 587 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 666 (1106)
Q Consensus 587 ehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~ 666 (1106)
. ..|-.=|++ |.|+|-.-. .+.++.+.++..|.+=-+.|+..-..- ..+|..|.-|+
T Consensus 302 R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec 358 (546)
T KOG0977|consen 302 R-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEIAKMREEC 358 (546)
T ss_pred H-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHH
Confidence 1 111111111 124444433 455677788888888888888643221 24556666677
Q ss_pred HHhHHHHHHHhhhhhhhHHH
Q 001296 667 KRLDLERMEINMDRQRRDRE 686 (1106)
Q Consensus 667 ~rLe~ER~Ei~~~ke~le~e 686 (1106)
..|-.|.+.+--.+.-|+-+
T Consensus 359 ~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 359 QQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred HHHHHHHHHhhchHhHHHhH
Confidence 77777777777777777765
No 92
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.66 E-value=93 Score=34.40 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001296 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQL 703 (1106)
Q Consensus 628 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~LK~QRE~ 703 (1106)
..++.+-..|+.-+..-++.+.+++..- +=+++..-|+..|..||+.....-..-..++..|...|..++..|..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999888765 67888888888888888888777777778888888888888877764
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.56 E-value=70 Score=36.43 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=4.1
Q ss_pred ccccccCCC
Q 001296 844 PVRYSFGEP 852 (1106)
Q Consensus 844 ~irya~gep 852 (1106)
||++.|+.|
T Consensus 279 si~~~~~~~ 287 (314)
T PF04111_consen 279 SIKLQFNSE 287 (314)
T ss_dssp ES-STTS-H
T ss_pred eeeecCCCh
Confidence 666666544
No 94
>PRK12705 hypothetical protein; Provisional
Probab=68.02 E-value=3e+02 Score=33.90 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHH
Q 001296 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1106)
Q Consensus 350 k~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1106)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...|..+++++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555544333 222444444444444444444444444444444444444443
No 95
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.36 E-value=77 Score=36.11 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001296 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1106)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk 512 (1106)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666777777777777777777665
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.13 E-value=1.5e+02 Score=36.11 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001296 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1106)
Q Consensus 492 eEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1106)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888877777776665544 45556666677777777666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001296 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 623 (1106)
Q Consensus 572 lEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRq 623 (1106)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 6665554443332 33477777776655554443
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.97 E-value=1.8 Score=53.06 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHH-------h----chHHHHHHHHHHHHHHHHHHhhhhhhhHhhHh
Q 001296 191 ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILS 259 (1106)
Q Consensus 191 eRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qR-------e----~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e 259 (1106)
..+.++++..-..|+.++-++..+.......+..-- . .+.++..++...++.+......+..=..++..
T Consensus 192 ~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~ 271 (713)
T PF05622_consen 192 AQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777766655443333211 1 12333444444444333222112222222233
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001296 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1106)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1106)
....+..+..+.+++...-+ +..+|+++-|-+..+...+...|.++...+..|+ ++-.+. ..+ +.|
T Consensus 272 le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe----d~~~lk--------~qv-k~L 337 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLE----DLEDLK--------RQV-KEL 337 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HHH-HHH
Confidence 33334444444444333322 4566777777766666666666665555554332 222222 122 456
Q ss_pred HHhHHHHhhhhhHHHHHHHH
Q 001296 340 ANHESALRVKQSEFEAELAI 359 (1106)
Q Consensus 340 deh~a~L~~Kk~EFElElE~ 359 (1106)
.++++.|--.+..+|-++..
T Consensus 338 ee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 338 EEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778777777777777743
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.99 E-value=2.5e+02 Score=31.55 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhH
Q 001296 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1106)
Q Consensus 339 ldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1106)
||-...-|..+..++.-.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333332 33455666666777777777777777776666665555555544444
No 99
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=62.41 E-value=1.9e+02 Score=32.02 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=51.6
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHH
Q 001296 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1106)
Q Consensus 162 ~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee 241 (1106)
|+.+-.+.+.+|...+.....+.........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566655555555555555555555444444444444444444333333332222222211111222222333
Q ss_pred HHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH
Q 001296 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1106)
Q Consensus 242 RL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~ 282 (1106)
.+.+.+..+.+-.+-...++.....++.+|..++.....+.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555556666665555444443
No 100
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.82 E-value=1.5e+02 Score=34.84 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHHHHHh
Q 001296 45 DKAALIAYIAKLETEIF 61 (1106)
Q Consensus 45 D~~aLia~IskLE~Ely 61 (1106)
...+|-+.+++|++++.
T Consensus 105 ~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 105 QLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777664
No 101
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.91 E-value=2e+02 Score=31.85 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=55.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001296 473 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 548 (1106)
Q Consensus 473 LkiteeER~E~lrLQseLKeEId~~R~Qke---~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek- 548 (1106)
++-...=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777777777777665543 3456666777777776666666666665555555555544443322
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q 001296 549 --SLKDERDSLRQERDAMRDQ 567 (1106)
Q Consensus 549 --~~~~E~erLK~EK~~~r~~ 567 (1106)
.++.|...||.+-+.||..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555555555544
No 102
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=59.89 E-value=2.8e+02 Score=32.37 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=97.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001296 448 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1106)
Q Consensus 448 lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDE 527 (1106)
|-..|+.-...|.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+++++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455556666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001296 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1106)
Q Consensus 528 KRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 579 (1106)
+--.|..=+.+|..==.-++|+++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999899988777777777766554 577888888888888777643
No 103
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.36 E-value=88 Score=35.09 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=66.6
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001296 480 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 554 (1106)
Q Consensus 480 R~E~lrLQ-----seLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~ 554 (1106)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887665543 455
Q ss_pred hhhHHHHHHHHH
Q 001296 555 DSLRQERDAMRD 566 (1106)
Q Consensus 555 erLK~EK~~~r~ 566 (1106)
.+|+.--+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 666665555443
No 104
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.01 E-value=4.2e+02 Score=36.12 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=88.3
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001296 111 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (1106)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa 183 (1106)
-+-|.|+--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 45578999999999999999999963 32 2333322222222233333333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHH-----H---------HHHHHHHhh
Q 001296 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 249 (1106)
Q Consensus 184 ~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~-----e---------eRL~e~q~~ 249 (1106)
.+|.. + -|=+.+|.+|.-+...+-.++|+.|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 23344555566666666666777776666666532 1 244444445
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001296 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1106)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1106)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777778888888888888777776
No 105
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.44 E-value=1.4e+02 Score=37.39 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=50.5
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001296 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1106)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1106)
.+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455556666677777777888888888888888877776 455566777888888888887776544
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.80 E-value=4.3e+02 Score=32.01 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001296 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1106)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~E 521 (1106)
..|...+..|+--++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+.++-|.+
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333344444444444444445555566666655543 446777777777888888888888888888777654
No 107
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=55.57 E-value=2.7e+02 Score=29.22 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhh---------HHHHHHHHHHhchHHHHHHHH
Q 001296 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE---------EKEREIIRERQSLSDRKKILQ 237 (1106)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~e---------a~E~~~~~qRe~L~eweKkLq 237 (1106)
..|+..|...+.++.++...+.+++..+.. .++.+.-.|..++- =.+..|..+++.+..|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 445566666667777777777777777754 36777777776643 246678899999999998764
No 108
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.57 E-value=4.7e+02 Score=31.74 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=9.1
Q ss_pred hHHHHHHHHHhhhh
Q 001296 708 REEIQAESERLKKL 721 (1106)
Q Consensus 708 Re~fl~~vEklK~c 721 (1106)
+.-|...+..|+.|
T Consensus 429 ~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 429 PRPFEDELRALKEL 442 (582)
T ss_pred CCCHHHHHHHHHHh
Confidence 35666666666666
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.69 E-value=3.3e+02 Score=29.34 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=53.1
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001296 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1106)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1106)
+.+...++......+....+.++..+..++.-+..|......+...........+.+......+...+..|..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555555333334444455566666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001296 330 KESNEIQKIIA 340 (1106)
Q Consensus 330 RE~~EIQKLld 340 (1106)
+-+.-++.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 110
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.61 E-value=3.5e+02 Score=29.14 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=89.4
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhh
Q 001296 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1106)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~e----ae~~lKR 97 (1106)
.+|+||..+. ++..--+--|+. .|--+|-.++..|-...-.+.-++-.++-..-+|+++...++. |+.+|+.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899998765 566666778999 8888999999999999999999999999999888888776553 3444432
Q ss_pred hhh-hhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh
Q 001296 98 DRA-SHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD 149 (1106)
Q Consensus 98 Eqa-Ahl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tse 149 (1106)
-.- ----||. .++..=..|...+.--+.-|..|..-|+.|+..+.++|..-.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222 223344556666777778888899999999998888876544
No 111
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.04 E-value=5.2e+02 Score=31.89 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhHHh
Q 001296 306 VIEREASLQKKEQK 319 (1106)
Q Consensus 306 ~~~~~~~Le~KEkE 319 (1106)
++.++.+.+.||.+
T Consensus 194 ~~~rk~m~D~KEre 207 (489)
T PF05262_consen 194 IDKRKDMVDIKERE 207 (489)
T ss_pred hhhhhhhHHHHHHH
Confidence 33344444444443
No 112
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.43 E-value=5.8e+02 Score=31.27 Aligned_cols=173 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHH----HHHHHHHHhhhhH
Q 001296 346 LRVKQSEFEAELAIKY-----------KLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE----VQSRALVDKEKDL 410 (1106)
Q Consensus 346 L~~Kk~EFElElE~kR-----------Ks~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe----~k~~~lkEKEkdl 410 (1106)
|.-+|-.||.=++|.| +-++++--+|-.-+++-=.+--++|-.+.+-+-+|- +++++|.---..|
T Consensus 141 Lr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~L 220 (552)
T KOG2129|consen 141 LRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYL 220 (552)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHH
Q 001296 411 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK-SEAGELSVLEIK 489 (1106)
Q Consensus 411 ~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkite-eER~E~lrLQse 489 (1106)
..|+..=-----.+...-|.-...-..--+.+--|..|+++++..+.-+..-.++..+...++..-+ +-|.|..|||-+
T Consensus 221 q~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrk 300 (552)
T KOG2129|consen 221 QKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRK 300 (552)
T ss_pred HHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001296 490 LKEELDVVRAQKLELMVETDKLQLEKAKF 518 (1106)
Q Consensus 490 LKeEId~~R~Qke~LlkEad~Lk~eKekF 518 (1106)
|+.|++.--+--..|..-.--|...-++|
T Consensus 301 L~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 301 LINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
No 113
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.18 E-value=7.8e+02 Score=32.44 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001296 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1106)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1106)
-...++..-++|++.=+..-++++.|++.=++|+.++-..+..-.+...-.........+|..+ +.++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHH
Confidence 3445555566666666666677888888888888888877766665555555555555555444 34555555
Q ss_pred HHh
Q 001296 340 ANH 342 (1106)
Q Consensus 340 deh 342 (1106)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 444
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.78 E-value=4.2e+02 Score=29.19 Aligned_cols=171 Identities=19% Similarity=0.279 Sum_probs=102.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001296 429 KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (1106)
Q Consensus 429 K~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 508 (1106)
++|..+...|...-+-+....+-|---...+..+.+-+.++-+.-++.++|=.+ ||...-.+=.+..-|++.+
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq~ 90 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQA 90 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333344444444444555555555554432 3444444555677888888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 001296 509 DKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 588 (1106)
Q Consensus 509 d~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMeh 588 (1106)
-.|..+...+.++|+.|-+....|.-+...+... ...|-.++.+++.++- ..++|-+.|++|.+.--+
T Consensus 91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-----------~~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t~ 158 (193)
T PF14662_consen 91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-----------SKELATEKATLQRQLC-EFESLICQRDAILSERTQ 158 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-----------HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 8999999999999998888777777666655532 2344456666766652 578999999999887665
Q ss_pred hhhhHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 001296 589 EHSEWFTKIQQERADFLLGIEMQKRDLENCI 619 (1106)
Q Consensus 589 E~s~~~eKiq~Erad~l~d~EmqkreLE~~i 619 (1106)
--..+..-|. |-.....++-+-+..||.-|
T Consensus 159 ~i~eL~~~ie-Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 159 QIEELKKTIE-EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5555443333 33445556666666666554
No 115
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.40 E-value=5.3e+02 Score=30.24 Aligned_cols=203 Identities=27% Similarity=0.325 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001296 436 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 501 (1106)
Q Consensus 436 ~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l--------------rLQseLKeEId~~R~Qk 501 (1106)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4566666777777777777766666666666655544444433333222 12234444455555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001296 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA-----VERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 576 (1106)
Q Consensus 502 e~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~-----eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~ 576 (1106)
.-|..|.+.|++...--..+--+|-++-+..+-....+. .+|+.+=..+ +.++..- .++++++-++-
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~----~qLe~d~qs~l 153 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQI----EQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHH----HHHHHHHHHHH
Confidence 666666666655555555555555554444332222221 2333322222 1122111 23344555555
Q ss_pred hhHHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHH
Q 001296 577 REREEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLK 652 (1106)
Q Consensus 577 ~ekEsF~~kMehE~s~~~eKi---q~Erad~l~d~EmqkreLE~~-iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lk 652 (1106)
-++++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+||-.|
T Consensus 154 DEkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 154 DEKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 3444444443 445566665544433333332 233 5999999999999999999998888
Q ss_pred HHHH
Q 001296 653 EKAE 656 (1106)
Q Consensus 653 E~a~ 656 (1106)
.++.
T Consensus 224 ~~le 227 (319)
T PF09789_consen 224 SALE 227 (319)
T ss_pred HHHH
Confidence 7765
No 116
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.75 E-value=4.3e+02 Score=33.91 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=55.2
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001296 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (1106)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EI 335 (1106)
++++..+.+--=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444333333333333333333344445555555555666666666666666666667
Q ss_pred HHHHHHhHHHHhhhhhHHHHHHHHH
Q 001296 336 QKIIANHESALRVKQSEFEAELAIK 360 (1106)
Q Consensus 336 QKLldeh~a~L~~Kk~EFElElE~k 360 (1106)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666655544444333
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.60 E-value=4.7e+02 Score=29.44 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=20.9
Q ss_pred hhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q 001296 201 EDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1106)
Q Consensus 201 E~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~ 248 (1106)
...+..+...+.++...++.++..-+..+..++..+...+..+...+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444433333
No 118
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.40 E-value=7.7e+02 Score=31.86 Aligned_cols=152 Identities=25% Similarity=0.314 Sum_probs=91.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhh---HHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH
Q 001296 553 ERDSLRQERDAMRDQHKRDVDSLNRE---REEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 629 (1106)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~e---kEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~ 629 (1106)
-++.|=+|=.+..++|...+..|.-+ -....+.+.-|..-+....+.-+.+ .-++|++|..|= ++| +.
T Consensus 17 ~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~-~~~~e~~~~~lr-------~e~-ke 87 (717)
T PF09730_consen 17 REESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE-CEDLELERKRLR-------EEI-KE 87 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-------HHH-HH
Confidence 45667777777777777777665543 2233344444544444433333333 345666666663 333 33
Q ss_pred HHHHH-HHHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHHHHHhHHHHHHHhhhhhhhH--HHHHH--HHHHHHHHHH
Q 001296 630 FRERE-KAFEEEKMREFQQISSLKEKAE-----KELEQVTLEIKRLDLERMEINMDRQRRD--REWAE--LNNSIEELMV 699 (1106)
Q Consensus 630 L~ERE-k~FEeek~~EL~~IN~lkE~a~-----kE~Eev~lE~~rLe~ER~Ei~~~ke~le--~e~~E--L~~lse~LK~ 699 (1106)
++.|| +....=-+-|-+||+-+|.|.. =|+|-++.|.+||+-|=.-++..-+-.- ++++| |-...+.|+.
T Consensus 88 ~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ 167 (717)
T PF09730_consen 88 YKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS 167 (717)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454 3344445667789998888865 4667777777777776665555444332 44555 6677777999
Q ss_pred HHHHHHHhhHHHHH
Q 001296 700 QRQLLHADREEIQA 713 (1106)
Q Consensus 700 QRE~~~~ERe~fl~ 713 (1106)
.||+=++=|.++-.
T Consensus 168 EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 168 EREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987777776543
No 119
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.98 E-value=9.8e+02 Score=32.95 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 001296 603 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 682 (1106)
Q Consensus 603 d~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~ 682 (1106)
|-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..++.-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33556666677777777654 344444555556666666665544 556788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH-H-----HHHHHhhHHHHHHHHHhhhhhhHHhhHhhhhHhhhh--hcccchh
Q 001296 683 RDREWAELNNSIEELMVQ-R-----QLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHS 744 (1106)
Q Consensus 683 le~e~~EL~~lse~LK~Q-R-----E~~~~ERe~fl~~vEklK~ckncg~~~~~~vLSdlq--~sd~~~~ 744 (1106)
+-++..++..-+..++.+ | ......|..|+..---=.+|+++|....-.-.++|| ...|+.-
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887654 1 133455666665555555677877777555555566 5566543
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.88 E-value=7.3e+02 Score=31.14 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHhhhhhh
Q 001296 128 ASLEKAVHEIRAESAET 144 (1106)
Q Consensus 128 adLEKAL~emr~E~Aei 144 (1106)
...|.+|...+.++.-+
T Consensus 211 ~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 211 RDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34577777777766554
No 121
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=44.71 E-value=5.1e+02 Score=29.26 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001296 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (1106)
Q Consensus 492 eEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e-Ere~lek~~~~E~erLK~EK~~~r~~~kr 570 (1106)
+||+++-.|-.++.+....+......||++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888887777777766654 3556777777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001296 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1106)
Q Consensus 571 elEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 608 (1106)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 4555666665555566666555555554
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.20 E-value=5.2e+02 Score=29.19 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=53.8
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001296 505 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584 (1106)
Q Consensus 505 lkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~ 584 (1106)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444444555555555566666666666665566666666666666666555544 34567778888888
Q ss_pred hhhhhhhhHHHHHH
Q 001296 585 KMVHEHSEWFTKIQ 598 (1106)
Q Consensus 585 kMehE~s~~~eKiq 598 (1106)
+|--+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88866666655553
No 123
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.20 E-value=2.3e+02 Score=29.91 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001296 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1106)
Q Consensus 216 ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1106)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888888888888888888888888888888887777776665555555554444
No 124
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.60 E-value=2.2e+02 Score=26.47 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=50.0
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001296 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1106)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEK 528 (1106)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666665554 88888999999999999999999998888888877766543
No 125
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.19 E-value=7.1e+02 Score=30.48 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=60.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHh
Q 001296 207 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN 286 (1106)
Q Consensus 207 erlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk 286 (1106)
+..+-.++..+-..++.+-|..|..---.-.....+..+.... +..+...+..+-.+|..++.-++..+.+-.
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~-------a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSA-------AEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555544433211111112222222222 234555566666666666666666654433
Q ss_pred hhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001296 287 EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 327 (1106)
Q Consensus 287 ~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL 327 (1106)
+-+ ..++..+..++.....++..|...+++|..|...+
T Consensus 197 eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 197 EAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555556677777888888888888888887777
No 126
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.07 E-value=7.9e+02 Score=31.04 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001296 437 LLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 516 (1106)
Q Consensus 437 ~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKe 516 (1106)
.+...++....|+.|+.|..+.+.+-+.+-.+-...| ..|+.||+..=.+-+.|.++.|+||.+-+
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l--------------~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKL--------------EMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666655544333222221111 23444444444444555555555554332
Q ss_pred H--H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001296 517 K--F-EAEWEMIDEKREELRKEAERVAVERVVVSK 548 (1106)
Q Consensus 517 k--F-E~EWE~LDEKRael~KEa~~I~eEre~lek 548 (1106)
+ | -++.+.+--=|.+|.+++.+|.-++..+.+
T Consensus 326 ~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 326 LQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 123333333444455555555544444443
No 127
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.01 E-value=4.1e+02 Score=27.72 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHH
Q 001296 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (1106)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~ 311 (1106)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888877666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001296 312 SLQKKEQKLLVSQETLASKE 331 (1106)
Q Consensus 312 ~Le~KEkELl~leEKL~aRE 331 (1106)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 128
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.95 E-value=6e+02 Score=29.59 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 001296 616 ENCIEKRREELESSFREREKAFE 638 (1106)
Q Consensus 616 E~~iqkRqEEiE~~L~EREk~FE 638 (1106)
|..+-.+..+++..|..+.++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666655544
No 129
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=42.40 E-value=2.6e+02 Score=37.09 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.6
Q ss_pred hheehhhhhhhHHHH
Q 001296 70 LILEKKELASKYEQI 84 (1106)
Q Consensus 70 LLiEkKEwtSK~EeL 84 (1106)
+++|-=...+=++-|
T Consensus 91 IVMEY~~gGSL~~lL 105 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNI 105 (1021)
T ss_pred EEEeCCCCCcHHHHH
Confidence 556543333333333
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.87 E-value=5e+02 Score=28.38 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001296 488 IKLKEELDVVRAQKLELMVETDKLQLEK-------AKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (1106)
Q Consensus 488 seLKeEId~~R~Qke~LlkEad~Lk~eK-------ekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~ 551 (1106)
.+.-+.|+.+-.++..|..+.+.|..|. ...++-=..+....+.|+.....|..-+..+.-++.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443 333333344444444444444444444444444443
No 131
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.70 E-value=7e+02 Score=29.99 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=9.3
Q ss_pred ccCCCCCcccccCCCCCCC
Q 001296 811 KHSGENSVENDEEKSPTSD 829 (1106)
Q Consensus 811 k~SP~Kk~~~~~~~~p~S~ 829 (1106)
.+||+-++..+....|+|+
T Consensus 420 slspS~~ASSSlt~~pcSS 438 (561)
T KOG1103|consen 420 SLSPSLPASSSLTPRPCSS 438 (561)
T ss_pred ccCCCCcccccCCCCCCCC
Confidence 3566555555444444444
No 132
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.42 E-value=4e+02 Score=28.53 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 001296 446 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 483 (1106)
Q Consensus 446 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~ 483 (1106)
..++..++++...++.-...|...+..+..++..|.+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34445555555555555555555555555555555443
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.37 E-value=3.8e+02 Score=26.83 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001296 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1106)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EW 522 (1106)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555566666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001296 523 EMIDEKREELRKEAERVAV 541 (1106)
Q Consensus 523 E~LDEKRael~KEa~~I~e 541 (1106)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 134
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.24 E-value=4e+02 Score=28.56 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001296 490 LKEELDVVRAQKLELMVETDKLQLEK 515 (1106)
Q Consensus 490 LKeEId~~R~Qke~LlkEad~Lk~eK 515 (1106)
|+.+|+.++.....|....+.++..|
T Consensus 74 l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444444444444444443333
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.98 E-value=6.3e+02 Score=29.27 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=33.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001296 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1106)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1106)
...+.+...+.....-+++..-++..+|.+|+..+..--+++.-
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44566777777778888888888888888888888776666543
No 136
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.32 E-value=2.9e+02 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001296 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1106)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1106)
+++..|..+|..++..+..-...+..-...|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333333
No 137
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=40.30 E-value=8e+02 Score=30.29 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=15.0
Q ss_pred HHHhhhhhhhhhHHHHHH
Q 001296 567 QHKRDVDSLNREREEFMN 584 (1106)
Q Consensus 567 ~~krelEsL~~ekEsF~~ 584 (1106)
.+.+++|.|.++.-||++
T Consensus 246 km~kdle~Lq~aEqsl~d 263 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSLED 263 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466789999999999975
No 138
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=39.51 E-value=4.4e+02 Score=27.03 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001296 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (1106)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 508 (1106)
.++.++.|-.+|+.|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466788999999999999999999998877665444
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.24 E-value=7.5e+02 Score=30.55 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.4
Q ss_pred HhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001296 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (1106)
Q Consensus 389 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi 466 (1106)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777777788888888888888887777776433 22244444444444444444444445555555443
No 140
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=38.81 E-value=6.1e+02 Score=28.48 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHhHHHHH
Q 001296 126 CIASLEKAV 134 (1106)
Q Consensus 126 CVadLEKAL 134 (1106)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=38.67 E-value=4e+02 Score=33.64 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001296 585 KMVHEHSEWFTKIQQERADF 604 (1106)
Q Consensus 585 kMehE~s~~~eKiq~Erad~ 604 (1106)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555556666655544
No 142
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=38.61 E-value=8.7e+02 Score=30.20 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001296 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1106)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1106)
+.+-|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777889999988888888777788876 6788888888777765555556677788888888888888888
Q ss_pred hhHHHHHHH
Q 001296 556 SLRQERDAM 564 (1106)
Q Consensus 556 rLK~EK~~~ 564 (1106)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 143
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.23 E-value=5.3e+02 Score=27.35 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=45.2
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHH
Q 001296 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAE 89 (1106)
Q Consensus 27 iWkr~~eaG---~De~S~~rrD~~aLia-~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~ 89 (1106)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++.+.-+|+++...+.
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888765 4666666678887664 57777777777777777777777777777777666554
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.17 E-value=5.6e+02 Score=27.59 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 001296 490 LKEELDVVRAQK 501 (1106)
Q Consensus 490 LKeEId~~R~Qk 501 (1106)
|...+...|.+.
T Consensus 138 l~~~l~~~r~~l 149 (302)
T PF10186_consen 138 LQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 145
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.45 E-value=6.3e+02 Score=32.55 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001296 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAK 172 (1106)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~K 172 (1106)
+..+++-.|...|...+.-+..++.+..+.-.+
T Consensus 136 ~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 136 DDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555554333
No 146
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.22 E-value=8.7e+02 Score=29.55 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=12.4
Q ss_pred HhHHHHHHHhhhhhhhHHH
Q 001296 668 RLDLERMEINMDRQRRDRE 686 (1106)
Q Consensus 668 rLe~ER~Ei~~~ke~le~e 686 (1106)
.|-.||.-+...-+++..+
T Consensus 410 ~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLETQ 428 (511)
T ss_pred HHHhhhhhccccHHHHHHH
Confidence 5666777777766666554
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.10 E-value=8.9e+02 Score=29.62 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001296 462 KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 541 (1106)
Q Consensus 462 q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e 541 (1106)
.+.++......+..++.+-.++..=+.++.++++.++.|-.+|.+ -.- -.-||+.|.+.+..|..-.+-...
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~-------~~l-~~~E~e~L~~e~~~L~n~e~i~~~ 230 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE-------ADL-QPGEDEALEAEQQRLSNLEKLREL 230 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-------CCc-CCCcHHHHHHHHHHHhCHHHHHHH
Confidence 333444444444444444444444445555555555555544422 111 145888888888777664444433
Q ss_pred HHHHHHHhhhhhh---h-hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHH
Q 001296 542 ERVVVSKSLKDER---D-SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 617 (1106)
Q Consensus 542 Ere~lek~~~~E~---e-rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~ 617 (1106)
-...+.-+ .++. . .+ .+.+ ....+.+..+ |-..+ .+=...++-+..+-.++..++......|+.
T Consensus 231 ~~~~~~~L-~~~~~~~~~~~---~~~l-~~~~~~l~~~------~d~~~-~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 231 SQNALAAL-RGDVDVQEGSL---LEGL-GEAQLALASV------IDGSL-RELAEQVGNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHHHHHHH-hCCccccccCH---HHHH-HHHHHHHHHh------hhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33343333 2220 1 11 1111 2334444444 21111 122222223333333333333333333221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001296 618 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (1106)
Q Consensus 618 ~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~L 697 (1106)
+= .+.+ +-+..|..|+.|+.+...-++++...+..++.+...+...-..++.-..++..+-+++
T Consensus 299 dp-~~L~---------------ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l 362 (563)
T TIGR00634 299 DP-ERLN---------------EIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEEL 362 (563)
T ss_pred CH-HHHH---------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1334455666777777777777777777777777777666666665555566666666
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 001296 698 MVQRQLLHADREEIQAES 715 (1106)
Q Consensus 698 K~QRE~~~~ERe~fl~~v 715 (1106)
...-..++.-|......+
T Consensus 363 ~~~a~~Ls~~R~~~a~~l 380 (563)
T TIGR00634 363 DKAAVALSLIRRKAAERL 380 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666667777776655444
No 148
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.05 E-value=6.3e+02 Score=27.88 Aligned_cols=152 Identities=20% Similarity=0.333 Sum_probs=90.8
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----------HHHHHHhcchhHHhhhh
Q 001296 125 ECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----------SLQAEANRYHRSAERKL 194 (1106)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----------ak~AEa~Rk~s~aeRKL 194 (1106)
-||.||+-.=+.++.|++..+-+-+.=-.-...|...+. +.-..+.+.. --+....--...++-.-
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~----~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEIT----DLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEEN 83 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999888665532222222322221 1111111111 11111221222233333
Q ss_pred HHHhhhhhHHHHHHhHhhhhhhHHHHH---HHHHHhchHHHHHHHHHH----HHHHHHHHhhhhhhhHhhHhhHHHHhHh
Q 001296 195 QEVVAREDDLSRRIASFKADCEEKERE---IIRERQSLSDRKKILQQE----HERLLDAQTLLNEREDHILSKLQELSRK 267 (1106)
Q Consensus 195 ~eVEaRE~~LrRerlSf~~E~ea~E~~---~~~qRe~L~eweKkLqe~----eeRL~e~q~~LNqREe~~~e~~~~l~~k 267 (1106)
.-+-++-..|.++--++.++.+.+..+ +.-++.-|...-+-|..+ +--++....++++|+.-++++.+-...+
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL 163 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEEL 163 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344455666777777777777776654 444555555555555332 5566778888999999999999999888
Q ss_pred HHHHHHHhhcHHH
Q 001296 268 EKELEASRANVEE 280 (1106)
Q Consensus 268 EkeLEe~kkkie~ 280 (1106)
..-+++....++.
T Consensus 164 ~~~ieEy~~~tee 176 (193)
T PF14662_consen 164 KKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776543
No 149
>PRK10698 phage shock protein PspA; Provisional
Probab=35.89 E-value=6.2e+02 Score=27.72 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=42.7
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHH
Q 001296 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASA 88 (1106)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~ 88 (1106)
.||+||..+. ++..--+--|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...+
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999876 566666777999 77778888888887765555555555555555555544433
No 150
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=35.81 E-value=1.3e+02 Score=30.21 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001296 127 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1106)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tse--sKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL 194 (1106)
|+-|++||.++++.|......++ .|+.+.+.=|...+.-+.++-.+=.. .+.+.-.+|..++..+|
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 67799999999999987664443 34444444444444433333333222 33333334444444444
No 151
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.34 E-value=5.7e+02 Score=27.10 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=38.7
Q ss_pred hhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhh-------hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001296 382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHL-------LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454 (1106)
Q Consensus 382 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~-------LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK 454 (1106)
+...|+..-...++|..+...|.+-.+-|..+++. |.+.+-.|+..-+.+ -..+++-+..++.-+++
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555544444 444444444444443 34566777788888887
Q ss_pred hhhh
Q 001296 455 SLSS 458 (1106)
Q Consensus 455 ~~a~ 458 (1106)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 152
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.08 E-value=8.3e+02 Score=31.51 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=53.8
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001296 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (1106)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EI 335 (1106)
++++..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++...+..++...++|....++|..+....+
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666655544444444444444444444444445555555555666666666666666666666
Q ss_pred HHHHHHhHHHHhhhhhHHH
Q 001296 336 QKIIANHESALRVKQSEFE 354 (1106)
Q Consensus 336 QKLldeh~a~L~~Kk~EFE 354 (1106)
+++-.+.+.++..-+.+.+
T Consensus 564 ~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 564 LELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555554444333
No 153
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.57 E-value=5.6e+02 Score=32.96 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001296 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (1106)
Q Consensus 141 ~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~a 175 (1106)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999888877776655543
No 154
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.45 E-value=2.5e+02 Score=30.29 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Q 001296 661 QVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLE 722 (1106)
Q Consensus 661 ev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~LK~QRE~~~~ERe~fl~~vEklK~ck 722 (1106)
...-++..++.+-.+......+++..+.+|..-+-+|+.+...+....+....-|..+++|-
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556677888889999999999999999999999999999999988763
No 155
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=34.37 E-value=6.5e+02 Score=27.50 Aligned_cols=114 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHH
Q 001296 581 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKM--REFQQISSLKEKAEKE 658 (1106)
Q Consensus 581 sF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~--~EL~~IN~lkE~a~kE 658 (1106)
+|+.+=-+++..-..++...-.+-...++-.+.+|......+..+++..|-++++.+-.-+. ..|..|..+|+...+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------HhhhhhhhHHHHHHHHHHH
Q 001296 659 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELNNSI 694 (1106)
Q Consensus 659 ~Eev~lE~~rLe~ER~E--------i~~~ke~le~e~~EL~~ls 694 (1106)
|..+.-++.++..+-.+ .-..|.+|+.+..++.-..
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~ 130 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQ 130 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.31 E-value=3.1e+02 Score=30.59 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=41.5
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001296 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (1106)
Q Consensus 504 LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kr 570 (1106)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++..
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhc
Confidence 3444555555555566666777777778888777776 7999999999999998864
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.68 E-value=2.7e+02 Score=26.84 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001296 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1106)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE 519 (1106)
+|..+.+-+..++=|=.|+----..|.+|++..|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444456666777777777777777777777766553
No 158
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.41 E-value=6.9e+02 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001296 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1106)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 608 (1106)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3444455666777777654
No 159
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.41 E-value=8.5e+02 Score=28.26 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=42.6
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHH
Q 001296 190 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 269 (1106)
Q Consensus 190 aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEk 269 (1106)
++-.|.+++.|-.+|.-+---+.+|.++...-+..||-..-- ..-+.+.-|.....+-.|--++| +.|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~---q~s~Leddlsqt~aikeql~kyi----ReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQ---QESQLEDDLSQTHAIKEQLRKYI----RELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcc
Confidence 444566666666666666666667777776666666632221 12222333444333333333333 45555666
Q ss_pred HHHHHhhc
Q 001296 270 ELEASRAN 277 (1106)
Q Consensus 270 eLEe~kkk 277 (1106)
+||-++..
T Consensus 123 dLErakRa 130 (333)
T KOG1853|consen 123 DLERAKRA 130 (333)
T ss_pred HHHHhhhh
Confidence 66666653
No 160
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=30.76 E-value=1.1e+03 Score=28.94 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=66.7
Q ss_pred hhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHH---HHHHHHHhchHHHHHHHHHHHH
Q 001296 165 KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE---REIIRERQSLSDRKKILQQEHE 241 (1106)
Q Consensus 165 KslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E---~~~~~qRe~L~eweKkLqe~ee 241 (1106)
.+.++-.-+..|.-.+|-.+--+..+.-.|..|-+.-..|--+.-|+-++..++. .++..++.+|.-+.++..+...
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~ 203 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ 203 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444444444444444 4455555555555554444433
Q ss_pred HHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHH
Q 001296 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL 321 (1106)
Q Consensus 242 RL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl 321 (1106)
.|..-+.-.-+|++.+..+...+.+. -.+.......|..+--.++.|++.+-+++..|.--|..+.
T Consensus 204 ~la~r~~a~q~r~~ela~r~aa~Qq~--------------~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~ 269 (499)
T COG4372 204 NLATRANAAQARTEELARRAAAAQQT--------------AQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQA 269 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333323333333333322222222 2222333445555556666666666666666666555555
Q ss_pred HHHHH
Q 001296 322 VSQET 326 (1106)
Q Consensus 322 ~leEK 326 (1106)
-||.-
T Consensus 270 ~leqe 274 (499)
T COG4372 270 RLEQE 274 (499)
T ss_pred HHHHH
Confidence 55433
No 161
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.67 E-value=7.9e+02 Score=27.33 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001296 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1106)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1106)
|+-++++|+.++.+++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777776666655555554444554444333 223333222 344
Q ss_pred HhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q 001296 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1106)
Q Consensus 210 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~ 248 (1106)
++..-+.+++.++..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777766553
No 162
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=30.59 E-value=4.4e+02 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=23.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH
Q 001296 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 629 (1106)
Q Consensus 580 EsF~~kMehE~s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~ 629 (1106)
+.+.+.+..+=..+...+...+..|+..|+-........|......++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555555554444444444444444443
No 163
>PRK11519 tyrosine kinase; Provisional
Probab=29.87 E-value=1.2e+03 Score=29.47 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=28.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001296 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1106)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1106)
...+.|...|...++-+++...++..+|..|+..++.--+.+..
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666666677777777777777777777766665555443
No 164
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.51 E-value=4.9e+02 Score=30.66 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001296 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 450 (1106)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~ 450 (1106)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888887777532 23445677777777777766655444
No 165
>PRK11281 hypothetical protein; Provisional
Probab=29.49 E-value=1.6e+03 Score=30.55 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHH
Q 001296 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 271 (1106)
Q Consensus 218 ~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeL 271 (1106)
.|..+..-...|.+|+..|.+....|...+...-..-..+.++.+.+.+....|
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666667777777777766666666555555555566666666555555
No 166
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=28.96 E-value=1.5e+03 Score=30.19 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001296 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1106)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1106)
|-.+.+--..-++-++-.|.+|..+.++.++.++.-+.+.. ++-.-.+-|.+...-.-.|.+...+++++-.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--------qLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE--------QLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhHHHHHHhHhhhh-------hhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhH
Q 001296 196 EVVAREDDLSRRIASFKAD-------CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 268 (1106)
Q Consensus 196 eVEaRE~~LrRerlSf~~E-------~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kE 268 (1106)
-.+.|=..|..-.--|..+ ..-.-+++.-++++.-+.++...+....|.+.++-...=+-...+....+...+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhH--HHHHHHHh----------hhhhHHHH
Q 001296 269 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLA----------SKESNEIQ 336 (1106)
Q Consensus 269 keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkEL--l~leEKL~----------aRE~~EIQ 336 (1106)
++|..+...++.--.++..-...-+..++.|...++.-|..-..+-.+|.|. +.++..-+ +-|-...|
T Consensus 501 ~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ 580 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQ 580 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHH
Q ss_pred HHHHHhHHHHhhhhhHHHHHHHH
Q 001296 337 KIIANHESALRVKQSEFEAELAI 359 (1106)
Q Consensus 337 KLldeh~a~L~~Kk~EFElElE~ 359 (1106)
-..+....+|+.-.-.-+-.|..
T Consensus 581 ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 581 LQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
No 167
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.82 E-value=76 Score=34.54 Aligned_cols=55 Identities=27% Similarity=0.455 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccCCCCCcccc---cCC------CCCCCCC------------------------CccccccccCCccccc
Q 001296 801 WIKRFADLVFKHSGENSVEND---EEK------SPTSDHE------------------------DASLTINSRKRQPVRY 847 (1106)
Q Consensus 801 WlrKCtskIFk~SP~Kk~~~~---~~~------~p~S~~~------------------------d~sl~~n~~K~q~iry 847 (1106)
||++.+.+|=+++=-++...| ++- .|--|+| -++-++-..++||.||
T Consensus 69 wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~ 148 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRY 148 (224)
T ss_pred HHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCCCCccc
Confidence 999999999776654544555 222 2322222 1223344779999999
Q ss_pred ccC---CCeee
Q 001296 848 SFG---EPKVI 855 (1106)
Q Consensus 848 a~g---epkvi 855 (1106)
.|. +|++.
T Consensus 149 ~fsllleprsl 159 (224)
T KOG3200|consen 149 LFSLLLEPRSL 159 (224)
T ss_pred eeeeeeccceE
Confidence 998 55544
No 168
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.79 E-value=1.3e+02 Score=29.52 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.4
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001296 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1106)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1106)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+...-..++.|...++..+.++......
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566778888887777763 345579999999988877777777776666666555544333
No 169
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=28.77 E-value=1.2e+03 Score=28.69 Aligned_cols=138 Identities=17% Similarity=0.290 Sum_probs=83.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001296 132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 205 (1106)
Q Consensus 132 KAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----ak~AEa~Rk~s~aeRKL~eVEaRE~~Lr-- 205 (1106)
..|+.||.+.|-++.++.+-.++-...|.++-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888778878888887777665432 1111 1112122222222222222222222222
Q ss_pred -----------------HHHhHhhhhhhHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHH
Q 001296 206 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILSKLQEL 264 (1106)
Q Consensus 206 -----------------RerlSf~~E~ea~E~~~~~qRe~L~----eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l 264 (1106)
++.-+...|..+..+++.+..+.+. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D----- 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD----- 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 2344555667777777777666665 48887777788999999999998887654
Q ss_pred hHhHHHHHHHhhcH
Q 001296 265 SRKEKELEASRANV 278 (1106)
Q Consensus 265 ~~kEkeLEe~kkki 278 (1106)
++.+|+.+..++
T Consensus 308 --L~dDL~ka~eTf 319 (426)
T smart00806 308 --LKEDLEKAEETF 319 (426)
T ss_pred --HHHHHHHHHHHH
Confidence 445555444444
No 170
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=28.21 E-value=8.6e+02 Score=26.98 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 001296 490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 569 (1106)
Q Consensus 490 LKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~k 569 (1106)
+...++++..++.-..+.++ .=|.+|+..+-..+.-+..++. +....-.+ .++++. .=-++.+..-...++.|+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~-~~~~~~~k-e~~K~~-~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNR-NANLVNVK-QQEKLF-AKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHH-HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566777666666666544 4566788777654443322221 11010000 111111 224456667778899999
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001296 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1106)
Q Consensus 570 relEsL~~ekEsF~~kMehE~s~~~eKiq~Erad~l~d~ 608 (1106)
.-++.|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 179 ~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 179 QNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55555667788888888764
No 171
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.99 E-value=5.7e+02 Score=24.83 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001296 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 543 (1106)
Q Consensus 483 ~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEr 543 (1106)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|..|..+...+..++
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456888888888876 567778888887666655555555555555554444444443
No 172
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.94 E-value=1.6e+03 Score=30.00 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhH---HHHHHHHHHHHHhhhhhhhhhHHH
Q 001296 312 SLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---EDEIEKKRRAWELRDLDLGQREES 388 (1106)
Q Consensus 312 ~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~---eeEle~K~~~~E~rEvel~h~Eek 388 (1106)
-|.-.+..|.+||-++.-+|. +.|+| ++-.+.+..-+.+-|.|||+-+--+ +++|-.|+.++--.=-+|+..=..
T Consensus 100 dlk~~~sQiriLQn~c~~lE~-ekq~l-Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~ 177 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEM-EKQKL-QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEE 177 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 334445555566666555553 33333 2233444455556666666655433 345556666655555555555555
Q ss_pred HhhhhhhHHHHHHHHHHhhhhHHHHhhhhHH
Q 001296 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEE 419 (1106)
Q Consensus 389 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKE 419 (1106)
|..-+-.+..++....+..+.+..|++.++|
T Consensus 178 lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 178 LNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666777777777777777766654
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.41 E-value=6.3e+02 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001296 490 LKEELDVVRAQKLELMVETDKL 511 (1106)
Q Consensus 490 LKeEId~~R~Qke~LlkEad~L 511 (1106)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 174
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.35 E-value=1.7e+03 Score=30.18 Aligned_cols=223 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHhhcHHHH-----HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHH---------
Q 001296 271 LEASRANVEEK-----FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQ--------- 336 (1106)
Q Consensus 271 LEe~kkkie~~-----~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQ--------- 336 (1106)
|.++.+-|+.. +-.|.+...+...-..+++.....+..++...++-+++.-.+-+...-+...+.-
T Consensus 164 L~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y 243 (1072)
T KOG0979|consen 164 LVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEY 243 (1072)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q ss_pred -HHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhh
Q 001296 337 -KIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415 (1106)
Q Consensus 337 -KLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk 415 (1106)
+.-.++++...++.+ +-.+++....+.---+.-...+|....+-.-....+..-+.+----+..++.
T Consensus 244 ~~~~~ey~~~k~~~~r------------~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e 311 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDR------------AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE 311 (1072)
T ss_pred HhhhHHHHHHHHHHHH------------HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001296 416 LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELD 495 (1106)
Q Consensus 416 ~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId 495 (1106)
.|++.++.+...-..++.-++.-..--..|.+++-+|.-..+.+..-.-=-+---+--+++.+.+..+..--...-++||
T Consensus 312 k~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id 391 (1072)
T KOG0979|consen 312 KLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEID 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhh
Q ss_pred HHHHHHHHhH
Q 001296 496 VVRAQKLELM 505 (1106)
Q Consensus 496 ~~R~Qke~Ll 505 (1106)
.-+.-...++
T Consensus 392 ~~~~~~~~~~ 401 (1072)
T KOG0979|consen 392 AEQLKSQKLR 401 (1072)
T ss_pred HHHHHHHHHH
No 175
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.13 E-value=8.2e+02 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=20.9
Q ss_pred HhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 001296 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1106)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1106)
+.++..-...++.++..++..+...+..|.+.+..|.+.+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554443
No 176
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.09 E-value=5.1e+02 Score=29.65 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=64.2
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHH
Q 001296 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIKL 490 (1106)
Q Consensus 415 k~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~lrLQseL 490 (1106)
-.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+.++..+...+.+|..+++=| +||-.|+.+|
T Consensus 158 ~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred cCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34455566666555555 4445555566777777777777778888888888888999888877 7899999999
Q ss_pred HHHHHHHHHHH---HHhHHhhHHH
Q 001296 491 KEELDVVRAQK---LELMVETDKL 511 (1106)
Q Consensus 491 KeEId~~R~Qk---e~LlkEad~L 511 (1106)
++--+.|=..- ..|..+.|+.
T Consensus 235 ~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 235 QKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99877664432 3444444443
No 177
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.97 E-value=1.9e+03 Score=30.56 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHH
Q 001296 239 EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQ 318 (1106)
Q Consensus 239 ~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEk 318 (1106)
.++.|.++|...--=|..++...+.+..+++-+++++.++-.--.. -..-|+.+.+.+.....-|+
T Consensus 1596 a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~--------------A~~a~~~a~sa~~~A~~a~q 1661 (1758)
T KOG0994|consen 1596 AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE--------------AKQAEKTAGSAKEQALSAEQ 1661 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555666666666666666655543221111 11123444555555555555
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHH
Q 001296 319 KLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 398 (1106)
Q Consensus 319 ELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~ 398 (1106)
.|..|+..+..-.+-.-.+....+.|.-++++.- +.-+|++ .+-.-+=.+|+.+|-.....+++|+.
T Consensus 1662 ~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~-----~eA~~Ll--------~~a~~kl~~l~dLe~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1662 GLEILQKYYELVDRLLEKRMEGSQAARERAEQLR-----TEAEKLL--------GQANEKLDRLKDLELEYLRNEQALED 1728 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-----HHHHHHH--------HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666665554444322222222222211111110 0011221 11122224567777778888899999
Q ss_pred HHHHHHHhhhhHHHHhhhhHHH
Q 001296 399 QSRALVDKEKDLVERSHLLEEK 420 (1106)
Q Consensus 399 k~~~lkEKEkdl~~Ksk~LKEk 420 (1106)
+...|.-.|+.+..-+..++++
T Consensus 1729 ~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1729 KAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHhhh
Confidence 9999999999888888887765
No 178
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.77 E-value=1.4e+03 Score=29.02 Aligned_cols=37 Identities=35% Similarity=0.340 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhh
Q 001296 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEM 524 (1106)
Q Consensus 488 seLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~ 524 (1106)
-+|+++++++-.+...|++++=+++-+-+.|=++-+.
T Consensus 342 ~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4688999999999999999999999888888665543
No 179
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.86 E-value=8.2e+02 Score=27.89 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=17.5
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001296 258 LSKLQELSRKEKELEASRANVEEKFKALNE 287 (1106)
Q Consensus 258 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1106)
+.....+..++++++-++...+.....+++
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666655555443
No 180
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.53 E-value=1.7e+03 Score=29.18 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=97.6
Q ss_pred hhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhh--------------hhhHHHHHHhHHHHH
Q 001296 69 LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT--------------LGVEKECIASLEKAV 134 (1106)
Q Consensus 69 LLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKA--------------LgvEKqCVadLEKAL 134 (1106)
-|+-.+..|.-+++++..+++-. +-+ -..|..+.-.-..++.. ......|...|+.=|
T Consensus 527 DLLsgkadLE~fieE~s~tLdwI---ls~-----~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eel 598 (769)
T PF05911_consen 527 DLLSGKADLERFIEEFSLTLDWI---LSN-----CFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEEL 598 (769)
T ss_pred HHhcchhHHHHHHHHHHHHHHHH---HHc-----cchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHH
Confidence 35667777888888888877744 222 22222211111111111 123444444555555
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhh-------hHHHhhhhhHHHHH
Q 001296 135 HEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK-------LQEVVAREDDLSRR 207 (1106)
Q Consensus 135 ~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRK-------L~eVEaRE~~LrRe 207 (1106)
..|..+- -.-+..|+.+..-+....-++.++|.+|....+.++-++-..+.++.- +..++.|=..+.-+
T Consensus 599 E~le~eK----~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEK----EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5555443 334556677777777777777777777777777777666666666653 34446665566666
Q ss_pred HhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 001296 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLD 245 (1106)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e 245 (1106)
......-..+++.+|.+.|..-.|-.-+++..++.|.-
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 66666667777777777777766666666666655543
No 181
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=1.1e+03 Score=26.94 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=35.0
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001296 258 LSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1106)
Q Consensus 258 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1106)
++..+.|.+...+++.+...+..+...+.+--.=+..+-+....-|.++-..++.|+.-+..+..+.+++.
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555444433333222222222233333455666666666666666666666554
No 182
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.19 E-value=7.8e+02 Score=30.75 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001296 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1106)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1106)
...|.++||+.++ .+|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888885533 3444444444444333333333444445555556665555566667778888889999999999
Q ss_pred HHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHH
Q 001296 273 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (1106)
Q Consensus 273 e~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~ 310 (1106)
..+..-+.-+..+-+-=..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999988888877666665543 3344455443
No 183
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.15 E-value=8.1e+02 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=11.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 001296 477 KSEAGELSVLEIKLKEELDVVRAQKLELM 505 (1106)
Q Consensus 477 eeER~E~lrLQseLKeEId~~R~Qke~Ll 505 (1106)
..+..++......+..++...+.....+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333344444444333333333
No 184
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.45 E-value=27 Score=43.31 Aligned_cols=51 Identities=33% Similarity=0.528 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch
Q 001296 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 187 (1106)
Q Consensus 129 dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~ 187 (1106)
.+++-+.+||.++.+.-..| .+|.+|=+.+ ..+-.+-.-|+-+.+++.+|.
T Consensus 271 ~le~ei~~L~q~~~eL~~~A----~~a~~LrDEl----D~lR~~a~r~~klE~~ve~YK 321 (713)
T PF05622_consen 271 ELEKEIDELRQENEELQAEA----REARALRDEL----DELREKADRADKLENEVEKYK 321 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666533222 2344443322 223333333445566666663
No 185
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.40 E-value=1.6e+03 Score=28.49 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=14.2
Q ss_pred hhhhhhHhHHHHhhhHHHHHHHHHHHHHhH
Q 001296 288 EKSNLDLTLVSLLKREEAVIEREASLQKKE 317 (1106)
Q Consensus 288 ke~dl~~rl~~l~~rEee~~~~~~~Le~KE 317 (1106)
+...+..++..+...|.++..++-..+..+
T Consensus 354 ~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 354 ERKRLNKRVSAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444444444444
No 186
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.36 E-value=1.1e+03 Score=26.45 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=63.2
Q ss_pred HHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 001296 308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREE 387 (1106)
Q Consensus 308 ~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Ee 387 (1106)
.+--.|-++|.+|-..+++..+-|+.-. .|..+ + +-+...+++ |...++
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~-eLeEe---------------~----~~~~~nlk~-----------l~~~ee 133 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSE-ELEED---------------L----RILDSNLKS-----------LSAKEE 133 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH---------------H----HHhHhHHHH-----------HHHHHH
Confidence 4456788889999888888887775321 11111 1 111222222 233445
Q ss_pred HHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001296 388 SLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1106)
Q Consensus 388 kl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e 460 (1106)
++..++-..+.+++.+.+|=+.-+.+-... |++....+|.+..=-..|...++....++.+|-.+..+++
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555444444444433 2555555555544455555566666666666666655543
No 187
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.43 E-value=1.3e+03 Score=27.26 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhHHHHhhhhhHHHHH---HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhh
Q 001296 332 SNEIQKIIANHESALRVKQSEFEAE---LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEK 408 (1106)
Q Consensus 332 ~~EIQKLldeh~a~L~~Kk~EFElE---lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEk 408 (1106)
+-|+.+++---+..|.+--.+.-+- |.+.++.++.-..+--.-+.+-=.+|..-=+|++-||.-|+-++.-|-.+=+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776666665554 5556777766666666667777888888889999999999999999999999
Q ss_pred hHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhhhhhhhhhhh-----
Q 001296 409 DLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE--KKKQVNCAKDKLEAMKSEAG----- 481 (1106)
Q Consensus 409 dl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~--q~~qi~ee~E~LkiteeER~----- 481 (1106)
.+..-+..++++-+.+.- -.+.....|..=-.++..+|.++|.-.+...+ =..+|.++.-+|+ +|+.
T Consensus 284 ~a~~~lse~~e~y~q~~~---gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ 357 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASV---GVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQ 357 (384)
T ss_pred HHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhh
Confidence 999999999988766542 33344445555556666777776665555443 2456666655553 4443
Q ss_pred ----hHHHHHHHHHH
Q 001296 482 ----ELSVLEIKLKE 492 (1106)
Q Consensus 482 ----E~lrLQseLKe 492 (1106)
+|..||+.|+.
T Consensus 358 igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 358 IGVFEHSILQTYLRD 372 (384)
T ss_pred eehhhHHHHHHHHHH
Confidence 67788888876
No 188
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.42 E-value=6.2e+02 Score=27.72 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001296 241 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1106)
Q Consensus 241 eRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1106)
++..+.+..++++...+++-.....++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666777777777777777777777766655555555544
No 189
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.83 E-value=1.2e+03 Score=27.61 Aligned_cols=135 Identities=14% Similarity=0.237 Sum_probs=77.4
Q ss_pred HHHHHHHHHhHHHHhhhhhHHHHH---HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhh
Q 001296 333 NEIQKIIANHESALRVKQSEFEAE---LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 409 (1106)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~EFElE---lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 409 (1106)
.|+.+++-.-++...+.-.+-=.= |.+-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444443344333333333333 33445667777777777788888888888899999999999998888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001296 410 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 470 (1106)
Q Consensus 410 l~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q--~~qi~ee~ 470 (1106)
...+++.++++=+. .-..+......|-.=.++|...|.+++.=.+++++. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y~~---~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKYKQ---ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55555555544333 333343334444444455555555555444444332 23444443
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.77 E-value=1.9e+03 Score=28.86 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHH--HHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001296 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV--QSRALVDKEKDLVERSHLLEEKENKL 424 (1106)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~--k~~~lkEKEkdl~~Ksk~LKEkEksL 424 (1106)
++++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+-|-.|..+.+++---+...
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~ 158 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHS 158 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 44555566555555444444433333333333322 26677777888888877765444433
No 191
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.17 E-value=1.4e+03 Score=26.93 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH--HHHhhhhhhhhHhHHHHhhhHHHHH
Q 001296 230 SDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF--KALNEEKSNLDLTLVSLLKREEAVI 307 (1106)
Q Consensus 230 ~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~--~~Lk~ke~dl~~rl~~l~~rEee~~ 307 (1106)
+..++.-.+.-++..+.+ ..|++.+.++.+.-...++++|+...----.- ..|+-.-..+..|-.--..+|++
T Consensus 326 rqlerqekqeleqmaeee---kkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeee-- 400 (445)
T KOG2891|consen 326 RQLERQEKQELEQMAEEE---KKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEE-- 400 (445)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH--
Q ss_pred HHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhH
Q 001296 308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSE 352 (1106)
Q Consensus 308 ~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~E 352 (1106)
.|..-++.+-.||+++-.-|..-.+-|+.-|.+-|.....+
T Consensus 401 ----klk~e~qkikeleek~~eeedal~~all~~qeirl~~~lke 441 (445)
T KOG2891|consen 401 ----KLKAEEQKIKELEEKIKEEEDALLLALLNLQEIRLIAELKE 441 (445)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 192
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.11 E-value=1.8e+03 Score=28.29 Aligned_cols=191 Identities=27% Similarity=0.364 Sum_probs=95.7
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 001296 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK---DERDSLRQERDAMRDQHKRDVDSLNRE 578 (1106)
Q Consensus 502 e~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~---~E~erLK~EK~~~r~~~krelEsL~~e 578 (1106)
..|+.|-.+|+++-+-.|.+++.+ |.+|.+=.+-.+.-+-.-.+.-. .=++.|=+|-.+-..||-+..=.|.-+
T Consensus 39 L~lLeeK~~Lkqq~eEleaeyd~~---R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~elene 115 (772)
T KOG0999|consen 39 LELLEEKEDLKQQLEELEAEYDLA---RTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENE 115 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345556666666666666665443 33333222222221111111111 123456666666666665544333222
Q ss_pred HHHHHH---hhhhhhhhHHHHHHHHHHHhhh---hhHhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhH
Q 001296 579 REEFMN---KMVHEHSEWFTKIQQERADFLL---GIEMQKRDLENCIEKRREELESSFRERE-KAFEEEKMREFQQISSL 651 (1106)
Q Consensus 579 kEsF~~---kMehE~s~~~eKiq~Erad~l~---d~EmqkreLE~~iqkRqEEiE~~L~ERE-k~FEeek~~EL~~IN~l 651 (1106)
=.-..+ ....| -+++.+.++|+.. ++|.||+-|-.+|. .+..|| +...+=-+-|-+||.-.
T Consensus 116 LKq~r~el~~~q~E----~erl~~~~sd~~e~~~~~E~qR~rlr~elK--------e~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 116 LKQLRQELTNVQEE----NERLEKVHSDLKESNAAVEDQRRRLRDELK--------EYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhcchhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcchHH
Confidence 111111 11112 2345555566654 57888887766663 344444 34455567788999999
Q ss_pred HHHHHHHHHHHHH-----HHHHhHHHHHHHhhhhhhhH-----HHHHH--HHHHHHHHHHHHHHHHHhhHH
Q 001296 652 KEKAEKELEQVTL-----EIKRLDLERMEINMDRQRRD-----REWAE--LNNSIEELMVQRQLLHADREE 710 (1106)
Q Consensus 652 kE~a~kE~Eev~l-----E~~rLe~ER~Ei~~~ke~le-----~e~~E--L~~lse~LK~QRE~~~~ERe~ 710 (1106)
|.|.+=---+|.+ |.+||+-|-.-+ ..+++ +.+++ |-.-.+-|+.-|++-.+-|.+
T Consensus 184 KqVs~LR~sQVEyEglkheikRleEe~ell---n~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 184 KQVSNLRQSQVEYEGLKHEIKRLEEETELL---NSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE 251 (772)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9998765555555 455555443322 23333 23333 444455577777765555544
No 193
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.07 E-value=9.3e+02 Score=28.49 Aligned_cols=99 Identities=14% Similarity=0.339 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHHHHHHhchHH
Q 001296 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 231 (1106)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~e 231 (1106)
|..++.+..+|..-+.++-..|- |-+.++.+-|..+.+||.-|-.+.-...
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~----------kl~~~i~~~lekI~sREk~iN~qle~l~------------------- 272 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLD----------KLQQDISKTLEKIESREKYINNQLEPLI------------------- 272 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------------
Confidence 66777777777777766665543 3566777777777777766544332222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHH
Q 001296 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 281 (1106)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~ 281 (1106)
..+...+.+|.+.+.-.++....+.++.+.|...-.+||..+..++.-
T Consensus 273 --~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 273 --QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224455666677777777777778888888888888888777766544
No 194
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.04 E-value=1.2e+03 Score=26.02 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~E 521 (1106)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35555665554 3455555555666677765
No 195
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.04 E-value=1.8e+03 Score=29.13 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001296 512 QLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 591 (1106)
Q Consensus 512 k~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s 591 (1106)
+.|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+.
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445566777788888888888888877777777654444443 3456666677788888888888885443
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhH
Q 001296 592 EWFTKIQQERADFLLGIEMQKRDLE 616 (1106)
Q Consensus 592 ~~~eKiq~Erad~l~d~EmqkreLE 616 (1106)
.=...|...++++|.++-|+-|
T Consensus 516 ---kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 516 ---KLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred ---hHHHHHhhhhHhhhHHHHHHHH
Confidence 3334566777777777666544
No 196
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.83 E-value=5.4e+02 Score=26.94 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001296 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1106)
Q Consensus 488 seLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EW 522 (1106)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888899999988888875
No 197
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.78 E-value=3.3e+02 Score=25.26 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001296 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1106)
Q Consensus 124 KqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1106)
+.++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999999888887776555444
No 198
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.69 E-value=6.2e+02 Score=31.52 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHH--HHhhhhHHHHhhhhHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001296 381 DLGQREESLLEREHDLEVQSRAL--VDKEKDLVERSHLLEEKEN------KLIAFEKEADLKKSLLQKEKEEVNIIKSDL 452 (1106)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~l--kEKEkdl~~Ksk~LKEkEk------sLkaeEK~le~ek~~L~~dKEel~~lK~dl 452 (1106)
...+.+..+.+.++..+.....| ++.=+.+..+++.|+. + .+....+++..=+..+.++++.+..++.++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~--~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK--KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHhh
Q 001296 453 QKSLSSLDEKKKQVNCAKDK 472 (1106)
Q Consensus 453 EK~~a~~e~q~~qi~ee~E~ 472 (1106)
+..+..+..+...+..+-++
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHhHHHHHHHHHHHHhccHh
No 199
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.57 E-value=2e+03 Score=28.46 Aligned_cols=61 Identities=26% Similarity=0.474 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001296 506 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1106)
Q Consensus 506 kEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1106)
.|-|-||-+..+++.|-+.|--.-+ .+..-|+--++.+-.=-+.|+.|.+ -+..++++|..
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qle-------e~~rLk~iae~qleEALesl~~ERe-qk~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLE-------EAARLKEIAEKQLEEALESLKSERE-QKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4455555555555555555443333 3333333334444444455666554 24556666666
No 200
>PF14992 TMCO5: TMCO5 family
Probab=20.04 E-value=9.7e+02 Score=27.83 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhh
Q 001296 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1106)
Q Consensus 353 FElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1106)
+|-|+....-.+++. +..-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 344454444444443 2222223666777766665544444433333444466666666555553
Done!