Query 001296
Match_columns 1106
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 20:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.8 5.2E-05 1.8E-09 93.6 10.0 33 556-589 1148-1180(1184)
2 1i84_S Smooth muscle myosin he 97.7 8.4E-05 2.9E-09 91.7 10.8 37 489-525 1064-1100(1184)
3 3na7_A HP0958; flagellar bioge 95.6 2.1 7.2E-05 44.7 22.5 59 481-540 8-66 (256)
4 3na7_A HP0958; flagellar bioge 94.8 2.7 9.3E-05 43.9 20.6 90 492-599 97-186 (256)
5 3vkg_A Dynein heavy chain, cyt 94.3 6.3 0.00022 54.4 27.0 30 208-238 1665-1694(3245)
6 2dfs_A Myosin-5A; myosin-V, in 93.3 1.4 5E-05 54.8 17.3 48 553-603 1031-1078(1080)
7 3vkg_A Dynein heavy chain, cyt 92.2 17 0.00059 50.4 26.1 23 549-571 2081-2103(3245)
8 2dfs_A Myosin-5A; myosin-V, in 91.2 7.1 0.00024 48.8 19.6 25 489-513 1020-1044(1080)
9 3oja_B Anopheles plasmodium-re 88.5 8.5 0.00029 43.4 15.9 70 443-515 463-532 (597)
10 3oja_B Anopheles plasmodium-re 87.9 3.3 0.00011 46.7 12.2 18 489-506 562-579 (597)
11 2efr_A General control protein 84.3 37 0.0013 34.2 19.0 135 128-301 3-137 (155)
12 3oja_A Leucine-rich immune mol 77.8 41 0.0014 37.3 15.5 61 484-544 420-480 (487)
13 2ocy_A RAB guanine nucleotide 75.2 67 0.0023 32.4 14.6 130 50-211 12-141 (154)
14 2eqb_B RAB guanine nucleotide 69.5 59 0.002 30.7 11.9 92 77-182 3-94 (97)
15 2v71_A Nuclear distribution pr 65.1 1.3E+02 0.0046 31.1 16.5 70 435-515 104-177 (189)
16 2fxo_A Myosin heavy chain, car 63.0 1.1E+02 0.0037 29.3 15.6 39 489-527 80-118 (129)
17 2v71_A Nuclear distribution pr 61.8 1.5E+02 0.0053 30.7 16.4 34 189-222 46-79 (189)
18 3mq9_A Bone marrow stromal ant 61.4 50 0.0017 36.4 11.6 96 129-225 370-469 (471)
19 2b9c_A Striated-muscle alpha t 60.5 92 0.0031 30.9 12.0 41 162-202 8-48 (147)
20 3q8t_A Beclin-1; autophagy, AT 54.8 84 0.0029 29.1 10.0 62 653-714 7-68 (96)
21 3hnw_A Uncharacterized protein 53.9 72 0.0025 31.3 10.0 59 489-547 72-130 (138)
22 2e7s_A RAB guanine nucleotide 50.8 28 0.00096 34.5 6.5 75 116-207 51-125 (135)
23 3ghg_A Fibrinogen alpha chain; 44.1 2E+02 0.0067 34.2 12.9 135 334-492 50-187 (562)
24 3tnu_B Keratin, type II cytosk 40.9 2.3E+02 0.0079 26.9 11.0 116 232-367 13-129 (129)
25 3oja_A Leucine-rich immune mol 37.3 3.2E+02 0.011 30.2 13.1 44 381-424 439-482 (487)
26 1x8y_A Lamin A/C; structural p 33.5 2.7E+02 0.0092 25.1 9.7 80 279-367 2-82 (86)
27 3teq_A Stromal interaction mol 32.0 43 0.0015 31.9 4.3 44 144-187 22-80 (101)
28 3i00_A HIP-I, huntingtin-inter 30.8 2.2E+02 0.0075 27.5 9.1 64 444-517 16-79 (120)
29 4erc_A Dual specificity protei 28.9 29 0.00099 31.7 2.6 35 1-36 1-36 (150)
30 3q8t_A Beclin-1; autophagy, AT 28.8 3.5E+02 0.012 25.0 12.4 38 503-540 15-52 (96)
31 3u1c_A Tropomyosin alpha-1 cha 26.7 2.2E+02 0.0074 26.4 8.0 71 138-208 24-95 (101)
32 3tnu_A Keratin, type I cytoske 24.8 4.6E+02 0.016 25.0 10.5 117 232-367 15-131 (131)
33 1m1j_B Fibrinogen beta chain; 24.8 5.4E+02 0.019 29.9 12.4 23 250-272 130-152 (464)
34 3hnw_A Uncharacterized protein 23.2 3.8E+02 0.013 26.2 9.4 11 408-418 35-45 (138)
35 2jee_A YIIU; FTSZ, septum, coi 23.1 4.2E+02 0.014 24.4 8.9 55 465-519 14-68 (81)
36 1f5n_A Interferon-induced guan 22.9 8.3E+02 0.028 28.8 13.8 121 398-521 456-582 (592)
37 3nmd_A CGMP dependent protein 21.9 1.9E+02 0.0065 26.2 6.3 47 283-329 19-65 (72)
38 3htk_A Structural maintenance 20.6 3.6E+02 0.012 22.2 7.8 47 420-466 10-56 (60)
39 1xri_A AT1G05000; structural g 20.2 50 0.0017 30.5 2.5 34 1-36 1-34 (151)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.76 E-value=5.2e-05 Score=93.57 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001296 556 SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE 589 (1106)
Q Consensus 556 rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE 589 (1106)
.|..+...++..+. ++...+...-+...+|+.|
T Consensus 1148 ~L~~ele~L~~~Ie-el~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S 1148 DLSEELEALKTELE-DTLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHhhhccc
Confidence 34444444444433 2333344444444444433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.71 E-value=8.4e-05 Score=91.74 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~L 525 (1106)
+|..++..++.+...+..+...|+.+....+.+-+.+
T Consensus 1064 ~le~el~~l~~el~el~~el~~le~~l~~le~el~~l 1100 (1184)
T 1i84_S 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100 (1184)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.60 E-value=2.1 Score=44.74 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001296 481 GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1106)
Q Consensus 481 ~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1106)
.-|+.||. |=.+|+.++++...|-++.++|..+...+......+......+.++...+.
T Consensus 8 ~~L~~LQ~-lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 8 KQLIEISH-LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555654 445888888888888888888888887777777776666666665554443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.85 E-value=2.7 Score=43.91 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001296 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1106)
Q Consensus 492 eEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1106)
.||+........|..+.-++-...+..+.+++.+....+.++.+ .+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444444443333333 334445555666667777
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001296 572 VDSLNREREEFMNKMVHEHSEWFTKIQQ 599 (1106)
Q Consensus 572 lEsL~~ekEsF~~kMehE~s~~~eKiq~ 599 (1106)
+..|.-.|+.|...|...=-..+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888888888666666665543
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.31 E-value=6.3 Score=54.40 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=14.8
Q ss_pred HhHhhhhhhHHHHHHHHHHhchHHHHHHHHH
Q 001296 208 IASFKADCEEKEREIIRERQSLSDRKKILQQ 238 (1106)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe 238 (1106)
..+|.+.++.+.=++.+- =++.+|..-|+.
T Consensus 1665 LAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~ 1694 (3245)
T 3vkg_A 1665 FVAWMNGLSIYTIKVNNN-YKSSDFDDDLRM 1694 (3245)
T ss_dssp HHHHHTTCEEECCC-----CCHHHHHHHHHH
T ss_pred HHHHHhCCeeEEEeeeCC-CCHHHHHHHHHH
Confidence 456777776665554432 235556555543
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.33 E-value=1.4 Score=54.82 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001296 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 603 (1106)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE~s~~~eKiq~Erad 603 (1106)
|-..|++..+++...+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1031 e~~~L~qq~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1031 QNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556666666555555444443 567777777777777766666664
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.23 E-value=17 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=13.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhh
Q 001296 549 SLKDERDSLRQERDAMRDQHKRD 571 (1106)
Q Consensus 549 ~~~~E~erLK~EK~~~r~~~kre 571 (1106)
-+.+|..|=...-..+..++..=
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhc
Confidence 34566666666666666655543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.18 E-value=7.1 Score=48.82 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQL 513 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~ 513 (1106)
.|.+.|..+..+...|....|+|..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.48 E-value=8.5 Score=43.39 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001296 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1106)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eK 515 (1106)
.++..++.++....+.+.....+|....+.+.+.+++..+ ....|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4555555555555666666666666666666655443332 234556666655555555544444444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.92 E-value=3.3 Score=46.70 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001296 489 KLKEELDVVRAQKLELMV 506 (1106)
Q Consensus 489 eLKeEId~~R~Qke~Llk 506 (1106)
+|++|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.35 E-value=37 Score=34.21 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001296 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1106)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1106)
..||.-|++. ++-|. .|..++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus 3 ~~lE~qlkea-ae~ad------~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNY------HLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 45444 44456555 6666667788888888877666655566666666666655432211
Q ss_pred HhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001296 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1106)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1106)
.+.|+.+| ....-+|.+.+.| +..-.+.+..+++.++.+.-.+.......+.
T Consensus 72 -------Ed~yEeqI-------k~L~~kLKEAE~R--------------AE~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 -------EDKYEEEI-------KVLSDKLKEAETR--------------AEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp -------HHHHHHHH-------HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHH-------HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222 2223334444443 3344444555555555555555555555555
Q ss_pred hhhhhhHhHHHHhh
Q 001296 288 EKSNLDLTLVSLLK 301 (1106)
Q Consensus 288 ke~dl~~rl~~l~~ 301 (1106)
-...|...+..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555666665554
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.79 E-value=41 Score=37.29 Aligned_cols=61 Identities=8% Similarity=-0.028 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001296 484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544 (1106)
Q Consensus 484 lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre 544 (1106)
..+.+++-.|++..++.......+.+.|++++++-+++-+.+|..-++..-...+...++.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 3334445555555555555556666666666666666666666555555555555444443
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.22 E-value=67 Score=32.43 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHh
Q 001296 50 IAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129 (1106)
Q Consensus 50 ia~IskLE~ElydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVad 129 (1106)
|.+.+.||-+|..-.++.... +.=.+.|+.++.-+.... +-++.+..--.-|..+|.-|+.--..
T Consensus 12 in~qs~LeD~L~~~R~el~~~----~~ri~~lE~~r~~~~~l~-----------~~~~~~~~e~~~L~~~l~~E~~~R~~ 76 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQ----KAAIENYNQLKEDYNTLK-----------RELSDRDDEVKRLREDIAKENELRTK 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----------HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 566677777776655554322 222233333333332211 12233333334456666666666666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001296 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1106)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1106)
.|+.+..|..|.-+. +-|=|.+||.||+.+...-. .+-++...+...|.+.+.+-+.|+.+.-
T Consensus 77 aE~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~~~~--------------~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 77 AEEEADKLNKEVEDL---TASLFDEANNMVADARKEKY--------------AIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777763 33568999999987644433 3444555566666666666666655544
Q ss_pred Hh
Q 001296 210 SF 211 (1106)
Q Consensus 210 Sf 211 (1106)
.+
T Consensus 140 ~L 141 (154)
T 2ocy_A 140 NL 141 (154)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.50 E-value=59 Score=30.73 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 001296 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEAR 156 (1106)
Q Consensus 77 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~ 156 (1106)
+.+.|+.++..+...+.-++. ++.--.-|...|.-|+.--...|..+..|..|.-+. +-|=|.+||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN 68 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEAN 68 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345566666666666533322 444444466666666666667788888888877773 335689999
Q ss_pred HHHHHHhhhhHHHHHhhhhhhHHHHH
Q 001296 157 CMVENAQKKFAEAEAKLHAAESLQAE 182 (1106)
Q Consensus 157 aLv~~~eeKslEvE~KL~aAeak~AE 182 (1106)
.||+.+...-..+|.|...-.+-+++
T Consensus 69 ~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 69 NMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999977777777766655555544
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.07 E-value=1.3e+02 Score=31.11 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001296 435 KSLLQKEKEEVNIIKSDLQKS----LSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDK 510 (1106)
Q Consensus 435 k~~L~~dKEel~~lK~dlEK~----~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~ 510 (1106)
+..|....-+|...++|+|.. -+++++-..+.+.+.|+...+++ +|.+ =+.++..-.-|.-|+-+
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~----------El~E-Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLES----------ELDE-KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHH
Confidence 333444444444444444432 34455555566666666666554 4432 23333333444555555
Q ss_pred HHHHH
Q 001296 511 LQLEK 515 (1106)
Q Consensus 511 Lk~eK 515 (1106)
|+++-
T Consensus 173 Lk~El 177 (189)
T 2v71_A 173 LRQEL 177 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.95 E-value=1.1e+02 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDE 527 (1106)
+|-..|..+-.+.+........|...|.+++.++..|-.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555555554433
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.77 E-value=1.5e+02 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHhhhhHHHhhhhhHHHHHHhHhhhhhhHHHHHH
Q 001296 189 SAERKLQEVVAREDDLSRRIASFKADCEEKEREI 222 (1106)
Q Consensus 189 ~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~ 222 (1106)
+++..|..++.|...|+.....+..|++....-+
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544433
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.41 E-value=50 Score=36.41 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh----HHHhhhhhHH
Q 001296 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL----QEVVAREDDL 204 (1106)
Q Consensus 129 dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL----~eVEaRE~~L 204 (1106)
+.+.||.++......+ +..-.+-++|.....-+++++.++...+..+++..+-|||.--.+.-.| -.-++|-..|
T Consensus 370 t~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666655554443 2333455688888999999999999999999999999999754433333 2223333333
Q ss_pred HHHHhHhhhhhhHHHHHHHHH
Q 001296 205 SRRIASFKADCEEKEREIIRE 225 (1106)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~q 225 (1106)
.-++..++.+.+..++++..+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444333
No 19
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.47 E-value=92 Score=30.88 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.4
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001296 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1106)
Q Consensus 162 ~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1106)
+++.+.-++..|..|-.++.+|.-...+.+|..+-++.|..
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~ 48 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 48 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445556667777777777777777777777776766654
No 20
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.80 E-value=84 Score=29.08 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001296 653 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAE 714 (1106)
Q Consensus 653 E~a~kE~Eev~lE~~rLe~ER~Ei~~~ke~le~e~~EL~~lse~LK~QRE~~~~ERe~fl~~ 714 (1106)
+.+..++..+..+-.+|-.|=.++..++..++.++..+..-++.|..+-+.|.++++.|..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888888888888888888888988888888888877543
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.90 E-value=72 Score=31.25 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001296 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1106)
Q Consensus 489 eLKeEId~~R~Qke~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1106)
+++++++.++.+...+.+|.-+||.+....-..-+.+...-++|+++......+-..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777766666655555555555555555555554444443
No 22
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.80 E-value=28 Score=34.52 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=42.7
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001296 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1106)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1106)
|..+|.-|+.--...|.....|..|.-+. +-|=|.+||.||+.+...-..+| ++...+.+.|.
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~L---TasLFeEAN~MVa~ar~~~~~~e--------------~r~~~L~~ql~ 113 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNLVADARMEKYAIE--------------ILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHH--------------HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 55555555555555666666676666663 23568999999988755444444 44555555666
Q ss_pred HHhhhhhHHHHH
Q 001296 196 EVVAREDDLSRR 207 (1106)
Q Consensus 196 eVEaRE~~LrRe 207 (1106)
+.+++-+.|+.+
T Consensus 114 e~e~ll~~lq~Q 125 (135)
T 2e7s_A 114 EKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHCC------
T ss_pred HHHHHHHHHHHH
Confidence 666555555444
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.05 E-value=2e+02 Score=34.16 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=74.2
Q ss_pred HHHHHHHHhHHHHhhhhhHHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhhhHHHHHHHHHHhhhhH
Q 001296 334 EIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1106)
Q Consensus 334 EIQKLldeh~a~L~~Kk~EFElEl---E~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1106)
+||-||+.|+--|..+..++=.++ .+.+++.+.=+..+...|..+-......+..+.+--.+|+.+...|+++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---- 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH----
Confidence 689999999988887766655443 4556666777777777776666666655555555555555555444432
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 001296 411 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 490 (1106)
Q Consensus 411 ~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseL 490 (1106)
|..+..+|..=+-.|..+-.+|+++-+.|..|.+--.--+.+-=.-+=+...|.-+|-+|
T Consensus 126 --------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 126 --------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 222222222222233333444445555555555444333444334444555565555555
Q ss_pred HH
Q 001296 491 KE 492 (1106)
Q Consensus 491 Ke 492 (1106)
.|
T Consensus 186 eQ 187 (562)
T 3ghg_A 186 EQ 187 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.88 E-value=2.3e+02 Score=26.91 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhh-HHHHHHHH
Q 001296 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR-EEAVIERE 310 (1106)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~r-Eee~~~~~ 310 (1106)
|..++.+........-..|..=..-+.+.-+.+..++-+|+ .|+.....|...+++.-.+ +.++....
T Consensus 13 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~-----------~l~~~~~~LE~~l~e~e~~~~~~l~~~q 81 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEID-----------NVKKQCANLQNAIADAEQRGELALKDAR 81 (129)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHH
Q 001296 311 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367 (1106)
Q Consensus 311 ~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeE 367 (1106)
..+...|.+|..+ +.+++..+.++..-|+.|.. ++.|+..-||.+|-|
T Consensus 82 ~~i~~lE~eL~~~--------r~e~~~ql~EYq~LlnvKl~-Ld~EIatYRkLLEgE 129 (129)
T 3tnu_B 82 NKLAELEEALQKA--------KQDMARLLREYQELMNTKLA-LDVEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHCcC
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.29 E-value=3.2e+02 Score=30.22 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=24.8
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001296 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 424 (1106)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL 424 (1106)
...+.+.++.+..+.|.+..+.+...=.+--++++.+...+.-|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 33444555555555566666666555555556666666655443
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.53 E-value=2.7e+02 Score=25.11 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHhHHHHhhh-HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHH
Q 001296 279 EEKFKALNEEKSNLDLTLVSLLKR-EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 357 (1106)
Q Consensus 279 e~~~~~Lk~ke~dl~~rl~~l~~r-Eee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElEl 357 (1106)
..+...|+...+.+..+++++-.+ +.++......+...|.+|..+ +.+++..+.++..-|+.|.. +++|+
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~--------r~e~~~ql~EYq~LlnvK~~-Le~EI 72 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEM--------RARMQQQLDEYQELLDIKLA-LDMEI 72 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh-hHHHH
Q ss_pred HHHhhhHHHH
Q 001296 358 AIKYKLAEDE 367 (1106)
Q Consensus 358 E~kRKs~eeE 367 (1106)
..-||.++-|
T Consensus 73 atYRkLLEGE 82 (86)
T 1x8y_A 73 HAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
No 27
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=32.00 E-value=43 Score=31.88 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=34.5
Q ss_pred hhhhhhhhhhHHHHHHHHHhhh---------------hHHHHHhhhhhhHHHHHHhcch
Q 001296 144 TKVAADSKFAEARCMVENAQKK---------------FAEAEAKLHAAESLQAEANRYH 187 (1106)
Q Consensus 144 iK~tsesKLaEA~aLv~~~eeK---------------slEvE~KL~aAeak~AEa~Rk~ 187 (1106)
-|.+|+.+|..|..-++.+.+| +.+||.++++|...+.++.+-.
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l 80 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAAL 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999998 4567888888888777776543
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.76 E-value=2.2e+02 Score=27.51 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 001296 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK 517 (1106)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKek 517 (1106)
.|..|+.+|+.++..++.=+.........|+-- . +.|.-|++..|+++...+.|.+.|+.+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~------i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH------V----SELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554433333333333221 1 456677788888888888888888876653
No 29
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=28.88 E-value=29 Score=31.75 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCCCCCcccccCCCccccCCCC-cHHHHHHHHHccC
Q 001296 1 MASPSSGRLAITPSSRVLQSPLS-DESIWKRLKEAGL 36 (1106)
Q Consensus 1 ~~~p~~~~l~~~~g~rv~~~~~~-d~~iWkr~~eaG~ 36 (1106)
|+.||.+--.|+||. +.+++.. ..+++..|+..|+
T Consensus 1 m~~pp~~~~~i~~~~-l~~~~~p~~~~~~~~L~~~gi 36 (150)
T 4erc_A 1 MGVQPPNFSWVLPGR-LAGLALPRLPAHYQFLLDLGV 36 (150)
T ss_dssp CCCCCTTCEEEETTT-EEEESCCCSHHHHHHHHHTTE
T ss_pred CCCCCCCCEEeccCc-eeeecCCCCHHHHHHHHHCCC
Confidence 889999888899984 6677776 7888999999995
No 30
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.76 E-value=3.5e+02 Score=24.96 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=19.5
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001296 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1106)
Q Consensus 503 ~LlkEad~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1106)
.|..|-..|-++...-|+|.+.||.=.+.++.|+....
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555555555555555444
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.71 E-value=2.2e+02 Score=26.40 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred Hhhhhhhh-hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHH
Q 001296 138 RAESAETK-VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 208 (1106)
Q Consensus 138 r~E~AeiK-~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRer 208 (1106)
|++.++.+ -.++.....+-.=|.+++.|..-+|.-|-.+...+.+++.+..+.+....+.|+--.+|.|.+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.83 E-value=4.6e+02 Score=24.98 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHH
Q 001296 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (1106)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~ 311 (1106)
|..++.+.+......-..|..=...+.+.-+.+..++-+|+..++....--..|.+-+..... ++.....
T Consensus 15 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~----------~l~~~q~ 84 (131)
T 3tnu_A 15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM----------QLAQIQE 84 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHH
Q ss_pred HHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhhHHHH
Q 001296 312 SLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367 (1106)
Q Consensus 312 ~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~kRKs~eeE 367 (1106)
.+...|.+|..+ +.+++..+.++..-|+.|.. ++.|+..-||.++-|
T Consensus 85 ~i~~lE~eL~~~--------r~em~~ql~EYq~Ll~vKl~-Ld~EIatYRkLLEGE 131 (131)
T 3tnu_A 85 MIGSVEEQLAQL--------RCEMEQQNQEYKILLDVKTR-LEQEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHCcC
No 33
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.80 E-value=5.4e+02 Score=29.86 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=8.9
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHH
Q 001296 250 LNEREDHILSKLQELSRKEKELE 272 (1106)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLE 272 (1106)
+++++..+.++...++.....||
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHH
Confidence 33333333333333333333333
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.25 E-value=3.8e+02 Score=26.24 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=5.3
Q ss_pred hhHHHHhhhhH
Q 001296 408 KDLVERSHLLE 418 (1106)
Q Consensus 408 kdl~~Ksk~LK 418 (1106)
..++.|...++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34445554444
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.07 E-value=4.2e+02 Score=24.37 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001296 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1106)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE 519 (1106)
+|..+-+....++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444445444444444444444455555555566666666666666666655543
No 36
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.92 E-value=8.3e+02 Score=28.82 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-h
Q 001296 398 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-M 476 (1106)
Q Consensus 398 ~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-t 476 (1106)
++.+-|.+-=+..+....++-.-+++|...+|.++.+...-.+-..+...|..-..+.-.-+++|.+...+-..+|.. |
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001296 477 KSEAGELSV-----LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1106)
Q Consensus 477 eeER~E~lr-----LQseLKeEId~~R~Qke~LlkEad~Lk~eKekFE~E 521 (1106)
+.||.-+++ |..+||++=+.++.. ...+++.|+.|...+...
T Consensus 536 e~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 536 ENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.93 E-value=1.9e+02 Score=26.15 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001296 283 KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1106)
Q Consensus 283 ~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1106)
.++.+-+..|..+...|..++.-+..++..|..|+.++..|+-.|..
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888999999999999999999998888777654
No 38
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.57 E-value=3.6e+02 Score=22.17 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=29.5
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001296 420 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (1106)
Q Consensus 420 kEksLkaeEK~le~ek~~L~~dKEel~~lK~dlEK~~a~~e~q~~qi 466 (1106)
.+..+..........+..+.+.+..+..+..+|++++.+|..-+.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444344555566667777777777777777777777665555
No 39
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=20.24 E-value=50 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 001296 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1106)
Q Consensus 1 ~~~p~~~~l~~~~g~rv~~~~~~d~~iWkr~~eaG~ 36 (1106)
|-.||.+--.|+|| +.|++..+..+|..|+..|+
T Consensus 1 ~~~pp~n~~~v~~~--l~~s~~~~~~d~~~L~~~gi 34 (151)
T 1xri_A 1 HLIPPLNFSMVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp CBCCCTTCEEEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CccCCcCcCeeCCC--eEECCCcCccCHHHHHHCCC
Confidence 44577766679998 88999999999999999996
Done!