BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001297
(1105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 205/336 (61%), Gaps = 25/336 (7%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDV 160
+++V +R RPL+ RE G+ Y D V + + + ++ FDRVF + ++ VY+
Sbjct: 5 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEE 64
Query: 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREF 220
A P++ +A++G NGT+FAYG T+SGKT+TM G ++ G+IP AI D+F I+ P REF
Sbjct: 65 IAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREF 124
Query: 221 LLRVSYLEIYNEVINDLLDPTGQN--LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAG 277
LLRVSY+EIYNE I DLL T + L +RED + YV + EEVV + AL +I G
Sbjct: 125 LLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG 184
Query: 278 EEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIFSQLVRWFFLSVKTAYLFQ 335
E+ RH G N SSRSHTIF +++ES + G+ +G SVK ++L
Sbjct: 185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEG------------SVKVSHLNL 232
Query: 336 L-----YESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQ 389
+ +++T G+R KEG IN+SL LG VI KLS+G+ + YRDSKLTR+LQ
Sbjct: 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQ 292
Query: 390 SSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
+SL G+ +ICT+TP S +ET L+FAS AK
Sbjct: 293 NSLGGNAKTRIICTITPV--SFDETLTALQFASTAK 326
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 191/337 (56%), Gaps = 27/337 (8%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
+I V RFRPL+E E RGD+ IA + D +V + YAFDRVF + ++VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP ++D+F+ I
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLF 334
G+ +RHV N N SSRSH+IF + ++ + E LS K YL
Sbjct: 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK------------LSGK-LYLV 230
Query: 335 QLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS 391
L S SKT G E INKSL LG VI L+EG +++VPYRDSK+TR+LQ S
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDS 289
Query: 392 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428
L G+ +++ +P+S + ET +TL F RAK ++
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 192/349 (55%), Gaps = 31/349 (8%)
Query: 88 MAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRV 147
MA+P + +I V RFRPL+E E RGD+ G+ V P YAFDRV
Sbjct: 1 MADPAEC------NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---YAFDRV 51
Query: 148 FGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLA 204
F + ++VY+ A+ +VK +EG NGT+FAYG TSSGK HTM G + P GIIP
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRI 111
Query: 205 IKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEE 262
++D+F+ I EF ++VSY EIY + I DLLD + NL V ED YV+G E
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVR 322
V SP + I G+ +RHV N N SSRSH+IF + ++ + E
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK--------- 222
Query: 323 WFFLSVKTAYLFQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPY 379
LS K YL L S SKT G E INKSL LG VI L+EG +++VPY
Sbjct: 223 ---LSGK-LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPY 277
Query: 380 RDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428
RDSK+TR+LQ SL G+ +++ +P+S + ET +TL F RAK ++
Sbjct: 278 RDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 190/336 (56%), Gaps = 27/336 (8%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
+I V RFRPL+E E RGD+ IA + D +V + YAFDRVF + ++VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP ++D+F+ I
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLF 334
G+ +RHV N N SSRSH+IF + ++ + E LS K YL
Sbjct: 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK------------LSGK-LYLV 230
Query: 335 QLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS 391
L S SKT G E INKSL LG VI L+EG +++VPYRDSK+TR+LQ S
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDS 289
Query: 392 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
L G+ +++ +P+S + ET +TL F RAK +
Sbjct: 290 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 219 bits (559), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 197/359 (54%), Gaps = 23/359 (6%)
Query: 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPA-TAYAFDRVFGPHANSQEVY 158
DSI V RFRPL++ E + G + + + N + A Y FD+VF P+A+ ++VY
Sbjct: 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNN-VEENCISIAGKVYLFDKVFKPNASQEKVY 69
Query: 159 DVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG---DQNSPGIIPLAIKDVFS-IIQD 214
+ AA+ +V + G NGT+FAYG TSSGKTHTM G D GIIP + D+F+ I
Sbjct: 70 NEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM 129
Query: 215 TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSF 273
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP
Sbjct: 130 EVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEV 189
Query: 274 IAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYL 333
I G+ +RH+ N N SSRSH++F + ++ + ++ LS K YL
Sbjct: 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK------------LSGKL-YL 236
Query: 334 FQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQS 390
L S SKT G E INKSL LG VI L++G +H+PYRDSKLTR+LQ
Sbjct: 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQE 296
Query: 391 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQRE 449
SL G+ +++ +PAS + ET +TL F RAK V+ N+ + + ++Y++E
Sbjct: 297 SLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 186/349 (53%), Gaps = 27/349 (7%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQE 156
S +SI V RFRP + E + G + I + D + ++ FDRVF +
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG----DQNSPGIIPLAIKDVF-SI 211
++D + +P V + G NGTVFAYG T +GK++TM G D + G+IP ++ +F SI
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123
Query: 212 IQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHA 270
+ E+ +RVSY+EIY E I DLL P NL V E+ +G YV+G+ E V S
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEV 183
Query: 271 LSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI--ESSDHGDEYDGVIFSQLVRWFFLSV 328
+ G R V + N N SSRSH+IF + I ++ + G G +F
Sbjct: 184 YEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLF----------- 232
Query: 329 KTAYLFQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLT 385
L L S KT +G +E INKSL LG VI L++GK+SHVPYRDSKLT
Sbjct: 233 ----LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 434
R+LQ SL G+ +LI +P+S + ET +TL+F RAK ++ A N
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 193/346 (55%), Gaps = 21/346 (6%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYAD---GDKIVRNEYNPA----TAYAFDRVF 148
Q S +S+ V +R RP++ +E + D G V+N A + FD V+
Sbjct: 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVY 76
Query: 149 GPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAI 205
+A E+YD RP+V + ++G NGT+FAYG T +GKT+TM G + P G+IP +
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136
Query: 206 KDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL--DPTGQ-NLRVREDAQGTYVEGIKEE 262
+F+ I + +++L+R SYLEIY E I DLL D T + L+ R D G YV+ +
Sbjct: 137 DHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDT-GVYVKDLSSF 195
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVR 322
V S + G ++R VG+ N N SSRSH IF + IE S+ G DG ++ +
Sbjct: 196 VTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVG--LDGENHIRVGK 253
Query: 323 WFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDS 382
+ + + +KT G R KE + IN SL LG VI L +GK++H+PYRDS
Sbjct: 254 LNLVDLAGSE-----RQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDS 308
Query: 383 KLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428
KLTRLLQ SL G+ ++ V PAS ++EET TL++A+RAK ++
Sbjct: 309 KLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 196 bits (497), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 191/348 (54%), Gaps = 30/348 (8%)
Query: 98 SGDSISVTIRFRPLSEREFQ-------RGDE-----IAWYADGDKIVRNEYNPATAYAFD 145
S D+I V +R RPL+ RE + R DE I + +K + FD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAI 205
V+ + + ++ + +P++ A +EG N T+FAYG T +GKT TM G++ PG IP +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 206 KDVFSIIQDTPGRE-FLLRVSYLEIYNEVINDLLDPTGQNLRVRED-AQGTYVEGIKEEV 263
K +F I + + FL+ SYLE+YNE I DL+ L ++ED +G YV+G+
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 264 VLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRW 323
V + + + G +RHV + N SSRSH+IF + IE S+ VI ++ V
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSE-------VIENKEV-- 231
Query: 324 FFLSVKTAYLFQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYR 380
+ V L L S SKT TG EG+ IN SL LG VI KL EG A+H+PYR
Sbjct: 232 --IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYR 288
Query: 381 DSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428
DSKLTRLLQ SL G+ + ++PAS++ +ET +TL++A RAK+++
Sbjct: 289 DSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 192/374 (51%), Gaps = 53/374 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYAD---GDKIVRNEYN-----PATAYAFDRV 147
Q + +++ V R RPLS +E G E D G +RN P T + FD V
Sbjct: 17 QGASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKT-FTFDAV 75
Query: 148 FGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLA 204
+ + ++YD RP++ + ++G NGTVFAYG T +GKT+TM G P G+IP A
Sbjct: 76 YDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNA 135
Query: 205 IKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP-TGQNLRVREDAQ-GTYVEGIKEE 262
+ +F+ I + +++L+R SYLEIY E I DLL G+ L ++E+ + G Y++ +
Sbjct: 136 FEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSF 195
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG-DEYDGVIFSQLV 321
V + + G + R VGS + N +SSRSH IF + +E S+ G D D + +L
Sbjct: 196 VTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKL- 254
Query: 322 RWFFLSVKTAYLFQLYESSKTETTGL---------------------------RRKEGSY 354
L L S + G R KE S
Sbjct: 255 ----------NLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASK 304
Query: 355 INKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 414
IN SL LG VI L+ +++H+PYRDSKLTRLLQ SL G+ ++ T+ PAS S +E+
Sbjct: 305 INLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDES 364
Query: 415 HNTLKFASRAKRVE 428
+TL+FA+RAK ++
Sbjct: 365 LSTLRFANRAKNIK 378
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 191/359 (53%), Gaps = 38/359 (10%)
Query: 95 PQR-SGDSISVTIRFRPLSERE--FQRGDEIAWYADGDKIVRNEYNP--ATAYAFDRVFG 149
PQ+ S +I V +R RPL+ RE + + + + + R+ + + FDR FG
Sbjct: 17 PQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFG 76
Query: 150 PHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG-----------DQNSP 198
P + +VY V P+++ + G N TVFAYG T +GKTHTM G D +
Sbjct: 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDI 136
Query: 199 GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL--DPTGQNLRVREDAQ---G 253
GIIP A+ +F ++ E+ +R+SYLE+YNE + DLL D T + +R+ +D+
Sbjct: 137 GIIPRALSHLFDELRMME-VEYTMRISYLELYNEELCDLLSTDDTTK-IRIFDDSTKKGS 194
Query: 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313
++G++E V S + G+E R + N SSRSHT+F++++ ++G E +
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254
Query: 314 GVIFSQLVRWFFLSVKTAYLFQLYESSKTETTG----LRRKEGSYINKSLLTLGTVIGKL 369
L + L L S G +R +E IN+SLLTLG VI L
Sbjct: 255 D----------MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 370 SEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428
+ +A HVPYR+SKLTRLLQ SL G S+I T++P +EET +TL++A RAK ++
Sbjct: 305 VD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 182/341 (53%), Gaps = 26/341 (7%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVA 161
+ V +R RPL +E G + + + R + F V A + VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVE-PGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-------QNSPGIIPLAIKDVFSIIQD 214
+P+++A EG N TVFAYG T SGKT+TM G+ ++ GI+P A+ + F +I +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 215 TPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRVREDAQGTYVE-GIKEEVVLSPGHAL 271
+ L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V L
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190
Query: 272 SFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF--FLSVK 329
S + G RH G+ + N LSSRSHT+FT+ +E G S+L R L V
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQR-------GRAPSRLPRPAPGQLLVS 243
Query: 330 TAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKL 384
+ L S KT +TG R KE IN SLL LG VI L + + SH+PYRDSK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
TR+L+ SL G+ +I V+P+SS +ET NTL +ASRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 183/352 (51%), Gaps = 34/352 (9%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFDRVFGP- 150
+ V +R RP++ RE + D +K++ N N + +A+D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 151 -------HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPL 203
+A V+ +++ A +G N +FAYG T SGK++TM G + PG+IP
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 204 AIKDVFSIIQDTPGRE--FLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQ-GTYVEG 258
+F Q E F + VSY+EIYNE + DLLDP G Q L+VRE + G YV+G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDG 182
Query: 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318
+ + V S S ++ G + R V + N N SSRSH +F + + + + D G
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY-DVKSGTSGE 241
Query: 319 QLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GK 373
++ + + + + ++KT G R KEGS INKSL TLG VI L++ K
Sbjct: 242 KVGKLSLVDLAGSE-----RATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 374 ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
VPYRDS LT LL+ SL G+ +++ TV+PA+ + +ET +TL++A RAK
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 182/341 (53%), Gaps = 26/341 (7%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVA 161
+ V +R RPL +E G + + + R + F V A + VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVE-PGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-------QNSPGIIPLAIKDVFSIIQD 214
+P+++A EG N TVFAYG T SGKT+TM G+ ++ GI+P A+ + F +I +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 215 TPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRVREDAQGTYVE-GIKEEVVLSPGHAL 271
+ L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V L
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190
Query: 272 SFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF--FLSVK 329
S + G RH G+ + N LSSRSHT+FT+ ++ G S+L R L V
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQR-------GRAPSRLPRPAPGQLLVS 243
Query: 330 TAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKL 384
+ L S KT +TG RKE IN SLL LG VI L + + S++PYRDSK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKI 303
Query: 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
TR+L+ SL G+ +I V+P+SS +ET NTL +ASRA+
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 196/382 (51%), Gaps = 44/382 (11%)
Query: 85 EELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNP---AT 140
+++ +P++ P G S+ V +R RP + RE R + I + + N P
Sbjct: 8 QQMGRDPINMP---GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPK 64
Query: 141 AYAFDRVFGPH--------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192
+++FD + H A+ ++VY +++ A EG N +FAYG T +GK++TM
Sbjct: 65 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 124
Query: 193 GDQ--NSPGIIPLAIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRV 247
G Q + GIIP +D+FS I DT + + VSY+EIY E + DLL+P + NLRV
Sbjct: 125 GKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 184
Query: 248 REDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESS 306
RE G YVE + + V S + +G + R V + N N SSRSH +F ++
Sbjct: 185 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 244
Query: 307 DHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTG---LRRKEGSYINKSLLTLG 363
H E + I ++ V L L S + ++TG R KEG+ INKSL TLG
Sbjct: 245 RHDAETN--ITTE-------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLG 295
Query: 364 TVIGKLSE-----------GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
VI L+E K +PYRDS LT LL+ +L G+ +++ ++PA + +
Sbjct: 296 KVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYD 355
Query: 413 ETHNTLKFASRAKRVEIYASRN 434
ET +TL++A RAK++ S N
Sbjct: 356 ETLSTLRYADRAKQIRNTVSVN 377
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 184/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + +D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRVRPFNLAERKASAHSIVESDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGER-SPNEEYCWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 248 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 294
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 422 SRAKRV 427
RAK +
Sbjct: 354 HRAKNI 359
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 41/369 (11%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPA---TAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319
+ V S + +G + R V + N N SSRSH +F ++ H E + I ++
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN--ITTE 239
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTG---LRRKEGSYINKSLLTLGTVIGKLSE----- 371
V L L S + ++TG R KEG+ INKSL TLG VI L+E
Sbjct: 240 -------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 372 ------GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
K +PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 426 RVEIYASRN 434
++ S N
Sbjct: 353 QIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 41/369 (11%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPA---TAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319
+ V S + +G + R V + N N SSRSH +F ++ H E + I ++
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN--ITTE 239
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTG---LRRKEGSYINKSLLTLGTVIGKLSE----- 371
V L L S + ++TG R KEG+ INKSL TLG VI L+E
Sbjct: 240 -------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 372 ------GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
K +PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 426 RVEIYASRN 434
++ S N
Sbjct: 353 QIRNTVSVN 361
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 152/294 (51%), Gaps = 21/294 (7%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGII 201
Y FD +G + Q++Y + +P+++ +EG N +V AYG T +GKTHTM G PG+I
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 202 PLAIKDVFSIIQD--TPGREFLLRV--SYLEIYNEVINDLLDPTGQNLRVREDAQG-TYV 256
P A+ D+ + ++ GR + L V SYLEIY E + DLLDP +L +RED +G +
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILI 186
Query: 257 EGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316
G+ ++ + S +R VG+ N SSRSH + + ++ +
Sbjct: 187 PGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRER-------- 238
Query: 317 FSQLVRWFFLSVKTAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK 373
+ F YL L S +T GLR KE IN SL LG V+ L++G
Sbjct: 239 ----LAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG- 293
Query: 374 ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
VPYRDSKLTRLLQ SL G H LI + P +T + L FA+R+K V
Sbjct: 294 LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 41/369 (11%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNP---ATAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319
+ V S + +G + R V + N N SSRSH +F ++ H E + I ++
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN--ITTE 239
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTG---LRRKEGSYINKSLLTLGTVIGKLSE----- 371
V L L S + ++TG R KEG+ INKSL TLG VI L+E
Sbjct: 240 -------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 372 ------GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
K +PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 426 RVEIYASRN 434
++ S N
Sbjct: 353 QIRNTVSVN 361
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLDGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 248 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 294
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 422 SRAKRV 427
RAK +
Sbjct: 354 HRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 248 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 294
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 422 SRAKRV 427
RAK +
Sbjct: 354 HRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EVPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 248 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 294
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 422 SRAKRV 427
RAK +
Sbjct: 354 HRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 248 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 294
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 422 SRAKRV 427
RAK +
Sbjct: 354 HRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 60
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 61 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 119
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 120 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 178
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 239 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 285
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 286 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 344
Query: 422 SRAKRV 427
RAK +
Sbjct: 345 HRAKNI 350
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 15 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 71
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 72 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 130
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 131 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 189
Query: 251 AQ---GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+ G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 190 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 249
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 250 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 296
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 297 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 355
Query: 422 SRAKRV 427
RAK +
Sbjct: 356 HRAKNI 361
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 53/366 (14%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 12 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 68
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 69 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 127
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 128 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 186
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 187 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 246
Query: 305 SSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLT 361
++ G+E + + L L S +G R +E IN+SLLT
Sbjct: 247 TTIDGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 293
Query: 362 LGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 421
LG VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A
Sbjct: 294 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 352
Query: 422 SRAKRV 427
RAK +
Sbjct: 353 HRAKNI 358
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 182/363 (50%), Gaps = 53/363 (14%)
Query: 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFDRVF 148
G +I V +R RP + E + D VR E + T Y FD VF
Sbjct: 1 GKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVF 57
Query: 149 GPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---------- 198
G +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 58 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWEEDP 116
Query: 199 --GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED--- 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 117 LAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 251 AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---ESSD 307
+G ++G++E V + + G R + N SSRSH++F++ I E++
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 308 HGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGL---RRKEGSYINKSLLTLGT 364
G+E + + L L S +G R +E IN+SLLTLG
Sbjct: 236 DGEE-------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 282
Query: 365 VIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRA 424
VI L E + HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RA
Sbjct: 283 VITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 341
Query: 425 KRV 427
K +
Sbjct: 342 KNI 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 161/298 (54%), Gaps = 18/298 (6%)
Query: 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN 196
N + FD VF + EV++ +P++++ + G N TV AYG T +GKTHTM G +
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD 128
Query: 197 SPGIIPLAIKDVFSIIQDTPGREFL-LRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GT 254
PG++ L + ++ + + + VSYLE+YNE I DLL +G L VRED Q G
Sbjct: 129 EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP-LAVREDTQKGV 187
Query: 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314
V G+ S L + G ++R + N SSRSH +F + + D
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS--- 244
Query: 315 VIFSQLVRWFFLSVKTAYLFQLYESSKTETTG---LRRKEGSYINKSLLTLGTVIGKLSE 371
+Q VR +S L L S + T+G R EG+ IN+SLL LG VI L++
Sbjct: 245 --INQNVRIAKMS-----LIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD 297
Query: 372 GKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
K H+PYR+SKLTRLL+ SL G+ +I V+P+S ++T+NTLK+A+RAK +
Sbjct: 298 SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 169/335 (50%), Gaps = 48/335 (14%)
Query: 141 AYAFDRVFGPH-------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193
++ FD+ F H A + VYD + EG + +FAYG T SGK++TM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 194 DQNSPGIIPLAIKDVFSII----QDTPGREFLLRVSYLEIYNEVINDLLDPTGQN----- 244
+ PG+IP +D+F I +TP + ++VSY E+YNE + DLL P N
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 245 LRVRED-AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI 303
L+VRE +G YV+ + E V + ++ G+ R V S N SSRSH +FT+M+
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 304 ESSDHGDEYDGVI-FSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTL 362
+ H E D S +R L+ + TE TG R +EGS INKSL TL
Sbjct: 277 KQIHHDLETDDTTERSSRIRLVDLAGSE-------RAKSTEATGQRLREGSNINKSLTTL 329
Query: 363 GTVIGKLSEGKASH---------------------VPYRDSKLTRLLQSSLSGHGHVSLI 401
G VI L++ K+S VPYRDS LT LL+ SL G+ ++I
Sbjct: 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI 389
Query: 402 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 436
++P + +ET +TL++A +AKR+ A N++
Sbjct: 390 ACISP--TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 183/333 (54%), Gaps = 19/333 (5%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY--NPATAYAFDRVFGPHANSQEVYD 159
I V R RPL+E+E ++ + V + + + + +DRVF A+ ++++
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFE 74
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQ-DTPGR 218
+ +V++A++G N +FAYG T SGKT T++G +++PG+ P A K++F+I++ D+
Sbjct: 75 -DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRF 133
Query: 219 EFLLRVSYLEIYNEVINDLLDPTGQ---NLRVREDAQG-TYVEGIKEEVVLSPGHALSFI 274
F L+ +E+Y + + DLL P L +++D++G +VE + + + +
Sbjct: 134 SFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMIL 193
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLF 334
G E RHV N N SSRSH I +++IES D + + + F+ + +
Sbjct: 194 ERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQS-----AARGKLSFVDLAGSERV 248
Query: 335 QLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG 394
+ K+ + G + KE INKSL LG VIG LS G H+PYR+ KLT L+ SL G
Sbjct: 249 K-----KSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLTMLMSDSLGG 302
Query: 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
+ + V+PA S+++ET+N+L +ASR + +
Sbjct: 303 NAKTLMFVNVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 199/373 (53%), Gaps = 25/373 (6%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY--NPATAYAFDRVFGPHANSQEVYD 159
I V R RPL E+E + A + + V + + + A + +DRVF +A +V++
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 66
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQ-DTPGR 218
+ +V++A++G N +FAYG T SGKT T++G ++PG+ P A+ ++F I++ D+
Sbjct: 67 -DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKF 125
Query: 219 EFLLRVSYLEIYNEVINDLLDPTGQN---LRVREDAQGTY-VEGIKEEVVLSPGHALSFI 274
F L+ +E+Y + + DLL P L +++D++G VE + + + + I
Sbjct: 126 SFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTII 185
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLF 334
G E RH N SSRSH I +++IES++ + +Q + LS L
Sbjct: 186 QRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTN--------LQTQAIARGKLSF--VDLA 235
Query: 335 QLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG 394
K+ + G + KE INKSL LG VI LS G H+PYR+ KLT L+ SL G
Sbjct: 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGG 294
Query: 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKK---YQREIS 451
+ + ++PA S+++ETHN+L +ASR + + S+N E + +KK Y +E +
Sbjct: 295 NAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQA 354
Query: 452 SLK---EELDQLK 461
K EEL++++
Sbjct: 355 GRKGDDEELEEIQ 367
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 26/324 (8%)
Query: 117 QRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQE-VYDVAARPVVKAAMEGVNG 175
+R +I D + V N ++ D V H SQ+ VY+ A+ VV A++G NG
Sbjct: 49 KRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL--HDASQDLVYETVAKDVVSQALDGYNG 106
Query: 176 TVFAYGVTSSGKTHTMHG---DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNE 232
T+ YG T +GKT+TM G + GI+P A++ VF +I++ P +RVSYLEIYNE
Sbjct: 107 TIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNE 166
Query: 233 VINDLLD------PTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSN 286
+ DLL P+ + + E+ QG +++G+ + A S + GE +R + S+
Sbjct: 167 SLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASH 226
Query: 287 NFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYES---SKTE 343
N SSRSH IFT+ +E+ + I S++ L L S K+
Sbjct: 227 TMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKI-----------NLVDLAGSERLGKSG 275
Query: 344 TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 403
+ G KE +YINKSL L I L + K H+P+R KLT L+ SL G+ ++ L+
Sbjct: 276 SEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTN 335
Query: 404 VTPASSSMEETHNTLKFASRAKRV 427
+ ++ +EET ++L+FASR K V
Sbjct: 336 IYGEAAQLEETLSSLRFASRMKLV 359
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 121/210 (57%), Gaps = 9/210 (4%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
SI V RFRPL+E E RGD+ I + + +V + P Y FDRV P+ ++VY+
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKP---YVFDRVLPPNTTQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP D+F I
Sbjct: 64 ACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIE 304
G+ +RHV N N SSRSH+IF + I+
Sbjct: 184 DEGKANRHVAVTNMNEHSSRSHSIFLINIK 213
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/355 (32%), Positives = 178/355 (50%), Gaps = 35/355 (9%)
Query: 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPH 151
D+I V R RP E E R W + V + A A ++FD+VF P
Sbjct: 59 DNIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSI 211
++ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F
Sbjct: 118 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176
Query: 212 IQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLS 266
I+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 267 PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFL 326
P H + + +R S N SSRSH + L + H ++ + +
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE------------I 283
Query: 327 SVKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKL 384
SV + L L ES KT T R E IN+SL L VI L + K H+PYR+SKL
Sbjct: 284 SVGSINLVDLAGSESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKL 339
Query: 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 438
T LL SL G+ + V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 340 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 394
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 172/345 (49%), Gaps = 29/345 (8%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE----IAWYADGDKIVRNEY-NPATAYAFDRVFGPHA 152
S +I V R RP++ +E G E + + AD D I+ + ++ D+VF P A
Sbjct: 2 SKGNIRVIARVRPVT-KEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQA 60
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ Q+V+ + +V + ++G N +FAYG T +GKT+TM G +PGI A++ +FS +
Sbjct: 61 SQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEV 119
Query: 213 QDTPGR-EFLLRVSYLEIYNEVINDLLDPTGQN---LRVREDAQG-TYVEGIKEEVVLSP 267
Q+ E+ + VS EIYNEV+ DLL Q +R+ D G YV G+ E V S
Sbjct: 120 QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSV 179
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327
G +R N N SSRSH + + + GV S +R +
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR---------GVDCSTGLR----T 226
Query: 328 VKTAYLFQLYES---SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKL 384
L L S K+ G R +E +INKSL LG VI L + HVP+R+SKL
Sbjct: 227 TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKL 285
Query: 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEI 429
T LLQ SLSG ++ V+P + ET +LKFA R + VE+
Sbjct: 286 TYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 173/347 (49%), Gaps = 42/347 (12%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED+ Q V G++E
Sbjct: 193 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQE 250
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGVIFSQ 319
+V + I G R G N SSRSH F +++ + HG
Sbjct: 251 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK--------- 301
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPY 379
F V A + ++S + R EG+ INKSLL L I L + KA H P+
Sbjct: 302 -----FSLVDLAGNERGADTSSADRQT--RMEGAEINKSLLALKECIRALGQNKA-HTPF 353
Query: 380 RDSKLTRLLQSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAK 425
R+SKLT++L+ S G + +I ++P SS E T NTL++A R K
Sbjct: 354 RESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 177/354 (50%), Gaps = 35/354 (9%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 68 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 127 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 186 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 245
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327
H + + +R S N SSRSH + L + H ++ + +S
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE------------IS 292
Query: 328 VKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLT 385
V + L L ES KT T R E IN+SL L VI L + K H+PYR+SKLT
Sbjct: 293 VGSINLVDLAGSESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLT 348
Query: 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 438
LL SL G+ + V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 349 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 402
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 177/354 (50%), Gaps = 35/354 (9%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 54 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 113 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327
H + + +R S N SSRSH + L + H ++ + +S
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE------------IS 278
Query: 328 VKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLT 385
V + L L ES KT T R E IN+SL L VI L + K H+PYR+SKLT
Sbjct: 279 VGSINLVDLAGSESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLT 334
Query: 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 438
LL SL G+ + V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 335 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 388
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 175/349 (50%), Gaps = 42/349 (12%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED Q V G++E
Sbjct: 173 RDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQE 230
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGVIFSQ 319
+V S + I G R G N SSRSH F +++ + HG
Sbjct: 231 HLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGK--------- 281
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPY 379
F V A + ++S + R EG+ INKSLL L I L + KA H P+
Sbjct: 282 -----FSLVDLAGNERGADTSSADRQ--TRMEGAEINKSLLALKECIRALGQNKA-HTPF 333
Query: 380 RDSKLTRLLQSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
R+SKLT++L+ S G + +I T++P SS E T NTL++A R K +
Sbjct: 334 RESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 174/349 (49%), Gaps = 42/349 (12%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED+ Q V G++E
Sbjct: 121 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQE 178
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGVIFSQ 319
+V + I G R G N SSRSH F +++ + HG
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK--------- 229
Query: 320 LVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPY 379
F V A + ++S + R EG+ INKSLL L I L + KA H P+
Sbjct: 230 -----FSLVDLAGNERGADTSSADRQ--TRMEGAEINKSLLALKECIRALGQNKA-HTPF 281
Query: 380 RDSKLTRLLQSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427
R+SKLT++L+ S G + +I ++P SS E T NTL++A R K +
Sbjct: 282 RESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 176/354 (49%), Gaps = 35/354 (9%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327
H + + +R S N SSRSH + L + H ++ + +S
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE------------IS 281
Query: 328 VKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLT 385
V + L L ES KT T R E I +SL L VI L + K H+PYR+SKLT
Sbjct: 282 VGSINLVDLAGSESPKTST---RMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLT 337
Query: 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 438
LL SL G+ + V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 391
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 169/337 (50%), Gaps = 34/337 (10%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG + SGKT+TM G S G+IP + +F I
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327
H + + +R S N SSRSH + L + H ++ + +S
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE------------IS 281
Query: 328 VKTAYLFQLY--ESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLT 385
V + L L ES KT T R E IN+SL L VI L + K H+PYR+SKLT
Sbjct: 282 VGSINLVDLAGSESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLT 337
Query: 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFAS 422
LL SL G+ + V+P +E+ +L+FA+
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 175/359 (48%), Gaps = 45/359 (12%)
Query: 89 AEPLDAPQRSGDSISVTIRFRPLSEREFQRGD-EIAWYADGDKIVRNE---------YNP 138
A+P+D + I V +R RPL+++E Q D ++ D ++ +E Y
Sbjct: 83 ADPIDEHR-----ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLE 137
Query: 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN-- 196
+ FD F A ++ VY ARP+V+ E T FAYG T SGKTHTM GD +
Sbjct: 138 NQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK 197
Query: 197 ----SPGIIPLAIKDVFSIIQDTPGREFLLRV--SYLEIYNEVINDLLDPTGQNLRVRED 250
S GI LA +DVF +++ ++ L+V ++ EIY+ + DLL+ + LRV ED
Sbjct: 198 NQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLED 256
Query: 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD-- 307
Q V G++E V L I G R G + N SSRSH +F +++
Sbjct: 257 GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL 316
Query: 308 HGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIG 367
HG ++ + + S+ +T R EG+ INKSLL L I
Sbjct: 317 HG------------KFSLIDLAGNERGADTSSADRQT----RLEGAEINKSLLALKECIR 360
Query: 368 KLSEGKASHVPYRDSKLTRLLQSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAK 425
L K H P+R SKLT++L+ S G + +I T++P +S E T NTL++A+R K
Sbjct: 361 ALGRNKP-HTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 156/298 (52%), Gaps = 26/298 (8%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGII 201
+ FD++F ++ V++ ++ +++ +++G N VFAYG T SGKT TM N G+I
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN--GMI 488
Query: 202 PLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDP-----TGQNLRVREDAQGT 254
PL++K +F+ I++ G + +R ++EIYNE I DLL+P T ++ + A T
Sbjct: 489 PLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKT 548
Query: 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314
V + + SP A++ + + R + N SSRSH+IF + ++
Sbjct: 549 TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG--------- 599
Query: 315 VIFSQLVRWFFLSVKTAYLFQLYESSKTETT---GLRRKEGSYINKSLLTLGTVIGKLSE 371
++ L + S T L L S + + G R KE INKSL LG VI L+
Sbjct: 600 --YNSLTK--ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL 655
Query: 372 GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEI 429
SHVPYR+SKLT LL+ SL G+ + ++P + + ET N+L+FA++ I
Sbjct: 656 KDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 158/312 (50%), Gaps = 44/312 (14%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM--HGDQNSPG 199
+ FD++F + E++ + +++++++G N +FAYG T SGKT+TM GD G
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD----G 130
Query: 200 IIPLAIKDVFSIIQDTPGREFLLRVS--YLEIYNEVINDLL---DPTGQN---------- 244
I+P I +FS I R + +VS ++EIYNE I DLL P+ +N
Sbjct: 131 IVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHE 190
Query: 245 LRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIE 304
+R ++ + TY+ I V+ S + + R S N SSRSH+IF + +E
Sbjct: 191 IRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE 250
Query: 305 SSDHG--DEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTETT---GLRRKEGSYINKSL 359
+ G ++ G++ L L S + ++ G R +E INKSL
Sbjct: 251 GKNEGTGEKSQGIL---------------NLVDLAGSERLNSSMVVGERLRETQSINKSL 295
Query: 360 LTLGTVIGKLS--EGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 417
LG VI L+ +G+ H+P+R+SKLT LLQ SL G + ++PA+ + ET N+
Sbjct: 296 SCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINS 355
Query: 418 LKFASRAKRVEI 429
L+FAS+ ++
Sbjct: 356 LRFASKVNNTKM 367
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 157/319 (49%), Gaps = 54/319 (16%)
Query: 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH----G 193
P ++FDRVF P + EV++ A +V++A++G +FAYG T SGKT TM G
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 194 DQNSPGIIPLAIKDVFSIIQDTPGR--EFLLRVSYLEIYNEVINDLL-----DPTGQNLR 246
D G+IP A++ +FS+ Q+ G+ + SY+EIYNE + DLL G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 247 VREDAQGT---------YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
+R G+ YV E+ V AL +A ++R V N SSRSH+
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEV----DALLHLA--RQNRAVARTAQNERSSRSHS 253
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTET--TGL-------- 347
+F L I S +H ++ L + + +E GL
Sbjct: 254 VFQLQI-SGEHSSR---------------GLQCGAPLSLVDLAGSERLDPGLALGPGERE 297
Query: 348 RRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 407
R +E IN SL TLG VI LS K SHVPYR+SKLT LLQ+SL G + + ++P
Sbjct: 298 RLRETQAINSSLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPL 356
Query: 408 SSSMEETHNTLKFASRAKR 426
++ E+ N+L+FAS+ +
Sbjct: 357 EENVSESLNSLRFASKVNQ 375
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 148/311 (47%), Gaps = 42/311 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM--HGDQNSPG 199
+ FD +F P ++E+++ R +V+++++G N +FAYG T SGKT+TM GD G
Sbjct: 55 FQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----G 109
Query: 200 IIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLL-------------DPTGQN 244
+IP+ + +F + G + + Y+EIYNE I DLL D +
Sbjct: 110 MIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHD 169
Query: 245 LRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIE 304
+R + QGTY+ + + S + + + R + N SSRSH++F + I
Sbjct: 170 IRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229
Query: 305 SSD-HGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSKTET---TGLRRKEGSYINKSLL 360
+ H E S L L S + + TG R +E INKSL
Sbjct: 230 GRNLHTGE--------------TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLS 275
Query: 361 TLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 418
LG VI L+ A ++P+R+SKLT LLQ SL G + + P + + ET N+L
Sbjct: 276 CLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSL 335
Query: 419 KFASRAKRVEI 429
+FAS+ +I
Sbjct: 336 RFASKVNSTKI 346
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 151/321 (47%), Gaps = 56/321 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S++ ++ G R +E
Sbjct: 220 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQN 266
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
INKSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 267 INKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 326
Query: 413 ETHNTLKFASRAKRVEIYASR 433
ET N+L+FAS+ + + +
Sbjct: 327 ETLNSLRFASKVNSTRLVSRK 347
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 147/312 (47%), Gaps = 56/312 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----G 164
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------VR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 225 HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 275
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S + ++ G R +E
Sbjct: 276 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQN 322
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
INKSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 323 INKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 382
Query: 413 ETHNTLKFASRA 424
ET N+L+FAS+
Sbjct: 383 ETLNSLRFASKV 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 150/321 (46%), Gaps = 56/321 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 119
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 230
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S + ++ G R +E
Sbjct: 231 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQN 277
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
INKSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 278 INKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 337
Query: 413 ETHNTLKFASRAKRVEIYASR 433
ET N+L+FAS+ + + +
Sbjct: 338 ETLNSLRFASKVNSTRLVSRK 358
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 150/321 (46%), Gaps = 56/321 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 107
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 108 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 167
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 168 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 218
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S + ++ G R +E
Sbjct: 219 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQN 265
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
INKSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 266 INKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 325
Query: 413 ETHNTLKFASRAKRVEIYASR 433
ET N+L+FAS+ + + +
Sbjct: 326 ETLNSLRFASKVNSTRLVSRK 346
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 163/345 (47%), Gaps = 38/345 (11%)
Query: 102 ISVTIRFRPLSEREFQRGD--------EIAWYADGD--KIVRNEYNPATAYAFDRVFGPH 151
I V +R RPLSE E ++ D Y D K+ +Y + D+VF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 152 ANSQEVYDVAARPVVKAAME-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAI 205
++ VY+ +P++ E G + FAYG T SGKT+TM G Q ++PGI A
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 206 KDVFSIIQ-----DTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIK 260
D+F+ + +T G + +S+ EIY + DLL + + V+ +K
Sbjct: 122 GDIFTFLNIYDKDNTKG----IFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLK 177
Query: 261 EEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQL 320
VL+ + + G R +G N+ N SSRSH I + ++ + + F L
Sbjct: 178 ILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDL 237
Query: 321 VRWFFLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYR 380
S + A + ++ +T+T +G+ IN+SLL L I + K +H+P+R
Sbjct: 238 AG----SERGAD--TVSQNKQTQT------DGANINRSLLALKECIRAMDSDK-NHIPFR 284
Query: 381 DSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425
DS+LT++L+ G +I ++P S E+T NTL+++SR K
Sbjct: 285 DSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 56/321 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S + ++ G R +E
Sbjct: 220 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQN 266
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
I KSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 267 IKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 326
Query: 413 ETHNTLKFASRAKRVEIYASR 433
ET N+L+FAS+ + + +
Sbjct: 327 ETLNSLRFASKVNSTRLVSRK 347
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 56/321 (17%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SS SH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSASHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSY 354
IF + + S+ + S T L L S + ++ G R +E
Sbjct: 220 IFIIHLSGSN-------------AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQN 266
Query: 355 INKSLLTLGTVIGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 412
INKSL LG VI L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS +
Sbjct: 267 INKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 326
Query: 413 ETHNTLKFASRAKRVEIYASR 433
ET N+L+FAS+ + + +
Sbjct: 327 ETLNSLRFASKVNSTRLVSRK 347
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 148/320 (46%), Gaps = 47/320 (14%)
Query: 125 YADGDKIV--RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGV 182
++DG ++ +NE++ FD F + E+Y P+V +EG T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQ 103
Query: 183 TSSGKTHTMHGDQNSPG--------IIPLAIKDVFSII---QDTPGREFLLRVSYLEIYN 231
T +GK+++M PG I+P A+ D+F + Q+ + S++EIYN
Sbjct: 104 TGTGKSYSM--GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 232 EVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLL 291
E DLL T V Q + + L H L G +R V N N
Sbjct: 162 EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSN 216
Query: 292 SSRSHTIFTLMIESSDHGDEYDGVIF--SQLVRWFFLSVKTAYLFQLYESSKTETTGLRR 349
SSRSH I T+ ++S H + V S+ VR +T G+ R
Sbjct: 217 SSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVR------------------RTGHEGVAR 258
Query: 350 KEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 409
+EG IN LL++ V+ ++ G +PYRDS LT +LQ+SL+ +++ + ++P
Sbjct: 259 QEGVNINLGLLSINKVVMSMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317
Query: 410 SMEETHNTLKFASRAKRVEI 429
+ ET +TL+F + AK++ +
Sbjct: 318 DLSETLSTLRFGTSAKKLRL 337
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 47/316 (14%)
Query: 125 YADGDKIV--RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGV 182
++DG ++ +NE++ FD F + E+Y P+V +EG T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQ 103
Query: 183 TSSGKTHTMHGDQNSPG--------IIPLAIKDVFSII---QDTPGREFLLRVSYLEIYN 231
T +GK+++M PG I+P A+ D+F + Q+ + S++EIYN
Sbjct: 104 TGTGKSYSM--GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 232 EVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLL 291
E DLL T V Q + + L H L G +R V N N
Sbjct: 162 EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSN 216
Query: 292 SSRSHTIFTLMIESSDHGDEYDGVIF--SQLVRWFFLSVKTAYLFQLYESSKTETTGLRR 349
SSRSH I T+ ++S H + V S+ VR +T G+ R
Sbjct: 217 SSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVR------------------RTGHEGVAR 258
Query: 350 KEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 409
+EG IN LL++ V+ ++ G +PYRDS LT +LQ+SL+ +++ + ++P
Sbjct: 259 QEGVNINLGLLSINKVVMSMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317
Query: 410 SMEETHNTLKFASRAK 425
+ ET +TL+F + AK
Sbjct: 318 DLSETLSTLRFGTSAK 333
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%)
Query: 355 INKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 414
INKSL LG VI L+EG +HVPYRDSK+TR+LQ SL G+ +++ +P+ + ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 415 HNTLKFASRAKRVEIYASRN 434
+TL F RAK ++ S N
Sbjct: 64 KSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 356 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 415
NKSL LG VI L+EG +HVPYRDSK+TR+LQ SL G+ +++ +P+ + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 416 NTLKFASRAKRVEIYASRN 434
+TL F RAK ++ S N
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 1059 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104
CKVC + + + +PC H +CK C+ + +CPICR+ I + F
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap
Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1098
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 67
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1098
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1098
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1059 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104
CKVC + + + +PC H +C+ C+ + +CPICR I + F
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1059 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104
CKVC + + + +PC H +C C+ CPICR + R+ F
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
Length = 79
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKI 1097
+C VC E + PC H C+SC+ CP+CR+++
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRV 59
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRL 1101
NS C VC +LLPCRH CLC C +CP+CR + +
Sbjct: 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESF 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC A E CP CR +I
Sbjct: 27 QLCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC A E CP CR +I
Sbjct: 340 LCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 25 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 1050 GNGDPNSHM--CKVCFESPTAAILLPCRH-FC-LC-KSCSLACSECPICRTKISD 1099
GN P+ + C +C ++ + LPC+H FC LC K S C +CR +I +
Sbjct: 7 GNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 28 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1097
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1035 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1088
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 32 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 87
Query: 1089 -ECPICRTKISDRLFAFT 1105
ECPICR I + ++
Sbjct: 88 IECPICRKDIKSKTYSLV 105
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
Length = 149
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1035 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1088
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 43 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 98
Query: 1089 -ECPICRTKISDRLFAFT 1105
ECPICR I + ++
Sbjct: 99 IECPICRKDIKSKTYSLV 116
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1035 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1088
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 32 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 87
Query: 1089 -ECPICRTKISDRLFAFT 1105
ECPICR I + ++
Sbjct: 88 IECPICRKDIKSKTYSLV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,965,804
Number of Sequences: 62578
Number of extensions: 1147526
Number of successful extensions: 2916
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2612
Number of HSP's gapped (non-prelim): 119
length of query: 1105
length of database: 14,973,337
effective HSP length: 109
effective length of query: 996
effective length of database: 8,152,335
effective search space: 8119725660
effective search space used: 8119725660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)