Query 001297
Match_columns 1105
No_of_seqs 764 out of 3406
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1E-84 2.2E-89 787.2 68.2 398 96-510 45-469 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 5.9E-87 1.3E-91 789.3 44.6 377 99-487 3-414 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 2.3E-86 5.1E-91 774.5 25.3 352 99-462 4-370 (574)
4 PLN03188 kinesin-12 family pro 100.0 1.1E-79 2.4E-84 748.6 75.7 355 91-464 89-469 (1320)
5 KOG0242 Kinesin-like protein [ 100.0 8.6E-84 1.9E-88 781.6 34.9 353 99-465 5-369 (675)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 1.5E-81 3.2E-86 713.6 29.6 340 98-450 5-354 (607)
7 KOG0241 Kinesin-like protein [ 100.0 1.2E-79 2.7E-84 711.5 31.9 350 99-460 3-383 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 3.3E-77 7.1E-82 682.5 31.7 316 100-427 1-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 4.2E-76 9.1E-81 673.6 32.5 316 101-427 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 4.1E-74 8.9E-79 658.6 31.4 310 100-425 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.6E-74 2.1E-78 659.1 33.0 324 100-434 1-356 (356)
12 cd01374 KISc_CENP_E Kinesin mo 100.0 1.9E-72 4.1E-77 640.1 33.3 315 101-427 1-321 (321)
13 cd01367 KISc_KIF2_like Kinesin 100.0 1.8E-72 3.9E-77 639.9 30.0 307 100-425 1-322 (322)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 4.5E-72 9.7E-77 639.7 31.9 317 100-427 1-333 (333)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.4E-71 3E-76 640.7 31.9 323 100-435 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.6E-71 7.7E-76 630.9 31.7 315 100-427 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 6.8E-71 1.5E-75 626.5 31.7 307 101-425 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2.7E-70 5.8E-75 627.7 31.0 314 101-428 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3E-70 6.6E-75 624.6 30.8 310 101-425 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 2.3E-68 5E-73 608.9 32.5 316 99-429 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 6E-69 1.3E-73 649.5 21.7 324 96-434 310-647 (670)
22 smart00129 KISc Kinesin motor, 100.0 5.1E-67 1.1E-71 599.4 32.9 323 101-434 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 1.3E-65 2.7E-70 586.2 32.5 313 101-425 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 9.7E-67 2.1E-71 597.1 20.3 310 107-427 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 7.8E-66 1.7E-70 582.3 25.1 316 98-431 206-545 (676)
26 KOG0244 Kinesin-like protein [ 100.0 4E-64 8.7E-69 599.7 39.0 337 108-461 1-350 (913)
27 KOG0247 Kinesin-like protein [ 100.0 1.3E-64 2.7E-69 587.3 30.8 326 95-433 26-442 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.2E-59 4.8E-64 564.4 25.9 342 97-457 19-366 (568)
29 cd01363 Motor_domain Myosin an 100.0 9.8E-46 2.1E-50 389.4 15.4 175 157-406 8-186 (186)
30 KOG0978 E3 ubiquitin ligase in 99.6 3.9E-13 8.4E-18 161.7 31.4 155 689-843 377-558 (698)
31 KOG0612 Rho-associated, coiled 99.4 1E-11 2.2E-16 153.4 21.0 276 647-962 506-811 (1317)
32 KOG4265 Predicted E3 ubiquitin 99.2 7.7E-13 1.7E-17 146.9 -1.7 80 1025-1104 255-342 (349)
33 KOG4172 Predicted E3 ubiquitin 99.1 3.4E-12 7.4E-17 103.5 -3.6 49 1057-1105 8-61 (62)
34 KOG4275 Predicted E3 ubiquitin 98.9 2.3E-10 4.9E-15 122.8 0.0 50 1056-1105 300-349 (350)
35 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.2E-09 2.7E-14 90.5 1.4 44 1057-1100 3-50 (50)
36 KOG1571 Predicted E3 ubiquitin 98.7 2.6E-09 5.6E-14 119.2 1.1 54 1052-1105 301-354 (355)
37 KOG1100 Predicted E3 ubiquitin 98.4 1.2E-07 2.5E-12 101.6 2.6 47 1058-1104 160-206 (207)
38 PF07888 CALCOCO1: Calcium bin 98.4 0.00074 1.6E-08 81.0 34.4 26 648-673 170-195 (546)
39 TIGR02169 SMC_prok_A chromosom 98.2 0.0027 5.8E-08 85.0 38.2 14 178-191 27-40 (1164)
40 KOG0823 Predicted E3 ubiquitin 98.2 8E-07 1.7E-11 94.3 2.8 51 1053-1104 44-103 (230)
41 TIGR02168 SMC_prok_B chromosom 98.1 0.0055 1.2E-07 82.0 38.7 16 176-191 25-40 (1179)
42 TIGR02168 SMC_prok_B chromosom 98.1 0.0027 5.8E-08 85.0 35.2 38 812-849 827-864 (1179)
43 TIGR02169 SMC_prok_A chromosom 98.1 0.0061 1.3E-07 81.6 37.3 12 379-390 55-66 (1164)
44 PF07888 CALCOCO1: Calcium bin 98.1 0.002 4.4E-08 77.4 28.6 77 652-741 160-236 (546)
45 COG1196 Smc Chromosome segrega 98.0 0.0069 1.5E-07 81.2 36.4 52 909-960 949-1007(1163)
46 COG1196 Smc Chromosome segrega 97.9 0.019 4.2E-07 77.0 37.7 23 924-946 978-1000(1163)
47 PLN03208 E3 ubiquitin-protein 97.9 2.7E-06 5.8E-11 89.0 1.2 49 1055-1104 17-87 (193)
48 KOG0161 Myosin class II heavy 97.8 0.026 5.5E-07 76.9 35.6 68 759-826 963-1030(1930)
49 KOG0320 Predicted E3 ubiquitin 97.8 4.6E-06 1E-10 85.0 0.9 47 1057-1104 132-186 (187)
50 KOG4674 Uncharacterized conser 97.8 0.019 4.1E-07 76.9 32.7 233 613-853 1063-1337(1822)
51 KOG0971 Microtubule-associated 97.8 0.036 7.9E-07 68.6 32.4 12 615-626 229-240 (1243)
52 KOG0996 Structural maintenance 97.8 0.31 6.8E-06 62.7 41.9 202 647-856 818-1039(1293)
53 KOG0161 Myosin class II heavy 97.8 0.028 6.2E-07 76.5 34.0 49 913-961 1643-1691(1930)
54 PRK02224 chromosome segregatio 97.8 0.051 1.1E-06 71.1 36.2 89 647-741 347-442 (880)
55 KOG0317 Predicted E3 ubiquitin 97.7 1.1E-05 2.3E-10 88.2 1.7 45 1055-1100 238-286 (293)
56 TIGR00606 rad50 rad50. This fa 97.7 0.059 1.3E-06 73.3 37.5 114 610-732 758-871 (1311)
57 TIGR00606 rad50 rad50. This fa 97.7 0.027 5.9E-07 76.5 33.4 92 647-738 749-849 (1311)
58 KOG0976 Rho/Rac1-interacting s 97.7 0.065 1.4E-06 65.5 31.9 57 773-829 255-311 (1265)
59 COG4372 Uncharacterized protei 97.7 0.026 5.7E-07 64.1 27.0 211 650-956 75-285 (499)
60 KOG4673 Transcription factor T 97.7 0.048 1E-06 65.8 30.5 71 787-865 494-568 (961)
61 PRK02224 chromosome segregatio 97.6 0.033 7.2E-07 72.8 32.1 15 177-191 26-40 (880)
62 PF09730 BicD: Microtubule-ass 97.6 0.15 3.3E-06 63.9 35.5 198 609-853 264-463 (717)
63 KOG0976 Rho/Rac1-interacting s 97.6 0.09 2E-06 64.4 32.0 114 609-728 37-165 (1265)
64 PRK11637 AmiB activator; Provi 97.6 0.011 2.5E-07 70.7 25.5 143 646-802 44-198 (428)
65 PHA02929 N1R/p28-like protein; 97.6 3.3E-05 7.1E-10 84.2 3.3 47 1056-1103 174-232 (238)
66 PF10174 Cast: RIM-binding pro 97.6 0.23 5E-06 63.1 37.3 230 610-853 114-366 (775)
67 KOG0933 Structural maintenance 97.6 0.15 3.2E-06 64.4 34.4 21 653-673 712-732 (1174)
68 PF14634 zf-RING_5: zinc-RING 97.6 3.3E-05 7.1E-10 62.4 1.9 37 1058-1095 1-44 (44)
69 KOG0933 Structural maintenance 97.6 0.12 2.6E-06 65.2 32.9 61 896-956 959-1020(1174)
70 PRK11637 AmiB activator; Provi 97.6 0.048 1E-06 65.4 29.5 77 652-741 43-119 (428)
71 PF14662 CCDC155: Coiled-coil 97.5 0.063 1.4E-06 56.4 25.6 119 696-846 7-125 (193)
72 PF13923 zf-C3HC4_2: Zinc fing 97.5 3.1E-05 6.7E-10 60.8 1.0 34 1059-1093 1-39 (39)
73 COG1579 Zn-ribbon protein, pos 97.5 0.013 2.8E-07 64.1 20.7 54 897-950 91-144 (239)
74 KOG2164 Predicted E3 ubiquitin 97.5 4E-05 8.8E-10 89.6 1.3 43 1056-1099 186-237 (513)
75 KOG0977 Nuclear envelope prote 97.4 0.18 3.9E-06 61.2 31.2 57 773-829 154-217 (546)
76 PF10174 Cast: RIM-binding pro 97.4 0.24 5.1E-06 63.0 33.5 87 649-741 287-373 (775)
77 KOG0971 Microtubule-associated 97.4 0.11 2.5E-06 64.4 29.1 27 930-956 570-596 (1243)
78 PF04849 HAP1_N: HAP1 N-termin 97.3 0.11 2.4E-06 58.7 26.4 188 711-946 97-299 (306)
79 PF08826 DMPK_coil: DMPK coile 97.3 0.00052 1.1E-08 59.1 6.1 46 909-961 1-56 (61)
80 PF15070 GOLGA2L5: Putative go 97.3 0.59 1.3E-05 58.3 34.7 66 608-673 34-104 (617)
81 KOG4673 Transcription factor T 97.3 0.5 1.1E-05 57.5 31.9 79 777-858 576-669 (961)
82 PF00038 Filament: Intermediat 97.3 0.31 6.7E-06 55.8 30.0 55 687-741 51-112 (312)
83 KOG0994 Extracellular matrix g 97.2 0.79 1.7E-05 58.7 34.2 44 796-839 1599-1642(1758)
84 PF13639 zf-RING_2: Ring finge 97.2 9.9E-05 2.1E-09 59.4 0.8 36 1058-1094 2-44 (44)
85 PF12128 DUF3584: Protein of u 97.2 0.8 1.7E-05 62.0 37.8 31 809-839 504-534 (1201)
86 PRK03918 chromosome segregatio 97.2 1.2 2.5E-05 58.5 38.5 14 178-191 27-40 (880)
87 PF15070 GOLGA2L5: Putative go 97.2 0.77 1.7E-05 57.4 33.9 92 651-742 45-139 (617)
88 PRK04863 mukB cell division pr 97.2 0.57 1.2E-05 63.9 35.1 52 897-948 553-604 (1486)
89 TIGR00599 rad18 DNA repair pro 97.2 0.00014 3.1E-09 84.6 1.5 43 1056-1099 26-72 (397)
90 PHA02562 46 endonuclease subun 97.2 0.15 3.3E-06 63.1 28.2 30 712-741 214-243 (562)
91 PHA02926 zinc finger-like prot 97.2 0.00011 2.4E-09 77.7 0.5 45 1057-1102 171-234 (242)
92 KOG0995 Centromere-associated 97.1 0.53 1.1E-05 56.8 30.4 156 613-827 224-385 (581)
93 PRK04863 mukB cell division pr 97.1 0.4 8.6E-06 65.4 33.1 149 691-840 370-530 (1486)
94 KOG0977 Nuclear envelope prote 97.1 0.094 2E-06 63.5 24.4 155 653-822 60-214 (546)
95 PF09726 Macoilin: Transmembra 97.1 0.077 1.7E-06 66.9 24.5 33 821-853 543-575 (697)
96 PF00038 Filament: Intermediat 97.1 0.86 1.9E-05 52.2 35.0 57 686-742 71-134 (312)
97 PF12128 DUF3584: Protein of u 97.1 0.63 1.4E-05 63.0 34.4 25 649-673 366-390 (1201)
98 PRK04778 septation ring format 97.0 0.94 2E-05 56.5 33.2 152 785-958 352-504 (569)
99 COG5574 PEX10 RING-finger-cont 97.0 0.0002 4.3E-09 77.6 0.9 42 1056-1098 215-262 (271)
100 KOG0250 DNA repair protein RAD 97.0 0.079 1.7E-06 67.7 23.2 174 649-842 281-462 (1074)
101 PF14447 Prok-RING_4: Prokaryo 97.0 0.00031 6.8E-09 58.6 1.6 41 1058-1099 9-51 (55)
102 PHA02562 46 endonuclease subun 97.0 0.094 2E-06 64.9 24.0 17 175-191 28-44 (562)
103 smart00184 RING Ring finger. E 97.0 0.00045 9.7E-09 52.7 2.3 34 1059-1093 1-39 (39)
104 PF00261 Tropomyosin: Tropomyo 97.0 0.23 4.9E-06 54.9 24.1 148 692-853 3-150 (237)
105 cd00162 RING RING-finger (Real 97.0 0.00054 1.2E-08 54.2 2.6 39 1058-1097 1-45 (45)
106 KOG0612 Rho-associated, coiled 97.0 0.51 1.1E-05 61.1 29.6 155 689-843 493-650 (1317)
107 COG5432 RAD18 RING-finger-cont 96.9 0.00032 6.9E-09 76.2 1.2 41 1058-1099 27-71 (391)
108 COG5059 KIP1 Kinesin-like prot 96.9 1.9E-05 4.2E-10 97.0 -9.3 247 99-370 304-566 (568)
109 KOG0287 Postreplication repair 96.9 0.00025 5.5E-09 78.5 0.4 41 1058-1099 25-69 (442)
110 KOG0996 Structural maintenance 96.9 1.2 2.6E-05 57.7 31.6 118 688-829 403-520 (1293)
111 KOG4643 Uncharacterized coiled 96.9 1.1 2.4E-05 57.0 30.6 188 650-851 199-398 (1195)
112 PRK03918 chromosome segregatio 96.9 1.3 2.9E-05 57.9 34.2 19 610-628 158-176 (880)
113 KOG0963 Transcription factor/C 96.8 0.89 1.9E-05 55.4 29.0 55 689-746 216-270 (629)
114 PF09726 Macoilin: Transmembra 96.8 0.31 6.7E-06 61.6 26.4 72 775-853 588-659 (697)
115 PF05667 DUF812: Protein of un 96.8 0.54 1.2E-05 58.4 27.9 106 688-799 424-530 (594)
116 KOG1785 Tyrosine kinase negati 96.8 0.00038 8.3E-09 78.4 0.6 43 1058-1101 371-419 (563)
117 KOG0250 DNA repair protein RAD 96.8 1.2 2.5E-05 57.7 30.6 30 712-741 275-304 (1074)
118 PF15227 zf-C3HC4_4: zinc fing 96.8 0.00061 1.3E-08 54.5 1.4 34 1059-1093 1-42 (42)
119 PF09787 Golgin_A5: Golgin sub 96.7 2.5 5.4E-05 52.1 34.1 153 609-799 108-260 (511)
120 PF00097 zf-C3HC4: Zinc finger 96.7 0.00057 1.2E-08 54.0 1.0 34 1059-1093 1-41 (41)
121 KOG0980 Actin-binding protein 96.7 0.75 1.6E-05 57.8 27.6 75 763-851 413-487 (980)
122 KOG0999 Microtubule-associated 96.7 1 2.2E-05 53.8 27.3 58 685-743 10-75 (772)
123 PF00261 Tropomyosin: Tropomyo 96.7 1.4 3.1E-05 48.7 27.8 30 821-850 132-161 (237)
124 PRK01156 chromosome segregatio 96.7 4.2 9.1E-05 53.6 37.5 16 176-191 25-40 (895)
125 PRK09039 hypothetical protein; 96.6 0.24 5.2E-06 57.7 21.9 75 757-831 113-187 (343)
126 KOG4674 Uncharacterized conser 96.6 5.9 0.00013 54.4 36.6 124 710-840 121-248 (1822)
127 KOG0994 Extracellular matrix g 96.6 4.2 9.2E-05 52.5 33.6 39 919-957 1706-1744(1758)
128 smart00504 Ubox Modified RING 96.6 0.0012 2.6E-08 57.0 2.0 40 1058-1098 3-46 (63)
129 KOG4692 Predicted E3 ubiquitin 96.5 0.0014 3E-08 73.0 2.8 46 1054-1100 420-469 (489)
130 COG4942 Membrane-bound metallo 96.5 1.5 3.3E-05 51.7 27.5 51 897-947 198-248 (420)
131 PF05483 SCP-1: Synaptonemal c 96.5 3.4 7.3E-05 50.9 30.9 67 787-853 498-564 (786)
132 PRK11281 hypothetical protein; 96.5 5.2 0.00011 53.4 35.2 89 653-741 84-179 (1113)
133 KOG0964 Structural maintenance 96.5 0.98 2.1E-05 57.3 26.5 88 654-741 228-316 (1200)
134 PF05701 WEMBL: Weak chloropla 96.5 1.4 3E-05 54.4 28.4 33 930-962 288-320 (522)
135 KOG0249 LAR-interacting protei 96.5 0.48 1E-05 58.0 23.2 215 649-869 56-280 (916)
136 PRK10929 putative mechanosensi 96.4 5.6 0.00012 53.0 34.4 42 817-858 273-314 (1109)
137 COG4942 Membrane-bound metallo 96.3 1.4 3E-05 52.1 25.5 48 617-675 38-85 (420)
138 PF13445 zf-RING_UBOX: RING-ty 96.3 0.0014 3E-08 52.7 0.6 27 1059-1087 1-31 (43)
139 KOG4643 Uncharacterized coiled 96.3 5.8 0.00013 50.9 33.3 61 610-672 264-324 (1195)
140 COG5540 RING-finger-containing 96.2 0.0023 5E-08 70.3 2.2 41 1057-1098 324-372 (374)
141 COG5236 Uncharacterized conser 96.2 0.0028 6E-08 70.5 2.5 48 1053-1101 58-111 (493)
142 PF09730 BicD: Microtubule-ass 96.1 6.3 0.00014 50.0 34.8 164 771-950 269-460 (717)
143 PF05701 WEMBL: Weak chloropla 96.0 6 0.00013 48.9 34.2 129 687-829 278-406 (522)
144 PRK09039 hypothetical protein; 96.0 0.41 9E-06 55.8 19.5 159 653-839 43-203 (343)
145 PF14835 zf-RING_6: zf-RING of 96.0 0.0037 8E-08 54.1 1.9 39 1058-1097 9-50 (65)
146 PF05667 DUF812: Protein of un 96.0 0.96 2.1E-05 56.3 23.4 61 782-842 420-480 (594)
147 COG5185 HEC1 Protein involved 95.9 2 4.3E-05 50.6 23.7 85 712-821 331-415 (622)
148 PF04849 HAP1_N: HAP1 N-termin 95.9 2.3 5E-05 48.3 23.6 166 612-828 106-288 (306)
149 COG4372 Uncharacterized protei 95.9 4.9 0.00011 46.4 28.5 117 608-741 72-188 (499)
150 PF06818 Fez1: Fez1; InterPro 95.8 1.9 4.1E-05 46.2 21.4 97 610-737 10-106 (202)
151 KOG2177 Predicted E3 ubiquitin 95.8 0.0027 5.9E-08 70.7 0.2 39 1056-1095 13-55 (386)
152 KOG0018 Structural maintenance 95.7 10 0.00022 49.3 31.0 40 811-850 858-897 (1141)
153 KOG1813 Predicted E3 ubiquitin 95.7 0.0035 7.7E-08 69.0 0.9 47 1054-1101 239-289 (313)
154 KOG0946 ER-Golgi vesicle-tethe 95.7 2.9 6.4E-05 52.3 25.2 30 712-741 731-760 (970)
155 PF10481 CENP-F_N: Cenp-F N-te 95.7 0.37 8E-06 53.0 15.8 84 763-846 49-132 (307)
156 PF14662 CCDC155: Coiled-coil 95.7 2.3 4.9E-05 45.1 21.0 56 775-851 89-144 (193)
157 COG5152 Uncharacterized conser 95.6 0.0033 7.2E-08 65.1 0.0 49 1053-1102 193-245 (259)
158 KOG0980 Actin-binding protein 95.6 10 0.00022 48.2 34.0 66 761-826 446-511 (980)
159 PF05622 HOOK: HOOK protein; 95.6 0.0034 7.3E-08 79.9 0.0 93 646-741 329-421 (713)
160 COG1579 Zn-ribbon protein, pos 95.5 1.2 2.6E-05 49.0 19.1 53 689-741 30-82 (239)
161 KOG0964 Structural maintenance 95.4 7.2 0.00016 50.0 27.2 55 896-950 419-473 (1200)
162 PF06818 Fez1: Fez1; InterPro 95.3 4.2 9.1E-05 43.6 21.9 51 691-741 11-61 (202)
163 COG5243 HRD1 HRD ubiquitin lig 95.2 0.0085 1.8E-07 67.5 1.8 44 1053-1097 284-344 (491)
164 TIGR03007 pepcterm_ChnLen poly 95.2 5.5 0.00012 48.8 26.2 176 611-800 162-350 (498)
165 PF06160 EzrA: Septation ring 95.1 12 0.00025 46.9 28.9 207 719-949 272-491 (560)
166 KOG4687 Uncharacterized coiled 95.1 1.3 2.9E-05 48.6 17.6 195 725-946 9-204 (389)
167 KOG0963 Transcription factor/C 95.0 13 0.00028 45.8 30.5 48 898-946 306-353 (629)
168 PF12678 zf-rbx1: RING-H2 zinc 95.0 0.014 3.1E-07 52.4 2.1 36 1058-1094 21-73 (73)
169 PF13514 AAA_27: AAA domain 94.8 23 0.00049 48.1 37.1 143 710-853 679-831 (1111)
170 PF05557 MAD: Mitotic checkpoi 94.8 0.0078 1.7E-07 76.8 0.0 59 898-956 346-404 (722)
171 KOG1029 Endocytic adaptor prot 94.6 16 0.00035 45.8 26.7 31 772-802 484-514 (1118)
172 PF14915 CCDC144C: CCDC144C pr 94.6 9.1 0.0002 43.2 23.0 91 710-800 143-233 (305)
173 PF05911 DUF869: Plant protein 94.6 20 0.00044 46.1 30.2 121 690-838 81-205 (769)
174 PF01576 Myosin_tail_1: Myosin 94.5 0.01 2.2E-07 76.8 0.0 229 613-853 35-294 (859)
175 PF13851 GAS: Growth-arrest sp 94.5 5.7 0.00012 42.9 20.8 135 689-854 33-167 (201)
176 PF09789 DUF2353: Uncharacteri 94.5 12 0.00026 43.2 31.6 142 690-850 68-216 (319)
177 PF08614 ATG16: Autophagy prot 94.5 0.43 9.3E-06 51.1 12.3 55 770-845 133-187 (194)
178 KOG0579 Ste20-like serine/thre 94.5 4.3 9.4E-05 49.8 21.2 129 764-922 842-977 (1187)
179 KOG0249 LAR-interacting protei 94.4 6.1 0.00013 49.0 22.5 105 813-950 153-257 (916)
180 TIGR03185 DNA_S_dndD DNA sulfu 94.4 21 0.00045 45.5 34.0 82 648-745 208-289 (650)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.3 2.2 4.8E-05 42.8 16.3 83 650-741 4-89 (132)
182 KOG2113 Predicted RNA binding 94.3 0.034 7.4E-07 61.6 3.3 53 1051-1103 338-392 (394)
183 PF05622 HOOK: HOOK protein; 94.2 0.013 2.7E-07 74.8 0.0 33 770-802 321-353 (713)
184 KOG1029 Endocytic adaptor prot 94.2 21 0.00045 44.9 30.6 16 198-213 44-59 (1118)
185 PF12718 Tropomyosin_1: Tropom 94.2 3.9 8.4E-05 41.8 17.9 94 695-802 5-101 (143)
186 KOG0978 E3 ubiquitin ligase in 94.1 22 0.00048 44.9 30.2 60 1032-1104 631-697 (698)
187 KOG0995 Centromere-associated 94.1 19 0.00041 44.0 36.1 96 612-711 261-360 (581)
188 TIGR02680 conserved hypothetic 94.1 33 0.00072 47.4 31.6 43 622-672 730-772 (1353)
189 PF15619 Lebercilin: Ciliary p 94.1 4.3 9.3E-05 43.6 18.6 29 713-741 120-148 (194)
190 KOG4159 Predicted E3 ubiquitin 94.0 0.028 6.2E-07 65.9 2.2 46 1053-1099 81-130 (398)
191 KOG3039 Uncharacterized conser 94.0 0.21 4.5E-06 54.0 8.3 43 1057-1100 222-272 (303)
192 KOG0802 E3 ubiquitin ligase [P 93.9 0.02 4.4E-07 70.6 0.9 41 1056-1097 291-340 (543)
193 KOG2879 Predicted E3 ubiquitin 93.8 0.038 8.2E-07 60.6 2.6 44 1054-1098 237-287 (298)
194 PF06785 UPF0242: Uncharacteri 93.8 4.7 0.0001 45.7 18.6 63 788-850 99-161 (401)
195 PF00308 Bac_DnaA: Bacterial d 93.8 0.031 6.7E-07 60.9 1.8 50 140-192 3-52 (219)
196 PF15066 CAGE1: Cancer-associa 93.7 12 0.00027 44.4 22.3 109 712-838 325-433 (527)
197 KOG4593 Mitotic checkpoint pro 93.6 25 0.00055 43.9 34.5 147 690-850 363-509 (716)
198 KOG4628 Predicted E3 ubiquitin 93.6 0.034 7.4E-07 63.8 1.9 42 1057-1099 230-279 (348)
199 PRK01156 chromosome segregatio 93.5 35 0.00075 45.1 38.0 88 712-800 417-509 (895)
200 KOG4360 Uncharacterized coiled 93.5 12 0.00026 45.0 22.0 31 711-741 97-127 (596)
201 KOG0946 ER-Golgi vesicle-tethe 93.5 2.5 5.5E-05 52.8 17.2 29 720-748 801-829 (970)
202 PRK10929 putative mechanosensi 93.4 39 0.00085 45.4 33.2 91 651-741 67-160 (1109)
203 PF04564 U-box: U-box domain; 93.4 0.045 9.8E-07 49.2 1.9 44 1055-1099 3-51 (73)
204 PF15254 CCDC14: Coiled-coil d 93.3 19 0.0004 45.5 24.2 81 763-843 458-542 (861)
205 TIGR02680 conserved hypothetic 93.2 49 0.0011 45.8 34.3 17 176-192 26-42 (1353)
206 PRK11281 hypothetical protein; 93.1 43 0.00094 45.1 34.4 42 817-858 293-334 (1113)
207 TIGR01843 type_I_hlyD type I s 93.1 18 0.00039 42.9 24.1 32 710-741 157-188 (423)
208 KOG0962 DNA repair protein RAD 93.1 43 0.00094 45.0 32.3 128 708-853 823-950 (1294)
209 COG0556 UvrB Helicase subunit 93.0 0.11 2.5E-06 61.9 5.0 89 141-234 4-100 (663)
210 PF09789 DUF2353: Uncharacteri 93.0 3.3 7.1E-05 47.6 16.3 167 762-946 11-177 (319)
211 KOG0018 Structural maintenance 92.9 40 0.00087 44.1 29.7 118 684-802 235-352 (1141)
212 KOG0311 Predicted E3 ubiquitin 92.9 0.011 2.5E-07 66.6 -3.2 42 1058-1100 45-92 (381)
213 KOG1937 Uncharacterized conser 92.9 25 0.00055 41.7 25.7 57 782-843 360-416 (521)
214 PF06160 EzrA: Septation ring 92.9 33 0.00071 43.0 33.2 58 788-845 278-335 (560)
215 COG3883 Uncharacterized protei 92.8 3.5 7.6E-05 46.0 15.8 142 769-929 33-182 (265)
216 PF04641 Rtf2: Rtf2 RING-finge 92.8 0.072 1.6E-06 59.7 2.8 46 1054-1100 111-163 (260)
217 COG1340 Uncharacterized archae 92.7 22 0.00047 40.5 26.6 68 761-828 159-226 (294)
218 KOG0979 Structural maintenance 92.6 43 0.00092 43.7 26.7 154 699-853 176-341 (1072)
219 PF10168 Nup88: Nuclear pore c 92.6 4.8 0.0001 51.5 18.9 74 712-788 640-713 (717)
220 COG3883 Uncharacterized protei 92.5 21 0.00046 40.0 21.8 36 767-802 141-176 (265)
221 PF05557 MAD: Mitotic checkpoi 92.5 0.036 7.8E-07 70.9 0.0 24 824-854 306-329 (722)
222 COG1340 Uncharacterized archae 92.5 23 0.0005 40.3 33.6 55 687-741 66-123 (294)
223 KOG0962 DNA repair protein RAD 92.5 52 0.0011 44.3 31.1 30 717-746 877-906 (1294)
224 COG4717 Uncharacterized conser 92.5 31 0.00068 44.2 24.6 166 709-877 569-765 (984)
225 PRK04778 septation ring format 92.4 37 0.00081 42.5 39.0 62 777-845 278-339 (569)
226 COG2433 Uncharacterized conser 92.3 8.4 0.00018 47.3 19.1 72 670-741 282-368 (652)
227 KOG4593 Mitotic checkpoint pro 92.2 39 0.00085 42.3 33.9 200 610-843 69-271 (716)
228 PRK06893 DNA replication initi 92.1 0.14 3.1E-06 56.1 4.1 49 139-193 10-58 (229)
229 KOG0825 PHD Zn-finger protein 92.0 0.034 7.4E-07 67.8 -1.0 46 1057-1103 124-176 (1134)
230 PRK06620 hypothetical protein; 91.9 0.11 2.4E-06 56.5 2.9 51 138-192 9-62 (214)
231 KOG4302 Microtubule-associated 91.9 44 0.00095 42.2 27.0 91 629-741 48-140 (660)
232 KOG1853 LIS1-interacting prote 91.8 5.8 0.00013 43.3 15.4 43 900-946 138-180 (333)
233 KOG0828 Predicted E3 ubiquitin 91.8 0.047 1E-06 63.8 -0.1 41 1057-1098 572-634 (636)
234 TIGR03017 EpsF chain length de 91.8 16 0.00034 44.1 21.4 62 612-673 173-239 (444)
235 PF07111 HCR: Alpha helical co 91.8 44 0.00096 42.0 32.5 186 649-853 324-544 (739)
236 COG2804 PulE Type II secretory 91.6 0.27 5.9E-06 59.1 5.9 31 163-193 247-277 (500)
237 TIGR03007 pepcterm_ChnLen poly 91.5 6 0.00013 48.4 17.6 127 609-741 203-340 (498)
238 PF13870 DUF4201: Domain of un 91.4 21 0.00046 37.6 20.1 162 611-787 7-172 (177)
239 PF15619 Lebercilin: Ciliary p 91.4 23 0.00051 38.1 22.4 49 898-946 128-180 (194)
240 KOG1001 Helicase-like transcri 91.4 0.071 1.5E-06 66.9 0.8 41 1057-1099 455-501 (674)
241 PF06005 DUF904: Protein of un 91.1 2 4.4E-05 38.6 9.5 60 775-855 5-64 (72)
242 PF14197 Cep57_CLD_2: Centroso 91.1 2.1 4.6E-05 38.2 9.5 65 723-843 3-67 (69)
243 PF01576 Myosin_tail_1: Myosin 90.9 0.069 1.5E-06 69.4 0.0 24 817-840 336-359 (859)
244 PF08614 ATG16: Autophagy prot 90.8 1.6 3.4E-05 46.8 10.3 40 763-802 140-179 (194)
245 COG3096 MukB Uncharacterized p 90.8 36 0.00078 42.6 22.1 55 687-741 345-399 (1480)
246 PF09728 Taxilin: Myosin-like 90.7 38 0.00081 39.2 28.1 134 688-838 133-266 (309)
247 PF09755 DUF2046: Uncharacteri 90.6 36 0.00079 39.0 33.0 26 897-922 231-256 (310)
248 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.4 21 0.00046 35.9 17.6 16 824-839 113-128 (132)
249 PF12718 Tropomyosin_1: Tropom 90.4 23 0.00049 36.3 18.1 113 649-802 21-136 (143)
250 KOG1039 Predicted E3 ubiquitin 90.4 0.12 2.6E-06 59.6 1.5 47 1055-1102 160-225 (344)
251 TIGR01005 eps_transp_fam exopo 90.3 64 0.0014 41.9 26.2 20 653-672 198-217 (754)
252 PF12325 TMF_TATA_bd: TATA ele 90.2 2.2 4.7E-05 42.3 9.7 22 651-672 18-39 (120)
253 COG0419 SbcC ATPase involved i 90.1 80 0.0017 42.0 35.3 18 174-191 25-42 (908)
254 PF04111 APG6: Autophagy prote 90.0 3.1 6.8E-05 48.0 12.5 30 712-741 58-87 (314)
255 PF10481 CENP-F_N: Cenp-F N-te 90.0 3.8 8.1E-05 45.4 12.1 138 649-787 25-189 (307)
256 KOG1814 Predicted E3 ubiquitin 89.9 0.11 2.5E-06 59.8 0.7 28 1057-1085 185-215 (445)
257 COG2805 PilT Tfp pilus assembl 89.8 0.2 4.4E-06 56.4 2.5 31 162-192 113-143 (353)
258 PF10473 CENP-F_leu_zip: Leuci 89.7 26 0.00056 35.8 19.2 73 656-741 10-82 (140)
259 PF07111 HCR: Alpha helical co 89.7 66 0.0014 40.5 33.0 62 611-672 198-272 (739)
260 PF12861 zf-Apc11: Anaphase-pr 89.7 0.21 4.5E-06 46.1 2.0 30 1068-1098 46-82 (85)
261 KOG3002 Zn finger protein [Gen 89.7 0.16 3.5E-06 57.8 1.6 40 1058-1099 50-92 (299)
262 PF04012 PspA_IM30: PspA/IM30 89.6 35 0.00076 37.1 22.7 82 770-853 47-128 (221)
263 PF10473 CENP-F_leu_zip: Leuci 89.5 27 0.00058 35.7 19.6 24 718-741 10-33 (140)
264 PF06785 UPF0242: Uncharacteri 89.4 21 0.00045 40.8 17.5 66 764-829 191-261 (401)
265 PF15035 Rootletin: Ciliary ro 89.4 28 0.0006 37.1 18.0 91 651-741 18-111 (182)
266 KOG4005 Transcription factor X 89.1 1.8 3.9E-05 46.7 8.8 61 773-854 89-149 (292)
267 KOG4360 Uncharacterized coiled 89.0 19 0.00042 43.2 17.7 83 650-741 160-242 (596)
268 TIGR01005 eps_transp_fam exopo 88.9 50 0.0011 42.8 23.6 61 612-672 196-260 (754)
269 TIGR00634 recN DNA repair prot 88.8 45 0.00097 41.8 22.3 32 712-743 169-200 (563)
270 PF10168 Nup88: Nuclear pore c 88.5 45 0.00099 42.9 22.2 30 99-128 124-158 (717)
271 PF10267 Tmemb_cc2: Predicted 88.5 62 0.0014 38.6 30.6 76 608-700 210-286 (395)
272 PRK12377 putative replication 88.4 0.37 8.1E-06 53.6 3.4 51 141-193 70-120 (248)
273 PRK05642 DNA replication initi 88.4 0.41 9E-06 52.7 3.7 48 138-192 12-63 (234)
274 PF05911 DUF869: Plant protein 88.4 33 0.00071 44.3 20.6 118 774-942 596-713 (769)
275 PRK14086 dnaA chromosomal repl 88.3 0.25 5.5E-06 61.2 2.1 51 140-193 283-333 (617)
276 TIGR03185 DNA_S_dndD DNA sulfu 88.1 88 0.0019 39.9 36.3 74 772-850 389-462 (650)
277 PF08317 Spc7: Spc7 kinetochor 88.0 59 0.0013 37.8 26.8 174 608-802 66-251 (325)
278 PRK08084 DNA replication initi 87.9 0.47 1E-05 52.3 3.8 50 138-193 15-64 (235)
279 PF06005 DUF904: Protein of un 87.8 7.5 0.00016 35.1 10.5 33 775-807 26-58 (72)
280 PRK06835 DNA replication prote 87.8 0.19 4.2E-06 58.2 0.6 36 156-193 167-202 (329)
281 PRK08116 hypothetical protein; 87.6 0.34 7.4E-06 54.5 2.5 52 140-193 80-133 (268)
282 TIGR00634 recN DNA repair prot 87.5 54 0.0012 41.1 21.9 14 178-191 26-39 (563)
283 PRK09087 hypothetical protein; 87.5 0.46 1E-05 52.1 3.4 50 137-192 13-62 (226)
284 PRK14088 dnaA chromosomal repl 87.4 0.35 7.6E-06 58.3 2.6 49 140-192 100-148 (440)
285 PF04156 IncA: IncA protein; 87.4 24 0.00052 37.4 16.3 27 712-738 124-150 (191)
286 PRK10884 SH3 domain-containing 87.3 6.7 0.00014 42.6 11.9 19 825-843 148-166 (206)
287 TIGR01843 type_I_hlyD type I s 87.2 71 0.0015 37.8 22.0 33 709-741 142-174 (423)
288 PRK06526 transposase; Provisio 87.1 0.3 6.6E-06 54.5 1.7 45 144-193 73-117 (254)
289 PF00769 ERM: Ezrin/radixin/mo 87.0 15 0.00032 41.1 14.8 12 935-946 187-198 (246)
290 PRK14087 dnaA chromosomal repl 86.8 0.39 8.6E-06 58.0 2.6 49 141-192 111-159 (450)
291 PF14988 DUF4515: Domain of un 86.6 52 0.0011 35.8 18.3 11 828-838 161-171 (206)
292 COG4026 Uncharacterized protei 86.6 13 0.00027 40.2 13.0 46 777-843 145-190 (290)
293 KOG0999 Microtubule-associated 86.6 87 0.0019 38.3 30.8 35 768-802 122-156 (772)
294 KOG4807 F-actin binding protei 86.6 72 0.0015 37.3 24.1 25 683-707 291-315 (593)
295 PF10186 Atg14: UV radiation r 86.3 35 0.00077 38.5 18.0 29 764-792 74-102 (302)
296 TIGR00362 DnaA chromosomal rep 86.3 0.49 1.1E-05 56.3 3.0 50 140-192 105-154 (405)
297 PF10186 Atg14: UV radiation r 86.2 57 0.0012 36.8 19.5 16 726-741 28-43 (302)
298 KOG1962 B-cell receptor-associ 86.2 7.3 0.00016 42.3 11.3 81 728-840 130-210 (216)
299 KOG1853 LIS1-interacting prote 86.1 60 0.0013 35.9 19.0 27 817-843 134-160 (333)
300 PRK00149 dnaA chromosomal repl 85.9 0.51 1.1E-05 57.0 2.9 50 140-192 117-166 (450)
301 PRK10884 SH3 domain-containing 85.5 8.1 0.00018 41.9 11.4 48 687-741 122-169 (206)
302 PRK07952 DNA replication prote 85.3 0.7 1.5E-05 51.3 3.4 51 141-193 68-118 (244)
303 PF08172 CASP_C: CASP C termin 85.1 16 0.00034 40.9 13.7 100 714-840 2-131 (248)
304 TIGR03420 DnaA_homol_Hda DnaA 85.0 0.8 1.7E-05 49.5 3.6 51 136-192 6-56 (226)
305 PF13514 AAA_27: AAA domain 84.9 1.7E+02 0.0036 40.0 37.4 29 718-746 618-646 (1111)
306 KOG4677 Golgi integral membran 84.8 41 0.00089 40.0 17.0 53 693-745 305-357 (554)
307 KOG1002 Nucleotide excision re 84.6 0.26 5.6E-06 58.1 -0.4 42 1055-1097 535-585 (791)
308 KOG0239 Kinesin (KAR3 subfamil 84.6 98 0.0021 39.6 21.9 74 769-846 243-316 (670)
309 COG0593 DnaA ATPase involved i 84.3 0.73 1.6E-05 54.6 3.0 51 139-192 81-131 (408)
310 COG1474 CDC6 Cdc6-related prot 84.2 1.4 3E-05 52.0 5.3 26 166-191 33-59 (366)
311 PRK08903 DnaA regulatory inact 84.2 1 2.2E-05 49.0 4.0 52 136-192 9-60 (227)
312 PF12795 MscS_porin: Mechanose 84.1 73 0.0016 35.2 23.3 91 651-741 40-136 (240)
313 PLN03229 acetyl-coenzyme A car 84.0 1.4E+02 0.003 38.3 25.5 36 907-946 693-728 (762)
314 PF09738 DUF2051: Double stran 83.9 44 0.00096 38.4 16.9 40 758-797 124-163 (302)
315 PRK10246 exonuclease subunit S 83.9 1.8E+02 0.0038 39.5 33.1 17 175-191 31-47 (1047)
316 PF04111 APG6: Autophagy prote 83.9 6.4 0.00014 45.5 10.4 23 778-800 54-76 (314)
317 PF14073 Cep57_CLD: Centrosome 83.7 53 0.0012 34.8 15.9 30 712-741 58-87 (178)
318 KOG0243 Kinesin-like protein [ 83.7 78 0.0017 41.8 20.5 160 622-802 315-483 (1041)
319 TIGR02928 orc1/cdc6 family rep 83.6 1 2.2E-05 52.5 4.0 26 167-192 32-58 (365)
320 PF11932 DUF3450: Protein of u 83.4 34 0.00074 38.1 15.7 17 906-922 128-144 (251)
321 PF05483 SCP-1: Synaptonemal c 83.3 1.4E+02 0.003 37.7 35.1 46 613-662 373-418 (786)
322 PF07058 Myosin_HC-like: Myosi 83.3 22 0.00049 40.1 13.6 109 707-843 17-135 (351)
323 KOG1103 Predicted coiled-coil 83.3 94 0.002 35.8 20.0 46 811-856 247-292 (561)
324 KOG2113 Predicted RNA binding 83.0 0.54 1.2E-05 52.5 1.2 48 1056-1103 136-188 (394)
325 PRK08727 hypothetical protein; 82.9 1.1 2.3E-05 49.4 3.5 47 138-192 12-59 (233)
326 PRK00411 cdc6 cell division co 82.6 1.2 2.6E-05 52.6 4.0 22 171-192 52-73 (394)
327 PF15254 CCDC14: Coiled-coil d 82.6 1.5E+02 0.0033 37.8 23.8 68 782-849 488-555 (861)
328 PF06156 DUF972: Protein of un 82.5 4.1 9E-05 39.5 6.9 44 759-802 7-50 (107)
329 KOG0982 Centrosomal protein Nu 82.2 1.2E+02 0.0025 36.2 20.5 173 615-855 262-444 (502)
330 PRK08181 transposase; Validate 82.2 1.2 2.6E-05 50.3 3.6 21 171-193 105-125 (269)
331 PF13851 GAS: Growth-arrest sp 82.2 80 0.0017 34.2 22.4 24 779-802 148-171 (201)
332 PRK15422 septal ring assembly 82.0 20 0.00043 32.8 10.3 42 761-802 5-46 (79)
333 KOG1003 Actin filament-coating 81.9 78 0.0017 33.9 23.6 105 699-845 83-187 (205)
334 PRK08939 primosomal protein Dn 81.3 0.82 1.8E-05 52.5 1.9 51 142-193 124-175 (306)
335 KOG4438 Centromere-associated 81.0 1.3E+02 0.0028 35.9 29.4 123 716-853 214-342 (446)
336 KOG4809 Rab6 GTPase-interactin 81.0 1.1E+02 0.0025 37.4 19.0 28 613-640 341-368 (654)
337 PF04156 IncA: IncA protein; 80.9 45 0.00097 35.4 14.9 26 716-741 86-111 (191)
338 PF10146 zf-C4H2: Zinc finger- 80.8 54 0.0012 36.3 15.6 65 774-838 32-96 (230)
339 PF13870 DUF4201: Domain of un 80.6 80 0.0017 33.2 21.2 27 709-735 47-73 (177)
340 PF04851 ResIII: Type III rest 80.5 1.1 2.3E-05 46.1 2.3 30 164-193 14-44 (184)
341 PF15035 Rootletin: Ciliary ro 80.2 52 0.0011 35.1 14.7 27 817-843 96-122 (182)
342 KOG2932 E3 ubiquitin ligase in 80.1 0.6 1.3E-05 52.1 0.3 41 1057-1099 91-135 (389)
343 PF00769 ERM: Ezrin/radixin/mo 79.9 70 0.0015 35.7 16.4 19 716-734 24-42 (246)
344 PF12325 TMF_TATA_bd: TATA ele 79.7 69 0.0015 31.9 15.2 43 775-838 24-66 (120)
345 PRK13169 DNA replication intia 79.6 6.1 0.00013 38.6 6.9 44 759-802 7-50 (110)
346 PF10212 TTKRSYEDQ: Predicted 79.4 1.5E+02 0.0033 36.4 19.8 79 777-858 416-494 (518)
347 cd00009 AAA The AAA+ (ATPases 79.2 1.5 3.2E-05 42.6 2.8 27 165-191 10-36 (151)
348 smart00787 Spc7 Spc7 kinetocho 78.5 1.4E+02 0.003 34.7 27.3 179 607-802 60-246 (312)
349 PF10235 Cript: Microtubule-as 78.4 1.2 2.5E-05 41.7 1.6 38 1056-1099 44-81 (90)
350 PRK10869 recombination and rep 78.2 1.9E+02 0.0042 36.2 23.8 14 178-191 26-39 (553)
351 KOG2991 Splicing regulator [RN 77.8 1.2E+02 0.0026 33.7 23.2 52 652-709 118-169 (330)
352 PF11559 ADIP: Afadin- and alp 77.7 57 0.0012 33.4 13.9 84 770-853 48-131 (151)
353 PF09744 Jnk-SapK_ap_N: JNK_SA 77.5 82 0.0018 32.9 14.8 53 777-843 85-137 (158)
354 KOG1937 Uncharacterized conser 77.5 1.7E+02 0.0037 35.2 27.9 21 653-673 283-303 (521)
355 KOG0804 Cytoplasmic Zn-finger 77.3 62 0.0013 38.7 15.2 12 294-305 147-158 (493)
356 PF07058 Myosin_HC-like: Myosi 77.2 71 0.0015 36.4 14.9 139 775-946 15-159 (351)
357 KOG0826 Predicted E3 ubiquitin 77.0 0.62 1.3E-05 52.6 -0.8 50 1055-1104 299-354 (357)
358 PF11932 DUF3450: Protein of u 76.9 25 0.00055 39.2 11.9 14 825-838 79-92 (251)
359 PF03962 Mnd1: Mnd1 family; I 76.9 45 0.00097 35.7 13.2 102 710-857 61-166 (188)
360 PTZ00112 origin recognition co 76.6 2.4 5.1E-05 54.5 4.0 22 171-192 778-799 (1164)
361 TIGR02977 phageshock_pspA phag 76.4 1.2E+02 0.0027 33.1 22.2 80 772-853 50-129 (219)
362 PRK10246 exonuclease subunit S 76.3 3E+02 0.0064 37.4 37.7 29 713-741 618-646 (1047)
363 TIGR01000 bacteriocin_acc bact 76.3 1.9E+02 0.0041 35.2 23.9 22 720-741 174-195 (457)
364 cd07665 BAR_SNX1 The Bin/Amphi 76.2 1.1E+02 0.0024 33.9 16.4 57 611-673 44-100 (234)
365 KOG0288 WD40 repeat protein Ti 76.2 36 0.00078 40.1 12.8 39 763-801 44-82 (459)
366 PRK12704 phosphodiesterase; Pr 76.1 38 0.00083 41.9 14.2 54 768-822 118-171 (520)
367 COG0419 SbcC ATPase involved i 76.1 2.8E+02 0.006 37.0 36.9 22 612-633 169-190 (908)
368 PF08317 Spc7: Spc7 kinetochor 76.0 1.6E+02 0.0035 34.2 28.7 23 651-673 77-99 (325)
369 KOG0297 TNF receptor-associate 75.5 1.4 3E-05 52.5 1.5 44 1056-1100 21-69 (391)
370 cd00046 DEXDc DEAD-like helica 75.3 1.3 2.8E-05 42.6 1.0 17 177-193 3-19 (144)
371 PRK06921 hypothetical protein; 74.9 2.5 5.3E-05 47.7 3.3 36 157-193 98-136 (266)
372 KOG0288 WD40 repeat protein Ti 74.5 93 0.002 36.9 15.5 37 707-743 37-73 (459)
373 PF13245 AAA_19: Part of AAA d 74.3 1.9 4.1E-05 39.1 1.8 26 166-192 3-28 (76)
374 PRK03992 proteasome-activating 74.3 2.7 5.7E-05 50.0 3.5 51 141-191 127-182 (389)
375 PRK12422 chromosomal replicati 74.3 2.3 4.9E-05 51.5 3.0 50 140-192 106-159 (445)
376 TIGR01010 BexC_CtrB_KpsE polys 74.1 1E+02 0.0022 36.2 16.7 88 609-701 169-260 (362)
377 COG0497 RecN ATPase involved i 73.9 2.2E+02 0.0048 35.5 19.5 39 610-648 171-209 (557)
378 PF12240 Angiomotin_C: Angiomo 73.9 1.4E+02 0.003 32.4 17.7 83 685-790 5-87 (205)
379 PLN00020 ribulose bisphosphate 73.8 7.5 0.00016 45.8 6.8 53 139-191 109-165 (413)
380 PTZ00454 26S protease regulato 73.8 2.3 5E-05 50.7 2.8 51 141-191 141-196 (398)
381 PF07798 DUF1640: Protein of u 73.5 1.3E+02 0.0028 31.8 18.5 23 719-741 74-96 (177)
382 PLN03229 acetyl-coenzyme A car 73.4 1.6E+02 0.0034 37.8 18.2 148 651-805 560-729 (762)
383 PRK10436 hypothetical protein; 73.1 2 4.4E-05 52.1 2.2 28 165-192 209-236 (462)
384 TIGR02538 type_IV_pilB type IV 73.1 1.9 4.2E-05 53.7 2.0 28 165-192 307-334 (564)
385 TIGR02533 type_II_gspE general 73.0 2.2 4.7E-05 52.2 2.4 28 165-192 233-260 (486)
386 COG2433 Uncharacterized conser 72.9 37 0.0008 42.0 12.4 80 763-853 425-504 (652)
387 PF15397 DUF4618: Domain of un 72.9 1.7E+02 0.0037 33.0 23.3 199 620-853 5-209 (258)
388 PF06008 Laminin_I: Laminin Do 72.7 1.7E+02 0.0036 32.9 25.9 81 649-741 87-169 (264)
389 KOG4445 Uncharacterized conser 72.6 0.89 1.9E-05 50.6 -0.9 25 1058-1083 117-144 (368)
390 KOG0989 Replication factor C, 72.4 2.9 6.2E-05 47.6 3.0 32 161-192 43-75 (346)
391 PTZ00361 26 proteosome regulat 72.3 4.3 9.4E-05 48.9 4.7 89 103-191 128-234 (438)
392 PF13401 AAA_22: AAA domain; P 72.3 1.4 3.1E-05 43.0 0.5 19 174-192 4-22 (131)
393 PF03999 MAP65_ASE1: Microtubu 72.2 13 0.00027 47.2 8.9 137 710-853 206-356 (619)
394 PF01935 DUF87: Domain of unkn 72.1 1.6 3.4E-05 47.5 0.9 16 177-192 26-41 (229)
395 PF09738 DUF2051: Double stran 72.1 1.6E+02 0.0034 34.0 16.8 15 687-701 109-123 (302)
396 PF10272 Tmpp129: Putative tra 71.9 4.9 0.00011 46.9 4.8 44 1029-1072 243-287 (358)
397 PRK02119 hypothetical protein; 71.5 14 0.0003 33.4 6.6 54 726-793 3-56 (73)
398 TIGR00631 uvrb excinuclease AB 71.4 4 8.7E-05 51.8 4.3 88 142-234 2-97 (655)
399 PF08826 DMPK_coil: DMPK coile 71.2 32 0.0007 30.1 8.4 36 706-741 20-55 (61)
400 KOG4809 Rab6 GTPase-interactin 71.2 2.6E+02 0.0057 34.5 24.8 75 772-853 329-403 (654)
401 KOG3842 Adaptor protein Pellin 71.0 2.3 5.1E-05 47.6 1.8 37 256-299 63-99 (429)
402 COG1484 DnaC DNA replication p 71.0 3.5 7.5E-05 46.2 3.3 50 141-193 75-124 (254)
403 PRK10698 phage shock protein P 70.9 1.7E+02 0.0037 32.2 22.8 86 764-851 42-127 (222)
404 PF00437 T2SE: Type II/IV secr 70.8 2.2 4.7E-05 47.8 1.7 19 174-192 127-145 (270)
405 PF00270 DEAD: DEAD/DEAH box h 70.8 2.5 5.5E-05 43.0 2.0 26 165-192 7-32 (169)
406 KOG1962 B-cell receptor-associ 70.5 20 0.00043 39.0 8.6 34 708-741 155-188 (216)
407 PRK09183 transposase/IS protei 70.4 2.6 5.7E-05 47.2 2.2 45 144-193 77-121 (259)
408 PRK00106 hypothetical protein; 70.3 2.4E+02 0.0052 35.2 18.8 53 770-823 135-187 (535)
409 KOG4421 Uncharacterized conser 70.1 1.7E+02 0.0036 34.1 15.9 50 788-837 152-201 (637)
410 TIGR01420 pilT_fam pilus retra 70.0 2.7 5.8E-05 49.1 2.2 28 165-192 113-140 (343)
411 KOG0804 Cytoplasmic Zn-finger 70.0 1.7E+02 0.0037 35.2 16.4 44 698-741 348-391 (493)
412 TIGR02525 plasmid_TraJ plasmid 69.9 2.8 6.1E-05 49.5 2.3 20 173-192 148-167 (372)
413 KOG0244 Kinesin-like protein [ 69.9 3.6E+02 0.0077 35.5 21.3 23 608-630 328-350 (913)
414 TIGR01242 26Sp45 26S proteasom 69.9 5.5 0.00012 46.8 4.8 51 141-191 118-173 (364)
415 COG3074 Uncharacterized protei 69.7 78 0.0017 28.2 10.3 38 763-800 7-44 (79)
416 PF15294 Leu_zip: Leucine zipp 69.6 99 0.0021 35.1 14.1 146 608-782 130-275 (278)
417 smart00382 AAA ATPases associa 69.4 2.1 4.5E-05 41.0 1.0 18 175-192 3-20 (148)
418 COG5175 MOT2 Transcriptional r 69.2 1.7 3.8E-05 49.0 0.4 42 1057-1099 15-65 (480)
419 cd01131 PilT Pilus retraction 69.2 2.1 4.6E-05 45.8 1.1 19 174-192 1-19 (198)
420 PF13604 AAA_30: AAA domain; P 69.0 3 6.5E-05 44.7 2.1 28 165-192 9-36 (196)
421 PF09755 DUF2046: Uncharacteri 68.9 2.2E+02 0.0049 32.8 27.1 30 712-741 35-64 (310)
422 PF05290 Baculo_IE-1: Baculovi 68.9 3.8 8.2E-05 40.9 2.6 47 1053-1100 77-134 (140)
423 TIGR03015 pepcterm_ATPase puta 68.7 4.3 9.3E-05 45.0 3.4 25 168-192 37-61 (269)
424 PF01695 IstB_IS21: IstB-like 68.5 3.3 7.2E-05 43.7 2.3 20 174-193 47-66 (178)
425 PF12846 AAA_10: AAA-like doma 68.3 2.2 4.7E-05 47.7 0.9 19 174-192 1-19 (304)
426 TIGR02524 dot_icm_DotB Dot/Icm 67.9 3.2 6.9E-05 48.8 2.2 21 172-192 132-152 (358)
427 PF10498 IFT57: Intra-flagella 67.8 1.5E+02 0.0033 35.0 15.9 26 649-674 241-266 (359)
428 PRK11546 zraP zinc resistance 67.6 36 0.00077 34.9 9.2 74 607-711 44-117 (143)
429 PF14197 Cep57_CLD_2: Centroso 67.5 36 0.00079 30.5 8.3 54 688-741 10-63 (69)
430 PF11559 ADIP: Afadin- and alp 67.3 1.5E+02 0.0033 30.2 18.0 49 693-741 34-82 (151)
431 PRK10361 DNA recombination pro 67.3 3.1E+02 0.0066 33.7 24.6 26 816-841 165-190 (475)
432 PF04012 PspA_IM30: PspA/IM30 67.3 1.9E+02 0.0041 31.4 15.9 22 652-673 26-47 (221)
433 PF05673 DUF815: Protein of un 67.3 2.4 5.1E-05 47.1 0.9 129 141-299 23-155 (249)
434 TIGR03319 YmdA_YtgF conserved 67.3 3.2E+02 0.007 34.0 22.8 54 767-821 111-164 (514)
435 cd01129 PulE-GspE PulE/GspE Th 67.0 3.7 7.9E-05 46.2 2.4 27 166-192 72-98 (264)
436 PF15450 DUF4631: Domain of un 66.7 3.2E+02 0.0069 33.7 20.5 193 608-853 335-531 (531)
437 COG1842 PspA Phage shock prote 66.5 2E+02 0.0043 31.8 15.5 122 776-957 19-140 (225)
438 COG5008 PilU Tfp pilus assembl 66.3 4.5 9.7E-05 45.1 2.8 31 162-192 115-145 (375)
439 COG5219 Uncharacterized conser 66.2 2.6 5.6E-05 53.4 1.0 32 376-407 892-923 (1525)
440 PF04710 Pellino: Pellino; In 66.1 1.9 4.2E-05 50.1 0.0 6 333-338 241-246 (416)
441 PRK09841 cryptic autophosphory 66.1 2E+02 0.0043 37.3 18.0 25 652-676 270-294 (726)
442 PF04102 SlyX: SlyX; InterPro 65.7 17 0.00037 32.4 5.9 37 758-794 16-52 (69)
443 PF10146 zf-C4H2: Zinc finger- 65.3 1.8E+02 0.0038 32.3 14.9 21 1077-1097 194-218 (230)
444 KOG3476 Microtubule-associated 65.3 0.74 1.6E-05 42.0 -2.8 38 1057-1100 55-92 (100)
445 PRK04406 hypothetical protein; 65.0 24 0.00053 32.1 6.8 50 729-792 8-57 (75)
446 PRK15422 septal ring assembly 65.0 63 0.0014 29.6 9.2 30 824-853 40-69 (79)
447 PF14570 zf-RING_4: RING/Ubox 64.9 2.3 4.9E-05 35.2 0.2 38 1059-1097 1-47 (48)
448 TIGR03752 conj_TIGR03752 integ 64.5 54 0.0012 39.7 11.3 44 759-802 58-101 (472)
449 COG3096 MukB Uncharacterized p 64.4 4E+02 0.0087 34.1 28.2 33 598-630 773-805 (1480)
450 PF06008 Laminin_I: Laminin Do 64.1 2.5E+02 0.0054 31.5 22.3 46 820-865 206-251 (264)
451 PF10498 IFT57: Intra-flagella 63.9 2.3E+02 0.005 33.5 16.4 43 697-739 266-308 (359)
452 PF06156 DUF972: Protein of un 63.8 29 0.00064 33.7 7.5 52 784-849 4-55 (107)
453 PF15290 Syntaphilin: Golgi-lo 63.7 93 0.002 35.1 12.1 26 716-741 80-105 (305)
454 PF10367 Vps39_2: Vacuolar sor 63.6 7.7 0.00017 36.8 3.6 31 1054-1085 76-108 (109)
455 KOG2196 Nuclear porin [Nuclear 63.6 2.4E+02 0.0053 31.3 18.0 124 688-829 76-205 (254)
456 PF05266 DUF724: Protein of un 63.5 1.5E+02 0.0033 31.9 13.6 58 684-741 87-147 (190)
457 KOG3091 Nuclear pore complex, 63.2 2.2E+02 0.0047 34.8 15.8 89 613-702 341-430 (508)
458 KOG1734 Predicted RING-contain 63.2 3.4 7.3E-05 45.7 1.1 44 1055-1099 223-282 (328)
459 COG4026 Uncharacterized protei 63.0 71 0.0015 34.7 10.7 37 705-741 143-179 (290)
460 KOG0979 Structural maintenance 63.0 4.9E+02 0.011 34.6 24.4 29 612-640 183-211 (1072)
461 PHA00729 NTP-binding motif con 62.8 5.8 0.00013 43.6 2.9 32 161-192 4-35 (226)
462 PF12777 MT: Microtubule-bindi 62.7 47 0.001 38.9 10.6 55 777-838 259-313 (344)
463 KOG1003 Actin filament-coating 61.8 2.3E+02 0.0051 30.5 22.8 30 712-741 5-34 (205)
464 PRK02793 phi X174 lysis protei 61.7 29 0.00062 31.3 6.6 50 730-793 6-55 (72)
465 PF10212 TTKRSYEDQ: Predicted 61.7 87 0.0019 38.4 12.5 75 697-781 441-515 (518)
466 KOG1428 Inhibitor of type V ad 61.5 3.2 6.9E-05 54.4 0.7 44 1056-1100 3486-3546(3738)
467 COG3264 Small-conductance mech 61.3 4.3E+02 0.0093 34.5 18.8 78 719-802 16-93 (835)
468 TIGR02782 TrbB_P P-type conjug 61.3 5.1 0.00011 46.0 2.2 28 164-192 123-150 (299)
469 COG5220 TFB3 Cdk activating ki 61.1 2 4.4E-05 46.4 -1.0 38 1058-1096 15-62 (314)
470 PF10211 Ax_dynein_light: Axon 61.0 1.2E+02 0.0026 32.5 12.3 60 775-840 128-187 (189)
471 PRK13894 conjugal transfer ATP 61.0 4.9 0.00011 46.5 2.0 28 164-192 139-166 (319)
472 PF05970 PIF1: PIF1-like helic 60.9 5.6 0.00012 46.9 2.5 37 151-191 3-39 (364)
473 PF15066 CAGE1: Cancer-associa 60.8 3.8E+02 0.0082 32.6 23.0 78 713-790 399-476 (527)
474 PF09744 Jnk-SapK_ap_N: JNK_SA 60.7 2.2E+02 0.0047 29.8 16.2 29 775-803 90-118 (158)
475 KOG2660 Locus-specific chromos 60.6 2.2 4.8E-05 48.5 -0.8 45 1057-1102 16-65 (331)
476 TIGR02449 conserved hypothetic 60.5 40 0.00087 29.9 7.0 48 694-741 4-51 (65)
477 PF10234 Cluap1: Clusterin-ass 60.3 1.6E+02 0.0036 33.3 13.6 40 763-802 193-239 (267)
478 PF01637 Arch_ATPase: Archaeal 60.3 4.3 9.4E-05 43.3 1.4 29 164-192 10-38 (234)
479 PF13479 AAA_24: AAA domain 60.2 4.4 9.6E-05 43.9 1.4 20 174-193 3-22 (213)
480 PF00004 AAA: ATPase family as 60.2 3.6 7.7E-05 39.9 0.6 15 177-191 1-15 (132)
481 PRK12704 phosphodiesterase; Pr 60.1 3.3E+02 0.0073 33.9 17.6 52 695-746 94-145 (520)
482 PRK11519 tyrosine kinase; Prov 59.9 3.5E+02 0.0075 35.1 18.6 27 651-677 269-295 (719)
483 PF00448 SRP54: SRP54-type pro 59.7 3.9 8.3E-05 44.0 0.8 17 176-192 3-19 (196)
484 TIGR02449 conserved hypothetic 59.4 66 0.0014 28.6 8.2 53 777-829 10-62 (65)
485 smart00744 RINGv The RING-vari 59.3 6.5 0.00014 32.6 1.9 36 1058-1094 1-49 (49)
486 TIGR01010 BexC_CtrB_KpsE polys 59.2 3.5E+02 0.0076 31.7 18.6 29 649-677 170-198 (362)
487 PF12329 TMF_DNA_bd: TATA elem 59.1 99 0.0021 28.1 9.6 68 654-741 3-70 (74)
488 KOG1705 Uncharacterized conser 59.0 3.2 7E-05 38.4 0.1 34 1057-1095 28-63 (110)
489 PRK00736 hypothetical protein; 58.9 23 0.0005 31.6 5.5 37 757-793 16-52 (68)
490 PF02318 FYVE_2: FYVE-type zin 58.9 5.8 0.00013 39.1 1.9 40 1055-1095 53-102 (118)
491 PRK12402 replication factor C 58.7 7 0.00015 44.9 2.8 43 142-192 12-54 (337)
492 PHA02544 44 clamp loader, smal 58.6 6.9 0.00015 44.7 2.7 22 171-192 39-61 (316)
493 KOG2991 Splicing regulator [RN 58.5 3E+02 0.0066 30.7 18.5 54 688-741 106-159 (330)
494 KOG2008 BTK-associated SH3-dom 58.4 3.4E+02 0.0073 31.2 17.5 15 904-918 192-206 (426)
495 PRK00295 hypothetical protein; 58.4 35 0.00075 30.5 6.4 50 730-793 3-52 (68)
496 PF00170 bZIP_1: bZIP transcri 58.0 34 0.00073 29.8 6.3 31 772-802 24-54 (64)
497 PF12240 Angiomotin_C: Angiomo 57.9 1.1E+02 0.0024 33.1 11.1 30 895-924 57-86 (205)
498 COG1201 Lhr Lhr-like helicases 57.8 13 0.00029 48.0 5.2 55 165-230 30-85 (814)
499 PF09304 Cortex-I_coil: Cortex 57.7 1.8E+02 0.0039 28.4 11.3 87 746-853 2-88 (107)
500 KOG2129 Uncharacterized conser 57.6 4E+02 0.0086 31.8 18.8 221 714-955 46-303 (552)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-84 Score=787.22 Aligned_cols=398 Identities=35% Similarity=0.574 Sum_probs=337.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEeecC-CE-EEecCC----CCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG-DK-IVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~-i~~~~~----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
.+.+.||+|+|||||++.+|......+++..+| .+ |.+... .-.+.|+||+||||.+.|.+||+.++.|+|..|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 455679999999999999998888888887776 33 332222 236789999999999999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCC--------CCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCC
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHG--------DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G--------~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~ 241 (1105)
+.|||||||||||||+||||||.| .+..+|||||++.+||+.+.... .+|.|+|||+|+|||.|+|||+|.
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence 999999999999999999999999 56788999999999999997654 899999999999999999999886
Q ss_pred C---CccceeecC------CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-
Q 001297 242 G---QNLRVREDA------QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE- 311 (1105)
Q Consensus 242 ~---~~l~ired~------~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~- 311 (1105)
. ..+.+.+++ .|++|.||.+++|.++.|++.+|.+|...|++++|.||++|||||+||+|+|.....+..
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g 283 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG 283 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence 4 345555555 479999999999999999999999999999999999999999999999999987665443
Q ss_pred CcceEeeeeehhhhhcccccccccccccc---ccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhc
Q 001297 312 YDGVIFSQLVRWFFLSVKTAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL 388 (1105)
Q Consensus 312 ~~~~~~s~l~~~~~~~~~~~~lvDLa~s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLL 388 (1105)
..-+..++|+ ||||||++ ++|+.+.|.+|++.||+||+|||+||+||.++ ..|||||+|||||||
T Consensus 284 eelvK~GKLN-----------LVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLL 351 (1041)
T KOG0243|consen 284 EELVKIGKLN-----------LVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLL 351 (1041)
T ss_pred hhhHhhcccc-----------eeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHH
Confidence 2345667777 99999985 68888889999999999999999999999995 469999999999999
Q ss_pred ccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccccCC
Q 001297 389 QSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGV 468 (1105)
Q Consensus 389 qdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~~~~~~~ 468 (1105)
||||||..||+|||||||+..+++||++||.||.|||+|+|+|.+|..+..+.+++.|-.||.+||.+|...+......+
T Consensus 352 QDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyi 431 (1041)
T KOG0243|consen 352 QDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYI 431 (1041)
T ss_pred HHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876655555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 469 SHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTK 510 (1105)
Q Consensus 469 ~~~e~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~l~~ 510 (1105)
+++........ ...+..++++.+....++..++..++.
T Consensus 432 see~y~~~e~e----~~~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 432 SEERYTQEEKE----KKEMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544322111 122333344444444555555554443
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-87 Score=789.25 Aligned_cols=377 Identities=38% Similarity=0.572 Sum_probs=332.9
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEe-cC--CCCCcceeeceecCCC-------CChhHHHhhhhHHHHHH
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-NE--YNPATAYAFDRVFGPH-------ANSQEVYDVAARPVVKA 168 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~-~~--~~~~~~f~FD~VF~~~-------~tq~~Vy~~~~~plV~~ 168 (1105)
..+|+|+||||||+.+|......+++.+.|.++.+ +. .+....|+||++||.+ ++|..||+.+++++|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46799999999999999988888888877765432 22 2344569999999876 58999999999999999
Q ss_pred HhcCCCeEEEEeccCCCCCccccCCCC--CCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccC-CC-C
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD-PT-G 242 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm~G~~--~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~-p~-~ 242 (1105)
+|+|||+||||||||||||||||+|.+ +++|||||+|++||.+|... .+..|.|.|||+|||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999987 89999999999999999754 457899999999999999999999 54 5
Q ss_pred CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCC--cceEeee
Q 001297 243 QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFSQ 319 (1105)
Q Consensus 243 ~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~--~~~~~s~ 319 (1105)
.+|+|||+| .|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+..+.... +...+|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 789999999 7999999999999999999999999999999999999999999999999999987654333 3567888
Q ss_pred eehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC------CCCcccCCCCccchhccc
Q 001297 320 LVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG------KASHVPYRDSKLTRLLQS 390 (1105)
Q Consensus 320 l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~------k~~hvPyRdSkLTrLLqd 390 (1105)
++ ||||||+++ +++.|.|+|||.+|||||+|||+||+||++. +..+||||||.|||||++
T Consensus 243 Is-----------LVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkE 311 (1221)
T KOG0245|consen 243 IS-----------LVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKE 311 (1221)
T ss_pred ee-----------EEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHH
Confidence 88 999999876 7888999999999999999999999999872 345999999999999999
Q ss_pred CCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHccccc----
Q 001297 391 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILV---- 466 (1105)
Q Consensus 391 sLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~~~~~---- 466 (1105)
+|||||||+|||+|||+..||+|||+|||||+|||+|+|+|++|+..+.+ +|++|+.||.+||..|.....+...
T Consensus 312 nLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~ 390 (1221)
T KOG0245|consen 312 NLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGS 390 (1221)
T ss_pred hcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCC
Confidence 99999999999999999999999999999999999999999999977665 8999999999999988764433221
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHH
Q 001297 467 ---GVSHEELMTLRQKLEEGQVKM 487 (1105)
Q Consensus 467 ---~~~~~e~~~l~~~l~~~~~~~ 487 (1105)
.+...++.+++++|++.+..|
T Consensus 391 p~~~~~~~~~e~~~~~L~E~Ek~m 414 (1221)
T KOG0245|consen 391 PSALLSQPEIEELRERLQETEKIM 414 (1221)
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 134667888888887755433
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-86 Score=774.50 Aligned_cols=352 Identities=42% Similarity=0.603 Sum_probs=314.1
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecCC--EEEe-cC----CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVR-NE----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~i~~-~~----~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~ 171 (1105)
..+|+|+||+||+...+...+....+..+.. .+.. +. ..+.+.|+||+||+++++|++||+.++.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 5689999999999987765544333332222 2222 11 224567999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCccccCCC-CCCCCchhHHHHHHHHhhccCCC-ceEEEEEeeeeeecceeeeccCCCC-Ccccee
Q 001297 172 GVNGTVFAYGVTSSGKTHTMHGD-QNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~G~-~~~~GIipra~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~p~~-~~l~ir 248 (1105)
||||||||||||||||||||.|+ +...|||||++.+||.+|....+ ..|.|+|||+|||||.|+|||+|.. +.+.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 99999999999999999999999 66789999999999999987754 4799999999999999999999987 689999
Q ss_pred ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecC-CCCCCcceEeeeeehhhhh
Q 001297 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD-HGDEYDGVIFSQLVRWFFL 326 (1105)
Q Consensus 249 ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~-~~~~~~~~~~s~l~~~~~~ 326 (1105)
+++ .|+||+||+++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++.. ..++......++|+
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln----- 238 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN----- 238 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee-----
Confidence 999 79999999999999999999999999999999999999999999999999999933 23344456678888
Q ss_pred cccccccccccccc---ccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEee
Q 001297 327 SVKTAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 403 (1105)
Q Consensus 327 ~~~~~~lvDLa~s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~ 403 (1105)
||||+|++ ++++.|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+||||
T Consensus 239 ------lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mian 312 (574)
T KOG4280|consen 239 ------LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIAN 312 (574)
T ss_pred ------eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEe
Confidence 99999986 478889999999999999999999999999998889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHc
Q 001297 404 VTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKR 462 (1105)
Q Consensus 404 IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~ 462 (1105)
|+|+..+++||++||+||+|||.|+|+|.+|+..+ ++.+..|+.||..|+.+|.....
T Consensus 313 vsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 313 VSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred cCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999655 46899999999999999998644
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.1e-79 Score=748.56 Aligned_cols=355 Identities=36% Similarity=0.605 Sum_probs=312.7
Q ss_pred CCCCCCCCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001297 91 PLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1105)
Q Consensus 91 ~~~~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l 170 (1105)
+.+.+....++|+|+|||||+++.| .+..+++..+++.+.+. .+.|.||+||+++++|++||+.++.|+|+++|
T Consensus 89 ~~~en~~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svL 162 (1320)
T PLN03188 89 TAPENGVSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCL 162 (1320)
T ss_pred ccccccCCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 3334445567999999999999886 35556666667766654 36799999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCCccccCCCC----------CCCCchhHHHHHHHHhhccC------CCceEEEEEeeeeeeccee
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMHGDQ----------NSPGIIPLAIKDVFSIIQDT------PGREFLLRVSYLEIYNEVI 234 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~G~~----------~~~GIipra~~~LF~~i~~~------~~~~~~v~vS~lEIYnE~i 234 (1105)
+|||+||||||||||||||||+|+. .++|||||++++||..|... .+..|.|+|||+|||||+|
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI 242 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQI 242 (1320)
T ss_pred cCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcc
Confidence 9999999999999999999999964 46899999999999998642 3457999999999999999
Q ss_pred eeccCCCCCccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCC--CC
Q 001297 235 NDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DE 311 (1105)
Q Consensus 235 ~DLL~p~~~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~--~~ 311 (1105)
||||+|....+.|++++ .|+||.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++.... ++
T Consensus 243 ~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred eeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 99999998899999998 5899999999999999999999999999999999999999999999999999875432 22
Q ss_pred CcceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhc----CCCCcccCCCCcc
Q 001297 312 YDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSE----GKASHVPYRDSKL 384 (1105)
Q Consensus 312 ~~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~----~k~~hvPyRdSkL 384 (1105)
......++|+ ||||||+++ +++.|.+++|+++||+||++||+||.+|++ ++..|||||||||
T Consensus 323 ~ss~r~SkLn-----------LVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 323 LSSFKTSRIN-----------LVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred CcceEEEEEE-----------EEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence 2345567777 999999875 678899999999999999999999999985 4557999999999
Q ss_pred chhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHccc
Q 001297 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGI 464 (1105)
Q Consensus 385 TrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~~~ 464 (1105)
|+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|.|.+|..... .+..|++.|..|++||..++.+.
T Consensus 392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~--~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD--DVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999986543 35667888888888888887653
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-84 Score=781.59 Aligned_cols=353 Identities=49% Similarity=0.771 Sum_probs=326.2
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCCCC-------CcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNP-------ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~~~-------~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~ 171 (1105)
...|.|+|||||+++++...++.+.|...++..++..... ...|.||+||+++++|++||+..++|+|+++|.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4579999999999999877788888887666554433322 378999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCCCccceeecC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~ 251 (1105)
||||||||||||||||||||+|...+|||||+++.+||++|.+..++.|.|+|||+|||||.|||||+|.+..+.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred C-CcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccc
Q 001297 252 Q-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKT 330 (1105)
Q Consensus 252 ~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~ 330 (1105)
. |++|.||++++|.|+++++.+|..|+.+|+++.|.+|..|||||+||+|+|.+...... . ..++|+
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~--~~s~L~--------- 232 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S--RVSKLN--------- 232 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c--hhheeh---------
Confidence 5 89999999999999999999999999999999999999999999999999999876544 1 445566
Q ss_pred ccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC-CCCcccCCCCccchhcccCCCCCccceeEeeeCC
Q 001297 331 AYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTP 406 (1105)
Q Consensus 331 ~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~-k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP 406 (1105)
||||||+++ +++.|.|++||++||+||++||+||.+|+++ ...||||||||||||||++||||++|+|||||+|
T Consensus 233 --lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp 310 (675)
T KOG0242|consen 233 --LIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISP 310 (675)
T ss_pred --hhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCc
Confidence 999999875 6777889999999999999999999999998 4668999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 001297 407 ASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGIL 465 (1105)
Q Consensus 407 ~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~~~~~ 465 (1105)
+..+|+||.+||+||+|||.|++++.+|.+.....++..++++|..|+.++..++....
T Consensus 311 ~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 311 SSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999998999889999999999999876653
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.5e-81 Score=713.55 Aligned_cols=340 Identities=42% Similarity=0.625 Sum_probs=309.3
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEEeec--CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCe
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~--~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~ 175 (1105)
.-++|+|+||+||.+..|...+...+..+. ..++++...+....|.||+||.|+++|++||+.++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 346899999999999999877776554433 345666555566899999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCccccCCCCC---CCCchhHHHHHHHHhhccCCC-ceEEEEEeeeeeecceeeeccCCCCCccceeecC
Q 001297 176 TVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~G~~~---~~GIipra~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~ 251 (1105)
||||||||||||||||.|... ..|||||++++||.+|...+. .+|.|.|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999765 569999999999999987654 5999999999999999999999999999999996
Q ss_pred -CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccc
Q 001297 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKT 330 (1105)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~ 330 (1105)
.++||+|+++..|.++++++.+|..|..+|+++.|+||.+|||||+||+|+|.+.+.... .+..++|.
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~--~~~~gkLy--------- 233 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK--RKLSGKLY--------- 233 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch--hhccccEE---------
Confidence 678999999999999999999999999999999999999999999999999999875442 34556665
Q ss_pred cccccccccc---ccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCC
Q 001297 331 AYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 407 (1105)
Q Consensus 331 ~~lvDLa~s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~ 407 (1105)
||||+|++ ++|+.|.-+.|+++||+||+|||+||++|+++...|||||||||||||||+|||||+|.+|+|++|+
T Consensus 234 --LVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPs 311 (607)
T KOG0240|consen 234 --LVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 311 (607)
T ss_pred --EEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCc
Confidence 99999985 5888899999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHH
Q 001297 408 SSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREI 450 (1105)
Q Consensus 408 ~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei 450 (1105)
..+..||.+||+|++|||.|+|.+.+|...+.+.+.++|..+-
T Consensus 312 s~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~k 354 (607)
T KOG0240|consen 312 SLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKK 354 (607)
T ss_pred cccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887776553
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-79 Score=711.51 Aligned_cols=350 Identities=39% Similarity=0.611 Sum_probs=317.5
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecC---------CCCCcceeeceecCCC-------CChhHHHhhhh
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE---------YNPATAYAFDRVFGPH-------ANSQEVYDVAA 162 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~---------~~~~~~f~FD~VF~~~-------~tq~~Vy~~~~ 162 (1105)
..+|+|+|||||++.+|+....++++.+++...+.+. .++.++|.||++|++. +.|++||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4689999999999999999888888888877554332 2567899999999876 57999999999
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc--CCCceEEEEEeeeeeecceeeeccCC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~p 240 (1105)
.-+|+++|+|||+||||||||||||||||+|..++||||||.+..||..|.. .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999975 45678999999999999999999999
Q ss_pred CC--CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecC--CCCCCcce
Q 001297 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGV 315 (1105)
Q Consensus 241 ~~--~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~--~~~~~~~~ 315 (1105)
.+ +.++++++. .|.||.||++..|.|++|+-.+|..|+++|+++.|+||..|||||+||.|.|.+.- ...+..+.
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 79999999999999999999999999999999999999999999999999998863 33344555
Q ss_pred Eeeeeehhhhhcccccccccccccc---ccccccccccccchhhhcHHHHHHHHHHhhc-----CCCCcccCCCCccchh
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRL 387 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~-----~k~~hvPyRdSkLTrL 387 (1105)
..+++. ||||+|++ ++++.|.|++||++||+||++||.||++|++ ++.++||||||.||||
T Consensus 243 Kvskls-----------lVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwL 311 (1714)
T KOG0241|consen 243 KVSKLS-----------LVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWL 311 (1714)
T ss_pred heeeee-----------EEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHH
Confidence 667777 99999976 4788899999999999999999999999987 3456999999999999
Q ss_pred cccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 001297 388 LQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQL 460 (1105)
Q Consensus 388 LqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l 460 (1105)
|||+|||||+|+||+||||++++|+|||+|||||.|||+|+|++.+|+.... ..|++++.|+..|+.+|.+.
T Consensus 312 LkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 312 LKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred HHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999986544 47899999999999999873
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.3e-77 Score=682.47 Aligned_cols=316 Identities=42% Similarity=0.652 Sum_probs=282.7
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEE
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIf 178 (1105)
++|+|+|||||+.+.|...+...++. .++..++.. ..+.+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWH-SHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEee-CCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 47999999999999987655544443 334444433 2346899999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCCC--------CCCchhHHHHHHHHhhccC-----CCceEEEEEeeeeeecceeeeccCCCCCcc
Q 001297 179 AYGVTSSGKTHTMHGDQN--------SPGIIPLAIKDVFSIIQDT-----PGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1105)
Q Consensus 179 aYGqTGSGKTyTm~G~~~--------~~GIipra~~~LF~~i~~~-----~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l 245 (1105)
|||||||||||||+|+.. ++|||||++++||..+... .+..|.|+|||+|||||+|||||+|....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 999999999999999763 6899999999999998643 356899999999999999999999998899
Q ss_pred ceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhh
Q 001297 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF 324 (1105)
Q Consensus 246 ~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~ 324 (1105)
.|++++ .|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|.+............++|.
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~--- 236 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLN--- 236 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEE---
Confidence 999998 6799999999999999999999999999999999999999999999999999987655444455667787
Q ss_pred hhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhc---CCCCcccCCCCccchhcccCCCCCccc
Q 001297 325 FLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSE---GKASHVPYRDSKLTRLLQSSLSGHGHV 398 (1105)
Q Consensus 325 ~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~---~k~~hvPyRdSkLTrLLqdsLgGnskt 398 (1105)
||||||+++ +++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|
T Consensus 237 --------~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t 308 (337)
T cd01373 237 --------LVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKT 308 (337)
T ss_pred --------EEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceE
Confidence 999999876 556789999999999999999999999975 346799999999999999999999999
Q ss_pred eeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 399 SLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 399 ~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
+|||||||+..+++||++||+||.|||+|
T Consensus 309 ~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 309 TIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.2e-76 Score=673.58 Aligned_cols=316 Identities=42% Similarity=0.697 Sum_probs=287.1
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEee-cCCEEEecCC-------------CCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNEY-------------NPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~i~~~~~-------------~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV 166 (1105)
+|+|+|||||+++.|...+...+|.. ++..++.... ...+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 59999999999999987777666554 4444444322 235789999999999999999999999999
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCCCCcc
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~~~~l 245 (1105)
+++++|||+||||||||||||||||+|+..++|||||++++||+.++... +..|.|+|||+|||||+|||||++....+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67999999999999999999999988899
Q ss_pred ceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-CcceEeeeeehh
Q 001297 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGVIFSQLVRW 323 (1105)
Q Consensus 246 ~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~~~~s~l~~~ 323 (1105)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.+.. ......++|.
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~-- 238 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS-- 238 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE--
Confidence 999999 678999999999999999999999999999999999999999999999999998876532 2345667777
Q ss_pred hhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCC--CCcccCCCCccchhcccCCCCCccc
Q 001297 324 FFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHV 398 (1105)
Q Consensus 324 ~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k--~~hvPyRdSkLTrLLqdsLgGnskt 398 (1105)
||||||+++ ++..|.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|
T Consensus 239 ---------~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t 309 (338)
T cd01370 239 ---------LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKT 309 (338)
T ss_pred ---------EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeE
Confidence 999999875 56678999999999999999999999999876 3799999999999999999999999
Q ss_pred eeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 399 SLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 399 ~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
+|||||||+..+++||++||+||+|||+|
T Consensus 310 ~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 310 VMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4.1e-74 Score=658.58 Aligned_cols=310 Identities=39% Similarity=0.612 Sum_probs=276.9
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEE-eecCCEEEecC-------------CCCCcceeeceecCCCCChhHHHhhhhHHH
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNE-------------YNPATAYAFDRVFGPHANSQEVYDVAARPV 165 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~i~~~~-------------~~~~~~f~FD~VF~~~~tq~~Vy~~~~~pl 165 (1105)
++|+|+|||||+.+.|...+...+| ..++.++.... ....+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999998766555444 34555554332 124568999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC---
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~--- 242 (1105)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.. |.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999998754
Q ss_pred ---CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC------CC
Q 001297 243 ---QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EY 312 (1105)
Q Consensus 243 ---~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~------~~ 312 (1105)
..+.|++|+ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|.+|||||+||+|.|.+.+... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999999 56899999999999999999999999999999999999999999999999998876432 12
Q ss_pred cceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC-----CCCcccCCCCcc
Q 001297 313 DGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----KASHVPYRDSKL 384 (1105)
Q Consensus 313 ~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~-----k~~hvPyRdSkL 384 (1105)
.....++|. ||||||+++ +++.|.+++|+.+||+||++|++||.+|++. +..|||||||||
T Consensus 236 ~~~~~s~l~-----------~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkL 304 (345)
T cd01368 236 DQITVSQLS-----------LVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKL 304 (345)
T ss_pred CceEEEEEE-----------EEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHH
Confidence 345567777 999999875 5678999999999999999999999999873 467999999999
Q ss_pred chhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhc
Q 001297 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425 (1105)
Q Consensus 385 TrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak 425 (1105)
|+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 305 T~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 305 THLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.6e-74 Score=659.09 Aligned_cols=324 Identities=37% Similarity=0.585 Sum_probs=293.6
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCC-------CCCcceeeceecCCC-------CChhHHHhhhhHHH
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-------NPATAYAFDRVFGPH-------ANSQEVYDVAARPV 165 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~-------~~~~~f~FD~VF~~~-------~tq~~Vy~~~~~pl 165 (1105)
++|+|+|||||++..|...+...++..++..+.+... .....|.||+|||++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999888887777766666554332 246789999999999 99999999999999
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC--CceEEEEEeeeeeecceeeeccCCCC-
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPTG- 242 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~p~~- 242 (1105)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999997654 46899999999999999999999874
Q ss_pred --CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC--CCcceEe
Q 001297 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIF 317 (1105)
Q Consensus 243 --~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~--~~~~~~~ 317 (1105)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|.|.+..... .......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 689999998 68999999999999999999999999999999999999999999999999999876543 2334566
Q ss_pred eeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC-------CCCcccCCCCccchh
Q 001297 318 SQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG-------KASHVPYRDSKLTRL 387 (1105)
Q Consensus 318 s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~-------k~~hvPyRdSkLTrL 387 (1105)
++|. ||||+|+++ .+..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+|
T Consensus 241 s~l~-----------~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~l 309 (356)
T cd01365 241 SKIS-----------LVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWL 309 (356)
T ss_pred EEEE-----------eeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHH
Confidence 7777 999999875 5567889999999999999999999999874 357999999999999
Q ss_pred cccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001297 388 LQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 434 (1105)
Q Consensus 388 LqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n 434 (1105)
|+|+||||++|+||+||+|...+++||++||+||.|+++|++.|++|
T Consensus 310 L~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 310 LKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999999875
No 12
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.9e-72 Score=640.11 Aligned_cols=315 Identities=61% Similarity=0.957 Sum_probs=290.7
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecCC-EEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEE
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfa 179 (1105)
+|+|+||+||+...|.. +....|..+++ +++..+....+.|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999998873 44556665555 67666666788999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCCCccceeecCC-CcEeeC
Q 001297 180 YGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GTYVEG 258 (1105)
Q Consensus 180 YGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~~-g~~v~g 258 (1105)
||||||||||||+|+..++|||||++++||..+...++..|.|+|||+|||||+|||||+|....+++++++. |++|.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 9999999999999999999999999999999998888889999999999999999999999988999999985 899999
Q ss_pred ceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC-CCcceEeeeeehhhhhccccccccccc
Q 001297 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLVRWFFLSVKTAYLFQLY 337 (1105)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-~~~~~~~s~l~~~~~~~~~~~~lvDLa 337 (1105)
++++.|.|+++++.+|..|.++|++++|.+|.+|||||+||+|+|.+...+. ..+....++|. ||||+
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~-----------~vDLA 228 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLN-----------LIDLA 228 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEE-----------EEECC
Confidence 9999999999999999999999999999999999999999999999887554 23456677887 99999
Q ss_pred cccccccc--cccccccchhhhcHHHHHHHHHHhhcCC-CCcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHH
Q 001297 338 ESSKTETT--GLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 414 (1105)
Q Consensus 338 ~s~k~~~~--g~r~~E~~~INkSL~aLg~VI~aLs~~k-~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ET 414 (1105)
|+++.... |.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||+|...+++||
T Consensus 229 GsE~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eT 308 (321)
T cd01374 229 GSERASQTGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEET 308 (321)
T ss_pred CCCccccCCCCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 98875544 8999999999999999999999999976 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 001297 415 HNTLKFASRAKRV 427 (1105)
Q Consensus 415 lsTL~fA~rak~I 427 (1105)
++||+||+||++|
T Consensus 309 l~TL~~a~r~~~i 321 (321)
T cd01374 309 LNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.8e-72 Score=639.89 Aligned_cols=307 Identities=36% Similarity=0.583 Sum_probs=277.4
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEeecCC-EEEecC---------CCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~i~~~~---------~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
++|+|+|||||+.+.|...+...++..++. ++.+.. ......|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999987666555555553 443331 1125789999999999999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCCCccceee
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRE 249 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ire 249 (1105)
++|||+||||||||||||||||+|+..++|||||++++||+.++..+ ..|.|+|||+|||||.|+|||++ ...+.|++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999998655 68999999999999999999998 56799999
Q ss_pred cC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcc
Q 001297 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSV 328 (1105)
Q Consensus 250 d~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~ 328 (1105)
++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|..... ....++|.
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~------- 226 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----NKLLGKLS------- 226 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----CeeEEEEE-------
Confidence 98 568999999999999999999999999999999999999999999999999998764 33556776
Q ss_pred ccccccccccccccc----cccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeee
Q 001297 329 KTAYLFQLYESSKTE----TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTV 404 (1105)
Q Consensus 329 ~~~~lvDLa~s~k~~----~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~I 404 (1105)
||||+|+++.. ..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||
T Consensus 227 ----~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~v 301 (322)
T cd01367 227 ----FIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATI 301 (322)
T ss_pred ----EeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEe
Confidence 99999998743 457889999999999999999999999876 699999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q 001297 405 TPASSSMEETHNTLKFASRAK 425 (1105)
Q Consensus 405 sP~~~~~~ETlsTL~fA~rak 425 (1105)
||+..+++||++||+||+|+|
T Consensus 302 sp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 302 SPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999986
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.5e-72 Score=639.72 Aligned_cols=317 Identities=40% Similarity=0.666 Sum_probs=286.4
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEee--cCCEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~--~~~~i~~~~~-----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G 172 (1105)
++|+|+|||||+++.|...+...++.. +...+..... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 479999999999999987776555543 3334433221 356789999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCccccCCCCC---CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC-Ccccee
Q 001297 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~G~~~---~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~-~~l~ir 248 (1105)
||+||||||||||||||||+|+.. .+|||||++++||+.+...++..|.|+|||+|||||+|+|||++.. ..+.|+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999887778999999999999999999999876 689999
Q ss_pred ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC-CCcceEeeeeehhhhh
Q 001297 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLVRWFFL 326 (1105)
Q Consensus 249 ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-~~~~~~~s~l~~~~~~ 326 (1105)
+++ .|++|.|++++.|.|++++..+|..|..+|.++.|.+|..|||||+||+|+|++.+.+. ....+..++|.
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~----- 235 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLN----- 235 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEE-----
Confidence 998 48899999999999999999999999999999999999999999999999999877643 22345567777
Q ss_pred ccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEee
Q 001297 327 SVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 403 (1105)
Q Consensus 327 ~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~ 403 (1105)
||||+|+++ ++..|.+++|+..||+||.+|++||.+|++++..||||||||||+||+|+|||||+|+||+|
T Consensus 236 ------~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~ 309 (333)
T cd01371 236 ------LVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCAN 309 (333)
T ss_pred ------EEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEE
Confidence 999999875 45678899999999999999999999999988789999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccc
Q 001297 404 VTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 404 IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
|+|...+++||++||+||+|||+|
T Consensus 310 vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 310 IGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred eCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999987
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.4e-71 Score=640.65 Aligned_cols=323 Identities=38% Similarity=0.606 Sum_probs=288.1
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEeec--CCEEEecCC----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~--~~~i~~~~~----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~ 173 (1105)
.+|+|+|||||+.+.|...+...++..+ +..+..... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999776665555443 344444332 2567899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCC-
Q 001297 174 NGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT- 241 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G~~~-----------~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~- 241 (1105)
|+||||||||||||||||+|+.. .+|||||++.+||+.+... +..|.|+|||+|||||+|||||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 99999999999999999999743 4899999999999999865 6789999999999999999999987
Q ss_pred --CCccceeec---CCCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-Ccce
Q 001297 242 --GQNLRVRED---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1105)
Q Consensus 242 --~~~l~ired---~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~~ 315 (1105)
..+++++++ ..|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+...... ....
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 578999999 3689999999999999999999999999999999999999999999999999998765432 2334
Q ss_pred Eeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCC
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSL 392 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsL 392 (1105)
..++|. ||||+|+++ .++.|.+.+|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|
T Consensus 241 ~~s~l~-----------~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~L 308 (352)
T cd01364 241 KIGKLN-----------LVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSL 308 (352)
T ss_pred EEEEEE-----------EEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhc
Confidence 567777 999999875 45667799999999999999999999999865 699999999999999999
Q ss_pred CCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001297 393 SGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 435 (1105)
Q Consensus 393 gGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~ 435 (1105)
||||+|+||+||+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 309 gg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 309 GGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999998884
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.6e-71 Score=630.86 Aligned_cols=315 Identities=43% Similarity=0.676 Sum_probs=287.3
Q ss_pred CCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEE
Q 001297 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1105)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIf 178 (1105)
++|+|+|||||+.+.|...+...++. .++.++.+......+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 58999999999999987666554444 44456666666677899999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCCC---CCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCCCCccceeecC-CC
Q 001297 179 AYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QG 253 (1105)
Q Consensus 179 aYGqTGSGKTyTm~G~~~---~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~-~g 253 (1105)
|||||||||||||+|+.. .+|||||++++||+.+.... +..|.|++||+|||||.|||||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999999988 89999999999999997654 45899999999999999999999988899999998 68
Q ss_pred cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccccccc
Q 001297 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYL 333 (1105)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~l 333 (1105)
++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+.+... .....++|. |
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l~-----------~ 228 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKLF-----------L 228 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEEE-----------E
Confidence 999999999999999999999999999999999999999999999999999876443 234567777 9
Q ss_pred cccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCC
Q 001297 334 FQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS 410 (1105)
Q Consensus 334 vDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~ 410 (1105)
|||+|+++ .+..|.+++|+..||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||+|+..+
T Consensus 229 VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~ 308 (325)
T cd01369 229 VDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYN 308 (325)
T ss_pred EECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCcccc
Confidence 99999875 457788999999999999999999999999877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 001297 411 MEETHNTLKFASRAKRV 427 (1105)
Q Consensus 411 ~~ETlsTL~fA~rak~I 427 (1105)
++||++||+||+|||+|
T Consensus 309 ~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 309 ESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.8e-71 Score=626.49 Aligned_cols=307 Identities=33% Similarity=0.543 Sum_probs=275.4
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecC-----CEEEecCC---CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADG-----DKIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~-----~~i~~~~~---~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G 172 (1105)
+|+|+|||||+.+.|.... .++...++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS-SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCC-ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999885332 33333333 23433322 246789999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCCCccceeecC-
Q 001297 173 VNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA- 251 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~- 251 (1105)
||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|+|||+|||||.|||||++....+.|++++
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 99999999999999999999999999999999999999887543 6799999999999999999999988899999997
Q ss_pred CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccccc
Q 001297 252 QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTA 331 (1105)
Q Consensus 252 ~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~ 331 (1105)
.|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+.+.+ ....++|.
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~---------- 224 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQLEGKLN---------- 224 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ceEEEEEE----------
Confidence 4679999999999999999999999999999999999999999999999999887543 24567777
Q ss_pred cccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCC
Q 001297 332 YLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPAS 408 (1105)
Q Consensus 332 ~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~ 408 (1105)
||||+|+++ ++..|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||..
T Consensus 225 -~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~ 302 (319)
T cd01376 225 -LIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPER 302 (319)
T ss_pred -EEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCch
Confidence 999999875 56788999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001297 409 SSMEETHNTLKFASRAK 425 (1105)
Q Consensus 409 ~~~~ETlsTL~fA~rak 425 (1105)
.+++||++||+||+|||
T Consensus 303 ~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 303 SFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 99999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.7e-70 Score=627.75 Aligned_cols=314 Identities=41% Similarity=0.644 Sum_probs=282.1
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeec--CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEE
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~--~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIf 178 (1105)
+|+|+||+||+.+.|...+....+..+ ...++.. ..+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999999999776665555432 2344432 25789999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCC------CCCCchhHHHHHHHHhhccCCC-ceEEEEEeeeeeecceeeeccCCC---CCcccee
Q 001297 179 AYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPT---GQNLRVR 248 (1105)
Q Consensus 179 aYGqTGSGKTyTm~G~~------~~~GIipra~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~p~---~~~l~ir 248 (1105)
|||||||||||||+|+. .++|||||++++||+.++.... ..|.|.|||+|||||.|||||++. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999974 5799999999999999987654 789999999999999999999986 5789999
Q ss_pred ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC--------CCcceEeee
Q 001297 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--------EYDGVIFSQ 319 (1105)
Q Consensus 249 ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~--------~~~~~~~s~ 319 (1105)
+++ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+. .......++
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 998 67899999999999999999999999999999999999999999999999999887642 223455677
Q ss_pred eehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCC--CcccCCCCccchhcccCCCC
Q 001297 320 LVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSG 394 (1105)
Q Consensus 320 l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~--~hvPyRdSkLTrLLqdsLgG 394 (1105)
|. ||||+|+++ ++..|.+++|+..||+||++|++||.+|+.+.. .||||||||||+||+|+|||
T Consensus 239 l~-----------~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg 307 (341)
T cd01372 239 FH-----------FVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGG 307 (341)
T ss_pred EE-----------EEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCC
Confidence 77 999999875 567889999999999999999999999998663 79999999999999999999
Q ss_pred CccceeEeeeCCCCCCHHHHHHHHHHHHHhcccc
Q 001297 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428 (1105)
Q Consensus 395 nskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~ 428 (1105)
|++|+||+||||...+++||++||+||+|||+|+
T Consensus 308 ~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 308 NSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999985
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3e-70 Score=624.64 Aligned_cols=310 Identities=39% Similarity=0.594 Sum_probs=277.1
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecCCEEEe-----------cCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-----------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~-----------~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
+|+|+||+||+...+. ..+.+..++..+.. +.......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987442 23444445444322 12234567999999999 999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCC---CCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC----
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~---~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~---- 242 (1105)
++|||+||||||||||||||||+|+. .++|||||++++||+.++..++..|.|+|||+|||||+|||||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999976 47899999999999999988888999999999999999999999874
Q ss_pred --CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeee
Q 001297 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1105)
Q Consensus 243 --~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~ 319 (1105)
+.+.|++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+..........++
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~ 236 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSK 236 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEE
Confidence 678999997 67899999999999999999999999999999999999999999999999999885555545566778
Q ss_pred eehhhhhcccccccccccccccc---ccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCc
Q 001297 320 LVRWFFLSVKTAYLFQLYESSKT---ETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 396 (1105)
Q Consensus 320 l~~~~~~~~~~~~lvDLa~s~k~---~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGns 396 (1105)
|. ||||+|+++. +..|.+++|+.+||+||++|++||.+|+.++..||||||||||+||+|+|||||
T Consensus 237 l~-----------~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~ 305 (334)
T cd01375 237 LN-----------LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNC 305 (334)
T ss_pred EE-----------EEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCc
Confidence 87 9999998764 457888999999999999999999999998768999999999999999999999
Q ss_pred cceeEeeeCCCCCCHHHHHHHHHHHHHhc
Q 001297 397 HVSLICTVTPASSSMEETHNTLKFASRAK 425 (1105)
Q Consensus 397 kt~mI~~IsP~~~~~~ETlsTL~fA~rak 425 (1105)
+|+|||||||+..+++||++||+||+|++
T Consensus 306 ~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 306 KTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.3e-68 Score=608.88 Aligned_cols=316 Identities=39% Similarity=0.599 Sum_probs=283.6
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecC--CEEEecCC-CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCe
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY-NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~i~~~~~-~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~ 175 (1105)
+|+|+|+||+||+.+.|......++...++ ..+..... ...+.|.||+||+++++|++||+. +.|+|+.+++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999998876333333333333 45555443 567889999999999999999997 58999999999999
Q ss_pred EEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC--CceEEEEEeeeeeecceeeeccCCC---CCccceeec
Q 001297 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT---GQNLRVRED 250 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~p~---~~~l~ired 250 (1105)
||||||+|||||||||+|+..++|||||++++||..++... +..|.|.+||+|||||+|||||++. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 99999999999999999999999999999999999997654 5789999999999999999999986 678999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccc
Q 001297 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVK 329 (1105)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~ 329 (1105)
+ .|++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|+|.+.+... .....++|.
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~--~~~~~s~l~-------- 229 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT--GEQTRGKLN-------- 229 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC--CcEEEEEEE--------
Confidence 9 67899999999999999999999999999999999999999999999999999876542 345567777
Q ss_pred cccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCC
Q 001297 330 TAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTP 406 (1105)
Q Consensus 330 ~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP 406 (1105)
||||+|+++ .++.|.+++|+..||+||++|++||.+|+.+ ..||||||||||+||+|+||||++|+|||||||
T Consensus 230 ---~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp 305 (329)
T cd01366 230 ---LVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISP 305 (329)
T ss_pred ---EEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCC
Confidence 999999875 4567889999999999999999999999986 569999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccccc
Q 001297 407 ASSSMEETHNTLKFASRAKRVEI 429 (1105)
Q Consensus 407 ~~~~~~ETlsTL~fA~rak~I~~ 429 (1105)
...+++||++||+||+|+++|++
T Consensus 306 ~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 306 LESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred chhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999976
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6e-69 Score=649.52 Aligned_cols=324 Identities=37% Similarity=0.521 Sum_probs=285.7
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEeecC--CEEEecCCCCC----cceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPA----TAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~i~~~~~~~~----~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
.+.+|||+|+|||||+.+.+.......+...++ ..++....... +.|.||+||+|.++|++||. -+.|+|.++
T Consensus 310 ~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~ 388 (670)
T KOG0239|consen 310 LELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFE-EVSPLVQSA 388 (670)
T ss_pred HHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHH-HHHHHHHHH
Confidence 356899999999999999987654333333332 23333333222 25999999999999999998 678999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCC-CCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCC--CCcc
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHG-DQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPT--GQNL 245 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G-~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~--~~~l 245 (1105)
|+|||+||||||||||||||||.| +++++|||||++.+||..+.... ++.|.+.+||+|||||.|+|||++. ...+
T Consensus 389 lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~ 468 (670)
T KOG0239|consen 389 LDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKL 468 (670)
T ss_pred hcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccce
Confidence 999999999999999999999999 79999999999999999997543 6899999999999999999999887 4789
Q ss_pred ceeecCC-CcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhh
Q 001297 246 RVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF 324 (1105)
Q Consensus 246 ~ired~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~ 324 (1105)
.|++++. +.+|.+++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+... +....+.|+
T Consensus 469 ~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t--~~~~~g~l~--- 543 (670)
T KOG0239|consen 469 EIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT--GIRVTGVLN--- 543 (670)
T ss_pred eEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc--cccccccee---
Confidence 9999985 5789999999999999999999999999999999999999999999999998764322 334456666
Q ss_pred hhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeE
Q 001297 325 FLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 401 (1105)
Q Consensus 325 ~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI 401 (1105)
||||||+++ ++.+|.|++|+.+||+||++||+||.||+. +..||||||||||+||||+|||++||+|+
T Consensus 544 --------LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmf 614 (670)
T KOG0239|consen 544 --------LVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMF 614 (670)
T ss_pred --------EeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeE
Confidence 999999987 899999999999999999999999999998 55799999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001297 402 CTVTPASSSMEETHNTLKFASRAKRVEIYASRN 434 (1105)
Q Consensus 402 ~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n 434 (1105)
++|||...++.||+++|+||.|++.+...+.+-
T Consensus 615 v~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 615 VNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred EEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 999999999999999999999999998877654
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.1e-67 Score=599.35 Aligned_cols=323 Identities=44% Similarity=0.674 Sum_probs=292.1
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecCC---EEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADGD---KIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~---~i~~~~---~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n 174 (1105)
+|+|+|||||+...|...+....|..++. .+.... ......|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 59999999999999877666655554333 454432 235678999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCCCCccceeecCC-
Q 001297 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ- 252 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~~- 252 (1105)
+||||||+|||||||||+|+..++|||||++++||..+.... +..|.|+|||+|||||.|+|||++....+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 999999999999999999999999999999999999997654 578999999999999999999999999999999985
Q ss_pred CcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccccc
Q 001297 253 GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAY 332 (1105)
Q Consensus 253 g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~ 332 (1105)
|+++.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+............++|.
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~----------- 229 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLN----------- 229 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEE-----------
Confidence 789999999999999999999999999999999999999999999999999977444444556677787
Q ss_pred ccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC-CCCcccCCCCccchhcccCCCCCccceeEeeeCCCC
Q 001297 333 LFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPAS 408 (1105)
Q Consensus 333 lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~-k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~ 408 (1105)
||||+|+++ .++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|..
T Consensus 230 ~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~ 309 (335)
T smart00129 230 LVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSL 309 (335)
T ss_pred EEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCc
Confidence 999999875 4467789999999999999999999999985 567999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccccccc
Q 001297 409 SSMEETHNTLKFASRAKRVEIYASRN 434 (1105)
Q Consensus 409 ~~~~ETlsTL~fA~rak~I~~~~~~n 434 (1105)
.+++||++||+||.++++|++.|++|
T Consensus 310 ~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 310 SNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999764
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-65 Score=586.24 Aligned_cols=313 Identities=44% Similarity=0.704 Sum_probs=282.6
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecC-CEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADG-DKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~i~~~~~-----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n 174 (1105)
+|+|+||+||+...|.. +...+|..++ +.+..... .....|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 59999999999987733 3334444444 55555432 34688999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC--CceEEEEEeeeeeecceeeeccCCC--CCccceeec
Q 001297 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT--GQNLRVRED 250 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~p~--~~~l~ired 250 (1105)
+||||||+|||||||||+|+..++|||||++++||..+.... +..|.|.+||+|||+|+|+|||++. ...+.|+++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 999999999999999999999999999999999999998765 5789999999999999999999997 889999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccc
Q 001297 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVK 329 (1105)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~ 329 (1105)
+ .|+++.|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|.|.+.+..........++|.
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~-------- 231 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLN-------- 231 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEE--------
Confidence 9 6789999999999999999999999999999999999999999999999999988765543346677777
Q ss_pred ccccccccccccc---ccccccccccchhhhcHHHHHHHHHHhhcCC-CCcccCCCCccchhcccCCCCCccceeEeeeC
Q 001297 330 TAYLFQLYESSKT---ETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVT 405 (1105)
Q Consensus 330 ~~~lvDLa~s~k~---~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k-~~hvPyRdSkLTrLLqdsLgGnskt~mI~~Is 405 (1105)
||||+|+++. +..|.+.+|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+
T Consensus 232 ---~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vs 308 (328)
T cd00106 232 ---LVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANIS 308 (328)
T ss_pred ---EEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeC
Confidence 9999998764 4578899999999999999999999999876 57999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 001297 406 PASSSMEETHNTLKFASRAK 425 (1105)
Q Consensus 406 P~~~~~~ETlsTL~fA~rak 425 (1105)
|...+++||++||+||+|||
T Consensus 309 p~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 309 PSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.7e-67 Score=597.09 Aligned_cols=310 Identities=45% Similarity=0.706 Sum_probs=274.7
Q ss_pred EeCCCChhhhccCCeEEEeecCC----EEE---ecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEE
Q 001297 107 RFRPLSEREFQRGDEIAWYADGD----KIV---RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1105)
Q Consensus 107 RvRP~~~~E~~~~~~~~~~~~~~----~i~---~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfa 179 (1105)
||||+++.|...+....+..... ... .........|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 99999999998888776654321 111 11233557899999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCC--CCCCCchhHHHHHHHHhhccCCC---ceEEEEEeeeeeecceeeeccCCC----CCccceeec
Q 001297 180 YGVTSSGKTHTMHGD--QNSPGIIPLAIKDVFSIIQDTPG---REFLLRVSYLEIYNEVINDLLDPT----GQNLRVRED 250 (1105)
Q Consensus 180 YGqTGSGKTyTm~G~--~~~~GIipra~~~LF~~i~~~~~---~~~~v~vS~lEIYnE~i~DLL~p~----~~~l~ired 250 (1105)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||.|||||+|. ...+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 89999999999999999986554 589999999999999999999987 357999999
Q ss_pred CC-C-cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCc--ceEeeeeehhhhh
Q 001297 251 AQ-G-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD--GVIFSQLVRWFFL 326 (1105)
Q Consensus 251 ~~-g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~--~~~~s~l~~~~~~ 326 (1105)
+. | ++|.|++++.|.++++++.+|..|..+|+++.|.+|..|||||+||+|.|.+........ ....++|.
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~----- 235 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLT----- 235 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEE-----
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeeccee-----
Confidence 96 6 899999999999999999999999999999999999999999999999999987665443 24667777
Q ss_pred ccccccccccccccccccc----cccccccchhhhcHHHHHHHHHHhhcC-CCCcccCCCCccchhcccCCCCCccceeE
Q 001297 327 SVKTAYLFQLYESSKTETT----GLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLI 401 (1105)
Q Consensus 327 ~~~~~~lvDLa~s~k~~~~----g~r~~E~~~INkSL~aLg~VI~aLs~~-k~~hvPyRdSkLTrLLqdsLgGnskt~mI 401 (1105)
||||+|+++.... |.+.+|+..||+||.+|++||.+|+.+ +..||||||||||+||+|+|||||+|+||
T Consensus 236 ------~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I 309 (335)
T PF00225_consen 236 ------FVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILI 309 (335)
T ss_dssp ------EEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEE
T ss_pred ------eeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeE
Confidence 9999998864433 567999999999999999999999997 56799999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 402 CTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 402 ~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
+||+|...+++||++||+||.++|+|
T Consensus 310 ~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 310 VCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-66 Score=582.26 Aligned_cols=316 Identities=35% Similarity=0.549 Sum_probs=275.9
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEEee-cCCEEEecC---------CCCCcceeeceecCCCCChhHHHhhhhHHHHH
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~i~~~~---------~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~ 167 (1105)
..+.|.|+||-||++..|....+..++.. ..+.+++.. |-..+.|.||++||+.++++.||..+++|||.
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~ 285 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVK 285 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHH
Confidence 34679999999999999987766544443 334333322 23456899999999999999999999999999
Q ss_pred HHhcCCCeEEEEeccCCCCCccccCCCCC------CCCchhHHHHHHHHhhccCC--CceEEEEEeeeeeecceeeeccC
Q 001297 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQN------SPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLD 239 (1105)
Q Consensus 168 ~~l~G~n~tIfaYGqTGSGKTyTm~G~~~------~~GIipra~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~ 239 (1105)
.+|+|.-+|+||||||||||||||.|+-. ..||.-++.+|+|..+.... ...+.|++||||||+.+|||||+
T Consensus 286 ~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~ 365 (676)
T KOG0246|consen 286 TIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLN 365 (676)
T ss_pred HHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhc
Confidence 99999999999999999999999999743 35999999999999987532 45789999999999999999999
Q ss_pred CCCCccceeecCC-CcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEee
Q 001297 240 PTGQNLRVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1105)
Q Consensus 240 p~~~~l~ired~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s 318 (1105)
+ ...|.+.||.+ .|.|.||++..|.+.++++.+|..|+..|+++.|..|..|||||+||+|.+..... ....+
T Consensus 366 ~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~-----~k~hG 439 (676)
T KOG0246|consen 366 D-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGE-----FKLHG 439 (676)
T ss_pred c-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCc-----ceeEe
Confidence 7 56799999985 47899999999999999999999999999999999999999999999999975321 24556
Q ss_pred eeehhhhhccccccccccccccc----cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCC
Q 001297 319 QLVRWFFLSVKTAYLFQLYESSK----TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG 394 (1105)
Q Consensus 319 ~l~~~~~~~~~~~~lvDLa~s~k----~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgG 394 (1105)
++. ||||||+++ +.+..++..||+.|||||+||..||++|...+ .|+|||.||||.+|+|||-|
T Consensus 440 KfS-----------lIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIG 507 (676)
T KOG0246|consen 440 KFS-----------LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIG 507 (676)
T ss_pred EEE-----------EEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcC
Confidence 666 999999865 45566788999999999999999999999866 59999999999999999999
Q ss_pred -CccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001297 395 -HGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYA 431 (1105)
Q Consensus 395 -nskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~ 431 (1105)
||+|+||+||||....++.||||||||+|+|......
T Consensus 508 enSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 508 ENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999876443
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-64 Score=599.73 Aligned_cols=337 Identities=37% Similarity=0.544 Sum_probs=295.6
Q ss_pred eCCCChhhhccCCeEEEe--ecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCC
Q 001297 108 FRPLSEREFQRGDEIAWY--ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSS 185 (1105)
Q Consensus 108 vRP~~~~E~~~~~~~~~~--~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGS 185 (1105)
|||+...|...|+..++. +....+++. ....|+||+||+....|.++|+.++.|+++.+|.|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999998888765443 333344433 346799999999999999999999999999999999999999999999
Q ss_pred CCccccCCC----CCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC--CccceeecCCC-cEeeC
Q 001297 186 GKTHTMHGD----QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQG-TYVEG 258 (1105)
Q Consensus 186 GKTyTm~G~----~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~--~~l~ired~~g-~~v~g 258 (1105)
||||||.+. .+..|||||+++++|..|.......|.|.|||+|||++.|+|||.|.. .++.+++ +.| +.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999886 344699999999999999988888999999999999999999999654 4577888 655 78999
Q ss_pred ceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccccccccccc
Q 001297 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYE 338 (1105)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~lvDLa~ 338 (1105)
++++.|.+..+++..|..|.-.|++++|+||..|||||+||+|.+++...... .....++|+ ||||+|
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-~s~~~sKlh-----------lVDLAG 224 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-RSSFCSKLH-----------LVDLAG 224 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-cchhhhhhh-----------eeeccc
Confidence 99999999999999999999999999999999999999999999987654332 224456777 999999
Q ss_pred cc---ccccccccccccchhhhcHHHHHHHHHHhhcCC-CCcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHH
Q 001297 339 SS---KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 414 (1105)
Q Consensus 339 s~---k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k-~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ET 414 (1105)
++ +++++|.|++||++||.+|++||+||++|.+.+ ..|||||||||||||||+||||+.|+||+||||+..+++||
T Consensus 225 SER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~Et 304 (913)
T KOG0244|consen 225 SERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQET 304 (913)
T ss_pred cccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhH
Confidence 86 488899999999999999999999999998753 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 415 HNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 461 (1105)
Q Consensus 415 lsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~ 461 (1105)
++||+||.||++|+|+|.+|. ......+..++.+|..|+.+|-..+
T Consensus 305 lnTl~ya~Rak~iknk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 305 LNTLRYADRAKQIKNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHhhHHHHhcccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998 2223456778888888888877654
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-64 Score=587.27 Aligned_cols=326 Identities=37% Similarity=0.592 Sum_probs=282.3
Q ss_pred CCCCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEe------------cCCCCCcceeeceecCCCCChhHHHhhhh
Q 001297 95 PQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVAA 162 (1105)
Q Consensus 95 ~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~------------~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~ 162 (1105)
+....+.|.|+||+||+.+.-.+.| ++...+..+++. +.....+.|.|-+||+|+++|.+||+.++
T Consensus 26 S~~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 26 SCESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred chhhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 4456788999999999986222222 222233333322 22334567999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc----------------------------
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD---------------------------- 214 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~---------------------------- 214 (1105)
.|+|.+++.|.|..+|+||.|||||||||+|++..+||+||++.-||..|+.
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988764
Q ss_pred ------------C-------------------------CCceEEEEEeeeeeecceeeeccCCCC-----Cc-cceeecC
Q 001297 215 ------------T-------------------------PGREFLLRVSYLEIYNEVINDLLDPTG-----QN-LRVREDA 251 (1105)
Q Consensus 215 ------------~-------------------------~~~~~~v~vS~lEIYnE~i~DLL~p~~-----~~-l~ired~ 251 (1105)
. .+..|.|+|||+|||||.|||||.+.+ +. ..+++|.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT 263 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc
Confidence 0 234589999999999999999998653 23 5677888
Q ss_pred CC-cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccc
Q 001297 252 QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKT 330 (1105)
Q Consensus 252 ~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~ 330 (1105)
+| +||.|+++|.|.|.+|++++|..|.++|++++|..|..|||||+||+|.|.+.........++.|.|.
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqls--------- 334 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLS--------- 334 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeee---------
Confidence 65 79999999999999999999999999999999999999999999999999988766555667788888
Q ss_pred ccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC----CCCcccCCCCccchhcccCCCCCccceeEee
Q 001297 331 AYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG----KASHVPYRDSKLTRLLQSSLSGHGHVSLICT 403 (1105)
Q Consensus 331 ~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~----k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~ 403 (1105)
||||||+++ ++++|.|++||++||.||++||+||.+|..+ ...+|||||||||++++.+|.|..+++||+|
T Consensus 335 --LvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~ 412 (809)
T KOG0247|consen 335 --LVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVC 412 (809)
T ss_pred --eeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEe
Confidence 999999876 7789999999999999999999999999763 2368999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccccc
Q 001297 404 VTPASSSMEETHNTLKFASRAKRVEIYASR 433 (1105)
Q Consensus 404 IsP~~~~~~ETlsTL~fA~rak~I~~~~~~ 433 (1105)
|+|...+|+|+++.|+||.-|..|.+...+
T Consensus 413 vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 413 VNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred cCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 999999999999999999999999766555
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-59 Score=564.44 Aligned_cols=342 Identities=43% Similarity=0.644 Sum_probs=288.6
Q ss_pred CCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeE
Q 001297 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~t 176 (1105)
..-.+++++++..|-...+ ..+.......+.........|.||+||++.++|++||+..+.|+++.++.|||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred eeecCceEEEeecCCCcch------heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 3456789999999964332 2222222222111111256799999999999999999999999999999999999
Q ss_pred EEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecceeeeccCCCCCccceeecC-CCc
Q 001297 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGT 254 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~-~g~ 254 (1105)
|||||||||||||||.|+...+||||+++.+||+.+.... +..|.|.+||+|||||+++|||.|....+.++++. .|+
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v 172 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCce
Confidence 9999999999999999999999999999999999997544 46799999999999999999999988778899987 689
Q ss_pred EeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccccccc
Q 001297 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLF 334 (1105)
Q Consensus 255 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~lv 334 (1105)
+|.|++++.|.+.++++.+|..|..+|+++.|.+|..|||||+||+|.+.+.+...... ..++++ +|
T Consensus 173 ~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~--~~~~l~-----------lv 239 (568)
T COG5059 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTS--ETSKLS-----------LV 239 (568)
T ss_pred EeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccce--ecceEE-----------EE
Confidence 99999999999999999999999999999999999999999999999999876544321 224566 99
Q ss_pred cccccccccc---ccccccccchhhhcHHHHHHHHHHhhc-CCCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCC
Q 001297 335 QLYESSKTET---TGLRRKEGSYINKSLLTLGTVIGKLSE-GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS 410 (1105)
Q Consensus 335 DLa~s~k~~~---~g~r~~E~~~INkSL~aLg~VI~aLs~-~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~ 410 (1105)
||+|+++... .+.|++||..||+||++||+||.+|.+ ++..|||||+||||||||++|||+++|+|||||+|...+
T Consensus 240 DLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~ 319 (568)
T COG5059 240 DLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNS 319 (568)
T ss_pred eeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCc
Confidence 9999887555 688999999999999999999999997 445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 001297 411 MEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEEL 457 (1105)
Q Consensus 411 ~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el 457 (1105)
+++|.+||+||.||+.|++.+..|...+....+..+...+...+...
T Consensus 320 ~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 366 (568)
T COG5059 320 FEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI 366 (568)
T ss_pred hHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999853222223444444444444433
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=9.8e-46 Score=389.39 Aligned_cols=175 Identities=38% Similarity=0.626 Sum_probs=160.5
Q ss_pred HHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeee
Q 001297 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVIND 236 (1105)
Q Consensus 157 Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~D 236 (1105)
||+.++ |+|+.+++|||+||||||||||||||||+|+..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred ccCCCCCccceeecCCCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-Ccce
Q 001297 237 LLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1105)
Q Consensus 237 LL~p~~~~l~ired~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~~ 315 (1105)
++.++..|..+|.++.|.+|..|||||+||+|+|.+.+.... ....
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~ 104 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQP 104 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccce
Confidence 788999999999999999999999999999999998765432 2345
Q ss_pred Eeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCC
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSL 392 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsL 392 (1105)
..++|. ||||+|+++ .+..|.+++|+.+||+||++|++||.+|+++. .||||||||||+||||+|
T Consensus 105 ~~s~l~-----------lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L 172 (186)
T cd01363 105 KVGKIN-----------LVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSL 172 (186)
T ss_pred eeeeEE-----------EEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhc
Confidence 567777 999999875 45667889999999999999999999999854 699999999999999999
Q ss_pred CCCccceeEeeeCC
Q 001297 393 SGHGHVSLICTVTP 406 (1105)
Q Consensus 393 gGnskt~mI~~IsP 406 (1105)
||||+|+||+||||
T Consensus 173 ~g~~~t~~i~~vsP 186 (186)
T cd01363 173 GGNSRTLMVACISP 186 (186)
T ss_pred CCCCeEEEEEEeCc
Confidence 99999999999998
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.9e-13 Score=161.66 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHH-hHHHHHHHHh-hhhhHHHHHH-HHHHHHHHHHHh---hcc-------C---CCCCC
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSA-DNRILQEQLQ-NKCSENKKLQ-EKVNLLEQQLAC---QNG-------D---KSAGS 752 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~a-e~~~lqeqL~-~a~~e~~~l~-~kl~~lk~~l~~---~~e-------~---~~~~~ 752 (1105)
.-.+..++..++++..++++|++ +...+.++|- ....++.+++ ..++...++..+ .++ + -...+
T Consensus 377 ~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~ 456 (698)
T KOG0978|consen 377 ELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEM 456 (698)
T ss_pred HHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455577788888888888855 5555555544 3445555555 233444442211 111 0 11223
Q ss_pred CCCCCcHHHHHHHHHHHHhhHHHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001297 753 SGQGTSDEYVDELRKKVQSQETENEKL-----------KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 821 (1105)
Q Consensus 753 ~~~~~~ee~~~el~~~l~~q~~E~e~l-----------k~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l 821 (1105)
..++.+.+++.+....+-.|..|-+++ .+.+.+|.+++..|..++..|..-.......+..+..|+..|
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666777666666666655554 556666777777777777776665555555555565555555
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 001297 822 AGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 822 ~~ev~kL~~~N~qL~~El~~~k 843 (1105)
...+.++.++...+..-++..+
T Consensus 537 t~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555544444444
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.40 E-value=1e-11 Score=153.38 Aligned_cols=276 Identities=18% Similarity=0.217 Sum_probs=174.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhh-
Q 001297 647 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS- 725 (1105)
Q Consensus 647 ~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~- 725 (1105)
+..++++|++++++++++++.++++..... +....+..++.+|++....+..++++...|..-..+..-
T Consensus 506 ~~~~~~~l~~~~~~~~eele~~q~~~~~~~----------~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~ 575 (1317)
T KOG0612|consen 506 EEAKKRKLEALVRQLEEELEDAQKKNDNAA----------DSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQ 575 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHH
Confidence 345788999999999999999977765322 345667788888888888877666655544443333322
Q ss_pred ------HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 001297 726 ------ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV---QSQETENEKLKLEHVQLSEENSGLHVQ 796 (1105)
Q Consensus 726 ------e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l---~~q~~E~e~lk~e~~~L~Ee~~~L~~e 796 (1105)
+..+++.++..|+.-...+.+. ......++.+.. ..=.+++..++.++..|.+.+..+..+
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~----------~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKE----------NKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 3333333333333322111110 000000000000 011344556666777777777777777
Q ss_pred HHHHHHHHhHHHHHHHHHHH---------HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhc--chh
Q 001297 797 NQKLAEEASYAKELASAAAV---------ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNG--VNR 861 (1105)
Q Consensus 797 ~~kL~~e~~~~k~la~a~~~---------qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi----q~v~~--~ar 861 (1105)
..++-++....-+.++..+- +++.+-.++.++.+++.++ +|. .-++++ +||++ ++|
T Consensus 646 l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~-------~~e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 646 LLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQ-------DKEAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-------hHHHHHHHHHHHhcccccHH
Confidence 66666654444444444333 3334444444444444444 222 225555 99999 899
Q ss_pred hhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHH
Q 001297 862 KYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKV-----EESK 936 (1105)
Q Consensus 862 ~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~-----ee~k 936 (1105)
+|+++++..+.++++.++++ .....+..|..++..+.+..+.+.++.+||+++.++...+.||..+- +.++
T Consensus 717 ~k~e~~~~~i~~e~e~L~~d----~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~E 792 (1317)
T KOG0612|consen 717 EKAENLLLEIEAELEYLSND----YKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLE 792 (1317)
T ss_pred HHHHHHHHHHHHHHHHHhhh----hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHH
Confidence 99999999999999999874 34455888999999999999999999999999999999999997222 3457
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhcCC
Q 001297 937 RREEALENDLANMWVLVAKLKKEVGS 962 (1105)
Q Consensus 937 k~~~~L~~EL~~m~~~~~kl~ke~~~ 962 (1105)
++...+..+| ..+++.++.
T Consensus 793 kq~~~~~~~l-------~~~K~~~e~ 811 (1317)
T KOG0612|consen 793 KQLKKLLDEL-------AELKKQLEE 811 (1317)
T ss_pred HHHHHHHHHH-------HHHHHHHHH
Confidence 7778887777 545555544
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.7e-13 Score=146.94 Aligned_cols=80 Identities=30% Similarity=0.673 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcCCCC----CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccc
Q 001297 1025 PKEEPLVARLKARMQEMKEKEQKYQGNGD----PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTK 1096 (1105)
Q Consensus 1025 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~ 1096 (1105)
.++..+++...+.++|+.+..+.....+. +++.+|+||+...++++++||||+|+|..|+..+ .+|||||++
T Consensus 255 ~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqp 334 (349)
T KOG4265|consen 255 LKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQP 334 (349)
T ss_pred eeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccc
Confidence 34456777888889999887755555444 6788999999999999999999999999998665 569999999
Q ss_pred ccceeecc
Q 001297 1097 ISDRLFAF 1104 (1105)
Q Consensus 1097 i~~~i~if 1104 (1105)
|...+.|+
T Consensus 335 i~~ll~i~ 342 (349)
T KOG4265|consen 335 IEELLEIY 342 (349)
T ss_pred hHhhheec
Confidence 99998876
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.4e-12 Score=103.52 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeeccC
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFAFT 1105 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~~i~if~ 1105 (1105)
.+|.||++++.+.||..|||+|+|..|+.+. ..||+||.+|..+|+.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 4799999999999999999999999997655 459999999999999884
No 34
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-10 Score=122.82 Aligned_cols=50 Identities=32% Similarity=0.895 Sum_probs=48.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1105 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1105 (1105)
...|.|||+.+++++|++|||++.|..|+.+|..|||||+.|.++++||.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999999999999999994
No 35
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=1.2e-09 Score=90.47 Aligned_cols=44 Identities=43% Similarity=1.185 Sum_probs=38.2
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1100 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 1100 (1105)
..|.||++++.+++++||||.+||..|+... ..||+||++|.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4799999999999999999999999998766 7899999999763
No 36
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.6e-09 Score=119.24 Aligned_cols=54 Identities=33% Similarity=0.910 Sum_probs=49.5
Q ss_pred CCCcccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001297 1052 GDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1105 (1105)
Q Consensus 1052 ~~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1105 (1105)
..+-+..|+||.+++.+++|+||||+|+|..|+....+||+||..|...+++|.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 344566899999999999999999999999999999999999999999998873
No 37
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-07 Score=101.56 Aligned_cols=47 Identities=38% Similarity=0.914 Sum_probs=44.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1104 (1105)
.|..|.++...++++||+|+|+|..|...+..||+|+.++...+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999988889999999999999887
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.40 E-value=0.00074 Score=81.01 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 648 KVQIQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 648 ~~Q~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
+.++++|..++...++++..|.++..
T Consensus 170 ~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 170 REEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.22 E-value=0.0027 Score=85.04 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=12.0
Q ss_pred EEeccCCCCCcccc
Q 001297 178 FAYGVTSSGKTHTM 191 (1105)
Q Consensus 178 faYGqTGSGKTyTm 191 (1105)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 40
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=8e-07 Score=94.32 Aligned_cols=51 Identities=24% Similarity=0.746 Sum_probs=41.9
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCCccccc--ceeecc
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPICRTKIS--DRLFAF 1104 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-------~~~CPiCR~~i~--~~i~if 1104 (1105)
..+...|.||++...+.||.+|||+ ||..|-.. ...||+|+..|. .+|+||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 4456689999999999999999999 99999432 356999998754 457777
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.14 E-value=0.0055 Score=82.00 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=11.8
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456788888888776
No 42
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.13 E-value=0.0027 Score=84.96 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=16.2
Q ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 812 SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 812 ~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
..+..+++++..++..+..+...+..++...+.....+
T Consensus 827 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 864 (1179)
T TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333333333
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.08 E-value=0.0061 Score=81.64 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.6
Q ss_pred CCCCccchhccc
Q 001297 379 YRDSKLTRLLQS 390 (1105)
Q Consensus 379 yRdSkLTrLLqd 390 (1105)
+|.+++..++.+
T Consensus 55 ~r~~~~~~~i~~ 66 (1164)
T TIGR02169 55 MRAERLSDLISN 66 (1164)
T ss_pred hhhhhHHHhhcc
Confidence 466666666665
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.07 E-value=0.002 Score=77.35 Aligned_cols=77 Identities=23% Similarity=0.313 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHH
Q 001297 652 QNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQ 731 (1105)
Q Consensus 652 q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~ 731 (1105)
..|..+....+.+++.|...+. ....+...|..+.++..-..+....++..|..++.++..++.+|+
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~-------------~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELE-------------QEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444443 222334444444444444455556688888888888888888888
Q ss_pred HHHHHHHHHH
Q 001297 732 EKVNLLEQQL 741 (1105)
Q Consensus 732 ~kl~~lk~~l 741 (1105)
..|..+.++.
T Consensus 227 edi~~l~qk~ 236 (546)
T PF07888_consen 227 EDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHH
Confidence 8888887776
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.05 E-value=0.0069 Score=81.16 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc
Q 001297 909 QREAALEAALAEKEFL-------EDEYRKKVEESKRREEALENDLANMWVLVAKLKKEV 960 (1105)
Q Consensus 909 er~~aLE~el~~k~~~-------eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~ 960 (1105)
.++..|+.++.+...+ -+++..+|+++..+.+.|..+...+...+.++.+.+
T Consensus 949 ~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444444433 233346666666666666666665555556654443
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.94 E-value=0.019 Score=76.97 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 001297 924 LEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 924 ~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
.-++|..+++++++....|..-+
T Consensus 978 r~~~l~~~~~dl~~a~~~l~~~i 1000 (1163)
T COG1196 978 RYEELKSQREDLEEAKEKLLEVI 1000 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 47
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.94 E-value=2.7e-06 Score=88.98 Aligned_cols=49 Identities=20% Similarity=0.750 Sum_probs=40.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc--------------------CCCCCCCcccccc--eeecc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA--------------------CSECPICRTKISD--RLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~--------------------~~~CPiCR~~i~~--~i~if 1104 (1105)
....|.||++...+.++.+|||. ||..|... ...||+||..|.. .+++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45689999999999999999998 99999531 1469999999865 45555
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.84 E-value=0.026 Score=76.93 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 826 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~ 826 (1105)
+..+..+...+..+.+-+.++-++++.|.+.+..|.+..+..-++....+.+-.....++.++-..+.
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666667777777777777777777777777777777655555555555555555544333
No 49
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.6e-06 Score=85.02 Aligned_cols=47 Identities=28% Similarity=0.831 Sum_probs=36.9
Q ss_pred cccccccccccceE-E-eCCCCcccchhhhhcC----CCCCCCcccccce--eecc
Q 001297 1057 HMCKVCFESPTAAI-L-LPCRHFCLCKSCSLAC----SECPICRTKISDR--LFAF 1104 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~v-l-~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~--i~if 1104 (1105)
.+|.||++....-+ + .-|||. ||..|.... .+||+||+.|+.. ++||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 38999999766555 3 799999 999996543 6799999888754 5665
No 50
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.80 E-value=0.019 Score=76.94 Aligned_cols=233 Identities=18% Similarity=0.152 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhccc
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI--------------IENGEA 678 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki--------------~~s~~~ 678 (1105)
-.|++++-...+++..-.....-.-......+.+--.+...|.+++...+.+++.|.... ......
T Consensus 1063 ~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S 1142 (1822)
T KOG4674|consen 1063 IKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLS 1142 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 345555555555555544444444444555566666777788888888888888888776 111121
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--
Q 001297 679 SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQG-- 756 (1105)
Q Consensus 679 s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~-- 756 (1105)
..... ..++..-|..|+.+.+=..-+|++.-.|++.|++|..-.+-.+.+|+..|...+... ........
T Consensus 1143 ~~~~g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-------q~~a~s~~e~ 1214 (1822)
T KOG4674|consen 1143 AMLLG-LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-------QKSAVSDDEH 1214 (1822)
T ss_pred ccccc-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchhhhhhh
Confidence 11111 346777788888888877778888888999998887776666666666666665544 00001111
Q ss_pred -------------------------CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHH
Q 001297 757 -------------------------TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 811 (1105)
Q Consensus 757 -------------------------~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la 811 (1105)
-..+.+.++...+.+=..++..+..++.+|..+......++.+|-.+..-.|-++
T Consensus 1215 ~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1215 KEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN 1294 (1822)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445555556666666677777777777777777778888888888888888
Q ss_pred HHHHHHHHhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 812 SAAAVELKNL-AGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 812 ~a~~~qlk~l-~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
-.+-.+++|. ...+++|...+.+|.+|+..++..++.....+
T Consensus 1295 q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~ 1337 (1822)
T KOG4674|consen 1295 QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKEL 1337 (1822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777 45788888899999999888887776665433
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.79 E-value=0.036 Score=68.58 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 001297 615 LVEQVKMLAGEI 626 (1105)
Q Consensus 615 l~eq~k~l~~e~ 626 (1105)
||.|+++|...+
T Consensus 229 Lr~QvrdLtEkL 240 (1243)
T KOG0971|consen 229 LRAQVRDLTEKL 240 (1243)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.31 Score=62.68 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhh
Q 001297 647 SKVQIQNLEREIQEKRRQMRILEQRIIENGEA----SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 722 (1105)
Q Consensus 647 ~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~----s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~ 722 (1105)
..+++++|...++..-+.++.|.++|++.-.. .......-+++..|+.|+.++++.. +--.|-+....||..+..
T Consensus 818 l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q-e~~~Kk~~i~~lq~~i~~ 896 (1293)
T KOG0996|consen 818 LENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ-EKAAKKARIKELQNKIDE 896 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 34556666666666666677777776443322 1111122344555666666665543 111112233444433332
Q ss_pred h--------hhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHH
Q 001297 723 K--------CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 794 (1105)
Q Consensus 723 a--------~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~ 794 (1105)
. ..++..+.++++.+...+.-..-..+....+.......+.++. .++++.+.+...|.++...+.
T Consensus 897 i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le-------~~~~~~e~e~~~L~e~~~~~~ 969 (1293)
T KOG0996|consen 897 IGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELE-------REIEDTEKELDDLTEELKGLE 969 (1293)
T ss_pred hhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhH
Confidence 2 3333444444444444432111112222222222333333333 344455555555555555444
Q ss_pred HHHHHHHHH-------HhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-hhh
Q 001297 795 VQNQKLAEE-------ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM-QTV 856 (1105)
Q Consensus 795 ~e~~kL~~e-------~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi-q~v 856 (1105)
.....+-.+ ---.++-...++.+++++-+.++.|.+.-.-+.--+++........+..+ +|.
T Consensus 970 ~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~ 1039 (1293)
T KOG0996|consen 970 EKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPE 1039 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 444333222 22233344445555666666666555533333333444444444444444 554
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.76 E-value=0.028 Score=76.49 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcC
Q 001297 913 ALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVG 961 (1105)
Q Consensus 913 aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~~ 961 (1105)
.|+.++..-+...+|+...+.+++++++.|+.|+..|......+.+.+.
T Consensus 1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr 1691 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARR 1691 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555667777788888899999999999777777776655543
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=97.75 E-value=0.051 Score=71.05 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHH-------HHHHhHHHHHHH
Q 001297 647 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE-------IKSADNRILQEQ 719 (1105)
Q Consensus 647 ~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~-------~k~ae~~~lqeq 719 (1105)
.+.+...|.+.+++.++++..+.+.+..... .+..+..++..+..++++..-.++ ........++++
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~------~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~ 420 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEARE------AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 3345556666666666666655555532222 222333444444444444322222 222233444444
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 001297 720 LQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 720 L~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+..+...+.+++..+..++..+
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l 442 (880)
T PRK02224 421 RDELREREAELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.1e-05 Score=88.20 Aligned_cols=45 Identities=36% Similarity=0.907 Sum_probs=38.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1100 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1100 (1105)
...+|.+|+++..+--..||||. ||..|... -..||.||.++...
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCc
Confidence 45699999999999999999999 99999533 25699999988754
No 56
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=0.059 Score=73.33 Aligned_cols=114 Identities=10% Similarity=0.094 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 689 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~ 689 (1105)
++++.++.++..+...+......+..+-... ..-.-+.++..++.+.+.+|+.|..++..... ..++.+++
T Consensus 758 ~~l~~~~~~le~~~~~l~~~~~~~~~~esL~-----~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele 828 (1311)
T TIGR00606 758 RDIQRLKNDIEEQETLLGTIMPEEESAKVCL-----TDVTIMERFQMELKDVERKIAQQAAKLQGSDL----DRTVQQVN 828 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCHHHHH
Confidence 5566666666666666666555554221111 01123567788888888888888888864443 11455677
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 732 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~ 732 (1105)
.++..+..+++...-+++....+...+++++......+.++..
T Consensus 829 ~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~ 871 (1311)
T TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666665555554444444444444444333333333
No 57
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.027 Score=76.55 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH--hHHHHH
Q 001297 647 SKVQIQNLEREIQEKRRQMRILEQRIIENGEA-------SMANASMVDMQQTVTRLMSQCNEKAFELEIKSA--DNRILQ 717 (1105)
Q Consensus 647 ~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~-------s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~a--e~~~lq 717 (1105)
.+.+...+.+++++.+.+++.+...+...... ..+...+..+.+++..+..++++..-++..... ....++
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele 828 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVN 828 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence 34455566666666666655555555322111 122223344566666666666655444442211 223344
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 001297 718 EQLQNKCSENKKLQEKVNLLE 738 (1105)
Q Consensus 718 eqL~~a~~e~~~l~~kl~~lk 738 (1105)
+++.....++..+..+++.+.
T Consensus 829 ~ei~~~~~el~~l~~~~e~l~ 849 (1311)
T TIGR00606 829 QEKQEKQHELDTVVSKIELNR 849 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.69 E-value=0.065 Score=65.55 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
+++-+.|+.-.+.|.|--.+|+..|..|.+|-+-..++.+-...+|.++-.-.+.-+
T Consensus 255 ~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 255 EEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556667777888888899999999999999999999999888888866555443
No 59
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.69 E-value=0.026 Score=64.07 Aligned_cols=211 Identities=14% Similarity=0.190 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 729 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~ 729 (1105)
|...+.-+++.++.++.+.++... ....+-+.-.-||+..-.|.+..++++.++.-.+..
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~--------------------~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~k 134 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKR--------------------AAETEREAARSELQKARQEREAVRQELAAARQNLAK 134 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655544332 111122222233433344777778888888877777
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHH
Q 001297 730 LQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKE 809 (1105)
Q Consensus 730 l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~ 809 (1105)
++.++.++..|- .++..+...|.++..+|..+.+-|..+...--.
T Consensus 135 AqQ~lar~t~Q~-----------------------------------q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 135 AQQELARLTKQA-----------------------------------QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred HHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666655 667777788888888888888877664333333
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccc
Q 001297 810 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDD 889 (1105)
Q Consensus 810 la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~ 889 (1105)
-+.+++.+-.+|..+-.+.+.+-.-|.. -+..+ ..|+++++.+..
T Consensus 180 s~~Qlk~~~~~L~~r~~~ieQ~~~~la~----r~~a~----------------------q~r~~ela~r~a--------- 224 (499)
T COG4372 180 SATQLKSQVLDLKLRSAQIEQEAQNLAT----RANAA----------------------QARTEELARRAA--------- 224 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----------------------HHHHHHHHHHHH---------
Confidence 3455555555555555444333222211 11111 123333333221
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 890 FDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKL 956 (1105)
Q Consensus 890 ~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl 956 (1105)
+.......+.-+.-.+..+..++.++...-.|-..++++++.....|+.|.+.++..|..-
T Consensus 225 ------a~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y 285 (499)
T COG4372 225 ------AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAY 285 (499)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333344444555555555553333444566666666677777776666655544
No 60
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.69 E-value=0.048 Score=65.77 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhcchhh
Q 001297 787 SEENSGLHVQNQKLAEEASYAKELASAAAVELK-NLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM---QTVNGVNRK 862 (1105)
Q Consensus 787 ~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk-~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi---q~v~~~ar~ 862 (1105)
.+....|..+.++|-. ..+.+.+.+ -+.+-|.|+.++..+...++...+..+...+++. |..+|.+++
T Consensus 494 ge~i~~L~sE~~~lk~--------il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 494 GELITKLQSEENKLKS--------ILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred hhHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444555666665544 333333332 3455567777777777777776666666666665 888888888
Q ss_pred hhh
Q 001297 863 YSD 865 (1105)
Q Consensus 863 ylq 865 (1105)
-+|
T Consensus 566 Dlq 568 (961)
T KOG4673|consen 566 DLQ 568 (961)
T ss_pred hHH
Confidence 776
No 61
>PRK02224 chromosome segregation protein; Provisional
Probab=97.64 E-value=0.033 Score=72.79 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=11.8
Q ss_pred EEEeccCCCCCcccc
Q 001297 177 VFAYGVTSSGKTHTM 191 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm 191 (1105)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998754
No 62
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.64 E-value=0.15 Score=63.89 Aligned_cols=198 Identities=18% Similarity=0.175 Sum_probs=117.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHH
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 688 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~ 688 (1105)
..+|-.|..|+.-+-.|=+.....|+ +.+.|.+.-...+....+.|..|...|.....-... . +.
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~-----------e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~---k-e~ 328 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQ-----------ESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQED---K-EQ 328 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---h-hh
Confidence 35678888888888777777777776 455666677777777888888888777433321000 0 00
Q ss_pred HH--HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHH
Q 001297 689 QQ--TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 766 (1105)
Q Consensus 689 ~q--~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~ 766 (1105)
+. .-.+.....++ ..-|++-.....+|+-++..+..++..|..+|+.|+.++ .++.
T Consensus 329 ~~~~d~~~~~~s~~d-~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~---------------------~~~~ 386 (717)
T PF09730_consen 329 QSAEDSEKERDSHED-GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKY---------------------NELE 386 (717)
T ss_pred hhhhhcccccccccc-cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 00 00011111112 333444444577899999999999999999999999998 2233
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
+.|+.++..|..+...|..+...+....--..+....+..+|.++...+..-.........||...-+.+
T Consensus 387 ----------~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 387 ----------ERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2344444444444444444444443322233445555666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 001297 847 HSRGAAM 853 (1105)
Q Consensus 847 ~~~e~qi 853 (1105)
++.-..+
T Consensus 457 AqLYHHV 463 (717)
T PF09730_consen 457 AQLYHHV 463 (717)
T ss_pred HHHHHHH
Confidence 5555555
No 63
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.63 E-value=0.09 Score=64.37 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCC--CchH-----H--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD--GSKV-----Q--------IQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~--~~~~-----Q--------~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.|.+-.+-+|.++..+=-+.+...-.+|.|.++-|-. +.+. | .--|.++++.++++|..|.-+..
T Consensus 37 edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~ 116 (1265)
T KOG0976|consen 37 EDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCL 116 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555445556677666666666666677777765421 1111 1 11244555555555555555543
Q ss_pred HhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHH
Q 001297 674 ENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 728 (1105)
Q Consensus 674 ~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~ 728 (1105)
..-. ....||-.++.+..++++-..+|+...++...+.+.|.++..+|.
T Consensus 117 ~lE~------ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 117 RLEM------EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 2221 222344444444444444444444444444444444444444443
No 64
>PRK11637 AmiB activator; Provisional
Probab=97.63 E-value=0.011 Score=70.72 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=77.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhh
Q 001297 646 GSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 725 (1105)
Q Consensus 646 ~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~ 725 (1105)
+.+.+++.+..+++.++.++..+.+++. +++.++..+..+++...-+++....+...++.++...+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~-------------~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRA-------------SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666555555553 344455555555555555555555666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCC------------CCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q 001297 726 ENKKLQEKVNLLEQQLACQNGDKSAGSSG------------QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 793 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l~~~~e~~~~~~~~------------~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L 793 (1105)
++..++++|+..+..+...+-.-.. ++. .......+.-+....+....-++.|......|.+.+..|
T Consensus 111 eI~~~q~~l~~~~~~l~~rlra~Y~-~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~l 189 (428)
T PRK11637 111 SIAKLEQQQAAQERLLAAQLDAAFR-QGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAEL 189 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666555441110 000 011111111122233445666777777777777777766
Q ss_pred HHHHHHHHH
Q 001297 794 HVQNQKLAE 802 (1105)
Q Consensus 794 ~~e~~kL~~ 802 (1105)
..+...+..
T Consensus 190 e~~~~~l~~ 198 (428)
T PRK11637 190 EEKQSQQKT 198 (428)
T ss_pred HHHHHHHHH
Confidence 666655554
No 65
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.62 E-value=3.3e-05 Score=84.18 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=36.8
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhhh----cCCCCCCCcccccceeec
Q 001297 1056 SHMCKVCFESPTA--------AILLPCRHFCLCKSCSL----ACSECPICRTKISDRLFA 1103 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~--------~vl~PCgH~~~C~~C~~----~~~~CPiCR~~i~~~i~i 1103 (1105)
...|.||++...+ .++.+|+|. ||..|.. ....||+||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996432 467789998 9999942 336799999999987653
No 66
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.62 E-value=0.23 Score=63.15 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=145.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-------c
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMA-------N 682 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~-------~ 682 (1105)
.+++.|......+..|+-.....|. ..+.++++++..+....++|+.|.-++...|.++.+ .
T Consensus 114 ~q~~rl~~E~er~~~El~~lr~~lE-----------~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~ 182 (775)
T PF10174_consen 114 EQFERLQAERERLQRELERLRKTLE-----------ELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEAL 182 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHH
Confidence 3445555555555555555554444 345678899999999999999999988544443221 1
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHH-------------HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 001297 683 ASMVDMQQTVTRLMSQCNEKAFELE-------------IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKS 749 (1105)
Q Consensus 683 ~~~~e~~q~~~~L~~~l~e~~~el~-------------~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~ 749 (1105)
.-+.+....+..|...++++.-++. ...|.-.++|.-+..++..|..+++-|..++..+.. +...-
T Consensus 183 ~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~-L~~~~ 261 (775)
T PF10174_consen 183 RRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYR-LRSRG 261 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence 1233444555666655655554441 113444588899999999999987766666665522 21000
Q ss_pred CCCCCCCCcHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH
Q 001297 750 AGSSGQGTSDEYVDEL---RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 826 (1105)
Q Consensus 750 ~~~~~~~~~ee~~~el---~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~ 826 (1105)
.... .+......++ +.....-|..++.++.+...=..|...+.++++.+...+.-.+..+..++.+|.+.-.+.+
T Consensus 262 ~~~~--~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~ 339 (775)
T PF10174_consen 262 ELSE--ADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAE 339 (775)
T ss_pred cccc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111111111 1222233455777777777777788888888888888877778888888888888888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 827 KLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 827 kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
.|...+..|+.+|+.+...+..-.+++
T Consensus 340 ~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 340 MLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777666666666
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.15 Score=64.40 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~ 673 (1105)
.|..++.-+-.+++.++.|+.
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~ 732 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLE 732 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466666666677766666664
No 68
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.58 E-value=3.3e-05 Score=62.38 Aligned_cols=37 Identities=38% Similarity=1.006 Sum_probs=31.9
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhcCC----CCCCCcc
Q 001297 1058 MCKVCFESP---TAAILLPCRHFCLCKSCSLACS----ECPICRT 1095 (1105)
Q Consensus 1058 ~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~~~----~CPiCR~ 1095 (1105)
.|.+|+... ...++++|||. ||..|..... .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 489999876 56899999999 9999987776 7999985
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.12 Score=65.17 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 896 DPDDLKLELQARKQREAALEAALAEKE-FLEDEYRKKVEESKRREEALENDLANMWVLVAKL 956 (1105)
Q Consensus 896 ~~~~~k~e~~a~~er~~aLE~el~~k~-~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl 956 (1105)
.....+..+....+.+..|+..+--+. .+-+....++-+++.+.+-++++-.-+...+++|
T Consensus 959 ~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~l 1020 (1174)
T KOG0933|consen 959 DPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKL 1020 (1174)
T ss_pred CHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444555555555443333 2233334445555555555555443334444444
No 70
>PRK11637 AmiB activator; Provisional
Probab=97.57 E-value=0.048 Score=65.44 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHH
Q 001297 652 QNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQ 731 (1105)
Q Consensus 652 q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~ 731 (1105)
..+..++++.+.+|..+.+.+. +++.++..+..+++...-++.....+...++++|...+.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~-------------~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVR-------------QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666554 445555555555555444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 001297 732 EKVNLLEQQL 741 (1105)
Q Consensus 732 ~kl~~lk~~l 741 (1105)
++|..++.++
T Consensus 110 ~eI~~~q~~l 119 (428)
T PRK11637 110 ASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.53 E-value=0.063 Score=56.39 Aligned_cols=119 Identities=28% Similarity=0.322 Sum_probs=87.6
Q ss_pred HHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHH
Q 001297 696 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETE 775 (1105)
Q Consensus 696 ~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E 775 (1105)
.+.+++..+--...+-++..|+..+..++..+..|..++..|+.++ .+ ...+-.....=++|
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~------~s------------~Qqal~~aK~l~eE 68 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL------KS------------LQQALQKAKALEEE 68 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------HHHHHHHHHHHHHH
Confidence 3334433333334466889999999999999999999999999998 11 11222222333789
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 776 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 776 ~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
+++|+.....|.|++.+|..+...+-. +...|..+|..|..+|.+|-.|....+...
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEk--------------E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEK--------------EQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 999999999999999999888777665 677788899999999999988877666433
No 72
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.52 E-value=3.1e-05 Score=60.80 Aligned_cols=34 Identities=32% Similarity=1.074 Sum_probs=27.6
Q ss_pred cccccccccce-EEeCCCCcccchhhhhc----CCCCCCC
Q 001297 1059 CKVCFESPTAA-ILLPCRHFCLCKSCSLA----CSECPIC 1093 (1105)
Q Consensus 1059 C~IC~~~~~~~-vl~PCgH~~~C~~C~~~----~~~CPiC 1093 (1105)
|.||++..++. ++.||||. ||..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999998 78999999 99999543 3679998
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.48 E-value=0.013 Score=64.07 Aligned_cols=54 Identities=35% Similarity=0.380 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001297 897 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 950 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~ 950 (1105)
.+.+..++....+++.+|+.++.......++|+.++..++.+...++.++....
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999999999999998888888888888888888888888774433
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=4e-05 Score=89.56 Aligned_cols=43 Identities=35% Similarity=0.939 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccccc
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKISD 1099 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~---------~~~CPiCR~~i~~ 1099 (1105)
+..|+||++.+...+.+-|||. ||..|-.. .+.||+||..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5589999999999999999999 99999432 2669999999976
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.43 E-value=0.18 Score=61.18 Aligned_cols=57 Identities=28% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHH-------HHHHHHHHHHHhhHHHHHHhh
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK-------ELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k-------~la~a~~~qlk~l~~ev~kL~ 829 (1105)
+.|+.-+++.+..|.+++..|..+|.+|-.+--..+ -+...+..+.++|-++++-+.
T Consensus 154 eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 154 EAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555555555555544333222 122333444455555555544
No 76
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.41 E-value=0.24 Score=63.04 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 728 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~ 728 (1105)
..+..+.-++..++.++..+..++..... ...++.+.|..|+.+|..+.-+.+...+|+..|+-+|..+...+.
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~------~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEE------QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44678888999999999999998864433 233778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 001297 729 KLQEKVNLLEQQL 741 (1105)
Q Consensus 729 ~l~~kl~~lk~~l 741 (1105)
..++.+..+....
T Consensus 361 kk~~~~~~~qeE~ 373 (775)
T PF10174_consen 361 KKQAQIEKLQEEK 373 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777777766
No 77
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.40 E-value=0.11 Score=64.44 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 930 KKVEESKRREEALENDLANMWVLVAKL 956 (1105)
Q Consensus 930 ~k~ee~kk~~~~L~~EL~~m~~~~~kl 956 (1105)
-++.+.|.--++++.+|-.|++..++-
T Consensus 570 ~~fa~skayaraie~QlrqiEv~~a~r 596 (1243)
T KOG0971|consen 570 IKFAESKAYARAIEMQLRQIEVAQANR 596 (1243)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888877664
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.34 E-value=0.11 Score=58.68 Aligned_cols=188 Identities=21% Similarity=0.298 Sum_probs=106.1
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc----CCCCC-CCC--------C--CCcHHHHHHHHHHHHhhHHH
Q 001297 711 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG----DKSAG-SSG--------Q--GTSDEYVDELRKKVQSQETE 775 (1105)
Q Consensus 711 ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e----~~~~~-~~~--------~--~~~ee~~~el~~~l~~q~~E 775 (1105)
..+..+.++|..+...+..|+++|..-..-+ +..- ..... ... . ....-.+..|+.+++.=.+|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL-~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeE 175 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELL-QIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEE 175 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHH
Confidence 3455667777777777777777765433332 1111 00000 000 0 01123445666666666777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001297 776 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQT 855 (1105)
Q Consensus 776 ~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~ 855 (1105)
+..|..|...|..+...++.+-+.|..+- ..-+..|..++..|.+++.+-..++.+..+|+..+...+......++.
T Consensus 176 N~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 176 NEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766542 233455556777777777777666666666666666555544433322
Q ss_pred hhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001297 856 VNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEES 935 (1105)
Q Consensus 856 v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~ 935 (1105)
... -...+..-+.+.++.+..|.+++ .||+.||.|.
T Consensus 253 ~~~-------------------------------------EnEeL~q~L~~ske~Q~~L~aEL-------~elqdkY~E~ 288 (306)
T PF04849_consen 253 LAA-------------------------------------ENEELQQHLQASKESQRQLQAEL-------QELQDKYAEC 288 (306)
T ss_pred Hhh-------------------------------------hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 110 12334445556666666666665 4555666666
Q ss_pred HHHHHHHHHHH
Q 001297 936 KRREEALENDL 946 (1105)
Q Consensus 936 kk~~~~L~~EL 946 (1105)
..-+.+.+.||
T Consensus 289 ~~mL~EaQEEl 299 (306)
T PF04849_consen 289 MAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHH
Confidence 66666666666
No 79
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=97.32 E-value=0.00052 Score=59.10 Aligned_cols=46 Identities=33% Similarity=0.601 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcC
Q 001297 909 QREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVG 961 (1105)
Q Consensus 909 er~~aLE~el~~k~~~eeEL~----------~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~~ 961 (1105)
++|++|++||++|+.+++||+ +++++++++...|..|+ +.|+++++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei-------~~L~~e~e 56 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI-------ERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 579999999999999999997 89999999999999999 66666654
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.29 E-value=0.59 Score=58.33 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=30.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhc----cCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQS----VNDPDGSKVQIQ-NLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~----~~~~~~~~~Q~q-~L~~qlrdKeeei~~L~qki~ 673 (1105)
+++++..|++..+.....|.....+|..|-.+. ..+|....+..+ .|+++++....+++.|..++.
T Consensus 34 mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 34 MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444444444444444443222 223333333333 566666655556666665554
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.28 E-value=0.5 Score=57.47 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH-----------HHHHHH-
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE-----------LLAARE- 844 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E-----------l~~~k~- 844 (1105)
+.+..+..+|..+...|...+++.-.-+.++-|.| ..++.+|-.++..-+..+..|-.+ ++.+++
T Consensus 576 dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~---R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~t 652 (961)
T KOG4673|consen 576 DEARERESMLVQQVEDLRQTLSKKEQQAARREDMF---RGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQET 652 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 44555666666667776666666555444444433 345555555555444444444333 444443
Q ss_pred ---HHHHHHHhhhhhhc
Q 001297 845 ---SMHSRGAAMQTVNG 858 (1105)
Q Consensus 845 ---~~~~~e~qiq~v~~ 858 (1105)
..+.|+..-+.+++
T Consensus 653 l~~~~tawereE~~l~~ 669 (961)
T KOG4673|consen 653 LSKAATAWEREERSLNE 669 (961)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 34678775555554
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.25 E-value=0.31 Score=55.83 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH-------HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIK-------SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k-------~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
-...++..|+.++++...+-... ..+...++.++......+..++.++..++..+
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35667777777766555443333 23555666666666666666666666666665
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.24 E-value=0.79 Score=58.69 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q 001297 796 QNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 796 e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El 839 (1105)
-+.++-++.+.+-.++.++..++..|...+.+|...-.|...++
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34556667778888999999999999999998877766665553
No 84
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.23 E-value=9.9e-05 Score=59.45 Aligned_cols=36 Identities=36% Similarity=0.973 Sum_probs=28.9
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001297 1058 MCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICR 1094 (1105)
Q Consensus 1058 ~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~----~~~CPiCR 1094 (1105)
.|.||++.. ..++.+||||. ||..|... ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999965 57888999998 99999433 36799998
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.23 E-value=0.8 Score=62.03 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q 001297 809 ELASAAAVELKNLAGEVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 809 ~la~a~~~qlk~l~~ev~kL~~~N~qL~~El 839 (1105)
.....+..+|..+-.++.++.++..+|..-|
T Consensus 504 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 504 KERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455566666666666666666665553
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=97.22 E-value=1.2 Score=58.48 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.6
Q ss_pred EEeccCCCCCcccc
Q 001297 178 FAYGVTSSGKTHTM 191 (1105)
Q Consensus 178 faYGqTGSGKTyTm 191 (1105)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999998765
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.18 E-value=0.77 Score=57.36 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-chh--HHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRIIENGEASMAN-ASM--VDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~-~~~--~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
+....+++.+.+.+|..|...+.......++. .+. ..++.++..|..+++...-+|.....++..|..-..+.+.++
T Consensus 45 k~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL 124 (617)
T PF15070_consen 45 KEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERL 124 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666655554333222221 111 135667778888877777666666668888877777888999
Q ss_pred HHHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQLA 742 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l~ 742 (1105)
.+|+.++.+++....
T Consensus 125 ~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 125 AELEEELERLQEQQE 139 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888763
No 88
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.17 E-value=0.57 Score=63.90 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 897 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLAN 948 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~ 948 (1105)
...+..+..+....+..|+.+.........+++.+++++.+++..|..--|.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~ 604 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPA 604 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 3445555555555555666655555555666667777777777777665444
No 89
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.00014 Score=84.65 Aligned_cols=43 Identities=28% Similarity=0.747 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
...|.||++-..+.|+.||||. ||..|... ...||+|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3489999999999999999999 99999643 2469999998764
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.16 E-value=0.15 Score=63.13 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+...+++++.....++..++.+++.++.++
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666
No 91
>PHA02926 zinc finger-like protein; Provisional
Probab=97.16 E-value=0.00011 Score=77.72 Aligned_cols=45 Identities=31% Similarity=0.840 Sum_probs=34.2
Q ss_pred cccccccccc---------cceEEeCCCCcccchhhhhc----------CCCCCCCcccccceee
Q 001297 1057 HMCKVCFESP---------TAAILLPCRHFCLCKSCSLA----------CSECPICRTKISDRLF 1102 (1105)
Q Consensus 1057 ~~C~IC~~~~---------~~~vl~PCgH~~~C~~C~~~----------~~~CPiCR~~i~~~i~ 1102 (1105)
..|.||++.- +--+|.+|+|. ||-.|... ...||+||..+...++
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3799999852 23688899999 99999421 1239999999886654
No 92
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.53 Score=56.79 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhh---ccCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhH
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQ---SVNDPDGSKVQ---IQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 686 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~---~~~~~~~~~~Q---~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~ 686 (1105)
-.|+.++..+.-++........+|-|+ ....|...++= +..|++++..-+.++..+.++.+
T Consensus 224 ~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~------------- 290 (581)
T KOG0995|consen 224 HRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ------------- 290 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH-------------
Confidence 456666666777777766666655443 22223222221 11244444444444444444332
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 766 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~ 766 (1105)
.+.+.+ ..++..+..++.|+..++++.|.||-++ +. ++-+
T Consensus 291 ~~~~~l---------------------~~l~~Eie~kEeE~e~lq~~~d~Lk~~I------e~-----Q~iS-------- 330 (581)
T KOG0995|consen 291 HMEKKL---------------------EMLKSEIEEKEEEIEKLQKENDELKKQI------EL-----QGIS-------- 330 (581)
T ss_pred HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh-----cCCC--------
Confidence 233333 3445555577899999999999999998 21 1111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 827 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~k 827 (1105)
.++++++-+|+..|..+..++..+.++|..+.-..+..+-....+++.+.-..+.
T Consensus 331 ------~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 331 ------GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888887777777666665555555444433
No 93
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.13 E-value=0.4 Score=65.38 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCC----CCCCcHHHHHHHH
Q 001297 691 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSS----GQGTSDEYVDELR 766 (1105)
Q Consensus 691 ~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~----~~~~~ee~~~el~ 766 (1105)
.+..+..++++..-+++....+...+++++++...+...++.++..+++.+...-.+. .-.+ +..+++..+..+.
T Consensus 370 eLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~-~~~~~~~~SdEeLe~~LenF~ 448 (1486)
T PRK04863 370 VVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGLPDLTADNAEDWLEEFQ 448 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHH
Confidence 3344444444444444444445555555566555566666666555555552222211 1111 1234566666777
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----hHHHHHHHHH---HHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA-----SYAKELASAA---AVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~-----~~~k~la~a~---~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
+.+.....++.+++.+...+..+...+..+...+..+. ..+.+.|..+ ..+++.++.++.-+..+...|+..
T Consensus 449 aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (1486)
T PRK04863 449 AKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQR 528 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666655532 2233333332 234556666666666666666664
Q ss_pred HH
Q 001297 839 LL 840 (1105)
Q Consensus 839 l~ 840 (1105)
+.
T Consensus 529 ~~ 530 (1486)
T PRK04863 529 LR 530 (1486)
T ss_pred HH
Confidence 44
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.12 E-value=0.094 Score=63.50 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 732 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~ 732 (1105)
-|..|-+..+-.|..|...+.. .+.....+ ...++..++.-+++-.=+......+...|++++.++...+.+.++
T Consensus 60 ~LEaqN~~L~~di~~lr~~~~~---~ts~ik~~--ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 60 FLEAQNRKLEHDINLLRGVVGR---ETSGIKAK--YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhccC---CCcchhHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444445444444421 11221122 344666666666654433333333444555555555555555544
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHH
Q 001297 733 KVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELAS 812 (1105)
Q Consensus 733 kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~ 812 (1105)
.+...+.++-..+ ...+.++..++-++.-...=.+|...+++|+..|..+...+..+++. |...+.|+-+
T Consensus 135 ~~~~~re~~~~~~-------~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~---Etllr~d~~n 204 (546)
T KOG0977|consen 135 ERRGAREKLDDYL-------SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD---ETLLRVDLQN 204 (546)
T ss_pred HHhhhHHHHHHHh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 4444444431111 11234445555555555555666677777777777666666554432 3334444444
Q ss_pred HHHHHHHhhH
Q 001297 813 AAAVELKNLA 822 (1105)
Q Consensus 813 a~~~qlk~l~ 822 (1105)
....-++.|.
T Consensus 205 ~~q~Lleel~ 214 (546)
T KOG0977|consen 205 RVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHH
Confidence 4444344333
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.077 Score=66.92 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=24.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 821 LAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 821 l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
|-.+...|+.+-.+|+.||..+.+....++..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777888888887777777777655
No 96
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.09 E-value=0.86 Score=52.22 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHH-------HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001297 686 VDMQQTVTRLMSQCNEKAFELEIK-------SADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 742 (1105)
Q Consensus 686 ~e~~q~~~~L~~~l~e~~~el~~k-------~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~ 742 (1105)
+.+..++..+..++++..-.|+.. ..+...|+..|.+.......|+.++..|+..+.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 355666666666666666655544 337777888999888888888888888888774
No 97
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.07 E-value=0.63 Score=63.00 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.++..|.....|++.+...+.+++.
T Consensus 366 ~~~~~Lt~~~~di~~ky~~~~~~l~ 390 (1201)
T PF12128_consen 366 EQLDLLTSKHQDIESKYNKLKQKLE 390 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666553
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.04 E-value=0.94 Score=56.50 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=75.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Q 001297 785 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYS 864 (1105)
Q Consensus 785 ~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~yl 864 (1105)
.+.++...+..+...+.........-++.+..+++.+.++++.+..+...+.+.+...+.....-+ ..+
T Consensus 352 ~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr-----------~kL 420 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAR-----------EKL 420 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 333334444444444444333344445556666666666666666665555555554443333222 223
Q ss_pred hhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 001297 865 DGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFL-EDEYRKKVEESKRREEALE 943 (1105)
Q Consensus 865 q~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~-eeEL~~k~ee~kk~~~~L~ 943 (1105)
+.++.+..+--..++. .. . -...........+..+.+..|...+.+ -++ .+...+.++++..++..|.
T Consensus 421 ~~~~~~L~~ikr~l~k--~~-----l---pgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~ 489 (569)
T PRK04778 421 ERYRNKLHEIKRYLEK--SN-----L---PGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLE 489 (569)
T ss_pred HHHHHHHHHHHHHHHH--cC-----C---CCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3222222221111110 00 0 112444555566666777777777766 333 4555567777777777777
Q ss_pred HHHHhhHHHHHHhhh
Q 001297 944 NDLANMWVLVAKLKK 958 (1105)
Q Consensus 944 ~EL~~m~~~~~kl~k 958 (1105)
.+...|-.....+.+
T Consensus 490 ~q~~dL~~~a~~lE~ 504 (569)
T PRK04778 490 EETEELVENATLTEQ 504 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666555555543
No 99
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0002 Score=77.64 Aligned_cols=42 Identities=38% Similarity=0.941 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc------CCCCCCCccccc
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKIS 1098 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~------~~~CPiCR~~i~ 1098 (1105)
+.+|.+|++.+-...-.||||. ||..|-.. ...||.||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4589999999999999999999 99999554 234999999754
No 100
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.01 E-value=0.079 Score=67.74 Aligned_cols=174 Identities=23% Similarity=0.330 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH-------hHHHHHHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSA-------DNRILQEQL 720 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~-s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~a-------e~~~lqeqL 720 (1105)
-|...+...++.+++.+..+..++...-.. ........+.+.++..++.+-+...-|++..-+ +...++++.
T Consensus 281 ~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~ 360 (1074)
T KOG0250|consen 281 RQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI 360 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888877433221 001112234444455554444444444443211 445566666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001297 721 QNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 721 ~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
..++..+.++.+++|.++.++...-+ +...++...+.+-..+++.|++++..+.+....|..+.+.+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~-------------~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEK-------------QTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777722111 11133333333333445555566666666555555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 801 AEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 801 ~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
.+ -+..-..++..+-.++..|.........+|...
T Consensus 428 ~~-------~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 428 KE-------KAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333333444444445555544444444444433
No 101
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.00 E-value=0.00031 Score=58.60 Aligned_cols=41 Identities=32% Similarity=0.740 Sum_probs=36.2
Q ss_pred ccccccccccceEEeCCCCcccchhhh--hcCCCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCS--LACSECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~--~~~~~CPiCR~~i~~ 1099 (1105)
.|..|......-+++||||+ +|..|. .+..-||+|..+|+.
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 69999999899999999999 999994 566789999999864
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.99 E-value=0.094 Score=64.95 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.3
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35566899999998755
No 103
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.98 E-value=0.00045 Score=52.66 Aligned_cols=34 Identities=41% Similarity=1.174 Sum_probs=29.8
Q ss_pred cccccccccceEEeCCCCcccchhhhh-----cCCCCCCC
Q 001297 1059 CKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPIC 1093 (1105)
Q Consensus 1059 C~IC~~~~~~~vl~PCgH~~~C~~C~~-----~~~~CPiC 1093 (1105)
|.||++.....+++||+|. ||..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 9999964 34569988
No 104
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.96 E-value=0.23 Score=54.95 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=79.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHh
Q 001297 692 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 771 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~ 771 (1105)
+..++.++++..-.++...........++..++.++..|..+|..+...+-. .+ +........+.++.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~-~e------erL~~~~~kL~~~e----- 70 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELER-AE------ERLEEATEKLEEAE----- 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HH------CCCCHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HH------HHHHHHHHHHHHHH-----
Confidence 4556666666666666666666677777777888888888888777776611 11 11122222333322
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
...+..++....|.........++..|-..-..++..+..+...++.+..++..++....+...-++.....+...+.
T Consensus 71 --~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 71 --KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 223333444444444444444444444444444555555555555555555555555555555555544444444444
Q ss_pred hh
Q 001297 852 AM 853 (1105)
Q Consensus 852 qi 853 (1105)
.+
T Consensus 149 el 150 (237)
T PF00261_consen 149 EL 150 (237)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 105
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.96 E-value=0.00054 Score=54.15 Aligned_cols=39 Identities=44% Similarity=1.087 Sum_probs=29.9
Q ss_pred ccccccccccc-eEEeCCCCcccchhhhh-----cCCCCCCCcccc
Q 001297 1058 MCKVCFESPTA-AILLPCRHFCLCKSCSL-----ACSECPICRTKI 1097 (1105)
Q Consensus 1058 ~C~IC~~~~~~-~vl~PCgH~~~C~~C~~-----~~~~CPiCR~~i 1097 (1105)
.|.||++.... +++.||||. ||..|.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999998844 445559999 9999964 235699999864
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.96 E-value=0.51 Score=61.06 Aligned_cols=155 Identities=26% Similarity=0.258 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKL---QEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL 765 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l---~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el 765 (1105)
|++++.....+.+..-+.+...+.++.++++|..+.-.+..+ ..++..++.++.+....-.+..+..+.+.....++
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~ 572 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKEL 572 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhh
Confidence 344444444444444444444555666666665555444444 34444455555322221111122222333344555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 766 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 766 ~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
...++++.++...+......|.+.+.+|..++.++..+...-+..-........++-.++.-|+..+..+..++...+
T Consensus 573 ~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 573 SKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 556666666666777777777777777777777776666666666666655666666666666555555555544443
No 107
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.91 E-value=0.00032 Score=76.16 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=35.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
.|.||.+..+--++.||||. ||.-|.... ..||+||..+..
T Consensus 27 rC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 27 RCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred Hhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 69999999999999999999 999997654 669999987653
No 108
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=96.91 E-value=1.9e-05 Score=97.00 Aligned_cols=247 Identities=19% Similarity=0.197 Sum_probs=143.5
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEe----ecCCEEEec----CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWY----ADGDKIVRN----EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~----~~~~~i~~~----~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l 170 (1105)
..+++|+|+|+|........-....+. .-..++..+ .......|.||.+|.+...+..++.. ...+++..+
T Consensus 304 ~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 382 (568)
T COG5059 304 NCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFRE-QSQLSQSSL 382 (568)
T ss_pred CccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhh
Confidence 338999999999874421100000000 000111111 12233469999999998888888874 445677777
Q ss_pred cCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC--CceEEEEEeeeeeecceeeeccCCC-CCc--c
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT-GQN--L 245 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~p~-~~~--l 245 (1105)
+| +++||++++|+++||. ....++.+-.+...|..+.... ...+...+-+++||-....+++... +.. .
T Consensus 383 ~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 456 (568)
T COG5059 383 SG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK 456 (568)
T ss_pred hh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 78 9999999999999995 3344666666678887766443 2344455556666622222222111 000 0
Q ss_pred ceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhh
Q 001297 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF 324 (1105)
Q Consensus 246 ~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~ 324 (1105)
...... ....+..++. ......+..... .....+..+.+..|.+++++|.+|+............ .. +
T Consensus 457 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~---~~--~---- 525 (568)
T COG5059 457 IHKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKE---LS--L---- 525 (568)
T ss_pred HHHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhHH---HH--h----
Confidence 000000 0000000000 000111111111 4677888999999999999999998776433211110 00 2
Q ss_pred hhccccccccccccccc--cccccccccccchhhhcHHHHHHHHHHhh
Q 001297 325 FLSVKTAYLFQLYESSK--TETTGLRRKEGSYINKSLLTLGTVIGKLS 370 (1105)
Q Consensus 325 ~~~~~~~~lvDLa~s~k--~~~~g~r~~E~~~INkSL~aLg~VI~aLs 370 (1105)
.++|+++.++ ....|.++++...+|++|..+|.+|.++.
T Consensus 526 -------n~~~~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 526 -------NQVDLAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred -------hhhhccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 3899988665 45568999999999999999999998764
No 109
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.90 E-value=0.00025 Score=78.45 Aligned_cols=41 Identities=29% Similarity=0.894 Sum_probs=36.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
.|.||++=..-.|+.||+|. ||.-|.... +.||.|+.++..
T Consensus 25 RC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 69999999999999999999 999996443 779999998765
No 110
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=1.2 Score=57.67 Aligned_cols=118 Identities=22% Similarity=0.212 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 767 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~ 767 (1105)
+.+.+..+...+++..-+++...-+...+..-+..+..++.+++.++..|...+. ..+..+++..
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~--------------~~~~~l~e~~- 467 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE--------------KEERELDEIL- 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-
Confidence 3344444444444433333333334444444444555555566666666655550 0111122222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 768 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
+.|+++-..+.++..+++.++..++....-++.-.--|.++|++|...-+.+.
T Consensus 468 ---------~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~ 520 (1293)
T KOG0996|consen 468 ---------DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL 520 (1293)
T ss_pred ---------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555556666666555444433
No 111
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.86 E-value=1.1 Score=57.04 Aligned_cols=188 Identities=24% Similarity=0.313 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhh
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGE----ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 725 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~----~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~ 725 (1105)
+.+.|..++.+++.+++.|.|-+..... ..... -++..|..+-+.-.-.|..+..|..-+.+|+.++.-
T Consensus 199 nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yr-------deldalre~aer~d~~ykerlmDs~fykdRveelke 271 (1195)
T KOG4643|consen 199 NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYR-------DELDALREQAERPDTTYKERLMDSDFYKDRVEELKE 271 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHh
Confidence 3456777778888888877777632211 11111 111222211111122233334455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 001297 726 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 805 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~ 805 (1105)
-+..|.++-..|+.|| +++. +++++ ...+..+-.+++.+.-=..|++-.......|.+||..|..+.+.|.--..
T Consensus 272 dN~vLleekeMLeeQL-q~lr---arse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 272 DNRVLLEEKEMLEEQL-QKLR---ARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred hhHHHHHHHHHHHHHH-HHHH---hcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5556666656666555 2222 22222 33444444444444433445555555566666666666666655543111
Q ss_pred H------HHHH-HHHHHHHHHhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 806 Y------AKEL-ASAAAVELKNLA-GEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 806 ~------~k~l-a~a~~~qlk~l~-~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
- .+++ -..+.++.++|- .+.-++..+|.++.+.++..|.+ .++.
T Consensus 347 llq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss--s~Ee 398 (1195)
T KOG4643|consen 347 LLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS--SYEE 398 (1195)
T ss_pred HhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh--hHHH
Confidence 0 0000 011222333332 24555566777777777777644 4443
No 112
>PRK03918 chromosome segregation protein; Provisional
Probab=96.86 E-value=1.3 Score=57.95 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 001297 610 DQMDLLVEQVKMLAGEIAF 628 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~ 628 (1105)
|..+.+.+..+....++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (880)
T PRK03918 158 DDYENAYKNLGEVIKEIKR 176 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444
No 113
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.84 E-value=0.89 Score=55.40 Aligned_cols=55 Identities=25% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
+.++..+++.-+ .+.-.++++...+=..|..+..++..|++++..|+.++...-+
T Consensus 216 ~~el~~~~s~~d---ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 216 QNELFDLKSKYD---EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred hhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444444433 2355668899999999999999999999999999999944333
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.31 Score=61.64 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
+.|.|......+.|.+..|+. .|+.|.-..-|||+|+..= -.+++-++.+..+-+.|+.++|..+++..+-|
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~---sLsaEtriKldLfsaLg~a----krq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLEN---SLSAETRIKLDLFSALGDA----KRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444442 3556666778999995321 12334445555666777788887777666544
No 115
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.81 E-value=0.54 Score=58.43 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc-HHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS-DEYVDELR 766 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~-ee~~~el~ 766 (1105)
|..++..|+.....+..+...+..+.+.++++..+...++..-++.+..|...+ | +.......-. =.-+.|+.
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~----e--~~~k~~~Rs~Yt~RIlEIv 497 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKEL----E--KLPKDVNRSAYTRRILEIV 497 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--hCCCCCCHHHHHHHHHHHH
Confidence 344455555555555555555566666777777766666666666655555555 1 1111101111 12346777
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQK 799 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~k 799 (1105)
.-+.+|++||++...+...|.-+...+..++++
T Consensus 498 ~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 498 KNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999888887765
No 116
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.79 E-value=0.00038 Score=78.39 Aligned_cols=43 Identities=40% Similarity=0.947 Sum_probs=37.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc------CCCCCCCccccccee
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKISDRL 1101 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~------~~~CPiCR~~i~~~i 1101 (1105)
.|.||-++.+++-+-||||+ +|..|-.. -..||.||-.|.+.-
T Consensus 371 LCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 89999999999999999999 99999322 356999999987763
No 117
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.77 E-value=1.2 Score=57.65 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..--...||+..+.++...+.+++.+++.+
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki 304 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKI 304 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666778888888888888888887777
No 118
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.76 E-value=0.00061 Score=54.53 Aligned_cols=34 Identities=35% Similarity=0.969 Sum_probs=25.6
Q ss_pred cccccccccceEEeCCCCcccchhhhhcC--------CCCCCC
Q 001297 1059 CKVCFESPTAAILLPCRHFCLCKSCSLAC--------SECPIC 1093 (1105)
Q Consensus 1059 C~IC~~~~~~~vl~PCgH~~~C~~C~~~~--------~~CPiC 1093 (1105)
|.||++-..+-|.++|||. ||..|..+. -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999995332 249988
No 119
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.73 E-value=2.5 Score=52.06 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=89.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHH
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 688 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~ 688 (1105)
+++.-.|+-...++..|+......|+.+-.+-.+.|.+...-.......++..++.+..|...+....+ +....
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~------~~~~~ 181 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDG------NAITA 181 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCc------cHHHH
Confidence 345544544455566666666666665522333444443333333455557777777777766653332 11111
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKK 768 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~ 768 (1105)
.. .-++..++ +..+...|.+++. |...|....++...+..++ .-++..
T Consensus 182 ~~--~fl~rtl~--------~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l---------------------~l~~~~ 229 (511)
T PF09787_consen 182 VV--EFLKRTLK--------KEIERQELEERPK-ALRHYIEYLRESGELQEQL---------------------ELLKAE 229 (511)
T ss_pred HH--HHHHHHHH--------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 11 11111111 1234566777777 6667777777777777776 556667
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001297 769 VQSQETENEKLKLEHVQLSEENSGLHVQNQK 799 (1105)
Q Consensus 769 l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~k 799 (1105)
+..++.|..+||..-......+.++...+..
T Consensus 230 ~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 230 GESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7788899999998888888888888776666
No 120
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.72 E-value=0.00057 Score=54.03 Aligned_cols=34 Identities=38% Similarity=1.156 Sum_probs=29.0
Q ss_pred cccccccccceE-EeCCCCcccchhhhh------cCCCCCCC
Q 001297 1059 CKVCFESPTAAI-LLPCRHFCLCKSCSL------ACSECPIC 1093 (1105)
Q Consensus 1059 C~IC~~~~~~~v-l~PCgH~~~C~~C~~------~~~~CPiC 1093 (1105)
|.||++.....+ ++||||. ||..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999998888 9999999 9999943 23559988
No 121
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.72 E-value=0.75 Score=57.77 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=37.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
.+...+...++..+++++.....|.++...|..++..... ++.++-++ +.+.+.+|..|...+++.
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k----------Qle~~~~s----~~~~~~~~~~L~d~le~~ 478 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK----------QLESAEQS----IDDVEEENTNLNDQLEEL 478 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHh----HHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666655555443322 22222111 224445555555556666
Q ss_pred HHHHHHHHH
Q 001297 843 RESMHSRGA 851 (1105)
Q Consensus 843 k~~~~~~e~ 851 (1105)
+.....|++
T Consensus 479 ~~~~~~~~~ 487 (980)
T KOG0980|consen 479 QRAAGRAET 487 (980)
T ss_pred HHHHHHHHH
Confidence 655555554
No 122
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1 Score=53.78 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHH--------hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001297 685 MVDMQQTVTRLMSQCNEKAFELEIKSA--------DNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 685 ~~e~~q~~~~L~~~l~e~~~el~~k~a--------e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
+..+.++|.+|..++++-.-+- +.+| ++..|++|+.+.+++|.-++.++|.+++.+.+
T Consensus 10 ve~lr~eierLT~el~q~t~e~-~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEK-IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666555432221 1122 78899999999999999999999999998843
No 123
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.69 E-value=1.4 Score=48.70 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=15.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 821 LAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 821 l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
.-+++..++.....|..+|......+..++
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 333555555555555555555554444444
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=96.65 E-value=4.2 Score=53.61 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5577899999998765
No 125
>PRK09039 hypothetical protein; Validated
Probab=96.61 E-value=0.24 Score=57.72 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHH
Q 001297 757 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 831 (1105)
Q Consensus 757 ~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~ 831 (1105)
+.+.....+.+.|..++.++.+...++..|..+...|..++..|..+-..++..-+.+..++++|-.+++...++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666667777777777777777766665566666666667777776666665443
No 126
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.57 E-value=5.9 Score=54.37 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 789 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee 789 (1105)
..+.+.|.+.|..+.+++..+...+.+|..+++... ....+++...++.....-.=.-..+++.+|+..|.-+
T Consensus 121 ~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~-------~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~ 193 (1822)
T KOG4674|consen 121 QEQKRQLMELLERQKAELEALESENKDLNDQLKSST-------KTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESE 193 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888888888888882211 1223444444444443333445667888888888888
Q ss_pred hhhHHHHHHHHHHHH----hHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 790 NSGLHVQNQKLAEEA----SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 790 ~~~L~~e~~kL~~e~----~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
+.-|..++.+.+++- --+......+...|.++...+..+..+|..|.....
T Consensus 194 ~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~ 248 (1822)
T KOG4674|consen 194 NKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNE 248 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776666655521 112223455666666666666666666666655533
No 127
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.56 E-value=4.2 Score=52.53 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 919 AEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLK 957 (1105)
Q Consensus 919 ~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl~ 957 (1105)
.+|-+...+|..+|++-++.++....||+.++.-+..+.
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 344444555656666666666666666644444334443
No 128
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.56 E-value=0.0012 Score=56.99 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=34.8
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1098 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~ 1098 (1105)
.|.||++-..+-|+.||||. ||..|... -..||+|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 69999999999999999998 99999543 357999999884
No 129
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0014 Score=73.03 Aligned_cols=46 Identities=30% Similarity=0.933 Sum_probs=39.5
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhh----cCCCCCCCcccccce
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSL----ACSECPICRTKISDR 1100 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~----~~~~CPiCR~~i~~~ 1100 (1105)
..+..|+||+..+.++||.||+|. .|..|.. .++.|=.|...|...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 356689999999999999999999 9999954 457799999988753
No 130
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.53 E-value=1.5 Score=51.74 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 897 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLA 947 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~ 947 (1105)
.+.+.+...++......|++++...++-.+||..+-..+++.+..++.+.+
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888877777777777666666666666666554
No 131
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.52 E-value=3.4 Score=50.94 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=46.5
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 787 SEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 787 ~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
.-++..+..+.....-+...+.+-.+..+.+-+-+.++|.+|+..|.+|+.+|+..+..+..-...+
T Consensus 498 slEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 498 SLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555566667778888889999999999999999998888776655444
No 132
>PRK11281 hypothetical protein; Provisional
Probab=96.49 E-value=5.2 Score=53.37 Aligned_cols=89 Identities=10% Similarity=0.169 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhh
Q 001297 653 NLEREIQEKRRQMRILEQRIIENGE-------ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 725 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~~s~~-------~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~ 725 (1105)
.|+.++.+--.+++.+.+++..... ..-+..+..++++.+..+..+|.+..-.|....+....++.+...+..
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~ 163 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQA 163 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 4555555555555555555532211 111333556788888888888887766666666677777777777778
Q ss_pred HHHHHHHHHHHHHHHH
Q 001297 726 ENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l 741 (1105)
+..+.+..+...+.++
T Consensus 164 ~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 164 ALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888877
No 133
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.98 Score=57.26 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcch-hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHH
Q 001297 654 LEREIQEKRRQMRILEQRIIENGEASMANAS-MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 732 (1105)
Q Consensus 654 L~~qlrdKeeei~~L~qki~~s~~~s~~~~~-~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~ 732 (1105)
-.++++++..+|+.|+.........+....+ .-+.+-.+..+..++.|..-.|..+..|+..++.+-...--.-..|+=
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4577888888888888877655543332111 112334556666666666666666666777666665555555666666
Q ss_pred HHHHHHHHH
Q 001297 733 KVNLLEQQL 741 (1105)
Q Consensus 733 kl~~lk~~l 741 (1105)
+++++.+++
T Consensus 308 ~~kdlq~~i 316 (1200)
T KOG0964|consen 308 KIKDLQDQI 316 (1200)
T ss_pred hhHHHHHHh
Confidence 666666666
No 134
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.47 E-value=1.4 Score=54.42 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcCC
Q 001297 930 KKVEESKRREEALENDLANMWVLVAKLKKEVGS 962 (1105)
Q Consensus 930 ~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~~~ 962 (1105)
..+++.+..+.....|+..||..+..|+.++..
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888889999999999988777643
No 135
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.46 E-value=0.48 Score=58.05 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 728 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~ 728 (1105)
.+++..-++-.+-+..|.+++++....-+.+-...+. ..+|.++|.++--.+.-..--++.||++|.-++-+..
T Consensus 56 ~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~------ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 56 RDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDL------NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred hhhhhHHhhhcccccccchHHHHHHhccCCCCCcccc------hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 6777888888999999999999997664433322222 4566677776666666555566777777766665443
Q ss_pred HHHH--HHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHH
Q 001297 729 KLQE--KVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV----QNQKLAE 802 (1105)
Q Consensus 729 ~l~~--kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~----e~~kL~~ 802 (1105)
..-+ ++-.++..+.+.+++-.+..++.+..++.+..+...++-...|+.+..+..+.=++-+..|.. .++-.+.
T Consensus 130 qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlk 209 (916)
T KOG0249|consen 130 QSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLK 209 (916)
T ss_pred hHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHH
Confidence 2221 222223333333332222223334445555555444444444444444433333333333332 2233344
Q ss_pred HHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhcchhhhhhhhhh
Q 001297 803 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNGVNRKYSDGMKA 869 (1105)
Q Consensus 803 e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi----q~v~~~ar~ylq~l~~ 869 (1105)
|-..+++.+..+..++.-+.+++..+.....+|..+.+.++.++.+.+.+. +-..|+.+.|.+..+.
T Consensus 210 ermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~~ 280 (916)
T KOG0249|consen 210 ERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRRE 280 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHh
Confidence 556677777778888888888888777777777777777776666666544 4556666667664433
No 136
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.39 E-value=5.6 Score=52.96 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 858 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~ 858 (1105)
+|.....+++.+..+|.+.+..+.........-+.|++|.-.
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555588888888888888888888888888889988765
No 137
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.32 E-value=1.4 Score=52.07 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 617 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN 675 (1105)
Q Consensus 617 eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s 675 (1105)
+|.+....|++.....+. ..+.+.++|.++|++.+.+|..+...+..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~-----------~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 38 KQLKQIQKEIAALEKKIR-----------EQQDQRAKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777666665 122345578888888888887777777543
No 138
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.26 E-value=0.0014 Score=52.70 Aligned_cols=27 Identities=37% Similarity=0.987 Sum_probs=16.7
Q ss_pred cccccccccc----eEEeCCCCcccchhhhhcC
Q 001297 1059 CKVCFESPTA----AILLPCRHFCLCKSCSLAC 1087 (1105)
Q Consensus 1059 C~IC~~~~~~----~vl~PCgH~~~C~~C~~~~ 1087 (1105)
|.||++ ..+ -+++||||. ||..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 899999 777 788999999 999995443
No 139
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.26 E-value=5.8 Score=50.86 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
|.++-|++--.-|..|..-...-|++|--+++. ....+++=.|+.++.+...+.++...++
T Consensus 264 dRveelkedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 264 DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555555444555555566666666666544 3445566667777777777666666665
No 140
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0023 Score=70.33 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=32.7
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhhcC-----CCCCCCccccc
Q 001297 1057 HMCKVCFESPT---AAILLPCRHFCLCKSCSLAC-----SECPICRTKIS 1098 (1105)
Q Consensus 1057 ~~C~IC~~~~~---~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~ 1098 (1105)
-+|.||+++.+ -++++||.|. |-..|...- .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 37999998542 3889999999 999995332 57999999875
No 141
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.17 E-value=0.0028 Score=70.55 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=39.4
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccccee
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISDRL 1101 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~------~~CPiCR~~i~~~i 1101 (1105)
+.....|.||-+.-+-..++||+|. +|..|+.+. ..||+||..-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3344589999999999999999999 999998765 56999998655543
No 142
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.12 E-value=6.3 Score=49.95 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhH--------------------
Q 001297 771 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL-------------------- 830 (1105)
Q Consensus 771 ~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~-------------------- 830 (1105)
+=+.|+...++|+..|.......+.++++--.+.+.+.+....+..++++|-.--..-+.
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye 348 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYE 348 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhh
Confidence 334555666788888888888888888888888888888888877777776651000000
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhhhhc----chhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHH
Q 001297 831 ----QNAKLEKELLAARESMHSRGAAMQTVNG----VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKL 902 (1105)
Q Consensus 831 ----~N~qL~~El~~~k~~~~~~e~qiq~v~~----~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~ 902 (1105)
...-|...+..+-.++..|...+...-+ ...+|-+.. .....++.. -|.....+.+
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek-~~~~~e~q~---------------L~ekl~~lek 412 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEK-DRLESEVQN---------------LKEKLMSLEK 412 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHH
Confidence 0111222233333333334333311100 000111100 000011111 1222344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001297 903 ELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 950 (1105)
Q Consensus 903 e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~ 950 (1105)
......+++..||++++....+-.|-...+.-+.-.+-.+..||++|.
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556688888888888887777777888888888888888887765
No 143
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.03 E-value=6 Score=48.91 Aligned_cols=129 Identities=23% Similarity=0.235 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 766 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~ 766 (1105)
.++..+..++.+|++....|.....|...|+.-......++......+..++++. ......+..|+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e--------------~~a~~~v~~L~ 343 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE--------------KEASSEVSSLE 343 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHhhHH
Confidence 3444555566666655555555544444444444444444444444444444443 11122223333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
..+.+=+.+++..+.+-....+....|...++++..|+..++.-+..+..++..+-.++....
T Consensus 344 ~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~k 406 (522)
T PF05701_consen 344 AELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTK 406 (522)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444555566677777777666666666666555555555444443
No 144
>PRK09039 hypothetical protein; Validated
Probab=96.02 E-value=0.41 Score=55.78 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH-HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ-QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQ 731 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~-q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~ 731 (1105)
=|+.++...+++++.|..+|...- +...|. +....|...+.+..-+|+...+....|+.+++.+.....+++
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~-------e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~ 115 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELA-------DLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE 115 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHH
Confidence 477888888888888888885411 111111 122223333333333333444455555555554444444555
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHH
Q 001297 732 EKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 811 (1105)
Q Consensus 732 ~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la 811 (1105)
.++..+...| .+.++......-++..|.+++..|..+...|+..+.-+-.....+...+
T Consensus 116 ~~~~~l~~~L---------------------~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 116 GRAGELAQEL---------------------DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444 3444444444455556666666666666666666666666666666666
Q ss_pred HHHHHHHHhhHHH-HHHhhHHHHHHHHHH
Q 001297 812 SAAAVELKNLAGE-VTKLSLQNAKLEKEL 839 (1105)
Q Consensus 812 ~a~~~qlk~l~~e-v~kL~~~N~qL~~El 839 (1105)
..++.+|.....+ +..|.....++...|
T Consensus 175 ~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 175 ADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666677666544 777766655555544
No 145
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.00 E-value=0.0037 Score=54.05 Aligned_cols=39 Identities=41% Similarity=1.042 Sum_probs=20.6
Q ss_pred ccccccccccce-EEeCCCCcccchhhhhcC--CCCCCCcccc
Q 001297 1058 MCKVCFESPTAA-ILLPCRHFCLCKSCSLAC--SECPICRTKI 1097 (1105)
Q Consensus 1058 ~C~IC~~~~~~~-vl~PCgH~~~C~~C~~~~--~~CPiCR~~i 1097 (1105)
.|.+|.+-.+.. +++-|.|. ||..|...+ ..||+|+.|-
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 799999977766 57999999 999997665 6699999875
No 146
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.99 E-value=0.96 Score=56.30 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 782 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
-..-|.+++..|......-..+.....+-.+.+..+.+.++.++..-+....+|..+++..
T Consensus 420 ~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 420 HRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666666666655555554545555556666666777777777777777776665543
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.92 E-value=2 Score=50.60 Aligned_cols=85 Identities=25% Similarity=0.284 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 791 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~ 791 (1105)
....|+.....++.++..|+.++|.|+-|+ .+.... -+|.+.+-+|...|.-+..
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~------~kq~Is-------------------~e~fe~mn~Ere~L~reL~ 385 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQL------RKQGIS-------------------TEQFELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HhcCCC-------------------HHHHHHHHHHHHHHHHHHH
Confidence 455666667777888888888888888887 222111 2455666677777888888
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001297 792 GLHVQNQKLAEEASYAKELASAAAVELKNL 821 (1105)
Q Consensus 792 ~L~~e~~kL~~e~~~~k~la~a~~~qlk~l 821 (1105)
++..+.++|..+...++-.|-+....++++
T Consensus 386 ~i~~~~~~L~k~V~~~~leaq~~~~slek~ 415 (622)
T COG5185 386 KINIQSDKLTKSVKSRKLEAQGIFKSLEKT 415 (622)
T ss_pred HhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888888888886666666555554444333
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.86 E-value=2.3 Score=48.33 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhh---ccCC---CCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQ---SVND---PDG-----------SKVQIQNLEREIQEKRRQMRILEQRIIE 674 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~---~~~~---~~~-----------~~~Q~q~L~~qlrdKeeei~~L~qki~~ 674 (1105)
+....+++..|.-|+..+...|+=++.- +... +.+ ..++...|.++++..+++-..|..-...
T Consensus 106 L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 106 LGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666667777777766666511 1111 111 1245677888888887777666554432
Q ss_pred hcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 001297 675 NGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG 754 (1105)
Q Consensus 675 s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~ 754 (1105)
....+ ...+++.-+ =+..|=+||.+|..++..|..+|..-.+..
T Consensus 186 L~~et-----------------~~~EekEqq------Lv~dcv~QL~~An~qia~LseELa~k~Ee~------------- 229 (306)
T PF04849_consen 186 LKTET-----------------DTYEEKEQQ------LVLDCVKQLSEANQQIASLSEELARKTEEN------------- 229 (306)
T ss_pred hhHHH-----------------hhccHHHHH------HHHHHHHHhhhcchhHHHHHHHHHHHHHHH-------------
Confidence 22100 011111111 122344555555555555555544433332
Q ss_pred CCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 755 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 828 (1105)
Q Consensus 755 ~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL 828 (1105)
..|.+||-.|..++..|..-...+..+++.|..--...|+--..+..+|.+|-++-...
T Consensus 230 ---------------~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 230 ---------------RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555566666666666666644444444444545544444444433
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.85 E-value=4.9 Score=46.44 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=61.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 687 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e 687 (1105)
..-|+|.++-|+.-+..|+..-...+.. -.+.-++...++....++-+.+.++...... ....
T Consensus 72 gVfqlddi~~qlr~~rtel~~a~~~k~~-----------~e~er~~~~~El~~~r~e~~~v~~~~~~a~~------n~~k 134 (499)
T COG4372 72 GVFQLDDIRPQLRALRTELGTAQGEKRA-----------AETEREAARSELQKARQEREAVRQELAAARQ------NLAK 134 (499)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3456777777777777777665444430 0122234444444444444444444433322 2234
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+|.+.++..+-...--+|.-.+++-+.|.+|++..-++..+|+.-+..||.+.
T Consensus 135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~ 188 (499)
T COG4372 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV 188 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665544444444455666666666666666666664444444443
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.79 E-value=1.9 Score=46.17 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 689 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~ 689 (1105)
-+|-||+.|+|+.-.|++...+.+- .|..++++....+......+... .
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv------------------~Lr~ql~e~~~~l~~~~~~~~~l-------------~ 58 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIV------------------SLRAQLRELRAELRNKESQIQEL-------------Q 58 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHhhHHHHHHH-------------H
Confidence 4588999999999999988666554 24444444444444444444311 1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 737 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~l 737 (1105)
..+..-..+++...-||..+..+...|++.+...+.++..|+..+..+
T Consensus 59 ~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 59 DSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 111122223333333444455566677777777777777777777765
No 151
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0027 Score=70.71 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT 1095 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~ 1095 (1105)
...|.||++.....+++||+|. ||..|.... -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3479999999988899999999 999997654 46999993
No 152
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=10 Score=49.26 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 811 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 811 a~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
++-.+-++..+.+++++|..+...++..++.++.++...-
T Consensus 858 ~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 858 INEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666665554443
No 153
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0035 Score=69.05 Aligned_cols=47 Identities=19% Similarity=0.601 Sum_probs=40.2
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1101 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i 1101 (1105)
.-|..|.||.....+-|+.-|+|. ||..|+..- ..|++|.+.+.+..
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 356689999999999999999999 999997543 56999999887754
No 154
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=2.9 Score=52.29 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
......+.|+.+..++..+..+...+..++
T Consensus 731 ~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 731 ASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777777777776666666666
No 155
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.68 E-value=0.37 Score=52.97 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
...+++....+.|+-.|++|+..|.|.-..|....++|+.+.-......+-+..||-..-+.|.+|+.+..++..||+..
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455677788999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH
Q 001297 843 RESM 846 (1105)
Q Consensus 843 k~~~ 846 (1105)
+...
T Consensus 129 Q~~~ 132 (307)
T PF10481_consen 129 QQAA 132 (307)
T ss_pred HHhh
Confidence 7444
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.67 E-value=2.3 Score=45.08 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
+...+++|+..|..+...|..+|.++.. +...+...-.+|..+-..+|..+-+++.
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~---------------------e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLA---------------------ERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------hhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455566666666666666666666666 4555555555555555555555555543
No 157
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.58 E-value=0.0033 Score=65.11 Aligned_cols=49 Identities=20% Similarity=0.677 Sum_probs=40.5
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceee
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLF 1102 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~ 1102 (1105)
..-|..|.||.....+-|+..|||. ||..|+..- ..|-+|.+...+.+.
T Consensus 193 e~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 193 EKIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW 245 (259)
T ss_pred CCCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence 3457799999999999999999999 999997542 569999987666543
No 158
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.58 E-value=10 Score=48.20 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH
Q 001297 761 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 826 (1105)
Q Consensus 761 ~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~ 826 (1105)
.+++....+..+..-+++.+.++..|.+...++..+.+.+.......-++..+++.||..+..++.
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666666655554333333444444444433333333
No 159
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.57 E-value=0.0034 Score=79.95 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhh
Q 001297 646 GSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 725 (1105)
Q Consensus 646 ~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~ 725 (1105)
+.+.|++.|..+...--+....|+..+..+.... + .+-.+.++|..|...+.+..-+.+....++..|++++..+..
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~-~--qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~ 405 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKKARALK-S--QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEE 405 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444444444444443322211 1 233556777777777777766666667788889999998888
Q ss_pred HHHHHHHHHHHHHHHH
Q 001297 726 ENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l 741 (1105)
+...+..+.+.|+...
T Consensus 406 eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 406 EKERLQEERDSLRETN 421 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887754
No 160
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.46 E-value=1.2 Score=49.01 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+..+.+++++++...=.+.-+..+...++.|...-+.++.++++++++++.++
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555545555555666777777777777777777777777777
No 161
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.38 E-value=7.2 Score=49.96 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001297 896 DPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 950 (1105)
Q Consensus 896 ~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~ 950 (1105)
.+..+..++.+.++.+.+|+..+.+.....+++-.++-+.+++.+++...=..+|
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888888888886665555555444444444444444333333
No 162
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.32 E-value=4.2 Score=43.64 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 691 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 691 ~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+|+=|+.||+|.-.|+--|..|+-.|.-+|.+..+........+..++..+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466666666666666666666666666666666665555555555555544
No 163
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.0085 Score=67.50 Aligned_cols=44 Identities=30% Similarity=0.742 Sum_probs=32.1
Q ss_pred CCccccccccccccc-------------ceEEeCCCCcccchhhh----hcCCCCCCCcccc
Q 001297 1053 DPNSHMCKVCFESPT-------------AAILLPCRHFCLCKSCS----LACSECPICRTKI 1097 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~-------------~~vl~PCgH~~~C~~C~----~~~~~CPiCR~~i 1097 (1105)
.+++..|.||++... .--=+||||. +--.|- .+.+.|||||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 346679999998611 1234799997 888883 4557899999983
No 164
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.20 E-value=5.5 Score=48.77 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhccC-CCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCc-
Q 001297 611 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDGSK---VQIQNLEREIQEKRRQMRILEQRIIENG---EASMAN- 682 (1105)
Q Consensus 611 ~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~-~~~~~~---~Q~q~L~~qlrdKeeei~~L~qki~~s~---~~s~~~- 682 (1105)
-.+.|.+|++.+..++......|..|-...+- +|+... .++..++.++...+.++..++.++.... ...++.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~ 241 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVL 241 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 35788888888889998888888888765543 233221 2345566666666666555555542111 111110
Q ss_pred -----chhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 001297 683 -----ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGT 757 (1105)
Q Consensus 683 -----~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~ 757 (1105)
.....+.+++..|..+ .+.+..++...--....++.+++.++.++.+..............
T Consensus 242 ~~~~~~~~~~l~~~l~~l~~~--------------l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~ 307 (498)
T TIGR03007 242 LAGSSVANSELDGRIEALEKQ--------------LDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEI 307 (498)
T ss_pred CcccccCCCchHHHHHHHHHH--------------HHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccc
Confidence 0111233333333333 334445556666677777888888888874443321111111111
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001297 758 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 758 ~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
....+.++...+..-..+++.++.+...|..+...++.+..++
T Consensus 308 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 308 ANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2223344444444444555555555555555555554444433
No 165
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.15 E-value=12 Score=46.87 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=113.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHh
Q 001297 719 QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKL----------EHVQLSE 788 (1105)
Q Consensus 719 qL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~----------e~~~L~E 788 (1105)
.|..++..+.++..+||.|-..+-.-.++..............+..+......=..|++.+.+ ....|.+
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~ 351 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK 351 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 455566666677777777777663222222111112222333333333333333344444422 3344555
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhc--chhhhhh
Q 001297 789 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM-QTVNG--VNRKYSD 865 (1105)
Q Consensus 789 e~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi-q~v~~--~ar~ylq 865 (1105)
+...+......+.......+-.++.+...++.+.++++.++.+-..+...+..++..-..-+.++ .+... ..+.+++
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666776666677777888888888888888887777777776665553333322222 11111 2222222
Q ss_pred hhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001297 866 GMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALEND 945 (1105)
Q Consensus 866 ~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~E 945 (1105)
+ ..++ .-..........-.+.+..|..++.+..--.+++.+.+.++......|..+
T Consensus 432 -----------k-----~nLP--------Glp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 432 -----------K-----SNLP--------GLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred -----------H-----cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 123444555566667777777777666655677778888888888887776
Q ss_pred HHhh
Q 001297 946 LANM 949 (1105)
Q Consensus 946 L~~m 949 (1105)
..+|
T Consensus 488 t~~l 491 (560)
T PF06160_consen 488 TEEL 491 (560)
T ss_pred HHHH
Confidence 6443
No 166
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.10 E-value=1.3 Score=48.56 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001297 725 SENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 804 (1105)
Q Consensus 725 ~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~ 804 (1105)
.+++++.++.-.+.++... .-+++.-|-+-+.+=.-|.+.|.....+|.-.+..++.+.+-|+-
T Consensus 9 a~iae~k~e~sAlhqK~~a--------------KtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa-- 72 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGA--------------KTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAA-- 72 (389)
T ss_pred HHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHh--
Confidence 4566777777777777622 223444555555565667788888888888888888888887765
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccC
Q 001297 805 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISG 884 (1105)
Q Consensus 805 ~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~ 884 (1105)
..+|.-.-+..+-.+|+.-|.+--.+|.+|+-+-+++....+....-| +-+-+..+...-+-++.-- -++
T Consensus 73 -~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~-------elfReTeAq~ese~~a~as--eNa 142 (389)
T KOG4687|consen 73 -CGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHGDC-------ELFRETEAQFESEKMAGAS--ENA 142 (389)
T ss_pred -cCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchH-------HHHHHHHHHHHHHHhcccc--ccc
Confidence 444555556666678888888888888888877665554444433333 1111111111000000000 000
Q ss_pred ccccccCCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 885 VVSDDFDSWNLDPDDLKLELQA-RKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 885 ~~~~~~~~~w~~~~~~k~e~~a-~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
.+. ..+-.|+.-+..+....+ .+.+-+.|+..+++--.+.|||.-..++.+.+...|++||
T Consensus 143 arn-eeelqwrrdeanfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhEL 204 (389)
T KOG4687|consen 143 ARN-EEELQWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHEL 204 (389)
T ss_pred ccc-hHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHH
Confidence 011 111225543344433333 3345567888888877889999999999999999999998
No 167
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.97 E-value=13 Score=45.82 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 898 DDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 898 ~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
..+..+...-..-+++||.++.++...-+||+.+++.. ..|+.|..||
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL 353 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL 353 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence 34566777777888899999999988888888777655 7788888887
No 168
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.96 E-value=0.014 Score=52.41 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=27.1
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhhh----cCCCCCCCc
Q 001297 1058 MCKVCFESP-------------TAAILLPCRHFCLCKSCSL----ACSECPICR 1094 (1105)
Q Consensus 1058 ~C~IC~~~~-------------~~~vl~PCgH~~~C~~C~~----~~~~CPiCR 1094 (1105)
.|.||++.. ..+++++|||. |...|.. ....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499999855 45678899999 9999953 235799998
No 169
>PF13514 AAA_27: AAA domain
Probab=94.85 E-value=23 Score=48.05 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCC-CCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSS-GQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSE 788 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~-~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~E 788 (1105)
..+...++.++...+.+...++..+...+.+....+....-... ......+.+..+. .+.....+++.+...+..+..
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~-~l~~~~~~~~~~~~ri~~~~~ 757 (1111)
T PF13514_consen 679 EEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLE-ELREALAEIRELRRRIEQMEA 757 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555433331111111 1122222222222 344455566666666666666
Q ss_pred hhhhHHHHHHHHHHHHhH------HHHHHHHHHHHHHh---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 789 ENSGLHVQNQKLAEEASY------AKELASAAAVELKN---LAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 789 e~~~L~~e~~kL~~e~~~------~k~la~a~~~qlk~---l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
+...+..+...|...-.. .-+.+..+...++. ...++.++..+...++.++...+..+..++.++
T Consensus 758 ~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 758 DLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666543221 01233333222222 223344444455555555555555555555555
No 170
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.82 E-value=0.0078 Score=76.82 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 898 DDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKL 956 (1105)
Q Consensus 898 ~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl 956 (1105)
..++.+.....++..++++++..++..-.+|...+.++......++..+.+...++.+|
T Consensus 346 ~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RL 404 (722)
T PF05557_consen 346 VQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRL 404 (722)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666666555545554444444444444444443333333333
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=16 Score=45.79 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
-..||+.++++++.+.+-+.+|..+.+.|.+
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455666666666666666666666555554
No 172
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.63 E-value=9.1 Score=43.21 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 789 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee 789 (1105)
...+..|.+||..|+.....|+-++...+..|-++.=.-...-....+..-.+.|++...+.......+|-.....+.|-
T Consensus 143 kd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 143 KDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999998888888443311000000112334455666767777777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001297 790 NSGLHVQNQKL 800 (1105)
Q Consensus 790 ~~~L~~e~~kL 800 (1105)
..+|..+|--|
T Consensus 223 L~QlqsEN~LL 233 (305)
T PF14915_consen 223 LSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777776433
No 173
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.55 E-value=20 Score=46.12 Aligned_cols=121 Identities=23% Similarity=0.232 Sum_probs=86.7
Q ss_pred HHHHHHHHhhhhhhHH----HHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFE----LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL 765 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~e----l~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el 765 (1105)
++..+.+..|+.+..+ |....|++..|..-|.+++..+.+|.+.-......+ ..|
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~---------------------~~l 139 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEI---------------------EDL 139 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHH
Confidence 3344444444444333 334466888888888888877777777655555444 333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 766 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 766 ~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
. .-++-+++|+..|.=+...+..+++--++|-.|-..-|-+|--|+-.-++.|.||+++=++|+.=
T Consensus 140 ~-------~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 140 M-------ARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23466777777777778888888888888888888889999888888899999999999999875
No 174
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.51 E-value=0.01 Score=76.83 Aligned_cols=229 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh-HHHHHH
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASM-VDMQQT 691 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~-~e~~q~ 691 (1105)
-.|..++|.|-..|......|. +++.--.+..++.+|...+++.|-.++..+++.+.....+ ..-..+
T Consensus 35 ~~l~k~~kelq~~i~el~eeLe-----------~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~E 103 (859)
T PF01576_consen 35 AQLQKKIKELQARIEELEEELE-----------SERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAE 103 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHH
Confidence 3344455555555555444443 3334444677777888888888888887777655542211 123568
Q ss_pred HHHHHHhhhhhhHHHHHHH--------HhHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHhhccCCCCCCCC-C
Q 001297 692 VTRLMSQCNEKAFELEIKS--------ADNRILQEQLQNK-------CSENKKLQEKVNLLEQQLACQNGDKSAGSSG-Q 755 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~--------ae~~~lqeqL~~a-------~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~-~ 755 (1105)
+.+|+.+|++....++... ..+..|.+||... +-.-..|+.+++.|..++-.... .+...+. .
T Consensus 104 l~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k-~k~~~Ek~~ 182 (859)
T PF01576_consen 104 LAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK-AKQEAEKKR 182 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHhHH
Confidence 8889999988666555432 2334444444443 33333444445554444411111 0001111 1
Q ss_pred CCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh--------------h
Q 001297 756 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKN--------------L 821 (1105)
Q Consensus 756 ~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~--------------l 821 (1105)
..++..+.+++..+......+..+...+..|..++..|..+++-+-.......-.-+.+..||.+ |
T Consensus 183 K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L 262 (859)
T PF01576_consen 183 KQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQAL 262 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhh
Confidence 23444555555444443344444444444444444444444333322222222222223333332 2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 822 AGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 822 ~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
...+..+..++..|++.++.-......|..++
T Consensus 263 ~~~l~~le~e~~~L~eqleeE~e~k~~l~~ql 294 (859)
T PF01576_consen 263 EKQLRQLEHELEQLREQLEEEEEAKSELERQL 294 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33344444444444444444444555555555
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.49 E-value=5.7 Score=42.92 Aligned_cols=135 Identities=22% Similarity=0.298 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKK 768 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~ 768 (1105)
..+|..++.......-.+....++|..|.+-|..+..+..+|++++....+.- ..+..+++.
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK------------------~~L~~~k~r 94 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK------------------QSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 33444444433333334445577899999999999999999999998876665 233445555
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001297 769 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 848 (1105)
Q Consensus 769 l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~ 848 (1105)
+.....++..++.+...|.+...++..+...|-. .|.++-.+. -.+....|--|+..+....+..-.
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~-------kf~~~i~ev------qQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYR-------KFESAIQEV------QQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666555544 222221111 112233444455556666666666
Q ss_pred HHHhhh
Q 001297 849 RGAAMQ 854 (1105)
Q Consensus 849 ~e~qiq 854 (1105)
.++|+.
T Consensus 162 keaqL~ 167 (201)
T PF13851_consen 162 KEAQLN 167 (201)
T ss_pred HHHHHH
Confidence 666663
No 176
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.49 E-value=12 Score=43.17 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=77.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 769 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l 769 (1105)
..++.|..+-.+..-.| ..|...|+++|.++...|.-|++++.+.+... .. .+..... +....+...+
T Consensus 68 ~~La~lL~~sre~Nk~L---~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~------~~--~~~~~~~-~ere~lV~qL 135 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKL---KEEVEELRQKLNEAQGDIKLLREKLARQRVGD------EG--IGARHFP-HEREDLVEQL 135 (319)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh------cc--ccccccc-hHHHHHHHHH
Confidence 34555555555443332 35677888888888888888888887776554 11 1111111 2222333333
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHH-------HHHhhHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE-------VTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~e-------v~kL~~~N~qL~~El~~~ 842 (1105)
.+=..+++.|+.+...+.+|+..+.++ -.+.+..+..+-.||-.+..- |+-|-.+|+-|.+.+...
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~E-------RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTE-------RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666655555444 444455555555555444332 666677777766666655
Q ss_pred HHHHHHHH
Q 001297 843 RESMHSRG 850 (1105)
Q Consensus 843 k~~~~~~e 850 (1105)
+++..-..
T Consensus 209 qeE~~l~k 216 (319)
T PF09789_consen 209 QEEKELLK 216 (319)
T ss_pred HHHHHHHH
Confidence 55554333
No 177
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.48 E-value=0.43 Score=51.13 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
..-.++++....-+..|.+|...|..++..+.+ ++.+|+.+|..|.+.....+..
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~---------------------k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEE---------------------KLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666677777777777777777776 8888899999998886666533
No 178
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.46 E-value=4.3 Score=49.83 Aligned_cols=129 Identities=22% Similarity=0.169 Sum_probs=68.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 764 ELRKKVQSQETENEKLKLEHV-QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~-~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
|+...-.+|+.+||++++++. .|-++-.++..+.++=.. ..++. ++.+.|..-.+++.|... .+.+..+.
T Consensus 842 EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~---~Fqe~---LK~~kKe~k~e~~~l~k~---qrkdalkq 912 (1187)
T KOG0579|consen 842 EMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMR---AFQER---LKQEKKEFKQELTMLSKV---QRKDALKQ 912 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHH---HHHHHHHHHHHHhhhhHH---HHHHHHHH
Confidence 333344678889999988765 466777777777766433 11111 222222222333333322 23332222
Q ss_pred HHHHHHHHHhh---hhhhc---chhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001297 843 RESMHSRGAAM---QTVNG---VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEA 916 (1105)
Q Consensus 843 k~~~~~~e~qi---q~v~~---~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~ 916 (1105)
+-+--..+.|+ -+|.. ++.+.|+.+..+-+++++... ++=++-.-++..+-|+
T Consensus 913 r~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iE---------------------recLm~Kq~LlRarEa 971 (1187)
T KOG0579|consen 913 RKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIE---------------------RECLMQKQNLLRAREA 971 (1187)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHH
Confidence 22222333333 22222 667777777777777777632 3344555566667777
Q ss_pred HHHHHH
Q 001297 917 ALAEKE 922 (1105)
Q Consensus 917 el~~k~ 922 (1105)
+||+..
T Consensus 972 aiWElE 977 (1187)
T KOG0579|consen 972 AIWELE 977 (1187)
T ss_pred HHhHhH
Confidence 777665
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.40 E-value=6.1 Score=48.96 Aligned_cols=105 Identities=23% Similarity=0.176 Sum_probs=62.4
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccccCC
Q 001297 813 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDS 892 (1105)
Q Consensus 813 a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~ 892 (1105)
++..-+....+.+.||..++.++..||..++.. -+|.++....- .+..|
T Consensus 153 ~aee~~~~~eer~~kl~~~~qe~naeL~rarqr-----------------------eemneeh~~rl-------sdtvd- 201 (916)
T KOG0249|consen 153 KAEEHSGNIEERTRKLEEQLEELNAELQRARQR-----------------------EKMNEEHNKRL-------SDTVD- 201 (916)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhhhhcccc-------ccccH-
Confidence 344455667778888888888888887766622 22333333211 11112
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001297 893 WNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 950 (1105)
Q Consensus 893 ~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~ 950 (1105)
.| ....+++.++.++....|+.++....+.-++++..-+.+...++.|..|++.|.
T Consensus 202 Er--lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 202 ER--LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11 223456666777777777777766666666666666666666667777775555
No 180
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.36 E-value=21 Score=45.49 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 648 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 648 ~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
..+++.|..++++...+++.+.+.+. .++.++..+...+++..-+++. .-..+.++.+..+.++
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~-------------~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei 271 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIA-------------HLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQL 271 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHH
Confidence 34555666666666666666655554 3444455444444443333332 2334555566777777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 001297 728 KKLQEKVNLLEQQLACQN 745 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l~~~~ 745 (1105)
..+++++...+.++.+..
T Consensus 272 ~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 272 KEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777777774433
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.34 E-value=2.2 Score=42.85 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHH---HhHHHHHHHHhhhhhH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKS---ADNRILQEQLQNKCSE 726 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~---ae~~~lqeqL~~a~~e 726 (1105)
++..|..++......++....++..... |+..+........+.+.-||-.-+ .+...++++++....+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~---------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE---------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQE 74 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666555555543332 445555555555555444443333 3777788899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001297 727 NKKLQEKVNLLEQQL 741 (1105)
Q Consensus 727 ~~~l~~kl~~lk~~l 741 (1105)
+..|+.+++.++..+
T Consensus 75 ~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 75 INELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988888
No 182
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=94.25 E-value=0.034 Score=61.61 Aligned_cols=53 Identities=13% Similarity=-0.113 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcccccceeec
Q 001297 1051 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTKISDRLFA 1103 (1105)
Q Consensus 1051 ~~~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~--~~CPiCR~~i~~~i~i 1103 (1105)
+.+-...+|.+|-..-..+++.||+|..+|..|+... ..||+|...+...++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 5566778999999999999999999999999997643 6799999888777776
No 183
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.24 E-value=0.013 Score=74.78 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+++-++++.|+++++.|.+.|..+...+..|-+
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777655555444433
No 184
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=21 Score=44.93 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHHhhc
Q 001297 198 PGIIPLAIKDVFSIIQ 213 (1105)
Q Consensus 198 ~GIipra~~~LF~~i~ 213 (1105)
.||-+.++..|+....
T Consensus 44 S~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 44 SGLPTPVLAQIWALSD 59 (1118)
T ss_pred cCCChHHHHHHHHhhh
Confidence 4677777777776543
No 185
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.23 E-value=3.9 Score=41.79 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=49.0
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHH---h
Q 001297 695 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ---S 771 (1105)
Q Consensus 695 L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~---~ 771 (1105)
|+.+-+.-.-.++...+.++.+.+++..++.+|..|++++..+..++ ..+++.+.+++..+. +
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~el--------------d~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEEL--------------DKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHH
Confidence 34444444444444455666667777777777777777777777766 112233333332211 1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.....+.|.+.+..|.++.......+.-..+
T Consensus 71 ~~~~~E~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 71 RKSNAEQLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1223345666666666666555555544444
No 186
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=22 Score=44.89 Aligned_cols=60 Identities=25% Similarity=0.541 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcccccccccccccceEEeCCCCcccchhhhh-----cCCCCCCCcccccce--eecc
Q 001297 1032 ARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPICRTKISDR--LFAF 1104 (1105)
Q Consensus 1032 ~~l~~~l~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~-----~~~~CPiCR~~i~~~--i~if 1104 (1105)
+.|.++++..++.. .|++|.++++++|+..|||+ ||..|.. +.++||.|..+|+.. .+||
T Consensus 631 ~~L~EElk~yK~~L------------kCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 631 EVLAEELKEYKELL------------KCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHHHHHHHHhce------------eCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 45667777777766 89999999999999999998 9999954 458899999999753 4454
No 187
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.09 E-value=19 Score=44.03 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc-CCCcchhHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN---GEA-SMANASMVD 687 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s---~~~-s~~~~~~~e 687 (1105)
.+.|||-...|.+.+..-...+..+..-... -..-+..|+.++..|+++++.|.+.+... +.. .-+..++-.
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~----~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQH----MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3566666666666655555555422211100 01125589999999999999888777211 110 112236666
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSA 711 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~a 711 (1105)
|-++-.+|...+++...+++....
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776543
No 188
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.08 E-value=33 Score=47.44 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 622 LAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 622 l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
-.|.-|-...-..|+.|.. .++..|..++..+..++..|.+++
T Consensus 730 ~IG~~aR~~~R~~ri~el~--------~~IaeL~~~i~~l~~~l~~l~~r~ 772 (1353)
T TIGR02680 730 YIGAAARERARLRRIAELD--------ARLAAVDDELAELARELRALGARQ 772 (1353)
T ss_pred HhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666565554 456666677777777776666665
No 189
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.06 E-value=4.3 Score=43.60 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 713 NRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 713 ~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
-..|+.+|...+.+..+..++|..|..++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 190
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.028 Score=65.93 Aligned_cols=46 Identities=28% Similarity=0.748 Sum_probs=38.7
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
..++..|.||+...-..|..||||- +|..|..++ ..||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 3566789999999989899999999 999995444 569999998765
No 191
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.21 Score=53.96 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=34.7
Q ss_pred cccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001297 1057 HMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1100 (1105)
Q Consensus 1057 ~~C~IC~~~~~~----~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 1100 (1105)
..|+||.+.-++ ++|-||||+ +|..|...+ ..||+|..+...+
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred eecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 479999985444 678999998 999998776 4599999987654
No 192
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.02 Score=70.59 Aligned_cols=41 Identities=34% Similarity=0.838 Sum_probs=33.8
Q ss_pred ccccccccccccc-----eEEeCCCCcccchhhhh----cCCCCCCCcccc
Q 001297 1056 SHMCKVCFESPTA-----AILLPCRHFCLCKSCSL----ACSECPICRTKI 1097 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~-----~vl~PCgH~~~C~~C~~----~~~~CPiCR~~i 1097 (1105)
...|.||.+.-.. .-.+||+|. ||..|-. +...||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 3479999998877 789999998 9999943 347799999943
No 193
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.038 Score=60.58 Aligned_cols=44 Identities=30% Similarity=0.773 Sum_probs=33.9
Q ss_pred Ccccccccccccccce-EEeCCCCcccchhhhhcC------CCCCCCccccc
Q 001297 1054 PNSHMCKVCFESPTAA-ILLPCRHFCLCKSCSLAC------SECPICRTKIS 1098 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~-vl~PCgH~~~C~~C~~~~------~~CPiCR~~i~ 1098 (1105)
.++.+|++|-+.++.- +++||||. +|..|.... -.||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 3566999999988664 55669998 999995432 25999998765
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.77 E-value=4.7 Score=45.73 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 788 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
.|..+|+++|++|..+-.-.-++|...+.....|-+=|.++..+|++|...|.+.+.+...-+
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 456678888888888888888899999888888888889999999999988888776554433
No 195
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.75 E-value=0.031 Score=60.94 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=31.2
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||..+. ...++..|. ++..+.+.--..|| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 3599999764 345666775 34444444222244 47899999999999875
No 196
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.66 E-value=12 Score=44.38 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=60.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 791 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~ 791 (1105)
+++.=|-+.++..+.+.-|+++|..|+-+. .+ +...-+-+++ =++-+|+|.-++-.+.=|+.
T Consensus 325 tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~------~k-----QqvfvDiink-------Lk~niEeLIedKY~viLEKn 386 (527)
T PF15066_consen 325 TNRKQQNRIQDLQCSNLYLEKKVKELQMKI------TK-----QQVFVDIINK-------LKENIEELIEDKYRVILEKN 386 (527)
T ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHh------hh-----hhHHHHHHHH-------HHHHHHHHHHhHhHhhhhhh
Confidence 344445566677777777778777776665 11 1111122222 23445556555555556666
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 792 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 792 ~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.+...++.|-+-....+-.---.+.+.+.|.=++.|+-+.-..|.+.
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 66666666655333333333334555566666777777766666654
No 197
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.65 E-value=25 Score=43.93 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 769 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l 769 (1105)
..+..+..+-..+...+-..+...+.+-+.|..-..+++-+..++.++.+.. . .++.....+...+
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~------~--------~~~~~~krl~~~l 428 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAI------L--------GSKDDEKRLAEEL 428 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h--------hccchHHHHHHHh
Confidence 3444444444444444444556777777777777777777777777777666 1 1122223333344
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
-.+..+.|.|+.=++.+-..+..+...++.+..+-..++....-..-++|||-..+......+..-+.+..-+.+-+.++
T Consensus 429 ~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~ 508 (716)
T KOG4593|consen 429 PQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQY 508 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 44555566666555555555555555566666666666666666666666666666666666655555544333333333
Q ss_pred H
Q 001297 850 G 850 (1105)
Q Consensus 850 e 850 (1105)
.
T Consensus 509 ~ 509 (716)
T KOG4593|consen 509 L 509 (716)
T ss_pred H
Confidence 3
No 198
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.034 Score=63.79 Aligned_cols=42 Identities=29% Similarity=0.764 Sum_probs=32.1
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhhc----C-CCCCCCcccccc
Q 001297 1057 HMCKVCFESPT---AAILLPCRHFCLCKSCSLA----C-SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~---~~vl~PCgH~~~C~~C~~~----~-~~CPiCR~~i~~ 1099 (1105)
..|.||++... .+.++||.|- |=..|... . ..||+|+..|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 38999999553 4777999999 88889432 2 349999997754
No 199
>PRK01156 chromosome segregation protein; Provisional
Probab=93.52 E-value=35 Score=45.13 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCCcHHHHHHH----HHHHHhhHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQN-GDKSAGSSGQGTSDEYVDEL----RKKVQSQETENEKLKLEHVQL 786 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~-e~~~~~~~~~~~~ee~~~el----~~~l~~q~~E~e~lk~e~~~L 786 (1105)
....|++.+.....++.++...+..++....... +...+.-++ ...++...++ ...+..-..+++.++.++..|
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~-~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT-TLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666555554332111 111222111 1113333333 333333334455555555555
Q ss_pred HhhhhhHHHHHHHH
Q 001297 787 SEENSGLHVQNQKL 800 (1105)
Q Consensus 787 ~Ee~~~L~~e~~kL 800 (1105)
..+...+.....+|
T Consensus 496 ~~~~~~~~~~~~~l 509 (895)
T PRK01156 496 DEKIVDLKKRKEYL 509 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444443
No 200
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.52 E-value=12 Score=44.97 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=20.6
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 711 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 711 ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+|+-|.++++..=.++..|++++-+--.-+
T Consensus 97 ~~nesLeEqv~~~~d~vvql~hels~k~ell 127 (596)
T KOG4360|consen 97 EDNESLEEQVDAPWDRVVQLGHELSRKDELL 127 (596)
T ss_pred hhhhhhHhhhcchHHHHHHhhhhhhhhhhhh
Confidence 3677788888877777777776665444333
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=2.5 Score=52.85 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=19.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 001297 720 LQNKCSENKKLQEKVNLLEQQLACQNGDK 748 (1105)
Q Consensus 720 L~~a~~e~~~l~~kl~~lk~~l~~~~e~~ 748 (1105)
|.+...+..+++.++..+|.+...+++..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~t 829 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERT 829 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777778888887777766633
No 202
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.39 E-value=39 Score=45.36 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
.+.++..+.+--.+++.+.+++..... ......+..+++|++....++|.+..-++.......+.+...+++.--..
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~ 146 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ 146 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH
Confidence 335666666666666666666542211 12133345677777776666655443333322222222222332222222
Q ss_pred HHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQL 741 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l 741 (1105)
.++++.+...+.++
T Consensus 147 ~~~~~~l~~i~~~L 160 (1109)
T PRK10929 147 TEARRQLNEIERRL 160 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777777776
No 203
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.36 E-value=0.045 Score=49.16 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
....|.||.+-.++-|+.||||. ||..|... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 34589999999999999999988 99999432 3569999998875
No 204
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.33 E-value=19 Score=45.50 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHhhHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLE----HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e----~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.||-+++..|++|+.++-.. =..|.+.+.....++.++--|..-+.--++.++..|+.--+|---|-...+|=.+|
T Consensus 458 eellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 458 EELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHH
Confidence 56666777888888887444 45667777777777777776666665555555444444444333333333333333
Q ss_pred HHHHH
Q 001297 839 LLAAR 843 (1105)
Q Consensus 839 l~~~k 843 (1105)
+..++
T Consensus 538 i~RL~ 542 (861)
T PF15254_consen 538 IERLR 542 (861)
T ss_pred HHHHH
Confidence 33333
No 205
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.17 E-value=49 Score=45.84 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCccccC
Q 001297 176 TVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~ 192 (1105)
-++-.|.+|||||.+|-
T Consensus 26 ~~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVLE 42 (1353)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 34556999999999873
No 206
>PRK11281 hypothetical protein; Provisional
Probab=93.13 E-value=43 Score=45.09 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 858 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~ 858 (1105)
+|.....+++.+..+|.+.+..+...+.....-+.|++|..+
T Consensus 293 ~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 293 RLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555577888888888888887777777777778877766
No 207
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.12 E-value=18 Score=42.87 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.++...++.++..+..+...+++++++.+.-+
T Consensus 157 ~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~ 188 (423)
T TIGR01843 157 EAELAGLQAQLQALRQQLEVISEELEARRKLK 188 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444433
No 208
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.11 E-value=43 Score=45.03 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=81.1
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001297 708 IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLS 787 (1105)
Q Consensus 708 ~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~ 787 (1105)
+..++.+-+++.+..-..++..+++++..-.+....+.+ .-....+.+..+..+-+..++++.+...|.
T Consensus 823 E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~-----------~~~e~k~~~~~~~~~l~~~~qle~~~~~l~ 891 (1294)
T KOG0962|consen 823 ELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN-----------LRNELKEEKQKIERSLARLQQLEEDIEELS 891 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345566667777777777777777777766666633222 112223334444555556666666666666
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 788 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
++...+..+...+.. .|...+..+.....+-++++++--+-...+......+.+|...+
T Consensus 892 e~~~~~~s~~~e~~~-------~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 892 EEITRLDSKVKELLE-------RIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred HHHHHHHHHHHhhHh-------hhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555544 67777788888888888888886554444555557788888877
No 209
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.03 E-value=0.11 Score=61.93 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=57.0
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCC---CCCCCchh----HHHHHHHHhhc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQ 213 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~---~~~~GIip----ra~~~LF~~i~ 213 (1105)
.|..-.-|.|.-+|-.- ...||+++-.|.-.-+ -.|.|||||||||-.- -.-|-||- -.+.+||+...
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46667778888888653 4557777777765544 4699999999999641 11122211 12345665554
Q ss_pred c-CCCceEEEEEeeeeeeccee
Q 001297 214 D-TPGREFLLRVSYLEIYNEVI 234 (1105)
Q Consensus 214 ~-~~~~~~~v~vS~lEIYnE~i 234 (1105)
+ -|+..+.-.|||+.-|.-.-
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 3 36667778899999886543
No 210
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.96 E-value=3.3 Score=47.55 Aligned_cols=167 Identities=22% Similarity=0.261 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHH
Q 001297 762 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 841 (1105)
Q Consensus 762 ~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~ 841 (1105)
+.=+...|.+=..|.+.||.-...|.+.+..|+.....+.-++....+.---......+|+.-+...-.+|.+|..|+..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555667888988888999888888887766652211111000000113444555555555666666666555
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 842 ARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEK 921 (1105)
Q Consensus 842 ~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k 921 (1105)
++..+....-.|.. .|..+...+.... +++...+- ..+..+-..+.........||.+++..
T Consensus 91 Lrqkl~E~qGD~Kl----LR~~la~~r~~~~-----------~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 91 LRQKLNEAQGDIKL----LREKLARQRVGDE-----------GIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHhchHHH----HHHHHHhhhhhhc-----------cccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333222211 1111111111111 11111111 345566666777778888888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 922 EFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 922 ~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
-.-.+|+....+..+.+..-|+.||
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888
No 211
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=40 Score=44.13 Aligned_cols=118 Identities=11% Similarity=0.177 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHH
Q 001297 684 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVD 763 (1105)
Q Consensus 684 ~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~ 763 (1105)
+++-+.+++.+++...+...-++++.--+......+|..-+..+.+.+++|.. +..+-...+......-.....+-.+.
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~ 313 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIE 313 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHH
Confidence 56667777788888888777777776655555666666666666666666555 22221111111000111123334455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 764 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
..+.....+.+++++++.++..+.-.+..+..+.+.-..
T Consensus 314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777888888888888877777777776665544
No 212
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.011 Score=66.58 Aligned_cols=42 Identities=29% Similarity=0.826 Sum_probs=32.5
Q ss_pred ccccccccccceE-EeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001297 1058 MCKVCFESPTAAI-LLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1100 (1105)
Q Consensus 1058 ~C~IC~~~~~~~v-l~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 1100 (1105)
.|.||++--+.+| ..-|.|. ||..|.+.. ..||.||+...+.
T Consensus 45 ~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 8999999655444 4579999 999995432 5699999987654
No 213
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=25 Score=41.72 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 782 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
++..-.+.+.+|..+++++-+... -++..-..+.+.+.|.|......++.+|-.+++
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~-----rk~ytqrikEi~gniRKq~~DI~Kil~etreLq 416 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQ-----RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQ 416 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333334555566666666655222 122233445555566666666666555544444
No 214
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.86 E-value=33 Score=42.96 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 788 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
+.+..+..+.+.|-+--..-.+-.......++.+.+.++++..+|.+|..|++..+.+
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444333333333333444566667888889999999999999998766643
No 215
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.79 E-value=3.5 Score=46.03 Aligned_cols=142 Identities=22% Similarity=0.259 Sum_probs=78.0
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001297 769 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 848 (1105)
Q Consensus 769 l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~ 848 (1105)
+..+..++..+..++.-+..+...|..+.+.+..+. +++-++++++.....+|..++...++.+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~--------------~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKI--------------DELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888777733 333334444444444444444444444444
Q ss_pred HHHhh------hhhhcchhhhhhhhhhh-cc-cccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001297 849 RGAAM------QTVNGVNRKYSDGMKAG-RK-GRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAE 920 (1105)
Q Consensus 849 ~e~qi------q~v~~~ar~ylq~l~~~-r~-E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~ 920 (1105)
+..-+ ..+|+.+-+|+..|-.. -- |-+.+. .....-.+....-...+|.+.....+.+.+|+.++..
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRv-----tAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~ 173 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRV-----TAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLET 173 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 45667667787763221 11 111110 0001111222334556677777777777777777666
Q ss_pred HHHhHHHHH
Q 001297 921 KEFLEDEYR 929 (1105)
Q Consensus 921 k~~~eeEL~ 929 (1105)
..-...||.
T Consensus 174 l~al~~e~e 182 (265)
T COG3883 174 LVALQNELE 182 (265)
T ss_pred HHHHHHHHH
Confidence 555555554
No 216
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.76 E-value=0.072 Score=59.70 Aligned_cols=46 Identities=17% Similarity=0.447 Sum_probs=37.0
Q ss_pred Ccccccccccccc----cceEEeCCCCcccchhhhhcCC---CCCCCcccccce
Q 001297 1054 PNSHMCKVCFESP----TAAILLPCRHFCLCKSCSLACS---ECPICRTKISDR 1100 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~----~~~vl~PCgH~~~C~~C~~~~~---~CPiCR~~i~~~ 1100 (1105)
.....|+|+.... .-++|.||||+ ||..|...+. .||+|..+|...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 3556899998644 57888999998 9999977665 699999998754
No 217
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.68 E-value=22 Score=40.45 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHh
Q 001297 761 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 828 (1105)
Q Consensus 761 ~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL 828 (1105)
.+.++.+.+..-+.+...|..++..|.++-.....++-++..++.--.+.|.-+-.+.-.+++.+..+
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455555555555555555566666555555555555555544444444443333333333333333
No 218
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.62 E-value=43 Score=43.67 Aligned_cols=154 Identities=13% Similarity=0.174 Sum_probs=95.0
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc------------CCCCCCCCCCCcHHHHHHHH
Q 001297 699 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG------------DKSAGSSGQGTSDEYVDELR 766 (1105)
Q Consensus 699 l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e------------~~~~~~~~~~~~ee~~~el~ 766 (1105)
|..+.-+|..+..+...|++-+...+.-+..|+.+++.++..+----| ....-... ......+.+.+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y-~~~~~ey~~~k 254 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEY-KKHDREYNAYK 254 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HhhhHHHHHHH
Confidence 445555666677777888888888877777777777777766621111 11111110 11122233333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
+....=++++.++..++.-+..-...|+.+...+..+-+.....++.+......+.+.+...++.-..+..+++.+|...
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456677777777777777777777777777777777777777777666666666666666666666777766666
Q ss_pred HHHHHhh
Q 001297 847 HSRGAAM 853 (1105)
Q Consensus 847 ~~~e~qi 853 (1105)
.+..+.|
T Consensus 335 ~~rq~~i 341 (1072)
T KOG0979|consen 335 EKRQKRI 341 (1072)
T ss_pred HHHHHHH
Confidence 6665555
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.60 E-value=4.8 Score=51.46 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSE 788 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~E 788 (1105)
|.+.++++|......+.++..+++..+.++. +-+ +.......-.+..+..+++.|.++-++|+.+..+++.+..
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~--~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQK--SPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--cccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777777777666653 111 1111222345667788888999999999999888877654
No 220
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=21 Score=40.02 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=17.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.++..-+--++..+.++..|.+....+..+++.|.-
T Consensus 141 ~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~a 176 (265)
T COG3883 141 VIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVA 176 (265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555554433
No 221
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.50 E-value=0.036 Score=70.86 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001297 824 EVTKLSLQNAKLEKELLAARESMHSRGAAMQ 854 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq 854 (1105)
++..++.++.+|+. .+..|.+-++
T Consensus 306 el~~lq~e~~~Le~-------el~sW~sl~~ 329 (722)
T PF05557_consen 306 ELAELQLENEKLED-------ELNSWESLLQ 329 (722)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 44444444444444 4557776443
No 222
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.50 E-value=23 Score=40.28 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHh---hhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ---NKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~---~a~~e~~~l~~kl~~lk~~l 741 (1105)
++-.+|..|++.-+++.-.+.....+.+.+.+..+ -.--.+..++++|.+|.-.+
T Consensus 66 eineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 66 EINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Confidence 55666777777777776666666666666666655 44556667777777776655
No 223
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.47 E-value=52 Score=44.32 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 717 QEQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 717 qeqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
-+++..++..+.++++++..+.+.+...++
T Consensus 877 l~~~~qle~~~~~l~e~~~~~~s~~~e~~~ 906 (1294)
T KOG0962|consen 877 LARLQQLEEDIEELSEEITRLDSKVKELLE 906 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 345566777788888888888888755444
No 224
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=31 Score=44.16 Aligned_cols=166 Identities=19% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Q 001297 709 KSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQE---TENEKLKLEHVQ 785 (1105)
Q Consensus 709 k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~---~E~e~lk~e~~~ 785 (1105)
..++-+.|..|+++++....+.+.+++....-+-=. .+..++..-+....|.++++..++.. .+...|.++..+
T Consensus 569 leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~---~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~a 645 (984)
T COG4717 569 LEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLS---RELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAA 645 (984)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCC---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888888888888877776665100 01112222233344444443222221 133344444444
Q ss_pred HHhhhhhH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH-HhhHHHHHHHHHHH-----------
Q 001297 786 LSEENSGL-------------HVQNQKLAEEASYAKELASAAAVELKNLAGEVT-KLSLQNAKLEKELL----------- 840 (1105)
Q Consensus 786 L~Ee~~~L-------------~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~-kL~~~N~qL~~El~----------- 840 (1105)
-.+-..+| ....+++.-....+++-+.-+...++...+|.+ .|.++...-+.|+.
T Consensus 646 f~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~e 725 (984)
T COG4717 646 FEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTE 725 (984)
T ss_pred HHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcH
Confidence 44444433 234456666666667777777777777777777 66555544444422
Q ss_pred -HHHHHHHHHHHhhhhhhc--chhhhhhhhhhhccccccc
Q 001297 841 -AARESMHSRGAAMQTVNG--VNRKYSDGMKAGRKGRLSG 877 (1105)
Q Consensus 841 -~~k~~~~~~e~qiq~v~~--~ar~ylq~l~~~r~E~l~~ 877 (1105)
+-.+...+|..--||-|- +...|+++...+..|....
T Consensus 726 d~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~ 765 (984)
T COG4717 726 DAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSAS 765 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhh
Confidence 333333344333367666 5667777665566555554
No 225
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.42 E-value=37 Score=42.54 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
+..+..+..+.+....|...+++- ..-.+........+-+.+.++..+|..|..|++..+.+
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE-------~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILERE-------VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444444444443 33344445556667778888899999999998888877
No 226
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=8.4 Score=47.26 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.5
Q ss_pred HHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhh------HHHHHH---------HHhHHHHHHHHhhhhhHHHHHHHHH
Q 001297 670 QRIIENGEASMANASMVDMQQTVTRLMSQCNEKA------FELEIK---------SADNRILQEQLQNKCSENKKLQEKV 734 (1105)
Q Consensus 670 qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~------~el~~k---------~ae~~~lqeqL~~a~~e~~~l~~kl 734 (1105)
..|.+.+...--.+|++.+...+.++-++++-.. +-.++| ..++..-++-|++|---|..+..++
T Consensus 282 e~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl 361 (652)
T COG2433 282 EFISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKL 361 (652)
T ss_pred HHHHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3455555554445577777888888888876432 222333 2367778889999999999999999
Q ss_pred HHHHHHH
Q 001297 735 NLLEQQL 741 (1105)
Q Consensus 735 ~~lk~~l 741 (1105)
...++.+
T Consensus 362 ~~vEr~~ 368 (652)
T COG2433 362 EKVERKL 368 (652)
T ss_pred HHHHHhc
Confidence 9999888
No 227
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.21 E-value=39 Score=42.34 Aligned_cols=200 Identities=19% Similarity=0.160 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHH
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 689 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~ 689 (1105)
|.|+.|..-.|...-++......+ +|+......+++++.-.++..++.....++.+.+....... +++
T Consensus 69 ~~l~~Lqns~kr~el~~~k~~~i~-------~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n-----~~q 136 (716)
T KOG4593|consen 69 DELMQLQNSHKRAELELTKAQSIL-------ARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRN-----QCQ 136 (716)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 444445444444333333333333 34444445667777777776666666666666544432222 223
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 769 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l 769 (1105)
....+...-++ +++.+.|+...+.+++ +....+++.+++..+..+ . .+.--++.....+
T Consensus 137 ~~~~k~~el~~----e~~~k~ae~~~lr~k~---dss~s~~q~e~~~~~~~~------~--------~~~s~l~~~eke~ 195 (716)
T KOG4593|consen 137 ANLKKELELLR----EKEDKLAELGTLRNKL---DSSLSELQWEVMLQEMRA------K--------RLHSELQNEEKEL 195 (716)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHH
Confidence 32322222222 2334455555555544 455566788888887777 1 1122233444444
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH---HHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAV---ELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~---qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.-|..+++..-+....+.++-..+...++...+ ..++..++..... ..++.+.+..+|+..+.++.+|+...+
T Consensus 196 ~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~-~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~r 271 (716)
T KOG4593|consen 196 DRQHKQLQEENQKIQELQASLEERADHEQQNAE-LEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLR 271 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443 3333333322222 223444444555555555555554333
No 228
>PRK06893 DNA replication initiation factor; Validated
Probab=92.11 E-value=0.14 Score=56.06 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=33.6
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 139 ~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
...++||..++.. +..-+ ..+...+-.++|..++-||++|+||||-+.+
T Consensus 10 ~~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4568999998644 32222 2223333457888899999999999998863
No 229
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.01 E-value=0.034 Score=67.83 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=35.1
Q ss_pred cccccccccccceEE---eCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001297 1057 HMCKVCFESPTAAIL---LPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1103 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl---~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~i 1103 (1105)
..|.+|+....+-.+ .+|+|. ||..|.... ..||+||..|..+++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 379999876555443 599999 999995432 5699999999987653
No 230
>PRK06620 hypothetical protein; Validated
Probab=91.93 E-value=0.11 Score=56.52 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC---eEEEEeccCCCCCccccC
Q 001297 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN---GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 138 ~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n---~tIfaYGqTGSGKTyTm~ 192 (1105)
....|+||..+. ...+...|..+. .+.+. -|+| -.+|-||++|+||||.+.
T Consensus 9 ~~~~~tfd~Fvv-g~~N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 9 TSSKYHPDEFIV-SSSNDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCchhhEe-cccHHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345699998775 344566776333 23321 1444 459999999999999986
No 231
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.90 E-value=44 Score=42.22 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=56.5
Q ss_pred hHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CcchhHHHHHHHHHHHHhhhhhhHHH
Q 001297 629 SSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASM--ANASMVDMQQTVTRLMSQCNEKAFEL 706 (1105)
Q Consensus 629 ~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~--~~~~~~e~~q~~~~L~~~l~e~~~el 706 (1105)
+....+++.|++. ..+++|..+|.+.+.++..|.+.+.....-.. ...+. -|-+++..|.-.++
T Consensus 48 ~~~~y~~kve~a~-------~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~-tLke~l~~l~~~le------ 113 (660)
T KOG4302|consen 48 CLEIYKRKVEEAS-------ESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG-TLKEQLESLKPYLE------ 113 (660)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc-cHHHHHHHHHHHHH------
Confidence 3444557777773 45778999999999999999998843322111 00011 35556666665555
Q ss_pred HHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 707 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 707 ~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|..|.++.-.+.-++..++..+-..+
T Consensus 114 --------~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 114 --------GLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666
No 232
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.83 E-value=5.8 Score=43.33 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 900 LKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 900 ~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
...-+.-..++.+=||+|+-+|+.+-++.++ ++-.-..|.+||
T Consensus 138 feqrLnqAIErnAfLESELdEke~llesvqR----LkdEardlrqel 180 (333)
T KOG1853|consen 138 FEQRLNQAIERNAFLESELDEKEVLLESVQR----LKDEARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3333444556677777777777666665533 222234455555
No 233
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.047 Score=63.79 Aligned_cols=41 Identities=29% Similarity=0.855 Sum_probs=31.3
Q ss_pred cccccccc-----------------cccceEEeCCCCcccchhhhhc-C---C-CCCCCccccc
Q 001297 1057 HMCKVCFE-----------------SPTAAILLPCRHFCLCKSCSLA-C---S-ECPICRTKIS 1098 (1105)
Q Consensus 1057 ~~C~IC~~-----------------~~~~~vl~PCgH~~~C~~C~~~-~---~-~CPiCR~~i~ 1098 (1105)
..|+||+. ..++.|+.||-|. |-..|-.. | + .||+||.++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 36999997 2345778899998 99999432 2 2 6999999875
No 234
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.78 E-value=16 Score=44.11 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhccC-CCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDG----SKVQIQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~-~~~~----~~~Q~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.+.|.+|++.+..++......|..|-++..- +|.+ ...++..|+.++...+.+...+..+..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999999999999999999998887654 2332 123566777777777777666666664
No 235
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.78 E-value=44 Score=41.99 Aligned_cols=186 Identities=23% Similarity=0.250 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 728 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~ 728 (1105)
+|.-.+.+.+...+.++..|+..+. ..+++-+-|...|+++..++++...-.+.|+..|.-+-..+.
T Consensus 324 aQeleh~~~~~qL~~qVAsLQeev~-------------sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~ 390 (739)
T PF07111_consen 324 AQELEHRDSVKQLRGQVASLQEEVA-------------SQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARR 390 (739)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333455556666666667776665 345666778888899999999988888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCC----CCCcHHHHHHHH--------------------------HHHHh-h----H
Q 001297 729 KLQEKVNLLEQQLACQNGDKSAGSSG----QGTSDEYVDELR--------------------------KKVQS-Q----E 773 (1105)
Q Consensus 729 ~l~~kl~~lk~~l~~~~e~~~~~~~~----~~~~ee~~~el~--------------------------~~l~~-q----~ 773 (1105)
.++.+......++.-..+.-.....+ ....+..+..+. +.+.. + -
T Consensus 391 ~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~p 470 (739)
T PF07111_consen 391 RLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSP 470 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCC
Confidence 88888888877764333310000000 001111111100 01110 0 1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
-..+++..|...|-+|-.+|..+++.-+. -+.++ .. .+ -+..-.++.+|.....+|+.++...+++++..+.|+
T Consensus 471 p~~~dL~~ELqqLReERdRl~aeLqlSa~-liqqe-V~-~A---rEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL 544 (739)
T PF07111_consen 471 PSVTDLSLELQQLREERDRLDAELQLSAR-LIQQE-VG-RA---REQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL 544 (739)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhHH-HHHHH-HH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13456677777788888888877773332 11111 11 11 123344677777788888888888888887776665
No 236
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.59 E-value=0.27 Score=59.05 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
...+..++..-+|-|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456778889999999999999999999974
No 237
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.47 E-value=6 Score=48.44 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=80.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSK----VQIQNLEREIQEKRRQMRILEQRIIENGEASMANAS 684 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~----~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~ 684 (1105)
..++..+.++...+..+.+...+.++.|..+-...|.... ...+.|.+++.+.+.++..+..+.. ..+| .
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~----~~hP--~ 276 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYT----DKHP--D 276 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhc----ccCh--H
Confidence 3567777888888888877777777766654332221111 1245788889999999998888774 3344 5
Q ss_pred hHHHHHHHHHHHHhhhhhhHH-----HHH--HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 685 MVDMQQTVTRLMSQCNEKAFE-----LEI--KSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 685 ~~e~~q~~~~L~~~l~e~~~e-----l~~--k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.++..++..|+.++.+..-. ... ..--...+..+|.+.+.++..++.+++.+++++
T Consensus 277 v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~ 340 (498)
T TIGR03007 277 VIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARI 340 (498)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888776543110 000 000123466677777777777777777777776
No 238
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.43 E-value=21 Score=37.60 Aligned_cols=162 Identities=18% Similarity=0.172 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhH
Q 001297 611 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND----PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 686 (1105)
Q Consensus 611 ~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~----~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~ 686 (1105)
+++.+|-..--+.--++.....|+..-+.++.. -...++..+.|..+|.+++.++-.|-.++..... -.+
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~------~L~ 80 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQ------ILT 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 344444444444444444444443333322211 2233456779999999999999999888753221 122
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 766 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~ 766 (1105)
-+...+.-+...+....-+|.........++++|..+..+...+++.+..++.+. .- . ..+.+-.+|....
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~------~~--~-~~P~ll~Dy~~~~ 151 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG------GL--L-GVPALLRDYDKTK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CC--C-CCcHHHHHHHHHH
Confidence 2233344444444444444455555666666666666666666666666666665 11 1 1233333455544
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLS 787 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~ 787 (1105)
+.+..-..++..+++.+..+.
T Consensus 152 ~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 152 EEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344434444444444444433
No 239
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.39 E-value=23 Score=38.07 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HHHHHHHHHHHHHHHHHH
Q 001297 898 DDLKLELQARKQREAALEAALAEKE-FLEDEY---RKKVEESKRREEALENDL 946 (1105)
Q Consensus 898 ~~~k~e~~a~~er~~aLE~el~~k~-~~eeEL---~~k~ee~kk~~~~L~~EL 946 (1105)
..+...+.+...++..|+..+.-.. ....+| .++..++......|..|+
T Consensus 128 ~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei 180 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEI 180 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665543332 122233 266667777777777777
No 240
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.36 E-value=0.071 Score=66.92 Aligned_cols=41 Identities=27% Similarity=0.860 Sum_probs=34.4
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC------CCCCCCcccccc
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~------~~CPiCR~~i~~ 1099 (1105)
..|.+|.+ ...+++++|+|. +|..|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 47999999 999999999999 999995433 469999987643
No 241
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.09 E-value=2 Score=38.65 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 854 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq 854 (1105)
.+++|+..+..+.+-+.-|+.+++.|-+ +.+.|..+|..|..|....+.....|...|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke---------------------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKE---------------------KNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666 5555556666666666666666777766554
Q ss_pred h
Q 001297 855 T 855 (1105)
Q Consensus 855 ~ 855 (1105)
.
T Consensus 64 ~ 64 (72)
T PF06005_consen 64 S 64 (72)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.06 E-value=2.1 Score=38.20 Aligned_cols=65 Identities=26% Similarity=0.256 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 723 KCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 723 a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.++++..|+..+|.+-+++ +.++.+++.|..|......+...+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~-----------------------------------~~~~~~~k~L~~ERd~~~~~l~~a~~ 47 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKN-----------------------------------SVHEIENKRLRRERDSAERQLGDAYE 47 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776 55556666666666666666666666
Q ss_pred HHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 803 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 803 e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
++.+|..++..|+.|+...+
T Consensus 48 ---------------------e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 48 ---------------------ENNKLKEENEALRKELEELR 67 (69)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhh
Confidence 78888888888877766544
No 243
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.89 E-value=0.069 Score=69.35 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
++++.-..+..|+....+|..|++
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 244
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.85 E-value=1.6 Score=46.82 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+....++.-.-|+..+..+...+.+...+|+.+|..|.+
T Consensus 140 ~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 140 KEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444456666666777777777777777777665
No 245
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.84 E-value=36 Score=42.62 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..|..|.+....+.|..+.|++...=...-.+++.+.+.+.+..+.+||.+|.||
T Consensus 345 R~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQL 399 (1480)
T COG3096 345 RQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQL 399 (1480)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999998887777778889999999999999999999999
No 246
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.67 E-value=38 Score=39.17 Aligned_cols=134 Identities=12% Similarity=0.180 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 767 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~ 767 (1105)
+-++-..|..-++...=+|+.. +..+...+..++.++.-+..++........ ...+....++.
T Consensus 133 ~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~--------------~e~~k~~~~~~ 195 (309)
T PF09728_consen 133 LREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEVQLAEAKLEQQQEEAE--------------QEKEKAKQEKE 195 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHH
Confidence 3444444555555554444433 334444555555555555555544444431 01111222222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 768 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.+..+..++..+...-..|..+..--..+.+.+-+--....++|..++.+++.+++.+.+|+.+|..+..-
T Consensus 196 ~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 196 ILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222224455555444555444444444455555556788999999999999999999999999888765
No 247
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.64 E-value=36 Score=38.96 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 897 PDDLKLELQARKQREAALEAALAEKE 922 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~ 922 (1105)
+..++.++.-.++...+.+++-.++.
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~~~k~ 256 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEHSEKM 256 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555555555555544
No 248
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.43 E-value=21 Score=35.87 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=8.9
Q ss_pred HHHHhhHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El 839 (1105)
++..|..+|.-|-..|
T Consensus 113 r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 113 RIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556665554443
No 249
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.41 E-value=23 Score=36.25 Aligned_cols=113 Identities=19% Similarity=0.328 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHH---hHHHHHHHHhhhhh
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSA---DNRILQEQLQNKCS 725 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~a---e~~~lqeqL~~a~~ 725 (1105)
.++..|..+...++.+|..|..|+. .+..+|.++..+|.+..-.++...- .+..|+.+
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~-------------~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr------ 81 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQ-------------QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR------ 81 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh------
Confidence 5677788888888888888888886 3455555555555544433333311 22233333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 726 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+..|+.+|+.+...| .+....+..=....+.+++....|..+...+..+++.+..
T Consensus 82 -iq~LEeele~ae~~L---------------------~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 82 -IQLLEEELEEAEKKL---------------------KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred -HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333333333 2222222222233466677777777777777777666655
No 250
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.12 Score=59.61 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=36.1
Q ss_pred cccccccccccccceE-----E---eCCCCcccchhhhh--c---------CCCCCCCcccccceee
Q 001297 1055 NSHMCKVCFESPTAAI-----L---LPCRHFCLCKSCSL--A---------CSECPICRTKISDRLF 1102 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~v-----l---~PCgH~~~C~~C~~--~---------~~~CPiCR~~i~~~i~ 1102 (1105)
....|.||++.-...+ | -+|-|. ||-.|.. + .+.||+||.+...+++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 3458999999776666 4 679999 9999942 2 2569999998877654
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.34 E-value=64 Score=41.86 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki 672 (1105)
=|..++.+.+.+++..+.++
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 252
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.23 E-value=2.2 Score=42.30 Aligned_cols=22 Identities=9% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki 672 (1105)
+.+|+..||-++.++..+..++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 253
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.05 E-value=80 Score=41.97 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=13.2
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
++..+-+|+||||||.-|
T Consensus 25 ~gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 25 SGIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345567899999997543
No 254
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.04 E-value=3.1 Score=47.97 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++..+.++|.+.+.+..++.+++..++.+.
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554444444
No 255
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.97 E-value=3.8 Score=45.41 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cchhHHHHHHHHHHHHhhh-------hhhHHHHHHHHhHHHHHHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGEASMA-NASMVDMQQTVTRLMSQCN-------EKAFELEIKSADNRILQEQL 720 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~-~~~~~e~~q~~~~L~~~l~-------e~~~el~~k~ae~~~lqeqL 720 (1105)
.|.++|+.+-.-+.=+|+.|+.-+.++...... ....+.|.-+...|...++ ...-+|-+|.....-|.-||
T Consensus 25 ~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 25 QQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 566777777777777777777666444321110 1112223333333333333 33445556666777777788
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcc-----CCCCC-CCCC-------------CCcHHHHHHHHHHHHhhHHHHHHHHH
Q 001297 721 QNKCSENKKLQEKVNLLEQQLACQNG-----DKSAG-SSGQ-------------GTSDEYVDELRKKVQSQETENEKLKL 781 (1105)
Q Consensus 721 ~~a~~e~~~l~~kl~~lk~~l~~~~e-----~~~~~-~~~~-------------~~~ee~~~el~~~l~~q~~E~e~lk~ 781 (1105)
+.+.-.+..|+.+|.++|..|- +.. +.... ..+. .-....+.+|+.+..+..+|..+|+.
T Consensus 105 ~s~Kkqie~Leqelkr~KsELE-rsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~ 183 (307)
T PF10481_consen 105 NSCKKQIEKLEQELKRCKSELE-RSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEA 183 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888888888887772 111 11000 0000 12346677888777777777777777
Q ss_pred HHHHHH
Q 001297 782 EHVQLS 787 (1105)
Q Consensus 782 e~~~L~ 787 (1105)
|++.|.
T Consensus 184 e~k~lq 189 (307)
T PF10481_consen 184 EVKALQ 189 (307)
T ss_pred HHHHHh
Confidence 777665
No 256
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=0.11 Score=59.84 Aligned_cols=28 Identities=43% Similarity=0.993 Sum_probs=24.0
Q ss_pred cccccccccccc---eEEeCCCCcccchhhhh
Q 001297 1057 HMCKVCFESPTA---AILLPCRHFCLCKSCSL 1085 (1105)
Q Consensus 1057 ~~C~IC~~~~~~---~vl~PCgH~~~C~~C~~ 1085 (1105)
..|.||++.... .+++||+|+ ||..|.+
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~k 215 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHV-FCKSCLK 215 (445)
T ss_pred ccceeeehhhcCcceeeecccchH-HHHHHHH
Confidence 479999997654 889999999 9999954
No 257
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.76 E-value=0.2 Score=56.36 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 162 ~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+|..+.+--+|.|+..|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4678888999999999999999999999984
No 258
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.72 E-value=26 Score=35.79 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 656 REIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVN 735 (1105)
Q Consensus 656 ~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~ 735 (1105)
.+++..+++-+.|..+|. -|..++......+....++.+-..++...|++++...+.+...|+.+|+
T Consensus 10 ~kLK~~~~e~dsle~~v~-------------~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVE-------------SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHHhHhhHHHHHH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666654 2233333333344444444455555666677777777777777777776
Q ss_pred HHHHHH
Q 001297 736 LLEQQL 741 (1105)
Q Consensus 736 ~lk~~l 741 (1105)
.+++.-
T Consensus 77 ~l~sEk 82 (140)
T PF10473_consen 77 TLRSEK 82 (140)
T ss_pred HHHHHH
Confidence 666654
No 259
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.67 E-value=66 Score=40.50 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHhh---HHHHHHhh-hhccCCCCC---------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 611 QMDLLVEQVKMLAGEIAFS---SSNLKRLV-DQSVNDPDG---------SKVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 611 ~~d~l~eq~k~l~~e~a~~---~~~lk~l~-e~~~~~~~~---------~~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
+.|.|++|+..-.+++.-. ...|+++. |+...++.+ +..-++.|..+-......++.|.-||
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999988888887 44556666 555332221 01124455555555556666666666
No 260
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=89.66 E-value=0.21 Score=46.08 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=23.8
Q ss_pred ceEEeCCCCcccchhhhh-------cCCCCCCCccccc
Q 001297 1068 AAILLPCRHFCLCKSCSL-------ACSECPICRTKIS 1098 (1105)
Q Consensus 1068 ~~vl~PCgH~~~C~~C~~-------~~~~CPiCR~~i~ 1098 (1105)
.+|++.|+|. |-..|.. .-..||+||+++.
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5688999998 9999932 2356999999864
No 261
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.66 E-value=0.16 Score=57.76 Aligned_cols=40 Identities=38% Similarity=0.988 Sum_probs=32.7
Q ss_pred ccccccccccceEEeCC--CCcccchhhh-hcCCCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPC--RHFCLCKSCS-LACSECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PC--gH~~~C~~C~-~~~~~CPiCR~~i~~ 1099 (1105)
.|+||++.-.--++ -| ||+ .|..|. .....||.||.+|+.
T Consensus 50 eCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 50 DCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred cCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 79999887666665 46 799 999998 555779999999984
No 262
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.55 E-value=35 Score=37.13 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
.........++++...+......+..+-..... .+..+||..+..+..++-.++..+..+...+......++..+...
T Consensus 47 a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~--~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 47 ARVMANQKRLERKLDEAEEEAEKWEKQAELALA--AGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555544443 345566666666666666666666555555555555555444444
Q ss_pred HHhh
Q 001297 850 GAAM 853 (1105)
Q Consensus 850 e~qi 853 (1105)
+..|
T Consensus 125 ~~kl 128 (221)
T PF04012_consen 125 EAKL 128 (221)
T ss_pred HHHH
Confidence 4444
No 263
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.48 E-value=27 Score=35.66 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=14.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 718 EQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 718 eqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.|.....+..-|+.+|..|++.+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreL 33 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLEREL 33 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHH
Confidence 445555556666666666666665
No 264
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.44 E-value=21 Score=40.81 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHH-HHH---HHHHHH-hHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 764 ELRKKVQSQETENEKLKLEHVQLSEENSGLHV-QNQ---KLAEEA-SYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~-e~~---kL~~e~-~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
+....+.+..+.|-+|+....-|.-|...|.. +.. .+-... ....++.++.-.++|.++..+...+
T Consensus 191 eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkkivf~~enie 261 (401)
T PF06785_consen 191 EQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKKIVFKVENIE 261 (401)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHHHHHHhhHH
Confidence 33445666666777777777666666555421 111 111111 2556677777788888887666543
No 265
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.44 E-value=28 Score=37.14 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRIIENGE---ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~~s~~---~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
+++|+.++..-+..+..|++++..... .++......+.+..+..+...|+|.-..-+..+.-|..|.+||..+...+
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999954311 11101112233445555666666655555566667888999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQL 741 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l 741 (1105)
..|...|..+..+.
T Consensus 98 ~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 98 EALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888887
No 266
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.14 E-value=1.8 Score=46.68 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAA 852 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~q 852 (1105)
|+-.++++.++..|.|+|..|..+|+.|-. .-..|.++|..|..+|+..+..+.....|
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~---------------------~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRA---------------------INESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 444578889999999999999999999988 55567788888888888888777777766
Q ss_pred hh
Q 001297 853 MQ 854 (1105)
Q Consensus 853 iq 854 (1105)
+|
T Consensus 148 ~~ 149 (292)
T KOG4005|consen 148 QQ 149 (292)
T ss_pred HH
Confidence 63
No 267
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.97 E-value=19 Score=43.24 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 729 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~ 729 (1105)
+.+.|..++++-+++...|-++.......+--. ...-+|.+.-+.. +|+-.++..+.+++.|+.+..++..
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~--~~keq~~y~~~~K-------elrdtN~q~~s~~eel~~kt~el~~ 230 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETLTY--EEKEQQLYGDCVK-------ELRDTNTQARSGQEELQSKTKELSR 230 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999885443322110 0011233333333 3444567778888888888888888
Q ss_pred HHHHHHHHHHHH
Q 001297 730 LQEKVNLLEQQL 741 (1105)
Q Consensus 730 l~~kl~~lk~~l 741 (1105)
+++++-.|-.++
T Consensus 231 q~Ee~skLlsql 242 (596)
T KOG4360|consen 231 QQEENSKLLSQL 242 (596)
T ss_pred HHHHHHHHHHHH
Confidence 888888888887
No 268
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.90 E-value=50 Score=42.78 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhccC-CCCCc---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDGS---KVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~-~~~~~---~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
.+.|.+|+..+..++......|..|-....- ++++. ..|+..|+.++...+.+....+.+.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~ 260 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTA 260 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777766666666554322 12111 1234455555555444444444433
No 269
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.84 E-value=45 Score=41.77 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
+.+.++.+|.+...+..+++++++.++.++.+
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44456666777777777777888888877733
No 270
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.54 E-value=45 Score=42.90 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=18.2
Q ss_pred CCCEEEEEEeCCCChhhhccCC-----eEEEeecC
Q 001297 99 GDSISVTIRFRPLSEREFQRGD-----EIAWYADG 128 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~-----~~~~~~~~ 128 (1105)
+|...+.||.-|+...=...+. .+.|++.+
T Consensus 124 ~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 124 DGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred CCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 4556778888887655443332 36687653
No 271
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=88.46 E-value=62 Score=38.59 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=40.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 687 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e 687 (1105)
..+.+..+.++++++..++......+.+|-++- +...+-+...+.+-+-..+.||-.|- |..|
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~-------~~e~~~~~~~LqEEr~R~erLEeqlN----------d~~e 272 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQY-------QREYQFILEALQEERYRYERLEEQLN----------DLTE 272 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHH
Confidence 334556666666666665555555554333322 12233455555555566666666664 2223
Q ss_pred -HHHHHHHHHHhhh
Q 001297 688 -MQQTVTRLMSQCN 700 (1105)
Q Consensus 688 -~~q~~~~L~~~l~ 700 (1105)
++-+|..|+.+|.
T Consensus 273 lHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 273 LHQNEIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 3447777777764
No 272
>PRK12377 putative replication protein; Provisional
Probab=88.45 E-value=0.37 Score=53.61 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
..+||........+..++. .+..++..+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3578876555556666665 5666777776654 4688899999999999864
No 273
>PRK05642 DNA replication initiation factor; Validated
Probab=88.41 E-value=0.41 Score=52.71 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhc---CC-CeEEEEeccCCCCCccccC
Q 001297 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAME---GV-NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 138 ~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~---G~-n~tIfaYGqTGSGKTyTm~ 192 (1105)
-...|+||..+.. . +..+ ...+....+ ++ ...++-||.+|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~-~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPG-A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcC-C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3446899998733 2 3333 333433332 22 2468999999999999875
No 274
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.35 E-value=33 Score=44.27 Aligned_cols=118 Identities=23% Similarity=0.259 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
++++.++.++..|.........+++.+.. ++...+.....|..+|...+.+....+.|+
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~---------------------qL~E~E~~L~eLq~eL~~~keS~s~~E~ql 654 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKN---------------------QLKESEQKLEELQSELESAKESNSLAETQL 654 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555 455555555556666666666666666655
Q ss_pred hhhhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001297 854 QTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVE 933 (1105)
Q Consensus 854 q~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~e 933 (1105)
+-... ..+.++. .....+.++......+.+||.||...+...+|+..++.
T Consensus 655 ~~~~e------------~~e~le~------------------~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~ 704 (769)
T PF05911_consen 655 KAMKE------------SYESLET------------------RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR 704 (769)
T ss_pred HHHHH------------HHHHHhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 32100 0111111 12345667777778888999998888888888766665
Q ss_pred HHHHHHHHH
Q 001297 934 ESKRREEAL 942 (1105)
Q Consensus 934 e~kk~~~~L 942 (1105)
+++.++...
T Consensus 705 ~Le~el~r~ 713 (769)
T PF05911_consen 705 ELEEELERM 713 (769)
T ss_pred HHHHHHHhh
Confidence 555444443
No 275
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.32 E-value=0.25 Score=61.24 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=34.9
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
..|+||..+... .+.-+|. .+..++...-.+||. ||-||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 459998865333 3445553 445555544456776 89999999999999863
No 276
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.09 E-value=88 Score=39.90 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
...++.++..+...+.++...+..++...-+ .+.+.....+++.+-+++.++..+...+..++...+..+...+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-----~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPS-----EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655555433 1333444444555555555555555555555544444444333
No 277
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.96 E-value=59 Score=37.76 Aligned_cols=174 Identities=18% Similarity=0.160 Sum_probs=105.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCC-CCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND-PDGS-------KVQIQNLEREIQEKRRQMRILEQRIIENGEAS 679 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~-~~~~-------~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s 679 (1105)
....+++..-=.+.|..=+.++...++.+.++...+ |.=. .--+.-+..+++-.+......-++.=-.-+
T Consensus 66 ~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR-- 143 (325)
T PF08317_consen 66 TVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWR-- 143 (325)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445567776667777777777777777776665443 3211 112345666777776666555555410000
Q ss_pred CCcchhHHHHHHHHHHHHhhhhhh----HHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 001297 680 MANASMVDMQQTVTRLMSQCNEKA----FELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ 755 (1105)
Q Consensus 680 ~~~~~~~e~~q~~~~L~~~l~e~~----~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~ 755 (1105)
.+-+..|+..|.++. -.+.........+.+-+.........|.+++..|+....+ ..
T Consensus 144 ---------~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e------~~---- 204 (325)
T PF08317_consen 144 ---------MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE------IE---- 204 (325)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hh----
Confidence 112223333333332 2333445677777888888888888888888888887622 11
Q ss_pred CCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 756 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 756 ~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
..-.+.+..+++.+..+..+++..+++...|..+...+..+.+.+..
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235566777777777788887777777777777777777666665
No 278
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.93 E-value=0.47 Score=52.28 Aligned_cols=50 Identities=10% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 138 ~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
....|+||..+.. .+..++..+. .++. ......++-||++|+||||.+.+
T Consensus 15 ~~~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 15 LPDDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCCcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 3456889876643 5566665322 2221 22234799999999999999863
No 279
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.83 E-value=7.5 Score=35.09 Aligned_cols=33 Identities=39% Similarity=0.484 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYA 807 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~ 807 (1105)
|++.|+.++..|.+++..|..+|++|..+-...
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666666665533333
No 280
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.76 E-value=0.19 Score=58.18 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.7
Q ss_pred HHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 156 EVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
.++. .+...|+.+..+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3443 3556777776555 5699999999999998864
No 281
>PRK08116 hypothetical protein; Validated
Probab=87.57 E-value=0.34 Score=54.52 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=36.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhc--CCCeEEEEeccCCCCCccccCC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME--GVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~--G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
..++||... .+..+...|. .+...++.+.. +.+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357888755 3455555665 56667776654 3455699999999999998863
No 282
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.54 E-value=54 Score=41.06 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=8.8
Q ss_pred EEeccCCCCCcccc
Q 001297 178 FAYGVTSSGKTHTM 191 (1105)
Q Consensus 178 faYGqTGSGKTyTm 191 (1105)
+-+|.||+|||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 44577777776544
No 283
>PRK09087 hypothetical protein; Validated
Probab=87.53 E-value=0.46 Score=52.12 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 137 ~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.....|+||..+.. ..+..+|.. +.....-.+..++-||++||||||-+.
T Consensus 13 ~~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 13 SHDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 34456899998753 334557763 333222235568999999999999986
No 284
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.42 E-value=0.35 Score=58.31 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=33.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||..+. ...+...|.. +..++.. -..||. +|-||++|+||||-|.
T Consensus 100 ~~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCccccccc-CCchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 4699998774 3455666653 3334332 123675 9999999999999985
No 285
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.36 E-value=24 Score=37.42 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=13.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLE 738 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk 738 (1105)
+.+..++++...+..+..+.+++..+.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 286
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.30 E-value=6.7 Score=42.55 Aligned_cols=19 Identities=5% Similarity=-0.083 Sum_probs=7.4
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 001297 825 VTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 825 v~kL~~~N~qL~~El~~~k 843 (1105)
+..+..++..|+.++...+
T Consensus 148 l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 148 LIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333
No 287
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.20 E-value=71 Score=37.83 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 709 KSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 709 k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..++...++.++.....++..++.++..++.++
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554
No 288
>PRK06526 transposase; Provisional
Probab=87.11 E-value=0.3 Score=54.53 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=28.4
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 144 FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
||.-|.+.-+...+........++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 333344555555555443444443 3444 79999999999999874
No 289
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.97 E-value=15 Score=41.08 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 001297 935 SKRREEALENDL 946 (1105)
Q Consensus 935 ~kk~~~~L~~EL 946 (1105)
++.++..|..||
T Consensus 187 lq~QL~~L~~EL 198 (246)
T PF00769_consen 187 LQEQLKELKSEL 198 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344456666666
No 290
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.84 E-value=0.39 Score=58.04 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=32.0
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|+||..+.. .++...|. .+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 5899986643 34555664 44444432111244 48999999999999985
No 291
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=86.65 E-value=52 Score=35.82 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 001297 828 LSLQNAKLEKE 838 (1105)
Q Consensus 828 L~~~N~qL~~E 838 (1105)
+-.+|.+|+.+
T Consensus 161 i~~EN~~L~k~ 171 (206)
T PF14988_consen 161 IKRENQQLRKE 171 (206)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 292
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.64 E-value=13 Score=40.20 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+.+..|+..|.+++..|+.+.+-+.+ ++..|+.+|.+|.+.+...-
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~e---------------------rlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQE---------------------RLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhch
Confidence 55556677777777777777777766 77777778887777654433
No 293
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=87 Score=38.28 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=22.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 768 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+..-++|+|.+.+.++.+.+.+..+..+.-+|-+
T Consensus 122 el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~ 156 (772)
T KOG0999|consen 122 ELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRD 156 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 33344566677777777777777777777766666
No 294
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.62 E-value=72 Score=37.29 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHH
Q 001297 683 ASMVDMQQTVTRLMSQCNEKAFELE 707 (1105)
Q Consensus 683 ~~~~e~~q~~~~L~~~l~e~~~el~ 707 (1105)
.+...|..+|..|.+|++---++++
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e 315 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGE 315 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455677777777777776666654
No 295
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.32 E-value=35 Score=38.45 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=11.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 001297 764 ELRKKVQSQETENEKLKLEHVQLSEENSG 792 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~~L~Ee~~~ 792 (1105)
.++..+..++.+++..+.+...+.+++..
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333333
No 296
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.30 E-value=0.49 Score=56.35 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.4
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||.... +..+...|. ++..+...--..|| .+|-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689988442 345555664 34444443111234 47889999999999985
No 297
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.17 E-value=57 Score=36.79 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001297 726 ENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l 741 (1105)
++..+..+.+.++.++
T Consensus 28 ~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 28 ELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 298
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.17 E-value=7.3 Score=42.27 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHH
Q 001297 728 KKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYA 807 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~ 807 (1105)
..+.++...+++++ ... +..++..+.+++.+.+-++|++....+.+.+.+.+..|..+.+.+.+
T Consensus 130 ~~~~~~~~~lk~~~------~~~-----~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~----- 193 (216)
T KOG1962|consen 130 EKAMKENEALKKQL------ENS-----SKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD----- 193 (216)
T ss_pred HHHHHHHHHHHHhh------hcc-----cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----
Confidence 55666777777777 221 22566666666666666667777777777777777777777766666
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 808 KELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 808 k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
|.++|..++..|+++++
T Consensus 194 ----------------EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 ----------------EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred ----------------HHHHHHHHHHHHHHHHh
Confidence 88888888887777654
No 299
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.11 E-value=60 Score=35.88 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
-++|+-.++++--..|+-|+.||.+++
T Consensus 134 sleDfeqrLnqAIErnAfLESELdEke 160 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDEKE 160 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345555555555556666666665555
No 300
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.93 E-value=0.51 Score=57.05 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.8
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||.... ...+...|. .+..+...--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 4688988443 235555665 34444443222344 48889999999999985
No 301
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.47 E-value=8.1 Score=41.91 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+|++.+.....+.+ ....+++.|+++|..+..++..|+.+++++++..
T Consensus 122 ~l~~~~~~~~~~~~-------~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 122 EMQQKVAQSDSVIN-------GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554433333 2456888889999999999999999999888776
No 302
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.32 E-value=0.7 Score=51.33 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
..+||........|..++. .+..+++.+..|+ ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4678775444445555665 3444555554443 3689999999999999864
No 303
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.09 E-value=16 Score=40.87 Aligned_cols=100 Identities=23% Similarity=0.244 Sum_probs=70.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCC---CCC-------------------CC--------CCcHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSA---GSS-------------------GQ--------GTSDEYVD 763 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~---~~~-------------------~~--------~~~ee~~~ 763 (1105)
+.++++|..++.++.++++=+..|+.+|...-..... .+. .. +.....|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si- 80 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI- 80 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH-
Confidence 4577888888888888888888888888554431000 000 00 0011111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 764 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
-.++ ..|.|++++.+..|.+|..++..++..|.. ||.+|.+.|.+|-+.+.
T Consensus 81 --LpIV---tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~---------------------Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 --LPIV---TSQRDRFRQRNAELEEELRKQQQTISSLRR---------------------EVESLRADNVKLYEKIR 131 (248)
T ss_pred --HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 1222 346799999999999999999999999999 99999999999987643
No 304
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.01 E-value=0.8 Score=49.48 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 136 ~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
++....|+||.... + .+..++..+- .+ +..+....|+-||++|+||||...
T Consensus 6 ~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~---~~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 6 VGLPDDPTFDNFYA-G-GNAELLAALR-QL---AAGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCCchhhcCcCc-C-CcHHHHHHHH-HH---HhcCCCCeEEEECCCCCCHHHHHH
Confidence 33445688888773 2 4444554222 22 235667789999999999999874
No 305
>PF13514 AAA_27: AAA domain
Probab=84.90 E-value=1.7e+02 Score=39.97 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=17.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 718 EQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 718 eqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
+.|..+..+...+...+..+...|...+.
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 646 (1111)
T PF13514_consen 618 EELRAARAELEALRARRAAARAALAAALA 646 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666655554
No 306
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=84.76 E-value=41 Score=39.98 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhc
Q 001297 693 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQN 745 (1105)
Q Consensus 693 ~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~ 745 (1105)
.-+..+++|.-+|++-.++|.+.+|.|......++.+++...-.+.++....+
T Consensus 305 tas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~ 357 (554)
T KOG4677|consen 305 TASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQI 357 (554)
T ss_pred hhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Confidence 34566778888888888999999999999999999999999988888774433
No 307
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=84.58 E-value=0.26 Score=58.15 Aligned_cols=42 Identities=24% Similarity=0.710 Sum_probs=34.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKI 1097 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~---------~~~CPiCR~~i 1097 (1105)
+...|.+|.+...+.+..-|.|. ||.-|... --.||+|-.+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34489999999999999999998 99999521 14599998653
No 308
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.56 E-value=98 Score=39.61 Aligned_cols=74 Identities=27% Similarity=0.281 Sum_probs=43.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 769 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 769 l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
+...+.++..++++...|.++...+..+++....+. ..+...+++..++|.+.. +-+.++++|..++..+|-.+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKES---NTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
Confidence 344445556666666666666666666666655522 233455555555555555 55577788877777666433
No 309
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.25 E-value=0.73 Score=54.64 Aligned_cols=51 Identities=29% Similarity=0.491 Sum_probs=31.9
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 139 ~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
...|+||.... +.++.-.|. ++. -|...-.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~-g~~N~~A~a-a~~-~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVV-GPSNRLAYA-AAK-AVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheee-CCchHHHHH-HHH-HHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 34699998653 445555553 222 2222222234468999999999999996
No 310
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=1.4 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=19.1
Q ss_pred HHHHhcCCC-eEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVN-GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n-~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.- ..++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344444443 34999999999999886
No 311
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.17 E-value=1 Score=49.02 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 136 ~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
......|+||.+++. .. ..++. ..+.++.. .+.+..|+-||.+|+||||-+.
T Consensus 9 ~~~~~~~~~d~f~~~-~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 9 LGPPPPPTFDNFVAG-EN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCChhhhcccccC-Cc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 334456899998832 22 33433 23333331 2345679999999999999874
No 312
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.13 E-value=73 Score=35.24 Aligned_cols=91 Identities=14% Similarity=0.248 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------cccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhh
Q 001297 651 IQNLEREIQEKRRQMRILEQRIIEN------GEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKC 724 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~~s------~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~ 724 (1105)
...|...+.+.-.++..+.+.+... ........+..+|++.+....++|.+..-.|.........++.+...+-
T Consensus 40 ~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq 119 (240)
T PF12795_consen 40 AAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQ 119 (240)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3345555555555555555555333 2234455677899999999999888877777766777777777777888
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001297 725 SENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 725 ~e~~~l~~kl~~lk~~l 741 (1105)
..+.++...++....++
T Consensus 120 ~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 120 QQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888888777
No 313
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=83.96 E-value=1.4e+02 Score=38.28 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 907 RKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 907 ~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
.++++-+||++|+++- -+=+ -.-+++.+++.|+.||
T Consensus 693 ~k~kieal~~qik~~~--~~a~--~~~~lkek~e~l~~e~ 728 (762)
T PLN03229 693 EKEKIEALEQQIKQKI--AEAL--NSSELKEKFEELEAEL 728 (762)
T ss_pred hHHHHHHHHHHHHHHH--HHHh--ccHhHHHHHHHHHHHH
Confidence 3588899998885433 1111 1234455566666666
No 314
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.94 E-value=44 Score=38.42 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001297 758 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQN 797 (1105)
Q Consensus 758 ~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~ 797 (1105)
+++.+.+++.....+..+++.+|.....|..+...|..++
T Consensus 124 ~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 124 LEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555555555555444
No 315
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.93 E-value=1.8e+02 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
+.+.-+|+||||||..+
T Consensus 31 ~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 55667899999999765
No 316
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.89 E-value=6.4 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 001297 778 KLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 778 ~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
.+++|...|.++...|+.+.+.+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l 76 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREEL 76 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 317
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=83.71 E-value=53 Score=34.77 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+..+.-+|+.|+++|--|+++|+-.+.-+
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999988
No 318
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.66 E-value=78 Score=41.81 Aligned_cols=160 Identities=23% Similarity=0.202 Sum_probs=73.5
Q ss_pred HHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCcchhHHHHHHHHHHHHhh
Q 001297 622 LAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA--SMANASMVDMQQTVTRLMSQC 699 (1105)
Q Consensus 622 l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~--s~~~~~~~e~~q~~~~L~~~l 699 (1105)
=+|++.+...+|.|....-+..-.--.=---||.|=|+| .|-.|-...+.+ ||+ ...|...++.|..+-
T Consensus 315 EAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQD------SLGGkTKT~iIATiSPa---~~~lEETlSTLEYA~ 385 (1041)
T KOG0243|consen 315 EAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQD------SLGGKTKTCIIATISPA---KHNLEETLSTLEYAH 385 (1041)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHH------HhCCCceeEEEEEeCCC---cccHHHHHHHHHHHH
Confidence 479999999999985443333211111112355555543 122222222222 333 235666777664433
Q ss_pred hhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHH-------HHHHHHHHhh
Q 001297 700 NEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV-------DELRKKVQSQ 772 (1105)
Q Consensus 700 ~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~-------~el~~~l~~q 772 (1105)
.-|+.. -+-.+- |.=.+..-+-++-.+|++||++|.+.-|- +| .=-+++.+ .+....++++
T Consensus 386 RAKnIk------NKPevN-Qkl~K~~llKd~~~EIerLK~dl~AaReK----nG-vyisee~y~~~e~e~~~~~~~ieel 453 (1041)
T KOG0243|consen 386 RAKNIK------NKPEVN-QKLMKKTLLKDLYEEIERLKRDLAAAREK----NG-VYISEERYTQEEKEKKEMAEQIEEL 453 (1041)
T ss_pred Hhhhcc------CCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHhHhh----Cc-eEechHHHHHHHHHHHHHHHHHHHH
Confidence 322110 001111 22244455667778888888888554441 11 11123333 2333344555
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+.|++.++.....+.|-+.-....++.|.+
T Consensus 454 e~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 454 EEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555555555555433333333333
No 319
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.65 E-value=1 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=19.7
Q ss_pred HHHhc-CCCeEEEEeccCCCCCccccC
Q 001297 167 KAAME-GVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 167 ~~~l~-G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++. +....++-||++|+|||+++.
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 33443 455689999999999999863
No 320
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.44 E-value=34 Score=38.14 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001297 906 ARKQREAALEAALAEKE 922 (1105)
Q Consensus 906 a~~er~~aLE~el~~k~ 922 (1105)
++..|+..|...+..-+
T Consensus 128 eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 128 ERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 56666666666554443
No 321
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.31 E-value=1.4e+02 Score=37.73 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHH
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKR 662 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKe 662 (1105)
+.+..|+++|.-|+...++.|...++...+ -..|.+-|...+.++.
T Consensus 373 ~~~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 373 KKNEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQ 418 (786)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Confidence 455668888888888888888777766543 2345555655555554
No 322
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=83.30 E-value=22 Score=40.15 Aligned_cols=109 Identities=23% Similarity=0.241 Sum_probs=82.5
Q ss_pred HHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001297 707 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQL 786 (1105)
Q Consensus 707 ~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L 786 (1105)
++=.-||++|..--.++-+|++.|-+.|..|++.+ |.+.. ..+ =+..|.+....|
T Consensus 17 EIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai---LagGa--------------aaN--------avrdYqrq~~el 71 (351)
T PF07058_consen 17 EICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI---LAGGA--------------AAN--------AVRDYQRQVQEL 71 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcch--------------HHH--------HHHHHHHHHHHH
Confidence 34466888888888899999999999999998887 11110 111 137899999999
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh----------hHHHHHHhhHHHHHHHHHHHHHH
Q 001297 787 SEENSGLHVQNQKLAEEASYAKELASAAAVELKN----------LAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 787 ~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~----------l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.||+..|.-++-+.-- ++.-.|...+-+||| +.+|-.-|+.+.+||+..|+-..
T Consensus 72 neEkrtLeRELARaKV---~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaE 135 (351)
T PF07058_consen 72 NEEKRTLERELARAKV---SANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAE 135 (351)
T ss_pred HHHHHHHHHHHHHhhh---hhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877544 777788888888887 66777778888888888766544
No 323
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.27 E-value=94 Score=35.79 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001297 811 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 856 (1105)
Q Consensus 811 a~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v 856 (1105)
...+..+-+.|-.+.++++..-..|.+|++.+|+-+...++..|..
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 3345555556666667777777777777888887777777666543
No 324
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.98 E-value=0.54 Score=52.49 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=39.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccceeec
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISDRLFA 1103 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~~i~i 1103 (1105)
...|++|+.+..=+.++||+|-+||..|... .+-||+|-..+...+.|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 3479999999999999999999999988533 35599999888776654
No 325
>PRK08727 hypothetical protein; Validated
Probab=82.87 E-value=1.1 Score=49.43 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC-eEEEEeccCCCCCccccC
Q 001297 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 138 ~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n-~tIfaYGqTGSGKTyTm~ 192 (1105)
....|+||..+.... + .+..+ . .+..|+. -.|+-||++|+||||-+.
T Consensus 12 ~~~~~~f~~f~~~~~-n--~~~~~-~----~~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 12 YPSDQRFDSYIAAPD-G--LLAQL-Q----ALAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCCcCChhhccCCcH-H--HHHHH-H----HHHhccCCCeEEEECCCCCCHHHHHH
Confidence 344688998764333 2 22211 1 2222332 359999999999999885
No 326
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.63 E-value=1.2 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.9
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+....++-||++|+|||+++.
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3455678999999999999863
No 327
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.61 E-value=1.5e+02 Score=37.82 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 782 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
-+....-|..+++.+.+..+-+.-..+-.-.++.-|+..|--.+...+++-.+|++=-..++.+.+..
T Consensus 488 ~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 488 NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544444444455666777777778888888888888777777665544
No 328
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.49 E-value=4.1 Score=39.54 Aligned_cols=44 Identities=32% Similarity=0.414 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+.+.++.+.+..=-.++..+|.....|.|||..|..+|++|-+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666678889999999999999999999999888
No 329
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.23 E-value=1.2e+02 Score=36.19 Aligned_cols=173 Identities=19% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHH
Q 001297 615 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTR 694 (1105)
Q Consensus 615 l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~ 694 (1105)
|-||+|.--+--.+..+.=. +-|.+.|-..-|+|.-+++.+.-|+...-. ++.++-..+++
T Consensus 262 LEEq~reqElraeE~l~Ee~-------------rrhrEil~k~eReasle~Enlqmr~qqlee------entelRs~~ar 322 (502)
T KOG0982|consen 262 LEEQRREQELRAEESLSEEE-------------RRHREILIKKEREASLEKENLQMRDQQLEE------ENTELRSLIAR 322 (502)
T ss_pred HHHHHHhhhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHH
Q 001297 695 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQET 774 (1105)
Q Consensus 695 L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~ 774 (1105)
|++..++..=+..+..-....+..||-.-.-.+..+-..|.+..+.- +...||-
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek------------------eatqELi-------- 376 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK------------------EATQELI-------- 376 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------HHHHHHH--------
Q ss_pred HHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLH--------VQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~--------~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
+++.+++.+|...+-.+. .+..-|-. +|.+|-..|..|.+.-+.....+
T Consensus 377 --eelrkelehlr~~kl~~a~p~rgrsSaRe~eleq---------------------evkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 377 --EELRKELEHLRRRKLVLANPVRGRSSAREIELEQ---------------------EVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred --HHHHHHHHHHHHHHHHhhccccCchhHHHHHHHH---------------------HHHHhccccchhhhhhhhhhhhh
Q ss_pred HHHHHhh--hh
Q 001297 847 HSRGAAM--QT 855 (1105)
Q Consensus 847 ~~~e~qi--q~ 855 (1105)
-..-.|+ .|
T Consensus 434 lTls~q~lkn~ 444 (502)
T KOG0982|consen 434 LTLSTQFLKNW 444 (502)
T ss_pred hhHHHHHHHHH
No 330
>PRK08181 transposase; Validated
Probab=82.21 E-value=1.2 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.8
Q ss_pred cCCCeEEEEeccCCCCCccccCC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999999875
No 331
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.18 E-value=80 Score=34.21 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 779 LKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 779 lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
|++....|.+.......++..+..
T Consensus 148 LEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777776665
No 332
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.03 E-value=20 Score=32.76 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 761 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 761 ~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+..|.+++++=...|.-|+-|+..|-|.|..|..+++.+..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555566666666666666555555555444
No 333
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=81.92 E-value=78 Score=33.94 Aligned_cols=105 Identities=24% Similarity=0.299 Sum_probs=59.5
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHH
Q 001297 699 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEK 778 (1105)
Q Consensus 699 l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~ 778 (1105)
.++-.-.|-+..+|.....++...+++.|.+|...+..+.+-+ .-+.+.-.+-....+.
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl---------------------k~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL---------------------KSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH---------------------HHHHHHHHHHhhhHHH
Confidence 3444445555666777777788888888888887777776666 1222222222233466
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 779 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 779 lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
|+.+++.|++-...-.+.-+ ..-..|.+|+.+-..|+..+...+..
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE---------------------~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAE---------------------FAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHH---------------------HHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 66666666652222222222 22236777777777776666655544
No 334
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.32 E-value=0.82 Score=52.54 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=33.2
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcC-CCeEEEEeccCCCCCccccCC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G-~n~tIfaYGqTGSGKTyTm~G 193 (1105)
.+||.+-........++.. +...++....| ....|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4565543333355666663 45566665543 234699999999999999864
No 335
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.00 E-value=1.3e+02 Score=35.90 Aligned_cols=123 Identities=19% Similarity=0.153 Sum_probs=69.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHH
Q 001297 716 LQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 795 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~ 795 (1105)
--+.|+..-.....|++..+-|+.+.|+ +...+.+.+.+++-.+++.+.....+....+-|.+-.+-+.+
T Consensus 214 ~~k~l~al~llv~tLee~~~~LktqIV~----------sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qt 283 (446)
T KOG4438|consen 214 KNKILNALKLLVVTLEENANCLKTQIVQ----------SPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQT 283 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 3456667777777888877778888722 234456667777766666666666666666666655444432
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhh------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 796 QNQKLAEEASYAKELASAAAVELKNL------AGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 796 e~~kL~~e~~~~k~la~a~~~qlk~l------~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
+-.|-+....++..-.|+++.+ -+++-+|+.++.-...|+...+-. -.|-.|+
T Consensus 284 ----i~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~-e~~~kqL 342 (446)
T KOG4438|consen 284 ----IEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMF-ENLTKQL 342 (446)
T ss_pred ----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 2233333444444444444333 234555666666555566655522 2454444
No 336
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=1.1e+02 Score=37.38 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhc
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQS 640 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~~ 640 (1105)
-.|.|-+..|.++..+..++|.-|-|.+
T Consensus 341 kdLkEkv~~lq~~l~eke~sl~dlkeha 368 (654)
T KOG4809|consen 341 KDLKEKVNALQAELTEKESSLIDLKEHA 368 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666655
No 337
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.94 E-value=45 Score=35.37 Aligned_cols=26 Identities=46% Similarity=0.569 Sum_probs=10.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 716 LQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++++|+....+..++++.+..+...+
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444333333333
No 338
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.78 E-value=54 Score=36.26 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.=|++|+.|...|.+|+.....++.....+-..--..++++..+.....+.+.++..+-..|..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~ 96 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888877777444444455555555554444444443333333333
No 339
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.59 E-value=80 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 709 KSADNRILQEQLQNKCSENKKLQEKVN 735 (1105)
Q Consensus 709 k~ae~~~lqeqL~~a~~e~~~l~~kl~ 735 (1105)
...+|..|.+++.+...+...|+.++.
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~ 73 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIG 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444443
No 340
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.53 E-value=1.1 Score=46.14 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=20.9
Q ss_pred HHHHHHhcC-CCeEEEEeccCCCCCccccCC
Q 001297 164 PVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 164 plV~~~l~G-~n~tIfaYGqTGSGKTyTm~G 193 (1105)
.+++.+-.+ .+..++..|+||||||++|.+
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444443 356677788999999999973
No 341
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.21 E-value=52 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.++.|..++.+|..+-.+++.||+.+.
T Consensus 96 ~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 96 ANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444499999999999998887665
No 342
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=80.14 E-value=0.6 Score=52.09 Aligned_cols=41 Identities=32% Similarity=1.027 Sum_probs=29.5
Q ss_pred cccccccccccceE--EeCCCCcccchhhhhcC--CCCCCCcccccc
Q 001297 1057 HMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC--SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~v--l~PCgH~~~C~~C~~~~--~~CPiCR~~i~~ 1099 (1105)
..|.-| +.++-+. ++||.|. ||-+|+..- +.||.|--.|.+
T Consensus 91 HfCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRC-DFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred Eeeccc-CCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 468888 3333322 4799998 999997655 479999887765
No 343
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.93 E-value=70 Score=35.74 Aligned_cols=19 Identities=32% Similarity=0.442 Sum_probs=7.3
Q ss_pred HHHHHhhhhhHHHHHHHHH
Q 001297 716 LQEQLQNKCSENKKLQEKV 734 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl 734 (1105)
.++.|..++..+..|..++
T Consensus 24 a~~~L~e~e~~a~~Leek~ 42 (246)
T PF00769_consen 24 AQEALEESEETAEELEEKL 42 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 344
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.71 E-value=69 Score=31.90 Aligned_cols=43 Identities=30% Similarity=0.360 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
+|..++-|+..|.+++..|..+...+.+ ||-+|+..|..+...
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~---------------------Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELRE---------------------EIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666 666666666655443
No 345
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.64 E-value=6.1 Score=38.57 Aligned_cols=44 Identities=32% Similarity=0.391 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+.+..+.+.+..--.++..+|+....|.|||..|..+|++|-+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666678889999999999999999999999888
No 346
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.45 E-value=1.5e+02 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 856 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v 856 (1105)
.-|..++..|..++.....+.-..-.|--.-......+..+.+.+..++..+.....+|.+||+.-+ ..|+.||+-+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~M 492 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR---RNYEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHH
Confidence 3346677777777777777776666665555556666677788888888888888888888877665 5788888554
Q ss_pred hc
Q 001297 857 NG 858 (1105)
Q Consensus 857 ~~ 858 (1105)
++
T Consensus 493 SE 494 (518)
T PF10212_consen 493 SE 494 (518)
T ss_pred HH
Confidence 43
No 347
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.18 E-value=1.5 Score=42.58 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=19.0
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334557889999999999876
No 348
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.48 E-value=1.4e+02 Score=34.69 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=97.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcc-CCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001297 607 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSV-NDPDGSK-------VQIQNLEREIQEKRRQMRILEQRIIENGEA 678 (1105)
Q Consensus 607 ~~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~-~~~~~~~-------~Q~q~L~~qlrdKeeei~~L~qki~~s~~~ 678 (1105)
.....+++.+-=-++|..-+.++..-.+.+.++-. .||.-.+ .-+.-+..|++-.+..-+.+-+++==-=
T Consensus 60 ~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeW-- 137 (312)
T smart00787 60 CTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEW-- 137 (312)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34456788887788888888888888888777655 4443221 1233556666666666655555540000
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 001297 679 SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS 758 (1105)
Q Consensus 679 s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ 758 (1105)
-.+-+.-|+..|+++ ++....|...|..+++....-...+.++.+.|+..+.......... +. --
T Consensus 138 ---------R~kllegLk~~L~~~---~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-~~--~d 202 (312)
T smart00787 138 ---------RMKLLEGLKEGLDEN---LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-ED--CD 202 (312)
T ss_pred ---------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-Hh--CC
Confidence 012244455555554 3444556666666666666666666666666666653322211100 00 01
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+.+..+++.+..+..+++..+.+...+.++...+....+....
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555566666666666666666665555555555554444
No 349
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=78.35 E-value=1.2 Score=41.71 Aligned_cols=38 Identities=32% Similarity=0.804 Sum_probs=30.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccc
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISD 1099 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~ 1099 (1105)
...|.+| ...|-.+=.| +|..|++.-..|.+|.+.|..
T Consensus 44 ~~~C~~C----K~~v~q~g~~--YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKIC----KTKVHQPGAK--YCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Ccccccc----ccccccCCCc--cChhhhcccCcccccCCeecc
Confidence 3479999 6666555555 699999999999999999854
No 350
>PRK10869 recombination and repair protein; Provisional
Probab=78.21 E-value=1.9e+02 Score=36.21 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=10.5
Q ss_pred EEeccCCCCCcccc
Q 001297 178 FAYGVTSSGKTHTM 191 (1105)
Q Consensus 178 faYGqTGSGKTyTm 191 (1105)
.-.|.||||||-.|
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 35699999997544
No 351
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.75 E-value=1.2e+02 Score=33.68 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHH
Q 001297 652 QNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIK 709 (1105)
Q Consensus 652 q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k 709 (1105)
.+|+.+..+..+.=..|+.|++.-- -.+.|+.++|..|++++.=.+..|+..
T Consensus 118 ~~lkqQ~~~a~RrE~ilv~rlA~kE------QEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 118 EKLKQQQQEAARRENILVMRLATKE------QEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3455555555544445555554222 155677788888888888888888765
No 352
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.65 E-value=57 Score=33.39 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
..-.+..+.+......+..++..|...+++|.+.-.....-...+......+-.++..+...+..+.+|+...+..+...
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677777777777777777777666666666667777777888888888888888888888888666666
Q ss_pred HHhh
Q 001297 850 GAAM 853 (1105)
Q Consensus 850 e~qi 853 (1105)
.+|+
T Consensus 128 ~tq~ 131 (151)
T PF11559_consen 128 KTQY 131 (151)
T ss_pred HHHH
Confidence 5544
No 353
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.49 E-value=82 Score=32.88 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+.++.+.+.|......|..+|..|.. .+++++..+.+|+....+|..++....
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~--------------~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLEL--------------KLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhhhhccccchhHHHHHHHHHHHH
Confidence 34455555555555555555555543 223333456666666666655544443
No 354
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=1.7e+02 Score=35.18 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~ 673 (1105)
+|...+.|=+.+++.|++++.
T Consensus 283 rl~e~l~dgeayLaKL~~~l~ 303 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLA 303 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHH
Confidence 445555566677777777775
No 355
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.32 E-value=62 Score=38.66 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=7.5
Q ss_pred CceEEEEEEEEe
Q 001297 294 RSHTIFTLMIES 305 (1105)
Q Consensus 294 RSH~If~I~v~~ 305 (1105)
-.|++|...|+-
T Consensus 147 ~Chll~V~~ve~ 158 (493)
T KOG0804|consen 147 VCHLLYVDRVEV 158 (493)
T ss_pred ceeEEEEEEEEE
Confidence 357777665554
No 356
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=77.24 E-value=71 Score=36.38 Aligned_cols=139 Identities=24% Similarity=0.239 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH------HHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLA------EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 848 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~------~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~ 848 (1105)
+||-+.-|++.|.--+.+--.+.+||+ +|+.-+.+.+..| ..|.-.+|..|..+.+-|+.||+.+|-.+.-
T Consensus 15 QiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNa---vrdYqrq~~elneEkrtLeRELARaKV~aNR 91 (351)
T PF07058_consen 15 QIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANA---VRDYQRQVQELNEEKRTLERELARAKVSANR 91 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345555566666666666555666554 4555555555555 3445557777778888888888877744321
Q ss_pred HHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001297 849 RGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEY 928 (1105)
Q Consensus 849 ~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL 928 (1105)
. +.+ +++--.++-.+ .-+-.+|---+|.++-+++-.++.++--|..-.+..|+.+-
T Consensus 92 V-A~v-------------vANEWKD~nDk---------vMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK- 147 (351)
T PF07058_consen 92 V-ATV-------------VANEWKDENDK---------VMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEK- 147 (351)
T ss_pred h-hhh-------------hcccccccCCc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 111 01100111111 00122232367788888888888887766554333343333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001297 929 RKKVEESKRREEALENDL 946 (1105)
Q Consensus 929 ~~k~ee~kk~~~~L~~EL 946 (1105)
++.++..|+..|
T Consensus 148 ------~klRLK~LEe~L 159 (351)
T PF07058_consen 148 ------LKLRLKVLEEGL 159 (351)
T ss_pred ------HHHHHHHHHhhc
Confidence 345556666655
No 357
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=0.62 Score=52.61 Aligned_cols=50 Identities=18% Similarity=0.610 Sum_probs=32.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcc--cccceeecc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRT--KISDRLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~--~i~~~i~if 1104 (1105)
....|.||.....+-.++----++||..|... ...||+-.. .+++.+++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 34589999886655433334334599999765 377998554 455556655
No 358
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.91 E-value=25 Score=39.18 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=5.1
Q ss_pred HHHhhHHHHHHHHH
Q 001297 825 VTKLSLQNAKLEKE 838 (1105)
Q Consensus 825 v~kL~~~N~qL~~E 838 (1105)
|..++.+...|..+
T Consensus 79 v~~q~~el~~L~~q 92 (251)
T PF11932_consen 79 VASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 359
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.87 E-value=45 Score=35.75 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 789 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee 789 (1105)
+.+...++.++.....++..++.++..++..+.....+. ....|...+..+...|..+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r----------------------~~~~eR~~~l~~l~~l~~~ 118 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR----------------------EESEEREELLEELEELKKE 118 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------cccHHHHHHHHHHHHHHHH
Confidence 556677778888888888888888888888873322111 1113344455555555566
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhh
Q 001297 790 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVN 857 (1105)
Q Consensus 790 ~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi----q~v~ 857 (1105)
+..|..+++++..- --..-.++..++..++..+..|--.| +|+.
T Consensus 119 ~~~l~~el~~~~~~------------------------Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 119 LKELKKELEKYSEN------------------------DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666555544330 01233455666777788888888777 6654
No 360
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.56 E-value=2.4 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.1
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|-+.+||.||++|+|||.|+-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678999999999999974
No 361
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.41 E-value=1.2e+02 Score=33.07 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
....-..++++...+.....++..+-...+. -+..+||..|..+.+.....+..|..+..++...+..++..+...+.
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~--~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ 127 (219)
T TIGR02977 50 TIADKKELERRVSRLEAQVADWQEKAELALS--KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQA 127 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443 33445666555555555555555555555555554444444444444
Q ss_pred hh
Q 001297 852 AM 853 (1105)
Q Consensus 852 qi 853 (1105)
+|
T Consensus 128 ki 129 (219)
T TIGR02977 128 KL 129 (219)
T ss_pred HH
Confidence 44
No 362
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.35 E-value=3e+02 Score=37.41 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 713 NRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 713 ~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
...++.++.....++..++..+..++..+
T Consensus 618 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 646 (1047)
T PRK10246 618 RHELQGQIAAHNQQIIQYQQQIEQRQQQL 646 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666663
No 363
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.30 E-value=1.9e+02 Score=35.18 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=8.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 001297 720 LQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 720 L~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+......+..++.++..++.++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~ 195 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALK 195 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 364
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=76.17 E-value=1.1e+02 Score=33.94 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 611 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 611 ~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.++.|..|.++|..-.++-..++.-|+..-+. ......=.++-+..+.|..+.++.+
T Consensus 44 ~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~------~~Ls~als~laev~~~i~~~~~~qa 100 (234)
T cd07665 44 VVETLVNHRKELALNTALFAKSLAMLGSSEDN------TALSRALSQLAEVEEKIEQLHQEQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888876666666666655544432 4445555677777888877777774
No 365
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.17 E-value=36 Score=40.13 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 801 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~ 801 (1105)
..++++++..+.|+.+|+.|+..|.|+-.+....-..++
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t 82 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLT 82 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544333333333
No 366
>PRK12704 phosphodiesterase; Provisional
Probab=76.13 E-value=38 Score=41.93 Aligned_cols=54 Identities=20% Similarity=0.119 Sum_probs=22.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhH
Q 001297 768 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLA 822 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~ 822 (1105)
.+..++.++++.+.+...+.++......+.-.|+. +.....|....+.+++.=+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~-~ea~~~l~~~~~~~~~~~~ 171 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISGLTA-EEAKEILLEKVEEEARHEA 171 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333333332 3344455555555554433
No 367
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.09 E-value=2.8e+02 Score=36.98 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNL 633 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~l 633 (1105)
.+.+..+.+....++-.....|
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~l 190 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEEL 190 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3434444443333333333333
No 368
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.02 E-value=1.6e+02 Score=34.21 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.+.|.+.|.+=+..+..++..+.
T Consensus 77 c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666663
No 369
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=75.47 E-value=1.4 Score=52.46 Aligned_cols=44 Identities=25% Similarity=0.847 Sum_probs=35.4
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhhcC----CCCCCCcccccce
Q 001297 1056 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC----SECPICRTKISDR 1100 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl-~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 1100 (1105)
...|.+|..--.+.+. ..|||. ||..|.... ..||.|+..+...
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 3489999998888888 599999 999995433 5799999877654
No 370
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.32 E-value=1.3 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=14.9
Q ss_pred EEEeccCCCCCccccCC
Q 001297 177 VFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~G 193 (1105)
++.+|.||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999864
No 371
>PRK06921 hypothetical protein; Provisional
Probab=74.87 E-value=2.5 Score=47.65 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=24.5
Q ss_pred HHhhhhHHHHHHHhc---CCCeEEEEeccCCCCCccccCC
Q 001297 157 VYDVAARPVVKAAME---GVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 157 Vy~~~~~plV~~~l~---G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
+|. .+...++.+-. +....|+-||++|+||||.+.+
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 443 44456665532 2345689999999999999864
No 372
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.54 E-value=93 Score=36.89 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001297 707 EIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 707 ~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
-+..|+-+++..-|+.+|.++..|+++...+....++
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888999999999999999888888744
No 373
>PF13245 AAA_19: Part of AAA domain
Probab=74.34 E-value=1.9 Score=39.09 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 33445558999999999985
No 374
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.34 E-value=2.7 Score=50.02 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=30.2
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcC----CCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G----~n~tIfaYGqTGSGKTyTm 191 (1105)
.+.||.|.+-+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 355566555444444555544444443 22222 2346899999999999875
No 375
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.30 E-value=2.3 Score=51.53 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=32.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHH--hcC--CCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAA--MEG--VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~--l~G--~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||..+.. ..+.-.|. .+..+.... ..| || .+|-||++|+||||.+.
T Consensus 106 ~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 106 PLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 46999987643 35555554 444444322 223 45 36789999999999985
No 376
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.14 E-value=1e+02 Score=36.15 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCcch
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN-DPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG---EASMANAS 684 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~-~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~---~~s~~~~~ 684 (1105)
.+.++.+.+|++.+..++..-...|..|-....- +|+ .+...+...+.+.+.++..++.++.... ...+| .
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~---~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P--~ 243 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPK---AQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP--Q 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--c
Confidence 4667899999999999999999999988877654 332 2333344445555555555555553332 22234 5
Q ss_pred hHHHHHHHHHHHHhhhh
Q 001297 685 MVDMQQTVTRLMSQCNE 701 (1105)
Q Consensus 685 ~~e~~q~~~~L~~~l~e 701 (1105)
+..+..++..|+.++++
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56778888888888765
No 377
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.95 E-value=2.2e+02 Score=35.53 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCch
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSK 648 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~ 648 (1105)
.++..++++.+....+.-+-.-.+.+|.+.+-+..++++
T Consensus 171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~ 209 (557)
T COG0497 171 RELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEE 209 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 567778888877777777777777777777655443333
No 378
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=73.94 E-value=1.4e+02 Score=32.38 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHH
Q 001297 685 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDE 764 (1105)
Q Consensus 685 ~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~e 764 (1105)
+..||+.++.|.+.+++.. .+.-+| ...|+++|..|+-|..+..- ....-.+.....
T Consensus 5 v~~LQ~AL~~LQaa~ekRE-----------~lE~rL------R~~lE~EL~~lr~qq~~~~~------~~~~~~~~~~~~ 61 (205)
T PF12240_consen 5 VERLQQALAQLQAACEKRE-----------QLERRL------RTRLERELESLRAQQRQGNS------SGSSSPSNNASN 61 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHH------HHHHHHHHHHHHHhhccCCC------CCCCCCCCcHHH
Confidence 3467888888888776431 111111 13478888888888733222 111112234566
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhh
Q 001297 765 LRKKVQSQETENEKLKLEHVQLSEEN 790 (1105)
Q Consensus 765 l~~~l~~q~~E~e~lk~e~~~L~Ee~ 790 (1105)
|+..|..+.+.|=.|+.+...|.+.|
T Consensus 62 L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 62 LKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888887777655
No 379
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=73.84 E-value=7.5 Score=45.78 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=39.0
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhc----CCCeEEEEeccCCCCCcccc
Q 001297 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME----GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 139 ~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~----G~n~tIfaYGqTGSGKTyTm 191 (1105)
...+.||++.+.-.--..+.+.++-.++.+++. -.---|.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 345788888776666677777777788888774 23345778999999999753
No 380
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.82 E-value=2.3 Score=50.72 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=34.3
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc--C--CCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G--~n~tIfaYGqTGSGKTyTm 191 (1105)
.++|+.|-+.+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467777777655555666555555553 2333 2 2457899999999999876
No 381
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.46 E-value=1.3e+02 Score=31.84 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=14.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHH
Q 001297 719 QLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 719 qL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.+....+.+.|+.+++.+++++
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777776
No 382
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.36 E-value=1.6e+02 Score=37.82 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=81.7
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhh-
Q 001297 651 IQNLEREIQE------KRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK- 723 (1105)
Q Consensus 651 ~q~L~~qlrd------Keeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a- 723 (1105)
++.|+.++.+ .+++|+.++.-|.+++..+.. .--.++...|.+++.+.+.. ++-=+++.+.... +.|.-.
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~-~~~~~lkeki~~~~~Ei~~e-ie~v~~S~gL~~~-~~~k~e~ 636 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGD-ELDDDLKEKVEKMKKEIELE-LAGVLKSMGLEVI-GVTKKNK 636 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccC-CCCHHHHHHHHHHHHHHHHH-HHHHHhccCchhh-hhhhhhh
Confidence 5677777777 999999999999885533222 23337788888887766532 1111223333333 222211
Q ss_pred -hh---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHh--------hHHHHHHHHHHHHH-HHhhh
Q 001297 724 -CS---ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS--------QETENEKLKLEHVQ-LSEEN 790 (1105)
Q Consensus 724 -~~---e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~--------q~~E~e~lk~e~~~-L~Ee~ 790 (1105)
.+ =...+..+|+.|.++..+++|.-- ...++.+.+.+|+..+.+ -++-||.|+++++. |.+..
T Consensus 637 a~~~~~p~~~~k~KIe~L~~eIkkkIe~av----~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~ 712 (762)
T PLN03229 637 DTAEQTPPPNLQEKIESLNEEINKKIERVI----RSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEAL 712 (762)
T ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 11 123457788888888877777211 113355555555543321 13567777776543 33332
Q ss_pred --hhHHHHHHHHHHHHh
Q 001297 791 --SGLHVQNQKLAEEAS 805 (1105)
Q Consensus 791 --~~L~~e~~kL~~e~~ 805 (1105)
..|+.+.+.|..|..
T Consensus 713 ~~~~lkek~e~l~~e~~ 729 (762)
T PLN03229 713 NSSELKEKFEELEAELA 729 (762)
T ss_pred ccHhHHHHHHHHHHHHH
Confidence 345666666665433
No 383
>PRK10436 hypothetical protein; Provisional
Probab=73.14 E-value=2 Score=52.05 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.5
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..++..-+|.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778999999999999999985
No 384
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.05 E-value=1.9 Score=53.70 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556777778999999999999999985
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.03 E-value=2.2 Score=52.23 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555677778899999999999999995
No 386
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.92 E-value=37 Score=42.00 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 842 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~ 842 (1105)
..+...++...+|+..|+.++..+..++..|..+++.+..+.. .+.-. -.++..++..+..|+.+|+++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~~---------~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKVRK---------DREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh---------hHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666666666666666666555333 11111 126777888888888888888
Q ss_pred HHHHHHHHHhh
Q 001297 843 RESMHSRGAAM 853 (1105)
Q Consensus 843 k~~~~~~e~qi 853 (1105)
+..+.+.+..+
T Consensus 494 ~~~ve~L~~~l 504 (652)
T COG2433 494 KKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHH
Confidence 87777776544
No 387
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=72.87 E-value=1.7e+02 Score=32.99 Aligned_cols=199 Identities=19% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccCCCcchhHHHHHHHHHH
Q 001297 620 KMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKR----RQMRILEQRIIENGEASMANASMVDMQQTVTRL 695 (1105)
Q Consensus 620 k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKe----eei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L 695 (1105)
+....|+..|...|. .-.+.|-..|.+-+ ...+.|.+|....++ .++-+...-.+.
T Consensus 5 r~sl~el~~h~~~L~--------------~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~------~i~~le~~~~~~ 64 (258)
T PF15397_consen 5 RTSLQELKKHEDFLT--------------KLNKELIKEIQDTEDSTALKVRKLLQQYDIYRT------AIDILEYSNHKQ 64 (258)
T ss_pred HHHHHHHHHHHHHHH--------------HhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH------HHHHHHccChHH
Q ss_pred HHhhhhhhHHHHHHHH-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHH
Q 001297 696 MSQCNEKAFELEIKSA-DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQET 774 (1105)
Q Consensus 696 ~~~l~e~~~el~~k~a-e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~ 774 (1105)
+.+.+.-.-+.+.+.. ....|++||...++++...+++|.-|.-=. ...=....-....-...+.+.-..|..
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk------D~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK------DHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 775 ENEKLKLEHVQLSEENSG-LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~-L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
|++++..-.......... ...+.+++.. +++.--+..+-.-+-....+|..+..++..-+..+.+++..|
T Consensus 139 Eldel~e~~~~el~~l~~~~q~k~~~il~---------~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 139 ELDELNEMRQMELASLSRKIQEKKEEILS---------SAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.71 E-value=1.7e+02 Score=32.89 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGE--ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 726 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~--~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e 726 (1105)
...+.|...+......|..+..++..... ...+..+...+..++.+++.++..+ .+..+...|+.|
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r------------~f~~~~~~Ae~E 154 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR------------DFTPQRQNAEDE 154 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc------------cchhHHHHHHHH
Confidence 34556777777777777777777755544 1223334444555555555555543 355666666777
Q ss_pred HHHHHHHHHHHHHHH
Q 001297 727 NKKLQEKVNLLEQQL 741 (1105)
Q Consensus 727 ~~~l~~kl~~lk~~l 741 (1105)
..+++.=+.+.+..+
T Consensus 155 l~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 155 LKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655555554
No 389
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=72.63 E-value=0.89 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=18.2
Q ss_pred ccccccccc---cceEEeCCCCcccchhh
Q 001297 1058 MCKVCFESP---TAAILLPCRHFCLCKSC 1083 (1105)
Q Consensus 1058 ~C~IC~~~~---~~~vl~PCgH~~~C~~C 1083 (1105)
.|+||+--. -..++.+|.|+ |-..|
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy-~H~~C 144 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHY-MHFAC 144 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHH-HHHHH
Confidence 688876633 34778899999 66667
No 390
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.44 E-value=2.9 Score=47.59 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=22.0
Q ss_pred hhHHHHHHHhcC-CCeEEEEeccCCCCCccccC
Q 001297 161 AARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 161 ~~~plV~~~l~G-~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..++.+.+.| .---.+-||+.|+|||.|..
T Consensus 43 ~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 43 HVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333344444544 44567889999999999974
No 391
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=72.30 E-value=4.3 Score=48.95 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=46.6
Q ss_pred EEEEEeCCCChhh-hccCCeEEEeecCCEEEecC---CC---------CCcceeeceecCCCCChhHHHhhhhHHHHHH-
Q 001297 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNE---YN---------PATAYAFDRVFGPHANSQEVYDVAARPVVKA- 168 (1105)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~i~~~~---~~---------~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~- 168 (1105)
..+|++.++.+.+ +..|..+.+......++..- .+ ..-.-+|+.|.+-+..-+.+.+.+..|+...
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5788888887765 45666666554333322110 00 0111344555443333344444444444432
Q ss_pred Hhc--CC--CeEEEEeccCCCCCcccc
Q 001297 169 AME--GV--NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 169 ~l~--G~--n~tIfaYGqTGSGKTyTm 191 (1105)
.+. |. .-.|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 122 21 234778999999999886
No 392
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.26 E-value=1.4 Score=42.98 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.6
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
..+++.||.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999999874
No 393
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=72.16 E-value=13 Score=47.17 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=8.7
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCC--------CCCCcHHHHHHHHHHHHhhHHHHHHHHH
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSS--------GQGTSDEYVDELRKKVQSQETENEKLKL 781 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~--------~~~~~ee~~~el~~~l~~q~~E~e~lk~ 781 (1105)
......|++.+.....+....+.+++.+..++..+|+--....+ ..+-....+.. =+.|+++|+.
T Consensus 206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~-------l~~El~RL~~ 278 (619)
T PF03999_consen 206 DENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEA-------LEEELERLEE 278 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHH-------HHHHHHHHHH
Confidence 44566777777777777777888888888887776661111100 00111111211 2234444433
Q ss_pred HH-HHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHH--HHHhhHHHHHHHHHHHHHH---HHHHHHHHhh
Q 001297 782 EH-VQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE--VTKLSLQNAKLEKELLAAR---ESMHSRGAAM 853 (1105)
Q Consensus 782 e~-~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~e--v~kL~~~N~qL~~El~~~k---~~~~~~e~qi 853 (1105)
-+ +.|.+=..++..+++.|-+..+|..+--.+|..-..|.--+ ++..+.+-.+|.++++..+ +.+..|+.-+
T Consensus 279 lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~ 356 (619)
T PF03999_consen 279 LKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLW 356 (619)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333346677788888887777665555543333222111 3344555556665544433 2334554443
No 394
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.14 E-value=1.6 Score=47.53 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.5
Q ss_pred EEEeccCCCCCccccC
Q 001297 177 VFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~ 192 (1105)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999999985
No 395
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.09 E-value=1.6e+02 Score=34.04 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhhh
Q 001297 687 DMQQTVTRLMSQCNE 701 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e 701 (1105)
-|..+|.-|+-.|.+
T Consensus 109 ~l~yqvd~Lkd~lee 123 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEE 123 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
No 396
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.93 E-value=4.9 Score=46.92 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCC-CCCcccccccccccccceEEe
Q 001297 1029 PLVARLKARMQEMKEKEQKYQGN-GDPNSHMCKVCFESPTAAILL 1072 (1105)
Q Consensus 1029 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~C~IC~~~~~~~vl~ 1072 (1105)
...++..+...+.-......... .......|.-|+..+.++.|.
T Consensus 243 tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 243 TLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred CHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEE
Confidence 34555555444444333333333 334566899999999998885
No 397
>PRK02119 hypothetical protein; Provisional
Probab=71.50 E-value=14 Score=33.45 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q 001297 726 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 793 (1105)
Q Consensus 726 e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L 793 (1105)
++..++..|.+|+.++ +-.+..+.+|+.++-.|..+|+.+++....|.+....+
T Consensus 3 ~~~~~e~Ri~~LE~rl--------------a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKI--------------AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666777777776 34566778999999999999999999888887655443
No 398
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=71.41 E-value=4 Score=51.77 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=54.9
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCC---CCCCCchh----HHHHHHHHhhcc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQD 214 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~---~~~~GIip----ra~~~LF~~i~~ 214 (1105)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||..- ...|-||- ..+..|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557888888887764 555555664333 37899999999999652 11222221 233445554433
Q ss_pred C-CCceEEEEEeeeeeeccee
Q 001297 215 T-PGREFLLRVSYLEIYNEVI 234 (1105)
Q Consensus 215 ~-~~~~~~v~vS~lEIYnE~i 234 (1105)
. ++..+...|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 2 4555788999999996654
No 399
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.22 E-value=32 Score=30.09 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 706 LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 706 l~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
|..-.+++-.++.+|++++.++.+|..+|..|+.++
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355888899999999999999999999999988
No 400
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.20 E-value=2.6e+02 Score=34.46 Aligned_cols=75 Identities=25% Similarity=0.240 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
..+|||.+++|++.|-|-...|.. -+.+..+..+++-..+ --|+.-+.+++....-|.--|+.++++....++
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~---~l~eke~sl~dlkeha----ssLas~glk~ds~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLKEHA----SSLASAGLKRDSKLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 357899999999999988888877 3444333444333222 112223334444444455557778888888888
Q ss_pred hh
Q 001297 852 AM 853 (1105)
Q Consensus 852 qi 853 (1105)
|+
T Consensus 402 qL 403 (654)
T KOG4809|consen 402 QL 403 (654)
T ss_pred HH
Confidence 87
No 401
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.98 E-value=2.3 Score=47.60 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=20.9
Q ss_pred eeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEE
Q 001297 256 VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIF 299 (1105)
Q Consensus 256 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If 299 (1105)
|+.-+.+.|.++.....+..+|. + .....+||.|+|+
T Consensus 63 vK~~tvh~vstpq~sKai~~k~q---H----siSytlsrnqsVv 99 (429)
T KOG3842|consen 63 VKPSTVHIVSTPQASKAISDKGQ---H----SISYTLSRNQSVV 99 (429)
T ss_pred cccceeEEecChhhhhhhhcccc---c----eEEEEecCCceEE
Confidence 45556677777766555544332 2 2334567777765
No 402
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.97 E-value=3.5 Score=46.15 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=31.0
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
.|.|..+-.....+..+|.. +..++..+-.| ..++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~--~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERG--ENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccC--CcEEEECCCCCcHHHHHHH
Confidence 44443333344456667753 34455555533 4467899999999998764
No 403
>PRK10698 phage shock protein PspA; Provisional
Probab=70.87 E-value=1.7e+02 Score=32.19 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 764 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 764 el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+++..+.....+-..++++...+.....++..+=..... -+..+||..|-.+.+.+.+.+..|..+..+....+..++
T Consensus 42 ~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~ 119 (222)
T PRK10698 42 EVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMK 119 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555555555554444444 334556666555555555555555555444444444444
Q ss_pred HHHHHHHH
Q 001297 844 ESMHSRGA 851 (1105)
Q Consensus 844 ~~~~~~e~ 851 (1105)
..+...+.
T Consensus 120 ~~l~~L~~ 127 (222)
T PRK10698 120 KEIGELEN 127 (222)
T ss_pred HHHHHHHH
Confidence 33333333
No 404
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.81 E-value=2.2 Score=47.76 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.5
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5777888999999999984
No 405
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=70.78 E-value=2.5 Score=42.96 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
++..++.|.| ++..|+||+|||+.+.
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3455666766 7889999999999874
No 406
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.53 E-value=20 Score=39.02 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 708 IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 708 ~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
...+|...|+++|.....+...++++++.++.|.
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777776
No 407
>PRK09183 transposase/IS protein; Provisional
Probab=70.40 E-value=2.6 Score=47.21 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=26.3
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 144 FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
||.-|.+..+...|..-..-.. +-.|.| |+-||++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4444555555544443222122 224544 66799999999998853
No 408
>PRK00106 hypothetical protein; Provisional
Probab=70.30 E-value=2.4e+02 Score=35.21 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAG 823 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ 823 (1105)
..++.++++.+.+...+.++......+.-.|+. +.....|+...+.+++.-+.
T Consensus 135 e~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~-~eak~~l~~~~~~~~~~~~~ 187 (535)
T PRK00106 135 TDKSKHIDEREEQVEKLEEQKKAELERVAALSQ-AEAREIILAETENKLTHEIA 187 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333332222222322 33445555555555544333
No 409
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.12 E-value=1.7e+02 Score=34.11 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHH
Q 001297 788 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 837 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~ 837 (1105)
+-..++..++.+|.++..----..++|+|--|-|-.++.|++.....|-.
T Consensus 152 elsekia~emr~lede~~r~~mrtkaaavatkpledelekieekkeeli~ 201 (637)
T KOG4421|consen 152 ELSEKIADEMRDLEDETERIAMRTKAAAVATKPLEDELEKIEEKKEELIG 201 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchhHHHHHHHHHHHHhc
Confidence 33445566667777766666667788888888888888888777666643
No 410
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.01 E-value=2.7 Score=49.13 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=21.0
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..++.--.+.|+..|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344444345789999999999999985
No 411
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.99 E-value=1.7e+02 Score=35.22 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=23.3
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 698 QCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 698 ~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
||+.+.-.|+.+..+...++..+...+++-.-++.++..+..++
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555554444444
No 412
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.92 E-value=2.8 Score=49.51 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.3
Q ss_pred CCeEEEEeccCCCCCccccC
Q 001297 173 VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++.|+..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999984
No 413
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.91 E-value=3.6e+02 Score=35.50 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=14.7
Q ss_pred CchhhHHHHHHHHHHHHHHHhhH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSS 630 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~ 630 (1105)
..-+|..|+.|++-|..|+..+.
T Consensus 328 ~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 328 KSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777777777776666543
No 414
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.87 E-value=5.5 Score=46.79 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=28.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHH-Hhc--CC--CeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKA-AME--GV--NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~-~l~--G~--n~tIfaYGqTGSGKTyTm 191 (1105)
.+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3555655554444344444443333321 121 21 345899999999999886
No 415
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.73 E-value=78 Score=28.24 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
..|.+++++-..-|.-|.-|+..|-|.|..|..+.+.+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~ 44 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 33343333333333344444444444444444444333
No 416
>PF15294 Leu_zip: Leucine zipper
Probab=69.62 E-value=99 Score=35.13 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=82.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 687 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e 687 (1105)
...+++.|+++-+.|.+.+ +.+..++... --.+.+|..++++..........+-. ......++++
T Consensus 130 l~kEi~rLq~EN~kLk~rl-------~~le~~at~~----l~Ek~kl~~~L~~lq~~~~~~~~k~~----~~~~~q~l~d 194 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERL-------KSLEKQATSA----LDEKSKLEAQLKELQDEQGDQKGKKD----LSFKAQDLSD 194 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcccc----ccccccchhh
Confidence 3355666666666555444 3333333210 01244666666666552222221110 1223346778
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 767 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~ 767 (1105)
|+..++.++.++++. +.-+......|++-|..+-++....+..+......+-.+.- . -..+..++.
T Consensus 195 LE~k~a~lK~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfq------q-----T~ay~NMk~ 260 (278)
T PF15294_consen 195 LENKMAALKSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQ------Q-----TAAYRNMKE 260 (278)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhC------c-----cHHHHHhHH
Confidence 999999998877765 22233466777788887777777777776666655522222 1 123556677
Q ss_pred HHHhhHHHHHHHHHH
Q 001297 768 KVQSQETENEKLKLE 782 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e 782 (1105)
++.++..||.++...
T Consensus 261 ~ltkKn~QiKeLRkr 275 (278)
T PF15294_consen 261 ILTKKNEQIKELRKR 275 (278)
T ss_pred HHHhccHHHHHHHHH
Confidence 778888888877654
No 417
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.40 E-value=2.1 Score=40.97 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCccccC
Q 001297 175 GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~ 192 (1105)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 468889999999999985
No 418
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=69.24 E-value=1.7 Score=48.96 Aligned_cols=42 Identities=31% Similarity=0.775 Sum_probs=29.2
Q ss_pred ccccccccc----ccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1057 HMCKVCFES----PTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~----~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
..|+.|++. .++..=.|||-. +|..|.... ..||.||...+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 359999984 233343456665 899997654 459999987654
No 419
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.19 E-value=2.1 Score=45.81 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999984
No 420
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.02 E-value=3 Score=44.68 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4556666555566678999999999984
No 421
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.95 E-value=2.2e+02 Score=32.80 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=18.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++..|+.+|..-..++..|+.++..++..-
T Consensus 35 en~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 35 ENRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556566666666666666666655
No 422
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.94 E-value=3.8 Score=40.88 Aligned_cols=47 Identities=30% Similarity=0.894 Sum_probs=32.7
Q ss_pred CCcccccccccccccceEEe-C---CCCcccchhhhhc-------CCCCCCCcccccce
Q 001297 1053 DPNSHMCKVCFESPTAAILL-P---CRHFCLCKSCSLA-------CSECPICRTKISDR 1100 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~-P---CgH~~~C~~C~~~-------~~~CPiCR~~i~~~ 1100 (1105)
++.--+|.||.+.-.+-=|+ | || +-+|..|-.. .++||+|+..|.+.
T Consensus 77 d~~lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 77 DPKLYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCCceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 33344899999876665543 3 66 4599999322 37899999988764
No 423
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.69 E-value=4.3 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHhcCCCeEEEEeccCCCCCccccC
Q 001297 168 AAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 168 ~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..+....+.++-+|++|+|||+.+.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344446678899999999998763
No 424
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.50 E-value=3.3 Score=43.71 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.0
Q ss_pred CeEEEEeccCCCCCccccCC
Q 001297 174 NGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G 193 (1105)
.-.|+-||++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998764
No 425
>PF12846 AAA_10: AAA-like domain
Probab=68.32 E-value=2.2 Score=47.74 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.4
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567899999999999885
No 426
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.90 E-value=3.2 Score=48.83 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.4
Q ss_pred CCCeEEEEeccCCCCCccccC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
--++.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346899999999999999984
No 427
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.77 E-value=1.5e+02 Score=35.00 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIE 674 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~ 674 (1105)
.|..+|..++..--+.|..-++.|-.
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk~iN~ 266 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREKYINN 266 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777766653
No 428
>PRK11546 zraP zinc resistance protein; Provisional
Probab=67.59 E-value=36 Score=34.86 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhH
Q 001297 607 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 686 (1105)
Q Consensus 607 ~~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~ 686 (1105)
.+.+|.+ +++.+.++|...+..|+ .++..|+.++..|+.. ..|...-+.
T Consensus 44 LT~EQQa----~~q~I~~~f~~~t~~LR---------------------qqL~aKr~ELnALl~~------~~pD~~kI~ 92 (143)
T PRK11546 44 LTTEQQA----AWQKIHNDFYAQTSALR---------------------QQLVSKRYEYNALLTA------NPPDSSKIN 92 (143)
T ss_pred CCHHHHH----HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence 4555543 45556677766555554 8899999999888652 223333366
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSA 711 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~a 711 (1105)
.+.++|..|..+|.+.-+++++..+
T Consensus 93 aL~kEI~~Lr~kL~e~r~~~~~~~~ 117 (143)
T PRK11546 93 AVAKEMENLRQSLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999988888777776543
No 429
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.51 E-value=36 Score=30.47 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
|+..+..+...+..+..++.....+....--+|..|..++.+|..+++.|+.++
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555566777777889999999999999999999987
No 430
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.35 E-value=1.5e+02 Score=30.24 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=30.5
Q ss_pred HHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 693 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 693 ~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..+-.-+.+.....+.-..-...+.+++....+++..|...+.+|+.++
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444455666677777777777777777777777776
No 431
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.31 E-value=3.1e+02 Score=33.74 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHhhHHHHHHhhHHHHHHHHHHHH
Q 001297 816 VELKNLAGEVTKLSLQNAKLEKELLA 841 (1105)
Q Consensus 816 ~qlk~l~~ev~kL~~~N~qL~~El~~ 841 (1105)
.+.-.|..+|..|...|.++..|...
T Consensus 165 ~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 165 QERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666888888888888888443
No 432
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.29 E-value=1.9e+02 Score=31.39 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001297 652 QNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 652 q~L~~qlrdKeeei~~L~qki~ 673 (1105)
..|..-|+|.++.+..+.+-+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655555554
No 433
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=67.28 E-value=2.4 Score=47.05 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=70.3
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCe-EEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCce
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG-TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGRE 219 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~-tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~ 219 (1105)
...+|...+-+...+.+.+. ...++.|..+ -++-||..|+|||.++- .++.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhcC---
Confidence 35566666654444444443 3567777755 36779999999998763 2333322221
Q ss_pred EEEEEeeeeeecceeeeccCCCCCccceeecCCC--cEeeCceEEEeC-CHHHHHHHHHHHhhhcccccCCCCCCCCCce
Q 001297 220 FLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQG--TYVEGIKEEVVL-SPGHALSFIAAGEEHRHVGSNNFNLLSSRSH 296 (1105)
Q Consensus 220 ~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~~g--~~v~gl~e~~V~-s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH 296 (1105)
+-.+||..+.+.||-.-- -.++..+.- +|+.+|+--.-. ++..+..+|.-|...| ....-+.++|.|-|
T Consensus 81 ----LRlIev~k~~L~~l~~l~---~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRH 152 (249)
T PF05673_consen 81 ----LRLIEVSKEDLGDLPELL---DLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRH 152 (249)
T ss_pred ----ceEEEECHHHhccHHHHH---HHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhh
Confidence 557888888776663200 001111111 245555522222 2455556666555444 45555667777877
Q ss_pred EEE
Q 001297 297 TIF 299 (1105)
Q Consensus 297 ~If 299 (1105)
.|=
T Consensus 153 Lv~ 155 (249)
T PF05673_consen 153 LVP 155 (249)
T ss_pred ccc
Confidence 764
No 434
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=67.28 E-value=3.2e+02 Score=33.98 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=23.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 001297 767 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 821 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l 821 (1105)
+.+..++.++++++.+...+.++......+.-.|+. +.....|......+++.=
T Consensus 111 ~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~-~eak~~l~~~~~~~~~~~ 164 (514)
T TIGR03319 111 KELSNKEKNLDEKEEELEELIAEQREELERISGLTQ-EEAKEILLEEVEEEARHE 164 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHH
Confidence 334444444555544444444444333333333333 334445555555555443
No 435
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.96 E-value=3.7 Score=46.22 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 455555556778899999999999984
No 436
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=66.68 E-value=3.2e+02 Score=33.68 Aligned_cols=193 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 687 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e 687 (1105)
+..++|+|+|-..+|.+-++.....|+-|++.-..--.....|.|.|..+|.+...++
T Consensus 335 ~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~---------------------- 392 (531)
T PF15450_consen 335 TQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEW---------------------- 392 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----------------------
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 767 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~ 767 (1105)
....+..++...-=.....+....+++.++..-..|.++-.+.+..|.++..++.
T Consensus 393 ----~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kId--------------------- 447 (531)
T PF15450_consen 393 ----ESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKID--------------------- 447 (531)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhcc---------------------
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHH---HHHHHHhhHHHHHHh-hHHHHHHHHHHHHHH
Q 001297 768 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA---AAVELKNLAGEVTKL-SLQNAKLEKELLAAR 843 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a---~~~qlk~l~~ev~kL-~~~N~qL~~El~~~k 843 (1105)
.|.+....++..+-++...+...++-+-+++.+.|.-.=+ +..|++.|..-|.-- .-+|-+...|..---
T Consensus 448 ------tE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~~~qi~kle~siq~nKtiqn~kfntEtk~R~ 521 (531)
T PF15450_consen 448 ------TEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLATNQIMKLENSIQTNKTIQNLKFNTETKLRT 521 (531)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q ss_pred HHHHHHHHhh
Q 001297 844 ESMHSRGAAM 853 (1105)
Q Consensus 844 ~~~~~~e~qi 853 (1105)
+++++.+.++
T Consensus 522 ee~a~Lre~~ 531 (531)
T PF15450_consen 522 EEVAALRESM 531 (531)
T ss_pred HHHHHHHhcC
No 437
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.54 E-value=2e+02 Score=31.80 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001297 776 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQT 855 (1105)
Q Consensus 776 ~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~ 855 (1105)
+++.+-=...|......+..++.++.. .+.++.+...++..++...+.....|+.+-+
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~---------------------~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~- 76 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQ---------------------ALAQAIARQKQLERKLEEAQARAEKLEEKAE- 76 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001297 856 VNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEES 935 (1105)
Q Consensus 856 v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~ 935 (1105)
.++..+. |.|+. +.+++...||..+...+....++...++.+
T Consensus 77 ---------~Al~~g~-E~LAr----------------------------~al~~~~~le~~~~~~~~~~~~~~~~~~~l 118 (225)
T COG1842 77 ---------LALQAGN-EDLAR----------------------------EALEEKQSLEDLAKALEAELQQAEEQVEKL 118 (225)
T ss_pred ---------HHHHCCC-HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHhh
Q 001297 936 KRREEALENDLANMWVLVAKLK 957 (1105)
Q Consensus 936 kk~~~~L~~EL~~m~~~~~kl~ 957 (1105)
+..+..|+..+..+..-..-++
T Consensus 119 ~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 119 KKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 438
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.29 E-value=4.5 Score=45.13 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 162 ~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..+++..+.----|.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4567777777778899999999999999984
No 439
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.16 E-value=2.6 Score=53.35 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=23.3
Q ss_pred cccCCCCccchhcccCCCCCccceeEeeeCCC
Q 001297 376 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 407 (1105)
Q Consensus 376 hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~ 407 (1105)
.-+|+|-.|-.+|-+.++|-.-|++=.+++.+
T Consensus 892 ~~f~yd~vl~e~l~~~IdgkmpvlfkknLsSa 923 (1525)
T COG5219 892 TNFFYDLVLNECLYKNIDGKMPVLFKKNLSSA 923 (1525)
T ss_pred ehhHHHHHHHHHHHhccCcccchhhhhhhhhh
Confidence 45677778888888888887777776666543
No 440
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=66.11 E-value=1.9 Score=50.07 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=3.1
Q ss_pred cccccc
Q 001297 333 LFQLYE 338 (1105)
Q Consensus 333 lvDLa~ 338 (1105)
||||.|
T Consensus 241 LIDLCG 246 (416)
T PF04710_consen 241 LIDLCG 246 (416)
T ss_dssp EEE-SS
T ss_pred Chhhce
Confidence 666655
No 441
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.06 E-value=2e+02 Score=37.31 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 001297 652 QNLEREIQEKRRQMRILEQRIIENG 676 (1105)
Q Consensus 652 q~L~~qlrdKeeei~~L~qki~~s~ 676 (1105)
+=|..++...+.+++..++++...+
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666664443
No 442
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.73 E-value=17 Score=32.44 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHH
Q 001297 758 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 794 (1105)
Q Consensus 758 ~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~ 794 (1105)
.+..+.+|+.++-.|..+|++|++....|.+....+.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455688999999999999999999888888777665
No 443
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.33 E-value=1.8e+02 Score=32.33 Aligned_cols=21 Identities=33% Similarity=0.903 Sum_probs=14.2
Q ss_pred cccchhhhhcC----CCCCCCcccc
Q 001297 1077 FCLCKSCSLAC----SECPICRTKI 1097 (1105)
Q Consensus 1077 ~~~C~~C~~~~----~~CPiCR~~i 1097 (1105)
|-.|..|.... +.||.|...=
T Consensus 194 MK~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 194 MKTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred cchhHhHHHHHhcCCCCCccccccc
Confidence 44788885443 6699998653
No 444
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=65.30 E-value=0.74 Score=42.04 Aligned_cols=38 Identities=26% Similarity=0.833 Sum_probs=33.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccce
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDR 1100 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~ 1100 (1105)
..|.|| +..|-.|-.|+ |..|+..-..|.+|.+.|...
T Consensus 55 ~kC~iC----k~~vHQ~GshY--C~tCAY~KgiCAMCGKki~nT 92 (100)
T KOG3476|consen 55 AKCRIC----KQLVHQPGSHY--CQTCAYKKGICAMCGKKILNT 92 (100)
T ss_pred chhHHH----HHHhcCCcchh--HhHhhhhhhHHHHhhhHhhcc
Confidence 489999 88888898895 999999999999999988763
No 445
>PRK04406 hypothetical protein; Provisional
Probab=65.01 E-value=24 Score=32.08 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 001297 729 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 792 (1105)
Q Consensus 729 ~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~ 792 (1105)
.++..|.+|+.++ +-.+..+.+|+.++-.|..+|+.+++....|.+....
T Consensus 8 ~le~Ri~~LE~~l--------------AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQL--------------AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777776 3456677889999999999999999988888665443
No 446
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.97 E-value=63 Score=29.62 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 824 EVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
++..+...+..|+.|....|.+...|...+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555556666666666677776544
No 447
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=64.90 E-value=2.3 Score=35.23 Aligned_cols=38 Identities=29% Similarity=0.695 Sum_probs=15.5
Q ss_pred cccccccc--cceEEe--CCCCcccchhhhhcC-----CCCCCCcccc
Q 001297 1059 CKVCFESP--TAAILL--PCRHFCLCKSCSLAC-----SECPICRTKI 1097 (1105)
Q Consensus 1059 C~IC~~~~--~~~vl~--PCgH~~~C~~C~~~~-----~~CPiCR~~i 1097 (1105)
|++|.+.. ++.-|. +||+. +|..|.... ..||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45565532 333444 56777 899995443 4599999874
No 448
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.50 E-value=54 Score=39.71 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+.+..|.+.+++=..+++.+..+++.|.+||++|..+.+.+-.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45566666555555555556666666666666655554444433
No 449
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=64.35 E-value=4e+02 Score=34.06 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=20.8
Q ss_pred cCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhH
Q 001297 598 SGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSS 630 (1105)
Q Consensus 598 ~~~~~~~~~~~~d~~d~l~eq~k~l~~e~a~~~ 630 (1105)
...|.++-+....-++.|+++.+.+..-+|...
T Consensus 773 PeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~s 805 (1480)
T COG3096 773 PEIPLFGRAAREQRLESLHAERDVLSERHATLS 805 (1480)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444557889988888887777643
No 450
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.13 E-value=2.5e+02 Score=31.54 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=23.3
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhh
Q 001297 820 NLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSD 865 (1105)
Q Consensus 820 ~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq 865 (1105)
+-+.+.+.|-..|...-.++..++..+..-...+.-....+++++.
T Consensus 206 ~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 206 NKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666555555554444433333334444444
No 451
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.95 E-value=2.3e+02 Score=33.55 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=18.1
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001297 697 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 739 (1105)
Q Consensus 697 ~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~ 739 (1105)
.|++...-+|+...+.....+++++++..-+.++..+|..+-.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333333
No 452
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=63.76 E-value=29 Score=33.75 Aligned_cols=52 Identities=29% Similarity=0.286 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 784 VQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 784 ~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
..|.+....|+.++..+.+ ++..|-..|..|..+|++|+-|...+++.+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~--------------~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLE--------------ELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555 344444455555556666666655555444433
No 453
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.70 E-value=93 Score=35.09 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 716 LQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
-+.+|++-+.||.+|..+|.+.+++-
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888888877775
No 454
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=63.60 E-value=7.7 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=23.8
Q ss_pred Ccccccccccccc--cceEEeCCCCcccchhhhh
Q 001297 1054 PNSHMCKVCFESP--TAAILLPCRHFCLCKSCSL 1085 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~--~~~vl~PCgH~~~C~~C~~ 1085 (1105)
.....|.+|...- ...++.||||. +...|..
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 3456899998843 55777899998 8888864
No 455
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=63.59 E-value=2.4e+02 Score=31.30 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 767 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~ 767 (1105)
|+.-|.+.-.+|.+..=-....+.+..++-.-|=+-...|..|-.+++.++... ..++.--+
T Consensus 76 LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~q------------------krLdq~L~ 137 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQ------------------KRLDQELE 137 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHH------------------HHHHHHHH
Confidence 334444444444433333333344666666666666666666666666666554 11111122
Q ss_pred HHHhhHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 768 KVQSQETENEKLKLEHVQLSEE------NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 768 ~l~~q~~E~e~lk~e~~~L~Ee------~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
-+..|..|+|++--......+. ......|.++...=+-.-....+.+..-|+.++++++...
T Consensus 138 ~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~ 205 (254)
T KOG2196|consen 138 FILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMS 205 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 4455666677765555555554 3334444444443333344445556666777777776654
No 456
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.45 E-value=1.5e+02 Score=31.86 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHH-HHhHHHHHH--HHhhhhhHHHHHHHHHHHHHHHH
Q 001297 684 SMVDMQQTVTRLMSQCNEKAFELEIK-SADNRILQE--QLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 684 ~~~e~~q~~~~L~~~l~e~~~el~~k-~ae~~~lqe--qL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++.-++..|.+|+.-.+.+.--++.. ..++.+.+. .+...+.++.+|+.+|..|+++.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34456777777766555443333322 112222211 23344555555556655555554
No 457
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.22 E-value=2.2e+02 Score=34.81 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-cchhHHHHHH
Q 001297 613 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMA-NASMVDMQQT 691 (1105)
Q Consensus 613 d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~-~~~~~e~~q~ 691 (1105)
++++-|..++....-..+....+++|.. ++-.|.-+.|.+++++..+....|-.|+-++.-.+...-+ ..+-.+|..+
T Consensus 341 ~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~K 419 (508)
T KOG3091|consen 341 QRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAK 419 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHH
Confidence 3444444443333333333334445555 5556666778888888888888887777777443332221 1123344444
Q ss_pred HHHHHHhhhhh
Q 001297 692 VTRLMSQCNEK 702 (1105)
Q Consensus 692 ~~~L~~~l~e~ 702 (1105)
+..|+++++..
T Consensus 420 ldtll~~ln~P 430 (508)
T KOG3091|consen 420 LDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHhcCh
Confidence 55444444433
No 458
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.17 E-value=3.4 Score=45.65 Aligned_cols=44 Identities=25% Similarity=0.625 Sum_probs=32.4
Q ss_pred ccccccccccccc----------ceEEeCCCCcccchhhhhc------CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPT----------AAILLPCRHFCLCKSCSLA------CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~----------~~vl~PCgH~~~C~~C~~~------~~~CPiCR~~i~~ 1099 (1105)
++..|.||-.+-- ++.-+-|+|. |-+.|... .+.||.|...|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 5668999976433 3345789998 99999543 2569999998764
No 459
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.03 E-value=71 Score=34.72 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 705 ELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 705 el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|++..+++..|-++|...++++.+.+.+|.+++-..
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888888877776665
No 460
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.02 E-value=4.9e+02 Score=34.61 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhc
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQS 640 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~~ 640 (1105)
+..||+-.+.|-.-++.+++.|.+|-+..
T Consensus 183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~ 211 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTTKTEKLNRLEDEI 211 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456666666777777777776555444
No 461
>PHA00729 NTP-binding motif containing protein
Probab=62.81 E-value=5.8 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=24.6
Q ss_pred hhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 161 ~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++.++..+..|--..|+.+|.+|+||||-..
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 35566777665555689999999999999765
No 462
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.73 E-value=47 Score=38.89 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
++..+++..|.++......++++ +..|...+..|..-+.+.+..+..+...|-.+
T Consensus 259 ~~~~~e~~~l~~~~~~~~~kl~r-------A~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 259 EEAQKEKQELEEEIEETERKLER-------AEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc-------HHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 44444444444444444443333 44466666667766776777776666666665
No 463
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=61.77 E-value=2.3e+02 Score=30.49 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.+.|..+++..+.+....+.++..+.++|
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555
No 464
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.73 E-value=29 Score=31.34 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q 001297 730 LQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 793 (1105)
Q Consensus 730 l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L 793 (1105)
++..|.+|+.++ +-.+..+.+|+.++-.|..+|+.+.+....|.+....+
T Consensus 6 ~e~Ri~~LE~~l--------------afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRL--------------AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666 33456678899999999999999998888887655443
No 465
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=61.71 E-value=87 Score=38.41 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=43.2
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHH
Q 001297 697 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETEN 776 (1105)
Q Consensus 697 ~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~ 776 (1105)
.+++.....|+....+...+.++|..+...+..|+.++..-+.---+. ...+-|++..++..|.+|.+||
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~Q----------Ls~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQ----------LSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555666666666666666666655544322000 1335567777888888888888
Q ss_pred HHHHH
Q 001297 777 EKLKL 781 (1105)
Q Consensus 777 e~lk~ 781 (1105)
+.||.
T Consensus 511 ~~LK~ 515 (518)
T PF10212_consen 511 QTLKL 515 (518)
T ss_pred HHHhh
Confidence 88873
No 466
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=61.49 E-value=3.2 Score=54.39 Aligned_cols=44 Identities=36% Similarity=0.861 Sum_probs=33.5
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhhhc--------------CCCCCCCcccccce
Q 001297 1056 SHMCKVCFESP---TAAILLPCRHFCLCKSCSLA--------------CSECPICRTKISDR 1100 (1105)
Q Consensus 1056 ~~~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~--------------~~~CPiCR~~i~~~ 1100 (1105)
+..|.||+... ..++-+-|+|. |--.|..+ .-.||+|..+|.+.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34899999854 45677899999 88888322 24599999999874
No 467
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=61.26 E-value=4.3e+02 Score=34.54 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001297 719 QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ 798 (1105)
Q Consensus 719 qL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~ 798 (1105)
|.+....+...++..+..+...+.++.-..... +.+ .-......+++|...++++.+....+.+....+..++.
T Consensus 16 ~~~~~~~~~~~~~~~l~~lq~~~~~~~~~~~~~---a~~---~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~~~dd~ 89 (835)
T COG3264 16 RRELLTAESAQLEAALQLLQEAVNSKRQEEAEP---AAE---EAELQAELIQQELAINDQLSQALNQQTERLNALASDDR 89 (835)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhccccccc---chh---hcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 334555666666777777777764433211110 000 00001114445555556665555555555555555444
Q ss_pred HHHH
Q 001297 799 KLAE 802 (1105)
Q Consensus 799 kL~~ 802 (1105)
++.+
T Consensus 90 ~l~~ 93 (835)
T COG3264 90 QLAN 93 (835)
T ss_pred HHHH
Confidence 4444
No 468
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.26 E-value=5.1 Score=45.97 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++..++.+ .+.|+..|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555553 4678889999999999873
No 469
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=61.06 E-value=2 Score=46.42 Aligned_cols=38 Identities=29% Similarity=0.760 Sum_probs=27.0
Q ss_pred cccc--ccccccceEEeC-CCCcccchhhhhcC-----CCCC--CCccc
Q 001297 1058 MCKV--CFESPTAAILLP-CRHFCLCKSCSLAC-----SECP--ICRTK 1096 (1105)
Q Consensus 1058 ~C~I--C~~~~~~~vl~P-CgH~~~C~~C~~~~-----~~CP--iCR~~ 1096 (1105)
.|.. -+...+-.++-| |.|. +|..|..+. ..|| .|.+-
T Consensus 15 vCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 15 VCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred ccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4553 334445666778 9999 999997664 5699 89763
No 470
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.01 E-value=1.2e+02 Score=32.55 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
+|..|+.++..|..+...+..+.+.+.. ........+.|...++|..|..+|.+|..+|+
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek------~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEK------REEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555544444444432 22223455667778888899889998888765
No 471
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=60.97 E-value=4.9 Score=46.54 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++..++.+ ...|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555655 3567777999999998774
No 472
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.93 E-value=5.6 Score=46.86 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 151 ~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..|..+|+.+...+. ......+|..|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3568889987655443 244456799999999999987
No 473
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=60.79 E-value=3.8e+02 Score=32.55 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 001297 713 NRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 790 (1105)
Q Consensus 713 ~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~ 790 (1105)
.+..|..|++...+...|+-++...|---+..-|.-.+-++-....-...-|+...|.++.+|+++|++.+-.|....
T Consensus 399 la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat 476 (527)
T PF15066_consen 399 LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKAT 476 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444332222200000000011112334555677777788888877776665433
No 474
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.66 E-value=2.2e+02 Score=29.78 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEE 803 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e 803 (1105)
|...|...+..|.+++..|..+...+.+.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555566666666666666665555553
No 475
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=60.64 E-value=2.2 Score=48.50 Aligned_cols=45 Identities=29% Similarity=0.617 Sum_probs=33.8
Q ss_pred cccccccccccce-EEeCCCCcccchhhhh----cCCCCCCCcccccceee
Q 001297 1057 HMCKVCFESPTAA-ILLPCRHFCLCKSCSL----ACSECPICRTKISDRLF 1102 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~-vl~PCgH~~~C~~C~~----~~~~CPiCR~~i~~~i~ 1102 (1105)
-.|.+|..=.+++ .+.-|-|- ||..|.. .+.-||.|...|.+..+
T Consensus 16 itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred eehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCccc
Confidence 3799997655443 34569999 9999943 35679999999988754
No 476
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.50 E-value=40 Score=29.90 Aligned_cols=48 Identities=27% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 694 RLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 694 ~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|...++.....++...++|..|.+++.....+...|..+++..++++
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666777788999999999999999999999999999998
No 477
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.34 E-value=1.6e+02 Score=33.28 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=25.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLS-------EENSGLHVQNQKLAE 802 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~-------Ee~~~L~~e~~kL~~ 802 (1105)
..|.+++++++.|+|+.++...+|. +|+.+|+.+++++=+
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777666664 555666665555544
No 478
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=60.28 E-value=4.3 Score=43.30 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|...+..|.+..++-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444445678899999999999999763
No 479
>PF13479 AAA_24: AAA domain
Probab=60.25 E-value=4.4 Score=43.90 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=17.0
Q ss_pred CeEEEEeccCCCCCccccCC
Q 001297 174 NGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G 193 (1105)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998754
No 480
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.22 E-value=3.6 Score=39.92 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEeccCCCCCcccc
Q 001297 177 VFAYGVTSSGKTHTM 191 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm 191 (1105)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999875
No 481
>PRK12704 phosphodiesterase; Provisional
Probab=60.15 E-value=3.3e+02 Score=33.87 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 695 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 695 L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
-..+|+.+.-.|+.+..+....++.|.....++.+++++++.+..++...||
T Consensus 94 Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555666666666666666666666666666665
No 482
>PRK11519 tyrosine kinase; Provisional
Probab=59.92 E-value=3.5e+02 Score=35.10 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001297 651 IQNLEREIQEKRRQMRILEQRIIENGE 677 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki~~s~~ 677 (1105)
.+=|..++.+.+.+++..++++...+.
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655443
No 483
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.68 E-value=3.9 Score=43.96 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.0
Q ss_pred EEEEeccCCCCCccccC
Q 001297 176 TVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~ 192 (1105)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47889999999999974
No 484
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.36 E-value=66 Score=28.56 Aligned_cols=53 Identities=23% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhh
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 829 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~ 829 (1105)
+.|-.-...|.++|..|..+...+..|-..-.+.-..|...+++++.++..++
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44444444444444444444444444444444455566666777766665554
No 485
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=59.34 E-value=6.5 Score=32.64 Aligned_cols=36 Identities=25% Similarity=0.929 Sum_probs=25.9
Q ss_pred ccccccc--cccceEEeCCC-----Ccccchhhhhc------CCCCCCCc
Q 001297 1058 MCKVCFE--SPTAAILLPCR-----HFCLCKSCSLA------CSECPICR 1094 (1105)
Q Consensus 1058 ~C~IC~~--~~~~~vl~PCg-----H~~~C~~C~~~------~~~CPiCR 1094 (1105)
.|.||++ .+.+.++.||. |+ +=..|... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899996 66788899996 55 66778322 24699995
No 486
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=59.21 E-value=3.5e+02 Score=31.70 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001297 649 VQIQNLEREIQEKRRQMRILEQRIIENGE 677 (1105)
Q Consensus 649 ~Q~q~L~~qlrdKeeei~~L~qki~~s~~ 677 (1105)
...+=|..++...+.++...++++.....
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888877765544
No 487
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.13 E-value=99 Score=28.05 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHH
Q 001297 654 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 733 (1105)
Q Consensus 654 L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~k 733 (1105)
|.+.|++|.++|+.|+.--..... ....+...|.+|++...+ +..++......+..+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk------~el~~~~~IKKLr~~~~e--------------~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSK------KELKLNNTIKKLRAKIKE--------------LEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 567899999999999954421111 111345566666665553 233333444444455555
Q ss_pred HHHHHHHH
Q 001297 734 VNLLEQQL 741 (1105)
Q Consensus 734 l~~lk~~l 741 (1105)
++.|++.+
T Consensus 63 ~~~l~~~l 70 (74)
T PF12329_consen 63 LESLEERL 70 (74)
T ss_pred HHHHHHHh
Confidence 55555544
No 488
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=58.99 E-value=3.2 Score=38.36 Aligned_cols=34 Identities=26% Similarity=0.863 Sum_probs=27.5
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcc
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRT 1095 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~--~~CPiCR~ 1095 (1105)
-+|+|| +-.+-||.-.-+|+.|++.. ..|.||..
T Consensus 28 gkC~IC-----DS~VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVIC-----DSYVRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Cccccc-----ccccccceeeeeehhcCCccccCceEEecC
Confidence 379999 55567999999999998765 55999987
No 489
>PRK00736 hypothetical protein; Provisional
Probab=58.94 E-value=23 Score=31.56 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q 001297 757 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 793 (1105)
Q Consensus 757 ~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L 793 (1105)
-.+..+.+|+.++-.|..+|+.+.+....|.+....+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456668899999999999999998888887755443
No 490
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=58.94 E-value=5.8 Score=39.09 Aligned_cols=40 Identities=23% Similarity=0.709 Sum_probs=24.1
Q ss_pred cccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001297 1055 NSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1095 (1105)
Q Consensus 1055 ~~~~C~IC~~~~-----~~~vl~PCgH~~~C~~C~~~~~-----~CPiCR~ 1095 (1105)
+...|.+|.... ...+-.-|+|. +|..|..... .|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 566899997743 34555567776 7777754431 2777765
No 491
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.73 E-value=7 Score=44.87 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=26.4
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
-.||.+.+ ++++... +...+-.|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 34777764 3444332 2222234443458889999999999874
No 492
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=58.55 E-value=6.9 Score=44.71 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.1
Q ss_pred cCC-CeEEEEeccCCCCCccccC
Q 001297 171 EGV-NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~-n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4567779999999999874
No 493
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.53 E-value=3e+02 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.-.|.-|+...+...-++++.+--+.+|=-||+.++-|..++-..|..||+++
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666666666888899999999999999999999999988
No 494
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=58.43 E-value=3.4e+02 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001297 904 LQARKQREAALEAAL 918 (1105)
Q Consensus 904 ~~a~~er~~aLE~el 918 (1105)
+...+..+.-||+++
T Consensus 192 le~qk~tv~~Leaev 206 (426)
T KOG2008|consen 192 LEQQKKTVDDLEAEV 206 (426)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 495
>PRK00295 hypothetical protein; Provisional
Probab=58.38 E-value=35 Score=30.47 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhH
Q 001297 730 LQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 793 (1105)
Q Consensus 730 l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L 793 (1105)
++..|.+|+.++ +-.+..+.+|+.++-.|..+|+.+++....|.+....+
T Consensus 3 ~e~Ri~~LE~kl--------------a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQ--------------AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666665 33456678899999999999999998888886655544
No 496
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.04 E-value=34 Score=29.82 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
++..++.|+.....|..+|..|..++..|..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666555
No 497
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=57.94 E-value=1.1e+02 Score=33.07 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 895 LDPDDLKLELQARKQREAALEAALAEKEFL 924 (1105)
Q Consensus 895 ~~~~~~k~e~~a~~er~~aLE~el~~k~~~ 924 (1105)
.+...+++.+.++.++|-+||+++.+.++.
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqk 86 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQK 86 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999888765
No 498
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=57.83 E-value=13 Score=47.96 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhh-ccCCCceEEEEEeeeeee
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII-QDTPGREFLLRVSYLEIY 230 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i-~~~~~~~~~v~vS~lEIY 230 (1105)
.+..+.+|.|+.|.| +||||||-+-| +| ++..|+..- ....+.-+.|+||=+---
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 345678999999888 99999998853 44 556666542 122334566777665443
No 499
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.66 E-value=1.8e+02 Score=28.38 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHH
Q 001297 746 GDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV 825 (1105)
Q Consensus 746 e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev 825 (1105)
|+....-.+..+....+..+...+..-+..++.|.+++..|...+..|..++.-+.. ++
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~q---------------------r~ 60 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQ---------------------RI 60 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------HH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 826 TKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 826 ~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
+.|++.-..+...++..|...-+.+..+
T Consensus 61 ~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 61 AELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.64 E-value=4e+02 Score=31.83 Aligned_cols=221 Identities=18% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc-------CCCCCCCCCCCcHHHHH-HHHHHHHhhHHHHHHH----HH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNG-------DKSAGSSGQGTSDEYVD-ELRKKVQSQETENEKL----KL 781 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e-------~~~~~~~~~~~~ee~~~-el~~~l~~q~~E~e~l----k~ 781 (1105)
..|+.++.....++..|.-+++.+|-+-....| +.-.......+-||+|. .|-++++.=..|-+-+ +.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~ 125 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEV 125 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhh
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHhh-
Q 001297 782 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE-------LLAARESMHSRGAAM- 853 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E-------l~~~k~~~~~~e~qi- 853 (1105)
|..-|+-...+-..+++.---+-.-..+..--+ .|+||+...++|+.+ |+-++.+.-+.+..+
T Consensus 126 eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef---------~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlE 196 (552)
T KOG2129|consen 126 EEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEF---------FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLE 196 (552)
T ss_pred hhhhccCchhHHHHHHHhhhccHHHHHHHHHHH---------HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHH
Q ss_pred ----hhhhc---------chhhhhhhhhhhcccccccccccccCccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001297 854 ----QTVNG---------VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAE 920 (1105)
Q Consensus 854 ----q~v~~---------~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~~~~k~e~~a~~er~~aLE~el~~ 920 (1105)
-.||. ....||| .|.|+.... .......-+..+.--.+..+..-.+.-|.+|+.+
T Consensus 197 QEqEalvN~LwKrmdkLe~ekr~Lq---~KlDqpvs~---------p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveR 264 (552)
T KOG2129|consen 197 QEQEALVNSLWKRMDKLEQEKRYLQ---KKLDQPVST---------PSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVER 264 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcccC---------CCchhhhhcCccccCchHHHHHHHHHHHHHHHHH
Q ss_pred HH----HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001297 921 KE----FLEDEYRKKVEESKRREEALENDLANMWVLVAK 955 (1105)
Q Consensus 921 k~----~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~k 955 (1105)
.+ .++.+.+-|+..+.+.+.....|++.++..+..
T Consensus 265 lrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 265 LRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Done!