Query 001297
Match_columns 1105
No_of_seqs 764 out of 3406
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 7.8E-86 2.7E-90 754.4 26.1 342 97-455 8-361 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 2.2E-85 7.6E-90 750.9 23.4 340 97-461 2-351 (369)
3 3b6u_A Kinesin-like protein KI 100.0 8E-85 2.7E-89 746.3 27.4 340 96-447 17-372 (372)
4 3bfn_A Kinesin-like protein KI 100.0 6.3E-85 2.1E-89 749.2 24.9 346 95-458 16-373 (388)
5 2vvg_A Kinesin-2; motor protei 100.0 1.7E-84 5.7E-89 739.6 27.6 327 99-438 3-346 (350)
6 1t5c_A CENP-E protein, centrom 100.0 1.8E-84 6E-89 739.8 27.4 326 99-439 3-340 (349)
7 1goj_A Kinesin, kinesin heavy 100.0 3.7E-84 1.3E-88 738.8 29.2 330 98-440 4-343 (355)
8 2owm_A Nckin3-434, related to 100.0 3.6E-84 1.2E-88 756.9 28.2 328 96-436 34-422 (443)
9 2zfi_A Kinesin-like protein KI 100.0 2.8E-83 9.5E-88 734.9 24.3 326 99-435 3-362 (366)
10 3lre_A Kinesin-like protein KI 100.0 1E-82 3.5E-87 727.5 26.9 320 96-427 6-355 (355)
11 1bg2_A Kinesin; motor protein, 100.0 7.7E-83 2.7E-87 720.5 25.4 312 98-427 5-325 (325)
12 1x88_A Kinesin-like protein KI 100.0 5.1E-83 1.7E-87 731.0 22.4 326 97-435 5-358 (359)
13 4a14_A Kinesin, kinesin-like p 100.0 7.2E-82 2.5E-86 718.8 26.4 318 94-425 5-344 (344)
14 2wbe_C Bipolar kinesin KRP-130 100.0 3.1E-82 1.1E-86 727.3 22.9 330 96-438 19-372 (373)
15 3nwn_A Kinesin-like protein KI 100.0 9.6E-82 3.3E-86 719.2 23.9 317 96-427 20-359 (359)
16 3gbj_A KIF13B protein; kinesin 100.0 1.7E-81 5.7E-86 717.3 25.3 316 101-427 2-350 (354)
17 2nr8_A Kinesin-like protein KI 100.0 1.6E-81 5.3E-86 717.2 23.3 319 94-427 17-358 (358)
18 2h58_A Kinesin-like protein KI 100.0 6.9E-81 2.4E-85 705.9 25.7 316 98-428 2-329 (330)
19 3u06_A Protein claret segregat 100.0 6.4E-80 2.2E-84 715.1 26.5 326 97-438 56-394 (412)
20 2rep_A Kinesin-like protein KI 100.0 5.4E-80 1.8E-84 708.0 24.7 318 95-427 17-376 (376)
21 3t0q_A AGR253WP; kinesin, alph 100.0 5.5E-80 1.9E-84 704.1 23.4 318 98-431 3-348 (349)
22 2heh_A KIF2C protein; kinesin, 100.0 6.4E-80 2.2E-84 707.5 24.0 312 99-430 50-385 (387)
23 1ry6_A Internal kinesin; kines 100.0 9.4E-80 3.2E-84 703.0 23.6 319 101-437 1-341 (360)
24 1f9v_A Kinesin-like protein KA 100.0 7E-80 2.4E-84 702.1 22.4 318 99-432 2-346 (347)
25 1v8k_A Kinesin-like protein KI 100.0 1E-79 3.5E-84 709.7 23.3 314 99-432 70-407 (410)
26 4etp_A Kinesin-like protein KA 100.0 2.4E-78 8.4E-83 702.1 23.0 320 97-432 56-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 1.5E-77 5.2E-82 681.0 26.1 308 95-431 17-339 (344)
28 4h1g_A Maltose binding protein 100.0 3.5E-72 1.2E-76 698.9 23.8 316 97-428 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 3.4E-31 1.2E-35 247.1 5.2 99 352-450 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3E-28 1E-32 234.8 7.8 98 356-453 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.7E-24 5.7E-29 233.5 7.4 261 98-431 22-293 (298)
32 2ea5_A Cell growth regulator w 99.2 7.3E-12 2.5E-16 109.4 4.5 51 1055-1105 14-64 (68)
33 2yho_A E3 ubiquitin-protein li 99.2 2.9E-11 9.8E-16 108.7 6.0 47 1058-1104 20-66 (79)
34 2vje_B MDM4 protein; proto-onc 99.1 1.9E-11 6.4E-16 105.1 1.2 50 1055-1104 6-61 (63)
35 4ic3_A E3 ubiquitin-protein li 99.1 1.4E-10 4.8E-15 102.8 6.0 47 1058-1104 26-72 (74)
36 2ecg_A Baculoviral IAP repeat- 99.0 1.4E-10 4.7E-15 103.1 4.3 47 1058-1104 27-73 (75)
37 2vje_A E3 ubiquitin-protein li 99.0 5.7E-11 2E-15 102.4 0.6 50 1055-1104 7-62 (64)
38 3t6p_A Baculoviral IAP repeat- 98.7 4.4E-09 1.5E-13 119.6 4.4 47 1058-1104 297-343 (345)
39 1c1g_A Tropomyosin; contractIl 98.4 0.0024 8.3E-08 68.2 37.5 14 613-626 2-15 (284)
40 4ayc_A E3 ubiquitin-protein li 98.3 2E-07 6.7E-12 92.5 2.5 44 1057-1101 54-101 (138)
41 1c1g_A Tropomyosin; contractIl 98.3 0.0024 8.3E-08 68.2 35.0 24 650-673 7-30 (284)
42 1i84_S Smooth muscle myosin he 98.3 9.6E-07 3.3E-11 115.9 9.5 36 155-191 150-186 (1184)
43 2ecn_A Ring finger protein 141 98.2 4E-07 1.4E-11 79.2 1.6 49 1054-1104 13-65 (70)
44 1i84_S Smooth muscle myosin he 98.2 3E-06 1E-10 111.2 10.4 20 284-303 236-255 (1184)
45 1chc_A Equine herpes virus-1 r 98.2 6.8E-07 2.3E-11 77.2 2.9 48 1056-1104 5-57 (68)
46 2d8t_A Dactylidin, ring finger 98.2 9.5E-07 3.3E-11 77.1 3.6 44 1055-1099 14-61 (71)
47 2ysl_A Tripartite motif-contai 98.1 1.1E-06 3.8E-11 76.9 3.3 45 1054-1099 18-69 (73)
48 2csy_A Zinc finger protein 183 98.1 1.1E-06 3.8E-11 78.7 3.2 46 1054-1100 13-62 (81)
49 2xeu_A Ring finger protein 4; 98.0 1.1E-06 3.9E-11 74.5 1.9 48 1056-1104 3-63 (64)
50 2y1n_A E3 ubiquitin-protein li 98.0 2E-06 6.8E-11 98.4 4.3 47 1057-1104 333-384 (389)
51 2ea6_A Ring finger protein 4; 98.0 1.3E-06 4.4E-11 75.3 1.7 45 1054-1099 13-68 (69)
52 2ecm_A Ring finger and CHY zin 98.0 2.1E-06 7.2E-11 70.7 2.9 43 1055-1098 4-54 (55)
53 2egp_A Tripartite motif-contai 98.0 2.3E-06 8E-11 75.9 2.9 45 1054-1099 10-65 (79)
54 3ng2_A RNF4, snurf, ring finge 98.0 1.4E-06 4.7E-11 75.8 1.3 49 1055-1104 9-70 (71)
55 2ct2_A Tripartite motif protei 98.0 2.6E-06 8.9E-11 77.1 3.1 46 1053-1099 12-68 (88)
56 2ecw_A Tripartite motif-contai 98.0 3.7E-06 1.3E-10 75.3 3.9 44 1055-1099 18-71 (85)
57 2djb_A Polycomb group ring fin 98.0 3.6E-06 1.2E-10 73.6 3.4 47 1054-1101 13-64 (72)
58 2kiz_A E3 ubiquitin-protein li 97.9 3.9E-06 1.3E-10 72.6 3.2 49 1054-1103 12-67 (69)
59 1bor_A Transcription factor PM 97.9 2.9E-06 9.9E-11 70.8 2.1 44 1055-1099 5-49 (56)
60 3fl2_A E3 ubiquitin-protein li 97.9 6.6E-06 2.3E-10 79.8 5.0 41 1058-1099 54-99 (124)
61 2ecv_A Tripartite motif-contai 97.9 4.1E-06 1.4E-10 75.1 3.2 44 1055-1099 18-71 (85)
62 1e4u_A Transcriptional repress 97.9 2.3E-06 8E-11 76.5 1.4 50 1054-1104 9-67 (78)
63 1iym_A EL5; ring-H2 finger, ub 97.9 6.3E-06 2.2E-10 67.9 3.6 43 1055-1098 4-54 (55)
64 2ecy_A TNF receptor-associated 97.9 5E-06 1.7E-10 71.4 2.8 45 1054-1099 13-62 (66)
65 1jm7_A BRCA1, breast cancer ty 97.9 6.5E-06 2.2E-10 78.0 3.7 41 1058-1099 23-70 (112)
66 2l0b_A E3 ubiquitin-protein li 97.9 6.2E-06 2.1E-10 75.7 3.3 45 1055-1100 39-90 (91)
67 2yur_A Retinoblastoma-binding 97.9 9.1E-06 3.1E-10 71.6 4.2 46 1053-1099 12-64 (74)
68 2ep4_A Ring finger protein 24; 97.8 6.1E-06 2.1E-10 72.4 2.9 48 1054-1102 13-67 (74)
69 2ect_A Ring finger protein 126 97.8 1E-05 3.5E-10 71.7 3.9 45 1055-1100 14-65 (78)
70 1x4j_A Ring finger protein 38; 97.8 5.7E-06 1.9E-10 72.9 2.2 44 1055-1099 22-72 (75)
71 3ztg_A E3 ubiquitin-protein li 97.8 8E-06 2.7E-10 74.8 2.7 44 1053-1097 10-60 (92)
72 1g25_A CDK-activating kinase a 97.8 5.5E-06 1.9E-10 70.9 1.3 42 1057-1099 4-55 (65)
73 3l11_A E3 ubiquitin-protein li 97.7 1.1E-05 3.6E-10 77.3 2.7 41 1058-1099 17-62 (115)
74 3lrq_A E3 ubiquitin-protein li 97.7 1.5E-05 5.1E-10 74.5 3.7 41 1058-1099 24-70 (100)
75 1z6u_A NP95-like ring finger p 97.7 1.7E-05 5.9E-10 79.7 4.0 43 1057-1100 79-126 (150)
76 1t1h_A Gspef-atpub14, armadill 97.7 2E-05 6.7E-10 69.9 3.5 45 1054-1099 6-55 (78)
77 2y43_A E3 ubiquitin-protein li 97.7 1.2E-05 4.3E-10 74.6 2.0 41 1058-1099 24-69 (99)
78 2ckl_B Ubiquitin ligase protei 97.7 1.1E-05 3.8E-10 82.1 1.8 42 1057-1099 55-102 (165)
79 2ckl_A Polycomb group ring fin 97.6 1.5E-05 5.3E-10 75.3 2.5 43 1056-1099 15-62 (108)
80 1jm7_B BARD1, BRCA1-associated 97.6 2.8E-05 9.7E-10 74.6 3.6 40 1058-1098 24-66 (117)
81 2ysj_A Tripartite motif-contai 97.6 2.8E-05 9.5E-10 66.0 2.9 39 1054-1093 18-63 (63)
82 2ecj_A Tripartite motif-contai 97.6 2.1E-05 7.1E-10 65.4 2.0 38 1055-1093 14-58 (58)
83 3hct_A TNF receptor-associated 97.5 4.8E-05 1.7E-09 73.1 3.5 45 1054-1099 16-65 (118)
84 1v87_A Deltex protein 2; ring- 97.4 2.7E-05 9.3E-10 74.1 0.9 44 1056-1100 25-95 (114)
85 3na7_A HP0958; flagellar bioge 97.4 0.0085 2.9E-07 65.3 20.6 50 897-946 92-141 (256)
86 1wt6_A Myotonin-protein kinase 97.4 0.00024 8.2E-09 62.4 5.9 50 906-962 11-70 (81)
87 1rmd_A RAG1; V(D)J recombinati 97.3 8.6E-05 2.9E-09 71.0 3.0 41 1058-1099 25-70 (116)
88 2ecl_A Ring-box protein 2; RNF 97.2 0.00014 4.7E-09 65.2 3.0 42 1057-1099 16-76 (81)
89 2c2l_A CHIP, carboxy terminus 97.2 0.00017 5.8E-09 78.9 4.3 46 1053-1099 205-255 (281)
90 4ap4_A E3 ubiquitin ligase RNF 97.2 8.2E-05 2.8E-09 72.2 1.2 44 1055-1099 6-60 (133)
91 2kre_A Ubiquitin conjugation f 97.1 0.00021 7E-09 66.9 3.3 45 1054-1099 27-75 (100)
92 3knv_A TNF receptor-associated 97.1 5.7E-05 1.9E-09 75.1 -0.8 43 1054-1097 29-76 (141)
93 1wgm_A Ubiquitin conjugation f 97.1 0.0002 6.8E-09 66.8 2.7 45 1054-1099 20-69 (98)
94 2kr4_A Ubiquitin conjugation f 97.1 0.00026 8.8E-09 64.1 3.4 45 1054-1099 12-60 (85)
95 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00018 6.2E-09 69.7 2.4 49 1055-1104 71-132 (133)
96 2f42_A STIP1 homology and U-bo 97.0 0.00054 1.8E-08 70.6 5.5 49 1050-1099 100-153 (179)
97 3dpl_R Ring-box protein 1; ubi 96.8 0.0006 2E-08 64.4 3.4 41 1057-1098 38-100 (106)
98 3hcs_A TNF receptor-associated 96.8 0.00059 2E-08 69.6 3.6 46 1053-1099 15-65 (170)
99 3vkg_A Dynein heavy chain, cyt 96.8 0.18 6.2E-06 71.4 28.6 68 771-838 2039-2106(3245)
100 4a0k_B E3 ubiquitin-protein li 96.4 0.00058 2E-08 65.6 0.4 41 1057-1098 49-111 (117)
101 3na7_A HP0958; flagellar bioge 96.4 0.34 1.2E-05 52.6 22.1 50 692-741 34-83 (256)
102 2yu4_A E3 SUMO-protein ligase 96.2 0.002 6.8E-08 59.3 2.8 41 1055-1096 6-59 (94)
103 2dfs_A Myosin-5A; myosin-V, in 96.1 0.03 1E-06 72.5 14.2 74 769-845 972-1045(1080)
104 1wim_A KIAA0161 protein; ring 95.9 0.0016 5.5E-08 59.7 0.4 41 1055-1096 4-61 (94)
105 2v71_A Nuclear distribution pr 95.7 0.65 2.2E-05 47.8 19.1 38 603-640 3-40 (189)
106 2d8s_A Cellular modulator of i 95.7 0.0073 2.5E-07 54.0 4.0 45 1055-1100 14-71 (80)
107 3htk_C E3 SUMO-protein ligase 95.6 0.0036 1.2E-07 67.8 1.9 44 1055-1099 180-232 (267)
108 2dfs_A Myosin-5A; myosin-V, in 95.5 0.14 4.8E-06 66.4 16.5 35 156-191 138-173 (1080)
109 2v71_A Nuclear distribution pr 95.4 1.5 5.1E-05 45.2 20.5 62 775-843 96-157 (189)
110 3vk6_A E3 ubiquitin-protein li 95.3 0.0058 2E-07 56.3 2.1 41 1058-1100 3-50 (101)
111 3vkg_A Dynein heavy chain, cyt 95.0 2.2 7.7E-05 60.7 26.7 80 759-838 2020-2099(3245)
112 2efr_A General control protein 94.9 3.4 0.00012 41.2 21.5 106 612-741 2-107 (155)
113 3o0z_A RHO-associated protein 94.5 4.5 0.00015 40.8 20.9 112 692-838 29-140 (168)
114 2bay_A PRE-mRNA splicing facto 93.1 0.033 1.1E-06 47.1 1.8 42 1057-1099 4-50 (61)
115 3ec2_A DNA replication protein 92.6 0.028 9.6E-07 56.9 0.8 52 140-192 5-56 (180)
116 3oja_B Anopheles plasmodium-re 92.3 0.74 2.5E-05 55.6 12.9 15 657-671 457-471 (597)
117 2w58_A DNAI, primosome compone 91.3 0.071 2.4E-06 54.8 2.1 51 141-192 21-72 (202)
118 3o0z_A RHO-associated protein 91.2 14 0.00047 37.3 19.6 70 755-845 8-77 (168)
119 2jee_A YIIU; FTSZ, septum, coi 90.8 2.5 8.5E-05 37.6 11.1 58 762-840 8-65 (81)
120 3oja_B Anopheles plasmodium-re 90.5 5.4 0.00018 48.0 17.9 31 711-741 463-493 (597)
121 2efr_A General control protein 90.5 7.5 0.00026 38.8 15.6 124 712-843 29-153 (155)
122 2qgz_A Helicase loader, putati 90.3 0.096 3.3E-06 58.4 2.2 51 141-192 120-170 (308)
123 3s4r_A Vimentin; alpha-helix, 88.8 5.6 0.00019 36.3 12.3 39 914-959 54-92 (93)
124 2ocy_A RAB guanine nucleotide 88.7 20 0.0007 35.6 19.7 27 715-741 3-29 (154)
125 3nmd_A CGMP dependent protein 87.8 0.92 3.2E-05 39.3 5.9 50 691-740 20-69 (72)
126 1vyx_A ORF K3, K3RING; zinc-bi 87.7 0.24 8.3E-06 41.6 2.3 44 1055-1098 5-58 (60)
127 3hnw_A Uncharacterized protein 87.3 3.5 0.00012 40.5 10.6 30 712-741 69-98 (138)
128 3hnw_A Uncharacterized protein 87.3 4.5 0.00016 39.6 11.4 28 714-741 78-105 (138)
129 2v4h_A NF-kappa-B essential mo 86.8 2.7 9.1E-05 39.3 8.8 27 715-741 35-61 (110)
130 4etp_B Spindle POLE BODY-assoc 86.4 3.3 0.00011 45.8 10.8 121 98-241 57-183 (333)
131 3t15_A Ribulose bisphosphate c 85.8 0.29 9.8E-06 54.0 2.2 48 144-191 2-53 (293)
132 3k1l_B Fancl; UBC, ring, RWD, 85.5 0.18 6.3E-06 56.4 0.5 44 1057-1101 309-375 (381)
133 2fxo_A Myosin heavy chain, car 85.2 28 0.00094 33.5 16.8 15 824-838 91-105 (129)
134 2fxo_A Myosin heavy chain, car 85.0 28 0.00097 33.5 16.7 39 760-798 83-121 (129)
135 3s9g_A Protein hexim1; cyclin 84.3 4.4 0.00015 36.9 8.6 54 786-839 35-88 (104)
136 1x79_B RAB GTPase binding effe 84.1 1.9 6.6E-05 40.6 6.6 100 609-717 5-104 (112)
137 2w83_C C-JUN-amino-terminal ki 83.3 8.5 0.00029 33.5 9.6 43 810-852 24-66 (77)
138 2v66_B Nuclear distribution pr 82.9 32 0.0011 32.4 15.8 63 774-843 42-104 (111)
139 2bjv_A PSP operon transcriptio 82.5 0.37 1.3E-05 51.8 1.3 45 141-191 2-46 (265)
140 4emc_A Monopolin complex subun 81.8 5.7 0.0002 40.5 9.5 28 714-741 9-36 (190)
141 2eqb_B RAB guanine nucleotide 81.8 31 0.0011 31.6 14.0 15 827-841 80-94 (97)
142 3ghg_A Fibrinogen alpha chain; 81.3 19 0.00067 42.0 14.7 57 687-746 103-159 (562)
143 3a7p_A Autophagy protein 16; c 80.8 21 0.00072 35.3 12.8 40 783-843 98-137 (152)
144 1jbk_A CLPB protein; beta barr 80.8 0.75 2.6E-05 45.5 2.8 30 163-192 32-61 (195)
145 4b4t_M 26S protease regulatory 80.7 1.5 5.2E-05 51.1 5.7 73 141-213 177-271 (434)
146 1x79_B RAB GTPase binding effe 80.3 33 0.0011 32.3 13.4 31 711-741 45-75 (112)
147 3h4m_A Proteasome-activating n 80.2 0.62 2.1E-05 50.3 2.0 51 141-191 13-68 (285)
148 2r62_A Cell division protease 80.2 0.62 2.1E-05 49.9 2.0 50 141-191 7-61 (268)
149 2v66_B Nuclear distribution pr 80.1 40 0.0014 31.7 14.0 23 905-927 87-109 (111)
150 3cf0_A Transitional endoplasmi 78.9 0.7 2.4E-05 50.9 2.0 51 141-191 11-66 (301)
151 3tnu_B Keratin, type II cytosk 78.9 20 0.00068 34.5 12.1 20 824-843 104-123 (129)
152 1l8q_A Chromosomal replication 78.0 0.8 2.7E-05 50.7 2.1 49 141-192 7-55 (324)
153 3te6_A Regulatory protein SIR3 77.8 0.79 2.7E-05 51.4 2.0 27 165-191 36-62 (318)
154 1ixz_A ATP-dependent metallopr 77.8 0.87 3E-05 48.4 2.2 50 141-191 12-66 (254)
155 2jee_A YIIU; FTSZ, septum, coi 77.6 21 0.00071 31.7 10.5 31 824-854 42-72 (81)
156 2p65_A Hypothetical protein PF 77.6 0.85 2.9E-05 45.1 2.0 30 163-192 32-61 (187)
157 2kjq_A DNAA-related protein; s 77.5 1.2 4.2E-05 43.8 3.1 18 175-192 37-54 (149)
158 2ct0_A Non-SMC element 1 homol 77.5 2 7E-05 37.5 4.1 45 1056-1101 15-66 (74)
159 3tnu_A Keratin, type I cytoske 77.0 18 0.0006 35.0 11.1 20 824-843 106-125 (131)
160 4b4t_K 26S protease regulatory 77.0 2.6 9E-05 49.0 6.2 74 142-215 169-264 (428)
161 1g8p_A Magnesium-chelatase 38 76.5 0.73 2.5E-05 51.2 1.3 43 141-191 20-62 (350)
162 2v4h_A NF-kappa-B essential mo 75.6 26 0.00089 32.7 11.0 27 773-799 82-108 (110)
163 3mq7_A Bone marrow stromal ant 75.4 36 0.0012 32.0 11.9 54 688-741 51-108 (121)
164 1iy2_A ATP-dependent metallopr 75.4 0.68 2.3E-05 50.2 0.6 50 141-191 36-90 (278)
165 3bos_A Putative DNA replicatio 75.2 1.5 5.1E-05 45.4 3.2 45 142-192 25-70 (242)
166 2ko5_A Ring finger protein Z; 75.0 0.91 3.1E-05 41.2 1.2 46 1056-1103 28-77 (99)
167 1d2n_A N-ethylmaleimide-sensit 74.8 1.3 4.6E-05 47.6 2.7 21 171-191 61-81 (272)
168 3swk_A Vimentin; cytoskeleton, 74.7 40 0.0014 30.2 12.0 78 818-946 2-79 (86)
169 3ol1_A Vimentin; structural ge 74.2 39 0.0013 32.0 12.5 54 688-741 39-99 (119)
170 3b9p_A CG5977-PA, isoform A; A 74.1 1 3.4E-05 49.1 1.5 51 141-191 17-71 (297)
171 4b4t_L 26S protease subunit RP 73.8 3.8 0.00013 47.8 6.4 75 141-215 177-273 (437)
172 3oja_A Leucine-rich immune mol 73.2 50 0.0017 38.5 16.0 28 775-802 429-456 (487)
173 3d8b_A Fidgetin-like protein 1 73.0 0.99 3.4E-05 51.0 1.2 51 141-191 80-134 (357)
174 3s4r_A Vimentin; alpha-helix, 72.7 35 0.0012 31.0 11.2 81 761-850 10-90 (93)
175 3oja_A Leucine-rich immune mol 71.4 1.3E+02 0.0045 34.8 19.1 28 824-851 443-470 (487)
176 2z4s_A Chromosomal replication 71.1 1.7 5.9E-05 50.7 2.6 49 140-192 100-148 (440)
177 4gkw_A Spindle assembly abnorm 70.9 62 0.0021 30.9 12.5 17 653-669 22-38 (167)
178 3ghg_A Fibrinogen alpha chain; 70.5 54 0.0018 38.5 14.5 20 1060-1079 440-459 (562)
179 1qde_A EIF4A, translation init 70.5 1.9 6.4E-05 44.6 2.5 25 165-191 44-68 (224)
180 1vec_A ATP-dependent RNA helic 70.2 2.1 7.3E-05 43.5 2.8 25 165-191 33-57 (206)
181 2v1u_A Cell division control p 70.0 1 3.4E-05 50.5 0.3 22 171-192 41-62 (387)
182 2qz4_A Paraplegin; AAA+, SPG7, 70.0 0.81 2.8E-05 48.5 -0.4 19 173-191 38-56 (262)
183 2zet_C Melanophilin; complex, 70.0 2.2 7.7E-05 42.6 2.8 65 1030-1095 42-116 (153)
184 2gxq_A Heat resistant RNA depe 69.7 1.9 6.6E-05 43.8 2.4 24 166-191 32-55 (207)
185 3s84_A Apolipoprotein A-IV; fo 69.5 1.3E+02 0.0045 32.6 23.7 7 613-619 14-20 (273)
186 1lv7_A FTSH; alpha/beta domain 69.2 1.7 5.8E-05 46.3 1.9 46 141-191 8-62 (257)
187 3u1c_A Tropomyosin alpha-1 cha 69.1 71 0.0024 29.4 15.0 51 691-741 10-60 (101)
188 3a7p_A Autophagy protein 16; c 68.5 65 0.0022 31.9 12.6 55 687-741 72-126 (152)
189 1xwi_A SKD1 protein; VPS4B, AA 67.9 1.4 4.7E-05 49.1 0.9 50 142-191 9-62 (322)
190 3u1c_A Tropomyosin alpha-1 cha 67.9 75 0.0026 29.2 13.7 27 715-741 27-53 (101)
191 1fnn_A CDC6P, cell division co 67.5 3.2 0.00011 46.4 3.9 45 142-191 14-61 (389)
192 3syl_A Protein CBBX; photosynt 67.5 1.7 5.7E-05 47.4 1.4 20 172-191 65-84 (309)
193 4b4t_I 26S protease regulatory 66.9 10 0.00035 44.1 7.8 112 104-215 128-274 (437)
194 2chg_A Replication factor C sm 66.7 2.3 7.9E-05 43.0 2.2 22 171-192 35-56 (226)
195 3cve_A Homer protein homolog 1 66.3 44 0.0015 29.0 9.7 27 715-741 4-30 (72)
196 3jsv_C NF-kappa-B essential mo 65.9 30 0.001 31.4 8.9 78 715-803 6-90 (94)
197 3dkp_A Probable ATP-dependent 65.0 2.8 9.7E-05 44.0 2.6 25 165-191 59-83 (245)
198 3uk6_A RUVB-like 2; hexameric 64.8 3 0.0001 46.6 2.9 45 142-191 41-87 (368)
199 3vfd_A Spastin; ATPase, microt 64.3 1.9 6.4E-05 49.2 1.1 52 140-191 110-165 (389)
200 3bor_A Human initiation factor 64.3 1.8 6.2E-05 45.5 0.9 25 165-191 60-84 (237)
201 3mq7_A Bone marrow stromal ant 64.2 90 0.0031 29.4 11.9 27 827-853 22-48 (121)
202 1sxj_C Activator 1 40 kDa subu 63.8 2.9 0.0001 46.5 2.5 42 143-192 23-64 (340)
203 1p9r_A General secretion pathw 63.7 3.2 0.00011 48.2 2.8 29 164-192 157-185 (418)
204 3bas_A Myosin heavy chain, str 63.6 51 0.0017 29.6 10.2 53 770-843 31-83 (89)
205 3ol1_A Vimentin; structural ge 63.3 1E+02 0.0035 29.1 15.5 92 813-955 17-108 (119)
206 3eie_A Vacuolar protein sortin 63.2 2 6.8E-05 47.6 1.0 50 142-191 15-68 (322)
207 3ly5_A ATP-dependent RNA helic 62.9 2.5 8.5E-05 45.4 1.7 26 164-191 83-108 (262)
208 2pl3_A Probable ATP-dependent 62.7 3.3 0.00011 43.2 2.6 25 165-191 55-79 (236)
209 1t6n_A Probable ATP-dependent 62.3 3.3 0.00011 42.7 2.4 25 165-191 44-68 (220)
210 2x8a_A Nuclear valosin-contain 62.2 1.3 4.6E-05 48.1 -0.6 50 142-191 7-61 (274)
211 2qby_B CDC6 homolog 3, cell di 62.2 4.2 0.00014 45.5 3.4 46 141-191 16-62 (384)
212 3cvf_A Homer-3, homer protein 62.1 22 0.00077 31.4 7.2 30 707-736 44-73 (79)
213 4gkw_A Spindle assembly abnorm 61.6 1.1E+02 0.0039 29.1 20.8 58 684-741 12-76 (167)
214 3jsv_C NF-kappa-B essential mo 61.5 52 0.0018 29.9 9.6 32 767-798 16-50 (94)
215 4b4t_J 26S protease regulatory 61.5 4.9 0.00017 46.4 3.8 74 142-215 145-240 (405)
216 2qp9_X Vacuolar protein sortin 61.4 2.2 7.6E-05 48.1 1.0 51 141-191 47-101 (355)
217 2pms_C Pneumococcal surface pr 61.4 66 0.0022 30.8 10.8 22 722-743 10-31 (125)
218 3hu3_A Transitional endoplasmi 61.0 3.2 0.00011 49.1 2.3 50 142-191 201-255 (489)
219 3b6e_A Interferon-induced heli 60.9 1.9 6.5E-05 43.9 0.3 24 167-192 43-66 (216)
220 3jvv_A Twitching mobility prot 60.7 3.4 0.00012 46.8 2.4 28 165-192 114-141 (356)
221 1sxj_D Activator 1 41 kDa subu 60.7 3.1 0.00011 46.0 2.0 42 143-192 35-76 (353)
222 3r6n_A Desmoplakin; spectrin r 60.2 2.5E+02 0.0086 32.6 19.5 19 655-673 8-26 (450)
223 1wrb_A DJVLGB; RNA helicase, D 59.9 3.7 0.00013 43.4 2.3 24 166-191 54-77 (253)
224 3iuy_A Probable ATP-dependent 59.2 4.1 0.00014 42.2 2.5 24 166-191 51-74 (228)
225 4b4t_H 26S protease regulatory 59.2 4.2 0.00014 47.7 2.8 74 142-215 206-301 (467)
226 4emc_A Monopolin complex subun 59.1 41 0.0014 34.3 9.6 45 697-741 13-57 (190)
227 1ykh_B RNA polymerase II holoe 59.0 1.1E+02 0.0038 29.5 12.4 96 608-709 1-111 (132)
228 3iox_A AGI/II, PA; alpha helix 58.2 2.1E+02 0.0071 33.5 16.4 24 776-799 11-34 (497)
229 2zan_A Vacuolar protein sortin 58.2 2.4 8.2E-05 49.5 0.5 51 141-191 130-184 (444)
230 1hqc_A RUVB; extended AAA-ATPa 58.1 2.9 9.9E-05 45.8 1.2 45 142-191 9-55 (324)
231 2e7s_A RAB guanine nucleotide 58.0 15 0.00051 35.7 5.9 30 712-741 104-133 (135)
232 1yke_B RNA polymerase II holoe 57.9 1.1E+02 0.0037 30.3 12.3 114 608-741 1-129 (151)
233 3fmo_B ATP-dependent RNA helic 57.8 3.8 0.00013 45.0 2.0 27 165-191 122-148 (300)
234 2c9o_A RUVB-like 1; hexameric 57.8 4.9 0.00017 46.9 3.1 46 141-191 33-80 (456)
235 1iqp_A RFCS; clamp loader, ext 57.7 4.6 0.00016 44.0 2.7 22 171-192 43-64 (327)
236 1ci6_A Transcription factor AT 57.5 23 0.0008 29.8 6.4 40 770-809 19-58 (63)
237 3ber_A Probable ATP-dependent 57.0 4.5 0.00015 43.0 2.4 25 165-191 73-97 (249)
238 3efg_A Protein SLYX homolog; x 56.9 17 0.00059 32.0 5.7 38 758-795 26-63 (78)
239 3fe2_A Probable ATP-dependent 56.9 4.4 0.00015 42.6 2.2 25 165-191 59-83 (242)
240 2k48_A Nucleoprotein; viral pr 56.8 47 0.0016 30.7 8.5 22 724-745 81-102 (107)
241 3eiq_A Eukaryotic initiation f 56.7 4.7 0.00016 45.4 2.6 25 165-191 70-94 (414)
242 2oxc_A Probable ATP-dependent 56.5 4.9 0.00017 41.9 2.5 24 166-191 55-78 (230)
243 2qby_A CDC6 homolog 1, cell di 56.4 3 0.0001 46.5 0.9 20 172-191 43-62 (386)
244 3tnu_B Keratin, type II cytosk 56.3 1.4E+02 0.0048 28.5 13.0 37 691-727 37-73 (129)
245 3co5_A Putative two-component 56.3 5.9 0.0002 38.2 2.9 20 173-192 26-45 (143)
246 3cve_A Homer protein homolog 1 56.2 67 0.0023 27.9 9.0 32 705-736 36-67 (72)
247 3llm_A ATP-dependent RNA helic 56.1 4.2 0.00014 42.7 1.9 26 164-191 68-93 (235)
248 3cvf_A Homer-3, homer protein 55.9 83 0.0028 27.8 9.8 30 712-741 7-36 (79)
249 3i00_A HIP-I, huntingtin-inter 55.9 90 0.0031 29.7 10.9 29 774-802 15-43 (120)
250 2i1j_A Moesin; FERM, coiled-co 55.9 9.1 0.00031 46.2 5.0 12 935-946 516-527 (575)
251 3pfi_A Holliday junction ATP-d 55.6 3.4 0.00012 45.7 1.2 44 143-191 27-72 (338)
252 3tnu_A Keratin, type I cytoske 55.3 1E+02 0.0035 29.5 11.5 23 775-797 99-121 (131)
253 1go4_E MAD1 (mitotic arrest de 55.1 15 0.00053 33.8 5.2 64 773-839 18-91 (100)
254 1deb_A APC protein, adenomatou 54.8 34 0.0012 27.4 6.2 40 775-814 11-50 (54)
255 2eyu_A Twitching motility prot 53.9 5.1 0.00018 43.2 2.2 21 172-192 23-43 (261)
256 1zxa_A CGMP-dependent protein 53.2 16 0.00055 31.3 4.6 43 699-741 13-55 (67)
257 1q0u_A Bstdead; DEAD protein, 53.1 3.7 0.00013 42.4 0.9 24 166-191 35-58 (219)
258 3qh9_A Liprin-beta-2; coiled-c 53.0 46 0.0016 29.4 7.5 33 702-734 41-77 (81)
259 2jun_A Midline-1; B-BOX, TRIM, 52.7 3.8 0.00013 37.3 0.8 29 1057-1086 4-35 (101)
260 1deq_A Fibrinogen (alpha chain 52.6 2E+02 0.0067 32.5 14.4 22 762-783 136-157 (390)
261 1u0j_A DNA replication protein 52.3 6.8 0.00023 42.6 2.8 30 163-192 90-122 (267)
262 3fmp_B ATP-dependent RNA helic 52.2 5.8 0.0002 46.1 2.5 26 165-190 122-147 (479)
263 3m91_A Proteasome-associated A 51.8 39 0.0013 27.4 6.4 15 788-802 16-30 (51)
264 1tue_A Replication protein E1; 51.5 4.4 0.00015 42.6 1.1 27 166-192 48-76 (212)
265 3n70_A Transport activator; si 51.4 4.7 0.00016 39.0 1.3 20 172-191 22-41 (145)
266 3pxg_A Negative regulator of g 51.2 8.7 0.0003 45.0 3.8 42 143-192 178-219 (468)
267 1in4_A RUVB, holliday junction 51.1 6.6 0.00023 43.7 2.6 16 176-191 53-68 (334)
268 2j0s_A ATP-dependent RNA helic 50.8 6.2 0.00021 44.6 2.3 24 166-191 68-91 (410)
269 1njg_A DNA polymerase III subu 50.6 6.9 0.00024 39.8 2.5 18 175-192 46-63 (250)
270 3a7o_A Autophagy protein 16; c 50.3 66 0.0023 27.6 7.8 22 651-672 20-41 (75)
271 2a01_A Apolipoprotein A-I; fou 50.3 2.5E+02 0.0086 29.6 15.6 37 636-672 82-119 (243)
272 1ic2_A Tropomyosin alpha chain 50.1 1.3E+02 0.0045 26.3 11.1 53 689-741 5-57 (81)
273 2wt7_A Proto-oncogene protein 49.7 34 0.0012 28.7 6.1 34 818-851 25-58 (63)
274 3mq9_A Bone marrow stromal ant 49.3 1.9E+02 0.0065 33.3 14.9 26 828-853 395-420 (471)
275 3pey_A ATP-dependent RNA helic 49.2 6.2 0.00021 43.9 2.0 27 165-191 35-61 (395)
276 1w5s_A Origin recognition comp 49.2 8.8 0.0003 43.2 3.3 25 167-191 40-69 (412)
277 2fz4_A DNA repair protein RAD2 49.2 6.6 0.00023 41.5 2.1 24 167-192 103-126 (237)
278 1ofh_A ATP-dependent HSL prote 49.1 6.2 0.00021 42.6 1.9 18 174-191 50-67 (310)
279 3pvs_A Replication-associated 49.0 8 0.00027 45.1 3.0 43 144-191 25-67 (447)
280 3fht_A ATP-dependent RNA helic 49.0 6.5 0.00022 44.1 2.1 27 165-191 55-81 (412)
281 1t2k_D Cyclic-AMP-dependent tr 48.2 37 0.0013 28.2 6.1 33 818-850 24-56 (61)
282 2w83_C C-JUN-amino-terminal ki 47.9 83 0.0028 27.5 8.2 65 775-839 10-74 (77)
283 1s2m_A Putative ATP-dependent 47.7 7 0.00024 43.9 2.1 24 166-191 52-75 (400)
284 2z0m_A 337AA long hypothetical 47.5 7.6 0.00026 42.1 2.3 24 166-191 25-48 (337)
285 2xnx_M M protein, M1-BC1; cell 47.5 1.1E+02 0.0038 29.9 10.0 19 829-847 114-132 (146)
286 2ce7_A Cell division protein F 47.2 5.2 0.00018 47.2 1.0 47 140-191 11-66 (476)
287 4fcw_A Chaperone protein CLPB; 46.9 6.2 0.00021 42.8 1.5 18 174-191 47-64 (311)
288 1gvn_B Zeta; postsegregational 46.6 14 0.00049 40.2 4.3 31 161-191 15-50 (287)
289 2oap_1 GSPE-2, type II secreti 46.5 8 0.00027 46.0 2.4 21 170-192 258-278 (511)
290 4fi5_A Nucleoprotein; structur 46.2 75 0.0026 29.7 8.2 65 650-746 23-90 (113)
291 3h1t_A Type I site-specific re 46.2 7.9 0.00027 46.4 2.4 28 164-192 189-216 (590)
292 3nw0_A Non-structural maintena 46.1 9.8 0.00033 40.7 2.8 46 1056-1102 180-232 (238)
293 1gd2_E Transcription factor PA 46.0 27 0.00092 30.2 5.0 29 774-802 29-57 (70)
294 2ic6_A Nucleocapsid protein; h 45.9 89 0.003 27.5 8.2 26 650-675 6-31 (78)
295 1wt6_A Myotonin-protein kinase 45.7 68 0.0023 28.3 7.4 38 706-743 33-70 (81)
296 2i4i_A ATP-dependent RNA helic 45.3 8.6 0.00029 43.3 2.4 24 166-191 46-69 (417)
297 2ewv_A Twitching motility prot 45.2 6.6 0.00022 44.7 1.4 26 167-192 129-154 (372)
298 3nmd_A CGMP dependent protein 44.8 21 0.00073 30.9 4.1 44 757-800 23-66 (72)
299 2r44_A Uncharacterized protein 44.8 5.5 0.00019 43.9 0.7 23 167-191 41-63 (331)
300 3i00_A HIP-I, huntingtin-inter 44.7 1.3E+02 0.0043 28.7 9.9 71 648-741 14-84 (120)
301 2dhr_A FTSH; AAA+ protein, hex 44.4 5 0.00017 47.6 0.3 51 140-191 26-81 (499)
302 3swk_A Vimentin; cytoskeleton, 44.4 1E+02 0.0035 27.5 8.8 76 714-804 3-79 (86)
303 1ci6_A Transcription factor AT 44.1 49 0.0017 27.8 6.3 32 818-849 25-56 (63)
304 2i1j_A Moesin; FERM, coiled-co 43.7 21 0.00072 43.0 5.6 15 149-163 21-35 (575)
305 3u61_B DNA polymerase accessor 43.6 8 0.00027 42.4 1.7 19 174-192 48-66 (324)
306 2e7s_A RAB guanine nucleotide 43.0 99 0.0034 30.0 9.0 59 773-831 24-82 (135)
307 3s9g_A Protein hexim1; cyclin 43.0 1.2E+02 0.0042 27.6 8.8 20 722-741 34-53 (104)
308 1go4_E MAD1 (mitotic arrest de 42.9 47 0.0016 30.6 6.4 32 712-743 13-44 (100)
309 1zbd_B Rabphilin-3A; G protein 42.7 5.6 0.00019 38.8 0.2 49 1030-1085 35-88 (134)
310 2fiy_A Protein FDHE homolog; F 42.7 7.7 0.00026 43.1 1.4 42 1055-1096 181-231 (309)
311 1ojl_A Transcriptional regulat 42.6 8 0.00027 42.5 1.5 20 172-191 23-42 (304)
312 2lw1_A ABC transporter ATP-bin 42.4 1E+02 0.0036 27.4 8.6 21 712-732 64-84 (89)
313 3q8t_A Beclin-1; autophagy, AT 42.3 2E+02 0.0068 26.2 13.8 30 712-741 19-48 (96)
314 3m91_A Proteasome-associated A 42.2 60 0.0021 26.3 6.1 38 816-853 9-46 (51)
315 4h22_A Leucine-rich repeat fli 42.1 1E+02 0.0034 28.6 8.3 55 729-797 27-81 (103)
316 1m1j_B Fibrinogen beta chain; 41.9 3E+02 0.01 32.0 14.6 14 728-741 178-191 (464)
317 1m1j_C Fibrinogen gamma chain; 41.3 3.2E+02 0.011 31.4 14.5 46 689-741 83-128 (409)
318 1sxj_E Activator 1 40 kDa subu 41.0 8.5 0.00029 42.6 1.4 16 177-192 39-54 (354)
319 1xti_A Probable ATP-dependent 40.9 11 0.00037 42.0 2.3 25 165-191 38-62 (391)
320 3c9i_A Tail needle protein GP2 40.9 89 0.003 32.2 8.5 57 685-741 79-135 (242)
321 2chq_A Replication factor C sm 40.7 7.2 0.00025 42.2 0.8 22 171-192 35-56 (319)
322 3fho_A ATP-dependent RNA helic 40.5 10 0.00035 44.7 2.1 25 167-191 151-175 (508)
323 3q8t_A Beclin-1; autophagy, AT 40.4 2.1E+02 0.0073 25.9 13.2 28 775-802 26-53 (96)
324 1rif_A DAR protein, DNA helica 40.4 7.6 0.00026 41.8 0.9 24 167-192 123-146 (282)
325 2ic9_A Nucleocapsid protein; h 40.3 1.1E+02 0.0038 27.9 8.2 26 650-675 6-31 (96)
326 4b3f_X DNA-binding protein smu 40.0 11 0.00038 46.0 2.3 27 165-192 197-223 (646)
327 2w6a_A ARF GTPase-activating p 39.9 1.3E+02 0.0045 24.9 7.7 43 760-802 13-55 (63)
328 3i5x_A ATP-dependent RNA helic 39.6 14 0.00046 43.9 3.0 27 165-191 102-128 (563)
329 2zqm_A Prefoldin beta subunit 39.6 2E+02 0.0068 26.4 10.6 92 716-853 4-107 (117)
330 2db3_A ATP-dependent RNA helic 39.3 12 0.00041 43.1 2.3 25 165-191 86-110 (434)
331 2cs3_A Protein C14ORF4, MY039 39.0 6.4 0.00022 34.6 0.0 30 1055-1085 14-47 (93)
332 3oiy_A Reverse gyrase helicase 38.7 10 0.00035 43.0 1.6 24 165-190 29-52 (414)
333 1jr3_A DNA polymerase III subu 38.7 17 0.00058 40.2 3.5 20 173-192 37-56 (373)
334 1n0w_A DNA repair protein RAD5 38.6 12 0.00043 38.6 2.2 31 162-192 9-42 (243)
335 1c4o_A DNA nucleotide excision 38.6 18 0.00062 44.3 3.9 46 142-193 2-47 (664)
336 1w36_D RECD, exodeoxyribonucle 38.5 11 0.00039 45.6 2.1 19 174-192 164-182 (608)
337 1qvr_A CLPB protein; coiled co 38.3 9.4 0.00032 48.3 1.4 42 143-192 168-209 (854)
338 3he5_A Synzip1; heterodimeric 38.3 97 0.0033 23.6 6.2 40 786-825 8-47 (49)
339 3mq9_A Bone marrow stromal ant 38.0 3.8E+02 0.013 30.7 15.1 14 728-741 400-413 (471)
340 3hws_A ATP-dependent CLP prote 38.0 9.8 0.00033 42.7 1.3 18 174-191 51-68 (363)
341 1sxj_B Activator 1 37 kDa subu 37.7 13 0.00043 40.3 2.1 23 170-192 38-60 (323)
342 2v1x_A ATP-dependent DNA helic 37.7 16 0.00056 44.1 3.3 25 165-191 52-76 (591)
343 1hv8_A Putative ATP-dependent 37.7 12 0.00042 41.0 2.0 25 166-191 37-61 (367)
344 2k48_A Nucleoprotein; viral pr 37.6 1.2E+02 0.0043 27.9 8.2 66 608-673 33-99 (107)
345 3a7o_A Autophagy protein 16; c 37.6 1.2E+02 0.0042 25.9 7.5 17 690-706 18-34 (75)
346 3u59_A Tropomyosin beta chain; 37.5 2.4E+02 0.0082 25.7 14.7 22 781-802 37-58 (101)
347 1fuu_A Yeast initiation factor 37.2 8 0.00027 43.1 0.4 25 165-191 51-75 (394)
348 2wt7_A Proto-oncogene protein 36.6 90 0.0031 26.1 6.8 31 772-802 21-51 (63)
349 4a2p_A RIG-I, retinoic acid in 36.6 14 0.00049 43.2 2.6 25 165-191 15-39 (556)
350 1m1j_B Fibrinogen beta chain; 36.6 4.6E+02 0.016 30.5 15.0 15 824-838 176-190 (464)
351 3lay_A Zinc resistance-associa 36.5 98 0.0033 31.4 8.3 54 650-709 86-139 (175)
352 2no2_A HIP-I, huntingtin-inter 36.1 2.7E+02 0.0092 25.8 12.0 93 701-803 2-97 (107)
353 2p5t_B PEZT; postsegregational 35.8 21 0.00072 37.8 3.5 30 162-191 15-49 (253)
354 4fm3_A Uncharacterized hypothe 35.5 2.6E+02 0.009 25.6 12.4 79 663-741 7-87 (98)
355 1x8y_A Lamin A/C; structural p 35.3 1.8E+02 0.0063 25.8 9.0 48 775-843 29-76 (86)
356 3tbk_A RIG-I helicase domain; 34.6 16 0.00056 42.6 2.6 24 166-191 13-36 (555)
357 2eqb_B RAB guanine nucleotide 34.5 2.7E+02 0.0093 25.5 12.9 49 693-741 8-56 (97)
358 3upu_A ATP-dependent DNA helic 34.4 18 0.00062 42.0 2.9 37 151-192 27-63 (459)
359 1hjb_A Ccaat/enhancer binding 34.4 83 0.0028 28.3 6.5 31 821-851 41-71 (87)
360 2jne_A Hypothetical protein YF 34.0 9.8 0.00034 34.8 0.4 40 1055-1099 31-73 (101)
361 1qvr_A CLPB protein; coiled co 33.8 11 0.00039 47.5 1.1 17 175-191 589-605 (854)
362 1gk4_A Vimentin; intermediate 33.8 2.5E+02 0.0084 24.7 11.5 20 824-843 55-74 (84)
363 1g6u_A Domain swapped dimer; d 33.7 53 0.0018 24.9 4.2 25 718-742 20-44 (48)
364 2cvh_A DNA repair and recombin 33.7 17 0.00058 36.9 2.2 30 163-192 6-38 (220)
365 3b85_A Phosphate starvation-in 33.5 18 0.00062 37.5 2.4 26 164-191 14-39 (208)
366 3mov_A Lamin-B1; LMNB1, B-type 33.4 1.9E+02 0.0066 26.2 8.9 20 824-843 66-85 (95)
367 2fwr_A DNA repair protein RAD2 33.2 16 0.00055 42.2 2.2 23 167-191 103-125 (472)
368 2wvr_A Geminin; DNA replicatio 33.2 80 0.0027 32.5 6.9 29 774-802 115-143 (209)
369 1wlq_A Geminin; coiled-coil; 2 33.2 93 0.0032 27.6 6.4 30 773-802 37-66 (83)
370 4ad8_A DNA repair protein RECN 33.0 4E+02 0.014 31.1 14.3 14 178-191 64-77 (517)
371 1deq_A Fibrinogen (alpha chain 33.0 4.2E+02 0.014 29.9 13.1 32 758-789 86-117 (390)
372 3sqw_A ATP-dependent RNA helic 33.0 20 0.00068 42.9 3.0 27 165-191 51-77 (579)
373 2w0m_A SSO2452; RECA, SSPF, un 32.8 16 0.00054 37.3 1.8 29 164-192 10-41 (235)
374 1um8_A ATP-dependent CLP prote 32.8 12 0.00039 42.2 0.8 18 174-191 72-89 (376)
375 2gk6_A Regulator of nonsense t 32.6 17 0.00057 44.2 2.2 26 165-192 188-213 (624)
376 2yy0_A C-MYC-binding protein; 32.2 65 0.0022 26.2 4.9 30 712-741 20-49 (53)
377 4gl2_A Interferon-induced heli 32.1 17 0.00057 44.4 2.1 26 165-192 15-40 (699)
378 3cf2_A TER ATPase, transitiona 32.1 22 0.00075 44.6 3.2 51 141-191 200-255 (806)
379 3ghg_C Fibrinogen gamma chain; 32.0 6.2E+02 0.021 29.0 14.8 47 695-741 89-135 (411)
380 1rz3_A Hypothetical protein rb 31.6 24 0.00083 35.8 3.0 28 164-191 9-39 (201)
381 3b9q_A Chloroplast SRP recepto 31.4 24 0.00083 38.8 3.1 17 175-191 101-117 (302)
382 3c8u_A Fructokinase; YP_612366 31.4 23 0.0008 36.1 2.8 29 163-191 9-39 (208)
383 2ic6_A Nucleocapsid protein; h 31.3 1.4E+02 0.0047 26.3 7.1 63 610-672 5-68 (78)
384 3nbx_X ATPase RAVA; AAA+ ATPas 31.1 19 0.00064 42.7 2.3 25 165-191 34-58 (500)
385 1cii_A Colicin IA; bacteriocin 31.1 2.2E+02 0.0074 32.9 10.5 109 711-826 349-457 (602)
386 4gp7_A Metallophosphoesterase; 31.0 14 0.00047 36.7 0.9 18 175-192 10-27 (171)
387 2dgc_A Protein (GCN4); basic d 31.0 56 0.0019 27.5 4.5 31 817-847 31-61 (63)
388 3lw7_A Adenylate kinase relate 30.9 14 0.00048 35.7 0.9 16 176-191 3-18 (179)
389 2r8r_A Sensor protein; KDPD, P 30.7 13 0.00043 39.6 0.6 19 174-192 6-24 (228)
390 3onj_A T-snare VTI1; helix, HA 30.7 1.7E+02 0.0057 26.6 8.1 51 896-946 35-89 (97)
391 2q6q_A Spindle POLE BODY compo 30.7 2.5E+02 0.0086 23.9 8.8 30 712-741 4-33 (74)
392 4a74_A DNA repair and recombin 30.6 22 0.00076 36.2 2.5 29 163-191 11-42 (231)
393 1t2k_D Cyclic-AMP-dependent tr 30.4 1.2E+02 0.004 25.1 6.4 31 772-802 20-50 (61)
394 3iv1_A Tumor susceptibility ge 30.0 2.9E+02 0.0098 24.3 9.3 28 714-741 14-41 (78)
395 1wp9_A ATP-dependent RNA helic 29.8 18 0.00061 41.0 1.7 24 166-192 18-41 (494)
396 1ypw_A Transitional endoplasmi 29.5 20 0.00068 45.1 2.2 52 140-191 199-255 (806)
397 3pwf_A Rubrerythrin; non heme 29.5 42 0.0014 33.9 4.2 15 1088-1102 154-168 (170)
398 2ykg_A Probable ATP-dependent 29.3 22 0.00075 43.3 2.5 24 166-191 22-45 (696)
399 3m9b_A Proteasome-associated A 28.9 50 0.0017 35.3 4.8 15 823-837 82-96 (251)
400 2ic9_A Nucleocapsid protein; h 28.9 1.5E+02 0.005 27.1 7.1 64 609-672 4-68 (96)
401 3tau_A Guanylate kinase, GMP k 28.8 18 0.0006 37.1 1.3 17 175-191 9-25 (208)
402 1zxa_A CGMP-dependent protein 28.8 82 0.0028 26.9 5.2 38 897-934 13-50 (67)
403 2qag_C Septin-7; cell cycle, c 28.7 15 0.00053 42.4 1.0 23 169-191 26-48 (418)
404 4ag6_A VIRB4 ATPase, type IV s 28.6 13 0.00045 42.1 0.4 17 176-192 37-53 (392)
405 2k0a_A PRE-mRNA-splicing facto 28.6 17 0.00057 33.6 0.9 35 1057-1096 30-66 (109)
406 1uii_A Geminin; human, DNA rep 28.5 79 0.0027 28.1 5.1 29 774-802 46-74 (83)
407 1gd2_E Transcription factor PA 28.4 95 0.0033 26.7 5.6 16 782-797 51-66 (70)
408 1sxj_A Activator 1 95 kDa subu 28.4 21 0.00072 42.2 2.1 18 174-191 77-94 (516)
409 2dgc_A Protein (GCN4); basic d 28.2 1.7E+02 0.006 24.4 7.1 44 909-960 17-60 (63)
410 1e9r_A Conjugal transfer prote 28.0 15 0.0005 42.3 0.6 18 174-191 53-70 (437)
411 2dr3_A UPF0273 protein PH0284; 27.9 22 0.00075 36.7 1.9 27 166-192 12-41 (247)
412 2lw1_A ABC transporter ATP-bin 27.9 2E+02 0.0069 25.5 8.1 21 653-673 26-46 (89)
413 2pms_C Pneumococcal surface pr 27.8 4.1E+02 0.014 25.4 11.8 71 704-785 51-121 (125)
414 2qnr_A Septin-2, protein NEDD5 27.8 17 0.00058 39.9 1.0 24 168-191 12-35 (301)
415 3hhm_B NISH2 P85alpha; PI3KCA, 27.8 1.7E+02 0.0057 33.2 9.3 111 615-741 131-249 (373)
416 2w6a_A ARF GTPase-activating p 27.7 2.6E+02 0.0089 23.2 7.6 32 763-794 30-61 (63)
417 2zxx_A Geminin; coiled-coil, c 27.7 96 0.0033 27.4 5.5 26 775-800 35-60 (79)
418 3pxi_A Negative regulator of g 27.6 31 0.0011 42.8 3.5 42 143-192 178-219 (758)
419 3tr0_A Guanylate kinase, GMP k 27.5 17 0.00058 36.6 0.9 16 176-191 9-24 (205)
420 1gu4_A CAAT/enhancer binding p 27.5 1.1E+02 0.0037 27.0 5.9 30 821-850 41-70 (78)
421 3hhm_B NISH2 P85alpha; PI3KCA, 27.5 7E+02 0.024 28.1 15.7 53 782-848 199-251 (373)
422 3m9b_A Proteasome-associated A 27.5 41 0.0014 36.0 3.9 36 704-739 61-96 (251)
423 3lfu_A DNA helicase II; SF1 he 27.4 18 0.00061 43.7 1.2 20 173-192 21-40 (647)
424 1m1j_A Fibrinogen alpha subuni 27.2 7.8E+02 0.027 28.5 15.3 55 689-746 106-160 (491)
425 3s84_A Apolipoprotein A-IV; fo 27.2 6.1E+02 0.021 27.2 23.1 30 712-741 111-141 (273)
426 1jnm_A Proto-oncogene C-JUN; B 27.2 2.4E+02 0.0082 23.3 7.8 39 907-946 7-45 (62)
427 1lkx_A Myosin IE heavy chain; 27.0 31 0.0011 42.5 3.2 35 156-191 76-111 (697)
428 3he5_A Synzip1; heterodimeric 26.9 2.1E+02 0.0072 21.8 7.1 40 910-949 4-43 (49)
429 3e70_C DPA, signal recognition 26.8 35 0.0012 38.1 3.4 18 174-191 129-146 (328)
430 1r6b_X CLPA protein; AAA+, N-t 26.7 27 0.00092 43.3 2.7 28 165-192 198-225 (758)
431 3f1i_H Hepatocyte growth facto 26.6 3.7E+02 0.013 24.5 11.5 83 658-744 6-91 (98)
432 1kgd_A CASK, peripheral plasma 26.6 18 0.00061 36.1 0.9 16 176-191 7-22 (180)
433 3e1s_A Exodeoxyribonuclease V, 26.4 25 0.00084 42.4 2.2 26 165-192 197-222 (574)
434 2gza_A Type IV secretion syste 26.4 27 0.00092 39.4 2.4 21 169-191 172-192 (361)
435 1hjb_A Ccaat/enhancer binding 26.3 1.2E+02 0.004 27.3 6.0 41 773-813 35-75 (87)
436 3pxi_A Negative regulator of g 26.3 28 0.00097 43.1 2.8 17 175-191 522-538 (758)
437 2jlq_A Serine protease subunit 26.2 18 0.00063 41.9 1.0 25 166-191 12-36 (451)
438 1jnm_A Proto-oncogene C-JUN; B 26.2 1E+02 0.0036 25.5 5.4 31 772-802 20-50 (62)
439 1l8d_A DNA double-strand break 26.1 3.7E+02 0.013 24.4 12.1 38 808-845 63-100 (112)
440 3etw_A Adhesin A; antiparallel 26.1 4.3E+02 0.015 25.1 13.9 41 803-843 65-105 (119)
441 3ni0_A Bone marrow stromal ant 26.0 3.7E+02 0.013 24.4 10.3 59 715-794 29-87 (99)
442 1r6b_X CLPA protein; AAA+, N-t 25.9 32 0.0011 42.6 3.1 17 175-191 489-505 (758)
443 2og2_A Putative signal recogni 25.9 36 0.0012 38.5 3.3 17 175-191 158-174 (359)
444 2wjy_A Regulator of nonsense t 25.8 26 0.00088 44.0 2.3 25 166-192 365-389 (800)
445 2xzl_A ATP-dependent helicase 25.8 25 0.00085 44.2 2.1 25 166-192 369-393 (802)
446 1gm5_A RECG; helicase, replica 25.8 22 0.00076 44.5 1.7 27 165-191 380-406 (780)
447 1wle_A Seryl-tRNA synthetase; 25.7 6.3E+02 0.021 29.7 14.0 108 602-737 33-149 (501)
448 3iv1_A Tumor susceptibility ge 25.7 3.4E+02 0.012 23.8 9.1 18 444-461 14-31 (78)
449 1w9i_A Myosin II heavy chain; 25.7 34 0.0012 42.7 3.2 35 156-191 154-189 (770)
450 1gk7_A Vimentin; intermediate 25.6 1.3E+02 0.0045 22.9 5.3 20 821-840 18-37 (39)
451 4a4z_A Antiviral helicase SKI2 25.5 29 0.001 44.6 2.8 23 166-190 48-70 (997)
452 2yy0_A C-MYC-binding protein; 25.4 84 0.0029 25.6 4.5 29 774-802 19-47 (53)
453 1zp6_A Hypothetical protein AT 25.4 21 0.00073 35.4 1.2 17 175-191 10-26 (191)
454 2b8t_A Thymidine kinase; deoxy 25.4 16 0.00056 38.5 0.3 20 174-193 12-31 (223)
455 3trf_A Shikimate kinase, SK; a 25.4 21 0.00072 35.3 1.1 16 176-191 7-22 (185)
456 1fmh_A General control protein 25.4 1E+02 0.0036 21.7 4.2 27 713-739 3-29 (33)
457 1ly1_A Polynucleotide kinase; 25.3 21 0.00072 34.9 1.1 17 175-191 3-19 (181)
458 1wlq_A Geminin; coiled-coil; 2 25.3 3.3E+02 0.011 24.2 8.5 46 777-843 27-72 (83)
459 2akf_A Coronin-1A; coiled coil 25.3 1.2E+02 0.0041 21.5 4.5 26 716-741 4-29 (32)
460 1lwu_C Fibrinogen gamma chain; 25.1 1E+02 0.0035 34.3 6.7 53 689-741 4-56 (323)
461 1z60_A TFIIH basal transcripti 25.1 29 0.00099 29.0 1.7 35 1058-1093 17-58 (59)
462 2orw_A Thymidine kinase; TMTK, 24.9 14 0.00049 37.4 -0.2 18 176-193 5-22 (184)
463 2v26_A Myosin VI; calmodulin-b 24.9 35 0.0012 42.6 3.2 35 156-191 122-157 (784)
464 3iij_A Coilin-interacting nucl 24.9 20 0.00069 35.4 0.9 16 176-191 13-28 (180)
465 1ye8_A Protein THEP1, hypothet 24.9 19 0.00064 36.3 0.6 15 177-191 3-17 (178)
466 2oca_A DAR protein, ATP-depend 24.8 22 0.00077 41.4 1.4 23 168-192 124-146 (510)
467 3sop_A Neuronal-specific septi 24.6 21 0.00071 38.6 1.0 19 173-191 1-19 (270)
468 1qhx_A CPT, protein (chloramph 24.6 22 0.00076 34.8 1.1 17 175-191 4-20 (178)
469 1g8x_A Myosin II heavy chain f 24.3 36 0.0012 43.9 3.2 36 155-191 153-189 (1010)
470 3a00_A Guanylate kinase, GMP k 24.2 19 0.00067 36.0 0.6 15 177-191 4-18 (186)
471 2ocy_A RAB guanine nucleotide 24.0 5.3E+02 0.018 25.5 18.6 28 710-737 57-84 (154)
472 4a2q_A RIG-I, retinoic acid in 24.0 31 0.0011 43.0 2.6 24 166-191 257-280 (797)
473 1rj9_A FTSY, signal recognitio 24.0 23 0.00079 39.0 1.2 17 175-191 103-119 (304)
474 4a2w_A RIG-I, retinoic acid in 23.9 30 0.001 44.2 2.4 24 166-191 257-280 (936)
475 1lvg_A Guanylate kinase, GMP k 23.8 20 0.00069 36.5 0.6 16 176-191 6-21 (198)
476 1dh3_A Transcription factor CR 23.8 56 0.0019 26.7 3.2 34 815-848 21-54 (55)
477 3fpp_A Macrolide-specific effl 23.6 1.9E+02 0.0065 31.6 8.7 29 713-741 78-106 (341)
478 2ycu_A Non muscle myosin 2C, a 23.5 38 0.0013 43.5 3.3 35 156-191 128-163 (995)
479 3cl3_D NF-kappa-B essential mo 23.4 39 0.0013 32.3 2.4 49 692-740 4-52 (130)
480 2enz_A NPKC-theta, protein kin 23.4 15 0.00052 30.9 -0.3 38 1046-1087 13-50 (65)
481 1w7j_A Myosin VA; motor protei 23.3 40 0.0014 42.2 3.2 35 156-191 138-173 (795)
482 1kk8_A Myosin heavy chain, str 23.1 37 0.0013 42.8 2.9 35 156-191 151-186 (837)
483 2px0_A Flagellar biosynthesis 23.0 22 0.00076 38.9 0.8 18 175-192 106-123 (296)
484 2oqq_A Transcription factor HY 23.0 1.6E+02 0.0053 22.8 5.1 14 824-837 25-38 (42)
485 4db1_A Myosin-7; S1DC, cardiac 23.0 41 0.0014 42.0 3.2 35 156-191 153-188 (783)
486 2j41_A Guanylate kinase; GMP, 22.8 24 0.00081 35.5 0.9 16 176-191 8-23 (207)
487 4dk0_A Putative MACA; alpha-ha 22.8 1.7E+02 0.0057 32.4 8.1 28 714-741 80-107 (369)
488 1odf_A YGR205W, hypothetical 3 22.8 48 0.0016 36.1 3.5 37 155-191 10-48 (290)
489 1j8m_F SRP54, signal recogniti 22.8 59 0.002 35.6 4.2 17 176-192 100-116 (297)
490 1uaa_A REP helicase, protein ( 22.8 25 0.00086 42.9 1.3 20 173-192 14-33 (673)
491 1oyw_A RECQ helicase, ATP-depe 22.8 20 0.00069 42.5 0.4 25 165-191 33-57 (523)
492 2ga8_A Hypothetical 39.9 kDa p 22.7 45 0.0016 37.7 3.3 21 171-191 21-41 (359)
493 3uun_A Dystrophin; triple heli 22.6 4.1E+02 0.014 23.6 13.3 28 714-741 81-108 (119)
494 3r2p_A Apolipoprotein A-I; amp 22.5 3E+02 0.01 27.6 9.2 52 690-741 111-164 (185)
495 1uii_A Geminin; human, DNA rep 22.5 3.8E+02 0.013 23.8 8.3 30 817-846 47-76 (83)
496 2v6i_A RNA helicase; membrane, 22.4 30 0.001 39.8 1.8 16 176-191 4-19 (431)
497 2bdt_A BH3686; alpha-beta prot 22.2 24 0.00083 35.1 0.9 16 176-191 4-19 (189)
498 2ehv_A Hypothetical protein PH 22.2 24 0.00083 36.5 0.9 16 176-191 32-47 (251)
499 3lnc_A Guanylate kinase, GMP k 22.1 28 0.00095 36.1 1.4 16 176-191 29-44 (231)
500 3kta_A Chromosome segregation 22.1 24 0.00083 34.8 0.8 18 174-191 26-43 (182)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=7.8e-86 Score=754.39 Aligned_cols=342 Identities=39% Similarity=0.609 Sum_probs=290.3
Q ss_pred CCCCCEEEEEEeCCCChhhhccCCeEEEeec----CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001297 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYAD----GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~----~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G 172 (1105)
...++|+|+|||||+++.|...+...++..+ ...+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 3578999999999999999887766554433 2344332 4689999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCccccCCCC---CCCCchhHHHHHHHHhhccC-CCceEEEEEeeeeeecceeeeccCCCCCcccee
Q 001297 173 VNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR 248 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~G~~---~~~GIipra~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ir 248 (1105)
||+||||||||||||||||+|+. ..+|||||++++||+.+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 99999999999999999999965 45699999999999999754 467999999999999999999999988899999
Q ss_pred ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhc
Q 001297 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLS 327 (1105)
Q Consensus 249 ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~ 327 (1105)
+++ .|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.+... .....++|+
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~------ 235 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN--QKKLSGKLY------ 235 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT--CCEEEEEEE------
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC--CCEeEEEEE------
Confidence 998 57899999999999999999999999999999999999999999999999999876433 234567777
Q ss_pred cccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeee
Q 001297 328 VKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTV 404 (1105)
Q Consensus 328 ~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~I 404 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||
T Consensus 236 -----lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 310 (365)
T 2y65_A 236 -----LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICC 310 (365)
T ss_dssp -----EEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEE
T ss_pred -----EEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEe
Confidence 999999875 677899999999999999999999999999877899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHH
Q 001297 405 TPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKE 455 (1105)
Q Consensus 405 sP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~ 455 (1105)
||+..+++||++||+||+|||+|+|.|.+|+..+.+.++++|++|+..|+.
T Consensus 311 sP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 311 SPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred cCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888889888876653
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.2e-85 Score=750.91 Aligned_cols=340 Identities=32% Similarity=0.516 Sum_probs=300.4
Q ss_pred CCCCCEEEEEEeCCCChhhhccCCeEEEeecCC-EEEec-CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC
Q 001297 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRN-EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~i~~~-~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n 174 (1105)
+.+++|+|+|||||+++.|...+..+.+..++. .+... .....+.|.||+||+++++|++||+. +.|+|+++|+|||
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 457899999999999999987776655555444 33322 22345789999999999999999998 6999999999999
Q ss_pred eEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCC-ceEEEEEeeeeeecceeeeccCCCC---Cccceeec
Q 001297 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~p~~---~~l~ired 250 (1105)
+||||||||||||||||+|++.++|||||++++||..+..... ..|.|+|||+|||||+|||||+|.. ..+.|+++
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~ 160 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEEC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEEC
Confidence 9999999999999999999999999999999999999986554 6899999999999999999998753 57999999
Q ss_pred C-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccc
Q 001297 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVK 329 (1105)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~ 329 (1105)
+ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+... .....++|+
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~-------- 230 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIARGKLS-------- 230 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--CCEEEEEEE--------
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC--CcEEEEEEE--------
Confidence 8 56899999999999999999999999999999999999999999999999999876543 345667887
Q ss_pred cccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCC
Q 001297 330 TAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTP 406 (1105)
Q Consensus 330 ~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP 406 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||
T Consensus 231 ---lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 306 (369)
T 3cob_A 231 ---FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISP 306 (369)
T ss_dssp ---EEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECC
T ss_pred ---EEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCC
Confidence 999999875 67789999999999999999999999999865 69999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 407 ASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 461 (1105)
Q Consensus 407 ~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~l~ 461 (1105)
+..+++||++||+||+|||+|+|.|.+|... +||..||.+|..++
T Consensus 307 ~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 307 AESNLDETHNSLTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWK 351 (369)
T ss_dssp BGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864 45555655555443
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=8e-85 Score=746.26 Aligned_cols=340 Identities=37% Similarity=0.589 Sum_probs=285.0
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEe--ecCCEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHH
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~i~~~~~-----~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~ 168 (1105)
....++|+|+|||||+++.|...+...++. .+...+.+... ...+.|.||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 456789999999999999998777654443 33445544321 24578999999999999999999999999999
Q ss_pred HhcCCCeEEEEeccCCCCCccccCCCCC---CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC-Cc
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QN 244 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm~G~~~---~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~-~~ 244 (1105)
+|+|||+||||||||||||||||+|+.. .+|||||++++||..+...++..|.|+|||+|||||+|||||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 9999999999999999999999999754 5699999999999999988888999999999999999999999864 67
Q ss_pred cceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC-CcceEeeeeeh
Q 001297 245 LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGVIFSQLVR 322 (1105)
Q Consensus 245 l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~~~~~s~l~~ 322 (1105)
+.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+.+.. ......++|+
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~- 255 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN- 255 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEE-
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEE-
Confidence 9999998 578999999999999999999999999999999999999999999999999998764322 2345677887
Q ss_pred hhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccce
Q 001297 323 WFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 399 (1105)
Q Consensus 323 ~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~ 399 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+
T Consensus 256 ----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 325 (372)
T 3b6u_A 256 ----------LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTV 325 (372)
T ss_dssp ----------EEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEE
T ss_pred ----------EEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEE
Confidence 999999875 6778999999999999999999999999998878999999999999999999999999
Q ss_pred eEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHH
Q 001297 400 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQ 447 (1105)
Q Consensus 400 mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~ 447 (1105)
|||||||+..+++||++||+||+|||+|+|.|.+|+... ..++++|+
T Consensus 326 mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~-~~~~~~~~ 372 (372)
T 3b6u_A 326 MVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPK-DALLREFQ 372 (372)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChH-HHHHHhcC
Confidence 999999999999999999999999999999999998543 34565553
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-85 Score=749.20 Aligned_cols=346 Identities=32% Similarity=0.498 Sum_probs=254.6
Q ss_pred CCCCCCCEEEEEEeCCCChhhhccCCeE-EEeecCCEEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001297 95 PQRSGDSISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1105)
Q Consensus 95 ~~~~~~~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~i~~~~---~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l 170 (1105)
.....++|+|+|||||+++.|...+... +...++..+.+.. ......|.||+||+++++|++||+.++.|+|+++|
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 95 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLL 95 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHT
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhh
Confidence 3455789999999999999997654433 3334444433221 12346799999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc----CCCceEEEEEeeeeeecceeeeccCCCCCccc
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD----TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR 246 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~----~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ 246 (1105)
+|||+||||||||||||||||+|++.++|||||++.+||+.+.. ..+..|.|+|||+|||||+|||||+|....+.
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ 175 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCC
T ss_pred cCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCce
Confidence 99999999999999999999999999999999999999999864 34568999999999999999999999988999
Q ss_pred eeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhh
Q 001297 247 VREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFF 325 (1105)
Q Consensus 247 ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~ 325 (1105)
|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++...... .....++|+
T Consensus 176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~skL~---- 250 (388)
T 3bfn_A 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP-FRQREGKLY---- 250 (388)
T ss_dssp CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-CCEEEEEEE----
T ss_pred EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-CceeEEEEE----
Confidence 99998 578999999999999999999999999999999999999999999999999998754332 234567777
Q ss_pred hccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEe
Q 001297 326 LSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 402 (1105)
Q Consensus 326 ~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~ 402 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||
T Consensus 251 -------lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa 322 (388)
T 3bfn_A 251 -------LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIA 322 (388)
T ss_dssp -------EEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEE
T ss_pred -------EEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEE
Confidence 999999875 67789999999999999999999999999875 5999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001297 403 TVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELD 458 (1105)
Q Consensus 403 ~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~ 458 (1105)
||||+..+++||++||+||+|||+|+|+|.+|+..+...+. ++..++++|.
T Consensus 323 ~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~-----~~k~~~~~l~ 373 (388)
T 3bfn_A 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALG-----PVKLSQKELL 373 (388)
T ss_dssp EECCSGGGHHHHHHHHHHHCSEEEEC------------------------------
T ss_pred EECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHH-----HHHHHHHHhh
Confidence 99999999999999999999999999999999987776442 3444445554
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.7e-84 Score=739.60 Aligned_cols=327 Identities=37% Similarity=0.593 Sum_probs=270.8
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEe--ecCCEEEecC----------CCCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNE----------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~i~~~~----------~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV 166 (1105)
.++|+|+|||||++++|...+...++. .++..+.+.. ....+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 578999999999999998776644333 3344444432 1245789999999999999999999999999
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhc-cCCCceEEEEEeeeeeecceeeeccCCCCCcc
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQ-DTPGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~-~~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l 245 (1105)
+++|+|||+||||||||||||||||+|+..++|||||++++||+.+. ..++..|.|+|||+|||||+|||||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 99999999999999999999999999999999999999999999997 455679999999999999999999984 4579
Q ss_pred ceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhh
Q 001297 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF 324 (1105)
Q Consensus 246 ~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~ 324 (1105)
.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+..........++|+
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~--- 238 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLN--- 238 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEE---
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEE---
Confidence 999998 5789999999999999999999999999999999999999999999999999987655444445678888
Q ss_pred hhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeE
Q 001297 325 FLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 401 (1105)
Q Consensus 325 ~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI 401 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+||
T Consensus 239 --------lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI 309 (350)
T 2vvg_A 239 --------LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMC 309 (350)
T ss_dssp --------EEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEE
T ss_pred --------EEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEE
Confidence 999999875 67789999999999999999999999999976 699999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Q 001297 402 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIID 438 (1105)
Q Consensus 402 ~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~ 438 (1105)
|||||+..+++||++||+||+|||+|+|+|.+|+..+
T Consensus 310 ~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 310 ANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhccccceecCCch
Confidence 9999999999999999999999999999999998544
No 6
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-84 Score=739.83 Aligned_cols=326 Identities=45% Similarity=0.738 Sum_probs=289.1
Q ss_pred CCCEEEEEEeCCCChhhhccCCe--EEEeecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeE
Q 001297 99 GDSISVTIRFRPLSEREFQRGDE--IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~--~~~~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~t 176 (1105)
.++|+|+|||||++++|...+.. +.|..++..+... ...+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999765543 4566666666543 3457899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCCC--CccceeecC-CC
Q 001297 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDA-QG 253 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~~--~~l~ired~-~g 253 (1105)
|||||||||||||||+|+.+++|||||++++||+.+...++..|.|+|||+|||||+|||||++.. .++.|++|+ .|
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999999999999999999999999988889999999999999999999998753 579999998 57
Q ss_pred cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC---CcceEeeeeehhhhhcccc
Q 001297 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE---YDGVIFSQLVRWFFLSVKT 330 (1105)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~---~~~~~~s~l~~~~~~~~~~ 330 (1105)
+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...... .+....++|+
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~--------- 231 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLN--------- 231 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEE---------
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEE---------
Confidence 8999999999999999999999999999999999999999999999999998765432 1235667777
Q ss_pred ccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCC-CCcccCCCCccchhcccCCCCCccceeEeeeCC
Q 001297 331 AYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTP 406 (1105)
Q Consensus 331 ~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k-~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP 406 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++|+|||||||
T Consensus 232 --lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 309 (349)
T 1t5c_A 232 --LVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP 309 (349)
T ss_dssp --EEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECT
T ss_pred --EEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 999999876 66789999999999999999999999999875 369999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccccccccccCH
Q 001297 407 ASSSMEETHNTLKFASRAKRVEIYASRNKIIDE 439 (1105)
Q Consensus 407 ~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~ 439 (1105)
+ +++||++||+||+|||+|+|.|.+|+..+.
T Consensus 310 ~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 310 V--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp T--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred C--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 6 589999999999999999999999987654
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.7e-84 Score=738.78 Aligned_cols=330 Identities=39% Similarity=0.600 Sum_probs=300.1
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeE
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~t 176 (1105)
..++|+|+|||||+++.|...+...++. .++..+........+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 4689999999999999998777654443 444555555555677899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCccccCCC----CCCCCchhHHHHHHHHhhccC-CCceEEEEEeeeeeecceeeeccCCCCCccceeecC
Q 001297 177 VFAYGVTSSGKTHTMHGD----QNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~G~----~~~~GIipra~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~ 251 (1105)
|||||||||||||||+|+ +..+|||||++++||..|... .+..|.|+|||+|||||+|||||+|....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 999999999999999996 466899999999999999764 456899999999999999999999998899999998
Q ss_pred -CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcccc
Q 001297 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKT 330 (1105)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~ 330 (1105)
.|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+... +....++|+
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~--------- 232 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET--GSAKSGQLF--------- 232 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT--TEEEEEEEE---------
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC--CceeeeEEE---------
Confidence 57899999999999999999999999999999999999999999999999999876433 345567777
Q ss_pred ccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCC
Q 001297 331 AYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 407 (1105)
Q Consensus 331 ~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~ 407 (1105)
||||||+++ +++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+
T Consensus 233 --lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~ 310 (355)
T 1goj_A 233 --LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPS 310 (355)
T ss_dssp --EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCB
T ss_pred --EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcc
Confidence 999999875 677899999999999999999999999999887899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccccccccccCHH
Q 001297 408 SSSMEETHNTLKFASRAKRVEIYASRNKIIDEK 440 (1105)
Q Consensus 408 ~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~~~ 440 (1105)
..+++||++||+||+|||+|+|+|.+|+..+..
T Consensus 311 ~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 311 SYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred cccHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 999999999999999999999999999876653
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.6e-84 Score=756.93 Aligned_cols=328 Identities=37% Similarity=0.588 Sum_probs=276.5
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEeecCC--EEEecC----------------CCCCcceeeceecCCC------
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE----------------YNPATAYAFDRVFGPH------ 151 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~i~~~~----------------~~~~~~f~FD~VF~~~------ 151 (1105)
.+.+++|+|+|||||++++|...+..+++..++. .+.+.. ....+.|.||+|||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 4567899999999999999988777666655432 222111 1135789999999864
Q ss_pred -CChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC----CCceEEEEEee
Q 001297 152 -ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT----PGREFLLRVSY 226 (1105)
Q Consensus 152 -~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~----~~~~~~v~vS~ 226 (1105)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..|... ++..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999753 56799999999
Q ss_pred eeeecceeeeccCCC-----CCccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEE
Q 001297 227 LEIYNEVINDLLDPT-----GQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1105)
Q Consensus 227 lEIYnE~i~DLL~p~-----~~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~ 300 (1105)
+|||||+|||||+|. ...|.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999873 2359999998 6789999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCC--CCcceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCC-
Q 001297 301 LMIESSDHGD--EYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA- 374 (1105)
Q Consensus 301 I~v~~~~~~~--~~~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~- 374 (1105)
|+|++..... .......++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~-----------lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~ 342 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIR-----------LVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSS 342 (443)
T ss_dssp EEEEEEC-------CCEEEEEEE-----------EEECCCCCC--------------CCSSHHHHHHHHHHHHHCC----
T ss_pred EEEEEeecccCCCCcceEEEEEE-----------EEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccc
Confidence 9998865322 22334567777 999999875 677899999999999999999999999987542
Q ss_pred --------------------CcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001297 375 --------------------SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 434 (1105)
Q Consensus 375 --------------------~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n 434 (1105)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|.+|
T Consensus 343 ~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN 420 (443)
T 2owm_A 343 ASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVN 420 (443)
T ss_dssp ---------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCC
T ss_pred ccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceec
Confidence 399999999999999999999999999999996 6999999999999999999999999
Q ss_pred cc
Q 001297 435 KI 436 (1105)
Q Consensus 435 ~~ 436 (1105)
++
T Consensus 421 ~~ 422 (443)
T 2owm_A 421 QV 422 (443)
T ss_dssp CC
T ss_pred cc
Confidence 84
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.8e-83 Score=734.92 Aligned_cols=326 Identities=38% Similarity=0.598 Sum_probs=277.4
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCC----CCCcceeeceecCCC--------CChhHHHhhhhHHHH
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----NPATAYAFDRVFGPH--------ANSQEVYDVAARPVV 166 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~----~~~~~f~FD~VF~~~--------~tq~~Vy~~~~~plV 166 (1105)
.++|+|+|||||++++|...+..+++..++..+.+... ...+.|.||+|||++ ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999999888777777666665544322 235689999999987 899999999999999
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccCCCC--CCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCCCC
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG 242 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~G~~--~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p~~ 242 (1105)
+++|+|||+||||||||||||||||+|+. .++|||||++++||..|... .+..|.|+|||+|||||+|||||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999999764 356899999999999999999999864
Q ss_pred -CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC--CcceEee
Q 001297 243 -QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE--YDGVIFS 318 (1105)
Q Consensus 243 -~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~--~~~~~~s 318 (1105)
..+.|++++ .|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...... ......+
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 579999999 589999999999999999999999999999999999999999999999999987654322 2234567
Q ss_pred eeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC-----------CCCcccCCCCcc
Q 001297 319 QLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----------KASHVPYRDSKL 384 (1105)
Q Consensus 319 ~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~-----------k~~hvPyRdSkL 384 (1105)
+|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||
T Consensus 243 kL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkL 311 (366)
T 2zfi_A 243 KIS-----------LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVL 311 (366)
T ss_dssp EEE-----------EEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHH
T ss_pred EEE-----------EEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHH
Confidence 777 999999875 6778999999999999999999999999873 356999999999
Q ss_pred chhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001297 385 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 435 (1105)
Q Consensus 385 TrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~ 435 (1105)
||||||+|||||+|+|||||||+..+++||++||+||+|||+|+|.|.++.
T Consensus 312 T~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 312 TWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999999999999998875
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1e-82 Score=727.51 Aligned_cols=320 Identities=35% Similarity=0.573 Sum_probs=257.7
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecC---------------------CCCCcceeeceecCCCCC
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNE---------------------YNPATAYAFDRVFGPHAN 153 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~---------------------~~~~~~f~FD~VF~~~~t 153 (1105)
++.+++|+|+|||||++.+|...+...++. .++..++... ..+...|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 456789999999999999998877654443 3444333221 123457999999999999
Q ss_pred hhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccCC-CceEEEEEeeeeeecc
Q 001297 154 SQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNE 232 (1105)
Q Consensus 154 q~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~~-~~~~~v~vS~lEIYnE 232 (1105)
|++||+.++.|+|+++|+|||+||||||||||||||||+|+..++|||||++.+||..+.+.. ...|.|.|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998653 5689999999999999
Q ss_pred eeeeccCCCCCccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCC
Q 001297 233 VINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE 311 (1105)
Q Consensus 233 ~i~DLL~p~~~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 311 (1105)
+|+|||++. .++.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.+....
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 479999998 689999999999999999999999999999999999999999999999999998765432
Q ss_pred -CcceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCC--CCcccCCCCccc
Q 001297 312 -YDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLT 385 (1105)
Q Consensus 312 -~~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k--~~hvPyRdSkLT 385 (1105)
...+..++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ ..||||||||||
T Consensus 245 ~~~~~~~skl~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT 313 (355)
T 3lre_A 245 INQNVRIAKMS-----------LIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLT 313 (355)
T ss_dssp TTCCCCCEEEE-----------EEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHH
T ss_pred CCCCEEEEEEE-----------EEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHH
Confidence 2335567777 999999875 67788999999999999999999999999854 469999999999
Q ss_pred hhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 386 RLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 386 rLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
|||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 314 ~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 314 RLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=7.7e-83 Score=720.47 Aligned_cols=312 Identities=43% Similarity=0.673 Sum_probs=284.1
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEE-eecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeE
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~t 176 (1105)
.+++|+|+|||||++++|...+...++ ..++..+... .+.|.||+||+++++|++||+.+++|+|+++|+|||+|
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~t 80 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT 80 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEE
Confidence 468999999999999999877765443 3445555543 46899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCccccCCCCCC---CCchhHHHHHHHHhhcc-CCCceEEEEEeeeeeecceeeeccCCCCCccceeecC-
Q 001297 177 VFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA- 251 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~G~~~~---~GIipra~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~ired~- 251 (1105)
|||||||||||||||+|+..+ +|||||++++||+.|.. .++..|.|+|||+|||||+|||||++....+.|++++
T Consensus 81 ifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~ 160 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKN 160 (325)
T ss_dssp EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTT
T ss_pred EEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECCC
Confidence 999999999999999997544 59999999999999965 4567999999999999999999999988999999998
Q ss_pred CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhccccc
Q 001297 252 QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSVKTA 331 (1105)
Q Consensus 252 ~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~ 331 (1105)
.|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+... .....++|+
T Consensus 161 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skl~---------- 228 (325)
T 1bg2_A 161 RVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT--EQKLSGKLY---------- 228 (325)
T ss_dssp SCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--CCEEEEEEE----------
T ss_pred CCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--CcEEEEEEE----------
Confidence 57899999999999999999999999999999999999999999999999999876543 234567777
Q ss_pred cccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCC
Q 001297 332 YLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPAS 408 (1105)
Q Consensus 332 ~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~ 408 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+.
T Consensus 229 -lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~ 306 (325)
T 1bg2_A 229 -LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSS 306 (325)
T ss_dssp -EEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBG
T ss_pred -EEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCcc
Confidence 999999875 67789999999999999999999999999874 6999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 001297 409 SSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 409 ~~~~ETlsTL~fA~rak~I 427 (1105)
.+++||++||+||+|||+|
T Consensus 307 ~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 307 YNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp GGHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHHHHHHhccC
Confidence 9999999999999999987
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=5.1e-83 Score=731.01 Aligned_cols=326 Identities=36% Similarity=0.571 Sum_probs=272.8
Q ss_pred CCCCCEEEEEEeCCCChhhhccCCeEEEee--cCCEEEecC-----CCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNE-----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~--~~~~i~~~~-----~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
+.+++|+|+|||||+++.|...+...++.. +...+.+.. ....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456899999999999999987765544433 333333221 1234689999999999999999999999999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeecc
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL 238 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~~-----------~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL 238 (1105)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|||||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999999764 369999999999999975 56799999999999999999999
Q ss_pred CCCC---CccceeecC---CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC-C
Q 001297 239 DPTG---QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1105)
Q Consensus 239 ~p~~---~~l~ired~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-~ 311 (1105)
+|.. ..+.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+...... +
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 243 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence 9864 468999997 47899999999999999999999999999999999999999999999999998754322 2
Q ss_pred CcceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhc
Q 001297 312 YDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL 388 (1105)
Q Consensus 312 ~~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLL 388 (1105)
......++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||||
T Consensus 244 ~~~~~~skL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL 311 (359)
T 1x88_A 244 EELVKIGKLN-----------LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRIL 311 (359)
T ss_dssp CEEEEEEEEE-----------EEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHT
T ss_pred CceEEEEEEE-----------EEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHH
Confidence 2334567787 999999875 67789999999999999999999999999854 69999999999999
Q ss_pred ccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001297 389 QSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 435 (1105)
Q Consensus 389 qdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~ 435 (1105)
||+||||++|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 312 qdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 312 QDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp GGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999999999999986
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=7.2e-82 Score=718.84 Aligned_cols=318 Identities=37% Similarity=0.610 Sum_probs=262.4
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhccCCeEEE--eecCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001297 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAW--YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1105)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~--~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~ 171 (1105)
.+....++|+|+|||||++++|...+...++ .++...+.. ...+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp ----CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE---TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe---cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 3445578999999999999999876654333 233334433 24578999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCccccCCC------CCCCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCC--CC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT--GQ 243 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~G~------~~~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~--~~ 243 (1105)
|||+||||||||||||||||+|+ .+++|||||++++||+.+.+.+...|.|+|||+|||||+|||||++. ..
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 99999999999999999999997 46799999999999999998888999999999999999999999864 46
Q ss_pred ccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCC------CCcceE
Q 001297 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EYDGVI 316 (1105)
Q Consensus 244 ~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~------~~~~~~ 316 (1105)
.+.|++++ .|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++..... ......
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 79999998 57899999999999999999999999999999999999999999999999999875322 123455
Q ss_pred eeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcC--CCCcccCCCCccchhcccC
Q 001297 317 FSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSS 391 (1105)
Q Consensus 317 ~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~--k~~hvPyRdSkLTrLLqds 391 (1105)
.++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+
T Consensus 242 ~skl~-----------lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 242 VSKFH-----------FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp EEEEE-----------EEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTS
T ss_pred eeeee-----------EEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhh
Confidence 67777 999999875 6788999999999999999999999999975 3469999999999999999
Q ss_pred CCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhc
Q 001297 392 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 425 (1105)
Q Consensus 392 LgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak 425 (1105)
|||||+|+|||||||+..+++||++||+||+|||
T Consensus 311 LgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999999999999997
No 14
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-82 Score=727.32 Aligned_cols=330 Identities=37% Similarity=0.602 Sum_probs=277.4
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEE-eecCCEEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~i~~~~---~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~ 171 (1105)
....++|+|+|||||+++.|...+...++ ..++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 34578999999999999999765543333 34445554432 234578999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP 240 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~G~~~-----------~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p 240 (1105)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... +..|.|+|||+|||||+|||||++
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 177 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLST 177 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCT
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCC
Confidence 9999999999999999999999754 6799999999999999754 468999999999999999999987
Q ss_pred CC-CccceeecC---CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCC-cce
Q 001297 241 TG-QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY-DGV 315 (1105)
Q Consensus 241 ~~-~~l~ired~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~-~~~ 315 (1105)
.. ..+.+++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+....+... ...
T Consensus 178 ~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 257 (373)
T 2wbe_C 178 DDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML 257 (373)
T ss_dssp TSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEE
T ss_pred CCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcce
Confidence 64 568888884 3589999999999999999999999999999999999999999999999999987644322 334
Q ss_pred Eeeeeehhhhhccccccccccccccc---cccc-cccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccC
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESSK---TETT-GLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS 391 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~-g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqds 391 (1105)
..++|+ ||||||+++ +++. |.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+
T Consensus 258 ~~skL~-----------lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqds 325 (373)
T 2wbe_C 258 KIGKLN-----------LVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQES 325 (373)
T ss_dssp EEEEEE-----------EEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHH
T ss_pred eEEEEE-----------EEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHH
Confidence 567887 999999986 4444 8999999999999999999999999854 69999999999999999
Q ss_pred CCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Q 001297 392 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIID 438 (1105)
Q Consensus 392 LgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~~ 438 (1105)
|||||+|+|||||||+..+++||++||+||+|||+|+|+|.+|+..+
T Consensus 326 LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 326 LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp HHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 99999999999999999999999999999999999999999998643
No 15
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-82 Score=719.16 Aligned_cols=317 Identities=34% Similarity=0.533 Sum_probs=259.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEec-----------CCCCCcceeeceecCCCCChhHHHhhhhHH
Q 001297 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRN-----------EYNPATAYAFDRVFGPHANSQEVYDVAARP 164 (1105)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~-----------~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~p 164 (1105)
...+++|+|+|||||+.+.|.. .+.+..++..+.+. .......|.||+||+ +++|++||+.+++|
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 3557899999999999866532 22233333333322 122345799999997 58999999999999
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccCCCCC---CCCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccCCC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~---~~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~p~ 241 (1105)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+...++..|.|+|||+|||||+|||||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccc
Confidence 99999999999999999999999999999764 479999999999999998889999999999999999999999853
Q ss_pred ------CCccceeecCCCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcce
Q 001297 242 ------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315 (1105)
Q Consensus 242 ------~~~l~ired~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 315 (1105)
...+.+++++.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|............
T Consensus 176 ~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~ 255 (359)
T 3nwn_A 176 PYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY 255 (359)
T ss_dssp TTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CC
T ss_pred cccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccc
Confidence 34678899999999999999999999999999999999999999999999999999999999887655544556
Q ss_pred Eeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCC
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSL 392 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsL 392 (1105)
..++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|
T Consensus 256 ~~skL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsL 324 (359)
T 3nwn_A 256 ITSKIN-----------LVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSL 324 (359)
T ss_dssp EEEEEE-----------EEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHH
T ss_pred ccccce-----------eeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhc
Confidence 678888 999999875 678899999999999999999999999999888899999999999999999
Q ss_pred CCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 393 SGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 393 gGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 gGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 325 GGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999987
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.7e-81 Score=717.26 Aligned_cols=316 Identities=38% Similarity=0.608 Sum_probs=259.5
Q ss_pred CEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCC----------CCCcceeeceecC--------CCCChhHHHhhhh
Q 001297 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----------NPATAYAFDRVFG--------PHANSQEVYDVAA 162 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~----------~~~~~f~FD~VF~--------~~~tq~~Vy~~~~ 162 (1105)
+|+|+|||||++++|...+..+++..++..++.... ...+.|.||+||| +.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 799999999999999888877777777776655321 2357899999994 5678999999999
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc--CCCceEEEEEeeeeeecceeeeccCC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~p 240 (1105)
.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+.. ..+..|.|+|||+|||||+|+|||+|
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCC
Confidence 9999999999999999999999999999999999999999999999999863 35678999999999999999999998
Q ss_pred CC--CccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCC--CCCcce
Q 001297 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEYDGV 315 (1105)
Q Consensus 241 ~~--~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~--~~~~~~ 315 (1105)
.+ ..+.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+.... ......
T Consensus 162 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 241 (354)
T 3gbj_A 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241 (354)
T ss_dssp -----CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEE
T ss_pred CCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCe
Confidence 63 579999998 5899999999999999999999999999999999999999999999999999875322 222345
Q ss_pred Eeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhc-----CCCCcccCCCCccchh
Q 001297 316 IFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRL 387 (1105)
Q Consensus 316 ~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~-----~k~~hvPyRdSkLTrL 387 (1105)
..++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++ ++..||||||||||||
T Consensus 242 ~~skL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~l 310 (354)
T 3gbj_A 242 KVGKLS-----------LVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWL 310 (354)
T ss_dssp EEEEEE-----------EEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHH
T ss_pred eEEEEE-----------EEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHH
Confidence 567777 999999875 667889999999999999999999999986 3457999999999999
Q ss_pred cccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 388 LQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 388 LqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
|||+|||||+|+|||||||+..+++||++||+||.||+.-
T Consensus 311 LqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 311 LKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp THHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999864
No 17
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.6e-81 Score=717.20 Aligned_cols=319 Identities=34% Similarity=0.527 Sum_probs=261.8
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecC-----------CCCCcceeeceecCCCCChhHHHhhhh
Q 001297 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE-----------YNPATAYAFDRVFGPHANSQEVYDVAA 162 (1105)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~-----------~~~~~~f~FD~VF~~~~tq~~Vy~~~~ 162 (1105)
.+.+.+|+|+|+|||||+.+.+. ..+.+..++..+.... ......|.||+||+ +++|++||+.++
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 44567899999999999875432 2334444555543321 12235699999995 889999999999
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCC---CCchhHHHHHHHHhhccCCCceEEEEEeeeeeecceeeeccC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLD 239 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~---~GIipra~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1105)
+|+|+++|+|||+||||||||||||||||+|+..+ +|||||++++||+.+++.++..|.|+|||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999999998765 899999999999999988888999999999999999999998
Q ss_pred CC------CCccceeecCCCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCc
Q 001297 240 PT------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1105)
Q Consensus 240 p~------~~~l~ired~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~ 313 (1105)
+. ..++.|++++.|+||.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|++........
T Consensus 173 ~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 252 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 252 (358)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred CccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC
Confidence 63 357999999999999999999999999999999999999999999999999999999999999876544444
Q ss_pred ceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhccc
Q 001297 314 GVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQS 390 (1105)
Q Consensus 314 ~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqd 390 (1105)
....++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||
T Consensus 253 ~~~~skL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqd 321 (358)
T 2nr8_A 253 KYITSKIN-----------LVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKD 321 (358)
T ss_dssp CCEEEEEE-----------EEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHH
T ss_pred CEEEEEEE-----------EEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHH
Confidence 55678888 999999875 6778899999999999999999999999998778999999999999999
Q ss_pred CCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 391 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 391 sLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 322 sLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 322 SLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred hcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999986
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.9e-81 Score=705.94 Aligned_cols=316 Identities=35% Similarity=0.527 Sum_probs=269.7
Q ss_pred CCCCEEEEEEeCCCChhhhccCC---eEEEeecC-CEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001297 98 SGDSISVTIRFRPLSEREFQRGD---EIAWYADG-DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~---~~~~~~~~-~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~ 173 (1105)
.+++|+|+|||||+++.|...+. .+.+..++ ..+........+.|.||+||+++++|++||+. +.|+|+++|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCC
Confidence 46899999999999998864322 23343333 33433333445789999999999999999997 589999999999
Q ss_pred CeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC-CCceEEEEEeeeeeecceeeeccCCCC-Ccccee--e
Q 001297 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR--E 249 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~p~~-~~l~ir--e 249 (1105)
|+||||||||||||||||+|+..++|||||++++||..++.. ++..|.|+|||+|||||+|||||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999999999999999999999999754 456899999999999999999998754 345555 5
Q ss_pred cC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhhhhcc
Q 001297 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWFFLSV 328 (1105)
Q Consensus 250 d~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~~~~~ 328 (1105)
++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.+... +....++|+
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~------- 231 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST--GLRTTGKLN------- 231 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT--TEEEEEEEE-------
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC--CcEEEEEEE-------
Confidence 65 57899999999999999999999999999999999999999999999999999876433 334567777
Q ss_pred ccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeC
Q 001297 329 KTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVT 405 (1105)
Q Consensus 329 ~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~Is 405 (1105)
||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+||||||
T Consensus 232 ----lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~is 306 (330)
T 2h58_A 232 ----LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVS 306 (330)
T ss_dssp ----EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEEC
T ss_pred ----EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeC
Confidence 999999875 67789999999999999999999999999854 6999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccc
Q 001297 406 PASSSMEETHNTLKFASRAKRVE 428 (1105)
Q Consensus 406 P~~~~~~ETlsTL~fA~rak~I~ 428 (1105)
|+..+++||++||+||+|||+|+
T Consensus 307 P~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 307 PVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp CBGGGHHHHHHHHHHHHHHC---
T ss_pred CccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999986
No 19
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=6.4e-80 Score=715.07 Aligned_cols=326 Identities=32% Similarity=0.510 Sum_probs=268.9
Q ss_pred CCCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCCC-------CCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYN-------PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~~-------~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
+.+|+|+|+|||||+.+.|...+...+...++.++.+.... ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 56 ~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~ 134 (412)
T 3u06_A 56 DLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSA 134 (412)
T ss_dssp HHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred HhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHH
Confidence 34789999999999999997665545555666665543221 24679999999999999999985 56999999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCCCCCccce
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p~~~~l~i 247 (1105)
|+|||+||||||||||||||||+|+++++|||||++++||..|... .+..|.|+|||+|||||.|+|||++....+.|
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i 214 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 214 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCE
T ss_pred HCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCcee
Confidence 9999999999999999999999999999999999999999999753 46799999999999999999999988776666
Q ss_pred e--ecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeehhh
Q 001297 248 R--EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVRWF 324 (1105)
Q Consensus 248 r--ed~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~~~ 324 (1105)
+ +++ .|+||.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+.+... .....++|+
T Consensus 215 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~kL~--- 289 (412)
T 3u06_A 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK--QEISVGSIN--- 289 (412)
T ss_dssp EECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT--TEEEEEEEE---
T ss_pred eeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC--CCEEEEEEE---
Confidence 6 444 57999999999999999999999999999999999999999999999999998876433 345567777
Q ss_pred hhccccccccccccccccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeee
Q 001297 325 FLSVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTV 404 (1105)
Q Consensus 325 ~~~~~~~~lvDLa~s~k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~I 404 (1105)
||||||+++. ..|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||
T Consensus 290 --------lVDLAGSEr~-~~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~v 359 (412)
T 3u06_A 290 --------LVDLAGSESP-KTSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 359 (412)
T ss_dssp --------EEECCCCCC-----------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEE
T ss_pred --------EEECCCCCcC-CccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEe
Confidence 9999999976 46889999999999999999999999985 4699999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccccc-ccccccccC
Q 001297 405 TPASSSMEETHNTLKFASRAKRVEI-YASRNKIID 438 (1105)
Q Consensus 405 sP~~~~~~ETlsTL~fA~rak~I~~-~~~~n~~~~ 438 (1105)
||+..+++||++||+||+|++.|+. .+++|.+.+
T Consensus 360 sP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~~~ 394 (412)
T 3u06_A 360 SPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 394 (412)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCChhhHHHHHHHHHHHHHHhhcccccccccccCC
Confidence 9999999999999999999999984 455555443
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-80 Score=708.01 Aligned_cols=318 Identities=33% Similarity=0.477 Sum_probs=248.1
Q ss_pred CCCCCCCEEEEEEeCCCChhhhccCCe-EEEe-------ecCCEEEecC-------------CCCCcceeeceecCCCCC
Q 001297 95 PQRSGDSISVTIRFRPLSEREFQRGDE-IAWY-------ADGDKIVRNE-------------YNPATAYAFDRVFGPHAN 153 (1105)
Q Consensus 95 ~~~~~~~I~V~vRvRP~~~~E~~~~~~-~~~~-------~~~~~i~~~~-------------~~~~~~f~FD~VF~~~~t 153 (1105)
..+.+++|+|+|||||+++.|...+.. +.+. .++..+.... ....+.|.||+||+++++
T Consensus 17 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~ 96 (376)
T 2rep_A 17 RGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSG 96 (376)
T ss_dssp ------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCC
T ss_pred hhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCccc
Confidence 346689999999999999999765432 1111 1223333221 123457999999999999
Q ss_pred hhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCCCCC----CCCchhHHHHHHHHhhccC--CCceEEEEEeee
Q 001297 154 SQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN----SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYL 227 (1105)
Q Consensus 154 q~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~----~~GIipra~~~LF~~i~~~--~~~~~~v~vS~l 227 (1105)
|++||+.+ .|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.+... .+..|.|+|||+
T Consensus 97 Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~ 175 (376)
T 2rep_A 97 QDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYV 175 (376)
T ss_dssp HHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEE
T ss_pred chhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEE
Confidence 99999985 5899999999999999999999999999999754 6899999999999999753 457899999999
Q ss_pred eeecceeeeccCCC-----CCccceeecC---CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEE
Q 001297 228 EIYNEVINDLLDPT-----GQNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIF 299 (1105)
Q Consensus 228 EIYnE~i~DLL~p~-----~~~l~ired~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If 299 (1105)
|||||+|||||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||
T Consensus 176 EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 255 (376)
T 2rep_A 176 EIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVF 255 (376)
T ss_dssp EEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEE
T ss_pred EEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEE
Confidence 99999999999875 2468899883 578999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcceEeeeeehhhhhccccccccccccccc---ccccc----ccccccchhhhcHHHHHHHHHHhhcC
Q 001297 300 TLMIESSDHGDEYDGVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTG----LRRKEGSYINKSLLTLGTVIGKLSEG 372 (1105)
Q Consensus 300 ~I~v~~~~~~~~~~~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g----~r~~E~~~INkSL~aLg~VI~aLs~~ 372 (1105)
+|.|++.+... +....++|+ ||||||+++ +++.| .|++|+.+||+||++||+||.+|+++
T Consensus 256 ti~v~~~~~~~--~~~~~skL~-----------lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~ 322 (376)
T 2rep_A 256 QLQISGEHSSR--GLQCGAPLS-----------LVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK 322 (376)
T ss_dssp EEEEEEEESSS--CCEEEEEEE-----------EEECCCCC------------------------CHHHHHHHHHHHHTT
T ss_pred EEEEEEEecCC--CcEEEeEEE-----------EEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC
Confidence 99999876543 234567777 999999886 56677 99999999999999999999999985
Q ss_pred CCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccc
Q 001297 373 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 427 (1105)
Q Consensus 373 k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I 427 (1105)
..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 323 -~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 323 -ESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp -CSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred -CCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999864
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.5e-80 Score=704.08 Aligned_cols=318 Identities=32% Similarity=0.479 Sum_probs=257.7
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEEe-ec---CC-EEEecCC---CCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-AD---GD-KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~---~~-~i~~~~~---~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
-+|+|+|+|||||+++.|...+..+.+. .+ +. .+.+... ...+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence 4789999999999999998776655553 11 22 2222211 1246799999999999999999974 6899999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCCCC-----
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG----- 242 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p~~----- 242 (1105)
|+|||+||||||||||||||||+|+ .+|||||++++||+.+... .+..|.|+|||+|||||+|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 4699999999999998753 356899999999999999999998643
Q ss_pred ------CccceeecC--CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcc
Q 001297 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1105)
Q Consensus 243 ------~~l~ired~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 314 (1105)
..+.|++++ .|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++.+... +.
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 237 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT--GE 237 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT--CC
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC--CC
Confidence 467888876 47999999999999999999999999999999999999999999999999999876543 23
Q ss_pred eEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCC--CcccCCCCccchhcc
Q 001297 315 VIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQ 389 (1105)
Q Consensus 315 ~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~--~hvPyRdSkLTrLLq 389 (1105)
...++|+ ||||||+++ ++++|.|++|+.+||+||++||+||.+|++++. .||||||||||||||
T Consensus 238 ~~~~kL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLq 306 (349)
T 3t0q_A 238 TSQGKLN-----------LVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQ 306 (349)
T ss_dssp EEEEEEE-----------EEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHG
T ss_pred eeEEEEE-----------EEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHH
Confidence 4567777 999999875 677899999999999999999999999987543 599999999999999
Q ss_pred cCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001297 390 SSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYA 431 (1105)
Q Consensus 390 dsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~ 431 (1105)
|+|||||+|+|||||||+..+++||++||+||+|+++|+..+
T Consensus 307 dsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 307 YSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp GGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999999999998653
No 22
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=6.4e-80 Score=707.51 Aligned_cols=312 Identities=35% Similarity=0.524 Sum_probs=254.4
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecCC----C-----CCcceeeceecCCCCChhHHHhhhhHHHHHH
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~~----~-----~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~ 168 (1105)
.++|+|+|||||+++.|...+...++. .+...+++... . ..+.|.||+||+++++|++||+.+++|+|++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 789999999999999998777654333 33444433211 1 2357999999999999999999999999999
Q ss_pred HhcCCCeEEEEeccCCCCCccccCCC------CCCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCC
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDP 240 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm~G~------~~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p 240 (1105)
+|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .+..|.|+|||+|||||+|||||++
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 99999999999999999999999996 356899999999999998753 3568999999999999999999997
Q ss_pred CCCccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeee
Q 001297 241 TGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1105)
Q Consensus 241 ~~~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~ 319 (1105)
. ..+.|++|+ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++.. ...++
T Consensus 210 ~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~sk 281 (387)
T 2heh_A 210 K-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-------RMHGK 281 (387)
T ss_dssp T-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS-------SEEEE
T ss_pred C-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC-------eeeeE
Confidence 5 479999998 57999999999999999999999999999999999999999999999999998652 35677
Q ss_pred eehhhhhccccccccccccccccc----cccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccC-CCC
Q 001297 320 LVRWFFLSVKTAYLFQLYESSKTE----TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSG 394 (1105)
Q Consensus 320 l~~~~~~~~~~~~lvDLa~s~k~~----~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqds-LgG 394 (1105)
|+ ||||||+++.. +.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||
T Consensus 282 L~-----------lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGg 349 (387)
T 2heh_A 282 FS-----------LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGE 349 (387)
T ss_dssp EE-----------EEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSST
T ss_pred EE-----------EEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCC
Confidence 77 99999998743 34678899999999999999999999985 469999999999999999 699
Q ss_pred CccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccc
Q 001297 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY 430 (1105)
Q Consensus 395 nskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~ 430 (1105)
||+|+|||||||+..+++||++||+||+|||+|++.
T Consensus 350 nskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 350 NSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999999764
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=9.4e-80 Score=703.02 Aligned_cols=319 Identities=29% Similarity=0.439 Sum_probs=265.3
Q ss_pred CEEEEEEeCCCChhhhccCCeE-EEeecCCEEEecCC---------CCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001297 101 SISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1105)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~i~~~~~---------~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l 170 (1105)
+|+|+|||||+++.|...+... +...++.++.+... ...+.|.||+||+++++|++||+.+++|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 6999999999999998776543 33345555543321 1235799999999999999999999999999999
Q ss_pred c-CCCeEEEEeccCCCCCccccCCCC-----CCCCchhHHHHHHHHhhcc-CCCceEEEEEeeeeeecceeeeccCCCCC
Q 001297 171 E-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1105)
Q Consensus 171 ~-G~n~tIfaYGqTGSGKTyTm~G~~-----~~~GIipra~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~p~~~ 243 (1105)
+ ||||||||||||||||||||+|+. ..+|||||++++||..+.. ..+..|.|+|||+|||||+|||||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999999974 6799999999999999975 3456899999999999999999998764
Q ss_pred ccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeeh
Q 001297 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVR 322 (1105)
Q Consensus 244 ~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~ 322 (1105)
.+.+++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++... ....++|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~skL~- 233 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK-----NTSLGKIA- 233 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT-----TEEEEEEE-
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC-----CcceeEEE-
Confidence 57788887 689999999999999999999999999999999999999999999999999987542 24567777
Q ss_pred hhhhccccccccccccccccc---ccc-ccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccc
Q 001297 323 WFFLSVKTAYLFQLYESSKTE---TTG-LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHV 398 (1105)
Q Consensus 323 ~~~~~~~~~~lvDLa~s~k~~---~~g-~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt 398 (1105)
||||||+++.. +.| .+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|
T Consensus 234 ----------lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt 302 (360)
T 1ry6_A 234 ----------FIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKS 302 (360)
T ss_dssp ----------EEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEE
T ss_pred ----------EEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeE
Confidence 99999998744 334 467899999999999999999998754 699999999999999999999999
Q ss_pred eeEeeeCCCCCCHHHHHHHHHHHHHhccccccccccccc
Q 001297 399 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKII 437 (1105)
Q Consensus 399 ~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~~~ 437 (1105)
+|||||||+..+++||++||+||+|||+|+|.+..|+.+
T Consensus 303 ~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~~ 341 (360)
T 1ry6_A 303 IMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPI 341 (360)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCCCC
Confidence 999999999999999999999999999999977666543
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7e-80 Score=702.11 Aligned_cols=318 Identities=31% Similarity=0.472 Sum_probs=259.3
Q ss_pred CCCEEEEEEeCCCCh-hhhccCCeEEEe-ec---CC-EEEec---CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001297 99 GDSISVTIRFRPLSE-REFQRGDEIAWY-AD---GD-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~-~E~~~~~~~~~~-~~---~~-~i~~~---~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~ 169 (1105)
+++|+|+|||||+++ .|......+.+. .+ +. .+... .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 589999999999987 443222222222 11 22 22222 223457899999999999999999985 6899999
Q ss_pred hcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCCCCC----
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQ---- 243 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p~~~---- 243 (1105)
|+|||+||||||||||||||||+|+ .+|||||++++||..|... .+..|.|+|||+|||||+|||||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 5799999999999999753 4568999999999999999999987643
Q ss_pred -----ccceeecC--CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceE
Q 001297 244 -----NLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316 (1105)
Q Consensus 244 -----~l~ired~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~ 316 (1105)
.+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+.+... +...
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 236 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT--GAHS 236 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC----CCEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC--Ccee
Confidence 57788775 57899999999999999999999999999999999999999999999999999876432 2345
Q ss_pred eeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCC--CCcccCCCCccchhcccC
Q 001297 317 FSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSS 391 (1105)
Q Consensus 317 ~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k--~~hvPyRdSkLTrLLqds 391 (1105)
.++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+
T Consensus 237 ~skL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqds 305 (347)
T 1f9v_A 237 YGTLN-----------LVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 305 (347)
T ss_dssp EEEEE-----------EEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHH
T ss_pred eeEEE-----------EEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHH
Confidence 67777 999999875 67789999999999999999999999999865 479999999999999999
Q ss_pred CCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001297 392 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYAS 432 (1105)
Q Consensus 392 LgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~ 432 (1105)
|||||+|+|||||||+..+++||++||+||+||++|++.+.
T Consensus 306 LgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 306 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred hCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999988763
No 25
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1e-79 Score=709.74 Aligned_cols=314 Identities=34% Similarity=0.520 Sum_probs=258.3
Q ss_pred CCCEEEEEEeCCCChhhhccCCeEEEe-ecCCEEEecCC----C-----CCcceeeceecCCCCChhHHHhhhhHHHHHH
Q 001297 99 GDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1105)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~i~~~~~----~-----~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~ 168 (1105)
.++|+|+|||||++..|...+...++. .++..+++... . ..+.|.||+||+++++|++||+.++.|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 789999999999999998777654443 34444433211 1 2357999999999999999999999999999
Q ss_pred HhcCCCeEEEEeccCCCCCccccCCCC------CCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeeccCC
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDP 240 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm~G~~------~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~p 240 (1105)
+|+|||+||||||||||||||||+|+. ..+|||||++.+||..+... .+..|.|+|||+|||||+|||||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 999999999999999999999999963 46899999999999998743 3568999999999999999999997
Q ss_pred CCCccceeecC-CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeee
Q 001297 241 TGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1105)
Q Consensus 241 ~~~~l~ired~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~ 319 (1105)
. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++.. ...++
T Consensus 230 ~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~sk 301 (410)
T 1v8k_A 230 K-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-------RLHGK 301 (410)
T ss_dssp T-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-------SEEEE
T ss_pred C-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-------cceeE
Confidence 5 579999998 57999999999999999999999999999999999999999999999999998652 35677
Q ss_pred eehhhhhccccccccccccccccc----cccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccC-CCC
Q 001297 320 LVRWFFLSVKTAYLFQLYESSKTE----TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSG 394 (1105)
Q Consensus 320 l~~~~~~~~~~~~lvDLa~s~k~~----~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqds-LgG 394 (1105)
|+ ||||||+++.. +.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+ |||
T Consensus 302 L~-----------lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGg 369 (410)
T 1v8k_A 302 FS-----------LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGE 369 (410)
T ss_dssp EE-----------EEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSS
T ss_pred EE-----------EEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCC
Confidence 77 99999998743 346788999999999999999999999754 69999999999999999 699
Q ss_pred CccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001297 395 HGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYAS 432 (1105)
Q Consensus 395 nskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~ 432 (1105)
||+|+|||||||+..+++||++||+||+|||+|..+|.
T Consensus 370 nskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 370 NSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp SEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999987653
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-78 Score=702.09 Aligned_cols=320 Identities=31% Similarity=0.480 Sum_probs=264.8
Q ss_pred CCCCCEEEEEEeCCCChh-hhccCCeEEEe-ecC---C-EEEec---CCCCCcceeeceecCCCCChhHHHhhhhHHHHH
Q 001297 97 RSGDSISVTIRFRPLSER-EFQRGDEIAWY-ADG---D-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1105)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~-E~~~~~~~~~~-~~~---~-~i~~~---~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~ 167 (1105)
+.+|+|+|+|||||+.+. |......+.+. .+. . .+... .....+.|.||+||+++++|++||+.+ .|+|+
T Consensus 56 elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~ 134 (403)
T 4etp_A 56 ELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQ 134 (403)
T ss_dssp HHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHH
T ss_pred HcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHH
Confidence 346899999999999877 33333333332 221 1 12211 122346799999999999999999975 58999
Q ss_pred HHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc--CCCceEEEEEeeeeeecceeeeccCCCC---
Q 001297 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1105)
Q Consensus 168 ~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~p~~--- 242 (1105)
++|+|||+||||||||||||||||+|+ .+|||||++++||..|.. ..+..|.|+|||+|||||.|||||+|..
T Consensus 135 ~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 212 (403)
T 4etp_A 135 SSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNK 212 (403)
T ss_dssp HHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-----
T ss_pred HHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccc
Confidence 999999999999999999999999996 469999999999999975 4567999999999999999999998753
Q ss_pred ------CccceeecC--CCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcc
Q 001297 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1105)
Q Consensus 243 ------~~l~ired~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 314 (1105)
..+.|++++ .|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|.+.+... +.
T Consensus 213 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 290 (403)
T 4etp_A 213 EDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT--GA 290 (403)
T ss_dssp ---CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT--CC
T ss_pred cccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC--CC
Confidence 356788776 46899999999999999999999999999999999999999999999999999876443 23
Q ss_pred eEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCC--CcccCCCCccchhcc
Q 001297 315 VIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQ 389 (1105)
Q Consensus 315 ~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~--~hvPyRdSkLTrLLq 389 (1105)
...++|+ ||||||+++ +++.|.|++|+.+||+||++||+||.+|+++.. .||||||||||||||
T Consensus 291 ~~~~kL~-----------lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLq 359 (403)
T 4etp_A 291 HSYGTLN-----------LVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 359 (403)
T ss_dssp EEEEEEE-----------EEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTG
T ss_pred eeEEEEE-----------EEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHH
Confidence 4567777 999999875 677889999999999999999999999987543 599999999999999
Q ss_pred cCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001297 390 SSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYAS 432 (1105)
Q Consensus 390 dsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~ 432 (1105)
|+|||||+|+|||||||+..+++||++||+||+|+++|++.+.
T Consensus 360 dsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 360 YSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp GGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999988764
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.5e-77 Score=680.96 Aligned_cols=308 Identities=28% Similarity=0.443 Sum_probs=243.1
Q ss_pred CCCCCCCEEEEEEeCCCChhhhccCCeEEEee---cCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001297 95 PQRSGDSISVTIRFRPLSEREFQRGDEIAWYA---DGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1105)
Q Consensus 95 ~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~---~~~~i~~~~~~~~~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~ 171 (1105)
.....++|+|+|||||+.+.|......++..+ ++..++.. .+.|.||+||+++++|++||+.++.|+|+.+|+
T Consensus 17 ~~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~ 92 (344)
T 3dc4_A 17 EGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLE 92 (344)
T ss_dssp --CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhC
Confidence 34557899999999999987743333333333 34455443 468999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCCccccCCCC------CCCCchhHHHHHHHHhhccCC---CceEEEEEeeeeeecceeeeccCCCC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTP---GREFLLRVSYLEIYNEVINDLLDPTG 242 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~G~~------~~~GIipra~~~LF~~i~~~~---~~~~~v~vS~lEIYnE~i~DLL~p~~ 242 (1105)
|||+||||||||||||||||+|+. +++|||||++++||+.|.... ...|.|+|||+|||||+|+|||++..
T Consensus 93 G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 172 (344)
T 3dc4_A 93 GFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP 172 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCT
T ss_pred CCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCC
Confidence 999999999999999999999874 568999999999999997543 35799999999999999999998765
Q ss_pred CccceeecCCCcEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCcceEeeeeeh
Q 001297 243 QNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLVR 322 (1105)
Q Consensus 243 ~~l~ired~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~~s~l~~ 322 (1105)
....+ +..+.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.. ..++|+
T Consensus 173 ~~~~~-----~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--------~~skl~- 238 (344)
T 3dc4_A 173 HMPMV-----AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKT--------HHSRMN- 238 (344)
T ss_dssp TSBCC-----SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECSS--------CEEEEE-
T ss_pred CCccc-----cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEecC--------cEEEEE-
Confidence 32221 2335689999999999999999999999999999999999999999999997532 356777
Q ss_pred hhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccce
Q 001297 323 WFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 399 (1105)
Q Consensus 323 ~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~ 399 (1105)
||||||+++ +++.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+
T Consensus 239 ----------lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~ 307 (344)
T 3dc4_A 239 ----------IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLT 307 (344)
T ss_dssp ----------EEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEE
T ss_pred ----------EEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEE
Confidence 999999874 77889999999999999999999999999865 6999999999999999999999999
Q ss_pred eEeeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001297 400 LICTVTPASSSMEETHNTLKFASRAKRVEIYA 431 (1105)
Q Consensus 400 mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~ 431 (1105)
|||||||+..+++||++||+||+||+.....+
T Consensus 308 mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 308 FLACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999876554
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3.5e-72 Score=698.93 Aligned_cols=316 Identities=32% Similarity=0.523 Sum_probs=250.7
Q ss_pred CCCCCEEEEEEeC----CCChhhhccCCeEEEeecC--------CEEEec-C---CCCCcceeeceecCCCCChhHHHhh
Q 001297 97 RSGDSISVTIRFR----PLSEREFQRGDEIAWYADG--------DKIVRN-E---YNPATAYAFDRVFGPHANSQEVYDV 160 (1105)
Q Consensus 97 ~~~~~I~V~vRvR----P~~~~E~~~~~~~~~~~~~--------~~i~~~-~---~~~~~~f~FD~VF~~~~tq~~Vy~~ 160 (1105)
...+.++|||||| |....|...|...+.+.+. ..+++. . ....+.|.||+||+++++|++||+.
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 4558999999999 5555555555443333221 122221 1 1245689999999999999999987
Q ss_pred hhHHHHHHHhcCCCeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC--CCceEEEEEeeeeeecceeeecc
Q 001297 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1105)
Q Consensus 161 ~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL 238 (1105)
+ .|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.|... .+..|.|+|||+|||||+|||||
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl 527 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL 527 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESS
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECC
Confidence 5 58999999999999999999999999999994 5799999999999999753 45689999999999999999999
Q ss_pred CCC---CCccceeecC-CC-cEeeCceEEEeCCHHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCc
Q 001297 239 DPT---GQNLRVREDA-QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1105)
Q Consensus 239 ~p~---~~~l~ired~-~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~ 313 (1105)
+|. ...+.++++. .| ++|.||+++.|.|+++++.+|..|..+|++++|.||.+|||||+||+|+|++.+... .
T Consensus 528 ~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~--~ 605 (715)
T 4h1g_A 528 NPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT--K 605 (715)
T ss_dssp SCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT--C
T ss_pred CCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC--C
Confidence 875 3457777765 45 899999999999999999999999999999999999999999999999999876543 2
Q ss_pred ceEeeeeehhhhhccccccccccccccc---cccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhccc
Q 001297 314 GVIFSQLVRWFFLSVKTAYLFQLYESSK---TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQS 390 (1105)
Q Consensus 314 ~~~~s~l~~~~~~~~~~~~lvDLa~s~k---~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqd 390 (1105)
....++|+ ||||+|+++ +++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||
T Consensus 606 ~~~~~~l~-----------lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~ 674 (715)
T 4h1g_A 606 ESSYGTLN-----------LIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKH 674 (715)
T ss_dssp CEEEEEEE-----------EEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGG
T ss_pred CEeEEEEE-----------EEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHh
Confidence 35667787 999999875 6778999999999999999999999999988778999999999999999
Q ss_pred CCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhcccc
Q 001297 391 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 428 (1105)
Q Consensus 391 sLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~ 428 (1105)
+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 675 slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 675 SLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp GTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred hcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=3.4e-31 Score=247.12 Aligned_cols=99 Identities=42% Similarity=0.622 Sum_probs=95.5
Q ss_pred cchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001297 352 GSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYA 431 (1105)
Q Consensus 352 ~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~ 431 (1105)
+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||++||+||+|||.|++.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHH
Q 001297 432 SRNKIIDEKSLIKKYQREI 450 (1105)
Q Consensus 432 ~~n~~~~~~~~i~~~~~ei 450 (1105)
.+|+..+.+.++++|++||
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999999887
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3e-28 Score=234.82 Aligned_cols=98 Identities=42% Similarity=0.608 Sum_probs=91.8
Q ss_pred hhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001297 356 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 435 (1105)
Q Consensus 356 NkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP~~~~~~ETlsTL~fA~rak~I~~~~~~n~ 435 (1105)
|+||++||+||.+|++++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||.|++.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001297 436 IIDEKSLIKKYQREISSL 453 (1105)
Q Consensus 436 ~~~~~~~i~~~~~ei~~L 453 (1105)
..+.+.++++|++++..+
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 988888877777665544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-24 Score=233.50 Aligned_cols=261 Identities=10% Similarity=0.116 Sum_probs=166.7
Q ss_pred CCCCEEEEEEeCCCC-hhhhccCCeEEEeecCCEEEecCCCCCcceeeceecCCCCChh--HHHhhhhHHHHHHHhc-CC
Q 001297 98 SGDSISVTIRFRPLS-EREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQ--EVYDVAARPVVKAAME-GV 173 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~-~~E~~~~~~~~~~~~~~~i~~~~~~~~~~f~FD~VF~~~~tq~--~Vy~~~~~plV~~~l~-G~ 173 (1105)
-+|+|||+|||||.. + +...+.++++. +... . ..+.|.||+||++...|+ +||+. +.++|+.+|+ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~-~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQG-L-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEET-T-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeec-C-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 469999999999964 3 22223445444 3332 2 347899999999999999 99987 8899999999 99
Q ss_pred CeEEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhcc-CCCceEEEEEeeeeee-cceeeeccC--CCCCccceee
Q 001297 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIY-NEVINDLLD--PTGQNLRVRE 249 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~-~~~~~~~v~vS~lEIY-nE~i~DLL~--p~~~~l~ire 249 (1105)
|+||||||||||||| ||++..+|..... .. ..|.+.+||+||| ||.++|||. +.+..+.|+.
T Consensus 93 NvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~ 158 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 158 (298)
T ss_dssp CEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEE
T ss_pred ceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEe
Confidence 999999999999999 9999999987643 22 7899999999999 999999995 2334677887
Q ss_pred cCC-CcEeeCceEEEeCC-HHHHHHHHHHHhhhcccccCCCCCCCCCceEEEEEEEEecCCCCCCc-ceEeeeeehhhhh
Q 001297 250 DAQ-GTYVEGIKEEVVLS-PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD-GVIFSQLVRWFFL 326 (1105)
Q Consensus 250 d~~-g~~v~gl~e~~V~s-~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~-~~~~s~l~~~~~~ 326 (1105)
+.. +++|.|++.+.|.+ ++|+..++.-+..- ..|. +.-.|+.+.+...+.....+ ..+.-
T Consensus 159 ~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~-------- 221 (298)
T 2o0a_A 159 KFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPV-------- 221 (298)
T ss_dssp EECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCE--------
T ss_pred cCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCce--------
Confidence 765 46899999999999 89988776222211 1121 23456666665532211111 00000
Q ss_pred ccccccccccccccccccccccccccchhhhcHHHHHHHHHHhhcCCCCcccCCCCccchhcccCCCCCccceeEeeeCC
Q 001297 327 SVKTAYLFQLYESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTP 406 (1105)
Q Consensus 327 ~~~~~~lvDLa~s~k~~~~g~r~~E~~~INkSL~aLg~VI~aLs~~k~~hvPyRdSkLTrLLqdsLgGnskt~mI~~IsP 406 (1105)
..||+.+... ++...|.+.+ ..+ -+-.|+++-+|+.-|. ..+-++++++.-
T Consensus 222 ---d~yf~e~~~~-----------------~~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~ 272 (298)
T 2o0a_A 222 ---DFYFIELNNL-----------------KSIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLND 272 (298)
T ss_dssp ---EEEEEEECSH-----------------HHHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECC
T ss_pred ---EEEEEEeCCH-----------------HHHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecC
Confidence 0123333110 1122333322 111 2445677777776654 568899999975
Q ss_pred CCCCHHHHHHHHHHHHHhccccccc
Q 001297 407 ASSSMEETHNTLKFASRAKRVEIYA 431 (1105)
Q Consensus 407 ~~~~~~ETlsTL~fA~rak~I~~~~ 431 (1105)
... .-.-|..+++.+++.|..
T Consensus 273 ~~~----~~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 273 SKN----VNKLLTISEEVQTQLCKR 293 (298)
T ss_dssp GGG----HHHHHHHHHHHHHHTC--
T ss_pred CCc----hhHHHHHHHHhhcccCcc
Confidence 432 223677777777776543
No 32
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.3e-12 Score=109.35 Aligned_cols=51 Identities=37% Similarity=0.862 Sum_probs=48.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1105 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1105 (1105)
+...|+||++.+++++|+||||+++|..|+..+..||+||.+|..++++|.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 456899999999999999999999999999999999999999999999984
No 33
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.15 E-value=2.9e-11 Score=108.74 Aligned_cols=47 Identities=30% Similarity=0.876 Sum_probs=45.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1104 (1105)
.|.||++..++++++||||.+||..|+..+..||+||.+|..++++|
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 79999999999999999999999999999999999999999999998
No 34
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=1.9e-11 Score=105.12 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=45.3
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcCC----CCCCCcccccceeecc
Q 001297 1055 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLACS----ECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~--PCgH~~~C~~C~~~~~----~CPiCR~~i~~~i~if 1104 (1105)
....|+||++++++++++ ||||+++|..|+..+. .||+||++|..++++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 455899999999998888 9999999999987764 8999999999999998
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=1.4e-10 Score=102.83 Aligned_cols=47 Identities=34% Similarity=0.913 Sum_probs=45.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1104 (1105)
.|.||++...+.+++||||.+||..|......||+||.+|...+++|
T Consensus 26 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp BCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=103.09 Aligned_cols=47 Identities=36% Similarity=0.949 Sum_probs=45.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1104 (1105)
.|.||++...+.+++||||.+||..|......||+||.+|...+++|
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 37
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.99 E-value=5.7e-11 Score=102.40 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=44.7
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001297 1055 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~--PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~if 1104 (1105)
+...|+||++++++++++ ||||.++|..|+..+ ..||+||++|..++++|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 344799999999999998 999999999997665 35999999999999998
No 38
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.73 E-value=4.4e-09 Score=119.57 Aligned_cols=47 Identities=34% Similarity=0.994 Sum_probs=46.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1104 (1105)
.|.||++...+.+++||||.|||..|...+..||+||.+|...+++|
T Consensus 297 ~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp BCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 89999999999999999999999999999999999999999999998
No 39
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.37 E-value=0.0024 Score=68.21 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001297 613 DLLVEQVKMLAGEI 626 (1105)
Q Consensus 613 d~l~eq~k~l~~e~ 626 (1105)
|.|+..+..+..++
T Consensus 2 ~~~~~~~~~l~~~~ 15 (284)
T 1c1g_A 2 DAIKKKMQMLKLDK 15 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhH
Confidence 33344433333333
No 40
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.29 E-value=2e-07 Score=92.48 Aligned_cols=44 Identities=36% Similarity=0.760 Sum_probs=37.8
Q ss_pred cccccccccccceEEeCCCCcccchhhhhc----CCCCCCCccccccee
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRL 1101 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~i 1101 (1105)
..|.||++...+.+++||||. ||..|... ...||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 479999999999999999997 99999543 356999999997654
No 41
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.29 E-value=0.0024 Score=68.20 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
.+..|..++......++.|..++.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 42
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.28 E-value=9.6e-07 Score=115.87 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=25.6
Q ss_pred hHHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 155 QEVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 155 ~~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
-.||. ++......+ -.|.|-||+..|-+|||||.+.
T Consensus 150 PHi~a-ia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 150 PHIYA-IADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCHHH-HHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred ccHhh-hHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35775 333333333 3799999999999999999764
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4e-07 Score=79.16 Aligned_cols=49 Identities=27% Similarity=0.776 Sum_probs=40.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~if 1104 (1105)
.....|.||++...+ +++||||. ||..|.... ..||+||.+|.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345689999999999 88999999 999997543 56999999998766554
No 44
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.17 E-value=3e-06 Score=111.17 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=13.3
Q ss_pred ccCCCCCCCCCceEEEEEEE
Q 001297 284 GSNNFNLLSSRSHTIFTLMI 303 (1105)
Q Consensus 284 ~sT~~N~~SSRSH~If~I~v 303 (1105)
+.|..|..|||-=-++.|++
T Consensus 236 AkT~rN~NSSRfgk~~~i~f 255 (1184)
T 1i84_S 236 AKTVKNDNSSRFGKFIRINF 255 (1184)
T ss_dssp EEETTEEEEECSCEEEEEEE
T ss_pred CcCCCCccccccceeEEEEE
Confidence 45677777777655666655
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.16 E-value=6.8e-07 Score=77.15 Aligned_cols=48 Identities=27% Similarity=0.864 Sum_probs=40.3
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhhhc----CCCCCCCcccccceeecc
Q 001297 1056 SHMCKVCFESPTA-AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~-~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~if 1104 (1105)
...|.||++...+ ++++||||. ||..|... ...||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4579999999988 689999999 99999643 367999999999876654
No 46
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.5e-07 Score=77.15 Aligned_cols=44 Identities=27% Similarity=0.870 Sum_probs=37.9
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34589999999999999999999 999997543 569999999864
No 47
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.1e-06 Score=76.87 Aligned_cols=45 Identities=22% Similarity=0.769 Sum_probs=37.8
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1099 (1105)
.....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345589999999999999999999 999995432 369999999864
No 48
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=78.67 Aligned_cols=46 Identities=26% Similarity=0.714 Sum_probs=38.7
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1100 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1100 (1105)
.....|.||++...+.+++||||. ||..|... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 345689999999999999999998 99999643 35699999998743
No 49
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.05 E-value=1.1e-06 Score=74.50 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=38.3
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001297 1056 SHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1104 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~-------vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~--~~i~if 1104 (1105)
...|.||++...+. +++||||. ||..|... ...||+||..+. ..+++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 44799999977654 88999999 99999643 357999999987 456665
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.04 E-value=2e-06 Score=98.43 Aligned_cols=47 Identities=32% Similarity=0.812 Sum_probs=41.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhh-----cCCCCCCCcccccceeecc
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~-----~~~~CPiCR~~i~~~i~if 1104 (1105)
..|.||++...+.+++||||. ||..|.. ....||+||.+|.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 589999999999999999999 8999964 3577999999999876653
No 51
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.3e-06 Score=75.33 Aligned_cols=45 Identities=27% Similarity=0.798 Sum_probs=36.6
Q ss_pred Ccccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~-------vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
.....|.||++...+. +++||||. ||..|... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455899999987765 88999997 99999643 3679999999865
No 52
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.02 E-value=2.1e-06 Score=70.73 Aligned_cols=43 Identities=35% Similarity=0.802 Sum_probs=35.5
Q ss_pred cccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCccccc
Q 001297 1055 NSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKIS 1098 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~----~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~ 1098 (1105)
+...|.||++...+ ++++||||. ||..|.... ..||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34589999998755 899999997 999995432 67999999885
No 53
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.99 E-value=2.3e-06 Score=75.89 Aligned_cols=45 Identities=33% Similarity=0.756 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----------CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----------CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----------~~~CPiCR~~i~~ 1099 (1105)
.....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345689999999999999999998 99999653 3469999999864
No 54
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.99 E-value=1.4e-06 Score=75.77 Aligned_cols=49 Identities=24% Similarity=0.709 Sum_probs=38.3
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc--eeecc
Q 001297 1055 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD--RLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~-------vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~--~i~if 1104 (1105)
....|.||++...+. +++||||. ||..|... ...||+||..+.. ..++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 445899999987665 89999998 99999533 3679999999874 34444
No 55
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.6e-06 Score=77.14 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=37.5
Q ss_pred CCcccccccccccccc----eEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001297 1053 DPNSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1099 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~----~vl~PCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1099 (1105)
......|.||++...+ .+++||||. ||..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3455689999999888 899999998 999995432 579999998653
No 56
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.97 E-value=3.7e-06 Score=75.35 Aligned_cols=44 Identities=25% Similarity=0.725 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----------~~~CPiCR~~i~~ 1099 (1105)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999999999999999998 99999533 4579999999864
No 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.6e-06 Score=73.62 Aligned_cols=47 Identities=26% Similarity=0.642 Sum_probs=38.6
Q ss_pred CcccccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCccccccee
Q 001297 1054 PNSHMCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISDRL 1101 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~----~~~CPiCR~~i~~~i 1101 (1105)
.....|.||++...+.+.+ ||||. ||..|... ...||+||..|...-
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456899999999988886 99998 99999533 467999999987643
No 58
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.93 E-value=3.9e-06 Score=72.60 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=38.5
Q ss_pred Ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001297 1054 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1103 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~i 1103 (1105)
.....|.||++.. ..++++||||. ||..|... ...||+||..|...++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 3456899997754 56788999999 99999543 35699999999876653
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.93 E-value=2.9e-06 Score=70.75 Aligned_cols=44 Identities=34% Similarity=0.748 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-CCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-SECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-~~CPiCR~~i~~ 1099 (1105)
....|.||++...+.+++||||. ||..|.... ..||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 34579999999999999999998 999997543 569999998763
No 60
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.92 E-value=6.6e-06 Score=79.80 Aligned_cols=41 Identities=32% Similarity=0.693 Sum_probs=36.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.+++||||. ||..|... ...||+||.++..
T Consensus 54 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 79999999999999999999 99999532 2479999999976
No 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=4.1e-06 Score=75.06 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----------~~~CPiCR~~i~~ 1099 (1105)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 44589999999999999999998 99999533 4679999998874
No 62
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.91 E-value=2.3e-06 Score=76.47 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=38.4
Q ss_pred Ccccccccccccc--cceEEeC--CCCcccchhhhhcC-----CCCCCCcccccceeecc
Q 001297 1054 PNSHMCKVCFESP--TAAILLP--CRHFCLCKSCSLAC-----SECPICRTKISDRLFAF 1104 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~--~~~vl~P--CgH~~~C~~C~~~~-----~~CPiCR~~i~~~i~if 1104 (1105)
.....|.||++.. .+.+++| |||. ||..|...+ ..||+||+++.....+|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3456899999976 4567777 9999 999996543 46999999998765444
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.89 E-value=6.3e-06 Score=67.90 Aligned_cols=43 Identities=33% Similarity=0.737 Sum_probs=34.9
Q ss_pred cccccccccccccc---eEEeC-CCCcccchhhhhc----CCCCCCCccccc
Q 001297 1055 NSHMCKVCFESPTA---AILLP-CRHFCLCKSCSLA----CSECPICRTKIS 1098 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~---~vl~P-CgH~~~C~~C~~~----~~~CPiCR~~i~ 1098 (1105)
+...|.||++...+ ++.+| |||. ||..|... ...||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 44589999998776 78888 9998 99999643 356999999874
No 64
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5e-06 Score=71.40 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
.....|.||++...+.+.+||||. ||..|... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345689999999999999999999 99999542 3569999999875
No 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=6.5e-06 Score=78.05 Aligned_cols=41 Identities=34% Similarity=0.936 Sum_probs=35.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.+++||||. ||..|.... ..||+||.++..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 79999999999999999998 999995322 369999998864
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.86 E-value=6.2e-06 Score=75.73 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=36.3
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001297 1055 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1100 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~---~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1100 (1105)
....|.||++.... ++.+||||. ||..|... ...||+||..|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 45589999987766 888999998 99999543 35699999988653
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.85 E-value=9.1e-06 Score=71.56 Aligned_cols=46 Identities=26% Similarity=0.744 Sum_probs=37.6
Q ss_pred CCcccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCcccccc
Q 001297 1053 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKISD 1099 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~P-CgH~~~C~~C~~~~------~~CPiCR~~i~~ 1099 (1105)
......|.||++...+.+++| |||. ||..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345568999999999999999 9998 999995322 479999997643
No 68
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.1e-06 Score=72.40 Aligned_cols=48 Identities=23% Similarity=0.613 Sum_probs=37.3
Q ss_pred Ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceee
Q 001297 1054 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLF 1102 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~ 1102 (1105)
.....|.||++.. ..++++||+|. ||..|... ...||+||.+|.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455899999874 45677799999 99999543 3579999999987544
No 69
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.82 E-value=1e-05 Score=71.69 Aligned_cols=45 Identities=31% Similarity=0.803 Sum_probs=35.2
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001297 1055 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1100 (1105)
Q Consensus 1055 ~~~~C~IC~~~~---~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1100 (1105)
....|.||++.. ..++++||+|. ||..|... ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 455899997654 56678899998 99999542 36799999998764
No 70
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=5.7e-06 Score=72.93 Aligned_cols=44 Identities=30% Similarity=0.672 Sum_probs=34.5
Q ss_pred ccccccccccccc---ceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPT---AAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~---~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
....|.||++... .++.+||+|. ||..|... ...||+||..|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4458999997644 3588999998 99999543 3679999998864
No 71
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.78 E-value=8e-06 Score=74.77 Aligned_cols=44 Identities=27% Similarity=0.782 Sum_probs=37.1
Q ss_pred CCcccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCcccc
Q 001297 1053 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKI 1097 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~P-CgH~~~C~~C~~~~------~~CPiCR~~i 1097 (1105)
......|.||++...+.+++| |||. ||..|.... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345568999999999999999 9999 999995322 4799999987
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=5.5e-06 Score=70.91 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=32.5
Q ss_pred cccccccc-cccce----EEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1057 HMCKVCFE-SPTAA----ILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~-~~~~~----vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
..|.||++ ...+. +++||||. ||..|.... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 33332 67899998 999995433 569999999864
No 73
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.73 E-value=1.1e-05 Score=77.26 Aligned_cols=41 Identities=39% Similarity=0.980 Sum_probs=35.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.+.+||||. ||..|.... ..||+||..+..
T Consensus 17 ~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 79999999999999999999 999996543 369999998863
No 74
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.73 E-value=1.5e-05 Score=74.47 Aligned_cols=41 Identities=32% Similarity=0.702 Sum_probs=35.5
Q ss_pred ccccccccccceEE-eCCCCcccchhhhhc----C-CCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAIL-LPCRHFCLCKSCSLA----C-SECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl-~PCgH~~~C~~C~~~----~-~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.++ +||||. ||..|... . ..||+||.++..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 79999999999999 999999 99999543 2 579999998753
No 75
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.71 E-value=1.7e-05 Score=79.73 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=36.8
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1100 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 1100 (1105)
..|.||++...+.+++||||. ||..|.... ..||+||..+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 379999999999999999998 999995432 3699999998754
No 76
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.68 E-value=2e-05 Score=69.85 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
.....|.||++-..+.|++||||. ||..|... ...||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 455689999999999999999999 99999532 3569999999864
No 77
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.66 E-value=1.2e-05 Score=74.65 Aligned_cols=41 Identities=29% Similarity=0.850 Sum_probs=35.3
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.+++ ||||. ||..|... ...||+||..+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 799999999999888 99999 99999533 3569999998874
No 78
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.65 E-value=1.1e-05 Score=82.13 Aligned_cols=42 Identities=31% Similarity=0.870 Sum_probs=35.5
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1057 HMCKVCFESPTAAILL-PCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
..|.||++...+.+.+ ||||. ||..|... ...||+||.+|..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3899999999998887 99998 99999533 3569999999853
No 79
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.65 E-value=1.5e-05 Score=75.27 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=36.8
Q ss_pred ccccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1056 SHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
...|.||++...+.+.+ ||||. ||..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 34799999999999998 99998 999995432 679999999875
No 80
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.60 E-value=2.8e-05 Score=74.60 Aligned_cols=40 Identities=30% Similarity=0.845 Sum_probs=35.9
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhcC--CCCCCCccccc
Q 001297 1058 MCKVCFESPTAAILL-PCRHFCLCKSCSLAC--SECPICRTKIS 1098 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~~--~~CPiCR~~i~ 1098 (1105)
.|.||++...+.+++ ||||. ||..|.... ..||+||.++.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 799999999999998 99999 999997554 56999999985
No 81
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.8e-05 Score=65.99 Aligned_cols=39 Identities=23% Similarity=0.821 Sum_probs=32.7
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhh-------cCCCCCCC
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSL-------ACSECPIC 1093 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~-------~~~~CPiC 1093 (1105)
.....|.||++...+.+++||||. ||..|.. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345589999999999999999999 9999943 23469998
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2.1e-05 Score=65.37 Aligned_cols=38 Identities=32% Similarity=0.864 Sum_probs=32.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCC
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPIC 1093 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-------~~~CPiC 1093 (1105)
....|.||++...+.+++||||. ||..|... ...||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45589999999999999999999 99999533 2569998
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.49 E-value=4.8e-05 Score=73.10 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=38.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
.....|.||++...+.+.+||||. ||..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345589999999999999999999 999995432 389999999875
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.43 E-value=2.7e-05 Score=74.13 Aligned_cols=44 Identities=30% Similarity=0.678 Sum_probs=33.6
Q ss_pred cccccccccccc------------------ceEEeCCCCcccchhhhhc---------CCCCCCCcccccce
Q 001297 1056 SHMCKVCFESPT------------------AAILLPCRHFCLCKSCSLA---------CSECPICRTKISDR 1100 (1105)
Q Consensus 1056 ~~~C~IC~~~~~------------------~~vl~PCgH~~~C~~C~~~---------~~~CPiCR~~i~~~ 1100 (1105)
...|.||++... .++++||+|. ||..|... ...||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 348999999763 3348899998 99999422 34699999988653
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.41 E-value=0.0085 Score=65.31 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 897 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
...+..++.....++..||.++.+.....+++...+++++.++..+..+|
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888877777666777766666666666666666
No 86
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=97.36 E-value=0.00024 Score=62.36 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcCC
Q 001297 906 ARKQREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 962 (1105)
Q Consensus 906 a~~er~~aLE~el~~k~~~eeEL~----------~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~~~ 962 (1105)
+++++|++||+||++|+.+.+||. +++.++++++..|..|+ +++++++++
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~-------~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHV-------RQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 678999999999999999999997 89999999999999999 666665543
No 87
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.32 E-value=8.6e-05 Score=70.97 Aligned_cols=41 Identities=29% Similarity=0.750 Sum_probs=35.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001297 1058 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1099 (1105)
Q Consensus 1058 ~C~IC~~~~~~~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1099 (1105)
.|.||++...+.+.+||||. ||..|... ...||+||.+|..
T Consensus 25 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 25 SCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp BCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 79999999999999999999 99999532 3579999999864
No 88
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00014 Score=65.24 Aligned_cols=42 Identities=19% Similarity=0.598 Sum_probs=31.1
Q ss_pred cccccccccccc--------------eEEe-CCCCcccchhhhh----cCCCCCCCcccccc
Q 001297 1057 HMCKVCFESPTA--------------AILL-PCRHFCLCKSCSL----ACSECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~~--------------~vl~-PCgH~~~C~~C~~----~~~~CPiCR~~i~~ 1099 (1105)
..|.||++...+ ++++ +|+|. ||..|.. ....||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 368888887654 4444 59999 9999953 23569999998753
No 89
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.21 E-value=0.00017 Score=78.94 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=38.1
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
.+....|+||++-..+-|++||||. ||..|...+ ..||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456689999999999999999998 999995422 349999999863
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.18 E-value=8.2e-05 Score=72.16 Aligned_cols=44 Identities=27% Similarity=0.813 Sum_probs=36.0
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~-------vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
+...|.||++...+. +++||||. ||..|... -..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 445899999987765 89999998 99999533 3569999998874
No 91
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.13 E-value=0.00021 Score=66.88 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=37.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
+....|.||++-.++-|++||||. ||..|... ...||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345689999999999999999998 99999432 3569999998764
No 92
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.11 E-value=5.7e-05 Score=75.15 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=36.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKI 1097 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i 1097 (1105)
.....|.||++-..+.|.+||||. ||..|.... ..||+||.+|
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345589999999999999999999 999995432 3699999975
No 93
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.08 E-value=0.0002 Score=66.75 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.7
Q ss_pred CcccccccccccccceEEeCCC-Ccccchhhhhc----CCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCR-HFCLCKSCSLA----CSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCg-H~~~C~~C~~~----~~~CPiCR~~i~~ 1099 (1105)
+....|.||++-.++-|++||| |. ||..|... ...||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3455899999999999999999 98 99999533 3569999998764
No 94
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.08 E-value=0.00026 Score=64.14 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=38.0
Q ss_pred CcccccccccccccceEEeCCCCcccchhhhh----cCCCCCCCcccccc
Q 001297 1054 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSL----ACSECPICRTKISD 1099 (1105)
Q Consensus 1054 ~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~----~~~~CPiCR~~i~~ 1099 (1105)
+....|.||++-.++-|++||||. ||..|.. ....||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345689999999999999999998 9999943 24679999998764
No 95
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.07 E-value=0.00018 Score=69.70 Aligned_cols=49 Identities=24% Similarity=0.709 Sum_probs=38.7
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhh----cCCCCCCCcccccc--eeecc
Q 001297 1055 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSL----ACSECPICRTKISD--RLFAF 1104 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~-------vl~PCgH~~~C~~C~~----~~~~CPiCR~~i~~--~i~if 1104 (1105)
+...|.||++..... ++.||||. ||..|.. ....||+||..|.. .+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 455899999977664 88999999 9999954 34679999999874 35665
No 96
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.02 E-value=0.00054 Score=70.63 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCCCCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1050 GNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1050 ~~~~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
....+....|+||++-..+-|++||||. ||..|...+ ..||+||.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3455677899999999999999999998 999994221 359999998764
No 97
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.80 E-value=0.0006 Score=64.43 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=31.9
Q ss_pred ccccccccccc------------------ceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001297 1057 HMCKVCFESPT------------------AAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1098 (1105)
Q Consensus 1057 ~~C~IC~~~~~------------------~~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~ 1098 (1105)
..|.||++... .++++||+|. ||..|... ...||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 36999988654 2578899999 99999543 356999999863
No 98
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.80 E-value=0.00059 Score=69.61 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=38.7
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001297 1053 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1099 (1105)
Q Consensus 1053 ~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1099 (1105)
......|.||++-..+.|..||||. ||..|.... ..||+||.+|..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3455689999999999999999999 999995432 489999998875
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.76 E-value=0.18 Score=71.35 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 771 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 771 ~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.=.+++++|+.+......|+..|+.+.+.....-.-|..|.+.++.|..-+.+.+..+..+...|-.+
T Consensus 2039 ~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2039 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 33344555556666666666666666666666666677899999999999999999999998888877
No 100
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.41 E-value=0.00058 Score=65.62 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=0.0
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001297 1057 HMCKVCFESPTA------------------AILLPCRHFCLCKSCSLA----CSECPICRTKIS 1098 (1105)
Q Consensus 1057 ~~C~IC~~~~~~------------------~vl~PCgH~~~C~~C~~~----~~~CPiCR~~i~ 1098 (1105)
..|.||++...+ ++++||+|. ||..|... ...||+||+.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 379999887543 445799999 99999644 356999999853
No 101
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.37 E-value=0.34 Score=52.55 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 692 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+..|..++....-.+.....+...++.++...+.++.+++.++...+.++
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444344444555666778888888888888999999999888
No 102
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.002 Score=59.33 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=33.7
Q ss_pred cccccccccccccceEEeC-CCCcccchhhhhc----------CCCCCC--Cccc
Q 001297 1055 NSHMCKVCFESPTAAILLP-CRHFCLCKSCSLA----------CSECPI--CRTK 1096 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~P-CgH~~~C~~C~~~----------~~~CPi--CR~~ 1096 (1105)
....|.||++-..+-|+.| |||. ||..|... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4458999999999999997 9998 99999422 237999 9855
No 103
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.14 E-value=0.03 Score=72.49 Aligned_cols=74 Identities=20% Similarity=0.149 Sum_probs=51.6
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 769 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 769 l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
+++...|.+.++.++..|.++...+..+.+++..|-....+....+.. +|.+.|.+|+.+|..|+.++.++...
T Consensus 972 le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777777777777777777777766666666555553 55588999999999998887766633
No 104
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.86 E-value=0.0016 Score=59.75 Aligned_cols=41 Identities=24% Similarity=0.707 Sum_probs=29.5
Q ss_pred cccccccccccccce-E--EeCCCCcccchhhhhc------------CCCCCC--Cccc
Q 001297 1055 NSHMCKVCFESPTAA-I--LLPCRHFCLCKSCSLA------------CSECPI--CRTK 1096 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~-v--l~PCgH~~~C~~C~~~------------~~~CPi--CR~~ 1096 (1105)
+...|.||++....- + +.||||. ||..|... .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 345799999875432 2 2389999 99999321 135999 9988
No 105
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.75 E-value=0.65 Score=47.85 Aligned_cols=38 Identities=8% Similarity=-0.078 Sum_probs=20.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhc
Q 001297 603 PIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQS 640 (1105)
Q Consensus 603 ~~~~~~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~ 640 (1105)
|+.....|++.--++........+.+....|..|.+.+
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS 40 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGS 40 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666656655555555444444
No 106
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.0073 Score=53.98 Aligned_cols=45 Identities=20% Similarity=0.722 Sum_probs=33.5
Q ss_pred cccccccccccc--cceEEeCCC-----Ccccchhhhhc------CCCCCCCcccccce
Q 001297 1055 NSHMCKVCFESP--TAAILLPCR-----HFCLCKSCSLA------CSECPICRTKISDR 1100 (1105)
Q Consensus 1055 ~~~~C~IC~~~~--~~~vl~PCg-----H~~~C~~C~~~------~~~CPiCR~~i~~~ 1100 (1105)
....|.||++.. .+.+++||+ |. |...|... -..||+||..+.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345899999754 456789997 98 99999432 14799999987643
No 107
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0036 Score=67.77 Aligned_cols=44 Identities=18% Similarity=0.432 Sum_probs=35.7
Q ss_pred cccccccccccccceEEe-CCCCcccchhhhhcC------CCCCC--Ccccccc
Q 001297 1055 NSHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC------SECPI--CRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~~------~~CPi--CR~~i~~ 1099 (1105)
....|+||++-.++-|.. .|||. ||..|...+ ..||+ |++.+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 445899999999999985 99998 999995432 35999 9997653
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.51 E-value=0.14 Score=66.39 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 138 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 138 HIFA-VAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 4665 333333333 3799999999999999999764
No 109
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.44 E-value=1.5 Score=45.19 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
|+..+...+..|..-...|...|.-|-. -.-++.+=++|+-...++....|+-|..|+..+.
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr-------~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLER-------AKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333 2223445678888899999999999999998744
No 110
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.35 E-value=0.0058 Score=56.32 Aligned_cols=41 Identities=27% Similarity=0.817 Sum_probs=29.4
Q ss_pred ccccccccccc--eEEeCCCCcccchhhhhc-----CCCCCCCcccccce
Q 001297 1058 MCKVCFESPTA--AILLPCRHFCLCKSCSLA-----CSECPICRTKISDR 1100 (1105)
Q Consensus 1058 ~C~IC~~~~~~--~vl~PCgH~~~C~~C~~~-----~~~CPiCR~~i~~~ 1100 (1105)
-|.+|-- |.. .-++||.|. ||..|+.. ...||+|+.+|..+
T Consensus 3 fC~~C~~-Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGL-PIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCS-BCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCC-CeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4667732 222 235799996 99999843 46799999999875
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.99 E-value=2.2 Score=60.71 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 759 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 759 ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
+..+...++.+...+.++.+++.++..|.+++..+..+.++|..+..........|..-+..|+.|-.+=..+-..|..+
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 33444444455555555666666666666666666666666666555555555555444444444444444444444443
No 112
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.91 E-value=3.4 Score=41.23 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHH
Q 001297 612 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 691 (1105)
Q Consensus 612 ~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~ 691 (1105)
|+.|-.|+|.. .|-++++-. |.+ + +..++.--++.++..+.|+...-.. .--+.+.
T Consensus 2 ~~~lE~qlkea-ae~ad~Kye-----Eva-R-----------~E~dLEraEERae~aE~k~~eLEee------L~~v~~n 57 (155)
T 2efr_A 2 MKQLEDKVEEL-LSKNYHLEN-----EVA-R-----------LKKLLERAEERAELSEGKSAELEEE------LKTVTNN 57 (155)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH-----HHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHH-HHHhHHHHH-----HHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHh
Confidence 56778888887 444443322 222 1 6667777777777777776421110 0001122
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 692 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+..|..+-.+.+-.-+.-....+.|+++|.+|+.++..++..|..|+..+
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i 107 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222211122234677788888888888887777777777766
No 113
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.54 E-value=4.5 Score=40.80 Aligned_cols=112 Identities=19% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHh
Q 001297 692 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 771 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~ 771 (1105)
..+|+-+.-|..+.+.-..+.++-|++.+...+.....|++++..|..+|.
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~----------------------------- 79 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE----------------------------- 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 445555555555555555567778888888888888999999988888881
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 838 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~E 838 (1105)
.=+.....-.+-...|..+++.|..|...-+..-..+..+.+.|.++|..|+.+..-++-+
T Consensus 80 ------qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid 140 (168)
T 3o0z_A 80 ------AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEID 140 (168)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1112222223333444445555555555555555555567777777888888888777744
No 114
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=93.10 E-value=0.033 Score=47.06 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=35.5
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001297 1057 HMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1099 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~-PCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1099 (1105)
..|.||++-..+-|+. +|||. ||..|.... ..||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999999999999 99998 999995432 569999998754
No 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.56 E-value=0.028 Score=56.94 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=35.9
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++||.....+..|..+++ .+..++.++--.-...++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35788887665556777775 44555554433334567889999999999874
No 116
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.25 E-value=0.74 Score=55.56 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001297 657 EIQEKRRQMRILEQR 671 (1105)
Q Consensus 657 qlrdKeeei~~L~qk 671 (1105)
++.+++.++..|..+
T Consensus 457 e~~~~~~~i~~l~~~ 471 (597)
T 3oja_B 457 EVNELRAEVQQLTNE 471 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.33 E-value=0.071 Score=54.84 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC-eEEEEeccCCCCCccccC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n-~tIfaYGqTGSGKTyTm~ 192 (1105)
.++||.+......+..++. .+..++...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 4678876655545666776 33444544333322 678999999999999863
No 118
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.18 E-value=14 Score=37.29 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Q 001297 755 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAK 834 (1105)
Q Consensus 755 ~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~q 834 (1105)
+..++-.+.|++..++...+-..++++-...+.-....+...+.- |-+.+..|......
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rE---------------------Lq~~~~~L~~~k~~ 66 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRE---------------------LQERNRILENSKSQ 66 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 344444556666555554444445544444444333333333333 33367777777777
Q ss_pred HHHHHHHHHHH
Q 001297 835 LEKELLAARES 845 (1105)
Q Consensus 835 L~~El~~~k~~ 845 (1105)
|..|+..++..
T Consensus 67 Leke~~~LQa~ 77 (168)
T 3o0z_A 67 TDKDYYQLQAI 77 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666643
No 119
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.85 E-value=2.5 Score=37.56 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 762 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 762 ~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
+..|.++++.=.+.|.-++-|+..|-++|..|..+++.+.. ....|..+|.+|..|..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~---------------------~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH---------------------QREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555 55556667777766644
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.47 E-value=5.4 Score=47.98 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=19.8
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 711 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 711 ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+...+++++...+..+..++++++..++..
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4555666666666666666777766666655
No 121
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.45 E-value=7.5 Score=38.80 Aligned_cols=124 Identities=17% Similarity=0.137 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKS-AGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 790 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~-~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~ 790 (1105)
+.....+++..++..+.+|+.+|...-..+.. +|... ..+..-...++.+..|. ..+...+.....-.-..
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-LE~seekasqrEd~yEeqIk~L~-------~kLKEAE~RAE~AERsv 100 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNLKS-LEAQAEKYSQKEDKYEEEIKVLS-------DKLKEAETRAEFAERSV 100 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 55566677777777777777777665555511 11000 00000000111111111 11122222222233344
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 791 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 791 ~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.+|...+.+|-++-+..|..+.....+|.....+++.+..-+..|..|+..++
T Consensus 101 ~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 101 TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 56666777777777777888888888888877788887777777777765443
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.30 E-value=0.096 Score=58.35 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.0
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3678775543334555665 44455555444445678899999999999975
No 123
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.78 E-value=5.6 Score=36.31 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 001297 914 LEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKE 959 (1105)
Q Consensus 914 LE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke 959 (1105)
.|++| ++|+++++.+......|+.|+.+|+..+..+++.
T Consensus 54 ye~~i-------~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 54 YEEEM-------RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56665 6788888888888888999998888888887653
No 124
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.69 E-value=20 Score=35.59 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|..+|-.+......|..+|..+++.+
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el 29 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTI 29 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 466778888888888888888888888
No 125
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.75 E-value=0.92 Score=39.32 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001297 691 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQ 740 (1105)
Q Consensus 691 ~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~ 740 (1105)
.|-.|+..|.++.-|++.+-+-++.++.+|++++.++.+|+.++|.+++-
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 48888889999999999999999999999999999999999999988763
No 126
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=87.73 E-value=0.24 Score=41.56 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=31.6
Q ss_pred cccccccccccccceEEeCCCCc----ccchhhhh------cCCCCCCCccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHF----CLCKSCSL------ACSECPICRTKIS 1098 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~----~~C~~C~~------~~~~CPiCR~~i~ 1098 (1105)
....|.||++...+-++.||.+. .|=..|.. ....||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45589999987766678998652 36677832 2356999999874
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.33 E-value=3.5 Score=40.48 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=14.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
|.-.++++....+.++.++.+++-.||.++
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444545444444444
No 128
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.30 E-value=4.5 Score=39.65 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..|.+++.+...++..|.+++..++.++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 129
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.81 E-value=2.7 Score=39.26 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..++.|..+...|.+|+.++...+..+
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666655544
No 130
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.41 E-value=3.3 Score=45.76 Aligned_cols=121 Identities=9% Similarity=0.139 Sum_probs=80.9
Q ss_pred CCCCEEEEEEeCCCChhhhccCCeEEEeecCCEEEecCCCCCcceeeceecCCCC-ChhHHHhhhhHHHHHHHh-cCCCe
Q 001297 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHA-NSQEVYDVAARPVVKAAM-EGVNG 175 (1105)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~i~~~~~~~~~~f~FD~VF~~~~-tq~~Vy~~~~~plV~~~l-~G~n~ 175 (1105)
-+|.||+++=+-+-. .+..+.+.....+|. .......|.|++|++... +-.+++..-.+..++-++ .+.|+
T Consensus 57 lKG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 57 QKGTMRVYAYVMEQN-----LPENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp HHTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred hcCcEEEEEEECccc-----CCccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 357888888776622 122334433344443 233567899999996554 355666678889999999 99999
Q ss_pred EEEEeccCCCCCccccCCCCCCCCchhHHHHHHHHhhccC---CCceEEEEEeeeeeecce-eeeccCCC
Q 001297 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT---PGREFLLRVSYLEIYNEV-INDLLDPT 241 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~G~~~~~GIipra~~~LF~~i~~~---~~~~~~v~vS~lEIYnE~-i~DLL~p~ 241 (1105)
.||..|..- .+..-..|+..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 130 slIsis~~~----------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 130 NLISLSTTP----------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EEEEEESSC----------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred eEEEecCCC----------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 999998652 123445555556544 235789999998888776 79999875
No 131
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.80 E-value=0.29 Score=53.96 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhc--CCC--eEEEEeccCCCCCcccc
Q 001297 144 FDRVFGPHANSQEVYDVAARPVVKAAME--GVN--GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 144 FD~VF~~~~tq~~Vy~~~~~plV~~~l~--G~n--~tIfaYGqTGSGKTyTm 191 (1105)
||.+|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555544444455666666667766553 222 36888999999999865
No 132
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=85.50 E-value=0.18 Score=56.40 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=30.8
Q ss_pred cccccccccccc--------eEEeCCCCcccchhhhhc---------------CCCCCCCccccccee
Q 001297 1057 HMCKVCFESPTA--------AILLPCRHFCLCKSCSLA---------------CSECPICRTKISDRL 1101 (1105)
Q Consensus 1057 ~~C~IC~~~~~~--------~vl~PCgH~~~C~~C~~~---------------~~~CPiCR~~i~~~i 1101 (1105)
..|.|||+.... +--.+|+|. |-..|-.. ...||.||.+|...+
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 479999985443 112479998 99999321 145999999987543
No 133
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.24 E-value=28 Score=33.53 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.1
Q ss_pred HHHHhhHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKE 838 (1105)
Q Consensus 824 ev~kL~~~N~qL~~E 838 (1105)
++...+..|..|..+
T Consensus 91 rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 91 RLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.02 E-value=28 Score=33.46 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001297 760 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ 798 (1105)
Q Consensus 760 e~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~ 798 (1105)
..+.++...+......+..|..++..|.++...|..+++
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455444444444444444455555444444444433
No 135
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.25 E-value=4.4 Score=36.90 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q 001297 786 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 786 L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El 839 (1105)
|..++-.|..+.+++-+|..-..-+.....++...|..+|.+|..+|.+|..|-
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333445556788888889999999999888773
No 136
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.14 E-value=1.9 Score=40.62 Aligned_cols=100 Identities=22% Similarity=0.206 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHH
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 688 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~ 688 (1105)
-||.|.|..+.-.|.+.+..-...-+.|.+.=-..-++...|++.|..++..-+..+..|.+....... ++
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---------~v 75 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---------DV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 356666666655555555444444443333322212233567777777777777777777777655443 45
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQ 717 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lq 717 (1105)
+.++.+|....+.-.-+|.....||.-|.
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 66666666666655555555555555543
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=83.26 E-value=8.5 Score=33.55 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 810 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAA 852 (1105)
Q Consensus 810 la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~q 852 (1105)
--+|+-+.-+||+.+|+.|..++..|..|+.+.+...+..+..
T Consensus 24 TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999777665543
No 138
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.92 E-value=32 Score=32.39 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.|+..+...+..|..-...|...|.-|-. -+-++.+=|+|+-...+.....|+-|+.||.++.
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER-------~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLER-------AKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544433 2233455688888899999999999999988665
No 139
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.53 E-value=0.37 Score=51.76 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=22.2
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3789998764433333332 223333 23467888999999999875
No 140
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=81.82 E-value=5.7 Score=40.54 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.+++||..+...+..|+.++..|.+++
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888887777
No 141
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.80 E-value=31 Score=31.59 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHH
Q 001297 827 KLSLQNAKLEKELLA 841 (1105)
Q Consensus 827 kL~~~N~qL~~El~~ 841 (1105)
.++..|.+|..+|..
T Consensus 80 ~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 80 AIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 445556666665544
No 142
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.27 E-value=19 Score=42.05 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
++...+..+..+|+++...|+++--.+ + .+|+....-+.++..||.+|+.++..+++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQ--l-snIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEK--V-QHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666665553322 2 66677777788888888899988888877
No 143
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.82 E-value=21 Score=35.27 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 783 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 783 ~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+..|.+|+..|..++..+.+ ++.+|+.+|..|.+-....+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~---------------------kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQ---------------------KLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666 66777777777766544444
No 144
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.81 E-value=0.75 Score=45.49 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344555555667789999999999999873
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.73 E-value=1.5 Score=51.09 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=46.7
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc--C--CCeEEEEeccCCCCCccccCC--------------C---CCCC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTMHG--------------D---QNSP 198 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G--~n~tIfaYGqTGSGKTyTm~G--------------~---~~~~ 198 (1105)
.-+||.|-|-+..-+++.+.+..|+.. ..+. | +--.|+-||+.|+|||++.-. + ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 356888887766666677777776652 3333 3 235789999999999976521 1 1234
Q ss_pred CchhHHHHHHHHhhc
Q 001297 199 GIIPLAIKDVFSIIQ 213 (1105)
Q Consensus 199 GIipra~~~LF~~i~ 213 (1105)
|--.+.++.+|....
T Consensus 257 Gese~~ir~lF~~A~ 271 (434)
T 4b4t_M 257 GEGAKLVRDAFALAK 271 (434)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 556666666666554
No 146
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=80.26 E-value=33 Score=32.30 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=24.2
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 711 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 711 ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+....|.++.++++....+|++..-.+++.+
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888877777776
No 147
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.17 E-value=0.62 Score=50.35 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=32.3
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHH-----HHHhcCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVV-----KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV-----~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.|.||.+.+.+..-+.+.+.+..++. ...--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 57889988765555555544433322 1111134456899999999999876
No 148
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.15 E-value=0.62 Score=49.93 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=31.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHH-----HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPV-----VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~pl-----V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+.||.+.+.+.....+.+. +..+ ...+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 47889999877666666542 2211 11111122345899999999999986
No 149
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.14 E-value=40 Score=31.72 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 001297 905 QARKQREAALEAALAEKEFLEDE 927 (1105)
Q Consensus 905 ~a~~er~~aLE~el~~k~~~eeE 927 (1105)
....++.+=||.|+.+|..+.++
T Consensus 87 n~aiErnalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 87 NQAIERNAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557777788888877766554
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.91 E-value=0.7 Score=50.88 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=32.1
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHh----cCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAM----EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l----~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+.||.|.+.+..-..+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 367888887655545555544444221 111 133457899999999999876
No 151
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.90 E-value=20 Score=34.50 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=10.5
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k 843 (1105)
+...|++-.-.|..|++..+
T Consensus 104 EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 104 EYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444
No 152
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.04 E-value=0.8 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=29.5
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|+||.++. ...+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 588988763 2334444442 333333211 123468899999999999874
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=77.83 E-value=0.79 Score=51.35 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=21.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+-..+..|-..+|+-||++|+|||.++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334445778889999999999999886
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.76 E-value=0.87 Score=48.45 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.7
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHH-HHHhcCC----CeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV-~~~l~G~----n~tIfaYGqTGSGKTyTm 191 (1105)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 5788988875433333322 111110 1122222 223899999999999987
No 155
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.64 E-value=21 Score=31.70 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001297 824 EVTKLSLQNAKLEKELLAARESMHSRGAAMQ 854 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq 854 (1105)
++..+......|..|...++.+.+.|...|+
T Consensus 42 e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 42 EVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666666666665443
No 156
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.62 E-value=0.85 Score=45.11 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 163 ~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 345555555667788999999999999763
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.49 E-value=1.2 Score=43.81 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.3
Q ss_pred eEEEEeccCCCCCccccC
Q 001297 175 GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~ 192 (1105)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999874
No 158
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.46 E-value=2 Score=37.54 Aligned_cols=45 Identities=16% Similarity=0.451 Sum_probs=31.1
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhh----cC--CCCCCCccccccee
Q 001297 1056 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSL----AC--SECPICRTKISDRL 1101 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl-~PCgH~~~C~~C~~----~~--~~CPiCR~~i~~~i 1101 (1105)
-..|.||++-...-+. ..|+|. |=..|.. .. ..||+||..+...+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3489999876543332 268887 8888854 12 57999999876543
No 159
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.04 E-value=18 Score=35.00 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k 843 (1105)
+...|++-.-.|..|++..+
T Consensus 106 EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 106 EYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 160
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.04 E-value=2.6 Score=49.02 Aligned_cols=74 Identities=27% Similarity=0.475 Sum_probs=47.4
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhc--CC--CeEEEEeccCCCCCccccC--------------CC---CCCCC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G~--n~tIfaYGqTGSGKTyTm~--------------G~---~~~~G 199 (1105)
-+||.|-|-+.--+.+.+.+..|+.. ..+. |. .-.|+-||+.|+|||+..- |+ ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 56777776554445555555555542 2332 32 3469999999999997652 11 23457
Q ss_pred chhHHHHHHHHhhccC
Q 001297 200 IIPLAIKDVFSIIQDT 215 (1105)
Q Consensus 200 Iipra~~~LF~~i~~~ 215 (1105)
--++.+.++|......
T Consensus 249 e~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 249 EGPRMVRDVFRLAREN 264 (428)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 8888899999877543
No 161
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.48 E-value=0.73 Score=51.17 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=28.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.|.||.+++. +.+... +...++.+..+.|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 5889998764 233322 233344444455999999999999876
No 162
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.63 E-value=26 Score=32.73 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQK 799 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~k 799 (1105)
..-.|++-.|+..|.++...|..++++
T Consensus 82 RadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 82 RHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555544
No 163
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.40 E-value=36 Score=32.02 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhhhHH----HHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFE----LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~e----l~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..+.+..|++.|++..-+ ++....++..|.++|+++.++...|+++...+...+
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 456667777777765544 555567899999999999999999999988877776
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.39 E-value=0.68 Score=50.17 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHH-HHHhcCC----CeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV-~~~l~G~----n~tIfaYGqTGSGKTyTm 191 (1105)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4778888775543333332 111110 1122222 223899999999999987
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.22 E-value=1.5 Score=45.37 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=28.0
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHh-cCCCeEEEEeccCCCCCccccC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l-~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
++||.+++. ..+..++. .+..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~-----~l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIG-----ALKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHH-----HHHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 667766552 23344444 223333 3356788999999999999874
No 166
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.98 E-value=0.91 Score=41.23 Aligned_cols=46 Identities=26% Similarity=0.767 Sum_probs=36.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001297 1056 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1103 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~i 1103 (1105)
+..|..|.-..++.| .|.-.++|-.|-..+ ..||||..++...|++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 347999999999877 465445999997665 4499999998887764
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.81 E-value=1.3 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.4
Q ss_pred cCCCeEEEEeccCCCCCcccc
Q 001297 171 EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm 191 (1105)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566788999999999999976
No 168
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.71 E-value=40 Score=30.16 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=57.4
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccccCCCCCCc
Q 001297 818 LKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDP 897 (1105)
Q Consensus 818 lk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~~w~~~ 897 (1105)
+++|-.+|..+..+|.+|..|+...+..+..|+. +
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~------------------K--------------------------- 36 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE------------------K--------------------------- 36 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H---------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------------H---------------------------
Confidence 5667778888999999999998888877665532 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 898 DDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 898 ~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
......+-..+|+++...+..-+++.--.-+++.+.+.|..||
T Consensus 37 ------yE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 37 ------LQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334456778888888777887766678888888898888
No 169
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.24 E-value=39 Score=32.04 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH-------HHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 688 MQQTVTRLMSQCNEKAFELEIK-------SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 688 ~~q~~~~L~~~l~e~~~el~~k-------~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.-++..++..+++....|+.. .++...|+..++++.....+|+.+|+.|+..+
T Consensus 39 l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 39 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444432 23566677777777777777777777777766
No 170
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.13 E-value=1 Score=49.05 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=31.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc---CCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME---GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~---G~n~tIfaYGqTGSGKTyTm 191 (1105)
...||.+.+.+..-..+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887544444444444443321 1122 23568999999999999876
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.79 E-value=3.8 Score=47.78 Aligned_cols=75 Identities=21% Similarity=0.375 Sum_probs=48.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc--CC--CeEEEEeccCCCCCccccC--------------CC---CCCC
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G~--n~tIfaYGqTGSGKTyTm~--------------G~---~~~~ 198 (1105)
..+||.|-|-+..-+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||++.- |+ ....
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 356788777655555566656555542 2333 32 3579999999999998652 11 2345
Q ss_pred CchhHHHHHHHHhhccC
Q 001297 199 GIIPLAIKDVFSIIQDT 215 (1105)
Q Consensus 199 GIipra~~~LF~~i~~~ 215 (1105)
|--...+..+|......
T Consensus 257 Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 257 GESARIIREMFAYAKEH 273 (437)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 77788888888877543
No 172
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.19 E-value=50 Score=38.51 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
|+++.+++.+...++..++..+++++-.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKK 456 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhh
Confidence 3344444444444444444444443333
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.04 E-value=0.99 Score=51.03 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=31.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHH----hcCCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAA----MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~----l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
...||.+++....-..+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35688887754444444444433332111 2345668999999999999876
No 174
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.72 E-value=35 Score=31.04 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Q 001297 761 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 761 ~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~ 840 (1105)
.|..|+..+.. |.-.+-.|.++|..|.++.+.+... ....+......++.+|-..|..+..++.+|..|+.
T Consensus 10 ~mq~LNdRlAs-------yIdKVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 10 ELQELNDRFAN-------LIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556643333 3445555666666666666655543 23345666788888999999999999999999988
Q ss_pred HHHHHHHHHH
Q 001297 841 AARESMHSRG 850 (1105)
Q Consensus 841 ~~k~~~~~~e 850 (1105)
..++.+..+.
T Consensus 81 nl~~~~~~~k 90 (93)
T 3s4r_A 81 NLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777666554
No 175
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.41 E-value=1.3e+02 Score=34.82 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
+++++..+|++++.++.+....+..-.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 5666666666666665555544444333
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.15 E-value=1.7 Score=50.67 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=28.5
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..|+||..... ..+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g-~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVG-PGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCC-TTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCC-CchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 35889875522 23333333 22223322 2213468899999999999884
No 177
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=70.89 E-value=62 Score=30.93 Aligned_cols=17 Identities=18% Similarity=0.622 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILE 669 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~ 669 (1105)
-|++++.+..++++.+-
T Consensus 22 s~~~eleEnqeEL~iVg 38 (167)
T 4gkw_A 22 SLQKQLEENQEELEIVG 38 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 178
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.52 E-value=54 Score=38.45 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred ccccccccceEEeCCCCccc
Q 001297 1060 KVCFESPTAAILLPCRHFCL 1079 (1105)
Q Consensus 1060 ~IC~~~~~~~vl~PCgH~~~ 1079 (1105)
.-|-..-+-+|+.|=||--+
T Consensus 440 ~sCsktitktv~gpdG~kev 459 (562)
T 3ghg_A 440 RSCSKTVTKTVIGPDGHKEV 459 (562)
T ss_dssp --------------------
T ss_pred ccccceeeeeeeCCCCCcee
Confidence 34666677888899888744
No 179
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.51 E-value=1.9 Score=44.64 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3456678876 688899999999873
No 180
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=70.16 E-value=2.1 Score=43.50 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677866 677899999999764
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.02 E-value=1 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=18.0
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+....|+-||++|+|||+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455689999999999999873
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.96 E-value=0.81 Score=48.54 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCeEEEEeccCCCCCcccc
Q 001297 173 VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm 191 (1105)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4457999999999999976
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.96 E-value=2.2 Score=42.57 Aligned_cols=65 Identities=28% Similarity=0.540 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001297 1030 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1095 (1105)
Q Consensus 1030 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~IC~~~~-----~~~vl~PCgH~~~C~~C~~~~~-----~CPiCR~ 1095 (1105)
.+.+|+.+++.+..+..........+...|.+|.... ...+-.-|.|. +|..|....+ .|-+|+.
T Consensus 42 Ri~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 42 RLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHH
Confidence 3445555555543332222111223577999998863 33444556665 6777753322 2666654
No 184
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.75 E-value=1.9 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=18.7
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 455677876 677889999999874
No 185
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=69.49 E-value=1.3e+02 Score=32.58 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001297 613 DLLVEQV 619 (1105)
Q Consensus 613 d~l~eq~ 619 (1105)
+.||+++
T Consensus 14 e~lr~~l 20 (273)
T 3s84_A 14 EKLKEEI 20 (273)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.20 E-value=1.7 Score=46.27 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=28.5
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHh-----c----CCCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAM-----E----GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l-----~----G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+.||.|.+.+..-+.+.+ ++..+. . .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-----LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-----HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-----HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888875443333332 222221 1 23446999999999999876
No 187
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.09 E-value=71 Score=29.37 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 691 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 691 ~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+..|+.+.+...-..+...+..+...++...++.++..|++++..++..+
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555555555555555444444
No 188
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.46 E-value=65 Score=31.85 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|+.+++.|...+..+..+++.|...+..+++.+.....++..++.++..++..-
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666667777777777788877777777777777777777644
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.95 E-value=1.4 Score=49.14 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.0
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---CeEEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~---n~tIfaYGqTGSGKTyTm 191 (1105)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 56788877554444444444444321 233442 246899999999999876
No 190
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.85 E-value=75 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=11.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.++.++..++.++..+..+|..|.+++
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444444444444433
No 191
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=67.54 E-value=3.2 Score=46.42 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=27.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCC-e--EEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-G--TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n-~--tIfaYGqTGSGKTyTm 191 (1105)
|.++.+++ ++.....+. ..+..++.|.. . .++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44555544 333333222 24445554533 4 7899999999999986
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.48 E-value=1.7 Score=47.41 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.7
Q ss_pred CCCeEEEEeccCCCCCcccc
Q 001297 172 GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm 191 (1105)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44457999999999999976
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.94 E-value=10 Score=44.13 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=62.7
Q ss_pred EEEEeCCCChhh-hccCCeEEEeecCCEEE---ecCCCC---------CcceeeceecCCCCChhHHHhhhhHHHHH-HH
Q 001297 104 VTIRFRPLSERE-FQRGDEIAWYADGDKIV---RNEYNP---------ATAYAFDRVFGPHANSQEVYDVAARPVVK-AA 169 (1105)
Q Consensus 104 V~vRvRP~~~~E-~~~~~~~~~~~~~~~i~---~~~~~~---------~~~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~ 169 (1105)
.+|++......+ +..|+.+.+..+...++ ....++ .-.-+||.|-|-+.--+++.+.+.-|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 355666655444 45565555544433322 111111 11345666665544445555555555431 23
Q ss_pred hc--C--CCeEEEEeccCCCCCccccC--------------CC---CCCCCchhHHHHHHHHhhccC
Q 001297 170 ME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1105)
Q Consensus 170 l~--G--~n~tIfaYGqTGSGKTyTm~--------------G~---~~~~GIipra~~~LF~~i~~~ 215 (1105)
+. | +--.|+-||+.|+|||...- |. ....|--.+.+..+|......
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 32 3 33579999999999997552 21 234688889999999887654
No 194
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=66.71 E-value=2.3 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=17.0
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|....|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433349999999999999863
No 195
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.35 E-value=44 Score=29.01 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+.++|++++.++.+|+.+|..|+.++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467889999999999999999999998
No 196
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.91 E-value=30 Score=31.44 Aligned_cols=78 Identities=24% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL-------RKKVQSQETENEKLKLEHVQLS 787 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el-------~~~l~~q~~E~e~lk~e~~~L~ 787 (1105)
.|..+|..|+.-+...+..||.||....++-. .-+.+.-| +.-..+...-.|++..++..|.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~-----------~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKI-----------VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555666666666666666666655422111 00111111 1222344555666666677777
Q ss_pred hhhhhHHHHHHHHHHH
Q 001297 788 EENSGLHVQNQKLAEE 803 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~e 803 (1105)
++...|..++.+|..+
T Consensus 75 ~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 75 EQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777666653
No 197
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.98 E-value=2.8 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..+++|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556778877 688899999999874
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=64.83 E-value=3 Score=46.64 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=30.2
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCCe--EEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG--TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~--tIfaYGqTGSGKTyTm 191 (1105)
+.||.+++. +.+.. ....++..+..|... .|+-||++|+|||+..
T Consensus 41 ~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 567777763 33332 233455555566654 8999999999999876
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=64.34 E-value=1.9 Score=49.24 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHH-HHhc---CCCeEEEEeccCCCCCcccc
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAME---GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~---G~n~tIfaYGqTGSGKTyTm 191 (1105)
..+.||.+.+...--+.+...+..++.. .++. .....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4577888887544334444433333321 1111 22357999999999999876
No 200
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.33 E-value=1.8 Score=45.55 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4456678877 678999999999874
No 201
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.19 E-value=90 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 827 KLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 827 kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
+..+.+..|+.+|..+++....|++|-
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQA 48 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQA 48 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556668888888888888887643
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.76 E-value=2.9 Score=46.50 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=25.7
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|+.+++ |+.+.+ .+-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3566664 344433 23333345533237889999999999874
No 203
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.66 E-value=3.2 Score=48.21 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+++..++..-.+.|...|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555566566789999999999999983
No 204
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.65 E-value=51 Score=29.63 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
.+.......|+..+..|.+++..|..+ +.+.-++..+|.+....|...+....
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~q---------------------l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGS---------------------MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566777777777777777777 22333466666666666666665554
No 205
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.28 E-value=1e+02 Score=29.13 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhhhhhhcccccccccccccCccccccCC
Q 001297 813 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDS 892 (1105)
Q Consensus 813 a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qiq~v~~~ar~ylq~l~~~r~E~l~~~~~~~~~~~~~~~~~ 892 (1105)
....++.+|-.+|..+..+|.+|..|+...+..+..++.. -.+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K------------------yE~------------------- 59 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK------------------LQE------------------- 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hHH-------------------
Confidence 3455677777788888889999999988888777666421 111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001297 893 WNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAK 955 (1105)
Q Consensus 893 ~w~~~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~k 955 (1105)
....-..+|+++...+..-++..--.-+++.+.+.|..||.=|...++.
T Consensus 60 --------------E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 60 --------------EMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122234566666666555555544456777777888877555555543
No 206
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=63.22 E-value=2 Score=47.63 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=30.4
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---CeEEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~---n~tIfaYGqTGSGKTyTm 191 (1105)
..||.|.+....-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888877544444444444433321 122222 346999999999999876
No 207
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.93 E-value=2.5 Score=45.37 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.++..++.|.| +++.++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34556677876 688899999999874
No 208
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.69 E-value=3.3 Score=43.20 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678877 567789999999874
No 209
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=62.26 E-value=3.3 Score=42.67 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677877 677789999999875
No 210
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.23 E-value=1.3 Score=48.13 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=27.0
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCCC----eEEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~n----~tIfaYGqTGSGKTyTm 191 (1105)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777765544444555545444432 2333332 23899999999999876
No 211
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.17 E-value=4.2 Score=45.54 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=28.3
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcC-CCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G-~n~tIfaYGqTGSGKTyTm 191 (1105)
.|.++.+++. ++..+.+.. .+..++.| ....|+-||++|+|||+.+
T Consensus 16 ~~~p~~l~gr----~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPFR----EDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTTC----HHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCCh----HHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 4555555543 333333322 34444444 4558999999999999876
No 212
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.09 E-value=22 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.075 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001297 707 EIKSADNRILQEQLQNKCSENKKLQEKVNL 736 (1105)
Q Consensus 707 ~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~ 736 (1105)
+...++...+.++|.-+.-+.-+++..|..
T Consensus 44 ~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 44 ERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333445555555666666655566655544
No 213
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.62 E-value=1.1e+02 Score=29.12 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHH-------hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 684 SMVDMQQTVTRLMSQCNEKAFELEIKSA-------DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 684 ~~~e~~q~~~~L~~~l~e~~~el~~k~a-------e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
-+++|++-+..+..+++|--.||++--- -...+|.+=..-.-++..|+.++..+++.+
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 4668888888888999998888887522 333444443333444444444444444444
No 214
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.53 E-value=52 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=15.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHH---hhhhhHHHHHH
Q 001297 767 KKVQSQETENEKLKLEHVQLS---EENSGLHVQNQ 798 (1105)
Q Consensus 767 ~~l~~q~~E~e~lk~e~~~L~---Ee~~~L~~e~~ 798 (1105)
..+.+...+|++++.+...+. |.+.-|..+..
T Consensus 16 eaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~ 50 (94)
T 3jsv_C 16 EALVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566655554444 44444444443
No 215
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.51 E-value=4.9 Score=46.40 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=50.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhc--CC--CeEEEEeccCCCCCccccC--------------CC---CCCCC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G~--n~tIfaYGqTGSGKTyTm~--------------G~---~~~~G 199 (1105)
-+||.|-|-+..-+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||+..- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 56788877665556666666666652 3333 32 3469999999999998652 11 23457
Q ss_pred chhHHHHHHHHhhccC
Q 001297 200 IIPLAIKDVFSIIQDT 215 (1105)
Q Consensus 200 Iipra~~~LF~~i~~~ 215 (1105)
--.+.++.+|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7788899999887654
No 216
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=61.39 E-value=2.2 Score=48.13 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=30.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---CeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~---n~tIfaYGqTGSGKTyTm 191 (1105)
...||.|.+....-..+...+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888877554444454444433221 223332 235888999999999876
No 217
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=61.39 E-value=66 Score=30.81 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 001297 722 NKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 722 ~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
..+..+++|++++..|+..+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788899999999998843
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.02 E-value=3.2 Score=49.15 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHH-----HHHhcCCCeEEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVV-----KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV-----~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
..||.+.+....-..+++.+..++- ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666544444455554443321 1111244567999999999999876
No 219
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.91 E-value=1.9 Score=43.92 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccC
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..+++|.+ ++..|+||+|||++..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 34556765 5678999999999863
No 220
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.70 E-value=3.4 Score=46.83 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=21.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
++..++.--.+.|...|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4455555556688999999999999983
No 221
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.70 E-value=3.1 Score=46.02 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|+.+++...- ...+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46666654322 2233344445533338899999999999873
No 222
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=60.15 E-value=2.5e+02 Score=32.59 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001297 655 EREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 655 ~~qlrdKeeei~~L~qki~ 673 (1105)
-+.+.|...-|..++..+.
T Consensus 8 ~r~v~dl~~Wl~E~~~~L~ 26 (450)
T 3r6n_A 8 KHVTSECLGWMRQQRAEMD 26 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhcC
Confidence 4667777888887777774
No 223
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.88 E-value=3.7 Score=43.37 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445677876 567789999999875
No 224
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.24 E-value=4.1 Score=42.22 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4556788774 77799999999874
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.21 E-value=4.2 Score=47.70 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=48.2
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhc--C--CCeEEEEeccCCCCCccccC--------------CC---CCCCC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~--G--~n~tIfaYGqTGSGKTyTm~--------------G~---~~~~G 199 (1105)
.+||.|-|-+.--+++.+.+.-|+.. ..+. | .--.|+-||+.|+|||+..- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 56788877655555566655555542 2333 3 24579999999999997642 11 23457
Q ss_pred chhHHHHHHHHhhccC
Q 001297 200 IIPLAIKDVFSIIQDT 215 (1105)
Q Consensus 200 Iipra~~~LF~~i~~~ 215 (1105)
--.+.+..+|......
T Consensus 286 esek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 286 EGARMVRELFEMARTK 301 (467)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888876543
No 226
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=59.11 E-value=41 Score=34.33 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=32.0
Q ss_pred HhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 697 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 697 ~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+|+.--+.......+|..|.+||..+..|+..|+++|+.++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444445566888999999999999999999999999887
No 227
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=59.05 E-value=1.1e+02 Score=29.51 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=56.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCC---------------CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND---------------PDGSKVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~---------------~~~~~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
|+|=+=.|+.++..|+.=+.-....|+|...-+.-+ |+....++..|.+.+=.|..+|+.|-.-+
T Consensus 1 MaDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsL 80 (132)
T 1ykh_B 1 MTDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (132)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566777888888877777777777644432222 12223456678888888889999888877
Q ss_pred HHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHH
Q 001297 673 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIK 709 (1105)
Q Consensus 673 ~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k 709 (1105)
+.... +..+-...|.+|..++.+..-+|+.+
T Consensus 81 P~~~~------see~Q~~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 81 PGVDV------SAEEQLRKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp TTTTC------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63221 22234446666655555544444433
No 228
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=58.23 E-value=2.1e+02 Score=33.47 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 001297 776 NEKLKLEHVQLSEENSGLHVQNQK 799 (1105)
Q Consensus 776 ~e~lk~e~~~L~Ee~~~L~~e~~k 799 (1105)
+..|+.|+......|..++...++
T Consensus 11 la~yq~elarvqkana~aka~Ye~ 34 (497)
T 3iox_A 11 LTAYQTELARVQKANADAKAAYEA 34 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444
No 229
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=58.18 E-value=2.4 Score=49.48 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=29.3
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcC---CCeEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G---~n~tIfaYGqTGSGKTyTm 191 (1105)
...||.|.+.+..-..+...+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888876443333333333333221 12222 2357889999999999876
No 230
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=58.13 E-value=2.9 Score=45.75 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=26.9
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHh--cCCCeEEEEeccCCCCCcccc
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l--~G~n~tIfaYGqTGSGKTyTm 191 (1105)
..||.+++.. .+... ...++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4577766543 33222 222333332 234567889999999999876
No 231
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.03 E-value=15 Score=35.75 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=11.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
-+..|++||.+++..+..++.+|..||..+
T Consensus 104 r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 104 LNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777654
No 232
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=57.89 E-value=1.1e+02 Score=30.33 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=66.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCC---------------CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD---------------GSKVQIQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~---------------~~~~Q~q~L~~qlrdKeeei~~L~qki 672 (1105)
|+|=+=.|+.++..|+.=|.-....|+|-..-+.-+|. ....++..|.+.|=.|..+|+.|-.-+
T Consensus 1 MaDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL 80 (151)
T 1yke_B 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (151)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556677888888888787777778775554433321 223456678888888888888888777
Q ss_pred HHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 673 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 673 ~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.... +..+-...|.+|..+++ ...++|..+-.+-..+.++|+.+-..+
T Consensus 81 Pg~~~------seeeQ~~ri~~Le~E~~--------------~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 81 PGVDV------SAEEQLRKIDMLQKKLV--------------EVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp TTSSS------CHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC------CHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62221 12233345555544444 444444455555555555555555554
No 233
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=57.81 E-value=3.8 Score=45.03 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+.-++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677774445789999999999874
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.76 E-value=4.9 Score=46.90 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCC--eEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN--GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n--~tIfaYGqTGSGKTyTm 191 (1105)
.|.||.|.+ |+++... +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 4445442 2345666666653 36888999999999876
No 235
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.70 E-value=4.6 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.3
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999999763
No 236
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.55 E-value=23 Score=29.78 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHH
Q 001297 770 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKE 809 (1105)
Q Consensus 770 ~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~ 809 (1105)
++++.+.+.++.+...|..+|..|..+...|..|-.+-++
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777766666664444333
No 237
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=56.98 E-value=4.5 Score=42.96 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=18.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3445677866 567789999999874
No 238
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.89 E-value=17 Score=32.04 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHH
Q 001297 758 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 795 (1105)
Q Consensus 758 ~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~ 795 (1105)
.+..+.+|+.++-.|..+|+++.+....|.+....+..
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556889999999999999999999888887766654
No 239
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.88 E-value=4.4 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.| +++.++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 3445668876 456679999999884
No 240
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=56.75 E-value=47 Score=30.69 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q 001297 724 CSENKKLQEKVNLLEQQLACQN 745 (1105)
Q Consensus 724 ~~e~~~l~~kl~~lk~~l~~~~ 745 (1105)
..+...++.||..||+++++..
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777888888875443
No 241
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.70 E-value=4.7 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3456678888 688999999999874
No 242
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.47 E-value=4.9 Score=41.89 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345677877 567789999999874
No 243
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.45 E-value=3 Score=46.46 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.8
Q ss_pred CCCeEEEEeccCCCCCcccc
Q 001297 172 GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm 191 (1105)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999999876
No 244
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.31 E-value=1.4e+02 Score=28.46 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 691 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 691 ~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
+|+.++..+.....+++-...-+..|+.+|.+++.++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444333333333344555555555555544
No 245
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=56.30 E-value=5.9 Score=38.22 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.0
Q ss_pred CCeEEEEeccCCCCCccccC
Q 001297 173 VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.+..|+-||.+|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34458889999999998764
No 246
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.20 E-value=67 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHH
Q 001297 705 ELEIKSADNRILQEQLQNKCSENKKLQEKVNL 736 (1105)
Q Consensus 705 el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~ 736 (1105)
+-+...++...+.++|.-+..+.-+++..|..
T Consensus 36 ~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 36 EQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333445555566666666665566555544
No 247
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.07 E-value=4.2 Score=42.72 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455566664 5678899999999765
No 248
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=55.93 E-value=83 Score=27.78 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+...+.++|++++.++.+|+.+|..|+.++
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455677888899999999999999999888
No 249
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.88 E-value=90 Score=29.71 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
..|+.|++|+..|..+...+..+-+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ 43 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVL 43 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777777777776444
No 250
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=55.88 E-value=9.1 Score=46.22 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 001297 935 SKRREEALENDL 946 (1105)
Q Consensus 935 ~kk~~~~L~~EL 946 (1105)
++.++..|..||
T Consensus 516 lq~qL~~L~~el 527 (575)
T 2i1j_A 516 LHNQLKALKQDL 527 (575)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334446667777
No 251
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.59 E-value=3.4 Score=45.66 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=27.3
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHh--cCCCeEEEEeccCCCCCcccc
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l--~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||.+.+. +.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 46766653 344432 223444433 344567999999999999876
No 252
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.31 E-value=1e+02 Score=29.54 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQN 797 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~ 797 (1105)
+++..-+|...|..-+..|..+.
T Consensus 99 em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 99 EMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 253
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.08 E-value=15 Score=33.83 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhHH---------HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAE-EASYA---------KELASAAAVELKNLAGEVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~-e~~~~---------k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El 839 (1105)
+.+|+.|+.|+..|.+++..|+.++++..- -+|.. .-.|+.|..+.+ +.+.+|++++.+|+.-+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~---~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLR---EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999988432 12211 123444433332 56677777776666543
No 254
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=54.84 E-value=34 Score=27.37 Aligned_cols=40 Identities=33% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAA 814 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~ 814 (1105)
+.|.|+.|+..|-.|...=..++.||-.|.+.-|++.+.+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4589999999999999999999999999999888888776
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.95 E-value=5.1 Score=43.25 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCCeEEEEeccCCCCCccccC
Q 001297 172 GVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.-...|.-.|+||||||.+|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 345678889999999999983
No 256
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.19 E-value=16 Score=31.27 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 699 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 699 l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.++....+..|-...+.|+..|+.+..+|.+|+.+++..++-+
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556667778889999999999999999999999999887
No 257
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.09 E-value=3.7 Score=42.36 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 455667876 467789999999874
No 258
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.97 E-value=46 Score=29.37 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=25.7
Q ss_pred hhHHHHHH----HHhHHHHHHHHhhhhhHHHHHHHHH
Q 001297 702 KAFELEIK----SADNRILQEQLQNKCSENKKLQEKV 734 (1105)
Q Consensus 702 ~~~el~~k----~ae~~~lqeqL~~a~~e~~~l~~kl 734 (1105)
--++|+.| -++...||+||..+++++.-|+.+|
T Consensus 41 ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 41 ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566655 3599999999999999888887765
No 259
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=52.66 E-value=3.8 Score=37.35 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=23.0
Q ss_pred ccccccccc-ccceEE--eCCCCcccchhhhhc
Q 001297 1057 HMCKVCFES-PTAAIL--LPCRHFCLCKSCSLA 1086 (1105)
Q Consensus 1057 ~~C~IC~~~-~~~~vl--~PCgH~~~C~~C~~~ 1086 (1105)
..|.+|.+. ....+. ++|+|. ||..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999975 556666 899999 99999553
No 260
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.59 E-value=2e+02 Score=32.53 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 001297 762 VDELRKKVQSQETENEKLKLEH 783 (1105)
Q Consensus 762 ~~el~~~l~~q~~E~e~lk~e~ 783 (1105)
|.-|+..|..|..+|.+|+..+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665554
No 261
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.28 E-value=6.8 Score=42.64 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHhcCC---CeEEEEeccCCCCCccccC
Q 001297 163 RPVVKAAMEGV---NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 163 ~plV~~~l~G~---n~tIfaYGqTGSGKTyTm~ 192 (1105)
...+..+++|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34467788887 3489999999999998763
No 262
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.24 E-value=5.8 Score=46.14 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyT 190 (1105)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566778667889999999999977
No 263
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.78 E-value=39 Score=27.39 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=6.5
Q ss_pred hhhhhHHHHHHHHHH
Q 001297 788 EENSGLHVQNQKLAE 802 (1105)
Q Consensus 788 Ee~~~L~~e~~kL~~ 802 (1105)
.++..|..+|++|.+
T Consensus 16 ~~l~~L~~rN~rL~~ 30 (51)
T 3m91_A 16 ARIDSLAARNSKLME 30 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 264
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.54 E-value=4.4 Score=42.58 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHhcCCC--eEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVN--GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n--~tIfaYGqTGSGKTyTm~ 192 (1105)
+..++.|.- -+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344555532 469999999999998864
No 265
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=51.36 E-value=4.7 Score=38.99 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCCeEEEEeccCCCCCcccc
Q 001297 172 GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm 191 (1105)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999865
No 266
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.18 E-value=8.7 Score=44.99 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.2
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.||.|++. ++.. ..++..+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i----~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHH----HHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46666654 3222 234444444556678899999999999874
No 267
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.08 E-value=6.6 Score=43.70 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.0
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999987
No 268
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=50.83 E-value=6.2 Score=44.55 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445677877 677899999999764
No 269
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=50.64 E-value=6.9 Score=39.77 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.5
Q ss_pred eEEEEeccCCCCCccccC
Q 001297 175 GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~ 192 (1105)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999998763
No 270
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=50.34 E-value=66 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001297 651 IQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 651 ~q~L~~qlrdKeeei~~L~qki 672 (1105)
+..|+.+++.|+.+|..|.-.+
T Consensus 20 l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 20 LAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777776665544
No 271
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=50.30 E-value=2.5e+02 Score=29.63 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=18.5
Q ss_pred hhhhccCCCCCchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001297 636 LVDQSVNDPDGSKVQIQNLEREIQEKRR-QMRILEQRI 672 (1105)
Q Consensus 636 l~e~~~~~~~~~~~Q~q~L~~qlrdKee-ei~~L~qki 672 (1105)
|-+.-.++.++.+.++.-...+++.+-+ .++.+.+++
T Consensus 82 lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L 119 (243)
T 2a01_A 82 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKV 119 (243)
T ss_dssp HHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455566677777665544444433322 344444433
No 272
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=50.13 E-value=1.3e+02 Score=26.31 Aligned_cols=53 Identities=21% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
...+..|+.+.+.-.-.++...+......+++..++.++..|++++..++.++
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555566666666666666666666666666666
No 273
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.70 E-value=34 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 818 LKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 818 lk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
...|..+|..|+.+|..|..++..++.+...|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668888888888888888888877777754
No 274
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.34 E-value=1.9e+02 Score=33.28 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 828 LSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 828 L~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
..+.++.|...|.+.|....+-++|-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 34455556666777776666665543
No 275
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.22 E-value=6.2 Score=43.89 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345667774455788899999999864
No 276
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.19 E-value=8.8 Score=43.24 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHhcC---CCeEEEE--eccCCCCCcccc
Q 001297 167 KAAMEG---VNGTVFA--YGVTSSGKTHTM 191 (1105)
Q Consensus 167 ~~~l~G---~n~tIfa--YGqTGSGKTyTm 191 (1105)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 455555 5567888 999999999876
No 277
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=49.19 E-value=6.6 Score=41.50 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccC
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34556655 6778899999999863
No 278
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.08 E-value=6.2 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.6
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999976
No 279
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.01 E-value=8 Score=45.15 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=28.0
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 144 FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
||.|++ |+.+.. ....+...+-.|.-..|+-||++|+|||+..
T Consensus 25 l~~ivG----q~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYIG----QQHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCCS----CHHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhCC----cHHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 455543 455542 1234444455566678999999999999876
No 280
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=49.00 E-value=6.5 Score=44.13 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345667775566788899999999874
No 281
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.16 E-value=37 Score=28.20 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 818 LKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 818 lk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
...|-.+|..|+.+|..|..++..++.++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777777777777777776666554
No 282
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.85 E-value=83 Score=27.45 Aligned_cols=65 Identities=29% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 839 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El 839 (1105)
|++.+..|+..|.+-+..|.+-..-|-....--+.--..+..+++.+-.-.+++...+..|++|+
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443332222221111111223455555555556666666666666554
No 283
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.73 E-value=7 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.5
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 455667876 677899999999764
No 284
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.51 E-value=7.6 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.2
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345667766 567789999999875
No 285
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=47.50 E-value=1.1e+02 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 001297 829 SLQNAKLEKELLAARESMH 847 (1105)
Q Consensus 829 ~~~N~qL~~El~~~k~~~~ 847 (1105)
++....|+.+|.+.++...
T Consensus 114 eASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 114 DASRQSLRRDLDASREAKK 132 (146)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555444433
No 286
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=47.24 E-value=5.2 Score=47.19 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=28.6
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHH-----hcC----CCeEEEEeccCCCCCcccc
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAA-----MEG----VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~~~-----l~G----~n~tIfaYGqTGSGKTyTm 191 (1105)
..++||.|.+.+..-.++.+ ++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e-----~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKE-----VVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHH-----HHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-----HHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 34678888775443333332 22221 222 2345999999999999876
No 287
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.87 E-value=6.2 Score=42.79 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.8
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|+-||++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 368999999999999876
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=46.63 E-value=14 Score=40.21 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=22.5
Q ss_pred hhHHHHHHHhcCC-----CeEEEEeccCCCCCcccc
Q 001297 161 AARPVVKAAMEGV-----NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 161 ~~~plV~~~l~G~-----n~tIfaYGqTGSGKTyTm 191 (1105)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4555666666553 346889999999999864
No 289
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.52 E-value=8 Score=46.01 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.9
Q ss_pred hcCCCeEEEEeccCCCCCccccC
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
-.|.+ |...|+||||||.||.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 36766 6778999999999873
No 290
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=46.16 E-value=75 Score=29.71 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGEA---SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 726 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~~---s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e 726 (1105)
.+++|.+++...+.++....||+...... -|. .+|.. . |..-...
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPD----------------evNK~------------t----l~~R~~~ 70 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPD----------------ELNKR------------T----LTDREGV 70 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------HHHHH------------H----HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------HHHHH------------H----HHHHHHH
Confidence 36788888888888888888888544321 222 11211 1 2223556
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 001297 727 NKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 727 ~~~l~~kl~~lk~~l~~~~e 746 (1105)
...|+.||+.||+++++...
T Consensus 71 Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 71 AVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999977766
No 291
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.16 E-value=7.9 Score=46.43 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++..+..|.+.++++ ++||||||++++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444445576655555 999999999975
No 292
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.07 E-value=9.8 Score=40.66 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=29.2
Q ss_pred ccccccccccccceEEeC-CCCcccchhhhhc------CCCCCCCcccccceee
Q 001297 1056 SHMCKVCFESPTAAILLP-CRHFCLCKSCSLA------CSECPICRTKISDRLF 1102 (1105)
Q Consensus 1056 ~~~C~IC~~~~~~~vl~P-CgH~~~C~~C~~~------~~~CPiCR~~i~~~i~ 1102 (1105)
-..|.+|++--.--+.-| |+|. |=..|... -..||.|+.+...-++
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 458999966544443333 5555 66677432 2479999998776543
No 293
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.04 E-value=27 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.-|..|+..+..|...+..|..+|+.|-.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454444444444444444
No 294
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=45.86 E-value=89 Score=27.47 Aligned_cols=26 Identities=8% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIEN 675 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s 675 (1105)
.+++|.+++...+.++....||+...
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA 31 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDA 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888544
No 295
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.72 E-value=68 Score=28.35 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001297 706 LEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 706 l~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
|..-.+++-..+.+|.+++.++.+|..++..++.++-+
T Consensus 33 Ls~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 33 MEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335688888899999999999999999999998844
No 296
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.27 E-value=8.6 Score=43.32 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||.++
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 445677877 467889999999865
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.19 E-value=6.6 Score=44.70 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccC
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..+.-.-...|.-.|+||||||.+|.
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 33333345678899999999999983
No 298
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.82 E-value=21 Score=30.92 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001297 757 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 757 ~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
+++..+.+..+.++.+.+-|+.++.++....++...|..+..|+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444556667777777777777777777777777665
No 299
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.81 E-value=5.5 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHhcCCCeEEEEeccCCCCCcccc
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
..+..|. .|+-||++|+|||+.+
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHH
Confidence 3334443 5788999999999987
No 300
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.66 E-value=1.3e+02 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHH
Q 001297 648 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 727 (1105)
Q Consensus 648 ~~Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~ 727 (1105)
-.+|..|.+++...+.+++.+...-.. -+.+|...|..|.++|++.. .+.+.|-.++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~---------~v~ql~~~i~~Le~eL~e~r--------------~~~q~a~~e~ 70 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQR---------VVLQLKGHVSELEADLAEQQ--------------HLRQQAADDC 70 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 346777777777777777766332211 12345555555555555432 2234555566
Q ss_pred HHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQL 741 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l 741 (1105)
..|+.+++.++.+.
T Consensus 71 e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 71 EFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665444
No 301
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=44.42 E-value=5 Score=47.60 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=28.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHH-HHhcCC----CeEEEEeccCCCCCcccc
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~----n~tIfaYGqTGSGKTyTm 191 (1105)
..++||.|.+.+..-..+.+ ++..+-. ..+..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 34778888775433333322 1111100 122222 234899999999999876
No 302
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.39 E-value=1e+02 Score=27.53 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV-DELRKKVQSQETENEKLKLEHVQLSEENSG 792 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~-~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~ 792 (1105)
+.|+.|+..+..+...+.-+++.++..+-. ....+ .|+. .-+.=..++-.+++....+.-.+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed--------------fk~KyE~E~~-~R~~~E~d~~~LrkdvD~a~l~r~d 67 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMR--------------LREKLQEEML-QREEAENTLQSFRQDVDNASLARLD 67 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456667777777777777777766665500 00000 1111 0111134566667777777777777
Q ss_pred HHHHHHHHHHHH
Q 001297 793 LHVQNQKLAEEA 804 (1105)
Q Consensus 793 L~~e~~kL~~e~ 804 (1105)
|+.+.+.|.+|-
T Consensus 68 LE~kvesL~eEl 79 (86)
T 3swk_A 68 LERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777743
No 303
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.05 E-value=49 Score=27.78 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=18.5
Q ss_pred HHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001297 818 LKNLAGEVTKLSLQNAKLEKELLAARESMHSR 849 (1105)
Q Consensus 818 lk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~ 849 (1105)
...|..++..|..+|..|..++..++.++..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665555444
No 304
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.73 E-value=21 Score=43.03 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=7.9
Q ss_pred CCCCChhHHHhhhhH
Q 001297 149 GPHANSQEVYDVAAR 163 (1105)
Q Consensus 149 ~~~~tq~~Vy~~~~~ 163 (1105)
++.++-.+|++.++.
T Consensus 21 d~~tt~~ell~~V~~ 35 (575)
T 2i1j_A 21 QQTTTGKQLFDQVVK 35 (575)
T ss_dssp ETTCBHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 345555566655444
No 305
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=43.59 E-value=8 Score=42.38 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.8
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3568889999999999873
No 306
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.01 E-value=99 Score=30.00 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 831 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~ 831 (1105)
..+++.++.+...|.........+..+|..+..--..+=..|..+.+.+-.|+..|.+.
T Consensus 24 ~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 24 IENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666677777776655555555566666777777777777554
No 307
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.96 E-value=1.2e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001297 722 NKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 722 ~a~~e~~~l~~kl~~lk~~l 741 (1105)
+..-+|+.|++++..+.+..
T Consensus 34 ELIqEYl~LE~~~s~le~e~ 53 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDEN 53 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666777766664443
No 308
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.89 E-value=47 Score=30.62 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQLAC 743 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~ 743 (1105)
+...+++.+.+.+.|+..|+++++.|+-++-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888999999999998844
No 309
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.67 E-value=5.6 Score=38.82 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccc-----ceEEeCCCCcccchhhhh
Q 001297 1030 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSL 1085 (1105)
Q Consensus 1030 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~IC~~~~~-----~~vl~PCgH~~~C~~C~~ 1085 (1105)
.+.+|+.+++.++...- ..+...|.+|..... ..+-.-|.|. +|..|..
T Consensus 35 ri~kL~~~l~~~k~~~~------~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~ 88 (134)
T 1zbd_B 35 RIGRLVDRLETMRKNVA------GDGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGV 88 (134)
T ss_dssp HHHHHHHHHHHHHHTCC------SCSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEE
T ss_pred HHHHHHHHHHHHHHHhc------cCCCccccccCCCcccccCCCCCCCCCCcc-cccccCC
Confidence 34455555555543221 235678999987663 2333445555 5666643
No 310
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.65 E-value=7.7 Score=43.13 Aligned_cols=42 Identities=19% Similarity=0.581 Sum_probs=30.8
Q ss_pred cccccccccccccceEEeC----CCC-cccchhhhhc--C--CCCCCCccc
Q 001297 1055 NSHMCKVCFESPTAAILLP----CRH-FCLCKSCSLA--C--SECPICRTK 1096 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~P----CgH-~~~C~~C~~~--~--~~CPiCR~~ 1096 (1105)
....|+||-..+.-.++.. =|+ ++.|..|... + .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4458999999998877753 343 4589999532 2 569999986
No 311
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.61 E-value=8 Score=42.55 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCCeEEEEeccCCCCCcccc
Q 001297 172 GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 172 G~n~tIfaYGqTGSGKTyTm 191 (1105)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 312
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.38 E-value=1e+02 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.193 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQE 732 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~ 732 (1105)
+...++++|..+..+..+|..
T Consensus 64 ~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 64 DMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777666643
No 313
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.35 E-value=2e+02 Score=26.16 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+++.+-++|...+.+...+..+|..++...
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 314
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.23 E-value=60 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 816 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 816 ~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
..+.+|-.++..|.+.|.+|.+-|..++..+.....++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666778888888888888888887776665544
No 315
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.05 E-value=1e+02 Score=28.55 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001297 729 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQN 797 (1105)
Q Consensus 729 ~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~ 797 (1105)
.|.=+||.||.++ .+.++.+.+++....-+..+++.+++....|..+...|..++
T Consensus 27 al~YqVdlLKD~L--------------Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 27 NFMYQVDTLKDML--------------LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666 344555556665555566667777777777777776666554
No 316
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.93 E-value=3e+02 Score=32.03 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQL 741 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l 741 (1105)
..+..+|..|+..+
T Consensus 178 ~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 178 DSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 317
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.32 E-value=3.2e+02 Score=31.38 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+...+++.++.+..--+-...+..+.|+++|.. ++.+|+.|+.++
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~-------~~~~i~~l~~~i 128 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM-------NSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-------hHHHHHHHHHHH
Confidence 4455555555544422222223455666666654 445555555544
No 318
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.98 E-value=8.5 Score=42.61 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEEeccCCCCCccccC
Q 001297 177 VFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm~ 192 (1105)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999873
No 319
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.94 E-value=11 Score=41.99 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556777876 567789999999875
No 320
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=40.90 E-value=89 Score=32.16 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 685 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 685 ~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..++++.|..+.+.+++|.....-...+...+.-+|.++|..+..|+-+|..+..++
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 347888888899999998766655566888888888888888888888888888887
No 321
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=40.66 E-value=7.2 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=16.9
Q ss_pred cCCCeEEEEeccCCCCCccccC
Q 001297 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 3443348999999999998763
No 322
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.48 E-value=10 Score=44.68 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.2
Q ss_pred HHHhcCCCeEEEEeccCCCCCcccc
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
..++.|.+..++..++||||||++.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4566774456788899999999874
No 323
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.38 E-value=2.1e+02 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
|++.++.+...|..+...+..+.+.|-.
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555544
No 324
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.37 E-value=7.6 Score=41.82 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=16.6
Q ss_pred HHHhcCCCeEEEEeccCCCCCccccC
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
..++.|.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 344555444 338999999999864
No 325
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=40.33 E-value=1.1e+02 Score=27.87 Aligned_cols=26 Identities=8% Similarity=0.288 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIEN 675 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s 675 (1105)
.++.|..++...+.++....||+...
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA 31 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDA 31 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888544
No 326
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=39.96 E-value=11 Score=45.98 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45555543333 4567999999999974
No 327
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=39.86 E-value=1.3e+02 Score=24.91 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 760 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 760 e~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+.+-|++..+..-..-|..|-+-+..|.+|.+.|+.+.++|-.
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 4455677666666666777777777777766666665555544
No 328
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.64 E-value=14 Score=43.93 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|-+-.+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 455667666677899999999999874
No 329
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.63 E-value=2e+02 Score=26.40 Aligned_cols=92 Identities=23% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh-----
Q 001297 716 LQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN----- 790 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~----- 790 (1105)
++.++++...++..++.++..+..++ ..+..+..+++....|...|-+..
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~-------------------------~~l~~~~~e~~~~~~eL~~l~~d~~vy~~ 58 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQK-------------------------QKVQLELTEAKKALDEIESLPDDAVVYKT 58 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHTSCTTCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHcCCCCcHhHHH
Q ss_pred -------hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 791 -------SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 853 (1105)
Q Consensus 791 -------~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~qi 853 (1105)
.....=...|.. ++..++.....|...+...+.....|+.++
T Consensus 59 iG~vfv~~~~~ea~~~L~~---------------------~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 59 VGTLIVKTTKDKAVAELKE---------------------KIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp ETTEEEEECHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 330
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.26 E-value=12 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ +++.++||||||...
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3445678876 678889999999875
No 331
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.96 E-value=6.4 Score=34.63 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=24.2
Q ss_pred cccccccccccccceEEeCC----CCcccchhhhh
Q 001297 1055 NSHMCKVCFESPTAAILLPC----RHFCLCKSCSL 1085 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PC----gH~~~C~~C~~ 1085 (1105)
....|.+|.++--++-|+-| .|. ||..|..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr 47 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSR 47 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCe-eeccccH
Confidence 34589999999888888888 466 9999953
No 332
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=38.73 E-value=10 Score=43.02 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyT 190 (1105)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677875 67889999999984
No 333
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=38.71 E-value=17 Score=40.24 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.4
Q ss_pred CCeEEEEeccCCCCCccccC
Q 001297 173 VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~ 192 (1105)
....++-||+.|+|||+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578999999999998763
No 334
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.62 E-value=12 Score=38.58 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=22.8
Q ss_pred hHHHHHHHhcC-C--CeEEEEeccCCCCCccccC
Q 001297 162 ARPVVKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 162 ~~plV~~~l~G-~--n~tIfaYGqTGSGKTyTm~ 192 (1105)
+-+-+|.++.| + ...+.-+|++|+|||..+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34567777754 2 3577889999999999873
No 335
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=38.57 E-value=18 Score=44.34 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=32.7
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccCC
Q 001297 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 142 f~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~G 193 (1105)
|.|..+ .|..+|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 555554 788888877654 55666667543 35679999999999963
No 336
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.55 E-value=11 Score=45.58 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.2
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3578899999999999874
No 337
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.29 E-value=9.4 Score=48.28 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=27.5
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.||.|++.+ + ....++..+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 466666533 2 23334444445555567889999999999875
No 338
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.27 E-value=97 Score=23.58 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHH
Q 001297 786 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV 825 (1105)
Q Consensus 786 L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev 825 (1105)
|..+...|+.+|+.|-...-..|||+.-+.-++-+|-+.|
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555556777776665555554443
No 339
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.01 E-value=3.8e+02 Score=30.66 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 001297 728 KKLQEKVNLLEQQL 741 (1105)
Q Consensus 728 ~~l~~kl~~lk~~l 741 (1105)
..||++|++++..+
T Consensus 400 ~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 400 HLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 33555555555554
No 340
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=37.98 E-value=9.8 Score=42.67 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999875
No 341
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.71 E-value=13 Score=40.30 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=17.0
Q ss_pred hcCCCeEEEEeccCCCCCccccC
Q 001297 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 170 l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
-.|.-..++-||+.|+|||+...
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34443338999999999998763
No 342
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.71 E-value=16 Score=44.10 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4556778887 678899999999864
No 343
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.67 E-value=12 Score=40.95 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=17.9
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.. .++..++||||||.++
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 4577899999999875
No 344
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.61 E-value=1.2e+02 Score=27.91 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001297 608 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 608 ~~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q-~q~L~~qlrdKeeei~~L~qki~ 673 (1105)
+..+|+.|.+..+..-+.+.-..--|+.-.++.+.||++...+ .++=+..+...+..|..|.+.++
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556776776666666666665666666777888888876654 33333344444444444444443
No 345
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.57 E-value=1.2e+02 Score=25.95 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhhHHH
Q 001297 690 QTVTRLMSQCNEKAFEL 706 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el 706 (1105)
..+..|+.+|.+|..|.
T Consensus 18 ~~l~~Lr~eL~~Ke~eI 34 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEI 34 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555444443
No 346
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.51 E-value=2.4e+02 Score=25.68 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 001297 781 LEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 781 ~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.+...+.++...|..+++.+-+
T Consensus 37 ~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 37 DRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 347
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.18 E-value=8 Score=43.08 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456677876 567899999999874
No 348
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.63 E-value=90 Score=26.10 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
++..++.|..+...|..+|..|..+...|..
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555555
No 349
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=36.62 E-value=14 Score=43.17 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677877 567789999999875
No 350
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.58 E-value=4.6e+02 Score=30.54 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=6.2
Q ss_pred HHHHhhHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKE 838 (1105)
Q Consensus 824 ev~kL~~~N~qL~~E 838 (1105)
.+++|.....+|+..
T Consensus 176 ~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 176 VIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 351
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.49 E-value=98 Score=31.39 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHhhhhhhHHHHHH
Q 001297 650 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIK 709 (1105)
Q Consensus 650 Q~q~L~~qlrdKeeei~~L~qki~~s~~~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k 709 (1105)
+++.|..++.+++.+|..|... ..+..+.+..+..++..|..++.+.-++++.+
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a------~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTA------SSPDTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557777777777665431 23333445566667777777666655555543
No 352
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=36.06 E-value=2.7e+02 Score=25.85 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhHHHHHHHH---hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHH
Q 001297 701 EKAFELEIKSA---DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENE 777 (1105)
Q Consensus 701 e~~~el~~k~a---e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e 777 (1105)
+|.=-|+..+- .....++--.+++....+|..+|..++.+...+.++.. ..+..++..|.....|+.
T Consensus 2 eHi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~----------~~le~lk~eL~~~~~el~ 71 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQL----------EVLESLKQELATSQRELQ 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001297 778 KLKLEHVQLSEENSGLHVQNQKLAEE 803 (1105)
Q Consensus 778 ~lk~e~~~L~Ee~~~L~~e~~kL~~e 803 (1105)
.++.....+..++..+..++.-+..+
T Consensus 72 ~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 72 VLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=35.75 E-value=21 Score=37.80 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=19.9
Q ss_pred hHHHHHHHhcCCC-----eEEEEeccCCCCCcccc
Q 001297 162 ARPVVKAAMEGVN-----GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 162 ~~plV~~~l~G~n-----~tIfaYGqTGSGKTyTm 191 (1105)
...++..++.|+. ..|+..|+.|||||+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3334444554433 46889999999999754
No 354
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=35.54 E-value=2.6e+02 Score=25.60 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcc--cCCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001297 663 RQMRILEQRIIENGE--ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQ 740 (1105)
Q Consensus 663 eei~~L~qki~~s~~--~s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~ 740 (1105)
++|..-++-|..... .+.-......-+..+......+.++....-+.-|+...+--+|.++.+.....++.++.+++.
T Consensus 7 eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~ 86 (98)
T 4fm3_A 7 EQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKS 86 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777744433 222211333334566677788889999999999999999999999999888888888777776
Q ss_pred H
Q 001297 741 L 741 (1105)
Q Consensus 741 l 741 (1105)
+
T Consensus 87 I 87 (98)
T 4fm3_A 87 L 87 (98)
T ss_dssp H
T ss_pred H
Confidence 6
No 355
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.35 E-value=1.8e+02 Score=25.76 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+++.+...+..|..+..++..+++.... +...|.+-...|..|++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~---------------------EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLD---------------------EYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhHHHHHHHH
Confidence 3445555555555666666665555555 66667777777777766665
No 356
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=34.55 E-value=16 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445677876 567799999999874
No 357
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.52 E-value=2.7e+02 Score=25.46 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 693 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 693 ~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+|+.++.....++.....+...|+++|..-......++++...+..-|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444455555544444444444444444443
No 358
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=34.40 E-value=18 Score=42.03 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 151 ~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+..|.+++..+. ..+..| .+.++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 446776665332 333333 3488999999999998773
No 359
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.40 E-value=83 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 821 LAGEVTKLSLQNAKLEKELLAARESMHSRGA 851 (1105)
Q Consensus 821 l~~ev~kL~~~N~qL~~El~~~k~~~~~~e~ 851 (1105)
+..++..|+.+|.+|+.+++.++.++..+..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458888999999999998888888776654
No 360
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.01 E-value=9.8 Score=34.78 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=26.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC---CCCCCCcccccc
Q 001297 1055 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISD 1099 (1105)
Q Consensus 1055 ~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~---~~CPiCR~~i~~ 1099 (1105)
+...|++|. ..+.+-=++. .|..|.... .-||-|.++++.
T Consensus 31 M~~~CP~Cq----~eL~~~g~~~-hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQ----HVLDQDNGHA-RCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSC----SBEEEETTEE-EETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccccCccCC----CcceecCCEE-ECccccchhhccccCcchhhHHHH
Confidence 445899994 3343333443 699996655 349999988754
No 361
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.83 E-value=11 Score=47.46 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.6
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
+.|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 362
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.75 E-value=2.5e+02 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=10.0
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k 843 (1105)
+...|.+-.-.|..|++..+
T Consensus 55 EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 55 EYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 44445555555555544444
No 363
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.73 E-value=53 Score=24.90 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=19.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH
Q 001297 718 EQLQNKCSENKKLQEKVNLLEQQLA 742 (1105)
Q Consensus 718 eqL~~a~~e~~~l~~kl~~lk~~l~ 742 (1105)
+.|...+++...|++++..||+++.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888899999998884
No 364
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.73 E-value=17 Score=36.91 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=22.7
Q ss_pred HHHHHHHhc-CCC--eEEEEeccCCCCCccccC
Q 001297 163 RPVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 163 ~plV~~~l~-G~n--~tIfaYGqTGSGKTyTm~ 192 (1105)
-+-++.++. |+. ..+.-+|.+|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 356777775 553 478899999999998764
No 365
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.52 E-value=18 Score=37.51 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 164 plV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555644 445899999999887
No 366
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.44 E-value=1.9e+02 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=9.8
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 824 ev~kL~~~N~qL~~El~~~k 843 (1105)
+...|.+-.-.|..|++..+
T Consensus 66 EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 66 DYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544444
No 367
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.23 E-value=16 Score=42.19 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=17.3
Q ss_pred HHHhcCCCeEEEEeccCCCCCcccc
Q 001297 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 167 ~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
..++.|.+ ++..|+||+|||++.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556644 677899999999985
No 368
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.19 E-value=80 Score=32.53 Aligned_cols=29 Identities=45% Similarity=0.464 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+|+++|..++..|.+++..|+.+|+.|..
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777766655
No 369
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.19 E-value=93 Score=27.64 Aligned_cols=30 Identities=43% Similarity=0.402 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
-+|+++|..++..+.++...|+.+|+.|.+
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666655
No 370
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=33.00 E-value=4e+02 Score=31.06 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=10.8
Q ss_pred EEeccCCCCCcccc
Q 001297 178 FAYGVTSSGKTHTM 191 (1105)
Q Consensus 178 faYGqTGSGKTyTm 191 (1105)
+-+|.+|||||..|
T Consensus 64 ~i~G~NGaGKS~ll 77 (517)
T 4ad8_A 64 AFTGETGAGKSIIV 77 (517)
T ss_dssp EEEESHHHHHHHHT
T ss_pred EEEcCCCCCHHHHH
Confidence 45788888888766
No 371
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.98 E-value=4.2e+02 Score=29.93 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 001297 758 SDEYVDELRKKVQSQETENEKLKLEHVQLSEE 789 (1105)
Q Consensus 758 ~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee 789 (1105)
...++..+...+++...++.+..--...+.++
T Consensus 86 ~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~e 117 (390)
T 1deq_A 86 SNTLTKNIVELMRGDFAKANNNDNTFKQINED 117 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 34444455544444444444444433333333
No 372
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=32.96 E-value=20 Score=42.85 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 455666665567888999999999874
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.85 E-value=16 Score=37.30 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=20.0
Q ss_pred HHHHHHhc-CC--CeEEEEeccCCCCCccccC
Q 001297 164 PVVKAAME-GV--NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 164 plV~~~l~-G~--n~tIfaYGqTGSGKTyTm~ 192 (1105)
+-++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566664 33 2356678999999998864
No 374
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=32.78 E-value=12 Score=42.24 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 375
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=32.65 E-value=17 Score=44.25 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|..++. +..++..|+.|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 3444443 3456789999999999974
No 376
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.24 E-value=65 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
|...|+..+.+...++.+|.++++.++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666667777776666
No 377
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.12 E-value=17 Score=44.39 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+|..+++|.| ++..++||+|||.+..
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 3455677876 5778999999998753
No 378
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=32.06 E-value=22 Score=44.64 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=34.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCCC----eEEEEeccCCCCCcccc
Q 001297 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 141 ~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G~n----~tIfaYGqTGSGKTyTm 191 (1105)
...||.|-|-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777777666656666655555542 3455554 47999999999999765
No 379
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.97 E-value=6.2e+02 Score=28.99 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 695 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 695 L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++.+.....--+....+..+.||..|......+..|..+|..|+...
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433222333345667777777776666666666665555443
No 380
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.57 E-value=24 Score=35.79 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=19.3
Q ss_pred HHHHHHhc---CCCeEEEEeccCCCCCcccc
Q 001297 164 PVVKAAME---GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 164 plV~~~l~---G~n~tIfaYGqTGSGKTyTm 191 (1105)
.+++.+.. +-...|...|.+|||||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34444443 23357888999999999876
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.42 E-value=24 Score=38.78 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999998
No 382
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=31.39 E-value=23 Score=36.09 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=19.1
Q ss_pred HHHHHHHhc--CCCeEEEEeccCCCCCcccc
Q 001297 163 RPVVKAAME--GVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 163 ~plV~~~l~--G~n~tIfaYGqTGSGKTyTm 191 (1105)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444442 33446677899999999876
No 383
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=31.35 E-value=1.4e+02 Score=26.29 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001297 610 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 610 d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q-~q~L~~qlrdKeeei~~L~qki 672 (1105)
.+|+.|.+..+..-+.+.--.--|+.-.++.+.||++...+ .+.=+..+...+..|..|.+.|
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrql 68 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKREL 68 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34665666655555555555555666677788888886654 3333333444444444444444
No 384
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.15 E-value=19 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.6
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
++..++.|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 444445553 6788999999999876
No 385
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=31.08 E-value=2.2e+02 Score=32.92 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 001297 711 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 790 (1105)
Q Consensus 711 ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~ 790 (1105)
|+-..|.++|+++.++|..++.-|+.+..+++...-..+ +....-+++..-+..+..+..++++-..|.+.=.+|.
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k----~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~ 424 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQK----HANDALNALLKEKENIRNQLSGINQKIAEEKRKQDEL 424 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH
Q 001297 791 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 826 (1105)
Q Consensus 791 ~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~ 826 (1105)
..++.=....++ ..+.+......+.+.+++++.
T Consensus 425 ~aIKDAVkfTAd---FykkIsEkyGeKykkIAkELA 457 (602)
T 1cii_A 425 KATKDAINFTTE---FLKSVSEKYGAKAEQLAREMA 457 (602)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
No 386
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.03 E-value=14 Score=36.75 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCCccccC
Q 001297 175 GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~ 192 (1105)
-.+.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356778999999999874
No 387
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.02 E-value=56 Score=27.51 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAARESMH 847 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~ 847 (1105)
.+..|-.+|..|..+|..|..++..++..+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666888889999999988887775543
No 388
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.87 E-value=14 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999854
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=30.73 E-value=13 Score=39.56 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.7
Q ss_pred CeEEEEeccCCCCCccccC
Q 001297 174 NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~ 192 (1105)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3569999999999999986
No 390
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=30.68 E-value=1.7e+02 Score=26.56 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH--H-HhHHHHHHHHHHHHHHHHH-HHHHH
Q 001297 896 DPDDLKLELQARKQREAALEAALAEK--E-FLEDEYRKKVEESKRREEA-LENDL 946 (1105)
Q Consensus 896 ~~~~~k~e~~a~~er~~aLE~el~~k--~-~~eeEL~~k~ee~kk~~~~-L~~EL 946 (1105)
.++.....+.+..+++..+|-|++.. - .....+..|+...++.+.. |..+|
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999999888 4 3466778999999999999 98888
No 391
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.66 E-value=2.5e+02 Score=23.89 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.|..|..+|.++..||..|..=+..++.+|
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888
No 392
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.57 E-value=22 Score=36.24 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred HHHHHHHhc-CC--CeEEEEeccCCCCCcccc
Q 001297 163 RPVVKAAME-GV--NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 163 ~plV~~~l~-G~--n~tIfaYGqTGSGKTyTm 191 (1105)
-+-++.++. |+ ...+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 355667774 33 246788999999999876
No 393
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.43 E-value=1.2e+02 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
++..++.++.+...|..+|..|..+.+.|..
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655555555555544
No 394
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.03 E-value=2.9e+02 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
+.++|.+..+.+|+..|++.=+.|+.-.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~ 41 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGH 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 4566666677777766666555555443
No 395
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.79 E-value=18 Score=40.97 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4556677 44567899999999864
No 396
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.53 E-value=20 Score=45.07 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=34.4
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHH-HHhcC----CCeEEEEeccCCCCCcccc
Q 001297 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 140 ~~f~FD~VF~~~~tq~~Vy~~~~~plV~-~~l~G----~n~tIfaYGqTGSGKTyTm 191 (1105)
..+.||.|.+....-..+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578888888766666666655444432 12221 2346899999999999865
No 397
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.50 E-value=42 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=11.3
Q ss_pred CCCCCCcccccceee
Q 001297 1088 SECPICRTKISDRLF 1102 (1105)
Q Consensus 1088 ~~CPiCR~~i~~~i~ 1102 (1105)
..||+|..+-..+.+
T Consensus 154 ~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCHHHcee
Confidence 479999988766554
No 398
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.29 E-value=22 Score=43.30 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345667877 567889999999864
No 399
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.88 E-value=50 Score=35.31 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHHHH
Q 001297 823 GEVTKLSLQNAKLEK 837 (1105)
Q Consensus 823 ~ev~kL~~~N~qL~~ 837 (1105)
.++.+|..++.+|..
T Consensus 82 ~El~~LkeElerL~s 96 (251)
T 3m9b_A 82 QQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 378888888877765
No 400
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.85 E-value=1.5e+02 Score=27.08 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001297 609 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRI 672 (1105)
Q Consensus 609 ~d~~d~l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q-~q~L~~qlrdKeeei~~L~qki 672 (1105)
..+|+.|.+..+..-+.+.-..--|+.-.++.+.||++...+ .+.=+..+...+..|..|.+.|
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~l 68 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKREL 68 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666555556666677888889887654 3333334444444444444444
No 401
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=28.82 E-value=18 Score=37.13 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.1
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999876
No 402
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.77 E-value=82 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001297 897 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEE 934 (1105)
Q Consensus 897 ~~~~k~e~~a~~er~~aLE~el~~k~~~eeEL~~k~ee 934 (1105)
.+.+...+..+.+++..||.++..|+..-.+|+.++..
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888877777777655543
No 403
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.74 E-value=15 Score=42.40 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred HhcCCCeEEEEeccCCCCCcccc
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
++.|++-.|...|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 404
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=28.61 E-value=13 Score=42.09 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=14.0
Q ss_pred EEEEeccCCCCCccccC
Q 001297 176 TVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~ 192 (1105)
-++..|+||||||++|.
T Consensus 37 ~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred ceEEEcCCCCCHHHHHH
Confidence 35677999999999874
No 405
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.55 E-value=17 Score=33.59 Aligned_cols=35 Identities=29% Similarity=0.803 Sum_probs=26.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC--CCCCCCccc
Q 001297 1057 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTK 1096 (1105)
Q Consensus 1057 ~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~--~~CPiCR~~ 1096 (1105)
-.|+|| +..+.|+.-.-+|.+|.+.. ..|-+|...
T Consensus 30 GkC~iC-----Ds~Vrp~~~VrICdeCs~G~~~~rCIiCg~~ 66 (109)
T 2k0a_A 30 GKCPIC-----DSYVRPKRKVRVCENCSFGKQAKNCIICNLN 66 (109)
T ss_dssp TCCTTT-----CCCCCCCEECEEEHHHHTSSTTSBCTTTSSS
T ss_pred Cccccc-----CCccCCcceEEECCcCCCCCcCCceEEcCCC
Confidence 379999 44566777777999998765 569999843
No 406
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.47 E-value=79 Score=28.10 Aligned_cols=29 Identities=45% Similarity=0.464 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
+|+++|..++..|.+++..|+.+|+.|.+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 407
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.36 E-value=95 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=6.0
Q ss_pred HHHHHHhhhhhHHHHH
Q 001297 782 EHVQLSEENSGLHVQN 797 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~ 797 (1105)
|+..|-+.+..|..++
T Consensus 51 en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 408
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.36 E-value=21 Score=42.23 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|+-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999986
No 409
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.24 E-value=1.7e+02 Score=24.45 Aligned_cols=44 Identities=39% Similarity=0.370 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc
Q 001297 909 QREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEV 960 (1105)
Q Consensus 909 er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m~~~~~kl~ke~ 960 (1105)
++++|--.- .+|+.-.++|..++++++.....|..|+ ..|+.+.
T Consensus 17 NreAArrsR-~RK~~~~~~Le~~v~~L~~eN~~L~~ev-------~~Lr~~l 60 (63)
T 2dgc_A 17 NTEAARRSR-ARKLQRMKQLEDKVEELLSKNYHLENEV-------ARLKKLV 60 (63)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC-
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 666665544 5666778899999999999999999999 6665544
No 410
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=27.97 E-value=15 Score=42.30 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.5
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999987
No 411
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.89 E-value=22 Score=36.71 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHhcC-C--CeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G-~--n~tIfaYGqTGSGKTyTm~ 192 (1105)
++.++.| + ...+.-+|.+|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4555533 2 3467889999999998853
No 412
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.88 E-value=2e+02 Score=25.49 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001297 653 NLEREIQEKRRQMRILEQRII 673 (1105)
Q Consensus 653 ~L~~qlrdKeeei~~L~qki~ 673 (1105)
.|-.+|...+.++..|..+|.
T Consensus 26 ~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555554
No 413
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.77 E-value=4.1e+02 Score=25.39 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=34.5
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001297 704 FELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEH 783 (1105)
Q Consensus 704 ~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~ 783 (1105)
.+|+++.|+..-| .++...+.+|+.+|..|+..+ .........+. .+..-++..+...+.|+++-+.+.
T Consensus 51 sele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~------~~~e~~~~~~~-~~~e~le~~la~KkAEleKtqa~L 119 (125)
T 2pms_C 51 SKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQL------KAAEENNNVED-YFKEGLEKTIAAKKAELEKTEADL 119 (125)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------HCCCC----CH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHH------HHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444 334455666666666666666 22222111122 223345555666666666665554
Q ss_pred HH
Q 001297 784 VQ 785 (1105)
Q Consensus 784 ~~ 785 (1105)
..
T Consensus 120 d~ 121 (125)
T 2pms_C 120 KK 121 (125)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 414
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.76 E-value=17 Score=39.92 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.8
Q ss_pred HHhcCCCeEEEEeccCCCCCcccc
Q 001297 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 168 ~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.++.|++..|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999865
No 415
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.75 E-value=1.7e+02 Score=33.22 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhccCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHH----h-cccCCCcchhH
Q 001297 615 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ---IQNLEREIQEKRRQMRILEQRIIE----N-GEASMANASMV 686 (1105)
Q Consensus 615 l~eq~k~l~~e~a~~~~~lk~l~e~~~~~~~~~~~Q---~q~L~~qlrdKeeei~~L~qki~~----s-~~~s~~~~~~~ 686 (1105)
...|++...+++-.......|.+++- +.. +++...-++--++++.+-++-... . ..+.+. .+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~--e~~ 201 (373)
T 3hhm_B 131 YNTQFQEKSREYDRLYEEYTRTSQEI-------QMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEK--EIQ 201 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCS--HHH
T ss_pred HHHHHHhcccHHHHHHHHhccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChH--HHH
Confidence 34555555566655555555444332 221 234555566666777666653311 1 222222 333
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 687 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 687 e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
.+......|++.+++ ...-...|++.|......+.++++++..||-.+
T Consensus 202 ~~~~n~~~l~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 202 RIMHNYDKLKSRISE-------IIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 333333344443332 233445556666666666666666666665555
No 416
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=27.74 E-value=2.6e+02 Score=23.17 Aligned_cols=32 Identities=34% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHH
Q 001297 763 DELRKKVQSQETENEKLKLEHVQLSEENSGLH 794 (1105)
Q Consensus 763 ~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~ 794 (1105)
..|-++-....+|+..+.+++.+|..||..|.
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 33333344455677888888888888887765
No 417
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.71 E-value=96 Score=27.37 Aligned_cols=26 Identities=42% Similarity=0.422 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001297 775 ENEKLKLEHVQLSEENSGLHVQNQKL 800 (1105)
Q Consensus 775 E~e~lk~e~~~L~Ee~~~L~~e~~kL 800 (1105)
|+++|..++..+.++...|+.+|..|
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 418
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.61 E-value=31 Score=42.82 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.1
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 143 ~FD~VF~~~~tq~~Vy~~~~~plV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.||.|.+. ++.. +.++..+..+....|+-||++|+|||...-
T Consensus 178 ~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 45666653 3332 234444445666678999999999998763
No 419
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=27.55 E-value=17 Score=36.55 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999876
No 420
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.53 E-value=1.1e+02 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001297 821 LAGEVTKLSLQNAKLEKELLAARESMHSRG 850 (1105)
Q Consensus 821 l~~ev~kL~~~N~qL~~El~~~k~~~~~~e 850 (1105)
+..++..|+.+|.+|+.++..++.++..+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888889999999999888888777664
No 421
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.52 E-value=7e+02 Score=28.06 Aligned_cols=53 Identities=9% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001297 782 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 848 (1105)
Q Consensus 782 e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~ 848 (1105)
|+..|.+.+..|+.+++.+-+ ..+.|.+++....+.+..|..++..+|-++-+
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIID--------------SRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 445555555555555554433 22233334555555666666666666655533
No 422
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.48 E-value=41 Score=35.96 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001297 704 FELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 739 (1105)
Q Consensus 704 ~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~ 739 (1105)
.+++...+.|+.|.+.|.++..++..|+++|++|++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445666777778888877777777777777654
No 423
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.39 E-value=18 Score=43.69 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.0
Q ss_pred CCeEEEEeccCCCCCccccC
Q 001297 173 VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35678899999999999985
No 424
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.23 E-value=7.8e+02 Score=28.48 Aligned_cols=55 Identities=7% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG 746 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e 746 (1105)
...+..+..+|+++...|.++-.+. + ++|.....-+..+..+|.+|+..+..+++
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~q--i-~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQ--V-NRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666665553322 2 66667777778888888888888888877
No 425
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.21 E-value=6.1e+02 Score=27.24 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Q 001297 712 DNRILQEQLQNKCSE-NKKLQEKVNLLEQQL 741 (1105)
Q Consensus 712 e~~~lqeqL~~a~~e-~~~l~~kl~~lk~~l 741 (1105)
....++.+|.--..+ ...+.+.+..+++.+
T Consensus 111 ~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 111 NVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 344444444432221 233555566666666
No 426
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.21 E-value=2.4e+02 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001297 907 RKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 946 (1105)
Q Consensus 907 ~~er~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL 946 (1105)
..++++|-..- .+|.+...+|..++++++.+...|..++
T Consensus 7 ~rNr~AA~k~R-~rKk~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 7 MRNRIAASKSR-KRKLERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655543 5566777888888999999988888888
No 427
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=26.96 E-value=31 Score=42.53 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 76 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYA-LANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4664 333333333 3799999999999999999986
No 428
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.93 E-value=2.1e+02 Score=21.78 Aligned_cols=40 Identities=30% Similarity=0.270 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001297 910 REAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANM 949 (1105)
Q Consensus 910 r~~aLE~el~~k~~~eeEL~~k~ee~kk~~~~L~~EL~~m 949 (1105)
+.++||.|....+.--+-|.++--.-+--+..|+.|++|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianl 43 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4556666665554444555555444455578899999553
No 429
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=26.82 E-value=35 Score=38.06 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
...|.-.|++|+|||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999988
No 430
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.74 E-value=27 Score=43.25 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=21.0
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
+++.+.......++-||.+|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444445556678889999999999874
No 431
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=26.65 E-value=3.7e+02 Score=24.50 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHh--ccc-CCCcchhHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHH
Q 001297 658 IQEKRRQMRILEQRIIEN--GEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKV 734 (1105)
Q Consensus 658 lrdKeeei~~L~qki~~s--~~~-s~~~~~~~e~~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl 734 (1105)
++..+.+++.+..||... +|. ....+++..|=+.|+.+-.+|=...-+++ |.+.--|.|+++-..+-+++..|
T Consensus 6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~e----e~R~~yE~LQDkL~qi~eAR~AL 81 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLD----ERRLYYEGLQDKLAQIRDARGAL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888433 332 22333444444555555444433322222 44555567777777888899999
Q ss_pred HHHHHHHHhh
Q 001297 735 NLLEQQLACQ 744 (1105)
Q Consensus 735 ~~lk~~l~~~ 744 (1105)
|.|++.-.++
T Consensus 82 daLR~eH~~K 91 (98)
T 3f1i_H 82 SALREEHREK 91 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876433
No 432
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=26.57 E-value=18 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999876
No 433
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.44 E-value=25 Score=42.41 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.|..++. +..++..|..|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444454 3567789999999999974
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=26.39 E-value=27 Score=39.35 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=15.3
Q ss_pred HhcCCCeEEEEeccCCCCCcccc
Q 001297 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 169 ~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+-.|.+ |.-.|+||||||.++
T Consensus 172 i~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCC--EEEEESSSSCHHHHH
T ss_pred HhcCCE--EEEECCCCCCHHHHH
Confidence 335654 444599999999987
No 435
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.29 E-value=1.2e+02 Score=27.33 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHH
Q 001297 773 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA 813 (1105)
Q Consensus 773 ~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a 813 (1105)
+...+.++.+...|..+|..|..+.+.|..|...-+.++.+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777777777777776654444444443
No 436
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.28 E-value=28 Score=43.13 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.2
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
+.|+-||++|+|||+..
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37999999999999976
No 437
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=26.22 E-value=18 Score=41.86 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=18.9
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+++|.+. +++.|+||||||...
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 3456777664 567899999999973
No 438
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.20 E-value=1e+02 Score=25.53 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 772 QETENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 772 q~~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
++..++.|+.+...|..+|..|..+...|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544
No 439
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.14 E-value=3.7e+02 Score=24.41 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 001297 808 KELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 845 (1105)
Q Consensus 808 k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~ 845 (1105)
.++......+++.+..++..|..+...+..++..++..
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666665555433
No 440
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.11 E-value=4.3e+02 Score=25.06 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 803 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 803 e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
+..+.++.+.....+++++.+++++-+..+.+.-...+..+
T Consensus 65 ~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 65 NTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888877777776666554444
No 441
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.04 E-value=3.7e+02 Score=24.37 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHH
Q 001297 715 ILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 794 (1105)
Q Consensus 715 ~lqeqL~~a~~e~~~l~~kl~~lk~~l~~~~e~~~~~~~~~~~~ee~~~el~~~l~~q~~E~e~lk~e~~~L~Ee~~~L~ 794 (1105)
.-|+-|..++++...-.+.+..|+.-| ..-++..++|...+++++-|+..|........
T Consensus 29 ~Aq~~l~~~eaQAaTCNqTV~tL~~SL---------------------~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 29 RTQDSLLQAETQANSCNLTVVTLQESL---------------------EKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777666 22333344445556666666666655444444
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.89 E-value=32 Score=42.62 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.5
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 58999999999999886
No 443
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.86 E-value=36 Score=38.51 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999998
No 444
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=25.83 E-value=26 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
|..++.+ ..++..|+.|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 4444443 456789999999999975
No 445
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.82 E-value=25 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=18.3
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccccC
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 444443 3456789999999999975
No 446
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=25.76 E-value=22 Score=44.48 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..+.-.|....++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 333334455556788999999999875
No 447
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.72 E-value=6.3e+02 Score=29.67 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHhhHHH-----HHHhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001297 602 HPIGGMTSDQMDLLVEQVKMLAGEIAFSSSN-----LKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG 676 (1105)
Q Consensus 602 ~~~~~~~~d~~d~l~eq~k~l~~e~a~~~~~-----lk~l~e~~~~~~~~~~~Q~q~L~~qlrdKeeei~~L~qki~~s~ 676 (1105)
+.....+.=++.++|+....+...+..+... + .++-.|..+.+....+++.|..+--
T Consensus 33 ~~~~~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~---------------~~~~~ld~~~r~~~~~~~~l~~~rn--- 94 (501)
T 1wle_A 33 EGYSALPLLDMESLCAYPEDAARALDLRKGELRSKDL---------------PGIISTWQELRQLREQIRSLEEEKE--- 94 (501)
T ss_dssp TTSSCCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGH---------------HHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CcCCCCCccCHHHHHhCHHHHHHHHHHcCCCcchhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhh----hhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001297 677 EASMANASMVDMQQTVTRLMSQCN----EKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 737 (1105)
Q Consensus 677 ~~s~~~~~~~e~~q~~~~L~~~l~----e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~l 737 (1105)
.++.+|.+++..-+ ...-+.+..-++.+.+.++|.+.+.+..++++++..+
T Consensus 95 ----------~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 95 ----------AVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp ----------HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.69 E-value=3.4e+02 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001297 444 KKYQREISSLKEELDQLK 461 (1105)
Q Consensus 444 ~~~~~ei~~Lk~el~~l~ 461 (1105)
.+++..+..-+.||..++
T Consensus 14 rrl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 344555555555555544
No 449
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=25.69 E-value=34 Score=42.67 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=25.6
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+..|.+|||||.+.
T Consensus 154 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFA-ISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 4665 333333333 3799999999999999999986
No 450
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=25.60 E-value=1.3e+02 Score=22.86 Aligned_cols=20 Identities=35% Similarity=0.212 Sum_probs=15.5
Q ss_pred hHHHHHHhhHHHHHHHHHHH
Q 001297 821 LAGEVTKLSLQNAKLEKELL 840 (1105)
Q Consensus 821 l~~ev~kL~~~N~qL~~El~ 840 (1105)
-+++|.-|+.+|..|+.++.
T Consensus 18 yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999987753
No 451
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.54 E-value=29 Score=44.64 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=17.8
Q ss_pred HHHHhcCCCeEEEEeccCCCCCccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyT 190 (1105)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 45567775 478899999999964
No 452
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.44 E-value=84 Score=25.56 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001297 774 TENEKLKLEHVQLSEENSGLHVQNQKLAE 802 (1105)
Q Consensus 774 ~E~e~lk~e~~~L~Ee~~~L~~e~~kL~~ 802 (1105)
.++|.|++|+..|...+..|..+++.|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544
No 453
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=25.43 E-value=21 Score=35.43 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778999999999865
No 454
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.43 E-value=16 Score=38.47 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.5
Q ss_pred CeEEEEeccCCCCCccccCC
Q 001297 174 NGTVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm~G 193 (1105)
...++-||.+|+|||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35778899999999998764
No 455
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.37 E-value=21 Score=35.34 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.5
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 456
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.36 E-value=1e+02 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001297 713 NRILQEQLQNKCSENKKLQEKVNLLEQ 739 (1105)
Q Consensus 713 ~~~lqeqL~~a~~e~~~l~~kl~~lk~ 739 (1105)
.+.|......+++++-.|+.++..|+.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777888888888888887764
No 457
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=25.34 E-value=21 Score=34.86 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.1
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|+..|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35888999999999853
No 458
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.31 E-value=3.3e+02 Score=24.15 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 001297 777 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 843 (1105)
Q Consensus 777 e~lk~e~~~L~Ee~~~L~~e~~kL~~e~~~~k~la~a~~~qlk~l~~ev~kL~~~N~qL~~El~~~k 843 (1105)
|+-......-.+||.+|..+.+.+.+ +|..|..+|.+|.+=+...+
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~e---------------------Ei~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDS---------------------EIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666666666666 66666666666655444433
No 459
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.29 E-value=1.2e+02 Score=21.52 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=19.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 716 LQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 716 lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
|.+.|.....-..+||+.+|+|++-+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677778999999998765
No 460
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.10 E-value=1e+02 Score=34.29 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 689 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 689 ~q~~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
++.+++|+.++.+....+-...+....|+.+|......+.+|+.+|..++..+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555543222222234566677777666666666666666555554
No 461
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.09 E-value=29 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.637 Sum_probs=24.0
Q ss_pred ccccccccccceE---EeCCCCcccchhhh----hcCCCCCCC
Q 001297 1058 MCKVCFESPTAAI---LLPCRHFCLCKSCS----LACSECPIC 1093 (1105)
Q Consensus 1058 ~C~IC~~~~~~~v---l~PCgH~~~C~~C~----~~~~~CPiC 1093 (1105)
.|..|.....+.. ---|++. ||.+|. ..+..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 5888877664432 2346666 999994 345779999
No 462
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.95 E-value=14 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred EEEEeccCCCCCccccCC
Q 001297 176 TVFAYGVTSSGKTHTMHG 193 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~G 193 (1105)
.++-||..|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999998753
No 463
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=24.93 E-value=35 Score=42.63 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=25.6
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 122 Hifa-iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFA-IADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 4665 333333333 3699999999999999999886
No 464
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.92 E-value=20 Score=35.42 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.8
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4788999999999864
No 465
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.86 E-value=19 Score=36.32 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.0
Q ss_pred EEEeccCCCCCcccc
Q 001297 177 VFAYGVTSSGKTHTM 191 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm 191 (1105)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999987
No 466
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.82 E-value=22 Score=41.40 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=16.7
Q ss_pred HHhcCCCeEEEEeccCCCCCccccC
Q 001297 168 AAMEGVNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 168 ~~l~G~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++.|.+ ++..|+||||||.+..
T Consensus 124 ~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 124 EGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHhcCC--cEEEeCCCCCHHHHHH
Confidence 3444543 5778999999999864
No 467
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=24.61 E-value=21 Score=38.59 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.9
Q ss_pred CCeEEEEeccCCCCCcccc
Q 001297 173 VNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm 191 (1105)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999876
No 468
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.60 E-value=22 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.6
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999865
No 469
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=24.31 E-value=36 Score=43.85 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=26.2
Q ss_pred hHHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 155 QEVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 155 ~~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
-.||. ++......+ -.+.|-||+..|.+|||||.+.
T Consensus 153 PHifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 153 PHIFA-ISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp CCHHH-HHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred ccHHH-HHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 34665 333333333 3799999999999999999885
No 470
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=24.25 E-value=19 Score=36.00 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.7
Q ss_pred EEEeccCCCCCcccc
Q 001297 177 VFAYGVTSSGKTHTM 191 (1105)
Q Consensus 177 IfaYGqTGSGKTyTm 191 (1105)
|.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 471
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.03 E-value=5.3e+02 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001297 710 SADNRILQEQLQNKCSENKKLQEKVNLL 737 (1105)
Q Consensus 710 ~ae~~~lqeqL~~a~~e~~~l~~kl~~l 737 (1105)
..+...|+++|..-.....+++++...+
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333
No 472
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.01 E-value=31 Score=43.01 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445677876 567789999999875
No 473
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.96 E-value=23 Score=39.04 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCCcccc
Q 001297 175 GTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm 191 (1105)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999998
No 474
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.94 E-value=30 Score=44.18 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 166 V~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 345577877 566789999999875
No 475
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=23.80 E-value=20 Score=36.47 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|++|||||..|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999987
No 476
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.77 E-value=56 Score=26.74 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001297 815 AVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 848 (1105)
Q Consensus 815 ~~qlk~l~~ev~kL~~~N~qL~~El~~~k~~~~~ 848 (1105)
+.-+.+|-.+|..|+.+|..|..++..++....+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 477
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.56 E-value=1.9e+02 Score=31.58 Aligned_cols=29 Identities=17% Similarity=-0.040 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 713 NRILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 713 ~~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
...++.+|..+..++..++.++++.+.-.
T Consensus 78 l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 106 (341)
T 3fpp_A 78 LMELRAQRQQAEAELKLARVTYSRQQRLA 106 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666677777666655
No 478
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=23.50 E-value=38 Score=43.51 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 128 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYA-VTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHH-HhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4665 333333333 3799999999999999999986
No 479
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.42 E-value=39 Score=32.29 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=0.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001297 692 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQ 740 (1105)
Q Consensus 692 ~~~L~~~l~e~~~el~~k~ae~~~lqeqL~~a~~e~~~l~~kl~~lk~~ 740 (1105)
+..|..+|.|.--.|++...+...|+++..+++-....+..+++.++++
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq 52 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ 52 (130)
T ss_dssp -----------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445556666555555555566666666666555555555555554443
No 480
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=23.38 E-value=15 Score=30.87 Aligned_cols=38 Identities=13% Similarity=0.408 Sum_probs=31.0
Q ss_pred hhhcCCCCCcccccccccccccceEEeCCCCcccchhhhhcC
Q 001297 1046 QKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC 1087 (1105)
Q Consensus 1046 ~~~~~~~~~~~~~C~IC~~~~~~~vl~PCgH~~~C~~C~~~~ 1087 (1105)
|.|....+..++.|-+| ...+.+.-.++..|..|...+
T Consensus 13 H~F~~~~~~~pt~C~~C----~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 13 HRFKVYNYKSPTFCEHC----GTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp CCEEECCCCSCCBCSSS----CCBCCCSSSCSEEESSSCCEE
T ss_pred CccEeEcCCCCcCchhc----ChhheecCCcccccCCCCCcc
Confidence 66777788889999999 777776778898999997654
No 481
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=23.32 E-value=40 Score=42.25 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 138 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFA-VAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhH-HHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 4664 333333333 3699999999999999999875
No 482
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=23.13 E-value=37 Score=42.80 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=25.5
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 151 Hifa-iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 151 HLFS-VADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp CHHH-HHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 4664 333333333 3799999999999999999986
No 483
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.01 E-value=22 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.0
Q ss_pred eEEEEeccCCCCCccccC
Q 001297 175 GTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 175 ~tIfaYGqTGSGKTyTm~ 192 (1105)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 466678999999999984
No 484
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.01 E-value=1.6e+02 Score=22.82 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=8.9
Q ss_pred HHHHhhHHHHHHHH
Q 001297 824 EVTKLSLQNAKLEK 837 (1105)
Q Consensus 824 ev~kL~~~N~qL~~ 837 (1105)
+|.-|+.+|..|+.
T Consensus 25 rvstLq~EN~mLRq 38 (42)
T 2oqq_A 25 RLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 66666666666654
No 485
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=22.99 E-value=41 Score=42.04 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHhhhhHHHHHHH-hcCCCeEEEEeccCCCCCcccc
Q 001297 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 153 Hifa-iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 153 HIFS-ISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhhH-HHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 4665 333333333 3799999999999999999986
No 486
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=22.84 E-value=24 Score=35.47 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999876
No 487
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.82 E-value=1.7e+02 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..++.+|..+..++..+++++++.+.-.
T Consensus 80 ~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 80 ASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665444
No 488
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=22.82 E-value=48 Score=36.14 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=23.3
Q ss_pred hHHHhhhhHHHHHHHh--cCCCeEEEEeccCCCCCcccc
Q 001297 155 QEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 155 ~~Vy~~~~~plV~~~l--~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.++++.++..+..... .+-...|.-.|.+|||||+..
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555554444322 234456777899999999876
No 489
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.77 E-value=59 Score=35.57 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.2
Q ss_pred EEEEeccCCCCCccccC
Q 001297 176 TVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm~ 192 (1105)
.|...|.+|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999874
No 490
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.76 E-value=25 Score=42.91 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.5
Q ss_pred CCeEEEEeccCCCCCccccC
Q 001297 173 VNGTVFAYGVTSSGKTHTMH 192 (1105)
Q Consensus 173 ~n~tIfaYGqTGSGKTyTm~ 192 (1105)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788999999999999985
No 491
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.76 E-value=20 Score=42.48 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHhcCCCeEEEEeccCCCCCcccc
Q 001297 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 165 lV~~~l~G~n~tIfaYGqTGSGKTyTm 191 (1105)
+|..+++|.+ ++..++||+|||.+.
T Consensus 33 ~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 4456778876 456689999999865
No 492
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=22.72 E-value=45 Score=37.70 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.1
Q ss_pred cCCCeEEEEeccCCCCCcccc
Q 001297 171 EGVNGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 171 ~G~n~tIfaYGqTGSGKTyTm 191 (1105)
.|.-..|+-+|..|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576677899999999999876
No 493
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.62 E-value=4.1e+02 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.045 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001297 714 RILQEQLQNKCSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 714 ~~lqeqL~~a~~e~~~l~~kl~~lk~~l 741 (1105)
..++++|.....++..|...+..-+.+|
T Consensus 81 ~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 81 TEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776666666
No 494
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=22.49 E-value=3e+02 Score=27.65 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH-hHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Q 001297 690 QTVTRLMSQCNEKAFELEIKSA-DNRILQEQLQNK-CSENKKLQEKVNLLEQQL 741 (1105)
Q Consensus 690 q~~~~L~~~l~e~~~el~~k~a-e~~~lqeqL~~a-~~e~~~l~~kl~~lk~~l 741 (1105)
+.+..|+..|.=+.-+|+.+.. ....|+.+|.-- +.-...+...++.+|.++
T Consensus 111 ~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 111 EEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444322 333444443321 222233455555555555
No 495
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.46 E-value=3.8e+02 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.215 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001297 817 ELKNLAGEVTKLSLQNAKLEKELLAARESM 846 (1105)
Q Consensus 817 qlk~l~~ev~kL~~~N~qL~~El~~~k~~~ 846 (1105)
|+++|-++|..|..++..|..++..+++.+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555433
No 496
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.44 E-value=30 Score=39.85 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=14.0
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999885
No 497
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.21 E-value=24 Score=35.09 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.6
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|+.|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999976
No 498
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.20 E-value=24 Score=36.47 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=0.0
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.+.-+|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
No 499
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=22.15 E-value=28 Score=36.05 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred EEEEeccCCCCCcccc
Q 001297 176 TVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 176 tIfaYGqTGSGKTyTm 191 (1105)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
No 500
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.11 E-value=24 Score=34.81 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=0.0
Q ss_pred CeEEEEeccCCCCCcccc
Q 001297 174 NGTVFAYGVTSSGKTHTM 191 (1105)
Q Consensus 174 n~tIfaYGqTGSGKTyTm 191 (1105)
.+...-+|++|||||..+
T Consensus 26 ~g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SSEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Done!