BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001298
(1105 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1206
Score = 1481 bits (3833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/1132 (66%), Positives = 882/1132 (77%), Gaps = 53/1132 (4%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFT+ YT +SLDTLA GLRYELLQRP+LRMWNI+NST+EIT AQVK
Sbjct: 87 MLAILIGLLTILTWHFTKSYTKRSLDTLASGLRYELLQRPILRMWNILNSTSEITTAQVK 146
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIKRY+ ATQAEQ++LYEVM+DVTWAMFASRKALNAITI Y+NGFVQAFHRDHRS
Sbjct: 147 LSEYVIKRYSNSATQAEQVELYEVMKDVTWAMFASRKALNAITITYRNGFVQAFHRDHRS 206
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYS+L NYSI + P D+N++SSR+GWNDQSI GN+SAIWYREPLDP TG KIGK
Sbjct: 207 NNTFYIYSNLVNYSISAAEPSDANMLSSRQGWNDQSIHGNLSAIWYREPLDPTTGNKIGK 266
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
AS I PDDLINIAG SQVPDG ASWHVAVSK+T+SPLLSAALPVWD SNKSIVAVVGV
Sbjct: 267 ASEIQPDDLINIAGFSQVPDGAASWHVAVSKYTDSPLLSAALPVWD--ASNKSIVAVVGV 324
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLL NSS GP L+ AVDS++ +
Sbjct: 325 TTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLRNSSRGPKLMMAVDSEDDI 384
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+MGAQWL+S YG+K P H +H +NA+LG++QYY+D+FFLNLKRLPIVGVIIIPR YIM
Sbjct: 385 IRMGAQWLESRYGNKFP--HAVHEENAELGNQQYYIDSFFLNLKRLPIVGVIIIPRRYIM 442
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTL+ILISASVCILVIGC+CILILTNGVSKEMKLRAELISHLDARR+AEASN
Sbjct: 443 GKVDERAFKTLVILISASVCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASN 502
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD LTNEQY+TV QI+K S ALLRLLN IL
Sbjct: 503 NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNIL 562
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD +P+ VRGD RV
Sbjct: 563 DLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEMPKLVRGDSARV 622
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT+SGHI++RGWCEN+ TS +TA+ P ++KK A +TKL+QQ N+
Sbjct: 623 VQIFANLISNSIKFTTSGHIVLRGWCENISTSNDTAKSPLEQKKLRCALKTKLRQQGNHM 682
Query: 601 MNF-REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++NK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 683 KKASKKENKVILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 742
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADFP--NTVVVLATVGSMERMII 716
NKMGGEIKVVKKN PGTLM+LYLLL + ++Q DF N VV+LA GS+ R I+
Sbjct: 743 NKMGGEIKVVKKNGPGTLMRLYLLLRTPRDGTEQHCQIDFARHNVVVLLALYGSIGRGIM 802
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLRK +STL SEW+ LTQ+LREL + GF+A S EPL++E+ NI+ +
Sbjct: 803 SQWLRKNGLSTLRVSEWNELTQVLRELF--YVRRHNKGFEAQCSLNEPLRSEVLNIQDIR 860
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
DP++V+V+DI LLDLS+D+W+EQLN LD F KA FAW++NH T++ IK EL R+G ++
Sbjct: 861 DPIFVIVVDIGLLDLSTDIWKEQLNFLDKFSSKATFAWMLNHDTSTAIKMELRRKGHILM 920
Query: 837 VTKPLYKGKMIQLLETAVR---GKILGM---------------------------QNRIS 866
V KPLYK KMIQ+LET ++ K G + ++
Sbjct: 921 VNKPLYKAKMIQILETVIKEQQKKSFGAVRSSSKDDDMHDCLEIDSTQFDNASSEDSDMA 980
Query: 867 STTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIG 926
T N N + S++Q F+KC E + + +R +
Sbjct: 981 ETGNSNNVSSFHHGSRITNPSQYQTFKKCLVELTDM-------HSRSESSKRSEQRLE-S 1032
Query: 927 SSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAV 986
S + Q S N S +++ LEGLRILLAEDTP++Q VA +LEK+GATV V DGLQAV
Sbjct: 1033 SCLKGQTSSCLNKSVKEQKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAV 1092
Query: 987 EALNRMLAAESSRRRSLLQG----SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
+ALN L+ SRR S+ Q S +E D P +DLILMDCQMPKMDGYEAT IRKSE
Sbjct: 1093 DALNCRLSGRESRRESVFQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRKSE 1152
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+ G +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1153 AGSGL-HIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTK 1203
>gi|297734988|emb|CBI17350.3| unnamed protein product [Vitis vinifera]
Length = 1168
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/1123 (66%), Positives = 877/1123 (78%), Gaps = 46/1123 (4%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFTR+YTTKS+++LAYGLRYELLQRP+LRMWNI+NST EIT AQVK
Sbjct: 64 MLAILIGLLTILTWHFTRIYTTKSINSLAYGLRYELLQRPILRMWNILNSTVEITTAQVK 123
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIKRY+KP TQA+Q++LYEVMRDVTWA+FASRKALNAITINY+NGFVQAFHRDHRS
Sbjct: 124 LSEYVIKRYSKPTTQAQQVELYEVMRDVTWALFASRKALNAITINYRNGFVQAFHRDHRS 183
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYI+SDL NYSI SG Y+SN +SS +GWNDQSI NISAIWY PLDP++GE+IGK
Sbjct: 184 NNTFYIFSDLVNYSI--SGSYNSNTLSSHQGWNDQSIHSNISAIWYHVPLDPVSGERIGK 241
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
IPPDD INIAG+SQVPDGVASWHVAVSK+T+SPLLSAALPVWDP SN+SIVAVVGV
Sbjct: 242 PKAIPPDDQINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDP--SNQSIVAVVGV 299
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGP L+ A+DS++ V
Sbjct: 300 TTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPKLMLAIDSEDRV 359
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I++GA+WLQ YG K PP HV+HV+NAKLGH+ YY+D+FFLNLKRLP+VGVIIIPR+YIM
Sbjct: 360 IRLGAEWLQRTYGYKFPPSHVVHVENAKLGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIM 419
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK +ERA KTLIILISAS+CILVIGC+CILILTNGVSKEMKLRAELISHLDARR+AEAS+
Sbjct: 420 GKVEERALKTLIILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASS 479
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+TV QI+K S ALLRLLN IL
Sbjct: 480 NYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNIL 539
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
D+SKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD RV
Sbjct: 540 DISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARV 599
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT+SGHII+RGWCEN + N+ +FP ++K A + K KQ N+A
Sbjct: 600 VQIFANLISNSIKFTTSGHIILRGWCENSNAYGNSGKFPLNQKASRSALKAKFKQHRNHA 659
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++NK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 660 KRACKKNNKMTLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLV 719
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADF--PNTVVVLATVGSMERMII 716
NKMGGEIKVVKKNSPGT+MQLYLLL E + Q +F + VV+LA GSM R+I+
Sbjct: 720 NKMGGEIKVVKKNSPGTIMQLYLLLNTPIEGAGQHCQLEFGEHSLVVLLALSGSMGRLIM 779
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLRK V T E SEW+ LTQIL +L S V + G EPLK E NI+
Sbjct: 780 SQWLRKNGVFTWEASEWNELTQILGQLFRARSSVPNGGLVMQCLPSEPLKTEAPNIQDTR 839
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
V+V+++DI LLD S+D+WREQLN LD +H KA FAW++NH T++ IK EL R+G ++
Sbjct: 840 ASVFVIIVDIGLLDWSTDIWREQLNFLDKYHGKARFAWILNHDTSNFIKMELRRKGHLLM 899
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRI----SSTTNEGNGEEIRGSIANYSASKHQKF 892
V KPLYK K++ +LE ++G+ L MQ RI ST EGN H+
Sbjct: 900 VNKPLYKSKVVHILEAVIKGRDLEMQGRILNGLKSTRIEGN--------------LHESL 945
Query: 893 RKCSFEFSSICPGESSSRREDLI---------------HTMFRERHQIGSSRRDQPCSSS 937
S F + + S R E I + +E+H I + ++ S S
Sbjct: 946 EIDSTHFEEVPSSDDSDRSEMGIEFTQSTSPLTEAECENCRGQEQHLISTCPKEHGNSYS 1005
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
+ N ++ LEGLRILLAEDTP++Q VA +LEK+GATV V DGLQAV+AL M AE
Sbjct: 1006 GKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEE 1065
Query: 998 SRRRSLLQGS----PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053
SR + LLQ ++ D+ +DLILMDCQMPKMDGYEAT IRKSE E + +IPIV
Sbjct: 1066 SRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSE-EGTSLHIPIV 1124
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
ALTAHAM++DE KCL VGM+AYLTKPID MVSTIL LTK M
Sbjct: 1125 ALTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRM 1167
>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1258
Score = 1468 bits (3800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1172 (63%), Positives = 895/1172 (76%), Gaps = 87/1172 (7%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFTR YT KSLDTLA GLRYE+LQRP+LRMWNI+NSTAEITAAQVK
Sbjct: 93 MLAILIGLLTILTWHFTRSYTKKSLDTLASGLRYEILQRPILRMWNILNSTAEITAAQVK 152
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVI+RY+KP QAEQ++LYEVMRD+TWA+FASRKALNAITINY+NGFVQAFHRDHRS
Sbjct: 153 LSEYVIRRYSKPTNQAEQVELYEVMRDITWALFASRKALNAITINYRNGFVQAFHRDHRS 212
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL NYSI GPYD+N+ SS + W+DQSI N SAIWYREPLDPI+GEK GK
Sbjct: 213 NNTFYIYSDLVNYSINAKGPYDTNMFSSHQAWDDQSIHSNFSAIWYREPLDPISGEKKGK 272
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
ASPIPPDDLINIAG+SQVPDGVASWHVAVSK+T+SPLL AALPVWD SNKSIVAVVGV
Sbjct: 273 ASPIPPDDLINIAGLSQVPDGVASWHVAVSKYTDSPLLQAALPVWD--ASNKSIVAVVGV 330
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TT+L SVGQLM+ELVEVHSG+IYLTSQEGYLLATSTNAPLLTNS+T PNL+ AVD++ P+
Sbjct: 331 TTSLYSVGQLMRELVEVHSGYIYLTSQEGYLLATSTNAPLLTNSTTRPNLIMAVDTEEPI 390
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+MGA+WL+ YG+K+ PG ++ V+NAKLG++QYY+D+FFLNLKRLPIVGVIIIPR YIM
Sbjct: 391 IRMGARWLEKVYGNKLTPGQIVQVENAKLGNQQYYIDSFFLNLKRLPIVGVIIIPRRYIM 450
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTL+ILISAS+CILVIGC+CILILTNGVSKEMKLRAELISHLDARR+AEASN
Sbjct: 451 GKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASN 510
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+TV QI+K S ALLRLLN IL
Sbjct: 511 NYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNIL 570
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD++P+ VRGD RV
Sbjct: 571 DLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDDMPKLVRGDSARV 630
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCEN +T N A F D+KK A + KL+QQ N+
Sbjct: 631 VQIFANLISNSIKFTTTGHIILRGWCENFNTY-NDARFHLDQKKMRCAPKPKLRQQGNHT 689
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++DNK L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 690 KKAWKKDNKTILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 749
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY-DADFP--NTVVVLATVGSMERMII 716
NKMGGEIKVVKKN GTLM+LYLLL A+++ + DF N VV+LA GSM R+I+
Sbjct: 750 NKMGGEIKVVKKNGSGTLMRLYLLLNAAADGADLQCQVDFSSQNIVVLLALYGSMGRVIM 809
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWL K ++TL S+W+ LTQ+LR+L NGFD S EPLK+E+ NI+ +
Sbjct: 810 SQWLHKIGLATLGVSDWNELTQVLRKLFHVRR--RENGFDVNCSLNEPLKSEVRNIEDMK 867
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
DP++++V+DI LLDLS+D+W+EQ+N +D F KA FAW++NH T++ IK EL ++G ++
Sbjct: 868 DPIFIIVVDIGLLDLSTDIWKEQINFVDKFSGKAKFAWMLNHDTSNAIKMELRKKGHLLM 927
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGE-------EIRGSIANYSASKH 889
V KPLYK KMI +LET ++ K L Q + S+ T + EI + + ++S+
Sbjct: 928 VNKPLYKAKMIHILETVIKEKDLENQKKSSNATRATTKDIDMHECLEIDSTHFDTASSEE 987
Query: 890 ---------------------------------QKFRKCSFEFSSI-------------- 902
Q F+KC E + +
Sbjct: 988 SDTAEMGKSNSPSIFHLREKQKETEKIATESQCQSFKKCLVELADVDAEAREDPCQIRPN 1047
Query: 903 ----------------CPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRI 946
P ++++ E H ER SS ++Q S S+ + NQ++
Sbjct: 1048 LPSTQYGKDMLVCNKQAPFSTATQNESSKH---EERISESSSHKEQGNSYSSKAGNQQKA 1104
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL--- 1003
L+GLRILLAEDTP++Q VA +LEK+GA V V DGLQAVEALN +L+ + +R S
Sbjct: 1105 LDGLRILLAEDTPVLQRVATIMLEKMGAKVIAVGDGLQAVEALNCVLSEKDLKRESPGDD 1164
Query: 1004 -LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
+G ++ ++P +DLILMDCQMPKMDGYEAT IRKSE+ G +IPIVALTAHAM++
Sbjct: 1165 GERGLQTDIQESPPYDLILMDCQMPKMDGYEATKAIRKSEAGTGF-HIPIVALTAHAMSS 1223
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1224 DEAKCLEVGMDAYLTKPIDYKLMVSTILSLTK 1255
>gi|225431092|ref|XP_002265248.1| PREDICTED: histidine kinase 1-like [Vitis vinifera]
Length = 1235
Score = 1465 bits (3793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1176 (64%), Positives = 890/1176 (75%), Gaps = 85/1176 (7%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFTR+YTTKS+++LAYGLRYELLQRP+LRMWNI+NST EIT AQVK
Sbjct: 64 MLAILIGLLTILTWHFTRIYTTKSINSLAYGLRYELLQRPILRMWNILNSTVEITTAQVK 123
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIKRY+KP TQA+Q++LYEVMRDVTWA+FASRKALNAITINY+NGFVQAFHRDHRS
Sbjct: 124 LSEYVIKRYSKPTTQAQQVELYEVMRDVTWALFASRKALNAITINYRNGFVQAFHRDHRS 183
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYI+SDL NYSI SG Y+SN +SS +GWNDQSI NISAIWY PLDP++GE+IGK
Sbjct: 184 NNTFYIFSDLVNYSI--SGSYNSNTLSSHQGWNDQSIHSNISAIWYHVPLDPVSGERIGK 241
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
IPPDD INIAG+SQVPDGVASWHVAVSK+T+SPLLSAALPVWDP SN+SIVAVVGV
Sbjct: 242 PKAIPPDDQINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDP--SNQSIVAVVGV 299
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGP L+ A+DS++ V
Sbjct: 300 TTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPKLMLAIDSEDRV 359
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I++GA+WLQ YG K PP HV+HV+NAKLGH+ YY+D+FFLNLKRLP+VGVIIIPR+YIM
Sbjct: 360 IRLGAEWLQRTYGYKFPPSHVVHVENAKLGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIM 419
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK +ERA KTLIILISAS+CILVIGC+CILILTNGVSKEMKLRAELISHLDARR+AEAS+
Sbjct: 420 GKVEERALKTLIILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASS 479
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+TV QI+K S ALLRLLN IL
Sbjct: 480 NYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNIL 539
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
D+SKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD RV
Sbjct: 540 DISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARV 599
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT+SGHII+RGWCEN + N+ +FP ++K A + K KQ N+A
Sbjct: 600 VQIFANLISNSIKFTTSGHIILRGWCENSNAYGNSGKFPLNQKASRSALKAKFKQHRNHA 659
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++NK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 660 KRACKKNNKMTLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLV 719
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADF--PNTVVVLATVGSMERMII 716
NKMGGEIKVVKKNSPGT+MQLYLLL E + Q +F + VV+LA GSM R+I+
Sbjct: 720 NKMGGEIKVVKKNSPGTIMQLYLLLNTPIEGAGQHCQLEFGEHSLVVLLALSGSMGRLIM 779
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLRK V T E SEW+ LTQIL +L S V + G EPLK E NI+
Sbjct: 780 SQWLRKNGVFTWEASEWNELTQILGQLFRARSSVPNGGLVMQCLPSEPLKTEAPNIQDTR 839
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
V+V+++DI LLD S+D+WREQLN LD +H KA FAW++NH T++ IK EL R+G ++
Sbjct: 840 ASVFVIIVDIGLLDWSTDIWREQLNFLDKYHGKARFAWILNHDTSNFIKMELRRKGHLLM 899
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRI----SSTTNEGN-----------GEEI---- 877
V KPLYK K++ +LE ++G+ L MQ RI ST EGN EE+
Sbjct: 900 VNKPLYKSKVVHILEAVIKGRDLEMQGRILNGLKSTRIEGNLHESLEIDSTHFEEVPSSD 959
Query: 878 ---------RGSIANYSASKHQKFR-------------KCSFEFSSICPGESSSRREDLI 915
SI Y ++ QK R C EF+ + E++ R ED
Sbjct: 960 DSDRSEMGSHKSINAYHIAEKQKDRIRKPCPSQYQTANSCLVEFTQVYSTENNLRTEDPH 1019
Query: 916 -------------HTMF------------------RERHQIGSSRRDQPCSSSNSSSNQK 944
H + +E+H I + ++ S S + N +
Sbjct: 1020 QIRPNSHDAGNEGHKLMCNKSTSPLTEAECENCRGQEQHLISTCPKEHGNSYSGKTVNGQ 1079
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+ LEGLRILLAEDTP++Q VA +LEK+GATV V DGLQAV+AL M AE SR + LL
Sbjct: 1080 KSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEESRGKCLL 1139
Query: 1005 QGS----PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1060
Q ++ D+ +DLILMDCQMPKMDGYEAT IRKSE E + +IPIVALTAHAM
Sbjct: 1140 QDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSE-EGTSLHIPIVALTAHAM 1198
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
++DE KCL VGM+AYLTKPID MVSTIL LTK M
Sbjct: 1199 SSDEAKCLEVGMDAYLTKPIDYRLMVSTILSLTKRM 1234
>gi|224071327|ref|XP_002303406.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222840838|gb|EEE78385.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1149
Score = 1452 bits (3758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/1102 (66%), Positives = 871/1102 (79%), Gaps = 27/1102 (2%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFTR YT KSLDTLA GLRYELLQRP+LRMWNI+NSTAEITAAQVK
Sbjct: 64 MLAILIGLLTILTWHFTRSYTKKSLDTLASGLRYELLQRPILRMWNILNSTAEITAAQVK 123
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVI RY+K QAEQ++LYEVMR VTWA+F+SRKALNAITINY+NGFVQAFHRDHRS
Sbjct: 124 LSEYVIGRYSKTTIQAEQVELYEVMRHVTWALFSSRKALNAITINYRNGFVQAFHRDHRS 183
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL NYSI GP D+N+ S + WNDQSI N SAIWYREPLDP +GEKIGK
Sbjct: 184 NNTFYIYSDLRNYSINAKGPSDANMFLSHQAWNDQSIHSNFSAIWYREPLDPTSGEKIGK 243
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
ASPIPPDDLINIAG+SQVPDGVASWHVAVSK+T+SPLLSAALPVWD NKSIVAVVGV
Sbjct: 244 ASPIPPDDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWD--AYNKSIVAVVGV 301
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLM+ELVEVH G+IYLTSQEGYLLATSTNAPLLTNS T PNL+ AVD++ P
Sbjct: 302 TTALYSVGQLMRELVEVHKGYIYLTSQEGYLLATSTNAPLLTNS-TRPNLIMAVDTEEPT 360
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+MGA+WL+ YG+K PPGHV+HV+NAKLG +Q Y+D+FFLNLKRLPIVGVIIIPR YIM
Sbjct: 361 IRMGARWLERVYGNKFPPGHVVHVENAKLGKQQCYIDSFFLNLKRLPIVGVIIIPRRYIM 420
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTL+ILISAS+CILVIGC+ ILILTNGVSKEMKLRAELISHLDARR+AEASN
Sbjct: 421 GKVDERAFKTLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEASN 480
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+ V QI+K S ALLRLLN IL
Sbjct: 481 NYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNIL 540
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD +P+ VRGD RV
Sbjct: 541 DLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEMPKLVRGDSARV 600
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCENL+ + N +F D+KK A + KL+Q N+
Sbjct: 601 VQIFANLISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKMRCAIKPKLRQHGNHL 660
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++NK+ L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 661 KKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 720
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY-DADFP--NTVVVLATVGSMERMII 716
NKMGGEIKVVKKN PGTLM+LYLLL ++ ++ DF N VV++A GSM R+I+
Sbjct: 721 NKMGGEIKVVKKNGPGTLMRLYLLLKTPTDGADLHCQVDFSSHNAVVLVALNGSMGRVIM 780
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLR+ ++TL SEW+ LT++LR+L + NGFD S EPLK+E+ NI+ +
Sbjct: 781 SQWLREIGLTTLGVSEWNELTRVLRKLFH--ARRRENGFDVQCSMNEPLKSEVLNIEDMK 838
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
D ++++V+D+ LLDLS+D+W+EQ+N LD F KA FAW++NH T++ IK EL ++G ++
Sbjct: 839 D-LFIIVVDVGLLDLSTDIWKEQINFLDNFSGKAKFAWMLNHDTSNAIKMELRKKGHLLM 897
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCS 896
V KPLYK KMI +LET ++ K L Q + ++N G + H+ S
Sbjct: 898 VNKPLYKAKMIHILETVIKEKDLEYQKK---SSNAARAMAKDGDM-------HECLEIDS 947
Query: 897 FEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAE 956
F + ES + ++ + ER+ SS ++Q S SN + NQ++ L+GLRILLAE
Sbjct: 948 THFDTTSSEESDTAEMEI--SKHDERNSETSSHKEQGNSYSNKAGNQQKALDGLRILLAE 1005
Query: 957 DTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ----GSPSETP 1012
DTP++Q VA +LEK+GA V V DGLQAVEALN L+ + RR S G ++
Sbjct: 1006 DTPVLQRVATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRESPGNDGNTGLQTDIQ 1065
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
++ +DLILMDCQMPKMDGYEAT IRKSE+ +IPIVALTAHAM++DE KCL VGM
Sbjct: 1066 ESQSYDLILMDCQMPKMDGYEATKAIRKSETGTDL-HIPIVALTAHAMSSDEAKCLEVGM 1124
Query: 1073 NAYLTKPIDSERMVSTILRLTK 1094
+AYLTKPID + MVSTIL LT+
Sbjct: 1125 DAYLTKPIDYKLMVSTILSLTR 1146
>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1222
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1147 (62%), Positives = 859/1147 (74%), Gaps = 67/1147 (5%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFT+ YT +SLD+LAYGLR+ELLQRP+LRMW+++NST+EIT AQVK
Sbjct: 87 MLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVK 146
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYV+K+Y+KP QAEQ++LYE MRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS
Sbjct: 147 LSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 206
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL+NYSI + +D N +SS EGW++ SI GN+SA W+REPLDPI+GEKIGK
Sbjct: 207 NNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGK 266
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
A IPP+DLINIAGISQV DGVASWHV VSK+ ++PLLSAALPV D SN+SIVAVVGV
Sbjct: 267 ARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSD--ASNESIVAVVGV 324
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVE HSGHIYLTSQEGYLLATS NAPLL N+S GP L AVDS + V
Sbjct: 325 TTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDV 384
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I++GA+WLQ YG+ PPGH +H +N KLG +QYY+D+FFLNLKRLPIVGV+IIPR+YIM
Sbjct: 385 IRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIM 444
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERAYKTL+ILISAS+CILVIGC+CILILT GVSKEMKLRAELISHLDARR+AEAS+
Sbjct: 445 GKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASS 504
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD L NEQ++TV QI+K S ALLRLLN IL
Sbjct: 505 NYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNIL 564
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD GRV
Sbjct: 565 DLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRV 624
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCE +T K +F D+KK RTK+KQ +A
Sbjct: 625 VQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHA 684
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
N F++DNK+ L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 685 KNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLV 744
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGA---SSESKQIYDADFPNTVVVLATVGSMERMII 716
NKMGGEIKVVKKN PGTLM+ YL+L S++ +D N VV+LA GSM R+I
Sbjct: 745 NKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLIT 804
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLRK + TLE SEW+ LT IL+EL P S + GF S E L+AE+ IK +
Sbjct: 805 SQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMK 864
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
V+++V DI +LDLS+D+W++QL LD + KA FAW++NH T++ IK EL +G I+
Sbjct: 865 SQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIM 924
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQ--NRISSTTNEGNGEEI----RGSIANYSASKHQ 890
KPLY+ KMI +LE ++ + L +Q N + + + EG+ E S+
Sbjct: 925 NNKPLYRSKMIHILEAVMKDRNLELQRKNALRNVSKEGDYHECLEIDSTQFETASSDDSD 984
Query: 891 KFR------KCSFEF-------------SSICPGESSSRREDLIHTM---------FRER 922
F +C+ + SS P ++S +H++ + R
Sbjct: 985 VFELGNSNSQCAIQVRDGQEETTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVR 1044
Query: 923 H-----QIGSSRRDQ-------PCSSSNSSSNQ---KRILEGLRILLAEDTPLIQIVACK 967
Q SS ++ P S S SN K+ LEGLRILLAEDTP++Q V
Sbjct: 1045 QNSSMSQCQSSESNEQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTI 1104
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
+LE++GA V DGLQAVEAL ML+AE RR E P R+DLILMDCQMP
Sbjct: 1105 MLERMGAKVIAFGDGLQAVEALTAMLSAEEQRR---------EFP--TRYDLILMDCQMP 1153
Query: 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
KMDGYEAT IRK E + +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVS
Sbjct: 1154 KMDGYEATKAIRKLEV-GTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVS 1212
Query: 1088 TILRLTK 1094
TIL LT+
Sbjct: 1213 TILSLTQ 1219
>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1221
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1147 (62%), Positives = 859/1147 (74%), Gaps = 67/1147 (5%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFT+ YT +SLD+LAYGLR+ELLQRP+LRMW+++NST+EIT AQVK
Sbjct: 86 MLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVK 145
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYV+K+Y+KP QAEQ++LYE MRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS
Sbjct: 146 LSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 205
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL+NYSI + +D N +SS EGW++ SI GN+SA W+REPLDPI+GEKIGK
Sbjct: 206 NNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGK 265
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
A IPP+DLINIAGISQV DGVASWHV VSK+ ++PLLSAALPV D SN+SIVAVVGV
Sbjct: 266 ARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSD--ASNESIVAVVGV 323
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVE HSGHIYLTSQEGYLLATS NAPLL N+S GP L AVDS + V
Sbjct: 324 TTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDV 383
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I++GA+WLQ YG+ PPGH +H +N KLG +QYY+D+FFLNLKRLPIVGV+IIPR+YIM
Sbjct: 384 IRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIM 443
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERAYKTL+ILISAS+CILVIGC+CILILT GVSKEMKLRAELISHLDARR+AEAS+
Sbjct: 444 GKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASS 503
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD L NEQ++TV QI+K S ALLRLLN IL
Sbjct: 504 NYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNIL 563
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD GRV
Sbjct: 564 DLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRV 623
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCE +T K +F D+KK RTK+KQ +A
Sbjct: 624 VQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHA 683
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
N F++DNK+ L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 684 KNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLV 743
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGA---SSESKQIYDADFPNTVVVLATVGSMERMII 716
NKMGGEIKVVKKN PGTLM+ YL+L S++ +D N VV+LA GSM R+I
Sbjct: 744 NKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLIT 803
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLRK + TLE SEW+ LT IL+EL P S + GF S E L+AE+ IK +
Sbjct: 804 SQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMK 863
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
V+++V DI +LDLS+D+W++QL LD + KA FAW++NH T++ IK EL +G I+
Sbjct: 864 SQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIM 923
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQ--NRISSTTNEGNGEEI----RGSIANYSASKHQ 890
KPLY+ KMI +LE ++ + L +Q N + + + EG+ E S+
Sbjct: 924 NNKPLYRSKMIHILEAVMKDRNLELQRKNALRNVSKEGDYHECLEIDSTQFETASSDDSD 983
Query: 891 KFR------KCSFEF-------------SSICPGESSSRREDLIHTM---------FRER 922
F +C+ + SS P ++S +H++ + R
Sbjct: 984 VFELGNSNSQCAIQVRDGQEETTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVR 1043
Query: 923 H-----QIGSSRRDQ-------PCSSSNSSSNQ---KRILEGLRILLAEDTPLIQIVACK 967
Q SS ++ P S S SN K+ LEGLRILLAEDTP++Q V
Sbjct: 1044 QNSSMSQCQSSESNEQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTI 1103
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
+LE++GA V DGLQAVEAL ML+AE RR E P R+DLILMDCQMP
Sbjct: 1104 MLERMGAKVIAFGDGLQAVEALTAMLSAEEQRR---------EFP--TRYDLILMDCQMP 1152
Query: 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
KMDGYEAT IRK E + +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVS
Sbjct: 1153 KMDGYEATKAIRKLEV-GTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVS 1211
Query: 1088 TILRLTK 1094
TIL LT+
Sbjct: 1212 TILSLTQ 1218
>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1193
Score = 1387 bits (3591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1132 (62%), Positives = 859/1132 (75%), Gaps = 43/1132 (3%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT LTWHFT++YTTKSL++LAY LRYELLQRP+LRMWNI+NSTAEIT AQVK
Sbjct: 64 MLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVK 123
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS+YVI+++ ATQA+Q+++YE MR VTWA+FA +KALN+IT+ YKNGFVQAFHRD +
Sbjct: 124 LSQYVIRKHTNFATQADQVEMYEAMRAVTWALFAGKKALNSITVKYKNGFVQAFHRDLKD 183
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL+NYS+ SG + N SSRE WND+ I G+ AIWYREPLDPI+GEKIGK
Sbjct: 184 NNTFYIYSDLANYSMAASGYNEINSRSSREAWNDKDIHGHKPAIWYREPLDPISGEKIGK 243
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
PI P+D INIAG+SQVPDGVASWHVAVSKFT+SPLLSAALPVWD +SNKSI AVVGV
Sbjct: 244 VRPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWD--SSNKSIEAVVGV 301
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVE HSGH+YLTSQEGYLLATSTNAPLL+NS+ P L AV+ N V
Sbjct: 302 TTALYSVGQLMKELVEKHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVECQNEV 361
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GAQWLQ YG+ P H +HV+N +LG +QYY+D+FFLNLKRLP+VGVIIIPR++IM
Sbjct: 362 IREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIM 421
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
G+ADERA+KTL+ILISAS+CI+VIGC+CILILTNGVSKEMKLRAELISHL+ARRKAEAS+
Sbjct: 422 GQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASS 481
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD+LTNEQ +TV QI+K S ALLRLLN IL
Sbjct: 482 NYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNIL 541
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD RV
Sbjct: 542 DLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARV 601
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLINNSIKFT SGHI++RGWCEN ++ + FP ++KK + +T+ KQ N+A
Sbjct: 602 VQIFANLINNSIKFTLSGHIVLRGWCENPNSCSDNTNFPLEQKKLRCSQKTRAKQHENHA 661
Query: 601 MNF-REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
DNK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 662 KRTSNRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 721
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADFPNT--VVVLATVGSMERMII 716
NKMGGEIKVVKK GTLM+L L L A + ++Q DF N VV+LA G+M R
Sbjct: 722 NKMGGEIKVVKKEGSGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSAT 781
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
S+WL+K V T+E +EW+GLTQILR L S +NGFDA YS + LK+ + +I+ L
Sbjct: 782 SKWLQKNGVVTMEAAEWNGLTQILRVLFHARSSAHNNGFDANYSVHDNLKSRLLSIQELR 841
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
+PV+V+ +DI LLDLS+D+W+EQLN L + +A F W++NH +++ +K +L R+G +
Sbjct: 842 NPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTMKMDLCRKGHTLT 901
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNR----ISSTTNEGN---GEEIRGSIANYSASKH 889
V KPLYK KMI +LE+ ++ + +Q + + +T EGN EI + + ++S
Sbjct: 902 VNKPLYKTKMIHILESIIKDRNEELQKKNMTTLRATVKEGNLHESLEIDYTQCDVASSDG 961
Query: 890 QKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIG-------------SSRRDQPCSS 936
+ S+ +RE ++ + +HQI + R+++ C S
Sbjct: 962 SDISETG--GSNPVSARGDKQREKVVRSDPSSQHQINNLVGLTNECMEDDNHRKEELCQS 1019
Query: 937 SNSSSNQ---------KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
S +S++ K+ LEGLRILLAEDTP+IQ VA +LEK+GA V V DG QAV+
Sbjct: 1020 SLNSNDASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAVD 1079
Query: 988 ALNRMLAAESSRRRSLLQ-----GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
ALN M E RR +LL+ S +E P +DLILMDCQMPKMDGYEAT IRKSE
Sbjct: 1080 ALNGMSGVEDCRRETLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRKSE 1139
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
G +IPIVALTAHAM+ DE KCL VGM+AYLTKPID + M STIL LT+
Sbjct: 1140 EGTGL-HIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTR 1190
>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1197
Score = 1380 bits (3573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1141 (61%), Positives = 854/1141 (74%), Gaps = 57/1141 (4%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT LTWHFT++YTTKSL++LAY LRYELLQRP+LRMWNI+NSTAEIT AQVK
Sbjct: 64 MLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVK 123
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS+YVI+ + ATQA+Q+++Y+ MR VTWA+F S+KALN+IT+ YKNGFVQAFHRD +
Sbjct: 124 LSQYVIRSHTNLATQADQVEMYDAMRAVTWALFVSKKALNSITVKYKNGFVQAFHRDLKD 183
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL+NYS+ SG N SSRE WND+ I G+ +A+WYREPLDP++GEKIGK
Sbjct: 184 NNTFYIYSDLANYSMAASGYNAINSHSSREAWNDKDIHGHKAAVWYREPLDPVSGEKIGK 243
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
PI P+D INIAG+SQVPDGVASWHVAVSKFT+SPLLSAALPVWD +SNKSIVAVVGV
Sbjct: 244 VMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWD--SSNKSIVAVVGV 301
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELVE HSGH+YLTSQEGYLLATSTNAPLL+N++ P L AVD +N V
Sbjct: 302 TTALYSVGQLMKELVEKHSGHMYLTSQEGYLLATSTNAPLLSNTTKPPKLKMAVDCENEV 361
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GAQWLQ YG+ P H +HV+N +LG +QYY+D+FFLNLKRLP+VGVIIIPR++IM
Sbjct: 362 IREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIM 421
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
G+ADERA+KTL+ILISAS+CI+VIGC+CILILTNGVSKEMKLRAELISHL+ARRKAEAS+
Sbjct: 422 GQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASS 481
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD+LTNEQ +TV QI+K S ALLRLLN IL
Sbjct: 482 NYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNIL 541
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P+ VRGD RV
Sbjct: 542 DLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARV 601
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLINNSIKFT SGHII+RGWCEN ++ + FP ++KK + +T+ KQ N+A
Sbjct: 602 VQIFANLINNSIKFTLSGHIILRGWCENPNSCSDNTNFPLEKKKSRCSQKTRAKQHENHA 661
Query: 601 MNF-REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
DNK+ L FEVDDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 662 KRTSNRDNKIILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 721
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADFPNT--VVVLATVGSMERMII 716
NKMGGEIKVVKK PGTLM+L L L A + ++Q DF N VV+LA G+M R
Sbjct: 722 NKMGGEIKVVKKEGPGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSAT 781
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
S+WL+K V T+E +EW+GLTQILR L S +NGFDA YS + LK+ + +I+ L
Sbjct: 782 SKWLQKNGVVTMEAAEWNGLTQILRVLFHARSSSHNNGFDANYSVHDNLKSRLLSIQELR 841
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
+PV+ + +DI LLDLS+D+W+EQ+N L ++ +A F W++NH +++ IK EL R+G +
Sbjct: 842 NPVFAIAVDIGLLDLSTDIWKEQINFLHKYYGRAKFVWMLNHDSSNSIKMELRRKGHTLT 901
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNR----ISSTTNEGN------------------- 873
V KPLYK KMI +LE ++ + +Q + +T EG+
Sbjct: 902 VNKPLYKTKMIHILEAIIKERNEELQKKNMTTPRATVKEGDLHESLEIDYTQCDVASSDG 961
Query: 874 ---------------GEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTM 918
G++ R +A S + + +++ R+E+L +
Sbjct: 962 SDISEKGGSNPVSACGDKQREKVARSDPSSQHQINN----LVGLTMEDNNHRKEELCQST 1017
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
E + G +RR SSS+ + K+ LEGLRILLAEDTP+IQ VA +LEK+GA V
Sbjct: 1018 QDEDSEYGETRR---ASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVA 1074
Query: 979 VPDGLQAVEALNRMLAAESSRRRSLLQ-----GSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V DG QAV+ALN M E R SLL+ S +E P +DLILMDCQMPKMDGYE
Sbjct: 1075 VGDGQQAVDALNGMPGVEDCIRESLLKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYE 1134
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
AT IRKSE +IPIVALTAHAM+ DE KCL VGM+AYLTKPID + M STIL LT
Sbjct: 1135 ATKAIRKSEVGTDL-HIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLT 1193
Query: 1094 K 1094
+
Sbjct: 1194 R 1194
>gi|357483831|ref|XP_003612202.1| Histidine kinase osmosensor protein [Medicago truncatula]
gi|355513537|gb|AES95160.1| Histidine kinase osmosensor protein [Medicago truncatula]
Length = 1218
Score = 1361 bits (3522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1148 (61%), Positives = 861/1148 (75%), Gaps = 74/1148 (6%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFT++YT KSL +LAYGLRYELLQRP+LRMWNI+NST+EIT AQVK
Sbjct: 88 MLAILIGLLTILTWHFTKIYTKKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVK 147
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS+YVI+RY+ PA+QAEQ++LYE MR VTW++FASRKALN+ITINYKNGFVQAFHRD +
Sbjct: 148 LSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKD 207
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDLSNYS+ + IS+ + W+D+++ GN SAIWYREPLDP+TGEKIGK
Sbjct: 208 NNTFYIYSDLSNYSMVATTSNMLKSISTHQAWDDKTLHGNFSAIWYREPLDPVTGEKIGK 267
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
A I P+DLINIAG+SQVPDGVA+WHVAVSKFT+SPLLSAALPVWD +SNKSI+AVVGV
Sbjct: 268 AMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWD--SSNKSIMAVVGV 325
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVK-AVDSDNP 299
TTA SVGQLM+ELVE+HSGH+YLTSQ+GYLLATST+APLLTNS+ P +K AVD ++
Sbjct: 326 TTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDE 385
Query: 300 VIQMGAQWLQSEYGSKVPPG-HVIHVQNAKLGHKQYYMDTFFLNLKRLPIV--------- 349
+I++GA+WLQ YG+ P H +HV+NAKLG++QYY+D+F+LNLKRLP+V
Sbjct: 386 IIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGNQQYYIDSFYLNLKRLPLVIIIKRLVLL 445
Query: 350 ---------GVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEM 400
GVIIIPR+YIMG+ DER++KTL+ILISAS+CI VIGC+CILILTNGVSKEM
Sbjct: 446 TYSLVITKVGVIIIPRKYIMGQVDERSFKTLVILISASLCIFVIGCVCILILTNGVSKEM 505
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
LRAELIS L+ARRKAEAS+NYKSQFLANMSHELRTPMAA+IGLL+IL SDD LTNEQYS
Sbjct: 506 NLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYS 565
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
TV QI+K S ALLRLLN ILDLSKVESGK+ LE+ EFDL +ELE LVDMFSVQC NHNVE
Sbjct: 566 TVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVE 625
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
TVLDLSD++P+ VRGD GRV Q+F+NLINNSIKFT+SGH+I+RGWCE ++ ++ F
Sbjct: 626 TVLDLSDDMPKLVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCNDSPNFYL 685
Query: 581 DRKKFGRAFRTKLKQQANNAMNFR-EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
D+KK ++K K A++A DNK+ L FEV+DTGCGID SKW++VFESFEQ DP
Sbjct: 686 DQKKSRNLHKSKEKPNASHAKRISMRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADP 745
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
STTR HGGTGLGL IVR LVNKMGGEIKV KK GTLM+L LLL A + + + +
Sbjct: 746 STTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPVDVTEQHALNLT 805
Query: 700 NT--VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPV-SSNGFD 756
+ VV+LA G+M R+I S+WL KK V T+E SEW+GLTQILREL S + +SN FD
Sbjct: 806 DNGLVVLLALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHNSNNFD 865
Query: 757 APYS-SREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWV 815
A Y + E K+++ +IK + +P++V+V+DI LLDLS+D+W+EQLN L + +A F W+
Sbjct: 866 AHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWM 925
Query: 816 VNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGE 875
+NH T++ IKTEL R+G ++V KPLYK KMI +LE ++ + +Q + EG+
Sbjct: 926 LNHDTSNTIKTELRRKGHLLMVNKPLYKAKMIHILEAVIKERNHELQKK---NMKEGD-- 980
Query: 876 EIRGSIANYSASKHQKFRKCSFEFSSICPGESS-----SRREDLIHTMFRERHQIGSSRR 930
H+ S F + + S S + + T E + +SR+
Sbjct: 981 ------------LHEFLEIDSTHFDAATSSDDSDISEISEKPIVKLTNENEHLEENNSRK 1028
Query: 931 DQPCSSSNSSS--------------------NQKRILEGLRILLAEDTPLIQIVACKILE 970
++ CSS + N K+ LEGLRILLAEDTP+IQ VA +LE
Sbjct: 1029 EESCSSEEKKAKETNFATQGYDRVTRTRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLE 1088
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG----SPSETPDTPRFDLILMDCQM 1026
K+GA V V DG QAV+ALN M +AE RR SL + S +E ++DLILMDCQM
Sbjct: 1089 KMGAVVVAVGDGQQAVDALNYMASAEDCRRESLQKDRNTRSQTEILTCHQYDLILMDCQM 1148
Query: 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMV 1086
PKMDGYEAT EIRKSE E ++IPIVALTAHAM+ DE KCL VGM+AYLTKPID + MV
Sbjct: 1149 PKMDGYEATKEIRKSE-EGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMV 1207
Query: 1087 STILRLTK 1094
STIL LTK
Sbjct: 1208 STILSLTK 1215
>gi|60545052|gb|AAQ10680.2| cold inducible histidine kinase 1 [Catharanthus roseus]
Length = 1205
Score = 1350 bits (3494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1144 (60%), Positives = 857/1144 (74%), Gaps = 61/1144 (5%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIG+LT+LTWHFT+VYTT+SL TLAYGLRYEL QRP+LRMWNI+NST EIT AQVK
Sbjct: 74 MLAILIGMLTLLTWHFTKVYTTRSLKTLAYGLRYELPQRPILRMWNILNSTVEITTAQVK 133
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVI++Y+KP QA+Q++LYEVMRDVTWA+FASR+AL+AITINY+NGFVQAFHRDHRS
Sbjct: 134 LSEYVIRKYSKPVNQAQQVELYEVMRDVTWALFASRRALSAITINYRNGFVQAFHRDHRS 193
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNT+YIYSDL+NYSI SG YD++L++SR+GWNDQSI+GN+SAIWYREPLDP TGEKIGK
Sbjct: 194 NNTYYIYSDLANYSI--SGSYDTSLLASRQGWNDQSIQGNLSAIWYREPLDPATGEKIGK 251
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
+SPI PD+LINIAGISQVPDG ASWHVAVSK+T+SPLLSAALPVWD T + IVAVVGV
Sbjct: 252 SSPISPDELINIAGISQVPDGQASWHVAVSKYTDSPLLSAALPVWDST--KEIIVAVVGV 309
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKE VHSGHIYLTSQEG+ LATSTN PLL NSSTGP L+ AVDS V
Sbjct: 310 TTALYSVGQLMKETCRVHSGHIYLTSQEGWWLATSTNTPLLMNSSTGPKLMMAVDSQEFV 369
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GA+ LQ YG+K PP H +H++NAKLG++ YY+D+FFLNLKRLP+VGVII+PR+Y+M
Sbjct: 370 IRSGAECLQKTYGNKFPPNHEVHIENAKLGNQLYYIDSFFLNLKRLPMVGVIILPRKYVM 429
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTL+ LISAS+CILVIGC+CI ILTNGVS+EMKLRAE ISHLDARRKAEAS+
Sbjct: 430 GKVDERAFKTLLALISASLCILVIGCVCIFILTNGVSREMKLRAEFISHLDARRKAEASS 489
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD LTNEQ++ V QI+K S ALLRLLN IL
Sbjct: 490 NYKSQFLANMSHELRTPMAAVIGLLDILMSDDCLTNEQFANVTQIRKCSTALLRLLNNIL 549
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE TEFDL +ELE LVDMFSVQC NHNVET+LDLS+++P+ VRGD RV
Sbjct: 550 DLSKVESGKLVLEETEFDLGRELEGLVDMFSVQCINHNVETILDLSEDMPKFVRGDSARV 609
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ-ANN 599
QIF+NLI+NS+KFT+SGHII+RGWCEN + S + ++K+ R R KLK Q +N+
Sbjct: 610 VQIFANLISNSMKFTTSGHIIVRGWCENQNPSISIRSSSINQKECWRLQRLKLKHQDSND 669
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+FR++NK+ L FEV+DTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 670 QKSFRKENKVVLWFEVEDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 729
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLG--ASSESKQIYDADFP----NTVVVLATVGSMER 713
NKMGGEIKVVKKN GTLM+L LLL A+ + F V+LA G M R
Sbjct: 730 NKMGGEIKVVKKNGAGTLMRLCLLLNTPAADPHGIVKHCQFKFEQHKLTVLLALNGRMGR 789
Query: 714 MIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIK 773
+I+SQWL+K V+T E SEW+ LTQIL E S + S +P EP E +I+
Sbjct: 790 LILSQWLKKNGVNTCEASEWNELTQILLENFQCKSYIHS----SPSEISEP---EEVDIQ 842
Query: 774 ALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQ 833
A ++++VID+ LLDL +D+W+EQL+ LD + +A FAW++NH T++ IK+EL + G
Sbjct: 843 ASSFSIFIIVIDVGLLDLRTDIWKEQLSYLDEYFGRAKFAWILNHDTSNTIKSELRQRGH 902
Query: 834 NIVVTKPLYKGKMIQLLETAVRGKILGMQ---NRISSTTNEGNGEEIRG-SIANYSASKH 889
+++ +P+Y K+I + E ++ + + +Q N + +T EG E + + A+
Sbjct: 903 LLMINRPIYMAKLIHIFEAVMKDQNVELQKYMNTLKATAAEGYLSECHEIDVIPFCAASS 962
Query: 890 QKFRKCSFE-FSSICPGESSSRREDLIHTMF----------------------------- 919
K E SS+ P ++ + + H
Sbjct: 963 DDSDKSERENSSSVSPVQAGEKTYEKFHIASACQNRTLNNYFVEFPQSNLEENSFDMRNR 1022
Query: 920 -----RERHQIGS-SRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
RERH+ S + +D+ S+ + N+++ L+GLRILLAEDTP++Q VA +LEK+G
Sbjct: 1023 GVKGPRERHKNSSVNSKDRDTQSNGTLWNEQKSLDGLRILLAEDTPVLQRVATIMLEKLG 1082
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
A V V DGLQAV+AL M + S S + + T + + LILMDCQMPKMDGY
Sbjct: 1083 AKVVAVGDGLQAVDALRFMFDSNQSNLESPEEDVINST--SLPYHLILMDCQMPKMDGYA 1140
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
AT IRKSE G +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LT
Sbjct: 1141 ATKAIRKSEMGTGL-HIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLT 1199
Query: 1094 KNMP 1097
+ +P
Sbjct: 1200 RRIP 1203
>gi|18398532|ref|NP_565424.1| histidine kinase 1 [Arabidopsis thaliana]
gi|332278154|sp|Q9SXL4.2|AHK1_ARATH RecName: Full=Histidine kinase 1; AltName: Full=Arabidopsis histidine
kinase 1; Short=AtHK1; AltName: Full=Protein AUTHENTIC
HIS-KINASE 1
gi|330251597|gb|AEC06691.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 1343 bits (3476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/1138 (60%), Positives = 851/1138 (74%), Gaps = 71/1138 (6%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLTVLTWHFTR+YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVK
Sbjct: 87 MLAILIGLLTVLTWHFTRIYTKQSLQTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVK 146
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD S
Sbjct: 147 LSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPAS 206
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
++TFYI+SDL NYSI +GP D + GWN++SI GN+SAIWY++ LDP+TGE +GK
Sbjct: 207 SSTFYIFSDLKNYSISGTGPEDVS------GWNNKSIHGNMSAIWYQQQLDPVTGENLGK 260
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
IPPDDLINIAGISQVPDG ASWHV VSK+ +SPLLSAALPV+D SNKSIVAVVGV
Sbjct: 261 PLKIPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVAVVGV 318
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLM++LVEVH GHIYLTSQEGYLLATST+ PLL N+S GP L+KA DS+ V
Sbjct: 319 TTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLKNTSNGPQLMKATDSEEWV 378
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GAQWL+ YGSK P HV+H +N KLG ++YY+D+F+LNLKRLPIVGV+IIPR++IM
Sbjct: 379 IKSGAQWLEKTYGSKRP--HVVHAENVKLGDQRYYIDSFYLNLKRLPIVGVVIIPRKFIM 436
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTLIILISASVCI IGC+CILILTNGVSKEMKLRAELI LDARR+AEAS+
Sbjct: 437 GKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASS 496
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV QI+K S ALLRLLN IL
Sbjct: 497 NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNIL 556
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P VRGD R+
Sbjct: 557 DLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARL 616
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCEN+++ + DR+K +TK Q N+
Sbjct: 617 VQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMKTKQVQHRNHL 676
Query: 601 M-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + NK+ L FEVDDTGCGID SKW++VFESFEQ DPSTTR HGGTGLGL IVR LV
Sbjct: 677 QKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLV 736
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN--TVVVLATVGSMERMIIS 717
NKMGGEIKVV+KN GTLM+LYL+L Q DF VV+L+ GS RMI S
Sbjct: 737 NKMGGEIKVVQKNGLGTLMRLYLILSTPDTVDQNIQPDFSKYGLVVMLSMYGSTARMITS 796
Query: 718 QWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777
+WLRK ++T+E S+W+ LTQI+R+LL+ S N FD+ ++ +PL+AE++NI + +
Sbjct: 797 KWLRKHGIATVEASDWNELTQIIRDLLETGS--RDNSFDSQHNISDPLRAELSNIVEIKN 854
Query: 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVV 837
PV+V+V+DI +LDL++++W+EQLN LD F KA FAW++ H T++ +KTEL R+G ++V
Sbjct: 855 PVFVIVVDIGVLDLTTNIWKEQLNYLDRFSNKAKFAWLLKHDTSNTVKTELRRKGHVMMV 914
Query: 838 TKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897
KPLYK KMIQ+LE ++ + G+ N + N GNG + + +F CS
Sbjct: 915 NKPLYKAKMIQILEAVIKNRKRGLCNDLR---NRGNGSDESHDCLEIDPT---QFDTCSS 968
Query: 898 EFSSICPGE---SSSRREDLIHTMFRERHQI-GSSRRDQPCSSSNSSSN----------- 942
+ SS GE S + +H+ + + I ++ D S+S + N
Sbjct: 969 DDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRLY 1028
Query: 943 --------QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN-RML 993
++ LEG+RILLAEDTP++Q VA +LEK+GATV+ V DG QAV++LN + +
Sbjct: 1029 SGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSI 1088
Query: 994 AAE-----------------SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
A+ ++R SL SP +DLILMDCQMPKMDGYEAT
Sbjct: 1089 NAQAPTEEHKSFEEETANKVTTRETSLRNSSP--------YDLILMDCQMPKMDGYEATK 1140
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
IR++E +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1141 AIRRAEI-GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLTK 1197
>gi|4586626|dbj|BAA32085.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 1342 bits (3472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1138 (60%), Positives = 850/1138 (74%), Gaps = 71/1138 (6%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLTVLTWHFTR+YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVK
Sbjct: 87 MLAILIGLLTVLTWHFTRIYTKQSLQTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVK 146
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD S
Sbjct: 147 LSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPAS 206
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
++TFYI+SDL NYSI +GP D + GWN++SI GN+SAIWY++ LDP+TGE +GK
Sbjct: 207 SSTFYIFSDLKNYSISGTGPEDVS------GWNNKSIHGNMSAIWYQQQLDPVTGENLGK 260
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
IPPDDLINIAGISQVPDG ASWHV VSK+ +SPLLSAALPV+D SNKSIVAVVGV
Sbjct: 261 PLKIPPDDLINIAGISQVPDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVAVVGV 318
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLM++LVEVH GHIYLTSQEGYLLATST+ PLL N+S GP L+KA DS+ V
Sbjct: 319 TTALYSVGQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLKNTSNGPQLMKATDSEEWV 378
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GAQWL+ YGSK P HV+H +N KLG ++YY+D+F+LNLKRLPIVGV+IIPR++IM
Sbjct: 379 IKSGAQWLEKTYGSKRP--HVVHAENVKLGDQRYYIDSFYLNLKRLPIVGVVIIPRKFIM 436
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTLIILISASVCI IGC+CILILTNGVSKEMKLRAELI LDARR+AEAS+
Sbjct: 437 GKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASS 496
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV QI+K S ALLRLLN IL
Sbjct: 497 NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNIL 556
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P VRGD R+
Sbjct: 557 DLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARL 616
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCEN+++ + DR+K +TK Q N+
Sbjct: 617 VQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRRKPWAPMKTKQVQHRNHL 676
Query: 601 M-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + NK+ L FEVDDTGCGID SKW++VFESFEQ DPSTTR HGGTGLGL IVR LV
Sbjct: 677 QKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLV 736
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN--TVVVLATVGSMERMIIS 717
NKMGGEIKVV+KN GTLM+LYL+L Q DF VV+L+ GS RMI S
Sbjct: 737 NKMGGEIKVVQKNGLGTLMRLYLILSTPDTVDQNIQPDFSKYGLVVMLSMYGSTARMITS 796
Query: 718 QWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777
+WLRK ++T+E S+W+ LTQI+R+LL+ S N FD+ ++ +PL+AE++NI + +
Sbjct: 797 KWLRKHGIATVEASDWNELTQIIRDLLETGS--RDNSFDSQHNISDPLRAELSNIVEIKN 854
Query: 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVV 837
PV+V+V+DI +LDL++++W+EQLN LD F KA FAW++ H T++ +KTEL R+G ++V
Sbjct: 855 PVFVIVVDIGVLDLTTNIWKEQLNYLDRFSNKAKFAWLLKHDTSNTVKTELRRKGHVMMV 914
Query: 838 TKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897
KPLYK KMIQ+LE ++ + G+ N + N GNG + + +F CS
Sbjct: 915 NKPLYKAKMIQILEAVIKNRKRGLCNDLR---NRGNGSDESHDCLEIDPT---QFDTCSS 968
Query: 898 EFSSICPGE---SSSRREDLIHTMFRERHQI-GSSRRDQPCSSSNSSSN----------- 942
+ SS GE S + +H+ + + I ++ D S+S + N
Sbjct: 969 DDSSETSGEKQVDKSVKPSTLHSPVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRLY 1028
Query: 943 --------QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN-RML 993
++ LEG+R LLAEDTP++Q VA +LEK+GATV+ V DG QAV++LN + +
Sbjct: 1029 SGIALDGKNQKSLEGIRFLLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSI 1088
Query: 994 AAE-----------------SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
A+ ++R SL SP +DLILMDCQMPKMDGYEAT
Sbjct: 1089 NAQAPTEEHKSFEEETANKVTTRETSLRNSSP--------YDLILMDCQMPKMDGYEATK 1140
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
IR++E +IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1141 AIRRAEI-GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLTK 1197
>gi|297836494|ref|XP_002886129.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
gi|297331969|gb|EFH62388.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
Length = 1194
Score = 1316 bits (3407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/1132 (59%), Positives = 847/1132 (74%), Gaps = 61/1132 (5%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLTVLTWHFTR+YT +SL TLAYGLRYELLQRP+LRMW+++N+T+E+T AQVK
Sbjct: 76 MLAILIGLLTVLTWHFTRIYTKQSLKTLAYGLRYELLQRPVLRMWSVLNTTSELTTAQVK 135
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVIK+Y+KP TQ E +++Y+ M+DVTWA+FAS KALNAITINY+NGFVQAFHRD S
Sbjct: 136 LSEYVIKKYDKPTTQEELVEMYQAMKDVTWALFASAKALNAITINYRNGFVQAFHRDPAS 195
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
++TFYI+SDL NYSI GP D + GWN+QSI GN++AIWY++ LDP+TGEK+GK
Sbjct: 196 SSTFYIFSDLKNYSISGIGPEDVS------GWNNQSIHGNMTAIWYQQQLDPVTGEKLGK 249
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
IPPDDLINIAGI QVPDG ASWHV VSK+ +SPLLSAALPV+D SNKSIV VVGV
Sbjct: 250 PLKIPPDDLINIAGILQVPDGEASWHVTVSKYMDSPLLSAALPVFD--ASNKSIVDVVGV 307
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLM++LV+VH GHIYLTSQEGYLLATSTN PLL N++ GP L+KA+DS+ V
Sbjct: 308 TTALYSVGQLMRDLVDVHGGHIYLTSQEGYLLATSTNGPLLKNTTNGPKLMKAIDSEEWV 367
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GAQWL+ YGSK P +H +N KLG+++YY+D+F+LNLKRLPI+GV+IIPR++IM
Sbjct: 368 IRAGAQWLEKTYGSKRP--QEVHAENVKLGNQRYYIDSFYLNLKRLPIIGVVIIPRKFIM 425
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTLIILISASVCI IGC+CILILTNGVSKEMKLRAELI LDARR+AEAS+
Sbjct: 426 GKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIRQLDARRRAEASS 485
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L+NEQY+TV QI+K S ALLRLLN IL
Sbjct: 486 NYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNIL 545
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE EFDL +ELE LVDMFSVQC NHNVETVLDLSD++P VRGD R+
Sbjct: 546 DLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPALVRGDSARL 605
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCEN+++ + DRKK +TKL Q N+
Sbjct: 606 VQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMRLTVDRKKPWAPMKTKLVQHRNHL 665
Query: 601 M-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + NK+ L FEVDDTGCGI+ SKW++VFESFEQ DPSTTR HGGTGLGL IVR LV
Sbjct: 666 QKSCKNANKMVLWFEVDDTGCGIESSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLV 725
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP--NTVVVLATVGSMERMIIS 717
NKMGGEIKVV+KN GTLM+LYL+L + Q DF VV+L+ GS RMI S
Sbjct: 726 NKMGGEIKVVQKNGLGTLMRLYLILSTPETADQNIQPDFSKYGLVVLLSMYGSTARMITS 785
Query: 718 QWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777
+WLRK ++T+E S+W+ LTQI+R+LL+ S N FD+ + + L+AE++NI+ + +
Sbjct: 786 KWLRKHGIATVEASDWNELTQIIRDLLEMGS--RDNSFDSQNNIADSLRAELSNIEEIKN 843
Query: 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVV 837
PV+VVV+DI +LDL++D+W+EQLN LD F KA FAW++ H T++ +KTEL R+G ++V
Sbjct: 844 PVFVVVVDIGVLDLTTDIWKEQLNYLDRFSNKAKFAWLLKHDTSNIVKTELRRKGHVMMV 903
Query: 838 TKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897
KPLYK KMIQ+LE ++ + R + N GNG + + +F CS
Sbjct: 904 NKPLYKAKMIQILEAVIKNR-----KRCNGLRNRGNGSDESHDFLEIDPT---QFDTCSS 955
Query: 898 EFSSICPGE---SSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSS------------- 941
+ SS GE S + +H+ + + I ++ + +S++++
Sbjct: 956 DDSSETSGEKHIDKSVQPSTLHSPVLKNYLIDANNSNDDSTSASTTQKNLEEEDWKDRLY 1015
Query: 942 --------NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN--- 990
NQK LEG+RILLAEDTP++Q VA +LEK+GATV+ V DG QAV++LN
Sbjct: 1016 SGIALDGKNQKS-LEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYRS 1074
Query: 991 --------RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
++E + + S +P +DLILMDCQMPKMDGY+AT IR++E
Sbjct: 1075 INVQDPTGEPTSSEEETANNSINPQSSLRNSSP-YDLILMDCQMPKMDGYDATKAIRRAE 1133
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+IPIVALTAHAM++DE KCL VGM+AYLTKPID + MVSTIL LTK
Sbjct: 1134 I-GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSLTK 1184
>gi|357517985|ref|XP_003629281.1| Histidine kinase [Medicago truncatula]
gi|355523303|gb|AET03757.1| Histidine kinase [Medicago truncatula]
Length = 1173
Score = 1313 bits (3399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/1131 (59%), Positives = 835/1131 (73%), Gaps = 65/1131 (5%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFT++YTTKSL++LAY LRYELLQRP+LRMWNI+NSTAEIT AQVK
Sbjct: 65 MLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVK 124
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVI+ + ATQAEQ+++YE MR VTWA+FASRKALN+IT+ Y+NGFVQAFHRD +
Sbjct: 125 LSEYVIRSHGNLATQAEQVEMYESMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKD 184
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NN FYIY+DLS + ++N ++ E N SAIWYRE LDP+ GEKIGK
Sbjct: 185 NNIFYIYTDLSYH--------ETNSFAAHE-----DTHSNKSAIWYREQLDPVNGEKIGK 231
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
A I P+D I+IAG+SQVPDGVASWHV+V KFT+SPLLSAALPVWD +SNKSIVAVVGV
Sbjct: 232 AMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWD--SSNKSIVAVVGV 289
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLMKELV+ HSGH+YLTSQEGYLLATSTN PLLTNS+ P L AVD DN V
Sbjct: 290 TTALYSVGQLMKELVDKHSGHMYLTSQEGYLLATSTNDPLLTNSTKKPKLKMAVDCDNEV 349
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+ GA WL+ Y + PP H +H +NA+LGH+QYY+D+FFL LK+LP+VGVIIIPR++IM
Sbjct: 350 IREGAMWLKKTYENNFPPSHEVHEENARLGHQQYYIDSFFLILKKLPLVGVIIIPRKHIM 409
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
G+ADERA+KTL+ILISAS+CI+VIGC+CILILTNGVSKEM LRAELISHL+ARRKAEAS+
Sbjct: 410 GQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEASS 469
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL SDD+LTNEQ +TV QI+K S ALL LLN IL
Sbjct: 470 NYKSQFLANMSHELRTPMAAVIGLLDILLSDDRLTNEQCATVTQIRKCSTALLHLLNNIL 529
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
D+SKVESGK+ LE EFD +ELE LVDMFSVQC NHNVE +LDLSD++P+ VRGD RV
Sbjct: 530 DISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARV 589
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLINNSIKFT SGHII+RGWCEN ++ ++ F ++K FG + +TK+KQ N++
Sbjct: 590 VQIFANLINNSIKFTLSGHIILRGWCENPNSYGDSENFTLEQKPFGCSRKTKMKQHENHS 649
Query: 601 MNFRE-DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
DNK+ L FEVDDTGCGID SKW++VFESFEQ D STTR HGGTGLGL IVR+LV
Sbjct: 650 KKASNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLV 709
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSE-SKQIYDADFPNT--VVVLATVGSMERMII 716
NKMGGEIK+VKK PGTLM+LY+ L A + ++Q DF N +V+LA G+M R+I
Sbjct: 710 NKMGGEIKIVKKEGPGTLMRLYMQLTAPVDATEQHCQVDFANNNLMVLLALHGNMSRLIT 769
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
S+WL+K V T+E SEW+GLTQIL+EL + + +N FD + + E L ++ +I+ L
Sbjct: 770 SKWLQKNGVLTMEASEWNGLTQILKELFEAKTSTHNNDFDTHFPAPEGLNSKFISIQELP 829
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
+P +V+V+DI LLDLS+D+W+EQLN L ++ +A F W+ NH +++ +KTEL ++G +
Sbjct: 830 NPTFVIVVDIDLLDLSTDIWKEQLNFLHKYYARAKFVWLQNHDSSNTVKTELRKKGHILT 889
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRI------------------------------- 865
V KPLYK KMI +LE ++ + + +Q +
Sbjct: 890 VNKPLYKAKMIHILEDVIKERNVEVQKKNMKEDDLHESLEIEYTHHCDVASSDGSDISEI 949
Query: 866 -SSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFR-ERH 923
SS NGE+ R + + S + C S+ +E I T + E
Sbjct: 950 GSSNLVTANGEKQREEVVRINPSSLYQKSNCLLGLSN----GYMEHKEAFISTRAKGEDS 1005
Query: 924 QIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
+ G + R S S+ + N K+ LEGLRILLAEDT +IQ VA +LEK+GATV V DG
Sbjct: 1006 KGGETSR---VSGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQ 1062
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES 1043
QAV+ALN M E R ++ S +E P +DLILMDCQMPKMDGYEAT EIRKSE
Sbjct: 1063 QAVDALNGMPGVE---RNTI--TSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEI 1117
Query: 1044 EHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+ +IPIVALTAHAM+ DE KCL VGM+AYLTKPID + M STIL LTK
Sbjct: 1118 G-TSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTK 1167
>gi|62433091|emb|CAI78447.1| osmosensor histidine-aspartate kinase [Populus x canadensis]
Length = 1249
Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/871 (71%), Positives = 727/871 (83%), Gaps = 10/871 (1%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGLLT+LTWHFTR YT KSLDTLA GLRYELLQRP+LRMWNI+NSTAEITAAQVK
Sbjct: 86 MLAILIGLLTILTWHFTRSYTKKSLDTLASGLRYELLQRPILRMWNILNSTAEITAAQVK 145
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LSEYVI RY+K QAEQ++LYEVMR VTWA+F+SRKALNAITINY+NGFVQAFHRDHRS
Sbjct: 146 LSEYVIGRYSKTTIQAEQVELYEVMRHVTWALFSSRKALNAITINYRNGFVQAFHRDHRS 205
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
NNTFYIYSDL NYSI T GP D+N+ S WNDQSI N SAIWYREPLDP +GEKIGK
Sbjct: 206 NNTFYIYSDLRNYSINTKGPSDANMFLSHPAWNDQSIHSNFSAIWYREPLDPTSGEKIGK 265
Query: 181 ASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGV 240
ASPIPPDDLINIAG+SQVPDGVASWHVAVSK+T+SPLLSAALPVWD NKSIVAVVGV
Sbjct: 266 ASPIPPDDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWD--AYNKSIVAVVGV 323
Query: 241 TTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPV 300
TTAL SVGQLM+ELVEVH G+IYLTSQEGYLLATSTNAPLLTNS T PNL+ AVD++ P
Sbjct: 324 TTALYSVGQLMRELVEVHKGYIYLTSQEGYLLATSTNAPLLTNS-TRPNLIMAVDTEEPT 382
Query: 301 IQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIM 360
I+MGA+WL+ YG+K PPGHV+HV+NAKLG +Q Y+D+FFLNLK+LPIVGVIIIPR YIM
Sbjct: 383 IRMGARWLERVYGNKFPPGHVVHVENAKLGKQQCYIDSFFLNLKKLPIVGVIIIPRRYIM 442
Query: 361 GKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASN 420
GK DERA+KTL+ILISAS+CILVIGC+ ILILTNGVSKEMKLRAELISHLDARR+AEASN
Sbjct: 443 GKVDERAFKTLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEASN 502
Query: 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
NYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+ V QI+K S ALLRLLN IL
Sbjct: 503 NYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNIL 562
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD +P+ VRGD RV
Sbjct: 563 DLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEMPKLVRGDSARV 622
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QIF+NLI+NSIKFT++GHII+RGWCENL+ + N +F D+KK A + KL+QQ N+
Sbjct: 623 VQIFANLISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKMRCAIKPKLRQQGNHL 682
Query: 601 MN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+++NK+ L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTLV
Sbjct: 683 KKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLV 742
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY-DADFP--NTVVVLATVGSMERMII 716
NKMGGEIKVVKKN PGTLM+LYLLL ++ ++ DF N VV++A GSM R+I+
Sbjct: 743 NKMGGEIKVVKKNGPGTLMRLYLLLKTPADGADLHCQVDFSSHNAVVLVALNGSMGRVIM 802
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776
SQWLR+ ++TL SEW+ LT++LR+ + NGFD S EPLK+E+ NI+ +
Sbjct: 803 SQWLREIGLTTLGVSEWNELTRVLRKFFH--ARRRENGFDVQCSLNEPLKSEVLNIEDMK 860
Query: 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIV 836
D ++++V+D+ LLDLS+D+W+EQ+N LD F KA FAW++NH T++ IK EL ++G ++
Sbjct: 861 D-LFIIVVDVGLLDLSTDIWKEQINFLDNFSGKAKFAWMLNHDTSNAIKMELRKKGHLLM 919
Query: 837 VTKPLYKGKMIQLLETAVRGKILGMQNRISS 867
V KPLYK KMI +LET ++ K L Q + S+
Sbjct: 920 VNKPLYKAKMIHILETVIKEKDLEYQKKSSN 950
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/195 (55%), Positives = 137/195 (70%), Gaps = 8/195 (4%)
Query: 904 PGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQI 963
P +++R E H ER+ SS ++Q S SN + NQ++ L+GLRILLAEDTP++Q
Sbjct: 1056 PFSTATRNESSKHD---ERNSETSSHKEQGNSYSNKAGNQQKALDGLRILLAEDTPVLQR 1112
Query: 964 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ----GSPSETPDTPRFDL 1019
VA +LEK+GA V V DGLQAVEALN L+ + RR S G ++ ++ +DL
Sbjct: 1113 VATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRESPGNDGNTGLQTDIQESQSYDL 1172
Query: 1020 ILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1079
ILMDCQMPKMDGYEAT IRKSE+ +IPIVALTAHAM++DE KCL VGM+AYLTKP
Sbjct: 1173 ILMDCQMPKMDGYEATKAIRKSETGTDL-HIPIVALTAHAMSSDEAKCLEVGMDAYLTKP 1231
Query: 1080 IDSERMVSTILRLTK 1094
ID + MVSTIL LT+
Sbjct: 1232 IDYKLMVSTILSLTR 1246
>gi|168003958|ref|XP_001754679.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
gi|162694300|gb|EDQ80649.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1189
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1168 (45%), Positives = 715/1168 (61%), Gaps = 115/1168 (9%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLA+LI LLT+LTWHFT VYTT+S+ LAYGLR ELL RP+ RMWN++N+T E T +QV+
Sbjct: 59 MLAVLIALLTILTWHFTTVYTTRSIKNLAYGLRTELLNRPIARMWNLLNNTVEATLSQVQ 118
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS++V+ +Y P A Q+Q++ MR+ TWA+FASRK+ +I + Y+NG +QAF RD +
Sbjct: 119 LSQFVVGQYTLPMDAATQVQVHRSMRNATWAIFASRKSAKSIIVAYRNGQLQAFDRDSTT 178
Query: 121 NNTFYIYSD------LSNYSIGTSGPYDSNLISSR-EGWNDQSIKGNISAI-WYREPLDP 172
NNT Y+Y++ L + + P + L + W D + N S I WY E ++
Sbjct: 179 NNTIYVYTNASAGDPLGGVDLLSPSPAAAPLTDAPVTTWPDGPV--NTSNITWYTETVNS 236
Query: 173 ITGEKIGKASPIPPDDLINIAGISQVPDGV-------ASWHVAVSKFTNSPLLSAALPVW 225
TG G +SP ++ +S+ D V +W V VS+F ++PLLS+A P+
Sbjct: 237 YTG---GSSSP---PNVTQSYDLSKSIDDVLFLRNTEVTWRVTVSEFEDTPLLSSAAPI- 289
Query: 226 DPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSS 285
+ IVAV G+TTALSS+ Q ++EL HSG++YLT+ +G LLA STN+ ++ S
Sbjct: 290 -RHQGSDMIVAVTGITTALSSISQFLRELTSTHSGYLYLTTSKGQLLAASTNSSMINTSG 348
Query: 286 TGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKR 345
LV A +S + VI+ GAQWL YG + V+H +N L K+YY+DTF L+L R
Sbjct: 349 PIRTLVMANESSDAVIKAGAQWLNERYGFEGLVQTVVHAENVVLEGKRYYIDTFCLSLPR 408
Query: 346 LPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAE 405
L +VGVIIIPR Y+MG+ D R TL ILI+ S CIL++GC+ I+ T+GVS EMKLRAE
Sbjct: 409 LKMVGVIIIPRTYVMGEVDRRGKATLAILIAISSCILLVGCVFIIFFTSGVSTEMKLRAE 468
Query: 406 LISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQI 465
LI HLDARR+AEAS+NYKSQFLANMSHELRTPMAA+IGLL+IL SDD L++EQ + V QI
Sbjct: 469 LIKHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLSSEQVNMVSQI 528
Query: 466 KKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDL 525
++ S ALLRLLN ILD+SKVESGK+ LE +FDL +ELE LVDMFSVQC +H++E VLDL
Sbjct: 529 RRCSTALLRLLNNILDISKVESGKLVLEAADFDLNRELEGLVDMFSVQCVDHDIEIVLDL 588
Query: 526 SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 585
+D++PR VRGD R QIF+NLI NS+KFTSSGH+I+RGW + + S N +
Sbjct: 589 ADDMPRMVRGDSARTVQIFANLIANSVKFTSSGHVILRGWSGSTNMSANAM-------RS 641
Query: 586 GRAFRTKLKQQAN------NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
G F T + N N ++ K L FEV+DTGCGID SKWE VF+SF Q DP
Sbjct: 642 GLLFGTNDMWEPNWQGDVTGGTNNQDLGKFLLWFEVEDTGCGIDSSKWEAVFDSFVQADP 701
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
STTR +GGTGLGL IVR+LV KMGG+IK+VKK PGTL++LYL++G +S + + P
Sbjct: 702 STTRTYGGTGLGLCIVRSLVRKMGGDIKIVKKEGPGTLLRLYLVVGQPVDS----EPEMP 757
Query: 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPY 759
V+LA G + R I++QW+ + + E SEW Q+L +LL S + + P
Sbjct: 758 RMSVLLAMKGDVGRGILAQWMHYRGLHVYEASEWDEAVQVLEDLLTDEHSASRDAKEIPD 817
Query: 760 S------SREPLKAEMTNIKALIDPVYVVVIDIALLDLS--SDLWREQLNSLDIFH-RKA 810
S P + EM N K+L V+D L+ S S L+ LD F R
Sbjct: 818 DEVSLVLSGNPEQWEMQNFKSL------AVLDSELIPWSENSKQVESMLDVLDEFRDRGI 871
Query: 811 MFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV--------RGKILGMQ 862
+ +W+ H T + +KT+L R G +I +PLYK K++QLL + + R I +Q
Sbjct: 872 LISWLFTHDTPNALKTQLRRRGYSITANQPLYKSKLLQLLTSMLGCIERGSSRHSIFDLQ 931
Query: 863 NR---ISSTTNEGNGEEIR-GSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHT- 917
+ N G ++I+ +I Y K Q S +C S ++H
Sbjct: 932 ASPVMSNGHRNSGYFDDIKSAAIDRYELEKQQ---------SQVCVLGDGSDGHHVVHIS 982
Query: 918 -----MFRERHQIGSSRRD-----------------------QPCSSSNSSSNQ---KRI 946
+ + H S +D +P +S+N+
Sbjct: 983 PSMSLLSNQSHSEASKPQDASNWSNQDATKTQALVTHSNETKEPSIPRKASANRLGPSNA 1042
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G+RILLAEDTP++ VA +LEK+GA V V DGLQAVE + R A++ G
Sbjct: 1043 LAGIRILLAEDTPVLAKVATIMLEKMGARVVAVGDGLQAVETIGRSREAQNVAE----TG 1098
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ P +FDL+LMDCQMP+MDGYEAT IRK+E E ++P+VALTAHAM++DE K
Sbjct: 1099 ESTTPPTVDKFDLVLMDCQMPRMDGYEATKAIRKAE-EGKDWHLPVVALTAHAMSSDEAK 1157
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
CL VGM+AYLTKPIDS+ MVSTIL LTK
Sbjct: 1158 CLQVGMDAYLTKPIDSKLMVSTILGLTK 1185
>gi|168015329|ref|XP_001760203.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
gi|162688583|gb|EDQ74959.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1191
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/1180 (44%), Positives = 713/1180 (60%), Gaps = 135/1180 (11%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLA+LI LLT+LTWHFT VYTT+S+ LA+GLR ELL RP+ RMWN++N+T E T +QV+
Sbjct: 57 MLAVLIALLTILTWHFTTVYTTRSIKNLAFGLRTELLNRPIARMWNLLNNTVEATLSQVQ 116
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS++V+ Y P + Q+Q++ MR++ WA++A RK+ +ITI Y+NG +QAF R+ +
Sbjct: 117 LSQFVLGEYTLPIDASTQVQVHRTMRNIFWAVYAGRKSAKSITIAYRNGQLQAFDRNMVT 176
Query: 121 NNTFYIYSD------LSNYSIGTSGPYDSNLISSREG---WNDQSIK-GNISAIWYREPL 170
N TFYI++D L S+ + P S + W D ++ GNI+ WY+EP+
Sbjct: 177 NETFYIFTDPSVGAPLGGVSVIGASPAPSPATDAPAPVTMWPDIPLENGNIT--WYKEPI 234
Query: 171 DPITGEKIGKASPI--PPDDLI------NIAGISQVPDGVASWHVAVSKFTNSPLLSAAL 222
+P TG+ +SPI P ++ NI + + SW + V++ ++PLLS+A
Sbjct: 235 NPYTGKA---SSPINITPINITSYDLSKNIDYVLALKSTEVSWRLVVTESDDTPLLSSAT 291
Query: 223 PVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLT 282
PV + +VAV GVT ALSS+ Q ++EL HSG++YLT+ +G LLATSTNA L+
Sbjct: 292 PV--RYRDSGIVVAVTGVTAALSSISQFLRELTSSHSGYLYLTTADGQLLATSTNASLID 349
Query: 283 NSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLN 342
+S LV A +S +PVI+ GAQWL + +G + V+H +N L K+YY+DTF L+
Sbjct: 350 SSGPRRTLVLANESSDPVIKAGAQWLYARHGFEGLVKTVVHAENVVLEGKRYYIDTFSLS 409
Query: 343 LKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKL 402
L L +VGVIIIPR Y+MG+ D TL ILI+ S CIL +GC I+ T+GVS EMKL
Sbjct: 410 LSGLQMVGVIIIPRTYVMGEVDRSGRATLAILIAISCCILFVGCFFIIFFTSGVSTEMKL 469
Query: 403 RAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTV 462
RAELI+HLDARR+AEAS+NYKSQFLANMSHELRTPMAA+IGLL+IL DD L++EQ + V
Sbjct: 470 RAELINHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLCDDCLSSEQINMV 529
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
QI++ S ALLRLLN ILD+SKVESGK+ LE +FDL +ELE LVDMFSVQC +H++E V
Sbjct: 530 SQIRRCSTALLRLLNNILDISKVESGKLVLEAADFDLNRELEGLVDMFSVQCVDHDIEIV 589
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE----F 578
LDL+D++PR VRGD R+ QIF+NLI NS+KFTSSGH+I+RGWC + + S F
Sbjct: 590 LDLADDMPRMVRGDSARIVQIFANLIANSVKFTSSGHVILRGWCSSPNMSATAMRSGLLF 649
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ + + +L + N+ E ++ + FEV+DTGCGID SKWE VFESF Q D
Sbjct: 650 GMNDSTWN---QNRLSHEGGVTNNY-EPSQFLMWFEVEDTGCGIDSSKWEAVFESFVQAD 705
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK------- 691
PSTTR +GGTGLGL IVR+LV KMGG+IK+VKK PGTL++ YLL +S+
Sbjct: 706 PSTTRTYGGTGLGLCIVRSLVRKMGGDIKIVKKEGPGTLLRFYLLFNQPVDSEPETPRPA 765
Query: 692 -QIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPV 750
+ Y + V+LA G + R + QW++ K + E SEW ++L+ELL V
Sbjct: 766 SKQYVYVYSIRQVLLAMKGDVGRGTLVQWMQYKGLHVYEASEWDEAMRVLQELLADERVV 825
Query: 751 SSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNS----LDIF 806
S +D E + E ++K+ V+D L+ S D Q++S LD F
Sbjct: 826 S---WDKGADKDELVSLEANHVKSSRSTAASPVLDSELIHWSED--SNQVDSMFSVLDEF 880
Query: 807 H-RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRI 865
R + +W+ H T + +KT+L R G I +PLYK K++QLL T++ G
Sbjct: 881 RGRGIIISWLFTHDTPNALKTQLRRRGYTITANQPLYKSKLLQLL-TSMAG--------- 930
Query: 866 SSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFS----SICPGESSSRREDLIHTMFRE 921
+EG +S H KF F S SI P E I +F E
Sbjct: 931 ---CSEGG------------SSTHFKFMSSLFNASEGPLSIGPSVGPPGIE--IPQIFCE 973
Query: 922 RHQIGS------SRRDQPCSSSNSSSNQKRI----------------------------- 946
+ QI S R P + ++ + R
Sbjct: 974 QDQIAKPDMIVVSDRGVPVQTVSNHTESSRTAQDAPAPKPAVSLPPSEVMPDKHSRAPRK 1033
Query: 947 -----------LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
L G+RILLAEDTP++ VA +LEK+GA V V DGLQAVE + R
Sbjct: 1034 PPARRLGPSNALAGIRILLAEDTPVLAKVATIMLEKMGACVVAVGDGLQAVETIGR---- 1089
Query: 996 ESSRRRSLLQGSPSETP-DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
S ++ S TP + FDL+LMDCQMP+MDGYEAT IRK+E E ++P+VA
Sbjct: 1090 -SRGEHNVGDTEESTTPAEIDGFDLVLMDCQMPRMDGYEATKAIRKAE-EGKNWHLPVVA 1147
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
LTAHAM++DE KCL VGM+AYLTKPIDS+ MVSTIL LTK
Sbjct: 1148 LTAHAMSSDEAKCLQVGMDAYLTKPIDSKLMVSTILGLTK 1187
>gi|302787437|ref|XP_002975488.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
gi|300156489|gb|EFJ23117.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
Length = 1086
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1136 (42%), Positives = 680/1136 (59%), Gaps = 139/1136 (12%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGL+T+LTWHFT Y TKS+ +LAY LR ELL+R + R WN++++T + T
Sbjct: 47 MLAILIGLITILTWHFTTAYATKSIKSLAYSLRVELLKRTISRSWNLISTTLDATTTLAN 106
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS+Y+I ++ + VMR++TWA+F+SR++L +++ Y NG + AF R+ +
Sbjct: 107 LSDYMIPKHFSSILWTYTQPQHLVMRNITWAVFSSRQSLKTLSVLYSNGQLLAFDRNPLN 166
Query: 121 NNTFYIYSDLSNYS-IGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIG 179
N T+Y++S+ S S +GT +S++ + + WY+E L+P TG+ I
Sbjct: 167 NKTYYLFSNNSAASTLGTEFL--------------ESVEASTTGQWYKEELNPSTGQPID 212
Query: 180 KASPIPPDDLINIAG-ISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVV 238
A IP + + G +S + G WHVAV N LLS+A V P T+ ++A V
Sbjct: 213 SAVSIPSVNFSDYTGNVSTLKTGETFWHVAVGSTDNECLLSSAADVRHPVTNE--LMATV 270
Query: 239 GVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDN 298
VT+ALS + LMK+L +SG YLTS +G LLA+S+N L+ S GP L AVD+ +
Sbjct: 271 VVTSALSGISNLMKDLARNYSGSFYLTSYDGLLLASSSNHSLVRVLSHGPKLTPAVDAQD 330
Query: 299 PVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREY 358
VI+ GA+WL+ + + +H ++ LG K++Y+D+F+ NL LP++GVI++PR Y
Sbjct: 331 SVIRDGARWLREYHTDSILKQKEVHAEDVVLGGKKFYIDSFYWNLTGLPLIGVILLPRSY 390
Query: 359 IMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEA 418
++G D+R TLIIL+S ++ ILV+GC+ ILI T+GVS EMKLR+ELI HL AR++AEA
Sbjct: 391 VLGDVDDRGRTTLIILVSVAISILVVGCLLILIFTSGVSTEMKLRSELIKHLHARQRAEA 450
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
S+NYKSQFLANMSHELRTPMAA+IGLL+IL +D LT EQ + V QI+ S ALLRLLN
Sbjct: 451 SSNYKSQFLANMSHELRTPMAAVIGLLDILLTDACLTVEQIAIVSQIRHCSTALLRLLNN 510
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILDLSKVESGK+ LE +F+++ ELE ++DMFSVQC +++ VLDL+DN+P+ VRGD
Sbjct: 511 ILDLSKVESGKLVLEKVDFNIRHELEAVIDMFSVQCV--DIDIVLDLADNVPQMVRGDLT 568
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R QIF+NLI NSIKFTSSG+I IRGW E F ++ +
Sbjct: 569 RTVQIFANLIGNSIKFTSSGYITIRGWAE--------------------PFVSRYEPLEA 608
Query: 599 NAMNFREDNKLALCFEVDDTGC-GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ + K L FEVDD+GC GID SKWETVF+SF Q D ST+R HGGTGLGL IVR+
Sbjct: 609 SGGHI---EKFLLWFEVDDSGCAGIDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRS 665
Query: 658 LVNKMGGEIKVVKKNSPGTLMQLYLLLGA----SSESKQIYDADFPNTVVVLATVGSMER 713
LV+KMGGEIKVVKK PGTLM+ YL+ + S+ + A P+ V++ G R
Sbjct: 666 LVSKMGGEIKVVKKEEPGTLMRFYLMYDSPFEVSTPDNTTHLAQSPSFPVLIGMKGMKLR 725
Query: 714 MIISQWLRKKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSREPLKAEMTNI 772
++ W+ ++++ T +W+ L + +EL D SS++ L
Sbjct: 726 SFLTDWVAEQRLDVSSTEDWNSLIGHMDKELPD------------SESSKKLL------- 766
Query: 773 KALIDPVYVVVIDIALLDLSSDLWREQLNSLDIF-HRKAMFAWVVNHQTTSPIKTELSRE 831
VV+D LL + + + LN+L+ F R A+ +WV+NH T + +K + +
Sbjct: 767 ---------VVLDTRLLPANLEALTDHLNALNNFSKRGALVSWVLNHDTPASVKMRIRDK 817
Query: 832 GQNIVVTKPLYKGKMIQLLETAV---------------RGKILGMQNRISSTTNEG--NG 874
G +I+V KPLYK K+ LL++ V + ILG++N + G
Sbjct: 818 GYSIMVNKPLYKSKLFMLLKSLVGTLPDSFCFIPGLQWKDGILGLRNTSVDYAQDTIWYG 877
Query: 875 EE--------------IRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFR 920
+E I G +A++ + K C + G SS+R I
Sbjct: 878 KEPPKALERLSKRMDLILGEVASHVSQKTH----CGDDED----GFSSTRGSQDISHRAM 929
Query: 921 ERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP 980
E + R +P +S L G+ ILLAEDTP+IQ VA +L+K+GATV V
Sbjct: 930 ELKEYTDEERKEPRAS----------LTGIHILLAEDTPVIQKVAVVLLKKLGATVVAVA 979
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
DG AVEA + SL + + P FDLILMDCQMP+MDGY AT EIRK
Sbjct: 980 DGQAAVEAW----------KGSLKDQAVVDEERKP-FDLILMDCQMPRMDGYGATREIRK 1028
Query: 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
+E G+ ++PIVALTAHAM++DE++CL VGM+AYLTKPID + M +TIL LTK +
Sbjct: 1029 AEEGSGS-HVPIVALTAHAMSSDEERCLEVGMDAYLTKPIDCKLMATTILSLTKKI 1083
>gi|302793927|ref|XP_002978728.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
gi|300153537|gb|EFJ20175.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
Length = 1086
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1134 (42%), Positives = 675/1134 (59%), Gaps = 135/1134 (11%)
Query: 1 MLAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVK 60
MLAILIGL+T+LTWHFT Y TKS+ +LAY LR ELL+R + R WN++++T + T
Sbjct: 47 MLAILIGLITILTWHFTTAYATKSIKSLAYSLRVELLKRTISRSWNLISTTLDATTTLAN 106
Query: 61 LSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRS 120
LS+Y+I ++ + VMR++TWA+F+SR++L +++ Y NG + AF R+ +
Sbjct: 107 LSDYMIPKHFSSILWTYAQPQHLVMRNITWAVFSSRQSLKTLSVLYSNGQLLAFDRNPVN 166
Query: 121 NNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGK 180
N T+Y++S+ N + T G + S S G WY+E L+P TG+ I
Sbjct: 167 NKTYYLFSN--NSAASTLGTEFLEFVES-------STPGQ----WYKEELNPSTGQPIDS 213
Query: 181 ASPIPPDDLINIAG-ISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVG 239
A IP + + G +S + G WHVAV N LLS+A V P T+ ++A V
Sbjct: 214 AVSIPSVNFSDYTGNVSTLKTGETFWHVAVGSTDNECLLSSAADVRHPVTNE--LMATVV 271
Query: 240 VTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNP 299
VT+ALS + LMK+L +SG YLTS +G LLA+S+N L+ S GP L AVD+ +
Sbjct: 272 VTSALSGISNLMKDLARNYSGSFYLTSYDGLLLASSSNHSLVRVLSHGPKLTPAVDAQDS 331
Query: 300 VIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYI 359
VI+ GA+WL+ + + +H ++ LG K++Y+D+F+ NL LP++GVI++PR Y+
Sbjct: 332 VIRDGARWLREYHTDSILAQKEVHAEDVVLGGKKFYIDSFYWNLTGLPLIGVILLPRSYV 391
Query: 360 MGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEAS 419
+G D+R TLIIL+S ++ ILV+GC+ ILI T+GVS EMKLR+ELI HL AR++AEAS
Sbjct: 392 LGDVDDRGRTTLIILVSVAISILVVGCLLILIFTSGVSTEMKLRSELIKHLHARQRAEAS 451
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
+NYKSQFLANMSHELRTPMAA+IGLL+IL +D LT EQ + V QI+ S ALLRLLN I
Sbjct: 452 SNYKSQFLANMSHELRTPMAAVIGLLDILLTDACLTVEQIAIVSQIRHCSTALLRLLNNI 511
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSKVESGK+ LE +F+++ ELE ++DMFSVQC +++ VLDL+DN+P+ VRGD R
Sbjct: 512 LDLSKVESGKLVLEKVDFNIRHELEAVIDMFSVQCV--DIDIVLDLADNVPQMVRGDLTR 569
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
QIF+NLI NSIKFTSSG+I IRGW E F ++ + +
Sbjct: 570 TVQIFANLIGNSIKFTSSGYITIRGWAE--------------------PFVSRYEPLEAS 609
Query: 600 AMNFREDNKLALCFEVDDTGC-GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+ K L FEVDD+GC GID SKWETVF+SF Q D ST+R HGGTGLGL IVR+L
Sbjct: 610 GGHI---EKFLLWFEVDDSGCAGIDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRSL 666
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGA----SSESKQIYDADFPNTVVVLATVGSMERM 714
V+KMGGEIKVVKK PGTLM+ YL+ + S+ + A P+ V++ G R
Sbjct: 667 VSKMGGEIKVVKKEEPGTLMRFYLMYDSPFEVSTPDNTTHLAQSPSFPVLIGMKGMKLRS 726
Query: 715 IISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKA 774
++ W+ ++++ T +W+ L E +D P S SS++ L
Sbjct: 727 FLTDWVAEQRLDVSSTEDWNSLI----EHMDKELPDSE-------SSKKLL--------- 766
Query: 775 LIDPVYVVVIDIALLDLSSDLWREQLNSLDIF-HRKAMFAWVVNHQTTSPIKTELSREGQ 833
VV+D LL + + + LN+L+ F R A+ +WV+NH T + +K + +G
Sbjct: 767 -------VVLDTRLLPANLEALTDHLNALNNFSKRGALVSWVLNHDTPASVKMRIRDKGY 819
Query: 834 NIVVTKPLYKGKMIQLLETAV---------------RGKILGMQNRISSTTNEG--NGEE 876
+I+ KPLYK K+ LL++ V + ILG++N + G+E
Sbjct: 820 SIMANKPLYKSKLFMLLKSLVGTLPDSFCFIPGLQWKDGILGLRNTSVDYAQDTIWYGKE 879
Query: 877 --------------IRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRER 922
I G +A++ + K C + G SS+R I E
Sbjct: 880 PPKALERLSKRMDLILGEVASHVSQKTH----CGDDED----GFSSTRGSQDISHRAMEL 931
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
+ +P +S L G+ ILLAEDTP+IQ VA +L+K+GATV V DG
Sbjct: 932 KEYTDEEGKEPRAS----------LTGIHILLAEDTPVIQKVAVVLLKKLGATVVAVADG 981
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
AVEA + SL + + P FDLILMDCQMP+MDGY AT EIRK+E
Sbjct: 982 QAAVEAW----------KGSLKDHAVVDEERKP-FDLILMDCQMPRMDGYGATREIRKAE 1030
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
G+ ++PIVALTAHAM++DE++CL VGM+AYLTKPID + M +TIL LTK +
Sbjct: 1031 EGSGS-HVPIVALTAHAMSSDEERCLEVGMDAYLTKPIDCKLMATTILSLTKKI 1083
>gi|224152027|ref|XP_002337182.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222838420|gb|EEE76785.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 318
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/311 (72%), Positives = 262/311 (84%), Gaps = 1/311 (0%)
Query: 360 MGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEAS 419
MGK DERA+KTL+ILISAS+CILVIGC+ ILILTNGVSKEMKLRAELISHLDARR+AEAS
Sbjct: 1 MGKVDERAFKTLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEAS 60
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
NNYKSQFLANMSHELRTPMAA+IGLL+IL DD LTNEQY+ V QI+K S ALLRLLN I
Sbjct: 61 NNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNI 120
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSKVESGK+ LE+ EFDL +ELE L+DMFSVQC NHNVE VLDLSD +P+ VRGD R
Sbjct: 121 LDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSDEMPKLVRGDSAR 180
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
V QIF+NLI+NSIKFT++GHII+RGWCENL+ + N +F D+KK A + KL+Q N+
Sbjct: 181 VVQIFANLISNSIKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKMRCAIKPKLRQHGNH 240
Query: 600 AMN-FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+++NK+ L FE+DDTGCGID SKWE+VFESFEQ DPSTTR HGGTGLGL IVRTL
Sbjct: 241 LKKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTL 300
Query: 659 VNKMGGEIKVV 669
V+K+ I+ +
Sbjct: 301 VSKLHTHIRFL 311
>gi|14530758|emb|CAC42409.1| putative osmosensor histidine Kinase [Populus x canadensis]
Length = 331
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/330 (63%), Positives = 255/330 (77%), Gaps = 6/330 (1%)
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HELRTPMAA+IGLL+IL DD LTNEQY+ V QI+K S ALLRLLN ILDLSKVESGK+
Sbjct: 1 HELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGKLV 60
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE+ EFDL +ELE L+DMFSVQC+NHNVE VLDLSD +P+ +RGD RV QIF+NLI+NS
Sbjct: 61 LEDAEFDLGRELEGLIDMFSVQCTNHNVEAVLDLSDEMPKLLRGDSARVVQIFANLISNS 120
Query: 552 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN-FREDNKLA 610
IKFT++GHII+RGWCENL+ + N +F D+KK A + KL+QQ N+ +++NK+
Sbjct: 121 IKFTTTGHIILRGWCENLNNTYNDTQFHLDQKKMRCAIKPKLRQQGNHLKKACKKENKMI 180
Query: 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVK 670
L FE+DDTGCGID KWE+VFESFEQ DPSTTR HGGTGLGL IVRTLVNKMGGEIKVVK
Sbjct: 181 LWFEIDDTGCGIDPRKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVK 240
Query: 671 KNSPGTLMQLYLLLGASSESKQI-YDADFP--NTVVVLATVGSMERMIISQWLRKKKVST 727
KN PGTLM+LYLLL ++ + DF N VV++A GSM R+I+S WLR+ ++T
Sbjct: 241 KNGPGTLMRLYLLLKTPADGADLPCQVDFSSHNAVVLVALYGSMGRVIMSLWLREIGLTT 300
Query: 728 LETSEWHGLTQILRELLDPISPVSSNGFDA 757
L SEW+ LT++LR+L + NGFD
Sbjct: 301 LGVSEWNELTRVLRKLFH--ARRRENGFDV 328
>gi|167998684|ref|XP_001752048.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
gi|162697146|gb|EDQ83483.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
Length = 1436
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 236/772 (30%), Positives = 388/772 (50%), Gaps = 87/772 (11%)
Query: 2 LAILIGLLTVLTWHFTRVYTTKSLDTLAYGLRYELLQRP--LLRMWNIVNSTAEITAAQV 59
+A+L+GLLTV TW+FT Y ++ +L+ LR E+L+ LL +N+ + A +
Sbjct: 199 VAVLVGLLTVSTWYFTHSYPKSAVASLSESLRLEILENTSELLDEIFSMNTYGSMAIANL 258
Query: 60 KLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHR 119
++ +++ + + +RD W++F + A+ ++ + NG ++R HR
Sbjct: 259 MEKNFLGDDFSRES--------FTRIRDACWSVFKALPAVTSLGVTAMNGLTAVYNRGHR 310
Query: 120 SN-----NTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPIT 174
+ F +YS+ GTS ++Y+E + +T
Sbjct: 311 NEIEGFRGNFCLYSN----ETGTS------------------------PVYYKEFVSEVT 342
Query: 175 GEKIGKASPIPPDDLINIA---------GISQVPDGVASWHVAVSKFTNSPLLSAALPVW 225
G+ +G +P ++ + A +S D + +W + S + + +
Sbjct: 343 GDPLG----LPSVEIFDSALHETPWFKEAVSHPIDNL-TWTIGRSLISKQAFVQCGIAKQ 397
Query: 226 DPTTSNKSIV----AVVGVTTALSSVGQLMKELVEVH-------SGHIYLTSQEGYLLAT 274
+ ++V + + + +SS+ EL E H G +++ + G LL +
Sbjct: 398 AKASKEIALVHSSLSAIAINDFISSL-----ELKENHRSDVGSSGGSVFIADEHGTLLFS 452
Query: 275 STNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQY 334
S + ++ T N V+ G +LQS+ G + HV + L K+Y
Sbjct: 453 SEPTVCVLSNRTACETTPL--DRNSVLNDGKLFLQSQVGLANLAMNETHVADVYLKGKRY 510
Query: 335 YMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTN 394
+D++ + + + + V++IPR G D T I L S+ ++ IGC I +L
Sbjct: 511 SVDSWPYSFRTVKLSVVVMIPRHSFWGPMDYYTRITWISLPLLSIGVVFIGCSLIYLLVE 570
Query: 395 GVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
V E KLRAE+ +A+ +AEAS + K+ FL++MSHELRTPMA IIGLL++L ++ L
Sbjct: 571 QVQAEEKLRAEIQRQSEAKCRAEASRDAKTNFLSSMSHELRTPMACIIGLLDMLLMEN-L 629
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
T E +V QI + + +L+ LLN LD++KVESGK+ LE EF+L+ EL L+D+FSVQC
Sbjct: 630 TVEHEGSVRQIHRCATSLVSLLNSALDIAKVESGKLVLEKAEFNLEAELTALIDVFSVQC 689
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
N N+ LDL++++P V GD RV QIF+NLI NSIKFTS G I++RG N ++S
Sbjct: 690 DNKNLFISLDLAESVPAYVIGDSARVMQIFTNLIGNSIKFTSKGRIVVRGRVSNSESSSG 749
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
+ + R+ F + ++A + + L FE+DDTG GI+ + E VFE+F
Sbjct: 750 SGK--GHRRSFSPFSLERCTEEATVP------DTVVLVFEIDDTGPGIEPALREKVFENF 801
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI- 693
QG+ STTR HGGTGLGL IVR+LV MGG I++V+K G + Q + S + +
Sbjct: 802 VQGNASTTRIHGGTGLGLGIVRSLVQLMGGSIRIVEKTGAGAVFQFSICFQRSLTPETLP 861
Query: 694 --YDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILREL 743
+ VV+ + R + S+W+ + + + W + LR L
Sbjct: 862 YKLPPFYHEAEVVIGVPDADTRAVASEWIVRHGLMVHQVETWEQILLHLRAL 913
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 157/343 (45%), Gaps = 74/343 (21%)
Query: 794 DLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853
D+ + Q+ L +K WV+ T PIK L + +V +PL+ ++ ++ +
Sbjct: 1031 DMNQRQIRDL---QQKLSVVWVMASNTHEPIKAALRAVRSSFIVRRPLHAARLKEIFQLV 1087
Query: 854 VRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRRED 913
+ + SS +E E + S NY K Q++ S + + SS R
Sbjct: 1088 AQNS-----DAFSSRHSESAPEVLASSTINY--VKQQEWDDPYACDSEVPLAQESSSRAS 1140
Query: 914 LI-----HTMFRERH------------------QIGSSRR-DQPCSS------------- 936
I T+ RH +I SSR+ DQP S
Sbjct: 1141 TIGVTHGATVRNVRHRPTAAKSVPQEEISYSEMEIRSSRQTDQPSQSMVTPSKHMKKTVR 1200
Query: 937 -------SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA- 988
S +N + LE L IL+AEDTPL++ +A +L ++GA +G + +EA
Sbjct: 1201 TTTHVNGSKKMNNVPKPLENLEILVAEDTPLLRKLAAAMLRRLGAVTYEASNGQEVLEAV 1260
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
+NRM +S F+ ILMDCQMP MDGYEA IR+ E + R
Sbjct: 1261 MNRMQCGQSP------------------FNCILMDCQMPVMDGYEACKAIREFEKDVTWR 1302
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
IVALTA+AM +DE+KCL GM+A+LTKPID E MV ILR
Sbjct: 1303 T-SIVALTANAMASDEQKCLKAGMDAFLTKPIDQEYMVQVILR 1344
>gi|297828473|ref|XP_002882119.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297327958|gb|EFH58378.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1125
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 282/1028 (27%), Positives = 468/1028 (45%), Gaps = 185/1028 (17%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASW-HVAVSKFTNSPLLSAALP 223
WY + +D +TG G A+ P DL + W A S + L +L
Sbjct: 155 WYTQNIDQLTGRLNGNATKSQPLDLTH-----------TDWFQAAQSNNYTTTFLGTSLG 203
Query: 224 VWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEV------HSGHIYLTSQEGYLLAT--S 275
D T +S+V++ L S+G +K L +V H +Y+ +++G +L S
Sbjct: 204 EKDNETLIQSVVSLYN-KKGLVSLGFPVKTLTDVLNSLNLHGEELYMWTKDGTVLVREGS 262
Query: 276 TNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQ--SEYGSKVPPGHVIHVQNAKLGHKQ 333
NA ++ + + DS + W Q SE S + G+ + ++ +
Sbjct: 263 LNASFFISNGS---ICFGRDSK-------SVWSQCISENCSTI--GYKVEIKRS-----T 305
Query: 334 YYMDTFFLNLKRLPIVGVIIIPRE----YIMGKADERAYKTLIILISASVCILVIG--CI 387
Y L + +P+ ++ P E I +AD+ Y+ ++++I L +G
Sbjct: 306 YQAFCSVLEVSGVPLRYTLMFPNEGGATRIKHQADKAMYQLIVVVI-----FLGLGWPVW 360
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+ + +EM++RA LI+ ++A ++AE + KSQ AN SH++R +AA+ GL++I
Sbjct: 361 FVWFMMQATRREMRMRAMLINQMEATQQAERKSMNKSQAFANASHDIRGALAAMKGLIDI 420
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
+ + + ++ +T+ Q+ S L+ LLN +LD+SK+ESGKM+L +F+L K LE++
Sbjct: 421 CRDEVKPGSDIDTTLKQVNACSKDLVVLLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVT 480
Query: 508 DMFSVQCSNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
D + V+ VLD D NVRGD G++ QI +NL++N++KFT GHI+IR
Sbjct: 481 DFYHPVAMKKGVDVVLDSHDGSIFKFSNVRGDSGKLKQILNNLVSNAVKFTVDGHILIRA 540
Query: 565 WCENLDTSKNT--AEFPTDRKKFGRAFRTKLKQQANN-----AMNFRED-NKLALCFEVD 616
W + + + A P KF ++ K K Q++N + + R + N + FEVD
Sbjct: 541 WAQRPGSKSSVILASDPQGVSKFLKSMLCKNKDQSSNYEAEISNSIRNNANTMEFVFEVD 600
Query: 617 DTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSP 674
DTG GI ++VFE++ Q T + GTGLGL IV++LV MGGEI++ K
Sbjct: 601 DTGKGIPMEMRKSVFENYVQVR-ETAQGQQGTGLGLGIVQSLVRLMGGEIRITDKAMGEK 659
Query: 675 GTLMQLYLLLGASSESKQIYD----------ADFPNTVVVLATV-----GSM-------- 711
GT Q +LL + ES + D D+ +T + T+ GSM
Sbjct: 660 GTCFQFNVLL-TTLESPPVSDMKVRPDIQAGGDYISTPDLGLTINTSLGGSMNIRNLSPR 718
Query: 712 ------------------------ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPI 747
R + ++++ + +W L+ L L
Sbjct: 719 FNNCLSSSPKQECSRVVLLLKNEERRRVTEKYIKNLGIKVTMVEKWEHLSYALERLFG-F 777
Query: 748 SPVSSNG-----FDAPYSSREPL-------------KAEMTNIKALIDPVYVVVIDIALL 789
SP SS G P S PL K T+ A++ ++VID
Sbjct: 778 SPQSSMGRAESSLSCPSSRELPLIGMDGIDSRSQLPKRRSTSFSAVV----LLVIDAKTG 833
Query: 790 DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPI------KTELSREGQNIVVTKPLYK 843
L L+++ F + H T + T +S G +I ++PL+
Sbjct: 834 PL-----------LELYDIVKQFRKGLPHGITCKVVWLNESSTRVSERG-DISCSRPLHG 881
Query: 844 GKMIQLLET--AVRGKILGMQNRISSTTNEGNGEE-IRGSIANYSASKHQKFRK---CSF 897
+++++L+ G +L T E E +R S + KH KF++ CS
Sbjct: 882 SRLMEVLKMLPEFGGTVL------KETPTELQRESLLRHSFVAERSPKH-KFQEEGPCSM 934
Query: 898 ---EFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILL 954
+ ++S E I ++ R IG++ ++ S + L G R+L+
Sbjct: 935 FNKKLGKTIMAPTASESETRIKSVSSGRKPIGNAEDEE----GTSKPSDDEFLRGKRVLV 990
Query: 955 AEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT 1014
+D L + VA L+K+G VS V EAL R++ +++ Q S ++ P
Sbjct: 991 VDDNFLTRKVATGKLKKMG--VSEVLQCDSGKEAL-RLVTEGLTQKEE--QCSVNKLP-- 1043
Query: 1015 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE-KKCLGVGMN 1073
FD I MDCQMP+MDGYEAT EIRK E +G R IP++A++ H + E ++ + GM+
Sbjct: 1044 --FDYIFMDCQMPEMDGYEATREIRKVEKSYGVR-IPVIAVSGHDPGSREARETVQAGMD 1100
Query: 1074 AYLTKPID 1081
A+L K ++
Sbjct: 1101 AFLDKSLN 1108
>gi|242094944|ref|XP_002437962.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
gi|241916185|gb|EER89329.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
Length = 1035
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 239/826 (28%), Positives = 374/826 (45%), Gaps = 133/826 (16%)
Query: 331 HKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGC-ICI 389
H +Y L++ + V + ++ R + G + +I+L A + + V+ C +
Sbjct: 270 HNRYKAACAMLDVSGVQ-VALRLVLRPPVQGHMLQALCVAVIVLACALLVLAVVSCAFAV 328
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L ++EM L A+L+ +A R+AE + KS A+ SH++R+ +AAI GL+++ +
Sbjct: 329 RALRRASAREMALNADLVRQKEALRQAERKSMNKSNAFASASHDIRSALAAIAGLVDMSR 388
Query: 450 SDDQ-------LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
+ Q + N VC K L +LN ILD SKVESGKM+LE EF +
Sbjct: 389 PEAQSLPAPGIVENLDQMGVCTNK-----LFDILNSILDTSKVESGKMQLEEAEFSMSDV 443
Query: 503 LEELVDMFSVQCSNHNVETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGH 559
L+E VDM +V VE + D D ++ R V GD R+ QI NL+ N++KFT GH
Sbjct: 444 LQESVDMANVTGVRRGVEVIWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTHEGH 503
Query: 560 IIIRGWCENLDTSKNT---AEFPTDRKKFG----RAFRTKLKQQANNAMNFREDNKLALC 612
+++RGW + F R+ G R FR + + + N +
Sbjct: 504 VLLRGWATRPIAGSGVGTPSRFAHPRRSAGGSLARLFRGRAEDPDGQDHVQNDPNLVEFY 563
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672
FEV DTG GI + K +VFE++ Q GGTGLGL IV++ V MGGEI +K
Sbjct: 564 FEVVDTGIGIPKEKRMSVFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEI-CIKDK 618
Query: 673 SP---GTLMQLYLLLGASSESKQIYD--------------------------ADFPNTVV 703
P GT +LL SE +Q + + F
Sbjct: 619 EPGERGTCFAFNVLL-KMSEVQQTHQDIEEGPSVPLGTLNGSNYRASAFQEASSFKGVHC 677
Query: 704 VLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD---PISPVSSNGFDAPYS 760
VL GS R I+ W+ V + ++ L ++ + G D +S
Sbjct: 678 VLYVHGSETRRILQTWMESMGVKVWLVRQAEFISATLEKVQSSSVATAAADCGGGDRCFS 737
Query: 761 SRE----------PLKAEMTNIKALIDPVYVVVIDI---ALLDLSSDLWREQLNSLDIFH 807
S+E P +A + I + I ++VID+ AL ++ D+ + L
Sbjct: 738 SKEMVNQLRNNTGPKRASLGGIPSGI----LLVIDVSGGALEEIYQDMAK-----LARTK 788
Query: 808 RKAMFAWVVNHQTTSPIKTELSR---EGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNR 864
++A V+ +P EL R +G +V+ KP++ ++ LL T + +Q
Sbjct: 789 QQAPCKVVLLEDIKTP-SNELRRLKEQGCYLVLRKPVHGSRLFTLLMT-----LRDLQAS 842
Query: 865 ISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQ 924
+ + G EI G + S+ Q D++ +E
Sbjct: 843 DAHAQSSQVGPEIAG-----NNSQQQGL-------------------PDVVVPCVQE--- 875
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
++ + PC + L G++ILLAEDT ++Q + KIL ++GATV+V DG
Sbjct: 876 -AAASAEAPCLVQKQKPEDDKPLAGMQILLAEDTFVLQTIQRKILNQLGATVTVAVDGSV 934
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYEATIEIRKSES 1043
AV L +++L Q + S P + +I MDCQMP MDGYEAT IR+ E
Sbjct: 935 AVNLL----------KQALEQANVSGEEIVPLPYHVIFMDCQMPNMDGYEATKLIREEEQ 984
Query: 1044 EHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+G + PI+ALTAH D +K + GM+ +LTKPI +++V +
Sbjct: 985 RYGI-HTPIIALTAHDTQEDLQKAIDAGMDLHLTKPILGKKIVEAV 1029
>gi|302764822|ref|XP_002965832.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
gi|300166646|gb|EFJ33252.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
Length = 229
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 169/258 (65%), Gaps = 30/258 (11%)
Query: 427 LANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVE 486
+ + SHELRTPMA IIG+L+IL S D LT EQ ++V QI++ + LL ++N +LD+SKVE
Sbjct: 1 MTSFSHELRTPMAGIIGMLDIL-SCDTLTPEQETSVGQIRRCATGLLSMVNNVLDISKVE 59
Query: 487 SGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSN 546
+GKM+L+ F+L ELE LVDMF+ Q +V+ LDLSD IP+ ++GD R+ QIFSN
Sbjct: 60 AGKMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSN 119
Query: 547 LINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 606
L++NS+KFT +GHI+IRGW + E +D F
Sbjct: 120 LLSNSMKFTENGHIVIRGWAD------EKPEISSDGPSF--------------------- 152
Query: 607 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
+ L FEVDDTGCGI ETVF+SF Q D S+TR HGG+GLGL IVR+LV KMGGE+
Sbjct: 153 --INLIFEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQKMGGEV 210
Query: 667 KVVKKNSPGTLMQLYLLL 684
+V+ K PGTL++ +++
Sbjct: 211 QVICKQGPGTLIRFNIVM 228
>gi|302802654|ref|XP_002983081.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
gi|300149234|gb|EFJ15890.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
Length = 229
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 169/258 (65%), Gaps = 30/258 (11%)
Query: 427 LANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVE 486
+ + SHELRTPMA IIG+L+IL S D LT EQ ++V QI++ + LL ++N +LD+SKVE
Sbjct: 1 MTSFSHELRTPMAGIIGMLDIL-SCDTLTPEQETSVGQIRRCATGLLSMVNNVLDISKVE 59
Query: 487 SGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSN 546
+GKM+L+ F+L ELE LVDMF+ Q +V+ LDLSD IP+ ++GD R+ QIFSN
Sbjct: 60 AGKMDLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIPQALKGDACRIRQIFSN 119
Query: 547 LINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 606
L++NS+KFT +GHI+IRGW + E +D F
Sbjct: 120 LLSNSMKFTENGHIVIRGWAD------EKPEISSDGPSF--------------------- 152
Query: 607 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
+ + FEVDDTGCGI ETVF+SF Q D S+TR HGG+GLGL IVR+LV KMGGE+
Sbjct: 153 --INVIFEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQKMGGEV 210
Query: 667 KVVKKNSPGTLMQLYLLL 684
+V+ K PGTL++ +++
Sbjct: 211 QVICKQGPGTLIRFNIVM 228
>gi|168010744|ref|XP_001758064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690941|gb|EDQ77306.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 193/317 (60%), Gaps = 13/317 (4%)
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHELRTPMA IIGLL++L S+ +L +E S+V QI + + +L+ +LN LD++KVESGK
Sbjct: 5 VSHELRTPMACIIGLLDMLLSE-KLLDEIASSVRQIHRCATSLIAILNSALDIAKVESGK 63
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ LE EFDL+ EL L+D+FSVQC N + L L+DN+P+NV GD RV Q+F+NLI
Sbjct: 64 LVLEKAEFDLEAELTALIDVFSVQCDNKGLFISLQLADNVPKNVVGDSARVMQVFTNLIG 123
Query: 550 NSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKL 609
NSIKFTSSG I + ++ N + R+ F +F + + + +++
Sbjct: 124 NSIKFTSSGRISVSARLATVEDGVNPSR--VHRRSFS-SFSLDMFTELPTS------DEV 174
Query: 610 ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVV 669
+ FEVDDTG GI+ + E VFE+F QGD STTR HGGTGLGL IV++LV+ MGG I++V
Sbjct: 175 IILFEVDDTGPGIEPALRERVFENFVQGDASTTRMHGGTGLGLGIVKSLVHIMGGNIRIV 234
Query: 670 KKNSPGTLMQLYLLLGASSESKQ---IYDADFPNTVVVLATVGSMERMIISQWLRKKKVS 726
+K PG++ Q + S + ++ I + VVL + R + + W++ +
Sbjct: 235 EKAGPGSVFQFTICFQRSLKPERMPYILPSSLQGAEVVLGIPNADCRAVAAHWVKTWGLK 294
Query: 727 TLETSEWHGLTQILREL 743
E W + +R L
Sbjct: 295 AHEVGSWEEILIHMRTL 311
>gi|449454135|ref|XP_004144811.1| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]
Length = 1038
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 224/815 (27%), Positives = 369/815 (45%), Gaps = 144/815 (17%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
I + I+ G +EM L A+LI ++A ++AE + KS SH++R +A IIGL+E
Sbjct: 250 IFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASHDIRASLAGIIGLIE 309
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
I ++ +E ++ Q+ + LL +LN ILD SK+E+GK++LE EF L + LE++
Sbjct: 310 ICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQLEEEEFHLGQLLEDV 369
Query: 507 VDMFSVQCSNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
VD++ ++ VLD D V+GD G++ Q+ NL++N++KFTS G + +R
Sbjct: 370 VDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLSNAVKFTSEGQVTVR 429
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAF-------RTKLKQQA-NNAMNFREDNKLALCFEV 615
W +NL T +N + + F T +QQA +N +N + FE+
Sbjct: 430 AWVKNLPTMQNNMISSNHNDEILKYFSFLVCNTSTFQEQQAMDNGVNLNP-GCMEFTFEI 488
Query: 616 DDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NS 673
DDTG GI + K + VFE++ Q T GGTGLGL IV++LV MGG+I ++ K
Sbjct: 489 DDTGKGIPKEKRKLVFENYVQ-VKETAFGQGGTGLGLGIVQSLVRLMGGDIAILDKEIGE 547
Query: 674 PGTLMQLYLLL--------------GASSESKQIYDADFPNTV----------------- 702
GT + +LL S SK + A P T
Sbjct: 548 KGTCFRFSVLLLVLEDNVNTGDDTRQPSPTSKLTFWA--PTTSLHSPRAIRTTSSKTETS 605
Query: 703 -VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSN-----GFD 756
V+L R+I ++L V L +W L L+++LD S N G
Sbjct: 606 RVILLIQNDQRRLICKKFLESLGVKVLAMKQWEQLLTTLQKILDKQSHSMHNSRGRSGTS 665
Query: 757 APY---------SSREPLKAEMTNIKALIDPVYVVVID------------IALLDLSSDL 795
+P SR L +++ + Y + + + ++D +
Sbjct: 666 SPSDCLSKSTSGDSRNGLNMHISSGARKDETNYFLSVFKKTNLRGGNSFILIVIDARAGP 725
Query: 796 WREQLNSLDIFHRK-----AMFAWVVNHQTT-----SPIKTELSREGQNIVVTKPLYKGK 845
++E N + F R+ W++ +Q + I + + + ++ +++P + +
Sbjct: 726 FKEICNMVANFRRRLQGSHCKVVWLLENQMSRISNDKGIDSNIYKS-NDVFISRPFHGSR 784
Query: 846 MIQL----------LETA----------VRGKILGMQNRISSTTNEGNGEEIRGSIANYS 885
+ ++ LET V + + S + EGN RG I
Sbjct: 785 LYEVIRLLPEFGGTLETGESSTSYWSGNVSKDLSSSPYQCQSKSKEGNSPIFRGHI---- 840
Query: 886 ASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNS------ 939
+ +K + + P S+ + IH+ IGS R P S
Sbjct: 841 ---ETRVQKETTSSNGTSPKNLSTNQ---IHSC------IGSKTRSSPIVEQKSLHQEIR 888
Query: 940 -----SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
S+ ++ L G ++L+AED ++Q +A LE++GAT + +G +A+E + L
Sbjct: 889 EEKYKHSSGEKPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGKEALELVCNGLG 948
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
+ G+ + P +D ILMDC+MP MDGYEAT EIRK E + +IPI+A
Sbjct: 949 NQRK------HGASNTLP----YDYILMDCEMPIMDGYEATREIRKVERYYNT-HIPIIA 997
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
LTAH + K + GM+ +L KP+ E+++ I
Sbjct: 998 LTAHTTGEEAGKTIEAGMDVHLGKPLRKEKLLEAI 1032
>gi|449490917|ref|XP_004158748.1| PREDICTED: LOW QUALITY PROTEIN: histidine kinase CKI1-like [Cucumis
sativus]
Length = 1001
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 224/815 (27%), Positives = 367/815 (45%), Gaps = 144/815 (17%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
I + I+ G +EM L A+LI ++A ++AE + KS SH++R +A IIGL+E
Sbjct: 197 IFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASHDIRASLAGIIGLIE 256
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
I ++ +E ++ Q+ + LL +LN ILD SK+E+GK++LE EF L + LE++
Sbjct: 257 ICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQLEEEEFHLGQLLEDV 316
Query: 507 VDMFSVQCSNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
VD++ ++ VLD D V+GD G++ Q+ NL++N++KFTS G + +R
Sbjct: 317 VDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLSNAVKFTSEGQVTVR 376
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAF-------RTKLKQQA-NNAMNFREDNKLALCFEV 615
W +NL T +N + + F T +QQA +N +N + FE+
Sbjct: 377 AWVKNLPTMQNNMISSNHNDEILKYFSFLVCNTSTFQEQQAMDNGVNLNP-GCMEFTFEI 435
Query: 616 DDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NS 673
DDTG GI + K + VFE++ Q T GGTGLGL IV++LV MGG+I ++ K
Sbjct: 436 DDTGKGIPKEKRKLVFENYVQ-VKETAFGQGGTGLGLGIVQSLVRLMGGDIAILDKEIGE 494
Query: 674 PGTLMQLYLLL--------------GASSESKQIYDADFPNTV----------------- 702
GT + +LL S SK + A P T
Sbjct: 495 KGTCFRFSVLLLVLEDNVNTGDDTRQPSPTSKLTFWA--PTTSLHSPRAIRTTSSKTETS 552
Query: 703 -VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSN-----GFD 756
V+L R+I ++L V L +W L L+++LD S N G
Sbjct: 553 RVILLIQNDQRRLICKKFLESLGVKVLAMKQWEQLLTTLQKILDKQSHSMHNSRGRSGTS 612
Query: 757 APY---------SSREPLKAEMTNIKALIDPVYVVVID------------IALLDLSSDL 795
+P SR L +++ + Y + + + ++D +
Sbjct: 613 SPSDCLSKSTSGDSRNGLNMHISSGARKDETNYFLSVFKKTNLRGGNSFILIVIDARAGP 672
Query: 796 WREQLNSLDIFHRK-----AMFAWVVNHQTT-----SPIKTELSREGQNIVVTKPLYKGK 845
++E N + F R+ W++ +Q + I + + + ++ +++P + +
Sbjct: 673 FKEICNMVANFRRRLQGSHCKVVWLLENQMSRISNDKGIDSNIYKS-NDVFISRPFHGSR 731
Query: 846 MIQL----------LETA----------VRGKILGMQNRISSTTNEGNGEEIRGSIANYS 885
+ ++ LET V + + S + EGN RG I
Sbjct: 732 LYEVIRLLPEFGGTLETGESSTSYWSGNVSKDLSSSPYQCQSKSKEGNSPIFRGHI---- 787
Query: 886 ASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNS------ 939
+ +K + + P S+ + IH+ IGS R P S
Sbjct: 788 ---ETRVQKETTSSNGTSPKNLSTNQ---IHSC------IGSKTRSSPIVEQKSLHQEIR 835
Query: 940 -----SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
S+ ++ L G ++L+AED ++Q +A LE++GAT + +G +A+E +
Sbjct: 836 EEKYKHSSGEKPLSGKKVLVAEDNLVLQKLARLNLERLGATTEICENGKEALELVC---- 891
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
L Q +T +D ILMDC+MP MDGYEAT EIRK E + +IPI+A
Sbjct: 892 ------NGLXQSKEHGASNTLPYDYILMDCEMPIMDGYEATREIRKVERYYNT-HIPIIA 944
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
LTAH + K + GM+ +L KP+ E+++ I
Sbjct: 945 LTAHTTGEEAGKTIEAGMDVHLGKPLRKEKLLEAI 979
>gi|413942530|gb|AFW75179.1| hypothetical protein ZEAMMB73_171957 [Zea mays]
Length = 1059
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 218/769 (28%), Positives = 357/769 (46%), Gaps = 101/769 (13%)
Query: 378 SVCILVIGCICILILTNGVSKEMKLRA-------ELISHLDARRKAEA--SNNYKSQFLA 428
++C+ V+ C+L+L VS + +RA E+ ++D R+ EA +KS A
Sbjct: 337 ALCVSVVFLACVLVLAAAVSCALAVRALRWAAAREMALNVDLARQKEALRQAEFKSNAFA 396
Query: 429 NMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESG 488
+ SH++R+ ++AI GL+++ + + Q + Q+ + L +LN +LD SKV +G
Sbjct: 397 SASHDIRSALSAIAGLVDMSRPEVQSVPGIMENLDQMGVCTNKLFDILNSVLDTSKVGAG 456
Query: 489 KMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD-NIPR--NVRGDPGRVFQIFS 545
KM+LE EF + L+E VDM +V VE V D D ++ R V GD R+ QI
Sbjct: 457 KMQLEEAEFTMADVLQESVDMANVTGVQRGVEVVWDPCDFSVLRCTAVIGDSKRLKQILD 516
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNT---AEFPTDRKKFGRAFRTKLKQQANNAM- 601
NL+ N++KFT GH+++R W N + F R G +F + Q + +
Sbjct: 517 NLLGNALKFTDEGHVVLRCWATRPIVGSNVRAPSRFMHPRHASGGSFGCFFRAQEDPSHQ 576
Query: 602 -NFRED-NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + D N + FEV DTG GI + +VFE++ Q GGTGLGL IV++ V
Sbjct: 577 DHLQNDPNLVEFYFEVVDTGIGIPKENRMSVFENYVQ----VNNGQGGTGLGLGIVQSFV 632
Query: 660 NKMGGEIKVVKKNSP---GTLMQLYLLLGASSESKQIYDAD------------------- 697
MGGEI +K P GT +LL SE +Q D +
Sbjct: 633 RLMGGEIS-IKDKEPGERGTCFAFNVLLKI-SEMQQPQDIEEGPSVPSGTLNLASAFQEA 690
Query: 698 --FPNTVVVLATVGSMERMIISQWLRK--KKVSTLETSEWHGLT-QILRELLDPISPVSS 752
F +L G R I+ W+ KV + +++ G T + +R I +
Sbjct: 691 NNFKGVHCILYVRGYETRRIMQTWMESIGVKVWLVPQAKFIGSTLEKVRSNSTTIIAMDY 750
Query: 753 NGFDAPYSSREPLKA--EMTNIKAL----IDPVYVVVIDIALLDLSSDLWREQLNSLDIF 806
N D +S +E + T I+ + I ++VID++ + + ++++E I
Sbjct: 751 NNADRCFSFKEKVNQLRNNTGIRRVSLGGIPSGILIVIDVSGGE-TEEIFQEMAKLARIK 809
Query: 807 HRK-AMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRI 865
H+ + + +T S +L G ++V+ KP++ ++ LL T ++ Q +
Sbjct: 810 HQAPCKVVLLKDIKTPSNDLRKLKDLGCDLVLRKPVHGSRLFTLLMTLRDLQVSNAQAQS 869
Query: 866 SSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQI 925
S G I G +S++ L + +
Sbjct: 870 SHVVGPG----IAG----------------------------NSQQHGLPDVVVPCVQET 897
Query: 926 GSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQA 985
+S C + + L G++ILLAEDT ++Q + K+L ++GA V+V +G A
Sbjct: 898 NASTELASCLAQEQKPEDDKPLSGMQILLAEDTLVLQTIQKKVLNQLGALVTVAQNGAVA 957
Query: 986 VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH 1045
V L L ++ + ++ + + +ILMDCQMP+MDGYEAT IR+ E +
Sbjct: 958 VNLLREALEQANASKEDIV---------SLPYHVILMDCQMPEMDGYEATKLIREEEQRY 1008
Query: 1046 GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
G + PI+ALTAH M D +K GM+ +LTKPI +++V I + K
Sbjct: 1009 GI-HTPIIALTAHDMEEDLQKAFDAGMDLHLTKPILQKKIVEAICSVYK 1056
>gi|413932658|gb|AFW67209.1| hypothetical protein ZEAMMB73_026273 [Zea mays]
Length = 737
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 221/748 (29%), Positives = 338/748 (45%), Gaps = 107/748 (14%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L +L +A R+AE + KS A+ SH++R+ ++AI GL+++ + + Q
Sbjct: 42 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAI 101
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ Q+ + L +LN ILD SKVESGKM+LE EF + L+E VDM V
Sbjct: 102 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 161
Query: 519 VETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
VE V D D ++ R V GD R+ QI NL+ N++KFT GH+++R W N
Sbjct: 162 VEVVWDPCDFSVLRCATVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPIIGSNV 221
Query: 576 ---AEFPTDRKK----FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ F R G FR + K + + N + FEV DTG GI Q K
Sbjct: 222 RAPSRFVHPRHGGGSFLGCLFRAR-KGPGDQDHVQNDPNLVEFYFEVVDTGIGIPQEKRM 280
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLLLGA 686
+VFE++ Q GGTGLGL IV++ V MGGEI + K GT +LL
Sbjct: 281 SVFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLKI 336
Query: 687 S-----------------SESKQIYDA-------DFPNTVVVLATVGSMERMIISQWLR- 721
S + ++ IY A +F VL G R I+ W+
Sbjct: 337 SEVQQPQDIEEGPSVPLDTLNRSIYIASAFQEASNFKGVHCVLYVHGYETRRILKTWMES 396
Query: 722 -KKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSRE----------PLKAEM 769
+ KV + +E+ G T + ++ + D +SS+E P +A +
Sbjct: 397 IEVKVWLVPQAEFIGSTLEKVQSNSTATATAECGSADRCFSSKEMVNLLRNNSSPRRAIL 456
Query: 770 TNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRK-AMFAWVVNHQTTSPIKTEL 828
I + I +VVID++ + + ++ +E I H+ + + +T S L
Sbjct: 457 GGIPSGI----LVVIDVSGGE-TEEICQEMAKLARIKHQAPCKVVLLEDIKTPSNDLRRL 511
Query: 829 SREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASK 888
G ++V+ KP++ + LL T ++L Q + S G EI G
Sbjct: 512 KDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQAQSSHV-----GPEIAG--------- 557
Query: 889 HQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILE 948
+ +++DL + +S + + L
Sbjct: 558 -------------------NRQQQDLPDVVVPCVEDTAASTEASCLAQEQQKPGDDKPLA 598
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G+RILLAED ++Q + KI+ ++GA V+V +G AV L R +L Q +
Sbjct: 599 GMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGAMAVNLL----------REALEQANA 648
Query: 1009 SETP--DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
SE P + +I MDCQMP MDGYEAT IR+ E +G + PI+ALTAH M D +K
Sbjct: 649 SEEDIVSLP-YHVIFMDCQMPGMDGYEATKLIREEEQRYGI-HTPIIALTAHDMEEDLQK 706
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+ GM+ +L KPI +++V + + K
Sbjct: 707 AIDAGMDLHLAKPISRKKIVDAVRSVCK 734
>gi|413932651|gb|AFW67202.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 990
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 224/752 (29%), Positives = 342/752 (45%), Gaps = 118/752 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L +L +A R+AE + KS A+ SH++R+ ++AI GL+++ + + Q
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ Q+ + L +LN ILD SKVESGKM+LE EF + L+E VDM V
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 519 VETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
VE V D D ++ R V GD R+ QI NL+ N++KFT GH+++R W T N
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 576 ---AEF--PTDRKKFGRAFRTKLKQQANNAMNFRED-NKLALCFEVDDTGCGIDQSKWET 629
+ F P + +++ + + + D N + FEV DTG GI Q K +
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQDHVQNDPNLVEFYFEVVDTGIGIPQEKKMS 282
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLLLGAS 687
VFE++ Q GGTGLGL IV++ V MGGEI + K GT +LL
Sbjct: 283 VFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRI- 337
Query: 688 SESKQIYD-------------------------ADFPNTVVVLATVGSMERMIISQWLR- 721
SE +Q D ++F VL G R I+ W+
Sbjct: 338 SEVQQPQDIEEGPSVPLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRILQTWMES 397
Query: 722 -KKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSRE----------PLKAEM 769
+ KV + +E+ G T + ++ + D +SS+E P +A +
Sbjct: 398 IEVKVWLVPQAEFIGSTLEKVQSNSTATATAECGSADRCFSSKEMVNLLRNNSSPRRAIL 457
Query: 770 TNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNH-QTTSPIKTEL 828
I + I +VVID++ + + ++ +E I H+ ++ +T S L
Sbjct: 458 GGIPSGI----LVVIDVSGGE-TEEICQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRL 512
Query: 829 SREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASK 888
G ++V+ KP++ + LL T ++L Q + S G EI G
Sbjct: 513 KDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQAQSSHV-----GPEIAG--------- 558
Query: 889 HQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQK---- 944
+S+++DL + D S+ S QK
Sbjct: 559 -------------------NSQQQDLPDVVV-------PCVEDTVASTEASCLAQKPGDD 592
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+ L G+RILLAED ++Q + KI+ ++GA V+V +G AV L R +L
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLL----------REALE 642
Query: 1005 QGSPSETP--DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
Q + SE P + +I MDCQMP MDGYEAT IR+ E +G + PI+ALTAH M
Sbjct: 643 QANASEEDIVSLP-YHVIFMDCQMPGMDGYEATKLIREEEQRYGI-HAPIIALTAHDMEE 700
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D +K + GM+ +L KPI +++V + K
Sbjct: 701 DLQKAIDAGMDLHLAKPISRKKIVDAVRSFCK 732
>gi|413932650|gb|AFW67201.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 1021
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 224/752 (29%), Positives = 342/752 (45%), Gaps = 118/752 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L +L +A R+AE + KS A+ SH++R+ ++AI GL+++ + + Q
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ Q+ + L +LN ILD SKVESGKM+LE EF + L+E VDM V
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 519 VETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
VE V D D ++ R V GD R+ QI NL+ N++KFT GH+++R W T N
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 576 ---AEF--PTDRKKFGRAFRTKLKQQANNAMNFRED-NKLALCFEVDDTGCGIDQSKWET 629
+ F P + +++ + + + D N + FEV DTG GI Q K +
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQDHVQNDPNLVEFYFEVVDTGIGIPQEKKMS 282
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLLLGAS 687
VFE++ Q GGTGLGL IV++ V MGGEI + K GT +LL
Sbjct: 283 VFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRI- 337
Query: 688 SESKQIYD-------------------------ADFPNTVVVLATVGSMERMIISQWLR- 721
SE +Q D ++F VL G R I+ W+
Sbjct: 338 SEVQQPQDIEEGPSVPLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRILQTWMES 397
Query: 722 -KKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSRE----------PLKAEM 769
+ KV + +E+ G T + ++ + D +SS+E P +A +
Sbjct: 398 IEVKVWLVPQAEFIGSTLEKVQSNSTATATAECGSADRCFSSKEMVNLLRNNSSPRRAIL 457
Query: 770 TNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNH-QTTSPIKTEL 828
I + I +VVID++ + + ++ +E I H+ ++ +T S L
Sbjct: 458 GGIPSGI----LVVIDVSGGE-TEEICQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRL 512
Query: 829 SREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASK 888
G ++V+ KP++ + LL T ++L Q + S G EI G
Sbjct: 513 KDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQAQSSHV-----GPEIAG--------- 558
Query: 889 HQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQK---- 944
+S+++DL + D S+ S QK
Sbjct: 559 -------------------NSQQQDLPDVVV-------PCVEDTVASTEASCLAQKPGDD 592
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+ L G+RILLAED ++Q + KI+ ++GA V+V +G AV L R +L
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLL----------REALE 642
Query: 1005 QGSPSETP--DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
Q + SE P + +I MDCQMP MDGYEAT IR+ E +G + PI+ALTAH M
Sbjct: 643 QANASEEDIVSLP-YHVIFMDCQMPGMDGYEATKLIREEEQRYGI-HAPIIALTAHDMEE 700
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D +K + GM+ +L KPI +++V + K
Sbjct: 701 DLQKAIDAGMDLHLAKPISRKKIVDAVRSFCK 732
>gi|413932654|gb|AFW67205.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 875
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 225/753 (29%), Positives = 343/753 (45%), Gaps = 120/753 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L +L +A R+AE + KS A+ SH++R+ ++AI GL+++ + + Q
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ Q+ + L +LN ILD SKVESGKM+LE EF + L+E VDM V
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 519 VETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
VE V D D ++ R V GD R+ QI NL+ N++KFT GH+++R W T N
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 576 ---AEF--PTDRKKFGRAFRTKLKQQANNAMNFRED-NKLALCFEVDDTGCGIDQSKWET 629
+ F P + +++ + + + D N + FEV DTG GI Q K +
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQDHVQNDPNLVEFYFEVVDTGIGIPQEKKMS 282
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP---GTLMQLYLLLGA 686
VFE++ Q GGTGLGL IV++ V MGGEI +K P GT +LL
Sbjct: 283 VFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEIS-IKDKEPGERGTCFAFNVLLRI 337
Query: 687 SSESKQIYD-------------------------ADFPNTVVVLATVGSMERMIISQWLR 721
SE +Q D ++F VL G R I+ W+
Sbjct: 338 -SEVQQPQDIEEGPSVPLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRILQTWME 396
Query: 722 --KKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSRE----------PLKAE 768
+ KV + +E+ G T + ++ + D +SS+E P +A
Sbjct: 397 SIEVKVWLVPQAEFIGSTLEKVQSNSTATATAECGSADRCFSSKEMVNLLRNNSSPRRAI 456
Query: 769 MTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNH-QTTSPIKTE 827
+ I + I +VVID++ + + ++ +E I H+ ++ +T S
Sbjct: 457 LGGIPSGI----LVVIDVSGGE-TEEICQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRR 511
Query: 828 LSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSAS 887
L G ++V+ KP++ + LL T ++L Q + S G EI G
Sbjct: 512 LKDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQAQSSHV-----GPEIAG-------- 558
Query: 888 KHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQK--- 944
+S+++DL + D S+ S QK
Sbjct: 559 --------------------NSQQQDLPDVVV-------PCVEDTVASTEASCLAQKPGD 591
Query: 945 -RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ L G+RILLAED ++Q + KI+ ++GA V+V +G AV L R +L
Sbjct: 592 DKPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLL----------REAL 641
Query: 1004 LQGSPSETP--DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
Q + SE P + +I MDCQMP MDGYEAT IR+ E +G + PI+ALTAH M
Sbjct: 642 EQANASEEDIVSLP-YHVIFMDCQMPGMDGYEATKLIREEEQRYGI-HAPIIALTAHDME 699
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D +K + GM+ +L KPI +++V + K
Sbjct: 700 EDLQKAIDAGMDLHLAKPISRKKIVDAVRSFCK 732
>gi|413932652|gb|AFW67203.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
gi|413932653|gb|AFW67204.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 886
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 224/752 (29%), Positives = 342/752 (45%), Gaps = 118/752 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L +L +A R+AE + KS A+ SH++R+ ++AI GL+++ + + Q
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ Q+ + L +LN ILD SKVESGKM+LE EF + L+E VDM V
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 519 VETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
VE V D D ++ R V GD R+ QI NL+ N++KFT GH+++R W T N
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 576 ---AEF--PTDRKKFGRAFRTKLKQQANNAMNFRED-NKLALCFEVDDTGCGIDQSKWET 629
+ F P + +++ + + + D N + FEV DTG GI Q K +
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQDHVQNDPNLVEFYFEVVDTGIGIPQEKKMS 282
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLLLGAS 687
VFE++ Q GGTGLGL IV++ V MGGEI + K GT +LL
Sbjct: 283 VFENYVQ----VNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRI- 337
Query: 688 SESKQIYD-------------------------ADFPNTVVVLATVGSMERMIISQWLR- 721
SE +Q D ++F VL G R I+ W+
Sbjct: 338 SEVQQPQDIEEGPSVPLGTLNRSISIASAFQEASNFKGVHCVLYVHGYETRRILQTWMES 397
Query: 722 -KKKVSTLETSEWHGLT-QILRELLDPISPVSSNGFDAPYSSRE----------PLKAEM 769
+ KV + +E+ G T + ++ + D +SS+E P +A +
Sbjct: 398 IEVKVWLVPQAEFIGSTLEKVQSNSTATATAECGSADRCFSSKEMVNLLRNNSSPRRAIL 457
Query: 770 TNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRK-AMFAWVVNHQTTSPIKTEL 828
I + I +VVID++ + + ++ +E I H+ + + +T S L
Sbjct: 458 GGIPSGI----LVVIDVSGGE-TEEICQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRL 512
Query: 829 SREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASK 888
G ++V+ KP++ + LL T ++L Q + S G EI G
Sbjct: 513 KDMGCDLVLRKPVHGSRQFTLLMTLRDLQVLDAQAQSSHV-----GPEIAG--------- 558
Query: 889 HQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQK---- 944
+S+++DL + D S+ S QK
Sbjct: 559 -------------------NSQQQDLPDVVV-------PCVEDTVASTEASCLAQKPGDD 592
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+ L G+RILLAED ++Q + KI+ ++GA V+V +G AV L R +L
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLL----------REALE 642
Query: 1005 QGSPSETP--DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
Q + SE P + +I MDCQMP MDGYEAT IR+ E +G + PI+ALTAH M
Sbjct: 643 QANASEEDIVSLP-YHVIFMDCQMPGMDGYEATKLIREEEQRYGI-HAPIIALTAHDMEE 700
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D +K + GM+ +L KPI +++V + K
Sbjct: 701 DLQKAIDAGMDLHLAKPISRKKIVDAVRSFCK 732
>gi|302813527|ref|XP_002988449.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
gi|300143851|gb|EFJ10539.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
Length = 325
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 190/328 (57%), Gaps = 24/328 (7%)
Query: 430 MSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESG 488
MSH+LRTP+AAIIGL+++ L ++L+ E S + Q+K + LL +LN ILD+SK E G
Sbjct: 1 MSHDLRTPLAAIIGLIDLCLSHKERLSVELESNMLQMKTCATTLLGILNSILDMSKAEVG 60
Query: 489 KMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN---IPRNVRGDPGRVFQIFS 545
K+ELE +FDL K LEE VD+F+V + +E VL+L D+ + R VRGD GRV Q+
Sbjct: 61 KLELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLC 120
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL------------ 593
+L++N +KFTS G++I+R + + S + + + ++ GR F+
Sbjct: 121 DLLSNGVKFTSRGYVILRAFPKQ---SSSQSWVASASRRSGRWFQKTFVSCLRTSSSSSN 177
Query: 594 -KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
Q + L FEVDDTG GI QS+ E VF +F QG +GGTGLGL
Sbjct: 178 RSSQIPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGL 237
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS---ESKQIYDADFPNTVVVLATVG 709
+IVR+LV+ MGG+IKV K+ PGTL + LL + + ++ + N VVLA G
Sbjct: 238 AIVRSLVHMMGGQIKVANKDGPGTLFKFNLLFQKAQLLENAARVDGLEGQNLQVVLAMAG 297
Query: 710 SMERMIISQWLRKKKVSTL-ETSEWHGL 736
+ R +S W++ K + + E S+W +
Sbjct: 298 ELGRKFVSLWMQNKGAAQVCEVSQWQSI 325
>gi|302796237|ref|XP_002979881.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
gi|300152641|gb|EFJ19283.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
Length = 325
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 190/328 (57%), Gaps = 24/328 (7%)
Query: 430 MSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESG 488
MSH+LRTP+AAIIGL+++ L ++L+ E S + Q+K + LL +LN ILD+SK E G
Sbjct: 1 MSHDLRTPLAAIIGLIDLCLSYKERLSVELESNMLQMKTCATTLLGILNSILDMSKAEVG 60
Query: 489 KMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN---IPRNVRGDPGRVFQIFS 545
K+ELE +FDL K LEE VD+F+V + +E VL+L D+ + R VRGD GRV Q+
Sbjct: 61 KLELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLC 120
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL------------ 593
+L++N +KFTS G++I+R + + S + + + ++ GR F+
Sbjct: 121 DLLSNGVKFTSRGYVILRAFPKQ---SSSQSWVASASRRSGRWFQKTFVSCLRTSGSSSS 177
Query: 594 -KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
Q + L FEVDDTG GI QS+ E VF +F QG +GGTGLGL
Sbjct: 178 RSSQIPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGL 237
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS---ESKQIYDADFPNTVVVLATVG 709
+IVR+LV+ MGG+IKV K+ PGTL + LL + + ++ + N VVLA G
Sbjct: 238 AIVRSLVHMMGGQIKVANKDGPGTLFKFNLLFQKAQLLENAARVDGLEGQNLQVVLAMAG 297
Query: 710 SMERMIISQWLRKKKVSTL-ETSEWHGL 736
+ R +S W++ K + + E S+W +
Sbjct: 298 ELGRKFVSLWMQNKGAAQVCEVSQWQSI 325
>gi|168044281|ref|XP_001774610.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674030|gb|EDQ60544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 189/316 (59%), Gaps = 13/316 (4%)
Query: 431 SHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 490
SHELRTPMA IIGLL++L ++ LT E ++ QI + + +L+ LLN LD++KVESGK+
Sbjct: 3 SHELRTPMACIIGLLDMLLMEN-LTVEHEGSIRQIHRCATSLVSLLNSALDIAKVESGKL 61
Query: 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINN 550
LE EF+L+ EL L+D+FSVQC N N+ LD++D++P+ V GD RV Q+F+NL+ N
Sbjct: 62 VLEKAEFNLEAELTALIDVFSVQCDNKNLFISLDVADDVPKRVIGDSARVMQVFTNLVGN 121
Query: 551 SIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610
S+KFTS G I++R N E K R+F ++ N A N + +
Sbjct: 122 SLKFTSKGRIMVRVRIAN-------PEADVSGKLHQRSFSPFSLERFNEASN--APDLVV 172
Query: 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVK 670
L FEVDDTG GI+ + E +FE+F QG+ STTR HGGTGLGL IVR+LV MGG I++V+
Sbjct: 173 LVFEVDDTGPGIEPALREKIFENFVQGNASTTRTHGGTGLGLGIVRSLVQLMGGSIRIVE 232
Query: 671 KNSPGTLMQLYLLLG-ASSESKQIYDADFP--NTVVVLATVGSMERMIISQWLRKKKVST 727
K+ PG + Q + A+S + P T +++ R + +W+ K +S
Sbjct: 233 KSGPGVVFQFSICFQRATSCDCTPFSLPPPYQGTEIIVGIPDPDCRAVACEWITKLGLSV 292
Query: 728 LETSEWHGLTQILREL 743
+ W + +R L
Sbjct: 293 HQVESWEQILLYMRAL 308
>gi|168005241|ref|XP_001755319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693447|gb|EDQ79799.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 305
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 191/315 (60%), Gaps = 13/315 (4%)
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HELRTPMA IIGLL++L ++ LT E ++ QI + + +L+ LLN LD++KVESGK+
Sbjct: 1 HELRTPMACIIGLLDMLLMEN-LTVEHEGSIRQIHRCATSLVSLLNSALDIAKVESGKLV 59
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE EF+L+ EL L+D+FSVQC N N+ LD++D++P+ V GD RV Q+F+NL+ NS
Sbjct: 60 LEKAEFNLEAELTALIDVFSVQCDNKNLFISLDVADDVPKRVIGDSARVMQVFTNLVGNS 119
Query: 552 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611
+KFTS G I++RG N +T + R+ F F + +A++A + + L
Sbjct: 120 LKFTSKGRIMVRGRIANPETDVSGR---LHRRSFS-PFSLERYTEASSA-----PDTVVL 170
Query: 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
FEVDDTG GI+ + E +FE+F QG+ STTR HGGTGLGL IVR+LV MGG I++V+K
Sbjct: 171 VFEVDDTGPGIEPALREKIFENFVQGNASTTRTHGGTGLGLGIVRSLVQLMGGSIRIVEK 230
Query: 672 NSPGTLMQLYLLLGASSESKQI---YDADFPNTVVVLATVGSMERMIISQWLRKKKVSTL 728
+ PG + Q + ++ + T +++ + R + +W+ K ++
Sbjct: 231 SGPGVVFQFSICFQRATTCDFTPFSLPPSYQGTEIIVGIPDADCRGVACKWITKFGLNVH 290
Query: 729 ETSEWHGLTQILREL 743
+ W + +R L
Sbjct: 291 QVESWEQILLYMRAL 305
>gi|428219292|ref|YP_007103757.1| GAF sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427991074|gb|AFY71329.1| GAF sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1104
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 196/705 (27%), Positives = 325/705 (46%), Gaps = 114/705 (16%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A R+ + + K QFLAN+SHE+R+PM I+G+ E+L +D L ++Q S + ++ S
Sbjct: 483 AFRRIKNAAESKRQFLANISHEIRSPMNGILGIAELL-ADTNLDDQQLSLLQTLQASGQN 541
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL+++N ILD S+ ++ ++ + EF+L K +E +VD+ ++Q + +E + ++P
Sbjct: 542 LLQIINDILDYSRSQAKRISIVKKEFNLIKCIEGVVDLAAIQAHDKGIEVFSYIDPDVPP 601
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD GR+ Q+ +NL+ N++KFT SGHI I + + S ++ T + G +
Sbjct: 602 MLVGDVGRLRQVLTNLVTNAVKFTESGHISISVQSQPVGESCLVSQ--TAIAEDGESTLI 659
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
QA+ + E ++ L F + DTGCGI ++ +FE+F Q P ++KHGGTGLG
Sbjct: 660 ----QADTPLLDLETTQVNLKFTISDTGCGISETNQRELFEAFVQFSPEVSQKHGGTGLG 715
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + +V MGG I V + G+ + + L ++ Q+ LA V
Sbjct: 716 LTISKQIVAAMGGSIGVSSQIGQGSSFWVEVSLPIANLEPQLS----------LAKVILT 765
Query: 712 ERMIISQ---WLRKKKV-------STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSS 761
E I SQ LR+ KV +TL H Q + LD + +G A
Sbjct: 766 ESKISSQTLTMLRQLKVLLVADNDNTLALFNQHA--QFWQLQLDQV----KDGMTA---- 815
Query: 762 REPLKAEMTNIKALID---PVYVVVIDIALLDLSSDLWREQ-LNSLDIFHRKAMFAWVVN 817
+ +K D P V ++D+ L +S+++ + L D+ K A +N
Sbjct: 816 -------LAKLKQANDRNAPYDVAILDLQLSQISAEMLGQGILTDPDLAQTKLAIATFIN 868
Query: 818 HQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEI 877
+ I L +G ++ KP+ G +I+ L A+ N+ S N
Sbjct: 869 Q---AEIANHLIEQGFAAMLIKPVKIGSLIECLRDAI--------NQPPSNQPPSN---- 913
Query: 878 RGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRR-----DQ 932
Q K + + P + R D + + SSR D
Sbjct: 914 ------------QPPNKQAQSDPRLDPPPQTPARSD-AQLGHKPGLDVTSSRAKQAELDP 960
Query: 933 PCSSSN-SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
P + + S + Q + +IL+ ED P+ Q + L+++G V +G +A+ L
Sbjct: 961 PVAQPDRSPATQPKP----KILVVEDNPISQNLVTMQLKQLGYPSDCVSNGEEALTQL-- 1014
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES---EHGAR 1048
D + ++LMDCQMP MDGY AT IR E+ E G
Sbjct: 1015 ---------------------DQEYYPIVLMDCQMPVMDGYTATQAIRHKENQLRESGGE 1053
Query: 1049 NIP--IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ ++A+TA+A AD K CL GM+ YL KP+ + + + + R
Sbjct: 1054 PLATIVIAVTANAFEADRKVCLDAGMDDYLKKPVMKQDLANALER 1098
>gi|168018625|ref|XP_001761846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686901|gb|EDQ73287.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 188/315 (59%), Gaps = 10/315 (3%)
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HELRTPMA IIGLL++L S+ +L ++ ++V QI + + +L+ +LN LD++KVESGK+
Sbjct: 1 HELRTPMACIIGLLDMLLSE-KLLDDIANSVRQIHRCATSLVAILNSALDIAKVESGKLV 59
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE EFDL+ EL L+D+FSVQC N + L L+D++P+NV GD RV Q+F+NLI NS
Sbjct: 60 LEMAEFDLEAELTALIDVFSVQCDNKGLFICLQLADDVPKNVVGDSARVMQVFTNLIGNS 119
Query: 552 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611
IKFTS G I +R + N PT + R F + + + R +++ +
Sbjct: 120 IKFTSCGRISVRARLATPEDGVN----PTSSRLQRRGFSSFSLETMFT--DLRTSDEVII 173
Query: 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
FEVDDTG GI+ + E VFE+F QG STTR HGGTGLGL IV++LV MGG+I++V+K
Sbjct: 174 LFEVDDTGPGIEPTLRERVFENFVQGAASTTRTHGGTGLGLGIVKSLVQIMGGDIRIVEK 233
Query: 672 NSPGTLMQLYLLLGASSESKQ---IYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTL 728
G++ Q + S + ++ I + V+L + R + + W++ +
Sbjct: 234 EGQGSVFQFTICFQRSLKMEKIPFILPSSLEAAEVILGIPNADCRAVAAHWVKTWGLVAH 293
Query: 729 ETSEWHGLTQILREL 743
E W + +R L
Sbjct: 294 EVQTWKEVLIHMRAL 308
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 171/302 (56%), Gaps = 14/302 (4%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+T V++ +K R +LI A+ AE + KS FLANMSHE+RTPM +IG+ +L
Sbjct: 373 VTRDVTELVKARQDLIQ---AKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDT 429
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D L +EQ ++ S+ +LL ++N ILD SK+E+G++++E +FDL+ L + M +
Sbjct: 430 D-LDSEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMA 488
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLD 570
V+ +E + + N+P VRGD GR+ QI NL+ N++KFT G + IR E +D
Sbjct: 489 VKAEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVD 548
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
++ P +R +T +K Q + + + LCF++ DTG GI Q K +++
Sbjct: 549 QRSEVSDQPANRLSHE---QTGIKDQ------YGDSRIVELCFQIRDTGIGIPQDKQDSL 599
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
FESF Q D STTRK GGTGLGL+I R L MGG + G+ + LG E
Sbjct: 600 FESFSQVDASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFTVRLGVQDEQ 659
Query: 691 KQ 692
+Q
Sbjct: 660 QQ 661
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 88/204 (43%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q VA IL+K+G V +G +A+ AL +
Sbjct: 826 RILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENI------------------ 867
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSES------------------------EHG 1046
+DL+LMD QMP+M G EAT IR E EHG
Sbjct: 868 -----PYDLVLMDVQMPEMGGLEATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHG 922
Query: 1047 ARN-----------------------------------------IPIVALTAHAMNADEK 1065
A + IPI+A+TA AM D +
Sbjct: 923 AEDKGQRSEVRDQRLESESQNTSVPESLNPSIPQFLNSSIPEFRIPIIAMTAGAMQEDRE 982
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTI 1089
+C+ GM+ Y KP++ + + +
Sbjct: 983 RCIEAGMDDYTAKPVNPDELARVL 1006
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ +DT I+ + K LE V +G +A+ +AA+ +
Sbjct: 9 ILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALS-----IAAD-------------KI 50
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
PD LIL+D MP MDG+E ++ ++ R+IP+V +TA E K L +G
Sbjct: 51 PD-----LILLDVMMPDMDGFEVCSRLK---ADICTRDIPVVFITASGNKEHEVKGLDLG 102
Query: 1072 MNAYLTKPIDSERMVSTILRLTKNMPSE 1099
++ KP +++ + ++ + + +E
Sbjct: 103 AEDFVHKPFHEGVLLARVGQILRRLQAE 130
>gi|428206662|ref|YP_007091015.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428008583|gb|AFY87146.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 951
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 256/525 (48%), Gaps = 82/525 (15%)
Query: 219 SAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATS-TN 277
SA P++D + +VAV+GV LS + ++++ SG +++ ++G L+A S
Sbjct: 206 SANYPIYDKA---RKLVAVIGVDLLLSDISDFLRKIQISPSGQVFIIERDGLLIANSGAE 262
Query: 278 APL-LTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYM 336
P + N ST + + A DS NP+I+ A++LQ ++GS +QN+++ + Q
Sbjct: 263 KPYKVVNKST--HRISATDSQNPLIRATAKYLQQKFGS------FKAIQNSQVLNFQLKG 314
Query: 337 DTFFLNLK------RLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICI- 389
D FL+++ L + V+++P M + + T+++ SA + +++G +
Sbjct: 315 DRQFLHVQPWRDRYGLDWLVVVVVPESDFMAQINANTRMTILLCFSALLVAIILGIVTSR 374
Query: 390 --------------LILTNGVSKEMKLRA------------------------------- 404
I T +++E+K+ A
Sbjct: 375 WIAQPIGRLSQASEAIATGDLNQEVKVVAVKELKTLSHSFNRMAAQLKDSFEQLENRVQQ 434
Query: 405 ---EL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
EL I+ A+ AEA+N KS+FLANMSHELRTP+ AI+G ++++ LT E
Sbjct: 435 RTRELNEAKIAAETAKETAEAANQAKSEFLANMSHELRTPLNAILGFAQLMQRSRTLTLE 494
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q V I +S LL L+N +LD+SK+E+G++ L EFDL L + +MF ++ +
Sbjct: 495 QQENVSIINRSGEHLLALINDVLDMSKIEAGRLTLHPQEFDLYLMLNAVEEMFQLKADSL 554
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
++ + D ++PR ++ D ++ QI NLI N++KFTS G + +R + D +
Sbjct: 555 GLQLICDRHPDVPRYIKSDEKKLRQILINLIGNALKFTSHGSVTVRVIAGSRDDEQGAG- 613
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFR-EDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
R + GR R + N++ L F V DTG GI + +F++F Q
Sbjct: 614 ---SRGESGR--RGVITNYQLPITNYQLPITNYQLTFTVQDTGVGIAAEELGRLFQAFVQ 668
Query: 637 GDPSTTRK-HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+ T RK GTGLGL+I + V MGGEI V + GT +
Sbjct: 669 TE--TGRKSQQGTGLGLAISQKFVQLMGGEISVSSRIGVGTQFEF 711
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D P + + K+L +G V +G A+ + S
Sbjct: 743 RILVVDDRPENRQIVIKLLTPIGFEVREAENGKDAIAVWS------------------SW 784
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P LI MD +MP M+GYE T I+ S + I+ALTA + ++ L
Sbjct: 785 EP-----HLIWMDMRMPVMNGYETTEYIK---SHLKGQATIIIALTASTLEEEKAVVLST 836
Query: 1071 GMNAYLTKPIDSERM 1085
G + ++ KP +E +
Sbjct: 837 GCDDFMRKPFRAEEL 851
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 161/281 (57%), Gaps = 38/281 (13%)
Query: 399 EMKLRAELISHLDARR---KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
E+ L E ++ RR +AEA+N KSQF+A MSHE+RTPM +IG++E+L+ D L
Sbjct: 226 ELALMREKEEKIETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLR-DTTLD 284
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+ Q + I++S +L+ ++N ILD SK+E+GKM LE+ +FDL++ LE+ V MFS
Sbjct: 285 DSQRHYLGIIERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTD 344
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
N+E + +S N P+ + GDP R+ Q+ NLI N+ KFTS GHI + E + +
Sbjct: 345 KRNIELICSISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHI----YVEARQVNASD 400
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
A+ P + F V+D+G GI+ ++ E +F++F
Sbjct: 401 ADLPM------------------------------IHFSVEDSGIGIESNQQEKLFDAFC 430
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D STTRK GGTGLGL+I + L MGGEI V + G+
Sbjct: 431 QADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGS 471
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 21/136 (15%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P+ ++V +L K DGLQA+ A+ +
Sbjct: 636 LHVLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAV-------------------T 676
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E+P TP +DLI+MDC+MP+MDG+EAT IR ES + I+ALTAH ++
Sbjct: 677 ESP-TP-YDLIIMDCEMPEMDGFEATRSIRTWESNNNQPATTIIALTAHVEAEHRQRVFD 734
Query: 1070 VGMNAYLTKPIDSERM 1085
GMN YL+KP+ E++
Sbjct: 735 SGMNYYLSKPVTMEKL 750
>gi|392308784|ref|ZP_10271318.1| GGDEF domain protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1385
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 172/299 (57%), Gaps = 35/299 (11%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
K L A+ DA ++AEA+ KS+FLANMSHE+RTPM +IG+L++LK+ + L+++
Sbjct: 832 KTASLEAQASDLADALKEAEAATQLKSEFLANMSHEIRTPMNGVIGMLDLLKNSN-LSSD 890
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q +V S+ +LL L+N ILD SK+E+ K+ELE+ +F+L + +E+L + ++
Sbjct: 891 QAHSVNIASSSAQSLLTLINDILDFSKIEADKLELEHIDFNLTELIEQLSESMTLAAQQK 950
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
VE +LDL+D +V DPGR+ Q+ +N+I+N+IKFT G I++ + D + NT
Sbjct: 951 GVEVILDLADIHHPHVTSDPGRIRQVLTNIISNAIKFTEHGEIVVTAKLSSADNNNNT-- 1008
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
L ++ DTG GI+ SK +T+F+SF Q
Sbjct: 1009 --------------------------------ILTCQITDTGIGIEHSKIDTLFDSFSQV 1036
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
D STTRK+GGTGLGLSI R L +GG+I V G+ ++ LL A+++ Y A
Sbjct: 1037 DASTTRKYGGTGLGLSITRRLCQLLGGDISVSSTLGKGSCFEITCLLDANTQLPDTYPA 1095
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 97/149 (65%), Gaps = 19/149 (12%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED + Q+VA K+L KVG V +G++A +L + S ++++L
Sbjct: 1255 RVLLVEDNKVNQLVALKLLSKVGIDTVVAENGVEA------LLKLKESEQKNVL------ 1302
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
F L+LMDCQMP+MDGYEAT +IRK + ++IPI+A+TA+AM D++KCL
Sbjct: 1303 ------FTLVLMDCQMPEMDGYEATKQIRKGSAGVQNQSIPIIAMTANAMQGDKQKCLDA 1356
Query: 1071 GMNAYLTKPIDSERMVSTI-LRLTKNMPS 1098
GMN Y+TKPI++E++++ + L LTK + S
Sbjct: 1357 GMNDYITKPIEAEKVLNKLQLWLTKALRS 1385
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 185/334 (55%), Gaps = 16/334 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S ILVI + I V++ K+ + + +++AEA++ KSQFLA +SH
Sbjct: 394 LAITTSTGILVIALLVGHIFHATVNRIAKVEEDYRDMMMLKKRAEAADVAKSQFLATVSH 453
Query: 433 ELRTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM ++G+L +L +D +T + Y Q S AL+ L+N +LD +K+ESGK+E
Sbjct: 454 EIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTAQ--ASGKALVSLINEVLDQAKIESGKLE 511
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE +FDLQ L++++ +FS + VE + +SD +P+ + GDPGR QI +NL+ NS
Sbjct: 512 LEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPKMLIGDPGRFRQIITNLMGNS 571
Query: 552 IKFTSSGHIIIRGW----------CENLDTSKNT-AEFP-TDRKKFGRAFRTKLKQQANN 599
IKFT GHI + E +SKNT + P DR+ FRT ++ +
Sbjct: 572 IKFTEKGHIFVTIHLVEELMDSIEVETESSSKNTLSGLPVADRRCSWEGFRTFNQEGLTS 631
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + + L V+DTG GI + VF F Q PS +R HGGTG+GLSI + LV
Sbjct: 632 PFSSSSSDLIHLIVSVEDTGVGIPEEAQSRVFTPFMQVGPSISRIHGGTGIGLSISKCLV 691
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLL-GASSESKQ 692
M GEI V + + G+ + G S+S +
Sbjct: 692 GLMNGEIGFVSRPNVGSTFTFTAVFSGGCSKSNE 725
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 39/173 (22%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G +IL+ +D + VA L+K GA V G A+ L
Sbjct: 887 RNLLRGRKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLK------------- 933
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES------EHGARNI------- 1050
P + FD MD QMP+MDG+EAT IR+ E +HG ++
Sbjct: 934 ---PPHD------FDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANIS 984
Query: 1051 ----PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
PI+A+TA + A ++CL GM+ Y++KP ++E++ + R + P +
Sbjct: 985 NWHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQPPPEQ 1037
>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
Length = 1002
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 175/309 (56%), Gaps = 9/309 (2%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I SV ILVI + I+ V++ K+ + ++ +R+AEA++ KSQFLA +SHE+
Sbjct: 388 IFTSVGILVIDMLVAQIIYATVNRIAKVEDDYHQMMELKRRAEAADVAKSQFLATVSHEI 447
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D +L Q V ++S AL+ L+N +LD +K+ESGK+ELE
Sbjct: 448 RTPMNGVLGMLQMLM-DTRLDETQQDYVRTARESGKALVSLINEVLDQAKIESGKLELEA 506
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + + VE + +S +P + GDPGR QI +NL+ NSIKF
Sbjct: 507 VSFDLRAILDDVLSLFSGKSQDKKVELAVYVSSKVPSTLIGDPGRFRQIVTNLVGNSIKF 566
Query: 555 TSSGHIIIRGWC--ENLDTSKNTAE----FP-TDRKKFGRAFRTKLKQQANNAMNFREDN 607
T GHI + + E ++T T P DR++ FR Q N + +
Sbjct: 567 TDKGHIFVTVYLVEEVMETEAETGSSLSGLPVVDRRRSWSRFRV-FSQDNNTPLAGSSPD 625
Query: 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 667
++ + V+DTG GI VF F Q PS TR HGGTG+GLSI + LV M GEI
Sbjct: 626 QVNVMVSVEDTGQGIPVEAQSRVFNPFMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIG 685
Query: 668 VVKKNSPGT 676
+ G+
Sbjct: 686 LASTPQVGS 694
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 41/165 (24%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L+G RIL+ +D + VA L+K GA V G +A+ L
Sbjct: 849 LLQGRRILVVDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLL---------------- 892
Query: 1006 GSPSETPDTPR-FDLILMDCQMPKMDGYEATIEIRKSES------EHGAR---------- 1048
TP P F MD QMP+MDG+EAT IR ES E G
Sbjct: 893 -----TP--PHLFHACFMDIQMPEMDGFEATRRIRDIESGINKGIEDGRLSLESYGNVSN 945
Query: 1049 -NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
++PI+A+TA + A ++C GM+ Y++KP +++++ + R
Sbjct: 946 WHVPILAMTADVIQATSEECSKCGMDGYVSKPFEADQLYREVSRF 990
>gi|392545118|ref|ZP_10292255.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1107
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 175/322 (54%), Gaps = 37/322 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ +AE ++ KS+FLA+MSHE+RTPM ++G+L +L S+ +L +Q V S+
Sbjct: 557 EAKSQAEQASRAKSEFLASMSHEIRTPMNGVLGMLNLLLSN-ELDEQQTHRVKLAMSSAN 615
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL L+N ILD SKV++GK+ELE +FDL+ E+ + ++Q +E VLD D
Sbjct: 616 SLLNLINDILDFSKVDAGKLELEMLDFDLRGMFEDFAEAAALQAQCKGLELVLDTLDIEE 675
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+GDP R+ QI +NL+ N+IKFT G +II+G
Sbjct: 676 SMAKGDPSRIRQILANLVGNAIKFTEQGEVIIQG-------------------------- 709
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
KL +Q DN L L + DTG GI ++K +F+SF Q D STTRK+GGTGL
Sbjct: 710 -KLIEQG--------DNVLRLECAITDTGIGIPKAKSAALFDSFSQVDSSTTRKYGGTGL 760
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY-DADFPNTVVVLATVG 709
GL+IVR L MGG++ V G+ +LL S++SKQ+ D D +++
Sbjct: 761 GLAIVRKLCQLMGGDVSVQSIEGEGSTFTFTVLLEKSAQSKQVLPDLDMSQLELLVVDDN 820
Query: 710 SMERMIISQWLRKKKVSTLETS 731
R ++ Q LR E+S
Sbjct: 821 QTNRTVLGQQLRHWGAQVFESS 842
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 20/140 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
RILLAED + QIV +L+K+ +V VV DG +A+ L +E
Sbjct: 974 RILLAEDNQVNQIVTVSMLQKLDIESVDVVSDGNEALRNLREYQYSEG------------ 1021
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ L+LMDCQMP+MDG+ AT IRK ++ +I IVALTA+AM DEKKCL
Sbjct: 1022 -------YSLVLMDCQMPEMDGFHATKAIRKGQAGKSNTDITIVALTANAMVGDEKKCLE 1074
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GMN YL+KP+ E +++ +
Sbjct: 1075 AGMNDYLSKPVSIEALLTCL 1094
>gi|351728725|ref|ZP_08946416.1| hypothetical protein AradN_03058 [Acidovorax radicis N35]
Length = 1020
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 236/484 (48%), Gaps = 106/484 (21%)
Query: 401 KLRAELISHLD----ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
++ A L H D A+ KAE ++ KS FLANMSHE+RTPM A+IG+ + + +LT
Sbjct: 243 QVNAALREHEDELVVAQAKAEDASRMKSDFLANMSHEIRTPMNAVIGMSHLALAT-ELTV 301
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
Q + +I++S LL L+N ILD SK+E+GK+E+E +FDL L+ + ++ +C++
Sbjct: 302 RQRDYIQKIQRSGQHLLGLINDILDFSKIEAGKLEVEVVDFDLHGVLDNVANLLGEKCAS 361
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
+E + D+ ++P ++RGDP R+ QI N NN++KFT G II+R
Sbjct: 362 KGLELMFDVDSHLPADLRGDPLRLGQILVNYANNAVKFTDEGEIIVR------------- 408
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
+++ A +A + L FEV DTG G+ + +F SFEQ
Sbjct: 409 ----------------VREAARDAQG------VLLRFEVQDTGIGLTDEQQSRLFRSFEQ 446
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY----LLLGASSESKQ 692
D STTRK+GGTGLGL+I + L + MGG++ V +++PG + L LGAS++
Sbjct: 447 ADTSTTRKYGGTGLGLAISKKLASLMGGDVGV--QSAPGRGSTFWFTARLGLGASTQRPL 504
Query: 693 IYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPIS---P 749
+ + D LR ++V ++ SE QIL ELL +S
Sbjct: 505 LPEPD----------------------LRGRRVLVVDDSEQA--RQILAELLSSMSFSVT 540
Query: 750 VSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRK 809
++S+G A +R +A +IA LD W+ + +D F
Sbjct: 541 LASSGAQAVDLARAADQAGRP-------------CEIAFLD-----WK--MPGMDGFETA 580
Query: 810 AMFAW--------VVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGM 861
A +V + EL+R G +++TKP+ QL + A+R LG
Sbjct: 581 RQLAQLPHPPRPVIVTAHGRDDVLNELTRSGIGLMLTKPVNPS---QLFDAAMRA--LGG 635
Query: 862 QNRI 865
R+
Sbjct: 636 AQRV 639
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL +D L Q V ++L G V V +G A++ L R G
Sbjct: 657 IRGARVLLVDDNDLNQQVGRELLTSAGLVVDVADNGQAALDMLAR--------------G 702
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ +D++LMD QMP MDG AT +R++ + AR +P++A+TA+AM++D ++
Sbjct: 703 T---------YDIVLMDMQMPVMDGLTATRHLRQNPT--WAR-LPVLAMTANAMSSDREQ 750
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPID E + + +L+
Sbjct: 751 CLDAGMNGHIAKPIDPEALFAALLQ 775
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D+ + + ++L + +V++ G QAV+ L R AA+ + G
Sbjct: 510 LRGRRVLVVDDSEQARQILAELLSSMSFSVTLASSGAQAVD-LAR--AADQA-------G 559
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P E + +D +MP MDG+E ++ ++ H R P++ +TAH + +
Sbjct: 560 RPCE--------IAFLDWKMPGMDGFETARQL--AQLPHPPR--PVI-VTAHGRDDVLNE 606
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
G+ LTKP++ ++ +R
Sbjct: 607 LTRSGIGLMLTKPVNPSQLFDAAMR 631
>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
Length = 1682
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 185/351 (52%), Gaps = 47/351 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A++ AE + K+ FLANMSHE+RTPM A+IG+ ++ + D LT +Q + +I+ SS
Sbjct: 924 NAQKLAEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTD-LTRQQRDYLKKIQGSSQ 982
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILDLSK+E+GKM +E+ EFDL LE + + S + + +E ++D+ +P
Sbjct: 983 HLLGIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDVGKTVP 1042
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R++ GDP R+ Q+ N NN++KFT G I+IR C+ +T+
Sbjct: 1043 RSLVGDPLRLGQVLINYANNAVKFTERGSIVIR--CDLAETA------------------ 1082
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ + L F V DTG GI+ + +F++FEQ D STTRK+GGTGL
Sbjct: 1083 ---------------ERDVVLRFSVTDTGIGIEAEQIPRLFQTFEQADNSTTRKYGGTGL 1127
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQL--YLLLGASSESKQIYDADFPNTVVVLATV 708
GL+I R L + MGGE V + G+ L G+ S+ + DAD V++
Sbjct: 1128 GLAISRELAHMMGGEAGVDSEYGKGSTFWFTARLARGSGSDRSLVPDADLRGRKVLVVDD 1187
Query: 709 GSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPY 759
+ R +I LR + S GL E LD I ++ G PY
Sbjct: 1188 NDLAREVIGDLLRSMSFAVSTAS--SGL-----EALDEIQRANAAGM--PY 1229
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 71/135 (52%), Gaps = 23/135 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G RILL ED L Q VA +L G V V +G A++ L G
Sbjct: 1325 IAGARILLVEDNDLNQEVAVGLLAGAGFVVEVAENGAVALDLLQ--------------AG 1370
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P +DL+LMD QMP MDG AT EIR+ G +PIVA+TA+AM +D +K
Sbjct: 1371 GPG------CYDLVLMDMQMPVMDGVTATGEIRRLP---GFDTLPIVAMTANAMASDREK 1421
Query: 1067 CLGVGMNAYLTKPID 1081
CL GM+ +L KPID
Sbjct: 1422 CLAAGMDDHLAKPID 1436
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++L+ +D L + V +L + VS GL+A++ + R AA G
Sbjct: 1177 LRGRKVLVVDDNDLAREVIGDLLRSMSFAVSTASSGLEALDEIQRANAA----------G 1226
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P ++++ +D QMP +DG E I+++ + R ++ +TA+ + K
Sbjct: 1227 MP--------YEVVFLDWQMPGIDGVETARRIKRALAASSPR---LLMVTAYGRDEVMKS 1275
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
G++ L KP+ + + T++R
Sbjct: 1276 AADAGIHDLLIKPVTASLLFDTLMR 1300
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 37/307 (12%)
Query: 379 VCILVIGCICILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTP 437
+ +L +G I++L + + + R LI L+ A+ +AEA++ +K++FLANMSHE+RTP
Sbjct: 739 LALLSVGSCAIIVLACVAAIQYRRRGSLILELNRAKEQAEAASRHKTEFLANMSHEIRTP 798
Query: 438 MAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEF 497
M +IG+ +L D +LT EQ +++S +LL L+N ILD SKVE+GK+ +E + F
Sbjct: 799 MNGVIGMTGLLL-DTELTTEQRDYAGTVRRSGESLLTLINDILDFSKVEAGKLAIEASAF 857
Query: 498 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS 557
DL+ +EE+ +M + + N ++ VL PR+ GD GR+ Q+ +NL+ N+IKFT
Sbjct: 858 DLRSTIEEVDEMLAPKIENRKLDLVLQYPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGE 917
Query: 558 GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 617
G I+I CE+ D ++ + + D
Sbjct: 918 GSIVIEVVCESQDEARAV-----------------------------------MRVAIHD 942
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL 677
TG GI K ++FE F Q D STTRK+GGTGLGL+I + LV+ MGG + V + G+
Sbjct: 943 TGPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGST 1002
Query: 678 MQLYLLL 684
L L
Sbjct: 1003 FSFTLPL 1009
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 27/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+AED + Q V+ ++L+K+G V DG +AV AL ++
Sbjct: 1184 VRVLVAEDNVVNQKVSARMLDKLGIRADVAADGREAV-ALFGLVP--------------- 1227
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DLI MDCQMP+MDGY AT EIR+ E R +PI A+TA + + CL
Sbjct: 1228 -------YDLIFMDCQMPEMDGYAATREIRRREGP--GRRVPIAAMTAEVLGGCRELCLA 1278
Query: 1070 VGMNAYLTKPIDSERMVSTILRL--TKNMP 1097
GM+ ++ KP+ E + T+ R +N P
Sbjct: 1279 AGMDDHIPKPVKMEVLFETLRRWIPARNCP 1308
>gi|394989866|ref|ZP_10382699.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
gi|393791366|dbj|GAB72338.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
Length = 1650
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 51/355 (14%)
Query: 408 SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKK 467
+ ++AR+ AEA+N KS+FLANMSHE+RTPM AI+GL +++ D +LT+ Q + +
Sbjct: 1040 AQIEARQAAEAANRAKSEFLANMSHEIRTPMNAILGLTQLVL-DTELTHHQQDFLKKTHA 1098
Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD 527
S+ +LL +LN ILD SK+E+G M +E F LQ+ LE++ D+FS + +E +L+++
Sbjct: 1099 SARSLLGILNDILDFSKIEAGHMSIEQVPFHLQESLEQVADLFSARIEEKKLELILEIAP 1158
Query: 528 NIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGR 587
++P + GDP R+ Q+ +NL++N+IKFT G I I K
Sbjct: 1159 DVPAEILGDPLRLSQVLTNLVSNAIKFTERGEIHI---------------------KVEV 1197
Query: 588 AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
A T QQ L F V DTG G+ + E +F++F Q D STTRK+GG
Sbjct: 1198 AEHTPATQQ--------------LRFSVRDTGIGLSSGQAERLFQAFTQADSSTTRKYGG 1243
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD---ADFP-NTV- 702
TGLGL+I + LV MGGEI V G+ + G + + A P +TV
Sbjct: 1244 TGLGLAICKQLVELMGGEISVSSVEGQGSAFIFTIQAGVAPSHNTVQPLSLAGAPADTVA 1303
Query: 703 ---------VVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPI 747
V+L ++ R++ +++L ++ VS TL + ++ E D +
Sbjct: 1304 SPQGLQGVRVLLVEDNAINRLMAAEFLERRGVSLTLAEHGGEAVERVKTETFDAV 1358
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 31/172 (18%)
Query: 932 QPCSSSNSSSN---QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
QP S + + ++ + L+G+R+LL ED + +++A + LE+ G ++++ G +AVE
Sbjct: 1290 QPLSLAGAPADTVASPQGLQGVRVLLVEDNAINRLMAAEFLERRGVSLTLAEHGGEAVER 1349
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
+ T FD +LMD MP MDG EA IR+ +
Sbjct: 1350 VK-----------------------TETFDAVLMDLHMPIMDGLEAARLIRELPQ---GK 1383
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR--LTKNMPS 1098
++PI+A+TA + D +C VGM ++ KPID E M+ +L+ T + PS
Sbjct: 1384 SLPIIAMTAAVLQEDRDQCAAVGMVDFIAKPIDPEDMIRVLLKWVTTGSQPS 1435
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 185/316 (58%), Gaps = 14/316 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ +LVI + I V++ K+ + ++ +++AEA++ KSQFLA +SH
Sbjct: 366 LAITTSIGVLVIVLLIGHIFHATVNRIAKVEDDYHEMMELKKRAEAADIAKSQFLATVSH 425
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L +L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 426 EIRTPMNGVLGMLHMLM-DTNLDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 484
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
EN +F+L+ L++++ +FS + VE + +SD++P + GDPGR QI NL+ NSI
Sbjct: 485 ENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISDSVPELLIGDPGRFRQIIINLMGNSI 544
Query: 553 KFTSSGHI-----IIRGWCENLD-----TSKNTAE-FP-TDRKKFGRAFRTKLKQQANNA 600
KFT GH+ ++ +++D +S+NT FP DR++ FRT ++ +N A
Sbjct: 545 KFTHQGHVFVTVHLVEEVIDSIDVETGSSSRNTVSGFPVADRRRSWAGFRTFSQEGSNRA 604
Query: 601 MNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
+ + + L V+DTG GI +F F Q PST+RK+GGTG+GLSI + LV
Sbjct: 605 L-LPSSDHINLIVSVEDTGEGIPLEAQPRIFIPFMQVGPSTSRKYGGTGIGLSISKCLVG 663
Query: 661 KMGGEIKVVKKNSPGT 676
M GEI V GT
Sbjct: 664 LMNGEIGFVSIPRIGT 679
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 43/159 (27%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G +IL+ +D + VA L+K GA V + G +A++ L
Sbjct: 855 LLLGRKILIVDDNSVNLKVAAGALKKYGADVVCIESGEKAIKLL---------------- 898
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN---------------- 1049
TP +FD MD QMP+MDG+EAT IR + EH +N
Sbjct: 899 -----TP-PHQFDACFMDIQMPEMDGFEATRRIR--DREHNFKNSIQSGDKTVGGYENLP 950
Query: 1050 ---IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
+PI+A+TA + A ++C GM+ Y++KP ++E++
Sbjct: 951 NWHVPILAMTADVIQATHEECSKCGMDGYVSKPFEAEQL 989
>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
Length = 1053
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 184/334 (55%), Gaps = 16/334 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I V++ K+ + + +++AEA++ KSQFLA +SH
Sbjct: 394 LAITTSIGILVIALLVGYIFHATVNRIAKVEDDCQKMTELKKQAEAADVAKSQFLATVSH 453
Query: 433 ELRTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM ++G+L++L D +T + Y Q S AL+ L+N +LD +K+ESG++E
Sbjct: 454 EIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQ--DSGKALVSLINEVLDQAKIESGRLE 511
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE +FDL+ L++++ +FS + + VE + +SD +P + GD GR QI +NL+ NS
Sbjct: 512 LEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYISDQVPEMLIGDAGRFRQIITNLMGNS 571
Query: 552 IKFTSSGHIIIRGW----------CENLDTSKNT-AEFP-TDRKKFGRAFRTKLKQQANN 599
IKFT GHI + E +S NT + FP DRK FRT ++ +
Sbjct: 572 IKFTEKGHIFVTVHLVEEVIGSIEVETESSSNNTLSGFPVADRKSSWDGFRTFSQEGSTC 631
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++ + + L V+DTG GI + VF F Q PS +R HGGTG+GLSI + LV
Sbjct: 632 PLSSSSSDLINLIVSVEDTGVGIPREAQSRVFTPFMQVGPSISRTHGGTGIGLSISKCLV 691
Query: 660 NKMGGEIKVVK-KNSPGTLMQLYLLLGASSESKQ 692
M GEI V N+ T + ASS +
Sbjct: 692 GLMKGEIGFVSIPNTGSTFTFTAVFTNASSHPNE 725
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 43/187 (22%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G + P + S+ + +L G +IL+ +D + VA L+K GA V
Sbjct: 868 MGVGNKGNPRNGELPGSSLRNLLLGRKILIVDDNNVNLRVAAGALKKYGADV-------- 919
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
+ AES ++ L P FD MD QMP++DG+EAT IR + E
Sbjct: 920 --------VCAESGKKAISLLKPPHH------FDACFMDIQMPEIDGFEATRRIR--DME 963
Query: 1045 HGARN-------------------IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
H N +PI+A+TA + A ++ + GM+ Y++KP +++++
Sbjct: 964 HNINNSIQRGEVSVEGPQTISNWHVPILAMTADVIQATHEESIKCGMDGYVSKPFEAQQL 1023
Query: 1086 VSTILRL 1092
+ R
Sbjct: 1024 YREVSRF 1030
>gi|15226594|ref|NP_182265.1| histidine kinase CKI1 [Arabidopsis thaliana]
gi|75097398|sp|O22267.1|CKI1_ARATH RecName: Full=Histidine kinase CKI1; AltName: Full=Protein
CYTOKININ-INDEPENDENT 1
gi|1679803|dbj|BAA13416.1| histidine kinase homolog [Arabidopsis thaliana]
gi|2529684|gb|AAC62867.1| putative histidine kinase [Arabidopsis thaliana]
gi|330255746|gb|AEC10840.1| histidine kinase CKI1 [Arabidopsis thaliana]
Length = 1122
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 153/549 (27%), Positives = 273/549 (49%), Gaps = 63/549 (11%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASW-HVAVSKFTNSPLLSAALP 223
WY + +D +TG G ++ D+ + W A S + + +L
Sbjct: 155 WYTQTVDQLTGRLNGNSTKSQSLDVTH-----------TDWFQAAQSNNYTTAFVGTSLG 203
Query: 224 VWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEV------HSGHIYLTSQEGYLL---AT 274
D T +S+V++ L S+G +K L EV H +Y+ +++G +L +
Sbjct: 204 GEDNETLIQSVVSLYS-KKGLVSLGFPVKTLTEVLNSLNLHGEELYMWTKDGTVLVREGS 262
Query: 275 STNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQY 334
++ ++N S + +S+ + W Q + G+ + ++ + Y
Sbjct: 263 LNDSFFISNGS----ICFGRESN-------SLWSQCIPENCSSSGYEVEIKRLR-----Y 306
Query: 335 YMDTFFLNLKRLPIVGVIIIPRE----YIMGKADERAYKTLIILISASVCILVIG--CIC 388
+ + +P+ ++ P + I +A++ Y+ ++++I L G
Sbjct: 307 QAFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMI-----FLGFGWPVWF 361
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+ + +EM +RA LI+ ++A ++AE + KSQ AN SH++R +A + GL++I
Sbjct: 362 VWFMMQATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGLIDIC 421
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
+ + ++ +T+ Q+ + L+ LLN +LD+SK+ESGKM+L +F+L K LE+++D
Sbjct: 422 RDGVKPGSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVID 481
Query: 509 MFSVQCSNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
+ V+ VLD D NVRGD GR+ QI +NL++N++KFT GHI +R W
Sbjct: 482 FYHPVAMKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIAVRAW 541
Query: 566 CENLDTSKNT--AEFPTDRKKFGRAFRTKLKQQANN-----AMNFRED-NKLALCFEVDD 617
+ ++ + A +P KF ++ K K++++ + + R + N + FEVDD
Sbjct: 542 AQRPGSNSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDD 601
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPG 675
TG GI ++VFE++ Q T + H GTGLGL IV++LV MGGEI++ K G
Sbjct: 602 TGKGIPMEMRKSVFENYVQVR-ETAQGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKG 660
Query: 676 TLMQLYLLL 684
T Q +LL
Sbjct: 661 TCFQFNVLL 669
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Query: 907 SSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVAC 966
+ S E + ++ R IG+ +Q S + L G R+L+ +D + + VA
Sbjct: 947 TDSESETRVKSVRTGRKPIGNPEDEQ----ETSKPSDDEFLRGKRVLVVDDNFISRKVAT 1002
Query: 967 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026
L+K+G VS V EAL R++ ++R QGS + P FD I MDCQM
Sbjct: 1003 GKLKKMG--VSEVEQCDSGKEAL-RLVTEGLTQREE--QGSVDKLP----FDYIFMDCQM 1053
Query: 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE-KKCLGVGMNAYLTKPID 1081
P+MDGYEAT EIRK E +G R PI+A++ H ++E ++ + GM+A+L K ++
Sbjct: 1054 PEMDGYEATREIRKVEKSYGVRT-PIIAVSGHDPGSEEARETIQAGMDAFLDKSLN 1108
>gi|365092001|ref|ZP_09329252.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363415738|gb|EHL22864.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1033
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 154/274 (56%), Gaps = 36/274 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE ++ KS FLANMSHE+RTPM A+IG+ + + D LT Q V +I++S
Sbjct: 258 ARARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALATD-LTPRQRDYVEKIQRSGQH 316
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+GK+E+E +FDL+ L+ + ++ S +C++ +E + D+ +P
Sbjct: 317 LLGLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSEKCAHKGLELLFDVDPALPD 376
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++RGDP R+ QI N NN++KFT G II+R E +
Sbjct: 377 HLRGDPLRLGQILVNYANNAVKFTERGEIIVR-VTETV---------------------- 413
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R+D + L FEV DTG G+ + +F SFEQ D STTRK+GGTGLG
Sbjct: 414 ------------RDDTGVLLRFEVQDTGIGLTSEQQSRLFRSFEQADTSTTRKYGGTGLG 461
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
L+I R L MGGE+ V + G+ LG
Sbjct: 462 LAISRKLAGLMGGEVGVQSQAGVGSTFWFTARLG 495
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 29/159 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL +D L Q V ++L G V V +G A++ MLA S
Sbjct: 657 IAGARVLLVDDNDLNQQVGAELLSGAGLAVDVAHNGQVALD----MLAQTS--------- 703
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+DL+LMD QMP MDG AT +R++ + ++P++A+TA+AM+ D
Sbjct: 704 ----------YDLVLMDMQMPVMDGLTATRHLRQNPAW---ADLPVLAMTANAMSHDRDL 750
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
C+ GMN +L KPID + + +T+L+ + ATG R
Sbjct: 751 CIAAGMNGHLAKPIDPDALFATLLQWIR---PRATGNAR 786
>gi|392551218|ref|ZP_10298355.1| GGDEF domain protein [Pseudoalteromonas spongiae UST010723-006]
Length = 1380
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 203/377 (53%), Gaps = 48/377 (12%)
Query: 397 SKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
+KE+KL A +KAE + KS+FLANMSHE+RTPM +IG+L++LK D +L++
Sbjct: 844 AKELKL---------ALQKAETATKLKSEFLANMSHEIRTPMNGVIGMLQLLK-DSRLSD 893
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
EQ V S+ +LL L+N ILD SK+E+ ++ELE +FDL+ LE+L + ++
Sbjct: 894 EQAHRVSIASSSAKSLLTLINDILDFSKIEADRIELEYIDFDLRNLLEKLAESVALDAQL 953
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
+VE +LD++ +V DPGR+ QI +N+++N++KFT SG I+IR A
Sbjct: 954 KDVEVILDINAISVSHVNSDPGRIRQILTNILSNAVKFTESGQIVIR------------A 1001
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
E D +K G F + N C E+ DTG GI + K ++F++F Q
Sbjct: 1002 EL-CDSEKIG----------------FSQLN----C-EIQDTGIGIAKDKVTSLFDAFSQ 1039
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
GD STTRK+GGTGLGLSI R L N + G++ V K G+ + L+ ++ ++ D
Sbjct: 1040 GDASTTRKYGGTGLGLSITRKLCNLLQGDVTVTSKLGEGSCFNVTCLVKNIAQPTKVNDG 1099
Query: 697 D-FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGF 755
F +++A +I Q L + + + + Q++ L ++ +
Sbjct: 1100 PLFAFLTMLIADANDTNCQVIKQLLEGESANAIVA---NSAEQVMAHLSSDLATIDLVLM 1156
Query: 756 DAPYSSREPLKAEMTNI 772
DA + L+ ++T +
Sbjct: 1157 DAKLYENDLLQQQLTRL 1173
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 22/153 (14%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
+QP S +++ + I + +LL ED P+ Q+VA +L+ +G T V +G A+ AL
Sbjct: 1234 EQPTSLNDTDTT---IFNDVHVLLVEDNPVNQMVALSVLKNLGVTADVASNGHDALAALK 1290
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
M PS+ + I+MDCQMP+MDGYE T +I+ E+ A NI
Sbjct: 1291 AM-------------DKPSD------YAAIIMDCQMPEMDGYETTSKIKSGEAGKSAANI 1331
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
PI+A+TA+AM DE+KCL GM+ Y+TKPI+ E
Sbjct: 1332 PIIAMTANAMQGDEQKCLAAGMDDYMTKPIEKE 1364
>gi|407939108|ref|YP_006854749.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
gi|407896902|gb|AFU46111.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
Length = 1028
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 160/279 (57%), Gaps = 42/279 (15%)
Query: 401 KLRAELISHLD----ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
K+ A L H D AR +AE ++ KS FLANMSHE+RTPM A+IG+ + D LT
Sbjct: 243 KVNAALREHEDELEIARARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALGTD-LTP 301
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
Q V +I++S LL L+N ILD SK+E+GK+E+E +FDL+ L+ + ++ S +C++
Sbjct: 302 RQRDYVEKIQRSGQHLLGLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSDKCAH 361
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
+E + D+ +P ++RGDP R+ QI N NN++KFT +G II+R
Sbjct: 362 KGLELLFDVDPALPDDLRGDPLRLGQILVNYANNAVKFTDTGEIIVR------------- 408
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
T+ + R+D + L FEV DTG G+ + +F SFEQ
Sbjct: 409 --VTETE--------------------RDDTGVLLRFEVQDTGIGLTTEQQSRLFRSFEQ 446
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
D STTRK+GGTGLGL+I + L MGGE+ V ++ PG
Sbjct: 447 ADTSTTRKYGGTGLGLAISKKLAGLMGGEVGV--QSQPG 483
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL +D L Q V ++L G V V +G A++ L
Sbjct: 657 IAGARVLLVDDNDLNQQVGAELLSGAGLVVDVAQNGQVALDML----------------- 699
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++TP +DL+LMD QMP+MDG AT +R++ + +P++A+TA+AM+ D
Sbjct: 700 --AQTP----YDLVLMDMQMPEMDGLTATRHLRQNPA---WAQLPVLAMTANAMSRDRDL 750
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN +L KPID + + + +L+
Sbjct: 751 CLEAGMNGHLAKPIDPDELFAALLQ 775
>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 948
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 163/284 (57%), Gaps = 39/284 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR +AEA+ KS+FLA MSHE+RTPM ++G+L +L S +L +Q + + S+
Sbjct: 405 EAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLL-SRTELDQDQQHHLEIAQGSAK 463
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL L+N ILD SK+ESGK+ LE+ EF+L + L+EL+ +++ ++E LD+S P
Sbjct: 464 SLLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDISQIKP 523
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
N+ GDPGR+ Q+ +NLI N+IKFT G II+ G T+KN
Sbjct: 524 ANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKL----TAKN---------------- 563
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
N L F + DTG G+ Q K E +F++F Q D STTR +GGTGL
Sbjct: 564 ----------------NNHRLTFSIQDTGIGMKQDKLENIFQAFSQADNSTTRHYGGTGL 607
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT--LMQLYLLLGASSESKQ 692
GLSI + L + M G+I V K + G+ ++ L + L S+ KQ
Sbjct: 608 GLSIAKHLSHLMNGDISVTSKENIGSHFVVDLEIQLPDSNSMKQ 651
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%), Gaps = 19/140 (13%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LLAED + Q+VA I+++ G + +V DG+QA++AL ++SS+
Sbjct: 812 RLLLAEDNMVNQLVAEGIIKEFGLEIEIVNDGIQALKAL-----SDSSQ----------- 855
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D P + LI MDCQMPK+DGY+ T +IR E+ +N+PI+A+TA+AM D++KCL +
Sbjct: 856 --DNP-YHLIFMDCQMPKLDGYQTTAKIRDGEAGEHYKNLPIIAMTANAMVGDKEKCLAI 912
Query: 1071 GMNAYLTKPIDSERMVSTIL 1090
GMN Y++KP++ E + + +L
Sbjct: 913 GMNDYISKPLEPEHIKTALL 932
>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 926
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 162/275 (58%), Gaps = 28/275 (10%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+A+A+N KSQFLANMSHE+RTPM ++G+ E+L S LT EQ + KS +LL
Sbjct: 267 EAQAANAAKSQFLANMSHEIRTPMNGVLGMTELLLST-SLTPEQKRFAENVHKSGESLLS 325
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+G ++LE+ +F L + +E+++++FS + N ++E ++ ++P NV
Sbjct: 326 IINDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVI 385
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDP R+ QI SNL++N+IKFTS G+I + L + N D + +G
Sbjct: 386 GDPTRLRQILSNLLSNAIKFTSQGNITVD---VGLTDTPNNNRIINDERAYG-------- 434
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ F V DTG GI + +F+ F Q D STTRK+GGTGLGLSI
Sbjct: 435 ----------------VRFTVSDTGIGISKGVIPNLFQPFSQADSSTTRKYGGTGLGLSI 478
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
+ LVN M G+I+V + GT + L L ASS+
Sbjct: 479 CKQLVNMMSGDIEVHARIGEGTTFTVNLPLFASSK 513
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 36/189 (19%)
Query: 910 RREDLIHTMFRE-----RHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIV 964
R+ DL ++ R +R D P +++ S ILL ED + Q V
Sbjct: 638 RKADLYQSLLNALGASIRLPHSETRLDMPATAAAQLSAH--------ILLVEDNRINQAV 689
Query: 965 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024
A +L G TV + +GL+A++A++R +DL+LMDC
Sbjct: 690 AQAMLNSFGCTVDIAENGLEALQAIDR-----------------------KAYDLVLMDC 726
Query: 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER 1084
MPKMDGYE T EIR+ ++ PI+ALTA+A+ D +KCL GM+ YLTKP +S
Sbjct: 727 MMPKMDGYETTAEIRRRQNCDNLSRFPIIALTANAIEGDREKCLLAGMDDYLTKPFESAA 786
Query: 1085 MVSTILRLT 1093
+ I R T
Sbjct: 787 LYKMISRWT 795
>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1103
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 162/291 (55%), Gaps = 38/291 (13%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+ +++ E L+ A++ AE KS+FLA+MSHE+RTPM +IG+L +L+ D+
Sbjct: 534 GIQQDITAAVEAKKELEQAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLE-DEH 592
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT Q V S+ +LL L+N ILD SK+E+GK+ELE+ +FD++ L ELV+ ++Q
Sbjct: 593 LTQTQLHKVSLAMGSAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGELVESVALQ 652
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+E +LD++ V+GDP R+ QI +NLI+N+IKFT G IIIR W +
Sbjct: 653 AQKKGLELILDVTQLEKPLVQGDPSRIRQIITNLISNAIKFTEQGEIIIRAWFSEV---- 708
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
DNKL V+DTG GI + K + +F
Sbjct: 709 --------------------------------DNKLRFHCSVEDTGIGIPEDKADRLFAK 736
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
F Q D STTRK+GGTGLGL+IVR L M G+I V + G+ + ++ L
Sbjct: 737 FSQVDASTTRKYGGTGLGLAIVRQLCELMDGDITVSSRFGHGSQFEFFVTL 787
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 20/134 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
RILL ED + Q+VA +L+K+G T + V +GL A+E L
Sbjct: 964 RILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSH----------------- 1006
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
D +F+LILMDCQMP+MDGY T IR + + + I+A+TA+AM+ D +KCL
Sbjct: 1007 --QDECQFELILMDCQMPEMDGYRTTELIRDGAAGESYQGVKILAMTANAMSGDREKCLN 1064
Query: 1070 VGMNAYLTKPIDSE 1083
GMN YLTKPI E
Sbjct: 1065 AGMNDYLTKPISEE 1078
>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1069
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 166/290 (57%), Gaps = 33/290 (11%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G IL +++ ++ EL +A+ +AEA++ KS+F+ANMSHE+RTPM +IG+
Sbjct: 294 GRRMILAAARDITERKRIEEEL---REAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGM 350
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
E+L D LT EQ I+ S ALL +LN ILD SK+E+G++ LE F++ KE+E
Sbjct: 351 AELL-LDTPLTPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVE 409
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E+V + + + +E + + +P ++GDP R+ Q+ +NLI N+IKFT G +++
Sbjct: 410 EVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVV-- 467
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
++ SK P + ++ L FEV D+G GI +
Sbjct: 468 ---SVSLSKEEKSAPAGER----------------------GGEIELRFEVKDSGIGIQE 502
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 674
+ + +FE+F Q D STTR++GGTGLGL+I R LV MGGEI + K+SP
Sbjct: 503 EQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGL--KSSP 550
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL-NRMLAAESSRRRSLLQGSPSE 1010
ILLAED P+ Q VA +L+K+G V + +G +A++ L + SS R GSP +
Sbjct: 767 ILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKK 826
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR--NIPIVALTAHAMNADEKKCL 1068
++ +LMD QMPKMDG EAT IR E E R PI+A++AHAM D ++ L
Sbjct: 827 -----KYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPRTPIIAMSAHAMQEDRERAL 881
Query: 1069 GVGMNAYLTKPIDSERMVSTILRL 1092
GM+ Y++KP+ E++ + R
Sbjct: 882 KAGMDHYISKPVKKEQLKEALERF 905
>gi|392307426|ref|ZP_10269960.1| histidine kinase [Pseudoalteromonas citrea NCIMB 1889]
Length = 920
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 191/696 (27%), Positives = 296/696 (42%), Gaps = 143/696 (20%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK-SDDQLTNE 457
E K+RA +A + AE +N KS FL+ MSHELRTPM IIG L++L D+ L +
Sbjct: 362 EEKVRARTAELDNALKHAETANKSKSDFLSMMSHELRTPMNVIIGALDLLTLQDNNLEEQ 421
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
+ I S+ L+ +LN ILD++K+E+GK+EL+ +FDL + + ++ +F
Sbjct: 422 ELLDTASI--SANNLVSILNDILDITKIEAGKLELDCVDFDLSELIYNILVVFGPVARAK 479
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
V + S +P + D RV Q+ NLI+N+IKF C N D +
Sbjct: 480 GVNLSVFESTLLPAFINTDDNRVRQVLFNLISNAIKF-----------CGNTDDKAGSVI 528
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKL--ALCFEVDDTGCGIDQSKWETVFESFE 635
D ++ +N+L L V D G GID++ + +F F
Sbjct: 529 INID---------------------WQPENELIHTLIVSVQDNGIGIDKATQKKLFTPFT 567
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
Q D +TTR+ GGTGLGL+I L++ MGG++ V + G+ + + + S KQ
Sbjct: 568 QADKTTTRRFGGTGLGLAICGRLIDLMGGQLDVQSEPLEGSTFTVRIPIWHSQPRKQA-- 625
Query: 696 ADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGF 755
P + L T E + + L T+ +TQ+
Sbjct: 626 --LPLVTITLVTNDENELHTL------HLIKMLNTTR---ITQV---------------- 658
Query: 756 DAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWV 815
+P+SS + L+A+ T Y+++I+ S + QLN L A+ +
Sbjct: 659 -SPWSSLKTLEAQQT---------YILIIN-------SPYEQTQLNILKHIQNNAII--L 699
Query: 816 VNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGE 875
+N +PIK IV P I L T I + +R++++
Sbjct: 700 INGDNLAPIK--------RIVHNVP------ISFLSTQTFFSIKKLLDRLNNS------- 738
Query: 876 EIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCS 935
A Y+A C +F ++ E H + ER + P
Sbjct: 739 ------AIYAAPN-----MCEADFDLNLDATANIDEEPSHHNI--ERLTSAADHNANP-P 784
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
+ + N + ILL ED P Q + K L K+G T + +G L
Sbjct: 785 ALITPKNLEVAHSSATILLVEDNPFNQKLMTKQLTKLGYTCDIAQNG---------ELGL 835
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
+ +S + LIL DC MP+MDGYE T IR+ E G IPI+A+
Sbjct: 836 SQWQEKS--------------YTLILTDCHMPEMDGYEMTELIRQKEQRLGIAPIPIIAV 881
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
T AM D CL GM+ +++KPI ++ + I R
Sbjct: 882 TGAAMKGDRDYCLSKGMSDFISKPITLDKFKTVIGR 917
>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Length = 1721
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 154/282 (54%), Gaps = 12/282 (4%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A ++A A+ KS+FLANMSHE+RTPM I+G+ +L + +LT EQ ++ + A
Sbjct: 1270 ATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLL-ETELTGEQRRFAEIVRNNGDA 1328
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ELE +F L K LE L SVQ +E + D+ P
Sbjct: 1329 LLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIELIYDIEPGTPS 1388
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR---GWCENLDTSKNTAEFPTDRKKFGRA 588
+VRGDPGR+ QI +NL+ N+IKFT G + ++ G DT T D K
Sbjct: 1389 HVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVAADTVAETEAGAPDVK----- 1443
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
+ + +++ + + L F V DTG GI K ET+FESF Q D S TR GGT
Sbjct: 1444 ---STEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFESFTQADSSITRNFGGT 1500
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
GLGL+I R L +GG++ V G+ A E+
Sbjct: 1501 GLGLTISRKLAGMLGGKLWVTSNPGAGSTFAFTARFEAPEEA 1542
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 20/134 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+ RIL+ +D +++ + L GA+V+ ++ + RR+ +G
Sbjct: 1554 LDRARILVVDDNATNRLILNRTLTGYGASVTEADSAIRGLFEF----------RRAADEG 1603
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+P F L L+DC+MP MDG+ + K+ G I+ LT+ + D +K
Sbjct: 1604 NP--------FRLALIDCRMPGMDGFGLAERMHKAPVRTGTTE--IMMLTSDNRSGDLEK 1653
Query: 1067 CLGVGMNAYLTKPI 1080
C +G++ YL KPI
Sbjct: 1654 CRNLGISRYLIKPI 1667
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 157/264 (59%), Gaps = 28/264 (10%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ +AEA++ KS+F+ANMSHE+RTPM +IG+ E+L D LT EQ I+ S
Sbjct: 621 EAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELL-LDTPLTPEQREYARTIRSSGE 679
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL +LN ILD SK+E+G++ LE F++ KE+EE+V + + + +E + + +P
Sbjct: 680 ALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVP 739
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
++GDP R+ Q+ +NLI N+IKFT G +++ +A + KK
Sbjct: 740 PLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVV------------SASLSKEEKK------ 781
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+A ++ L FEV D+G GI + + + +FE+F Q D STTR++GGTGL
Sbjct: 782 -------KSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGL 834
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSP 674
GL+I R LV MGGEI + K+SP
Sbjct: 835 GLAISRQLVEMMGGEIGL--KSSP 856
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL-NRMLAAESSRRRSLLQGSPSE 1010
ILLAED P+ Q VA +L+K+G V + +G +A++ L + SS R GSP +
Sbjct: 1073 ILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKK 1132
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR--NIPIVALTAHAMNADEKKCL 1068
++ +LMD QMPKMDG EAT IR E E R PI+A++AHAM D ++ L
Sbjct: 1133 -----KYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPRTPIIAMSAHAMQEDRERAL 1187
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLT 1093
GM+ Y++KP+ E++ + R
Sbjct: 1188 KAGMDHYISKPVKKEQLKEALERFV 1212
Score = 39.7 bits (91), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEK---VGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
L GLR+L+ +D + + C+ LE +V + ++ +EA LA+ SS
Sbjct: 906 LAGLRVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLASSSSG---- 961
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR-----KSESEHGARN-IPIVALTA 1057
+DL+++D QMP+ DG E I+ + E GA + + ++ LT+
Sbjct: 962 -------------YDLVILDMQMPETDGLELARRIKSRLQEEEEKRGGAFSALRLMLLTS 1008
Query: 1058 HAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
EK + A L KP+ ++ I L + E
Sbjct: 1009 MDPQTKEKIKASGTVEACLQKPVRQSQLYDAIATLFQKKKEE 1050
>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 940
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 182/342 (53%), Gaps = 44/342 (12%)
Query: 385 GCICILILT-NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIG 443
G I LI T N ++++ K EL A+ +AEA+N KSQF+ANMSHE+RTPM I G
Sbjct: 286 GNIMYLICTANDITEQRKAETELYK---AKEQAEAANIAKSQFIANMSHEIRTPMNGIFG 342
Query: 444 LLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
LE+L+S D L+ EQ + + K +S LL ++N ILD SK+E+ K+ +EN +F+L+ +
Sbjct: 343 FLELLQSTD-LSTEQREFIREAKSASDILLDIVNDILDFSKIEAKKLTMENIKFNLRTTI 401
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
E+ V + + + + +E + +P V GDP R+ QI +NLI+N++KFT+ G I +
Sbjct: 402 EDAVSLIAPKAATKGIELYAMIKSGVPEEVIGDPSRLRQILNNLISNAVKFTTEGEISV- 460
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC-FEVDDTGCGI 622
+ E+N++AL FEV DTG GI
Sbjct: 461 -----------------------------------SVSYLEEENEMALLNFEVKDTGIGI 485
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
+ +F+SF Q D STTRK+GGTGLGL+I LV MGGEI G+ + +
Sbjct: 486 RKEDINKIFKSFSQADASTTRKYGGTGLGLAICNELVKMMGGEIWAQSVFGEGSTFKFNV 545
Query: 683 LLG-ASSESKQIYDAD-FPNTVVVLATVGSMERMIISQWLRK 722
L A +KQ +D + F N V++ R I S L K
Sbjct: 546 RLKIAKRANKQKFDFEKFKNINVLIVDDNENNRNIFSSHLEK 587
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 25/139 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED + + + ++L+ T V +G A++A+++
Sbjct: 713 KILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAVSK------------------- 753
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+D++ MDCQMP MDGYE+T IR E + ++ I+A+TA+AM D +KC+
Sbjct: 754 ----KDYDVVFMDCQMPVMDGYESTARIRHLEGDK--KHTTIIAMTANAMAGDCEKCIKA 807
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+AY++KPID ++M I
Sbjct: 808 GMDAYISKPIDFDKMFKMI 826
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+ ++ L+D QMP M+GYE +R + A++I ++ LT+ D K G +
Sbjct: 614 KINIALIDYQMPGMNGYELATTLR---TMPFAKDIQLILLTSVTQKVDIKSIKEYGFSTL 670
Query: 1076 LTKPIDSERMVSTILR 1091
L KP+ + ++S I +
Sbjct: 671 LAKPVKKDDLLSCIAK 686
>gi|414152783|ref|ZP_11409112.1| Multi-sensor hybrid histidine kinase [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455973|emb|CCO07014.1| Multi-sensor hybrid histidine kinase [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 1290
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 156/273 (57%), Gaps = 35/273 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AE ++ KS+FLANMSHE+RTPM I+G E+L + LT+EQ +V I++
Sbjct: 555 ARLAAEQASRAKSEFLANMSHEIRTPMNGILGFAEVLLQQN-LTHEQTESVKVIQQCGEQ 613
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+ESGK+ LE T+F L+K + E V + + + NVE ++ L ++P
Sbjct: 614 LLELINDILDLSKIESGKLVLERTDFSLRKLIHEAVSLVEPKLAARNVEMIIQLQQDLPD 673
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+GDP R+ QI +NL++N+ KFT G++ I E P
Sbjct: 674 YFKGDPTRIRQILNNLLSNAAKFTHRGYVKI----------SVAGEGPV----------- 712
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++N++ L F V+DTG GI + K E +F++F Q D STTRK+GGTGLG
Sbjct: 713 -------------QENEIKLKFIVEDTGIGIPKDKLELIFQAFTQADGSTTRKYGGTGLG 759
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
L+I R L MGG I V + + G+ L L L
Sbjct: 760 LTISRNLAQLMGGRITVASEENSGSQFTLTLPL 792
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 85/156 (54%), Gaps = 31/156 (19%)
Query: 934 CSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML 993
S + Q+R+ RILLAED Q + ++L V+V +GLQA++AL R
Sbjct: 1058 AGKSMQQAGQQRV----RILLAEDNHFNQRLMVQLL-AAEFQVTVAENGLQALQALER-- 1110
Query: 994 AAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053
RFDLILMD QMP MDGYEAT +IR S+ ++IPI+
Sbjct: 1111 ---------------------NRFDLILMDMQMPVMDGYEATRQIR---SQKKYQDIPII 1146
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
ALTAHAM DE+KCL G + YL KP+ + ++ TI
Sbjct: 1147 ALTAHAMKGDEEKCLAAGCDGYLAKPVKRDVLLRTI 1182
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 161/291 (55%), Gaps = 38/291 (13%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+ +++ E L+ A++ AE KS+FLA+MSHE+RTPM +IG+L +L+ D+
Sbjct: 534 GIQQDITAAVEAKKELEQAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLE-DEH 592
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT Q V S+ +LL L+N ILD SK+E+GK+ELE+ +FD++ L EL++ ++Q
Sbjct: 593 LTQTQLHKVSLAMGSAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGELIESVALQ 652
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+E +LD++ V+GDP R+ QI NLI+N+IKFT G IIIR W +
Sbjct: 653 AQKKGLELILDVTQLEKPLVQGDPSRIRQIIINLISNAIKFTEQGEIIIRAWFSEV---- 708
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
DNKL V+DTG GI + K + +F
Sbjct: 709 --------------------------------DNKLRFHCSVEDTGIGIPEDKADRLFAK 736
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
F Q D STTRK+GGTGLGL+IVR L M G+I V + G+ + ++ L
Sbjct: 737 FSQVDASTTRKYGGTGLGLAIVRQLCELMDGDIAVSSRFGHGSQFEFFVTL 787
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 20/134 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
RILL ED + Q+VA +L+K+G T + V +GL A+E L
Sbjct: 964 RILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSH----------------- 1006
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
D +F+LILMDCQMP+MDGY T IR + + + I+A+TA+AM+ D +KCL
Sbjct: 1007 --QDECQFELILMDCQMPEMDGYRTTELIRDGAAGESYQGVKILAMTANAMSGDREKCLN 1064
Query: 1070 VGMNAYLTKPIDSE 1083
GMN YLTKPI E
Sbjct: 1065 AGMNDYLTKPISEE 1078
>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 957
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 154/269 (57%), Gaps = 41/269 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTN 456
E++LR AR AEA+N KS FLANMSHE+RTPM AIIGL ++L+ D
Sbjct: 264 EIRLRQLNTELAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGA 323
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
EQ + V ++ LL+++N +LDLSK+ESGK+ELE+ + DL + L + + S +
Sbjct: 324 EQLAKVA---DAADHLLQIINDVLDLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHE 380
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
+E VLD +D++PR +RGDP R+ Q NL+ N+IKFT G +I+RG
Sbjct: 381 KGLELVLD-TDHLPRTLRGDPTRLSQALLNLLTNAIKFTDHGSVILRG------------ 427
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
KL+ A+ + + F V DTG G++ + E +F +FEQ
Sbjct: 428 --------------QKLQDGADG---------VHVRFSVQDTGIGVEADQVEALFLAFEQ 464
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
GD STTR+HGGTGLGL+I R L MGGE
Sbjct: 465 GDSSTTRRHGGTGLGLAITRHLAQLMGGE 493
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 26/149 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G +LLAED P+ Q VA +L+ G V V DG QA+ +
Sbjct: 678 GAPVLLAEDNPINQEVASSLLQLAGLQVDVADDGAQAL--------------------AM 717
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+ET D + ILMD QMP MDG +AT IR G +PI+A+TA+A D CL
Sbjct: 718 AETTD---YRAILMDMQMPVMDGLQATRAIRALPRAAG---LPIIAMTANAFGEDRAACL 771
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GMN ++ KP++++ + +T+LR P
Sbjct: 772 AAGMNDHIAKPVNAQVLYATLLRWLDAHP 800
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GLR+LLA+D + +++ +G V V G QA+ AL +
Sbjct: 527 LHGLRVLLADDLEPAREAMAEMMRSIGLRVDAVASGEQALAALQDV-------------- 572
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+PD R L+L+D MP +DG E R+ + P+V ++A +
Sbjct: 573 ----SPDPYR--LVLLDWCMPGLDGIETA---RRMAQLALPQRPPVVLVSAQDDDTLPAL 623
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
VG+ L KP+ + + ++ L +
Sbjct: 624 ARTVGIGTVLLKPLTASSLHDAVIGLLQ 651
>gi|449138838|ref|ZP_21774089.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
gi|448882612|gb|EMB13175.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
Length = 848
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 172/303 (56%), Gaps = 20/303 (6%)
Query: 390 LILTNGVSKEMK--LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+I T G+S+++ R+E H +A R A+A+N KS+FLANMSHE+RTPM A+IG+ ++
Sbjct: 245 IIGTFGISRDITDLKRSEAALH-EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADL 303
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L +Q V I++SS LLRL+N ILD SK+E+ ++ELE+ F L K +E +
Sbjct: 304 L-SQTKLDADQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLSKTIESTL 362
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
FS + S +E D+S +P + GDPGRV Q+ +NLI N+IKFT G + +R
Sbjct: 363 RSFSFKASEKGLELQCDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVR---- 418
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
E P DR L +N + D+ + L V D+G GI ++
Sbjct: 419 ---VEVLRREEPDDR---------DLAATSNGRESPERDDMVELRLSVCDSGIGIPPAQQ 466
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+ V F Q D STTR+ GGTGLGLSI R LV MGGE+++ + GT L +
Sbjct: 467 DAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELRLKSEVGVGTTFSFQLKMPVC 526
Query: 688 SES 690
ES
Sbjct: 527 PES 529
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
++ L L +L+AED Q V +L +G S+ DG + + ++ RS
Sbjct: 546 RQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETL-----------TKWRS- 593
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+D++LMD MP MDG EAT IR+ E R+ PIVALTA AM+ D
Sbjct: 594 -----------DSYDVVLMDMHMPVMDGLEATRAIRQEEW-GTERHTPIVALTAAAMSED 641
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
C GM++YLTKPI S ++ + + +P G+
Sbjct: 642 AAACREAGMDSYLTKPIHSRKLRDALAPYQRELPPTDDGS 681
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 159/281 (56%), Gaps = 36/281 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A++KAE + KS FLANMSHE+RTPM AIIG+ + D L +Q V +I+ S+ +
Sbjct: 982 AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQTD-LNKKQSDYVNKIQTSAES 1040
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK++LE TEFDL+ ++ LV + S + ++E ++DL +P
Sbjct: 1041 LLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPT 1100
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ QI NL NN+IKFT G II++
Sbjct: 1101 HLIGDPLRLGQILLNLANNAIKFTDQGEIIVKA--------------------------- 1133
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+L +Q+ D+KL F V DTG G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1134 ELIEQS--------DDKLEARFSVSDTGIGMTEEQMARLFQSFSQADASTTRKYGGTGLG 1185
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
L+I +TL M G I V ++ G+ G SSE Q
Sbjct: 1186 LTISKTLAEMMEGSIWVESESGQGSTFFFTAQFGLSSEIPQ 1226
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 28/177 (15%)
Query: 914 LIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
L+ T+ R + G + + + ++S Q + G RILL ED + Q +A ++L+ VG
Sbjct: 1356 LLDTLSRVMTKEGITNKTNTSNKLDTSIAQG--IAGARILLVEDNAINQEIATELLQMVG 1413
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V+ +G +AV+ L GS FDL+LMD QMP MDGY+
Sbjct: 1414 MDVTTANNGQEAVD----------------LVGSQD-------FDLVLMDIQMPVMDGYQ 1450
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
AT IR + ++PI+A+TA+AM+ D++KCL GMN +L KPI+ ++ ++
Sbjct: 1451 ATQVIRNTGQYD---DLPIIAMTANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALV 1504
>gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
Length = 776
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 154/272 (56%), Gaps = 36/272 (13%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R +A S KS+FLANMSHE+RTP+ I+G+ E+L+ D +L EQ V QI+ S AL
Sbjct: 120 REEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLE-DTRLDEEQRDYVQQIRFSGEAL 178
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L L+N ILD SK+E+GK+ +E EFDL + +E+ V M S+Q ++E V+D+ + +PR
Sbjct: 179 LALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEVPRK 238
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
V+GDP R+ QI NL NN++KFT GH+ +C R +
Sbjct: 239 VKGDPLRIRQILVNLANNAVKFTEKGHV----FC-----------------------RVQ 271
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L Q+ + F V+DTG GI ++K +F F Q D STTR+ GGTGLGL
Sbjct: 272 LVQERKGVA--------WVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGL 323
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+I ++LV M GEI V K G+ L L
Sbjct: 324 AISKSLVEMMKGEIGVRSKEGEGSSFWFLLPL 355
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 32/158 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + Q + IL ++G V + +G +AVE + LA +
Sbjct: 523 ILVAEDHIVNQELFLTILSRLGYRVELAGNGKEAVE---KGLALKP-------------- 565
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
DLI MD QMP+M+GY+A +R+ E P++A+TA A D ++ L G
Sbjct: 566 ------DLIFMDVQMPEMNGYDAARVLREKGYEG-----PVIAVTASAFREDRERALAAG 614
Query: 1072 MNAYLTKPIDSERMVSTILRLT----KNMPSEATGTTR 1105
M+ +L KP + ++ + + K+ P+ + +TR
Sbjct: 615 MSDFLPKPFKKKDLLPVLQKWLSDTGKDRPAPESASTR 652
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LL ED PL + V + L++ + G EAL +M E + R +
Sbjct: 373 LLLVEDYPLTRKVLHRYLQRYFPRIDEASTG---AEALRKM--RERAERGEI-------- 419
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+DL+L+D +P MDG++ E+ S + R +V ++ A+ K L
Sbjct: 420 -----YDLVLVDLTLPGMDGWQFASEVNADRSINDTR---MVLMSPMGEGAEAKMKLLKW 471
Query: 1072 MNAYLTKPIDSERMVSTILRLT 1093
+AYL KP+ + + T+ ++
Sbjct: 472 FDAYLAKPVRKDDLYRTVAKVV 493
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 48/369 (13%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G + ++ R E + L A+ AEA++ K FLANMSHE+RTPM IIG+ E L D +
Sbjct: 574 GTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTE-LALDTE 632
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L +EQ + ++ S+ ALL +LN ILD SK+ESGK+++EN EF L+ L E + +V+
Sbjct: 633 LNSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAVR 692
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+E +L ++ ++P + GDPGR+ Q+ NL+ N+IKFT+SG I + C
Sbjct: 693 AHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQC------- 745
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
LK M + F V DTG GI + K++T+FES
Sbjct: 746 -------------------LKGAPEGQMRMQ--------FSVRDTGIGIARDKFQTIFES 778
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL---LLGASSES 690
F Q D STTR++GGTGLGL+I LV+ MGG I + + G+ L +L S +
Sbjct: 779 FSQADTSTTRRYGGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLSVSPLA 838
Query: 691 KQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPV 750
+ V++A + R ++ + L K+ + TS +E LD ++
Sbjct: 839 EYQQTGRIAGMTVLIADDNATNRRLLQEMLTNWKMHPVVTSNG-------QEALDELARA 891
Query: 751 SSNGFDAPY 759
+++G PY
Sbjct: 892 TASGH--PY 898
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 27/156 (17%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
+QP ++ +S +R L +LLAED + Q +A ++L K+G TV+V +G++AV+
Sbjct: 975 EQPLTTRHSLKEMRR---RLNLLLAEDNAVNQTLATRLLTKLGHTVTVANNGIEAVQ--- 1028
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-ARN 1049
L Q FD ILMD MP+M+GY+AT IR+ E + G +
Sbjct: 1029 ------------LWQNGS--------FDAILMDVDMPEMNGYDATRCIREQEQQLGVGAH 1068
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
I IVA+TAHAM ++CL GM+ YLTKPID+E +
Sbjct: 1069 IRIVAMTAHAMQGAREECLLNGMDGYLTKPIDTEAL 1104
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G+ +L+A+D + + ++L V +G +A++ L R A+ G
Sbjct: 846 IAGMTVLIADDNATNRRLLQEMLTNWKMHPVVTSNGQEALDELARATAS----------G 895
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
P + L L+D QMP MDG+E IR EH + ++ LT+
Sbjct: 896 HP--------YGLALLDLQMPDMDGFELAEHIR----EHPEYLVKTLMMLTSEGQRGHAS 943
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTIL 1090
+C +G+ AYL KPI + I+
Sbjct: 944 RCRELGVAAYLMKPIAQSELFDAIM 968
>gi|395009774|ref|ZP_10393251.1| signal transduction histidine kinase [Acidovorax sp. CF316]
gi|394312173|gb|EJE49382.1| signal transduction histidine kinase [Acidovorax sp. CF316]
Length = 1007
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 154/264 (58%), Gaps = 38/264 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE ++ KS FLANMSHE+RTPM A+IG+ + + D L+ Q + V +I++S
Sbjct: 258 ARARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALTTD-LSPRQRNYVEKIQRSGQH 316
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+GK+E+E +FDL+ L+ + ++ +CS +E + D+ +P
Sbjct: 317 LLGLINDILDFSKIEAGKLEVETVDFDLRGVLDNVANLIGDKCSAKGLELMFDVDPALPD 376
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++RGDP R+ QI N NN++KFT +G I++R T
Sbjct: 377 DLRGDPLRLGQILVNYGNNAVKFTDTGEIVVR--------------------------VT 410
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L++ A+ L L FEV DTG G+ + +F SFEQ D STTRK+GGTGLG
Sbjct: 411 TLQRDADG---------LLLRFEVQDTGIGLTPEQQSRLFRSFEQADTSTTRKYGGTGLG 461
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L+I + L MGGE+ V ++PG
Sbjct: 462 LAISKKLAGLMGGEVGV--DSTPG 483
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 25/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL +D L Q V +L G V V +G A++ L+ Q
Sbjct: 658 IHGARVLLVDDNDLNQQVGADLLGDAGLVVEVAENGQVALDMLH--------------QR 703
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+P +D++LMD QMP MDG AT +R++ + G +P++A+TA+AM++D
Sbjct: 704 AP--------YDIVLMDMQMPVMDGLTATRRLRENPAWAG---LPVLAMTANAMSSDRDS 752
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPID + + S +L+
Sbjct: 753 CLAAGMNGHVAKPIDPDELFSQLLQ 777
>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
Length = 1816
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 159/281 (56%), Gaps = 36/281 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A++KAE + KS FLANMSHE+RTPM AIIG+ + D L +Q V +I+ S+ +
Sbjct: 982 AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAMQTD-LNKKQADYVNKIQTSAES 1040
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK++LE TEFDL+ ++ LV + S + ++E ++DL +P
Sbjct: 1041 LLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPT 1100
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ QI NL NN+IKFT G II++
Sbjct: 1101 HLIGDPLRLGQILLNLANNAIKFTDQGEIIVKA--------------------------- 1133
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+L +Q+ D+KL F V DTG G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1134 ELIEQS--------DDKLEARFSVSDTGIGMTKEQMARLFQSFSQADASTTRKYGGTGLG 1185
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
L+I +TL M G I V ++ G+ G SSE Q
Sbjct: 1186 LTISKTLAEMMEGSIWVESESGQGSTFFFTAQFGLSSEIPQ 1226
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 28/177 (15%)
Query: 914 LIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
L+ T+ R + G + + + ++S Q + G RILL ED + Q +A ++L+ VG
Sbjct: 1356 LLDTLSRVMTKEGITNKTNTSNKLDTSIAQG--IAGARILLVEDNAINQEIATELLQMVG 1413
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V+ +G +AV+ L GS FDL+LMD QMP MDGY+
Sbjct: 1414 MDVTTANNGQEAVD----------------LVGSQD-------FDLVLMDIQMPVMDGYQ 1450
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
AT IR + ++PI+A+TA+AM+ D++KCL GMN +L KPI+ ++ ++
Sbjct: 1451 ATQAIRNTGQYD---DLPIIAMTANAMSGDKEKCLAAGMNDHLPKPINPNQVFQALV 1504
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 169/328 (51%), Gaps = 26/328 (7%)
Query: 380 CILVIGCICILILTNGVSKEMKLRAELISHLDARR-------------KAEASNNYKSQF 426
CI V C+L +++ + +AE H AR+ +A+A++ KS+F
Sbjct: 363 CIEVNAAPCVLATAIDITE--RRQAEEKLHETARQMERKTVELDAALTRADAASKAKSEF 420
Query: 427 LANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVE 486
LANMSHE+RTPM +IG+ +L D L Q ++ S ALL LLN ILD SK+E
Sbjct: 421 LANMSHEIRTPMNGVIGMTGLLLETD-LNETQRRYAETVRSSGQALLALLNDILDFSKIE 479
Query: 487 SGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSN 546
SGK+ELE FDL+ L+ M + + +E + ++P N+ GDPGR+ QI +N
Sbjct: 480 SGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTN 539
Query: 547 LINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG-RAFRTKLKQQANNAMNFRE 605
L+ N++KFT G +++R + E R++ G ++ T K Q +
Sbjct: 540 LVGNAVKFTERGEVVVR---------VSIQESGVRRQETGDKSQETGDKSQETGDKSQES 590
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
+ L F V DTG GI + K +F+SF Q D S TRK GGTGLGL+I R L MGGE
Sbjct: 591 EEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGE 650
Query: 666 IKVVKKNSPGTLMQLYLLLGASSESKQI 693
+ V GT + L + QI
Sbjct: 651 VGVESIEGQGTTFWFTVPLSLAETCDQI 678
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 75/166 (45%), Gaps = 58/166 (34%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILLAED Q VA +L+ G + V +GL+A++AL
Sbjct: 842 RILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALK-------------------- 881
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIR----------------KSESEHGA------- 1047
T +DL+LMD QM +MDG AT IR KSES++ +
Sbjct: 882 ---TVPYDLVLMDVQMLEMDGLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNP 938
Query: 1048 ------------RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
IPI+ALTAHAM ++CL GM+ YLTKP++
Sbjct: 939 LIPQSLNSRIPEFRIPIIALTAHAMQGYREQCLEAGMDDYLTKPLE 984
>gi|386346558|ref|YP_006044807.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411525|gb|AEJ61090.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 785
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 161/291 (55%), Gaps = 43/291 (14%)
Query: 386 CICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
+ + +T+ E LR E R +A S KS+FLANMSHE+RTP+ I+G+
Sbjct: 110 LLGVFDITDQKVTEEHLRKE-------REEAIRSVQSKSRFLANMSHEIRTPLHTILGMT 162
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
E+L+ D +L EQ V QI+ S ALL L+N ILD SK+E+GK+ +E +FDL + +E+
Sbjct: 163 ELLE-DTRLDEEQRDYVQQIRFSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQ 221
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
V M S+Q ++E V+D+ + +PR V+GDP R+ QI NL NN++KFT GH+ +
Sbjct: 222 AVGMVSLQAHKKHLEVVVDIGEEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHV----F 277
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
C R +L QQ + F V+DTG GI ++
Sbjct: 278 C-----------------------RVQLVQQRKGVA--------WVAFTVEDTGIGIPEN 306
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
K +F F Q D STTR+ GGTGLGL+I ++LV M GEI V + G+
Sbjct: 307 KKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGS 357
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + Q + IL ++G V + +G +AVE + LA +
Sbjct: 532 ILVAEDHIVNQELFFTILSRLGYRVELAGNGKEAVE---KGLALKP-------------- 574
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
DLI MD QMP+M+GY+A +R EHG P++A+TA A D ++ L G
Sbjct: 575 ------DLIFMDVQMPEMNGYDAARVLR----EHGYEG-PVIAVTASAFREDRERALAAG 623
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ +L KP + ++ +
Sbjct: 624 MSDFLPKPFKKKDLLPVL 641
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LL ED PL + V + L++ + D EAL +M E + R +
Sbjct: 383 LLLVEDYPLTRRVLHRYLQRYFPHID---DASTGAEALRKM--RERAERGEI-------- 429
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+DL+L+D +P MDG++ E+ S + R +V ++ A+ K L
Sbjct: 430 -----YDLVLVDLTLPGMDGWQFASEVNADRSINDTR---MVLMSPMGEGAEAKMKLLKW 481
Query: 1072 MNAYLTKPIDSERMVSTILRLT 1093
+AYL KP+ + + T+ R+
Sbjct: 482 FDAYLAKPVRKDDLYRTVARVV 503
>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1022
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 160/291 (54%), Gaps = 36/291 (12%)
Query: 395 GVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
GV++++ L+ R+ AEA++ KS FLA MSHE+RTP+ A++G+ E L S++++
Sbjct: 322 GVARDVTENLRLLEADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAE-LASNEKM 380
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
+ I S AL+ L+NRILD SK+E+ KMELE FDL LE++ D ++
Sbjct: 381 NQNLKKIIETITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEA 440
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+E +L ++ IP V+GDPGR+ Q+ +NLI N+IKFTS G + ++
Sbjct: 441 YKKGLEFILHINPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVK----------- 489
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
AE T R D K + F + DTG GI + K +FE+F
Sbjct: 490 -AELET-----------------------RTDEKAIIKFHIQDTGIGIPEEKRGLIFEAF 525
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
Q D STTRK+GGTGLG +I + +V MGGEI + + G++ ++L
Sbjct: 526 TQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESREGCGSIFWFTVVLA 576
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 46/198 (23%)
Query: 910 RREDLIHTMFRERHQIGSSRRDQPCSSSN-------SSSNQKRILEGLRILLAEDTPLIQ 962
RR+DL + R +G +R+D P S S N+ I ILL ED P Q
Sbjct: 705 RRDDLCKVV---RVVLGLARQDLPDQDSQLVTRHFASELNRSNI----SILLVEDYPANQ 757
Query: 963 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022
+A + L G V++ +G +AVEA R+++ FDL+ M
Sbjct: 758 FIAMEHLTSDGYRVALAENGQKAVEAF---------RKKT--------------FDLVFM 794
Query: 1023 DCQMPKMDGYEATIEIRKSESEHGARN---------IPIVALTAHAMNADEKKCLGVGMN 1073
D QMP MDGYEAT +IR E+E+ PI+A+TAHA N +KCL M+
Sbjct: 795 DIQMPIMDGYEATKQIRALEAENAGEGNGDGSKKERCPIIAMTAHAFNGYREKCLEADMD 854
Query: 1074 AYLTKPIDSERMVSTILR 1091
Y+TKPI + ++ R
Sbjct: 855 DYITKPISKKELLEIAAR 872
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G +IL+ E+ + V L G V P+ +E R L ++SS+
Sbjct: 594 GKKILVIENNLSYREVIQSYLLSWGGIVDTAPN----IEEAIRYLESQSSQ--------- 640
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
E P LI+MD +P + + +++S G IP++ LT D KKC
Sbjct: 641 GEKPA-----LIVMDLNLPSLIDLDLAGSLKRSPLMKG---IPLIVLTNVGRMGDGKKCR 692
Query: 1069 GVGMNAYLTKPI---DSERMVSTILRLTK-NMPSE 1099
+G++ YL KP+ D ++V +L L + ++P +
Sbjct: 693 ELGIDGYLAKPVRRDDLCKVVRVVLGLARQDLPDQ 727
>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1050
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 161/273 (58%), Gaps = 27/273 (9%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++A+ +AEA+ KS+FL++MSHELRTPM AIIG+ E+L +D +L +Q + ++ +
Sbjct: 392 IEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVL-ADTELGRDQVHFIRILQSAG 450
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD+SK+ESG++ LE+ +FDL + +EE+ DM +++ ++ L L +
Sbjct: 451 DDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDLALRLGRYL 510
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P+ + GDP R+ QI NLI N++KFT G++ + E + + AE P
Sbjct: 511 PKRIVGDPHRLRQILINLIGNAVKFTEQGYVSVEVSLEE-TSVPSAAEKPP--------- 560
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+++AL F + DTG GI + K E +FESF Q D STTR++GGTG
Sbjct: 561 ----------------GSQVALVFSIRDTGIGIPEDKQEQIFESFTQVDSSTTRQYGGTG 604
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGL I R L MGG I+V G+L ++L
Sbjct: 605 LGLGISRRLATLMGGTIEVHSTPGLGSLFAVHL 637
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 933 PCSSSN----SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
P +SS ++ + R L RIL+ ED+P + + L + V +G +A+E
Sbjct: 788 PGTSSGEQGATTEDDGRSLPAARILVVEDSPHNRTLIQAFLARTPLRVDYAENGAEAIEK 847
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
N + L+LMD QMP MDGYEAT IR+ E G
Sbjct: 848 WN-----------------------ANAYTLVLMDMQMPVMDGYEATTAIREQERTEGRA 884
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPI---DSERMVSTIL 1090
PIVALTA A+ AD CL G +A+L KPI D RM+ T L
Sbjct: 885 PTPIVALTAFALTADVDTCLAAGCDAHLAKPIRKRDFFRMLHTHL 929
>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
Length = 945
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 166/286 (58%), Gaps = 42/286 (14%)
Query: 385 GCICILILT-NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIG 443
G I LI T N ++++ EL A+ +AEA+N KS+FLANMSHE+RTPM I G
Sbjct: 287 GNIQYLICTANDITEQRLAEKELYK---AKEQAEAANTAKSRFLANMSHEIRTPMNGIFG 343
Query: 444 LLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
LE+L++ + L+ EQ + + K +S LL ++N ILD SK+E+ K+ +E +F+L+ +
Sbjct: 344 FLELLQATN-LSLEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSI 402
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
E+ V + + + + N+E ++ N+P V GDP R+ Q+ +NLI+N++KFTS G I ++
Sbjct: 403 EDAVSLLAPKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVK 462
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA-LCFEVDDTGCGI 622
C +E+NK+A L FEV DTG GI
Sbjct: 463 VDC------------------------------------LKEENKIAFLNFEVKDTGIGI 486
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+ T+F+SF Q D STTRK+GGTGLGL+I LV MGG+I+V
Sbjct: 487 RKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQV 532
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 25/144 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED + + + IL+ T V +G +A++A++
Sbjct: 717 KILLVEDNVMNRKIVINILKLHDMTCDVAVNGSEALKAVSE------------------- 757
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+D++ MDCQMP MDGYE T +IR E + ++ I+A+TA+AM D +KC+
Sbjct: 758 ----KDYDVVFMDCQMPVMDGYECTAKIRILEGDK--KHTTIIAMTANAMEGDSEKCIEA 811
Query: 1071 GMNAYLTKPIDSERMVSTILRLTK 1094
GM+AY++KPI+ + M I TK
Sbjct: 812 GMDAYISKPINFDTMFKMIEANTK 835
>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
Length = 2035
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 171/333 (51%), Gaps = 38/333 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE + KS FLANMSHE+RTPM AIIG+ L +L+N+Q + + +I +S
Sbjct: 1301 AKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAH-LALQTELSNQQRNYLVKIDSASKH 1359
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GKM E+ +F L+ +E L D+ ++ +E + D+ NIP
Sbjct: 1360 LLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIETNIPT 1419
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDP R+ QI NL+NN+IKFT+ G I R F
Sbjct: 1420 ALRGDPLRLGQILINLVNNAIKFTAQGEI--------------------------RLFVK 1453
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L Q+A ++ L FEV DTG GID+++ +FE+F Q D STTR+ GG+GLG
Sbjct: 1454 LLAQEA---------KQVHLLFEVHDTGIGIDEAQQAKLFEAFSQADLSTTREFGGSGLG 1504
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK--QIYDADFPNTVVVLATVG 709
L+I + LV M G+I V G+ E K Q D D N +++
Sbjct: 1505 LAICKHLVEMMQGKIWVKSTLGEGSTFSFSAQFELQEEQKKPQFNDEDVRNLRILIVDDN 1564
Query: 710 SMERMIISQWLRKKKVSTLETSEWHGLTQILRE 742
+ R I+ LR + + H +L+E
Sbjct: 1565 ASAREILENILRSFHFNVHSVCDGHHALSLLKE 1597
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 28/145 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++LL ED + Q +A +ILE+ G + V G +A+E + +
Sbjct: 1703 LRGAKVLLVEDNIINQEIAKEILEREGMDIVVANHGKEALEWIEK--------------- 1747
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD +LMDCQMP MDG+EAT +R+ G +PI+A+TA+AM D+++
Sbjct: 1748 --------ESFDGVLMDCQMPVMDGFEATRLMRE-----GGHTLPILAMTANAMEGDKER 1794
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN +++KPID ++ T+ +
Sbjct: 1795 CLACGMNDHISKPIDMAKLFITMAK 1819
>gi|406889193|gb|EKD35451.1| hypothetical protein ACD_75C01906G0001, partial [uncultured
bacterium]
Length = 770
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 156/279 (55%), Gaps = 36/279 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+N KS FLA MSHE+RTPM AIIG+ + D LT +Q + + S+ +
Sbjct: 277 AKEAAEAANTAKSDFLARMSHEIRTPMNAIIGMTHLALQTD-LTAKQRDYIKKAHGSAIS 335
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GKMELEN +F L + LE+L ++F+++ + N+E ++ + ++P
Sbjct: 336 LLDIINDILDFSKIEAGKMELENIDFSLDEVLEQLSNVFAMKAAEKNIELLIHVDPDVPT 395
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDP R+ QI NL N++KFT +G ++I S N E
Sbjct: 396 FLRGDPLRLRQILINLTGNALKFTQAGEVVI---------SINQLE-------------- 432
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ K+ L F V DTG G+ +++ +F SF Q D STTRK+GGTGLG
Sbjct: 433 ------------SDGQKIRLQFAVADTGIGMSETQLAKLFNSFSQADGSTTRKYGGTGLG 480
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
L I + LVN M GEI V + G+ L SS S
Sbjct: 481 LVICKRLVNMMQGEICVESQLDSGSTFHFSALFSTSSRS 519
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 28/136 (20%)
Query: 932 QPCSSSNSSSNQ-KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
Q C+ + S+ + R + G ++LL ED + Q VA + LE+ V+V +G + V
Sbjct: 662 QACTPHDQSALELTRPIWGSKVLLIEDNAINQQVATEYLEQACIQVTVADNGAKGV---- 717
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
+ +E+ D FDL+LMD QMP+MDGY AT IR EHG +
Sbjct: 718 ----------------ALAESGD---FDLVLMDIQMPEMDGYTATRLIR----EHGKVTL 754
Query: 1051 PIVALTAHAMNADEKK 1066
PI+A+TA+AM D +K
Sbjct: 755 PIIAMTANAMAGDREK 770
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
++GLR L+ +D+ +V+ +IL A+E+ + +A +S ++
Sbjct: 530 MQGLRTLIVDDS----VVSRRILR-------------YALESFSMSIATANSGEEAIAA- 571
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
D P + LILMD +M MDG EA+ R+ ++ A P I+ +TA+ K
Sbjct: 572 VADAPADNP-YRLILMDMEMVGMDGIEAS---RQILADAPADRCPKIIMVTAYGQEKVAK 627
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTIL 1090
+ + G+ +L KP+ + I+
Sbjct: 628 EAVYAGIQGFLVKPVSKAALFDAIM 652
>gi|334117454|ref|ZP_08491545.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460563|gb|EGK89171.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1830
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 169/289 (58%), Gaps = 14/289 (4%)
Query: 391 ILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
+L V ++ +L AE LD AR+ AE +N KS+FLA MSHE+RTPM A+IG+ +L
Sbjct: 1010 LLETEVQRQRQL-AEQNEALDQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLL 1068
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
D +LT EQ V I+ S ALL ++N ILD SK+ESGK++LE + F+LQ +EE +++
Sbjct: 1069 -DMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLDLERSPFELQNCIEESLEL 1127
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+ + S +E + D++P+N+ GD R+ QI NL+ N++KFT SG I++ C
Sbjct: 1128 LAPRASEKGLELAYFIDDSVPKNILGDVTRLRQILVNLLGNAVKFTESGEIVV--CCTAR 1185
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQ--ANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ A DR L Q A N + + F V DTG GI +
Sbjct: 1186 QIEQVAANSSPDRINI-------LAPQPLAINQGELARSRQYEIQFAVQDTGIGIPPDRM 1238
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+ +F++F Q D STTR +GGTGLGL+I + L + MGG + VV + +PG+
Sbjct: 1239 DRLFKAFSQVDASTTRHYGGTGLGLAISQRLSDMMGGTMWVVSQVTPGS 1287
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 27/151 (17%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
++NS+ +RILLAED + Q VA +L+++G + +GL+ +EAL R
Sbjct: 1529 AANSAGQDAANSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANGLEVLEALKRQ--- 1585
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
+D++LMD QMP MDG EAT R+ E A P I+A
Sbjct: 1586 --------------------SYDVVLMDVQMPNMDGLEAT---RRICQEWPANKKPRIIA 1622
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
+TA+AM D +KCL GM+ Y+TKP+ E +
Sbjct: 1623 MTANAMQGDREKCLEAGMDDYITKPVRREEL 1653
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 177/345 (51%), Gaps = 29/345 (8%)
Query: 412 ARR---KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKS 468
ARR +AEA++ KS+FLAN+SHE+RTP+ A+IG+ +L D LT EQ I+ S
Sbjct: 193 ARRLAVEAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLL-DSALTAEQREFAETIRIS 251
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
ALL LLN +LD SK+E+G++ELE FD K +EE V +F+ Q S +E VL +
Sbjct: 252 GEALLSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIELVLLPENV 311
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P V GDP R+ QI NL+NN++KFT G I++ W E + AE
Sbjct: 312 LPDRVMGDPVRLRQILINLVNNAVKFTHEGEIVVSVWVEWDAAMSSPAE----------- 360
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
AM E L F V DTG GI + +F++F Q D STTRK+GG+
Sbjct: 361 -----------AM---ESVPCTLRFSVRDTGVGIPAERRGRLFQAFSQVDSSTTRKYGGS 406
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATV 708
GLGL+I R L MGG++ V + G+ + A + + ++ F ++++
Sbjct: 407 GLGLAIARNLCRLMGGDMWVESEPGVGSTFFFTVRSEAVAVTPSYQESPFAGRILLVLDD 466
Query: 709 GSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSN 753
R W + + + + QIL E L ++ V +
Sbjct: 467 NRAARKAFMFWAERLGMKAVAVASEEEAFQILEEALPDLALVDGD 511
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 31/162 (19%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R S +++ Q+R L ILL ED P+ Q VA +L ++G T + +G +AV A
Sbjct: 587 KRRSIASRLDATLGQRRPLS---ILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEAVAA 643
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
R +DL+LMD MP+MDG+EA IR+ R
Sbjct: 644 QQRR-----------------------EYDLVLMDLHMPEMDGFEAAQRIRRLP----LR 676
Query: 1049 NIPIV-ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
P++ A+TA AD GM+ + KP+ E++++ +
Sbjct: 677 RQPLIYAMTAAVTEADLAGVREAGMDGVIPKPVRVEQLIAGL 718
>gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 737
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 174/307 (56%), Gaps = 43/307 (14%)
Query: 405 ELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVC 463
+L++ LD A+++AE+++ KSQFLAN SHE+RTPM AIIG+ +++ + ++T EQ+ +
Sbjct: 49 QLVAELDRAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVL-NTKVTPEQHRALT 107
Query: 464 QIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVL 523
+K +S +LL L+N +LDLSK+E+G+ LE FDL+ E+E V + + +E +
Sbjct: 108 IVKNASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTLGLTAAEKGLELIC 167
Query: 524 DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRK 583
L ++PR+++GDP R+ Q+ NL+ N++KFT SGH+ C
Sbjct: 168 RLPPDMPRHMQGDPIRLRQVLMNLLGNALKFTPSGHV----CCS---------------- 207
Query: 584 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 643
+++ +A + R F ++DTG GI K T+FE F Q D S+TR
Sbjct: 208 -------CQVEPKAGDDCVVR--------FRIEDTGIGIPADKLGTIFEDFTQVDSSSTR 252
Query: 644 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS----ESKQIYDADFP 699
+GGTGLGLSI R LV MGG+I V G+ + + LG S QI+ D
Sbjct: 253 VYGGTGLGLSISRKLVQLMGGDIFVQSTPGQGSAFEFHARLGQVSLPDTAHAQIF--DHA 310
Query: 700 NTVVVLA 706
TV+V+A
Sbjct: 311 ATVLVVA 317
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 44/172 (25%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L L ILL +D + +A +L K+G TV DGL + ++R
Sbjct: 440 LRPLEILLVDDVSTNRELAGLLLGKMGHTVHEASDGLDVLTMISRR-------------- 485
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE--------------------HG 1046
+DLI MD QMP MDG+ AT IR E HG
Sbjct: 486 ---------AYDLIFMDLQMPVMDGFTATGIIRACEQGLPAPTDMDDSFLVRAVREKVHG 536
Query: 1047 ARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
PIVA+TAHA+ D+++CLG+GM+ YLTKP+ E + + + R + + S
Sbjct: 537 TYT-PIVAMTAHALLEDKERCLGIGMDGYLTKPLRLEEVHAVLSRFSDTLDS 587
>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 1084
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 68/372 (18%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G IC L+ + +KE++ + L A+ +AE ++ KS FLANMSHE+RTPM IIG+
Sbjct: 535 GIICWLV-DDTQNKELEKQLVL-----AKEEAETASRAKSDFLANMSHEIRTPMNGIIGM 588
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
L +LT+ Q + QI S+ LLR++N ILD SK+E+GK+E+E+ +F L++ LE
Sbjct: 589 TH-LTLQTELTSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLE 647
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E+ + + + +E + +S ++P + GD R+ QI NL+ N+IKFT SGH+++
Sbjct: 648 EVASIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFTQSGHVLVSV 707
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
E + SK T+L+ F V DTG G+
Sbjct: 708 TQERHEGSK-----------------TRLR------------------FSVSDTGIGMTS 732
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ +FESF Q D STTR++GGTGLGL+I + LVN MGGEI V +++PG
Sbjct: 733 EQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHV--RSTPG--------- 781
Query: 685 GASSESKQIYDADFPNTVVVLATVGSMERMII--SQWLRKKKVSTLETSEW--HGLTQIL 740
S I+ A+F TV ER ++ S L +++ ++ +E + L+ +L
Sbjct: 782 ---HGSDFIFTAEF-------GTVAVPERRLLLPSHPLHGERILIVDDNELSRNILSGML 831
Query: 741 REL-LDPISPVS 751
RE LDP+S S
Sbjct: 832 REFQLDPVSAAS 843
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 31/164 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+D+P + S++ ++ G R+LLAED + + VA +IL+ G +V DGL+AVE
Sbjct: 939 QDRPDRAEPSAAPFPELV-GARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVE-- 995
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR- 1048
L +G +D +LMD QMP MDG +AT +R+ AR
Sbjct: 996 ------------KLWEGG---------YDAVLMDIQMPGMDGLKATRILREY-----ARF 1029
Query: 1049 -NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
N+PI+A+TAHAMN D +K L VGM Y+ KPI+ ++ST+ R
Sbjct: 1030 DNLPIIAMTAHAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLAR 1073
>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
Length = 1803
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 154/281 (54%), Gaps = 36/281 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A++KAE + KS FLANMSHE+RTPM AIIG+ L QL +Q V +I+ S+ +
Sbjct: 974 AKQKAEEATQAKSDFLANMSHEIRTPMNAIIGM-SYLAMQTQLNKKQADYVNKIQTSAES 1032
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK++LE TEFDL+ ++ LV + S + ++E ++DL +P
Sbjct: 1033 LLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPT 1092
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ QI NL NN+IKFT G II++ L
Sbjct: 1093 HLIGDPLRLGQILLNLANNAIKFTDRGEIIVKAELIELG--------------------- 1131
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
D+ + F V DTG G+ Q + +F+SF Q D STTRK+GGTGLG
Sbjct: 1132 --------------DDIVEARFSVSDTGIGMTQEQMARLFQSFSQADASTTRKYGGTGLG 1177
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
L+I +TL M G I V ++ G+ G SSE Q
Sbjct: 1178 LTISKTLSEMMNGSIWVESESGQGSTFFFTAQFGISSEYPQ 1218
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 26/144 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL ED + Q +A ++L VG V+ +G +AV+ ++ A+S
Sbjct: 1379 IAGARVLLVEDNAINQEIATELLHMVGVEVTAANNGQEAVD----LVEAQS--------- 1425
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMD QMP MDGY+AT IR + ++PI+A+TA+AM+ D++K
Sbjct: 1426 ----------FDLVLMDIQMPVMDGYQATQAIRNTGR---FDDLPIIAMTANAMSGDKEK 1472
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
CL GMN +L KPI+ ++ ++
Sbjct: 1473 CLAAGMNDHLPKPINPNQVFQALV 1496
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
++G+ +L+ +D+ + + + + + T V G EAL ++ AE ++++
Sbjct: 1227 MQGVSVLIVDDSVAAREILFSLCDSLNFTADVACSG---AEALEKIQTAEQNQQK----- 1278
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
FD+IL D +MPKMDG E +I + P V +TA+ +
Sbjct: 1279 ----------FDVILSDWKMPKMDGIELGRQIEALQERGEIAAAPHFVMVTAYDKDEMLA 1328
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ V + A +TKP+ S ++ T+ R+
Sbjct: 1329 QRQEVDIAASMTKPVSSSTLLDTVSRV 1355
>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1349
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 46/331 (13%)
Query: 418 ASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLN 477
A+N K +FLANMSHE+RTPM IIG+ +L+ D L NEQ + I S+ +LLR++N
Sbjct: 695 AANKAKGEFLANMSHEIRTPMNGIIGMASLLE-DTPLNNEQKDLLQTISSSAESLLRIIN 753
Query: 478 RILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDP 537
ILD SK+E+GK++LE EFD + +E++ + + ++ +S +P V GDP
Sbjct: 754 DILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSKVVGDP 813
Query: 538 GRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQA 597
GR+ Q+ NL N+IKFTS G +I+R + D T
Sbjct: 814 GRLRQVLMNLTGNAIKFTSKGEVIVRALVDEEDRGGAT---------------------- 851
Query: 598 NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
L FE+ DTG G+ QS+ +++ESF Q DPSTTR++GGTGLGL+I +
Sbjct: 852 -------------LRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQ 898
Query: 658 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV------VVLATVGSM 711
L MGG+I K G+L + + E + D P V ++LA +
Sbjct: 899 LCRLMGGKIGAESKEGEGSLFWFTVKM----ERPRNMDVAPPAPVSLQGKRILLADARHI 954
Query: 712 ERMIISQWLRKKKVSTLETSEWHGLTQILRE 742
RM +++ R + + ++LR+
Sbjct: 955 NRMALTEMFRMWRCQVEHAASGKKCLELLRQ 985
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query: 891 KFRKCSFEFSSICPGESSSRREDLIHTMFRE-RHQIGSSRRDQPCSSSNSSSNQKRILEG 949
K R F P S ++ L+ + +E + Q G SR+ + N K
Sbjct: 1039 KLRGIGFAGYLTKPFRHSQLKDMLLAVLAKEDKAQAGESRK--MVTRHTLMENSK----- 1091
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+LL ED + Q VA KI++ +G V V +G + +EA
Sbjct: 1092 LRVLLVEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLEAFK------------------- 1132
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD++ MD QMP MDG AT IRK ESE IPI+A TAHAM D+++ L
Sbjct: 1133 ----NGAFDIVFMDVQMPVMDGLAATAAIRKLESEENRARIPIIAFTAHAMEGDKERFLS 1188
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTK 1094
GM+ YLTKP+ + + + + TK
Sbjct: 1189 AGMDDYLTKPVKKDALTRVMEKATK 1213
>gi|336314449|ref|ZP_08569367.1| PAS domain S-box [Rheinheimera sp. A13L]
gi|335881230|gb|EGM79111.1| PAS domain S-box [Rheinheimera sp. A13L]
Length = 1850
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 177/338 (52%), Gaps = 43/338 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L+A+ KAE + KS FL+NMSHE+RTPM AIIG+ L D +L +Q + + ++ +S+
Sbjct: 1113 LEAKEKAEQATKAKSDFLSNMSHEIRTPMNAIIGMSH-LALDTELAPKQRNYIEKVHRSA 1171
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD SK+E+GK+++E TEF L LE+LVDM ++ + ++E ++ ++
Sbjct: 1172 EVLLGIINDILDFSKIEAGKLDIEQTEFQLDTVLEQLVDMVGLKAAEKHIELHFSIAPDV 1231
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
P + GDP R+ QI +NL NN++KFT +G I + CE
Sbjct: 1232 PTVLSGDPLRLGQILTNLGNNAVKFTEQAGEITVSVHCEQ-------------------- 1271
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
+E N++ L F V D+G G+ + +F+SF Q D STTRK+GGT
Sbjct: 1272 ---------------QEANQVLLHFAVKDSGIGMTAEQQAKLFQSFSQADSSTTRKYGGT 1316
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV----VV 704
GLGL+I +TL M GEI V G+ LG ++ + P+++ VV
Sbjct: 1317 GLGLAICKTLTELMQGEIWVESSEGQGSTFHFTARLGVVTQPQTA--TGLPDSMTGLKVV 1374
Query: 705 LATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRE 742
+A R I++ LR + T ++RE
Sbjct: 1375 VADDNDTARDILAGLLRHQGFDVTSTDSGEQALSVVRE 1412
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 26/150 (17%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
R L G RILLAED L Q +A ++L G V++ +G QA++ L +
Sbjct: 1514 RQLRGARILLAEDNILNQELAMELLSSNGLVVTLAENGQQALDLLQQQ------------ 1561
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
FD +LMDCQMP MDGY AT IR+ +PI+A+TA+ M AD
Sbjct: 1562 -----------HFDAVLMDCQMPVMDGYAATAAIRQLGQ---FSQLPIIAMTANVMAADI 1607
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+K L GMNA++ KPI+ M + + K
Sbjct: 1608 EKALDAGMNAHIAKPINVNEMFLVMAKWIK 1637
>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
Length = 1266
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 167/291 (57%), Gaps = 37/291 (12%)
Query: 388 CILILTNG--VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
I+++ G ++ +L ELI A+ KAE + K +FLANMSHE+RTPM II
Sbjct: 486 AIMLIAEGRDITNMKRLEKELIK---AKEKAEVATGAKDEFLANMSHEIRTPMNGIIAAS 542
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
E+L ++D ++++ + I S+Y+LL ++N ILD+SK+E+GK++LE +F ++ +++
Sbjct: 543 ELLSNED-ISDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDK 601
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
LV+MF + S +E ++D+ IPR +RGD R++QI NL++N++KFT G III G
Sbjct: 602 LVNMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVG- 660
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
+K+ N + E ++ L F + DTG GI
Sbjct: 661 ---------------------------VKELENRSA---ESGEVKLRFFIKDTGIGIAHE 690
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
E +FE F Q D STTR +GGTGLGL I + LV MGGEI+V + G+
Sbjct: 691 NIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGEIRVESEPEKGS 741
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 26/155 (16%)
Query: 941 SNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRR 1000
S K+ L+G R+L+AED Q +A ILE+ G V +V +G +AV+A+ R
Sbjct: 909 SIHKKRLKGFRVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAV----------R 958
Query: 1001 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1060
S +FD +LMD QMP MDGYEAT +IRK +++PI+A+TAHAM
Sbjct: 959 ES-------------QFDALLMDIQMPVMDGYEATRQIRKDAE---FKDLPIIAMTAHAM 1002
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
DE++CL GMN Y+ KP+ + + + + R KN
Sbjct: 1003 KGDEEECLKAGMNGYIPKPVSQDMLFNVLWRELKN 1037
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+GL +L+ +D Q + K+LE G V + SS + SL +
Sbjct: 766 LQGLNVLVVDDCKDSQNIMEKMLESFGFKVESI-----------------SSAQASLQRL 808
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
ET + P DL++MD MP +DG EA+ IR + N+PI+ +TA
Sbjct: 809 REDETRENP-IDLVMMDWLMPGLDGIEASSIIR----DDLKLNVPIIMMTAFGNETQMLY 863
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
VG+N +LTKPI + I+
Sbjct: 864 AEKVGVNGFLTKPICQSTLFDAIM 887
>gi|345889627|ref|ZP_08840624.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
gi|345039416|gb|EGW43747.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
Length = 1084
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 200/372 (53%), Gaps = 68/372 (18%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G IC L+ + +KE++ + L A+ +AE ++ KS FLANMSHE+RTPM IIG+
Sbjct: 535 GIICWLV-DDTQNKELEKQLVL-----AKEEAETASRAKSDFLANMSHEIRTPMNGIIGM 588
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
L +LT+ Q + QI S+ LLR++N ILD SK+E+GK+E+E+ +F L++ LE
Sbjct: 589 SH-LTLQTELTSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLE 647
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E+ + + + +E + +S ++P + GD R+ QI NL+ N+IKFT SGH+++
Sbjct: 648 EVASIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFTQSGHVLVSV 707
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
E + SK T+L+ F V DTG G+
Sbjct: 708 TQERHEGSK-----------------TRLR------------------FSVSDTGIGMTS 732
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ +FESF Q D STTR++GGTGLGL+I + LVN MGGEI V +++PG
Sbjct: 733 EQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHV--RSTPG--------- 781
Query: 685 GASSESKQIYDADFPNTVVVLATVGSMERMII--SQWLRKKKVSTLETSEW--HGLTQIL 740
S ++ A+F TV ER ++ S L +++ ++ +E + L+ +L
Sbjct: 782 ---HGSDFVFTAEF-------GTVAVPERRLLLPSHPLHGERILIVDDNELSRNILSGML 831
Query: 741 REL-LDPISPVS 751
RE LDP+S S
Sbjct: 832 REFQLDPVSAAS 843
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 31/164 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+D+P + S++ ++ G R+LLAED + + VA +IL+ G +V DGL+AVE
Sbjct: 939 QDRPDRAEPSTAPFPELM-GARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVE-- 995
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR- 1048
L +G +D +LMD QMP MDG +AT +R+ AR
Sbjct: 996 ------------KLWEGG---------YDAVLMDIQMPGMDGLKATRILREY-----ARF 1029
Query: 1049 -NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
N+PI+A+TAHAMN D +K L VGM Y+ KPI+ ++ST+ R
Sbjct: 1030 DNLPIIAMTAHAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLAR 1073
>gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
piezotolerans WP3]
Length = 1771
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 157/265 (59%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A++ KS FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I ++S +
Sbjct: 1037 AKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQQNYVQKIDRASKS 1095
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++E+ F L+ LE+L DMFSV+ ++ +E + ++ NIPR
Sbjct: 1096 LLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFAVAPNIPR 1155
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ NL+NN++KFT G +++ S + E
Sbjct: 1156 QLEGDPLRLSQVLINLMNNAVKFTDQGEVLL---------SISQLE-------------- 1192
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R D+ + L F V D G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1193 ------------RVDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLG 1240
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV MGGEI V + G+
Sbjct: 1241 LAICKQLVELMGGEIGVESQFGNGS 1265
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 28/151 (18%)
Query: 933 PCSSSNSSSNQKRI--LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
P + NQK + L+G RILL ED + Q VA + LE+VG T+S+ +G A+E L
Sbjct: 1413 PVRRTGVEVNQKLLTQLKGKRILLVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKLA 1472
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
T FDL+LMDCQMP MDGY+AT +RK ++
Sbjct: 1473 -----------------------TQTFDLVLMDCQMPVMDGYQATQALRKIPE---LSDL 1506
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
P++A+TA+AM D++ CL VGMN ++ KPI+
Sbjct: 1507 PVIAMTANAMAGDKEMCLRVGMNDHIAKPIE 1537
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+RIL+A+D + + LE +G V V G QAVE
Sbjct: 1287 LEGMRILVADDNATARDILRTTLESMGFEVDTVKSGAQAVERCK---------------- 1330
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
T ++ + L+D MP+M+G E + I + SE + I+ ++AHA
Sbjct: 1331 -------TTQYPVALIDWLMPEMNGLETSAAI-IANSETPPK---ILIVSAHANTELTDH 1379
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL-RLTKN--MPSEATG 1102
G G+ Y+TKPI + R++ I+ L KN +P TG
Sbjct: 1380 IEGSGIAGYITKPISASRLLDGIMSSLGKNGAIPVRRTG 1418
>gi|410635517|ref|ZP_11346128.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
gi|410144918|dbj|GAC13333.1| hypothetical protein GLIP_0687 [Glaciecola lipolytica E3]
Length = 1184
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 183/356 (51%), Gaps = 53/356 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK----SDDQLTNEQYSTVCQIK 466
+A +A+ ++ KS FLANMSHE+RTP+ IIG+ ++L S+ QL +Y+ + Q
Sbjct: 656 EAEEQAKVASQAKSDFLANMSHEIRTPINGIIGMNDLLLNTPLSEQQL---KYAELAQ-- 710
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
S LL L+N ILD SK+E+GK+++EN EFDL + L V+ FS++ +E + +
Sbjct: 711 NSGQILLALINDILDFSKIEAGKLDIENIEFDLHEMLHCFVESFSLRAEEKQLELIFSMQ 770
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
+P+ ++GDPGR+ QI SNL +N+IKFT G I+I+
Sbjct: 771 AKVPKWIKGDPGRIRQILSNLTSNAIKFTQQGEIVIK----------------------- 807
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+N DNKL C V D+G GI ++K + +F+ F Q D STTRK G
Sbjct: 808 --------------VNLLADNKLIFC--VVDSGIGISENKQKQLFQKFSQLDASTTRKFG 851
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF-----PNT 701
GTGLGLSI + LV M GEI V + G+ + +SE K + D+ N
Sbjct: 852 GTGLGLSIAKELVELMHGEIGVNSEWKKGSEFWFTIQFDPASERKNSGNLDYSYENIANL 911
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDA 757
V++ R ++ L +K++ ++ ++LR+ + P+ DA
Sbjct: 912 RVLIVDDNKTNREVLCSILESQKINVVQAQNSPAALKLLRQNSENKKPIDIAIIDA 967
Score = 107 bits (266), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 890 QKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEG 949
QKF+ F+ P + +DL+ + +QI ++R + ++ ++ L+
Sbjct: 1005 QKFQSIGFDAYFSKP----IKNDDLLSAISVIANQI-NTRTETAFEMITKRNSIRKPLQM 1059
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
R+LL ED + Q VA ++L+ + + +GL+A+E LN+ +
Sbjct: 1060 PRVLLVEDNIINQAVADEMLKNLNCQTELANNGLEALERLNQ-----------------T 1102
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
P FD++LMDCQMP MDGYEA+ +IR ++ NIPIVALTA+AM D++KC
Sbjct: 1103 AIP----FDIVLMDCQMPVMDGYEASRKIRAAQDVRFDPNIPIVALTANAMKGDQEKCFA 1158
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ YLTKPI E +
Sbjct: 1159 AGMDGYLTKPIVLEEL 1174
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 933 PCSSSNSSSNQKRILEG---LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
P S +S N E LR+L+ +D + V C ILE V V+A
Sbjct: 891 PASERKNSGNLDYSYENIANLRVLIVDDNKTNREVLCSILESQKINV---------VQAQ 941
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
N A + L Q S ++ P D+ ++D MP ++G E I+ S+
Sbjct: 942 NSPAAL-----KLLRQNSENKKP----IDIAIIDADMPGINGTELGKAIK---SDQRFTK 989
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I ++ +T+ A D +K +G +AY +KPI ++ ++S I
Sbjct: 990 IKMILMTSTAQRGDAQKFQSIGFDAYFSKPIKNDDLLSAI 1029
>gi|297819670|ref|XP_002877718.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297323556|gb|EFH53977.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1063
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 160/545 (29%), Positives = 274/545 (50%), Gaps = 56/545 (10%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASW-HVAVSKFTNSPLLSAALP 223
WY + +D +TG G A+ P DL + W VA S + L +L
Sbjct: 125 WYTQTVDQLTGRLNGNATKSQPLDLTH-----------TDWFQVAQSDNYTTAFLGTSLG 173
Query: 224 VWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEV------HSGHIYLTSQEGYLLAT--S 275
D T +S+V++ L S+G +K L +V H +Y+ +++ +L S
Sbjct: 174 GEDNETLIQSVVSLYN-NKGLVSLGFPVKTLTDVLNSLNLHGEELYMWTKDETMLVRQGS 232
Query: 276 TNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYY 335
NA ++ + + + +S + +G+Q + S G+ + ++ +K Q +
Sbjct: 233 LNASFFVSNGS---ICFSRESKS----IGSQCIPYNCSSS---GYEVEIKRSKF---QAF 279
Query: 336 MDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCI-LVIGCICILILTN 394
L + + + ++ P + + ++A K + LI ++ L + +
Sbjct: 280 CSV--LEVSGVSLRYTLMFPNKSGATRIRDQAEKAMYQLIVVTIFFGLGWPLWFVWFMMQ 337
Query: 395 GVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
+EM +RA LI+ ++A ++AE + KSQ AN SH++R +A I GL++I + + +
Sbjct: 338 ATRREMHMRAVLINQMEATQQAERKSMNKSQAFANASHDIRGALAGIKGLIDICRDEVKP 397
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
++ +T+ Q+ S L+ LLN +LD+SK+ESGKM L +F+L K LE+++D +
Sbjct: 398 GSDVDTTLRQVNVCSKDLVVLLNSVLDMSKIESGKMHLVEEDFNLAKLLEDIIDFYHPVA 457
Query: 515 SNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
V+ VLDL + NVRGD G++ QI +NLI+N++KFT GHI IR W + +
Sbjct: 458 MKKGVDVVLDLHNGSIFKFSNVRGDSGKLKQILNNLISNAVKFTVDGHISIRAWAQR-PS 516
Query: 572 SKNTAEFPTDRKKFGRAFRT---KLKQQANN-----AMNFRED-NKLALCFEVDDTGCGI 622
SK++ +D + + ++ K K Q++ + + R + N + FEVDDTG GI
Sbjct: 517 SKSSVVLASDPQGVSKILKSMFCKNKDQSSTCETEISNSIRNNANTMEFVFEVDDTGRGI 576
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR-TLVNKMGGEIKVVKK--NSPGTLMQ 679
++VFE+ Q + +H GTGLGL IV+ +LV MGGEI++ K GT Q
Sbjct: 577 PMEMRKSVFENNVQVRET---RHQGTGLGLGIVQSSLVRLMGGEIRITDKAMGEKGTCFQ 633
Query: 680 LYLLL 684
+LL
Sbjct: 634 FNVLL 638
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 22/144 (15%)
Query: 939 SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESS 998
S + L G R+L+ +D LI+ VA L+K+G VS V EAL + +
Sbjct: 924 SKPSDDEFLRGKRVLVVDDNFLIRKVATGKLKKMG--VSEVKQCDSGKEALRLVTEGLAQ 981
Query: 999 RRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
RR QGS P FD I MDCQ IRK E +G R IP++A++ H
Sbjct: 982 RREE--QGSIYNLP----FDYIFMDCQ------------IRKVEKSYGVR-IPVIAVSGH 1022
Query: 1059 AMNADE-KKCLGVGMNAYLTKPID 1081
+ E ++ + GM+A+L K ++
Sbjct: 1023 DHGSREARETIQAGMDAFLDKNLN 1046
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 18/347 (5%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ S+ LVI + I VS+ K+ + ++ +++AEA++ KSQFLA +SHE+
Sbjct: 374 ITTSIGTLVIALLVGYIFHATVSRIAKVEDDYRQMMELKKRAEAADVAKSQFLATVSHEI 433
Query: 435 RTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM ++G+L++L D +T E Y Q S AL+ L+N +LD +K+ESGK+ELE
Sbjct: 434 RTPMNGVLGMLQMLMDTDLDITQEDYVRTAQ--ASGKALVSLINEVLDQAKIESGKLELE 491
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FDL+ L++++ +F + +E + +SD +P + GD GR+ QI +NL+ NSIK
Sbjct: 492 AVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVPDVLVGDHGRIRQIITNLMGNSIK 551
Query: 554 FTSSGHI-----IIRGWCENLD------TSKNTAEFPT-DRKKFGRAFRT-KLKQQANN- 599
FT GHI I +LD ++ FP +R++ +F+ KL+ A++
Sbjct: 552 FTERGHIYLTVHIFEEVLNSLDKEIEVHSTDTLCGFPVANRRRSWESFKNFKLELPASDP 611
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++ N + L V+DTG GI VF F Q PS +R HGGTG+GLSI + LV
Sbjct: 612 SLLSTSSNHINLIISVEDTGVGIPLEAQSRVFTPFMQVGPSISRIHGGTGIGLSISKCLV 671
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLG-ASSESKQIYDADFPNTVVVL 705
M GEI V + G+ ++L A + S + ++F + ++
Sbjct: 672 GLMKGEIGFVSQPQIGSTFTFTVVLTRACTNSNEYKSSEFHGMIALV 718
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 46/174 (26%)
Query: 927 SSRRDQPCSSSNSSSNQKR-------ILEGLRILLAEDTPLIQIVACKILEKVGATVSVV 979
S RR C S N + +L +IL+ +D + VA L+K GA V+
Sbjct: 831 SLRRAMGCGDGEHSRNGRLPQLSLRGLLHEKQILVVDDNIVNLRVAYGALKKYGAEVTCA 890
Query: 980 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR 1039
G +A+ L P +FD MD QMP+MDG+EAT IR
Sbjct: 891 ESGKKAIGMLK-----------------PPH-----KFDACFMDIQMPEMDGFEATKRIR 928
Query: 1040 KSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+ E++ + ++PI+A+TA + A ++CL + ++ ++
Sbjct: 929 EMEADINKQIECREVPVETSENVLHWHVPILAMTADVIQATHEECLRMLVHVFI 982
>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
Length = 1030
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 186/348 (53%), Gaps = 49/348 (14%)
Query: 395 GVSKEMKLRAELIS-HLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+ + +K+ E I ++ RKAE + KS FLANMSHE+RTP+ I+G LE+L + D
Sbjct: 366 GMDEALKIVDEAIKVTQESVRKAEEATKAKSLFLANMSHEIRTPLNGILGFLELLNTTD- 424
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT EQ V I +S+ LL+++N ILD+SK+ES K+ LE +F E E +++F
Sbjct: 425 LTEEQLDYVNTIAQSAKNLLQIVNNILDVSKIESNKVSLELIDFKAVDEFENTIELFGTP 484
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTS 572
+ N+E +S NIP ++GD ++ +I +NL++N+IKFT ++GHI ++ E +
Sbjct: 485 AAQKNIELTTQISPNIPSIIKGDILKIKEILTNLLSNAIKFTPNNGHIHVKIQLEKII-- 542
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
DNK + FEV D+G G+ + + E +FE
Sbjct: 543 ---------------------------------DNKAKIYFEVRDSGIGMSEEQKEKIFE 569
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
+F Q D S TRK+GGTGLGL+IV++ + MGG+I + + + GT L+ +
Sbjct: 570 AFSQADESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGTKFYFNLMFDIVDPKPK 629
Query: 693 IYDADFPNT-VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQI 739
F N + VL T I++ LRK+ +TLE + G ++
Sbjct: 630 YAKDIFANKEIAVLNT--------ITETLRKE--TTLEYLNYFGTEKV 667
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 21/150 (14%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q + + L+ L+AED P+ Q + L+ +G + +GL EA N+
Sbjct: 762 QHKDIYSLKALIAEDNPINQKLLQTTLKSLGIESDLANNGL---EAFNKYTI-------- 810
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
PD ++D+I MD QMP MDG EAT EI + E E + PI+A+TA+ +
Sbjct: 811 --------NPD--KYDVIFMDVQMPVMDGLEATQEILEFEQEEEIPHTPIIAVTANVLKG 860
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
D ++ LG GM+ Y++KPI+ + ++ + R+
Sbjct: 861 DRERFLGSGMDEYISKPIEKDALLKILERV 890
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 13/309 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I +++ K+ + ++ +++AEA++ KSQFLA +SH
Sbjct: 394 LAITTSIGILVIALLIGYIFHATMNRIAKVEDDYNEMMELKKRAEAADVAKSQFLATVSH 453
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L +L D +L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 454 EIRTPMNGVLGMLHMLM-DTELDATQQDYVRTAQDSGKALVSLINEVLDQAKIESGKIEL 512
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E +FDL+ ++E++ +FS + VE + +SD +P + GDPGR QI +NL+ NSI
Sbjct: 513 EAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVPEILIGDPGRFRQIITNLMGNSI 572
Query: 553 KFTSSGHI-----IIRGWCENLD-----TSKNT-AEFPT-DRKKFGRAFRTKLKQQANNA 600
KFT GHI ++ +++D +S+NT + P DR + F+T + +++
Sbjct: 573 KFTKKGHIFLTVHLVEEVMDSIDVETESSSRNTLSGLPVADRCRSWVGFKTFNPEGSSHT 632
Query: 601 MNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
++ + + L V+DTG GI VF F Q DPS +RK+GGTG+GLSI + LV
Sbjct: 633 LSPSSSDLINLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVG 692
Query: 661 KMGGEIKVV 669
M G+I V
Sbjct: 693 LMNGDIGFV 701
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 25/163 (15%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+ PC+ + S + +++L G ++L+ +D + +VA L+K GA V G +A++ L
Sbjct: 873 KGNPCNGEHPSLSLRKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLL 932
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
P +FD MD QMP+MDG+EAT IR ES +
Sbjct: 933 K-----------------PPH-----KFDACFMDIQMPEMDGFEATRRIRDMESNW---H 967
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
IPI+A+TA + A ++C GM+ Y++KP ++E++ + R
Sbjct: 968 IPILAMTADVIQATYEECQRCGMDGYVSKPFEAEQLYHEVSRF 1010
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 13/309 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I +++ K+ + ++ +++AEA++ KSQFLA +SH
Sbjct: 404 LAITTSIGILVIALLIGYIFHATMNRIAKVEDDYNEMMELKKRAEAADVAKSQFLATVSH 463
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L +L D +L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 464 EIRTPMNGVLGMLHMLM-DTELDATQQDYVRTAQDSGKALVSLINEVLDQAKIESGKIEL 522
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E +FDL+ ++E++ +FS + VE + +SD +P + GDPGR QI +NL+ NSI
Sbjct: 523 EAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVPEILIGDPGRFRQIITNLMGNSI 582
Query: 553 KFTSSGHI-----IIRGWCENLD-----TSKNT-AEFPT-DRKKFGRAFRTKLKQQANNA 600
KFT GHI ++ +++D +S+NT + P DR + F+T + +++
Sbjct: 583 KFTKKGHIFLTVHLVEEVMDSIDVETESSSRNTLSGLPVADRCRSWVGFKTFNPEGSSHT 642
Query: 601 MNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
++ + + L V+DTG GI VF F Q DPS +RK+GGTG+GLSI + LV
Sbjct: 643 LSPSSSDLINLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVG 702
Query: 661 KMGGEIKVV 669
M G+I V
Sbjct: 703 LMNGDIGFV 711
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 25/163 (15%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+ PC+ + S + +++L G ++L+ +D + +VA L+K GA V G +A++ L
Sbjct: 883 KGNPCNGEHPSLSLRKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLL 942
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
P +FD MD QMP+MDG+EAT IR ES +
Sbjct: 943 K-----------------PPH-----KFDACFMDIQMPEMDGFEATRRIRDMESNW---H 977
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
IPI+A+TA + A ++C GM+ Y++KP ++E++ + R
Sbjct: 978 IPILAMTADVIQATYEECQRCGMDGYVSKPFEAEQLYHEVSRF 1020
>gi|390949064|ref|YP_006412823.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
gi|390425633|gb|AFL72698.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
Length = 907
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 175/327 (53%), Gaps = 37/327 (11%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE ++ KS F+A MSHE+RTPM IIG+ E L D +LT+EQ + ++ S+ LL
Sbjct: 373 RAEDASRAKSDFMATMSHEIRTPMNGIIGMTE-LTLDTELTDEQRDCLNIVRMSADGLLT 431
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+GK+ +E+ +FDL + + E++ +V+ ++E + ++ +PR V
Sbjct: 432 IINDILDFSKIEAGKLNVESIDFDLHRLINEVMKTLAVKADEKHLELLCEIDSKVPRAVF 491
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI +NL+NN+IKFT +G + A R L+
Sbjct: 492 GDPGRLRQILTNLLNNAIKFTETGEV---------------------------ALRVVLQ 524
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ + +N L F + DTG GI +FE+F Q D STTR+ GGTGLGL+I
Sbjct: 525 ETVVDRLN--------LHFALRDTGIGIPPEHQARIFEAFSQQDTSTTRRFGGTGLGLTI 576
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS-ESKQIYDADFPNTVVVLATVGSMER 713
R L MGG I V + G+ + L LG S+ E+ D + V+L + R
Sbjct: 577 SRRLAELMGGRIWVDSRPGEGSTFHVVLWLGLSTREALSPPPQDLRDKRVLLVDDNATNR 636
Query: 714 MIISQWLRKKKVSTLETSEWHGLTQIL 740
++ + + + ++ E ++ Q+L
Sbjct: 637 RVLGKLVVQWEMRLTEAADGREALQVL 663
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 24/138 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L+ILLAED + Q + +L K G ++ +G +AV+ R +P
Sbjct: 770 ALKILLAEDNAVNQKLMLMVLSKWGHEATLAQNGQEAVDWSAR---------------AP 814
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA-RNIPIVALTAHAMNADEKKC 1067
FDLILMD QMP M G EAT IR E+ IPI ALTA A+ +
Sbjct: 815 --------FDLILMDMQMPVMGGLEATRRIRDREATAPTPSRIPIYALTAAALPEERAAG 866
Query: 1068 LGVGMNAYLTKPIDSERM 1085
L G++ YLTKP++ + +
Sbjct: 867 LAAGLDGYLTKPLNKKEL 884
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL +D + V K++ + ++ DG +A++ L + +
Sbjct: 625 RVLLVDDNATNRRVLGKLVVQWEMRLTEAADGREALQVLE----------------ANAS 668
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
TP FD++L+D MP+MDG+E +++ R++ ++ L++ ++ +C +
Sbjct: 669 TP----FDVLLIDYHMPRMDGFELAAALKQDAR---FRDLKLIMLSSASVRGLGMRCREL 721
Query: 1071 GMNAYLTKPIDSERMVSTILRL---TKNMPSEATGTTR 1105
G++A+LTKP+ ++ I L T P A TR
Sbjct: 722 GIDAFLTKPVARHELLKAIHALLGRTDRQPDPAPLITR 759
>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1768
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 162/277 (58%), Gaps = 38/277 (13%)
Query: 400 MKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
+KL +E ++ A+ A+A++ KS FLANMSHE+RTPM AIIG+ ++ L +Q
Sbjct: 1019 LKLLSEELTQ--AKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQT-SLDKKQQ 1075
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
+ V +I ++S +LL ++N ILD SK+E+GK+++E F L LE+L DMFSV+ ++ +
Sbjct: 1076 NYVEKIDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQL 1135
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
E + ++ NIPR++ GDP R+ Q+ NL+NN+IKFT G +++
Sbjct: 1136 ELLFAVAPNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVML----------------- 1178
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
+ + RED ++ L F V D G G+ + + +F+SF Q D
Sbjct: 1179 ------------------SISQLVREDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADS 1220
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
STTRK+GGTGLGL+I + LV MGGEI V + G+
Sbjct: 1221 STTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGS 1257
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 26/144 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + Q VA + LE+VG +S+ +G A+E L A +S
Sbjct: 1421 LKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKL----AMQS--------- 1467
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT E+RK ++P++A+TA+AM D++
Sbjct: 1468 ----------FDLVLMDCQMPVMDGYQATAELRKRPE---LADLPVIAMTANAMAGDKEM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
CL GMN ++ KPI+ + T+L
Sbjct: 1515 CLRAGMNDHIAKPIEVSLLYKTLL 1538
Score = 48.5 bits (114), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+RIL+A+D + + LE +G TV V G EAL+R
Sbjct: 1279 LEGMRILVADDNATARDILRSTLESMGFTVDTVRSG---AEALSRC-------------- 1321
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
ET + + L+D +MP+MDG E R+ SE N P + ++AHA
Sbjct: 1322 --QETD----YGVALIDWRMPEMDGLETA---RRLLSER--TNPPKTLIVSAHADGDFID 1370
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTIL 1090
K ++ Y+TKPI + R++ I+
Sbjct: 1371 KAEQAEISGYITKPISASRLLDGIM 1395
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 25/371 (6%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ S+ ILVI + I V++ K+ + + +++AEA++ KSQFLA +SHE+
Sbjct: 411 ITTSIGILVIALLVGHIFYATVNRIAKVEDDCREMRELKKRAEAADVAKSQFLATVSHEI 470
Query: 435 RTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM ++G+L +L D +T +++ Q+ S AL+ L+N +LD +K+E+GK+ELE
Sbjct: 471 RTPMNGVLGMLHMLMDTDLDVTQQEFVRTAQV--SGKALMSLINEVLDQAKIEAGKLELE 528
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FDL+ L++++ +FS + VE + +SD +P + GDPGR QI +NL+ NSIK
Sbjct: 529 AVLFDLRAILDDVLSLFSEKSQEKGVELGVYVSDQVPELLIGDPGRFRQITTNLMGNSIK 588
Query: 554 FTSSGHIIIR-------GWCENLD---TSKNT-AEFPT-DRKKFGRAFRTKLKQQANNAM 601
FT GH+ + + +D TS+NT + FP D ++ F+ ++ +
Sbjct: 589 FTDKGHVFVTVHLVEEVVYSTKVDKESTSENTLSGFPVADSRRSWEGFKAFSQEGPLGSF 648
Query: 602 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661
+ + + L V+DTG GI +F F Q PS +RKHGGTG+GLSI + LV+
Sbjct: 649 SSSSGDLINLIVSVEDTGEGIPLEAQPHIFTPFMQVGPSISRKHGGTGIGLSISKCLVHL 708
Query: 662 MGGEIKVVKKNSPGTLMQLYLL----LGASSESK--QIYDADFPNTVVVLATVGSMERMI 715
M GEI V G+ + L +S+E K QI + P + + M MI
Sbjct: 709 MSGEIGFVSIPKIGSTFTFTAIFTNGLPSSNECKTQQIINQPHPAS----SEFKGMTAMI 764
Query: 716 ISQWLRKKKVS 726
I + KVS
Sbjct: 765 IDHRPVRAKVS 775
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 34/164 (20%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G RIL+ +D + ++VA L+K GA V V G +A+ +L
Sbjct: 901 RHLLRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAISSLK------------- 947
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE----SEHGARNI--------P 1051
P +FD MD QMP++DG+EAT IR E SE +I P
Sbjct: 948 ----PPH-----QFDACFMDIQMPEIDGFEATRTIRDMELSVNSEMSVYDIDNVSNWHVP 998
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
I+ +TA + A ++ CL GM+ Y++KP ++E++ + R ++
Sbjct: 999 ILTMTADVIQATQEACLRCGMDGYVSKPFEAEQLYIEVSRFFQS 1042
>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 1149
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 160/289 (55%), Gaps = 36/289 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+A+ KAE++ KS+FLA MSHE+RTPM ++G+ E+L + +L +EQ + I +S
Sbjct: 482 FEAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMAELL-AGTKLDDEQQEFLEVITQSG 540
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+LL ++N ILD SK E+GK+ELE FDL++ + + V + S S+ +E ++ +
Sbjct: 541 NSLLGIINDILDFSKAEAGKIELEAISFDLERTIYDAVRLLSANASSKGLELIISYPPEL 600
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR V GD GR+ QI +NL N+IKFT GHI I N++T+K T
Sbjct: 601 PRQVMGDAGRIRQIITNLAGNAIKFTQQGHIAI-----NVETTKAT-------------- 641
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ FR V DTG GI +++ + +F+SF Q D STTRK+GGTG
Sbjct: 642 --------DGTSRFR--------ISVIDTGIGIPEAQQQRLFKSFTQADSSTTRKYGGTG 685
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
LGL+I + LV MGG I V G+ L + LG S + + AD
Sbjct: 686 LGLAISKQLVELMGGSIGVSSTQGEGSTFWLEIPLGLSQPREPLGHADL 734
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 25/151 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED Q VA +L K+G TV + +G A+E L AE S
Sbjct: 893 KILLVEDLLPNQKVASSVLSKMGCTVEIADNGRIALERL-----AEDS------------ 935
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD++LMDCQMP+MDG EAT IR+ E + G + PI+A+TA+ M +D K+CL
Sbjct: 936 ------FDIVLMDCQMPEMDGLEATRAIRQRERDTGT-HTPIIAMTANNMASDRKQCLEA 988
Query: 1071 GMNAYLTKPIDSERMVSTILR-LTKNMPSEA 1100
GM+ +++KP + E++ + + L PS A
Sbjct: 989 GMDDFISKPFEREQLAKLLGKWLNPKSPSAA 1019
Score = 43.5 bits (101), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L L+ L+ +D L Q + L G + V G +A+ M +A
Sbjct: 734 LSRLKCLILDDNLLNQRIFRDQLRSCGMQIHTVTTGDEALTLATEMASANKP-------- 785
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD+ L+D +P ++G + + +R+ + + P++ LT+ D K
Sbjct: 786 ----------FDIFLLDFNLPGINGEQIALRLRQMPA---YKETPMILLTSSGNRGDAKH 832
Query: 1067 CLGVGMNAYLTKPI 1080
VG +AYL KP+
Sbjct: 833 FEEVGFDAYLIKPV 846
>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
Length = 1049
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 153/276 (55%), Gaps = 26/276 (9%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AEA+N+ KS+FLANMSHE+RTPM IG+ +L D +LT EQ +K S +LL
Sbjct: 513 QAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLL-DTELTEEQRQYAGIVKSSGESLLV 571
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N ILD SK+E+GK+E+E +FDLQ L++ + + + +E + ++P +
Sbjct: 572 LINDILDFSKIEAGKLEIETLDFDLQSLLDDFAATTAFKTHDKGLELLCAAEPDVPVQLS 631
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI +NL+ N++KFT G + IR K G A +T
Sbjct: 632 GDPGRLRQILTNLVGNALKFTEKGEVAIR------------------VKTVGEACQT--- 670
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
++N +D L L F V DTG GI K +F+ F Q D STTRK+GGTGLGL+I
Sbjct: 671 --GQTSLN--DDASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKYGGTGLGLAI 726
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
+ L MGGEI V G+ LG S++
Sbjct: 727 SKHLAEMMGGEIGVESVEGQGSEFWFTARLGLRSQA 762
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 81/153 (52%), Gaps = 23/153 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILLAED Q VA IL+K+G + V +G +A+EAL
Sbjct: 789 RILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALK-------------------- 828
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
T +DL+LMD QMP+MDG EAT +IR +S RNIPI+A+TAHAM D +K L
Sbjct: 829 ---TLPYDLVLMDVQMPEMDGLEATRQIRNPKSPIPNRNIPIIAMTAHAMQGDREKFLAA 885
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GMN Y+ KP+ + + + + + G+
Sbjct: 886 GMNDYVAKPVSPQDLAEALEKWLPELEERGQGS 918
>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 1295
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 160/282 (56%), Gaps = 36/282 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+N KS FLANMSHE+RTP+ +IG+ ++L L++ Q + + +K+SS A
Sbjct: 783 AKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLLLGS-TLSHRQRAHLQIVKQSSDA 841
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +LN ILD SK+E+GK+ E F+L++ + E++ +++ S+ +E + D++ ++P
Sbjct: 842 LLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALALRASDKGIELIGDIAADVPT 901
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+V GDPGR+ Q+ NL+ N+IKFTS G +I+R C
Sbjct: 902 HVLGDPGRLRQVLVNLVGNAIKFTSQGEVIVRLEC------------------------- 936
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
A NA +++ L F + D+G GI + K T+F++F Q D S TR++GGTGLG
Sbjct: 937 ----SAGNA------DEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLG 986
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
L+I L +GG I+V G+ L G +++ +
Sbjct: 987 LTISARLAELLGGHIRVDSTLGQGSTFHFTLRCGIDGQARPL 1028
>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 1149
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 158/282 (56%), Gaps = 43/282 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LRA + R+AE +N KS FLANMSHE+RTPM IIG+ +L S+ L NEQ
Sbjct: 613 EERLRATM-------REAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLL-SETTLENEQ 664
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I+ SS ALL ++N ILD SK+ESGK+E+EN FDL+ +EE +D ++Q +
Sbjct: 665 HDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKG 724
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
++ +P ++ GDP R+ Q+ NLI N++KFT+ G +++R +D
Sbjct: 725 LDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVR-----VD-------- 771
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
F K D+ + L F+V DTG GI + + +F SF Q D
Sbjct: 772 ---------PFHIK-------------DDDVILHFKVTDTGIGIPADRIDRLFGSFSQVD 809
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
STTRK+GGTGLGL+I + LV MGG + V ++ G+
Sbjct: 810 ASTTRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHF 851
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 26/150 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA ++ +K+G +SV +GL+AV +
Sbjct: 1015 LRILLAEDNVINQKVAKRLFKKMGYEISVAQNGLEAVAMIGE------------------ 1056
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
F+L+ MD QMP+MDG EAT EI K R I+ALTA+AM D + C
Sbjct: 1057 -----NEFELVFMDIQMPEMDGLEATREIIKRWPSERPR---IIALTANAMREDRENCFA 1108
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
GM+ YLTKP + + I + + E
Sbjct: 1109 AGMDGYLTKPFKLDDLKDVIAKTYNRLSEE 1138
>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
Length = 1761
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 158/265 (59%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I ++S +
Sbjct: 1026 AKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQT-ELNRKQQNYVLKIDRASKS 1084
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++E+ F L LE+L DMFSV+ ++ +E + ++ NIPR
Sbjct: 1085 LLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKATDKRLELLFAVAPNIPR 1144
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GDP R+ Q+ NL++N+IKFT G +++ S + E
Sbjct: 1145 QLQGDPLRLSQVLINLMSNAIKFTEQGEVLL---------SISQLE-------------- 1181
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R ++ + L F V D G G+ + + E +F+SF Q D STTRK+GGTGLG
Sbjct: 1182 ------------RIEDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLG 1229
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV MGGEI V + G+
Sbjct: 1230 LAISKQLVELMGGEIGVESQFGNGS 1254
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G R+LL ED + Q VA + LE+VG +S+ +G A+E L
Sbjct: 1418 LQGKRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKLA---------------- 1461
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
T FDL+LMDCQMP MDGY+AT E+RK G +P++A+TA+AM D++
Sbjct: 1462 -------TQSFDLVLMDCQMPVMDGYQATRELRKMP---GLEKLPVIAMTANAMAGDKEM 1511
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL VGMN ++ KPI+ R+ ST+L+
Sbjct: 1512 CLRVGMNDHIAKPIEVARLYSTLLQ 1536
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 27/147 (18%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
KR +EG+RIL+A+D + + LE +G V V G +A+E
Sbjct: 1273 KREIEGMRILVADDNATARDIMRTTLESMGFKVDAVKSGAEAIE---------------- 1316
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+ D P + L+D MP+M+G EA +I S EH + I+ ++AHA
Sbjct: 1317 ----HCQHTDYP---VALIDWLMPEMNGIEAAQKIL-SGKEHPPK---ILIVSAHANAEF 1365
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++ + +Y+TKPI + R++ I+
Sbjct: 1366 IEQVEHSDIASYITKPISASRLLDGIM 1392
>gi|434394295|ref|YP_007129242.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428266136|gb|AFZ32082.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1873
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 154/271 (56%), Gaps = 41/271 (15%)
Query: 399 EMKLRAEL-ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
E + R EL I+H R+AE ++ KS FLANMSHE+RTPM A++G+ +L D LT E
Sbjct: 1135 ETRQRQELEIAH----RQAELASQAKSSFLANMSHEIRTPMNAVLGMTGLLL-DTPLTPE 1189
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + I+ S ALL L+N ILDLSK+E+G+MELE FDL ++E++++ + Q
Sbjct: 1190 QRDFLQTIRTSGDALLSLINEILDLSKLEAGEMELETLNFDLSTCIDEVLELLAPQAHTK 1249
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
NVE + N+P ++GD GR+ Q+ +NLINN+IKFTS+G +++ +AE
Sbjct: 1250 NVEIAGLIYRNVPTCLQGDAGRLRQVLTNLINNAIKFTSNGEVVV------------SAE 1297
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
++ R + F V DTG GI +F F Q
Sbjct: 1298 LQSETSTTAR-----------------------IRFTVADTGIGISLEDQHNLFSPFTQV 1334
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
D STTRK+GGTGLGL+I R LV MGGEI V
Sbjct: 1335 DASTTRKYGGTGLGLAICRQLVTLMGGEIGV 1365
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
S S N+K L+ILLAED + Q VA K L+ +G T V +G + +E + ++
Sbjct: 1612 STESRNRK---SKLKILLAEDNLINQKVALKQLQALGYTADVAANGQEVLELIEKI---- 1664
Query: 997 SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA--RNIPIVA 1054
+DLILMDCQMP +DG ATIEIR+ E A R IVA
Sbjct: 1665 -------------------PYDLILMDCQMPILDGIAATIEIRRWEKSRFANERQPIIVA 1705
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
+TA+AM D++ CL GMN YL+KP+ E++ + + R + ++ AT
Sbjct: 1706 MTANAMQEDQQMCLDAGMNDYLSKPVIKEKLAAVVERWSCHLEQAAT 1752
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G+ EA N ++A ++ LL S TP +D L+D QMP+++G ++I+ +
Sbjct: 1423 GMHVDEAENAVVAIDT-----LLHASQQNTP----YDFALIDMQMPEINGLMLGVQIKAN 1473
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
++P++ LT+ + ++ +G AYL KP+ R+++TI
Sbjct: 1474 PK---LADLPLIMLTSTNQRDEVQRAKKIGFAAYLLKPVKPSRLLNTI 1518
>gi|24372448|ref|NP_716490.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
gi|24346431|gb|AAN53935.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
Length = 1765
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 177/318 (55%), Gaps = 38/318 (11%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL ++ + L A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ QL +Q
Sbjct: 1018 ELKLLSDEL--LVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-QLDKKQ 1074
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ + +I+++S +LL ++N ILD SK+E+GK+++EN F L LE+L DMFS + +
Sbjct: 1075 KNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQ 1134
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++ N+PR++ GDP R+ Q+ NL+NN+IKFT G +++
Sbjct: 1135 IELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLL---------------- 1178
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
L +Q N+ + R F V D+G G+ Q + +F+SF Q D
Sbjct: 1179 -----------SLSLVEQQNDDVVLR--------FSVRDSGIGLTQEQQSKLFKSFTQAD 1219
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK+GGTGLGL+I + LV MGG I V + G+ + L SS K +
Sbjct: 1220 TSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVGQEL 1279
Query: 699 PNTVVVLATVGSMERMII 716
+++A + R I+
Sbjct: 1280 DGMSILVADDNATARDIM 1297
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 27/153 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L A+ S
Sbjct: 1421 LKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKL-----AQQS-------- 1467
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IR+ +P++A+TA+AM D++
Sbjct: 1468 ----------FDLVLMDCQMPVMDGYQATKAIRQRPE---LAQLPVIAMTANAMAGDKEM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR-LTKNMPS 1098
CL GMN ++ KPI+ + T+L+ L +PS
Sbjct: 1515 CLRAGMNDHIAKPIEVNLLYQTLLKYLGAPVPS 1547
Score = 47.8 bits (112), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 934 CSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML 993
C SS + L+G+ IL+A+D + + LE +G V V G +A+
Sbjct: 1266 CISSGQKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAI------- 1318
Query: 994 AAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-I 1052
++ S E + + L+D +MP +DG E +I++ +N P I
Sbjct: 1319 ----------MRCSQQE------YAVALIDWKMPNLDGIETAKQIKQQ-----TKNAPRI 1357
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ ++AHA + +G+ Y++KPI + R++ I+
Sbjct: 1358 LMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIM 1395
>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1765
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 158/265 (59%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS FLANMSHE+RTPM AIIG+ ++ +L +Q + + +I ++S +
Sbjct: 1026 AKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDAKQQNYIQKIDRASKS 1084
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++E+ +F L LE+L DMFSV+ S+ +E + ++ NIPR
Sbjct: 1085 LLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPNIPR 1144
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1145 HLLGDPLRLSQVLINLMNNAIKFTEQGEVLL---------SISQLE-------------- 1181
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R ++ + L F V D G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1182 ------------RVEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLG 1229
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV MGGEI V + G+
Sbjct: 1230 LAISKQLVELMGGEIGVESQFGNGS 1254
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + Q VA + LE+VG +S+ +G A+E L A +S
Sbjct: 1418 LQGKRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKL----AMQS--------- 1464
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT E+RK G N+P++A+TA+AM D +
Sbjct: 1465 ----------FDLVLMDCQMPVMDGYQATRELRKLP---GLANLPVIAMTANAMAGDREM 1511
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPI+ + S +L+
Sbjct: 1512 CLDAGMNDHIAKPIEVSLLYSRLLQ 1536
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 28/153 (18%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
K +EG+RIL+A+D + + LE +G V V G A+E
Sbjct: 1273 KHEIEGMRILVADDNATARDILRTTLESMGFVVDAVKSGSDAIERCQH------------ 1320
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+ + L+D QMP+M+G EA E+ +E E + ++ ++AHA
Sbjct: 1321 -----------THYPVALIDWQMPEMNGLEAA-EVIFAEQETPPK---VLIVSAHANAEF 1365
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTIL-RLTKN 1095
++ G+ Y+TKPI + R++ I+ L KN
Sbjct: 1366 LEQIERSGIAGYITKPISASRLLDGIMSSLGKN 1398
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 161/294 (54%), Gaps = 30/294 (10%)
Query: 408 SHLDARR-KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
+ LDA R AE + KS+FLANMSHE+RTPM +IG+ +L D L +EQ ++
Sbjct: 683 AELDAARINAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTD-LDSEQQHYARTVR 741
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
S+ +LL ++N ILD SK+E+G++++E +FDL+ L + M +V+ +E + +
Sbjct: 742 SSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMD 801
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI------IIRGWCE--NLDTSKNTAEF 578
N+P VRGD GR+ QI NL+ N++KFT G + ++ CE N +T +N+ +
Sbjct: 802 PNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIKVSRMVNDECENPNAETQENSHDL 861
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+R+ Q + M+ F V DTG GI + K +++FESF Q D
Sbjct: 862 ----------YRSSFTTQHSCLMH----------FSVRDTGIGIPEDKQDSLFESFSQVD 901
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
STTRK GGTGLGL+I R L MGG + G+ + LG E +Q
Sbjct: 902 ASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFTVRLGIQHEQQQ 955
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 68/184 (36%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q VA IL+K+G V +G + + AL Q P
Sbjct: 1120 RILVAEDNMVNQQVALGILKKMGLRADAVANGREVLHAL---------------QNIP-- 1162
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSES-------------------EHGARN-- 1049
+DL+LMD QMP+MDG +AT IR SE E ++N
Sbjct: 1163 ------YDLVLMDVQMPEMDGLKATRRIRASEVRGQKSEIRSQKSEVSDQRLESESQNSS 1216
Query: 1050 ------------------------IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
IPI+A+TA AM D ++C+ GM+ Y KP++ + +
Sbjct: 1217 IPESPNSSTPKSPNSSIPESQNPRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDEL 1276
Query: 1086 VSTI 1089
+
Sbjct: 1277 ARVL 1280
>gi|343497047|ref|ZP_08735129.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
gi|342820169|gb|EGU54997.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
Length = 1322
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 169/312 (54%), Gaps = 41/312 (13%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G + I+ V++ +L +LI +++ A+ + K FLANMSHE+RTPM AI+G+
Sbjct: 558 GIMGIVGTFMDVTETKRLERDLI---ESKESADKLSKIKGDFLANMSHEIRTPMNAIMGM 614
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
++ S D L +Q V +I SS LL ++N ILD SKVE+GK+++ENT+F+L K L+
Sbjct: 615 THLVLSSD-LGEKQRDYVEKIDYSSKQLLGIINDILDFSKVEAGKLQIENTDFNLDKVLD 673
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
L + SV+ N +E + ++S NIP + GDP R+ Q+ NL N++KFT +G +II
Sbjct: 674 NLASVLSVKAENKGIELIFNVSPNIPNQLIGDPLRLGQVLINLAGNAVKFTDTGEVIISV 733
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
E R + L F V+DTG G+
Sbjct: 734 SEE-----------------------------------LRNEKSAVLKFSVEDTGIGMTP 758
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT--LMQLYL 682
+ +F++F QGD STTRK+GGTGLGLSI + L+ MGGEI V G+ +L L
Sbjct: 759 EQMSGLFQAFSQGDTSTTRKYGGTGLGLSISQQLIQLMGGEIMVSSHYGRGSHFWFELEL 818
Query: 683 LLGASSESKQIY 694
+G +K+ Y
Sbjct: 819 DIGEERPTKERY 830
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 26/148 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G RILL ED Q +A ILE GA VS+ G++A++ L
Sbjct: 977 ISGTRILLVEDNITNQEIASTILENEGAQVSIANHGIEALDML----------------- 1019
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
D FD++LMD QMP MDG AT EIRK + + +P++A+TA+AM D +
Sbjct: 1020 ------DNHTFDVVLMDMQMPVMDGLTATKEIRKI---YDDKTLPVLAMTANAMREDVES 1070
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
C+ VGMNA++ KPI +++ I T+
Sbjct: 1071 CMNVGMNAHIAKPIHVPSLLAKISEFTQ 1098
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
++DL+L+D QMP+MDG + IRK + G++ ++ +TA+ D G ++
Sbjct: 881 QYDLLLVDWQMPEMDGVQTIEHIRKHDLSPGSK---MILITAYGNQLDFNDQYGHIIDGL 937
Query: 1076 LTKPIDSERMVSTIL 1090
+ KPI+ ++ TI+
Sbjct: 938 VLKPINPSNLLDTIV 952
>gi|403051784|ref|ZP_10906268.1| barA [Acinetobacter bereziniae LMG 1003]
Length = 934
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 152/265 (57%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + ++ D L+N+Q
Sbjct: 269 LEVQNITYKQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++E
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+P++V GD R Q+ +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYFADNVPKHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP M G + T IR ES +PI+ALTAHA+ +++K L VGM+ Y+
Sbjct: 715 FDLIFMDIQMPVMSGIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLKVGMDDYV 774
Query: 1077 TKP 1079
TKP
Sbjct: 775 TKP 777
>gi|445414131|ref|ZP_21433856.1| GHKL domain protein [Acinetobacter sp. WC-743]
gi|444764950|gb|ELW89255.1| GHKL domain protein [Acinetobacter sp. WC-743]
Length = 934
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 152/265 (57%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + ++ D L+N+Q
Sbjct: 269 LEVQNITYKQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++E
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+P++V GD R Q+ +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYFADNVPKHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP M G + T IR ES +PI+ALTAHA+ +++K L VGM+ Y+
Sbjct: 715 FDLIFMDIQMPVMSGIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLKVGMDDYV 774
Query: 1077 TKP 1079
TKP
Sbjct: 775 TKP 777
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 175/326 (53%), Gaps = 9/326 (2%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+++ ++ K+ ELI +AR +A + K++FLANMSHE+RTPM A+IG+ +L D
Sbjct: 900 ISSDITIRKKVERELI---EAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLL-D 955
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
LT EQ V I+ S ALL ++N ILD SK+ESGK+ELE F L+ +EE +D+FS
Sbjct: 956 TPLTAEQREYVETIRSSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECIDIFS 1015
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ ++E V + + +P V GD R+ QI NL++N++KFT SG +++ +
Sbjct: 1016 ATAAEKHLELVYFIHEKVPTKVSGDVTRLRQILVNLVSNAVKFTKSGEVVLE-----VQL 1070
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+ + +R A+ +D K L F V DTG GI + E +F
Sbjct: 1071 QQPREQNADERLMVFHDHDDDKYNYPQAALQQFDDKKCTLHFTVRDTGIGIPADRLERIF 1130
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
SF Q D STTRK+GGTGLGL+I + L M G++ V + G+ + L ++K
Sbjct: 1131 HSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGSTFHFTITLERLPDTK 1190
Query: 692 QIYDADFPNTVVVLATVGSMERMIIS 717
Y + ++ + R I+S
Sbjct: 1191 GEYSSKLAGKHALIVDDNATNRRILS 1216
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 38/157 (24%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R++P + S + R + LRIL+AED + Q + +ILEKVG V +G + +EAL
Sbjct: 1326 REKPKPKTKVSIDLAREIP-LRILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEAL 1384
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ +DLILMD QMP+MDG AT I +N
Sbjct: 1385 K-----------------------SKTYDLILMDVQMPEMDGLTATRYI--------CQN 1413
Query: 1050 IP------IVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
P I+A+TA+AM D + CL GM+ YL+KP+
Sbjct: 1414 WPRLERPFIIAMTANAMKGDREACLEAGMDDYLSKPV 1450
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ ++D MP+MDG +E+RK +++P+V LT+ + +GVG +A+L
Sbjct: 1245 FDVGILDFHMPEMDGLMLAMELRKLPQ---TQDLPLVMLTSAGNRETVSETVGVGFSAFL 1301
Query: 1077 TKPIDSERMVSTI 1089
KPI ++ +
Sbjct: 1302 NKPIKQSQLYDVL 1314
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 13/306 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I +++ K+ + ++ ++AEA++ KSQFLA +SH
Sbjct: 394 LAITTSIGILVIALLIGYIFHATMNRIAKVEDDCHKMMELTKQAEAADVAKSQFLATVSH 453
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L +L D N+Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 454 EIRTPMNGVLGMLHMLMDTDLDANQQ-DYVRTAQDSGKALVSLINEVLDQAKIESGKIEL 512
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E +FDL+ +++++ +FS + +E + +SD +P + GDPGR QI +NL+ NSI
Sbjct: 513 EEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGVPEMLIGDPGRFRQIITNLMGNSI 572
Query: 553 KFTSSGHII-----IRGWCENLDTSKNTAEFPT-------DRKKFGRAFRTKLKQQANNA 600
KFT GHI + +++D ++ T DR++ F+ ++ +++
Sbjct: 573 KFTKKGHIFLTVHPVEEVMDSIDVETESSSLNTLSGLPVADRRRSCAGFKIFSREGSSHT 632
Query: 601 MNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
++ + + L V+DTG GI VF F Q DPS +RK+GGTG+GLSI + LV
Sbjct: 633 LSPSSSDLVNLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVG 692
Query: 661 KMGGEI 666
M GEI
Sbjct: 693 LMNGEI 698
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 28/153 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G +IL+ +D + IVA L+K GA V G A++ L
Sbjct: 891 LVGRKILIVDDNKVNLIVAAAALKKYGAEVICADSGKMAIKLLK---------------- 934
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P +FD MD QMP+MDG+EAT IR ES +IPI+A+TA + A ++
Sbjct: 935 -PPH-----QFDACFMDIQMPEMDGFEATRRIRDMESNG---HIPILAMTADVIQATYEE 985
Query: 1067 CLGVGMNAYLTKPIDSERM---VSTILRLTKNM 1096
C GM+ Y++KP ++E++ VS L+ T N+
Sbjct: 986 CQRCGMDGYVSKPFEAEQLYQEVSRFLQPTSNV 1018
>gi|402573935|ref|YP_006623278.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
gi|402255132|gb|AFQ45407.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
Length = 1259
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 217/446 (48%), Gaps = 75/446 (16%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KSQFLANMSHE+RTPM AI+GL +L+ D L + Q S V + +++S ALLR++N ILD
Sbjct: 541 KSQFLANMSHEIRTPMNAIMGLTHLLRQSD-LKDTQKSYVLKTEEASKALLRIINDILDF 599
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+GK+E+E +F+L K LE + +++++ +N ++ D + +P + GDP R+ Q
Sbjct: 600 SKIEAGKLEIEMIQFNLDKVLENISNLYTISATNKGIDINFDRGEAVPDELIGDPLRLEQ 659
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I SNLI N+IKFT G + + R F
Sbjct: 660 ILSNLITNAIKFTDQGEVNVS----------------------VRVFE------------ 685
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
++K+ L F V DTG GI + +F +F Q D STTRK+GGTGLGL+I + LV M
Sbjct: 686 -ETEDKVKLHFRVTDTGIGIKEEHIGKLFTAFTQADGSTTRKYGGTGLGLTISKQLVELM 744
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRK 722
G+I V GT ++ L S + AD+P+ LR
Sbjct: 745 KGDIWVESVYGEGTSFEVLLQFEKDSALIKPNFADYPD-------------------LRG 785
Query: 723 KKVSTLETSEWHGLTQ--ILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780
KKV ++ H T IL +L S + + P+ + E + + ++
Sbjct: 786 KKVLVVD----HNKTSLVILERMLCSFS-LEVTALNNPFEAIELMHQKDFDL-------- 832
Query: 781 VVVIDIALLDLSS-DLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTK 839
+V+D L DLS ++++ + + +I K +F ++ +L G + K
Sbjct: 833 -LVLDYNLPDLSGIEMYKRLVANTEITLPKTIFVSAAGRESYYAQANQL---GIKYFLVK 888
Query: 840 PLYKGKMIQLLETAVRGKILGMQNRI 865
P+ + M + A++G+ NRI
Sbjct: 889 PINQSLMFDAVMNALKGRAWSQANRI 914
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 26/161 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
++ L G R+LL ED + Q+VA ILE+ G VS+ +G +A++ ++
Sbjct: 923 HRQKLAGKRLLLVEDNEINQLVAKDILEQAGIHVSIADNGQEAIKYVH------------ 970
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
R+D +LMD QMP MDGY AT +R+S + + +PI+A+TA+A+
Sbjct: 971 -----------GNRYDALLMDVQMPIMDGYRATEILRES---YSSEELPIIAMTANALRG 1016
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
D +K + GMN Y++KPID + T+ + + S++ GT
Sbjct: 1017 DREKSIEAGMNDYISKPIDPILLFETLEKWLVSKNSKSFGT 1057
>gi|434399975|ref|YP_007133979.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428271072|gb|AFZ37013.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 811
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 248/545 (45%), Gaps = 93/545 (17%)
Query: 209 VSKFTNSPL-LSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQ 267
V FT L ++A+ P++D + VVGV LS + +++ + G I++ +
Sbjct: 190 VYTFTGGELGITASGPLYD---RQGNFQGVVGVDLVLSLISDVLRNIEISPHGEIFIVDR 246
Query: 268 EGYLLATSTNAPLLTNSSTGPNL----VKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIH 323
G+L+ATST+ +S GPNL +KA DS NPV++ A++L + +
Sbjct: 247 NGFLIATSTDEEPFIHS--GPNLREQSIKATDSGNPVLKNTARYLTKNFQNLNRINQAEQ 304
Query: 324 VQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILV 383
V G KQ + + L + V+++P M T+ + + A V +
Sbjct: 305 VDFLLDGKKQLVQVLPYQDQLGLDWLIVVVVPEADFMRGIHANGRMTIWLCLLALVLASM 364
Query: 384 IGCICILILTNGV-------------------------------SKEMKLRAELISHLDA 412
+G + IL + KE+++ AE + +
Sbjct: 365 VGILTSRILAQPILRLSQVSKIIAQSARLRNTATDLYPIVRVKGIKELEVLAESFNEMTH 424
Query: 413 RRKA------------------------------EASNNYKSQFLANMSHELRTPMAAII 442
R KA +A+N KS+FLANMSHELRTP+ AI+
Sbjct: 425 RLKAAFVDLDRTNQDLELRVEQRTAALLQAKQAADAANQAKSEFLANMSHELRTPLNAIL 484
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G ++L D L + + I S LL L+N +L++S++++G++ L+ FDL +
Sbjct: 485 GFTQLLLQDSSLNPKHQQNLEIINSSGEHLLTLINDVLEMSRLQAGRVTLQLESFDLYQM 544
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
L +L MF + N++ + NIP+ ++ D ++ Q+ NL++N++KFT G I +
Sbjct: 545 LNDLEVMFKPRAEAKNLQLSFECDANIPQFIQTDQQKLRQVLINLLSNALKFTQVGAIAL 604
Query: 563 RGWCENLDT--SKNTAEFPTDRKKF---GRAFRTKLKQQANNAMNFREDNKLALCFEVDD 617
R + T NT E F G A + ++ L FEV+D
Sbjct: 605 RVAAFSFSTKAQSNTIEGINASSTFLTQGTAHQP----------------QMTLTFEVED 648
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL 677
TGCGI S++E++F++F Q ++H GTGLGL+I + +GG+I V GT+
Sbjct: 649 TGCGIAASEFESIFDAFAQAK-KVPKEHEGTGLGLAISNQFIRLLGGDISVSSIVGEGTI 707
Query: 678 MQLYL 682
++ YL
Sbjct: 708 LKFYL 712
>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
Length = 1398
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 159/286 (55%), Gaps = 37/286 (12%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E++ R E + +DAR AE++N KS+FLANMSHE+RTPM +IG+ +L D L++EQ
Sbjct: 845 ELRFRHE-TALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTD-LSDEQ 902
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ S +LL ++N ILD SK+E+GK+ELE+ FDL+K LE + ++ N
Sbjct: 903 RDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKN 962
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E +S +P +GDPGR+ QI +NL N+IKFT +G++ +
Sbjct: 963 LEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTV---------------- 1006
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ Q+ N + L F V DTG GI ++K + +F+SF Q D
Sbjct: 1007 -------------AVSMQSEN------NGDAVLRFSVKDTGIGIPEAKLDRLFKSFTQVD 1047
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
STTRK+GGTGLGL+I R LV MGG+I V+ G+ + L
Sbjct: 1048 ASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGNGSEFWFTIFL 1093
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 80/143 (55%), Gaps = 23/143 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LE RILLAED+ + Q+V +L K G V VV +G + V+ L ++R+
Sbjct: 1267 LEHYRILLAEDSRVNQMVVIGVLTKFGYGVDVVSNGQECVDVL---------QKRT---- 1313
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+DL+LMD QMP MDG AT IR S+ NIP++ALTAHAM D +
Sbjct: 1314 ----------YDLVLMDVQMPVMDGLNATGIIRDPASKVLDHNIPVIALTAHAMQGDRES 1363
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
CL GMN Y++KPID+ + TI
Sbjct: 1364 CLYAGMNDYISKPIDASVLTETI 1386
>gi|388255746|ref|ZP_10132927.1| MmoS [Cellvibrio sp. BR]
gi|387939446|gb|EIK45996.1| MmoS [Cellvibrio sp. BR]
Length = 794
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 158/293 (53%), Gaps = 38/293 (12%)
Query: 399 EMKLRAELISHLDARRK---AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
E+ L E L+ RR+ AE ++ KSQFLA MSHE+RTPM +IG+LE+L+ D L
Sbjct: 244 EIALLTEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLEMLR-DTPLD 302
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+ Q + I +S LL ++N ILD SK+E+GKMELE T F+L + +E V +F +
Sbjct: 303 DNQKHYIDVIHRSGETLLTIINDILDYSKIEAGKMELEETTFELDELVENCVQLFGATAN 362
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E L +PR +RGDP R+ QI NL+ N+ KFTS G I
Sbjct: 363 KRQIELFGGLLPGVPRWLRGDPTRLRQIIINLLGNAFKFTSEGFI--------------- 407
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
+ + + QQ +N +++ L F V D+G GID S +F+SF
Sbjct: 408 ------------SLQVSVLQQLDN-------DRVELHFAVQDSGIGIDMSSAGNLFDSFN 448
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
Q D STTRK+GGTGLGL+I ++L MGG+I V + G+ + L S
Sbjct: 449 QADASTTRKYGGTGLGLAICKSLAELMGGKIGVESEKGRGSTFWFTVRLAQES 501
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 21/131 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+L+AED P+ ++V +L K+ S+VP V A N + A ++++++
Sbjct: 666 LRVLVAEDNPVNRMVIKGLLGKL----SIVP-----VFAENGVEACDAAQQQK------- 709
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
RF+L+LMDC+MP+MDG+EAT IR E G IPI+ALTAHA+ +
Sbjct: 710 -----NRFNLVLMDCEMPEMDGFEATRSIRDYERREGLTPIPIIALTAHALQEHREAVFA 764
Query: 1070 VGMNAYLTKPI 1080
GMN YL+KPI
Sbjct: 765 CGMNYYLSKPI 775
>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1191
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 36/273 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+N+ KS FLANMSHE+RTPM +IG+ E+L D L EQ + +K SS A
Sbjct: 533 AKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLL-DTTLDAEQQEYLNIVKSSSEA 591
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLR++N ILD SK+E+GKM++E+ F+L++ + + + ++ + +E V D++ ++PR
Sbjct: 592 LLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVVWDVAPDVPR 651
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDPGR+ Q+ N++ N+IKFT G +++R
Sbjct: 652 ALVGDPGRLRQVLVNILGNAIKFTERGEVVLR---------------------------- 683
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++Q+ + + K L V DTG GI +K ++F++F Q D STTRK+GGTGLG
Sbjct: 684 -IRQEVAS------NGKPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLG 736
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
L+I LV MGG I V G++ + L
Sbjct: 737 LTICARLVEGMGGTIWVESTPGQGSVFHFTVAL 769
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 26/150 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILL ED + Q +A +L++ G V V +G A++ L
Sbjct: 935 LDILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDML-------------------- 974
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
P P +DLILMD MP MDG EAT IR +E R IPI+A+TA+AM +D CL
Sbjct: 975 --PKRP-YDLILMDMMMPVMDGLEATRHIRANER---GRRIPIIAMTANAMESDRNLCLE 1028
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
GM+ Y+ KPI SE + IL+L+ P E
Sbjct: 1029 AGMDDYIAKPIKSEELQQKILQLSHAAPEE 1058
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+GL IL+ +D + + V C +L GA S G A++ L++ AA
Sbjct: 785 LDGLHILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAAN---------- 834
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++ P DL+L+D QMP+MDG+ +R + ++P+V L++ M D ++
Sbjct: 835 --AQVP----CDLVLLDGQMPEMDGFSTAPLVRGLPN---CSSLPMVLLSSAGMKGDGQR 885
Query: 1067 CLGVGMNAYLTKPI---DSERMVSTILRLTKNMP 1097
VG+ YL+KPI D +MVS +L++ K P
Sbjct: 886 SRQVGIAGYLSKPIARQDLLQMVSGVLQMHKVRP 919
>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
gi|119863342|gb|ABM02819.1| amino acid-binding domain sensor hybrid histidine kinase
[Psychromonas ingrahamii 37]
Length = 1574
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 150/274 (54%), Gaps = 36/274 (13%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
R +N KS+FLANMSHE+RTPM AIIGL E+ + D +T + + +I S +LL
Sbjct: 818 RAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQD-MTPQLRDYLSKIHSSGNSLL 876
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
++N ILD SK+E+GK++LEN EF L L+ + + F + N+E + + ++P ++
Sbjct: 877 GIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWHL 936
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GDP R QIF+NLINN+IKFT+ G I I C
Sbjct: 937 VGDPLRTGQIFTNLINNAIKFTNKGQITICASCLE------------------------- 971
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
++D ++ L F V DTG GI + + ++FE F Q D ST+RKHGGTGLGLS
Sbjct: 972 ----------KDDKQVRLLFSVADTGLGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLS 1021
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
I + LV +M G I + + G++ L G S
Sbjct: 1022 ICKRLVEEMNGRIWIESEQGKGSVFSFELEFGVS 1055
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 37/213 (17%)
Query: 890 QKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSS-RRDQPCSSSNSSSNQKRILE 948
QK ++ F+ + P S E ++ T+F R I + +R S+ + +
Sbjct: 1166 QKSKQVGFDSFVLKPVNRSILVETIL-TVFGYRDDINKNLKRKIKVDSARLDA-----IG 1219
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G +ILL +D + + VA + LE G V+ +G +AV ++ +
Sbjct: 1220 GAKILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSVKSHV--------------- 1264
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH-------GARNIPIVALTAHAMN 1061
FD +LMD QMP++DGYEAT +IR+ E G+ +PI+A+TAHAM
Sbjct: 1265 --------FDAVLMDVQMPEIDGYEATQKIRRWEKTRVDLQPTDGSPVLPIIAMTAHAME 1316
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D+++CL GMN Y+TKPID+ ++ + R K
Sbjct: 1317 GDKERCLAAGMNDYVTKPIDTRQLFEALSRWIK 1349
>gi|373457781|ref|ZP_09549548.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371719445|gb|EHO41216.1| multi-sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 1291
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 158/293 (53%), Gaps = 43/293 (14%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LR +I +AEASN KS+F+ANMSHELRTP+ AIIGL++++ + L Q
Sbjct: 879 ESRLRHAII-------QAEASNKAKSEFIANMSHELRTPLNAIIGLIDLMDQSN-LNETQ 930
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ +K S+ LL+++N+ILD SK+ESGK+ELE FDL++ + + + FS+
Sbjct: 931 KEFLQTVKFSARELLKIINQILDFSKIESGKLELEFIPFDLEQLVTHIANAFSIMARQKG 990
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ L+ N P++V+GDP R+ Q+ NLI N+IKFT G + ++ KN +E
Sbjct: 991 LTFKLEWDKNNPKHVKGDPTRLGQVLINLIGNAIKFTEKGSVTLKV------IKKNESE- 1043
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
N++ F V DTG GI Q K + +F SFEQ D
Sbjct: 1044 ----------------------------NEIDFLFVVQDTGIGIPQDKIDKIFNSFEQVD 1075
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
S TRK GGTGLGL+I L+ MG +IKV + GT + L + K
Sbjct: 1076 SSLTRKFGGTGLGLTITSRLIEMMGSKIKVASQPDVGTTFEFELTFPKVKDQK 1128
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 895 CSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSS----NSSSNQKRILEG- 949
+FEF P + E+L H+ QP SS S QK E
Sbjct: 1113 TTFEFELTFPKVKDQKVEELPDFSLFLTHE-------QPRLSSEMMIKESEPQKETKEDE 1165
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+ ILL ED + Q VA +++E +G V V G +A++ +
Sbjct: 1166 VTILLVEDNVINQRVAKRMVENMGYKVEVANHGQEALDMMK------------------- 1206
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE---SEHGARNIPIVALTAHAMNADEKK 1066
++DL+L+D QMP +DG +IR E EH IPI+A+TAHA D +
Sbjct: 1207 ----NKKYDLVLLDVQMPVLDGLRTAQKIRVKELNTEEH----IPIIAMTAHAQKEDRDR 1258
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
CL GM+ YL+KPI+ + + I KN
Sbjct: 1259 CLEAGMDDYLSKPINMKMLEEKINHYLKN 1287
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 151/288 (52%), Gaps = 37/288 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+A+A+N KS+FLANMSHE+RTPM +IG+ E+L L EQ I S LL
Sbjct: 329 EADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRS-TLDKEQKKFAETINASGKNLLH 387
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
LLN ILD SK+E+ K+E+E +F+L L+E+++MFS + + ++IP +R
Sbjct: 388 LLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLLLR 447
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI NLI+N+IKFT G I++ E D FG R +
Sbjct: 448 GDPGRIKQILVNLISNAIKFTDEGEILV------------NVELEED---FGDNARIR-- 490
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
F V DTG GID+S+ + +FE F Q D ST RK+GGTGLGLSI
Sbjct: 491 ------------------FTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSI 532
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY-DADFPNT 701
L MGG I+V S G++ + QIY D P T
Sbjct: 533 SNKLARNMGGRIQVRSTPSQGSMFYFSIDFIKQQHPDQIYADISIPLT 580
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 23/131 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
RILL ED+ + Q+V +L+K G VV +G +A+ AL ++
Sbjct: 730 FRILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKV----------------- 772
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+LMDCQMP+MDGYEAT IR+ + +PIVA+TA+AM D ++CL
Sbjct: 773 ------HYDLVLMDCQMPEMDGYEATRCIRRGQGNVMNPEVPIVAITANAMTGDRERCLQ 826
Query: 1070 VGMNAYLTKPI 1080
GM+ Y+ KP+
Sbjct: 827 AGMDDYMAKPV 837
>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
Length = 559
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 151/265 (56%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE + K++FLA MSHE+RTPM +IG++++L D +L +EQ I+ S+ A
Sbjct: 158 AKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLL-MDSELQDEQREYATIIRNSADA 216
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ ++N ILD SK+ESGKMELE FDL+ ++E+ +FS + S N+E + D IP
Sbjct: 217 LVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPS 276
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD GR+ Q+ NL++N++KFT+ G + L S A
Sbjct: 277 MVFGDMGRLRQVLVNLVSNAVKFTNEGGVY-------LVVSLAKA--------------- 314
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
E+N+L L F V DTG GI K + +F+ F Q D S TR++GGTGLG
Sbjct: 315 -------------EENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLG 361
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I ++LV MGGEI+V K G
Sbjct: 362 LAICKSLVQMMGGEIEVDSKEGEGA 386
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 33/182 (18%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLR--ILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
+ + + P S++ R+ G + IL+ +D P+ + + +LEK+G + DG
Sbjct: 394 VHTHEEEHPRLREEEHSDKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMIADMAEDG 453
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
QAVE M A + +D+I MD QMP MDG EA IR+ +
Sbjct: 454 RQAVE----MAAGPKA------------------YDMIFMDLQMPVMDGLEAARLIRQMK 491
Query: 1043 SEHGARNIPI-VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL-TKNMPSEA 1100
E A P+ +A+TA+ M+ +K+C GMN Y++KP+ +S + L ++ MP E
Sbjct: 492 PEADA---PVLIAMTANVMDGIQKRCFDAGMNEYISKPVK----ISCVKHLISRYMPVEP 544
Query: 1101 TG 1102
G
Sbjct: 545 DG 546
>gi|392553060|ref|ZP_10300197.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
spongiae UST010723-006]
Length = 1422
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 148/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+ K +FLA+MSHE+RTPM +IG+LE+++ D L +EQ + K S+ +
Sbjct: 884 AKVNAEAAMVAKDEFLASMSHEIRTPMNGVIGMLELMQ-DSPLNDEQTHRLTIAKNSANS 942
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+ K+ELE +FDL L ELV++F+ + +E +LD +
Sbjct: 943 LLNLINDILDFSKIEADKLELEQIQFDLHLLLSELVELFATRAEQKQLELILDTVNLNEH 1002
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDPGR+ QI SNLI N+IKFT G II+ +A D + + R
Sbjct: 1003 FVIGDPGRIRQILSNLIGNAIKFTHQGEIIV------------SAALCDDSEHYWR---- 1046
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L V DTG GI + K + VFE F Q D STTR +GGTGLG
Sbjct: 1047 -------------------LTLAVKDTGIGISKEKHQHVFELFSQEDSSTTRNYGGTGLG 1087
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+IV+ L N M G+I + + G+
Sbjct: 1088 LAIVKRLCNHMDGDISLTSATNEGS 1112
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L L LL ED + Q+VA IL K+ T + +GL AV N++ A Q
Sbjct: 1293 LPQLNALLVEDNKVNQMVAKGILSKLKLTCDIAENGLDAV---NKLKA----------QS 1339
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+P +D+I MD QMP+MDGY+AT IR+++ ++ I+A+TA+AM D++K
Sbjct: 1340 TP--------YDVIFMDIQMPEMDGYQATNAIRQNQCGEQHQHTTIIAMTANAMEGDKEK 1391
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
CL GMN Y++KPI + + T+
Sbjct: 1392 CLAAGMNEYISKPISIDDVKDTL 1414
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 936 SSNSSSNQKRI-LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
++ SS +Q + + GL IL+ +D + K L+ GA V+ +G +A+ N + A
Sbjct: 1123 ANQSSLSQPNVAISGLNILVVDDNETNCEILAKQLKNWGAKVTTFSNGQEALARCNALKA 1182
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
+E+ FD+ ++D QMPKM G E+ K++++ A I ++
Sbjct: 1183 SET------------------LFDVAILDMQMPKMSGEMLAKEL-KADNQLAA--IKLIM 1221
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
+T+ D K+ +G + Y KP S + + + + N
Sbjct: 1222 MTSMQHKGDAKRFAEIGFDGYFPKPATSADLRAALQIIVDN 1262
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 147/288 (51%), Gaps = 36/288 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L A+ AEA++ KS FLA MSHE+RTPM ++G+ E+L D L +EQ ++ S
Sbjct: 260 LRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLL-DSGLNHEQRHFAEAVENSG 318
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD SK+ESG +ELE EF+L LE+ + MF+ +E + DL +
Sbjct: 319 RHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLPPEV 378
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
R VRGDP R+ QI NL NN+IKFT G +++
Sbjct: 379 RRCVRGDPFRLRQIVGNLANNAIKFTERGEVVV--------------------------- 411
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
R +L + + R V+DTG GI + +FE F Q D STTR+ GGTG
Sbjct: 412 RARLLGEGTDGYRLR--------ISVEDTGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTG 463
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD 697
LGL+I R LV MGGEI V + G + L L A + + D
Sbjct: 464 LGLAICRRLVGLMGGEIGVDSRPGAGACFHIDLCLPAGQSTAEALRCD 511
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 26/156 (16%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
++ + +++ R G R+LLAED P+ Q V +L K+G V V DG +AV+ LAA
Sbjct: 647 AATAVADEWRPTRGGRVLLAEDNPVNQQVGLAMLAKLGIAVRVANDGEEAVK-----LAA 701
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
T FDLILMDC MP +DGYEA+ IR SE H R +PIVAL
Sbjct: 702 ------------------TEAFDLILMDCHMPVLDGYEASAAIRASE--HAPR-VPIVAL 740
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
TA+ M + ++CL GM+ +L KP E++ ST+ R
Sbjct: 741 TANVMEGNRERCLAAGMDDFLAKPYALEQLQSTLQR 776
>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
Length = 1367
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 150/271 (55%), Gaps = 38/271 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
++R AEA+N KSQFLANMSHE+RTPM I G LE+L + QL+ Q + ++K SS
Sbjct: 847 SKRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELL-NHSQLSQVQREYIREVKSSSET 905
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+ESGK+ LEN F+L+ +E+ + +F ++E + N+P
Sbjct: 906 LLHLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLFVPTAYEKHLELYTQIKANVPD 965
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R+ QI SNLI+N++KFT +G + I ++T + F T R
Sbjct: 966 EVSGDPSRLKQILSNLISNALKFTENGEVSIV-----VETVEEKNGFATIR--------- 1011
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
FEV DTG GI + + +F F+Q D STTRK+GGTGLG
Sbjct: 1012 ---------------------FEVRDTGIGIPKEDTKRIFRPFDQADASTTRKYGGTGLG 1050
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L+I + LV M G I V + PG Y
Sbjct: 1051 LAITKELVTIMKGTIGV--DSVPGQGSTFYF 1079
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 78/142 (54%), Gaps = 26/142 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++LL ED + + V L+ G T V DG +A E ML +
Sbjct: 1252 KLLLVEDNEVNRKVVLATLKSRGMTCDVAMDGQEAYEV---MLKKD-------------- 1294
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+ MDCQMP MDGYEAT +IR++E G+++ I+A+TA+AM D++KCL
Sbjct: 1295 ------YDLVFMDCQMPVMDGYEATKKIREAE---GSKHTKIIAMTANAMMGDKEKCLEA 1345
Query: 1071 GMNAYLTKPIDSERMVSTILRL 1092
GM+ Y++KPID E M I L
Sbjct: 1346 GMDDYISKPIDFEEMFKIIDEL 1367
>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1548
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 179/358 (50%), Gaps = 40/358 (11%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDD 452
G +++ LR + L A+ AE + KS FLANMSHE+RTPM AIIG+ + LK+
Sbjct: 719 GALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKT-- 776
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
+L Q V +I+ S LL +LN ILD SK+E+GK+ +ENTEF+L+ L+ + ++ S
Sbjct: 777 ELDPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSE 836
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ + +E VLD++ N+P +RGDP R+ QI N NN++KFT G I+I E L+T
Sbjct: 837 KAATKGLEFVLDVAANVPPVLRGDPLRLGQILINYANNAVKFTEHGEIVIH--VETLETG 894
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
D + L F V DTG G+ + +F
Sbjct: 895 ---------------------------------DTDVLLRFAVRDTGIGLTDEQKARLFV 921
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
SF+Q D STTRK+GGTGLGL+I + L + MGG + V G+ LG S +
Sbjct: 922 SFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGGSTFWFTARLGLGSGRRA 981
Query: 693 IYDA-DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISP 749
+ D V++ RM+++ L + +LRE D +P
Sbjct: 982 LLPRIDLRGLRVLVVDDNPQARMVLAHMLEGMTFRPVMADGGETALDLLREARDADTP 1039
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL ED L + VA +L + G DG QAV R +++G
Sbjct: 1135 VRGSRVLLVEDNELNREVALGLLAEAGLVPDAAEDGAQAV--------------RMVMEG 1180
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+DL+LMD QMP MDGYEAT IR+S A ++PIVA+TA+AM +D +
Sbjct: 1181 D---------YDLVLMDVQMPVMDGYEATRIIRRSRE---ADSLPIVAMTANAMRSDREA 1228
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPID + + + ++R
Sbjct: 1229 CLAAGMNDHVAKPIDPDELFAALIR 1253
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
L GLR+L+ +D P ++V +LE G T V+ DG + AL+ + A +
Sbjct: 988 LRGLRVLVVDDNPQARMVLAHMLE--GMTFRPVMADGGET--ALDLLREARDA------- 1036
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
DTP F ++ +D QMP MDG E IR A ++P+ +TAH
Sbjct: 1037 -------DTP-FGMVFLDWQMPGMDGLETARNIRTL-----APDLPVAIVTAHGREEIFA 1083
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRL 1092
GVG++A L KP+ + T +RL
Sbjct: 1084 ASEGVGVSAVLVKPVQPSLLFDTAMRL 1110
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 173/313 (55%), Gaps = 39/313 (12%)
Query: 368 YKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFL 427
YK L ++I AS+ IL++ + L + L EL+ +A+ AE S K+ FL
Sbjct: 178 YKYLQLIIYASIFILLMATLFYLFAVKIKNNINTLSRELV---EAKEIAEESVKTKAIFL 234
Query: 428 ANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 487
A+MSH++RTPM +IG+L +L + +L + Q K S+ ALL L+N ILD SKVE+
Sbjct: 235 ASMSHDIRTPMNGVIGMLGLL-MNSKLDDTQKHQASLAKSSAKALLSLINDILDFSKVEA 293
Query: 488 GKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNL 547
GKM+LE +F+++ EL + + + + VE +L+++D ++ DPGR+ QI SN+
Sbjct: 294 GKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILEVTDIEQNMIKADPGRIRQILSNI 353
Query: 548 INNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 607
+ NSIKFTS G I I+ LD ++ PTD +
Sbjct: 354 VGNSIKFTSEGFIAIKAI---LDVTE-----PTDAR------------------------ 381
Query: 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 667
L E+ D+G GI + K +T+F+SF Q D STTRK+GGTGLGL+IV L M G+++
Sbjct: 382 ---LIIEMSDSGIGIPEDKIDTLFDSFSQVDASTTRKYGGTGLGLAIVEKLCELMNGKVE 438
Query: 668 VVKKNSPGTLMQL 680
V G++ +
Sbjct: 439 VKSDFGKGSIFTI 451
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 22/163 (13%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+ D SS N Q I E ILL ED Q+VA +LE G + +G++A+E
Sbjct: 591 KDDNFFSSENIEEEQDPIFES-NILLVEDNITNQLVANGMLEDFGLEADIANNGIEALEM 649
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
LN + +++LI MDCQMP++DGY AT IR ++
Sbjct: 650 LN---------------------SSSKKYNLIFMDCQMPELDGYGATQAIRAEQAGERYT 688
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
NIPI+A+TA+AM D++KC GM+ YL KPID E + + +L+
Sbjct: 689 NIPIIAMTANAMQGDQEKCRSAGMSDYLAKPIDKELLKNILLK 731
>gi|365540216|ref|ZP_09365391.1| hybrid sensory histidine kinase BarA [Vibrio ordalii ATCC 33509]
Length = 925
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 153/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 279 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ ++ +E L + IP
Sbjct: 337 NLLNIINDILDFSKLEAGKLALENIPFEFQESLEEVVNLQAISAHEKGLEITLKVDQKIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NL+ NSIKFT G N+D S
Sbjct: 397 AGLVGDPLRIQQVLTNLVGNSIKFTERG---------NIDIS------------------ 429
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q DN + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 430 VELRSQ--------RDNVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LVN MGGEI + + G+
Sbjct: 482 GLVITQKLVNHMGGEISLTSRLHQGS 507
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 27/141 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+++ +D P + +L++ TV +G +AVE ++SR++
Sbjct: 664 LKVMAVDDNPANLKLIMALLQERVETVIACTNGQEAVE--------QASRQK-------- 707
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD+ILMD QMP+MDG A EI+K+E H P++A+TAHAM + + L
Sbjct: 708 -------FDMILMDIQMPQMDGVTACQEIKKTELNH---QTPVIAVTAHAMIGERDRLLK 757
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 758 AGMDDYLTKPIE-EHILQQVL 777
>gi|449299347|gb|EMC95361.1| hypothetical protein BAUCODRAFT_72144 [Baudoinia compniacensis UAMH
10762]
Length = 1362
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 177/346 (51%), Gaps = 55/346 (15%)
Query: 340 FLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKE 399
F + + LP++ R+ G D Y+ ++ +S V L + ++E
Sbjct: 678 FYSTRLLPML------RQERKGGLDGETYRDGVVGVSMDVTEL-----------HQAAEE 720
Query: 400 MKLRAELISHLDARR-KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTN 456
+K+R S L A+ A ++ KSQFLANMSHE+RTP+A +IG+ EIL DD QLT
Sbjct: 721 VKMRERENSRLMAQSVAAREASKMKSQFLANMSHEIRTPIAGVIGMAEILLDDDSGQLTK 780
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
EQ I++S+ LL ++N ILD SKVESG++++E +FDL + ++ M
Sbjct: 781 EQKECAENIQRSANGLLTVINDILDFSKVESGRLDIEEVQFDLSVVIRDVNKMLGFAAER 840
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
+ + D+ D V GDPGR+ Q+ +NL+ NSIKFTS G + +R W E + TA
Sbjct: 841 KGLRYIDDIQDLKSWKVMGDPGRLRQVMTNLLTNSIKFTSEGSVTMRVWPE-----RETA 895
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
E + + F V+DTG GI++ + +F+ F Q
Sbjct: 896 E------------------------------TVEVHFLVEDTGIGIEEEVRQKLFKPFSQ 925
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
D ST R+ GGTGLGL+I + LV M G+I + K GT ++
Sbjct: 926 ADSSTARRFGGTGLGLTISKNLVELMHGKISLDSKLGVGTKATFWI 971
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 27/160 (16%)
Query: 924 QIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
Q+ S QP S S + IL+ ED P+ Q +A K ++K+G V V +G
Sbjct: 1035 QVWPSDAPQPALSEEERSKTQ-------ILVVEDNPINQQIALKTIKKLGFPVKAVWNGQ 1087
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE- 1042
+A++ L + ++ + PR D+ILMD QMP MDGY AT IR +
Sbjct: 1088 EALDYLQQ-----------------PDSKENPRPDIILMDVQMPIMDGYRATYTIRNAAP 1130
Query: 1043 --SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
S ++ PIVA+TA A+ D +KC GM+ YL+KP+
Sbjct: 1131 FVSNPEVQSTPIVAMTASAIQGDREKCQMAGMDDYLSKPV 1170
>gi|254411490|ref|ZP_05025267.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181991|gb|EDX76978.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1342
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 149/267 (55%), Gaps = 36/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++AR A + +KS+FLANMSHE+RTPM ++G++ +L QLT+ Q I++S+
Sbjct: 653 VEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQT-QLTSRQRDYAQTIRRSA 711
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD SK+E+G+MELE EFDL +E ++D+ + Q N+E + +
Sbjct: 712 DHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVDRKV 771
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GDP R+ Q+ NL NN+IKFT G ++I E TSKN
Sbjct: 772 PRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETA-TSKNA-------------- 816
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V DTG GI E +F+SF Q D STTR++GGTG
Sbjct: 817 --------------------TLHFAVSDTGVGISPEGQEKLFQSFSQVDNSTTRQYGGTG 856
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I + LV+ MGGEI V + G+
Sbjct: 857 LGLAICKQLVDLMGGEIGVESQVGKGS 883
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 26/136 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED P+ Q V L+ +G P+G +E L ++S
Sbjct: 1062 LNILLAEDHPINQQVILNQLQMLGYEADCAPNGQVVLE-----LVEQNS----------- 1105
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ILMDCQMP +DGY T ++ + +G+ + I+ALTAHA D ++C
Sbjct: 1106 -------YDIILMDCQMPVLDGYATTTKLIE---RYGSTHPVIIALTAHAFPEDRERCSA 1155
Query: 1070 VGMNAYLTKPIDSERM 1085
VGM+ Y++KP+D E +
Sbjct: 1156 VGMDDYISKPVDEEML 1171
>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
gi|379742241|ref|YP_005334210.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
gi|417814468|ref|ZP_12461121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-49A2]
gi|417818208|ref|ZP_12464836.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HCUF01]
gi|418339416|ref|ZP_12948306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-23A1]
gi|418346987|ref|ZP_12951740.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-28A1]
gi|418355750|ref|ZP_12958469.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-61A1]
gi|419827397|ref|ZP_14350896.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|421318500|ref|ZP_15769068.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1032(5)]
gi|421322202|ref|ZP_15772754.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1038(11)]
gi|421325999|ref|ZP_15776523.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1041(14)]
gi|421333613|ref|ZP_15784090.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1046(19)]
gi|421340583|ref|ZP_15791015.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-20A2]
gi|421348407|ref|ZP_15798784.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46A1]
gi|422897543|ref|ZP_16934982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-40A1]
gi|422903742|ref|ZP_16938706.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48A1]
gi|422907626|ref|ZP_16942419.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-70A1]
gi|422914466|ref|ZP_16948970.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HFU-02]
gi|422926670|ref|ZP_16959682.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-38A1]
gi|423145993|ref|ZP_17133586.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-19A1]
gi|423150669|ref|ZP_17137982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-21A1]
gi|423154503|ref|ZP_17141667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-22A1]
gi|423157571|ref|ZP_17144663.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-32A1]
gi|423161144|ref|ZP_17148082.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-33A2]
gi|423165973|ref|ZP_17152692.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48B2]
gi|423732002|ref|ZP_17705303.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|423771404|ref|ZP_17713568.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
gi|423896780|ref|ZP_17727612.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|423931983|ref|ZP_17732005.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|424003418|ref|ZP_17746492.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-17A2]
gi|424007212|ref|ZP_17750181.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-37A1]
gi|424025192|ref|ZP_17764841.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-62B1]
gi|424028078|ref|ZP_17767679.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-69A1]
gi|424587360|ref|ZP_18026938.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1030(3)]
gi|424596014|ref|ZP_18035332.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1040(13)]
gi|424602685|ref|ZP_18041824.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1047(20)]
gi|424607619|ref|ZP_18046559.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1050(23)]
gi|424611435|ref|ZP_18050273.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-39A1]
gi|424614263|ref|ZP_18053047.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-41A1]
gi|424618230|ref|ZP_18056900.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-42A1]
gi|424623016|ref|ZP_18061519.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-47A1]
gi|424645975|ref|ZP_18083709.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A2]
gi|424653742|ref|ZP_18091121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A2]
gi|440710678|ref|ZP_20891326.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
gi|443504792|ref|ZP_21071744.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-64A1]
gi|443508698|ref|ZP_21075453.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-65A1]
gi|443512536|ref|ZP_21079169.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-67A1]
gi|443516095|ref|ZP_21082600.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-68A1]
gi|443519886|ref|ZP_21086274.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-71A1]
gi|443524781|ref|ZP_21090984.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-72A2]
gi|443532365|ref|ZP_21098379.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-7A1]
gi|443536179|ref|ZP_21102046.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-80A1]
gi|443539707|ref|ZP_21105560.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A1]
gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
gi|340035804|gb|EGQ96782.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HCUF01]
gi|340036954|gb|EGQ97930.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-49A2]
gi|341619799|gb|EGS45601.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48A1]
gi|341619916|gb|EGS45703.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-70A1]
gi|341620721|gb|EGS46487.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-40A1]
gi|341636278|gb|EGS60980.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HFU-02]
gi|341645671|gb|EGS69800.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-38A1]
gi|356417346|gb|EHH70964.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-21A1]
gi|356422237|gb|EHH75720.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-19A1]
gi|356427708|gb|EHH80949.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-22A1]
gi|356428376|gb|EHH81603.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-23A1]
gi|356429515|gb|EHH82731.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-28A1]
gi|356439041|gb|EHH92041.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-32A1]
gi|356443637|gb|EHH96456.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-33A2]
gi|356449564|gb|EHI02310.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48B2]
gi|356452248|gb|EHI04927.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-61A1]
gi|378795751|gb|AFC59222.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
gi|395916758|gb|EJH27588.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1032(5)]
gi|395917837|gb|EJH28665.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1041(14)]
gi|395917942|gb|EJH28769.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1038(11)]
gi|395929015|gb|EJH39768.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1046(19)]
gi|395939866|gb|EJH50548.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-20A2]
gi|395942986|gb|EJH53662.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46A1]
gi|395957731|gb|EJH68260.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A2]
gi|395958234|gb|EJH68734.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A2]
gi|395960865|gb|EJH71220.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-42A1]
gi|395970118|gb|EJH79925.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-47A1]
gi|395972029|gb|EJH81650.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1030(3)]
gi|395974488|gb|EJH84014.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1047(20)]
gi|408006175|gb|EKG44347.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-39A1]
gi|408010757|gb|EKG48606.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-41A1]
gi|408030564|gb|EKG67219.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1040(13)]
gi|408041953|gb|EKG78036.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1050(23)]
gi|408608187|gb|EKK81590.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|408622447|gb|EKK95431.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|408632864|gb|EKL05292.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
gi|408653575|gb|EKL24737.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|408654068|gb|EKL25211.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|408844311|gb|EKL84443.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-37A1]
gi|408845067|gb|EKL85188.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-17A2]
gi|408869590|gb|EKM08886.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-62B1]
gi|408878354|gb|EKM17364.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-69A1]
gi|439974007|gb|ELP50211.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
gi|443430871|gb|ELS73429.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-64A1]
gi|443434701|gb|ELS80853.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-65A1]
gi|443438594|gb|ELS88314.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-67A1]
gi|443442631|gb|ELS95939.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-68A1]
gi|443446520|gb|ELT03184.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-71A1]
gi|443449234|gb|ELT09535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-72A2]
gi|443457755|gb|ELT25152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-7A1]
gi|443460682|gb|ELT31766.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-80A1]
gi|443464837|gb|ELT39498.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A1]
Length = 916
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
Length = 927
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
Length = 927
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
2740-80]
gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
2740-80]
Length = 727
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
sp. HGF5]
gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
sp. HGF5]
Length = 559
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 151/265 (56%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE + K++FLA MSHE+RTPM +IG++++L D +L +EQ I+ S+ A
Sbjct: 158 AKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLL-MDSELQDEQREYATIIRNSADA 216
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ ++N ILD SK+ESGKMELE FDL+ ++E+ +FS + S N+E + D IP
Sbjct: 217 LVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPS 276
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD GR+ Q+ NL++N++KFT+ G + L S A
Sbjct: 277 MVFGDMGRLRQVLVNLVSNAVKFTNEGGVY-------LVVSLAKA--------------- 314
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
E+N+L L F V DTG GI K + +F+ F Q D S TR++GGTGLG
Sbjct: 315 -------------EENRLTLEFTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLG 361
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I ++LV MGGEI+V K G
Sbjct: 362 LAICKSLVQMMGGEIEVDSKEGEGA 386
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 33/182 (18%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLR--ILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
+ + + P S + R+ G + IL+ +D P+ + + +LEK+G + DG
Sbjct: 394 VHTHEEEHPRLREEEHSGKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMNADMAEDG 453
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
QAVE M A + +D+I MD QMP MDG EA IR+ +
Sbjct: 454 RQAVE----MAAGPKA------------------YDMIFMDLQMPVMDGLEAARLIRQMK 491
Query: 1043 SEHGARNIPI-VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL-TKNMPSEA 1100
E A P+ VA+TA+ M+ +K+C GMN Y++KP+ +S + L ++ MP E
Sbjct: 492 PEADA---PVLVAMTANVMDGIQKRCFDAGMNEYISKPVK----ISCVKHLISRYMPVEP 544
Query: 1101 TG 1102
G
Sbjct: 545 DG 546
>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
Length = 927
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ PI+A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPIIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|384425392|ref|YP_005634750.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
Length = 916
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKE---YRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
Length = 778
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 155/285 (54%), Gaps = 37/285 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR AE +N KS FLANMSHE+RTPM IIG+ E+L+ D L Q I+ S+
Sbjct: 258 EARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQETD-LNAAQRDCTRVIQDSAA 316
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
AL+R++N ILD+S++E+G++ELE +FD ++ +E ++ +E ++L +P
Sbjct: 317 ALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEFAIELDPELP 376
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+RGDPGR+ QI +NL++N+IKFT G + + LD + T
Sbjct: 377 ARLRGDPGRLRQILTNLVSNAIKFTEQGRVSV-----TLDCLERT--------------- 416
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + V DTG G+ + +FE F Q D ST R++GGTGL
Sbjct: 417 ---------------DDWVRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGL 461
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
GL+I R LV MGG I V K G++ ++ L+L SSES D
Sbjct: 462 GLAISRQLVELMGGGIDVESKPGLGSVFRVELVL-ESSESPPAVD 505
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 24/143 (16%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GLR+L+AED P Q V +L + V + P+G RSLL+ S
Sbjct: 649 GLRVLVAEDNPANQRVIEWMLTALDCEVELHPNG------------------RSLLE-SF 689
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+ P DL+LMDCQMP MDGYE T +RK ES G R +PI+A+TA AM D ++ +
Sbjct: 690 TARP----ADLVLMDCQMPVMDGYETTRRLRKLESALG-RRVPIIAVTAQAMAGDRERVI 744
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ +L+KP E + + + R
Sbjct: 745 AAGMDDHLSKPFTLEALATLLTR 767
>gi|421352157|ref|ZP_15802522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-25]
gi|395952602|gb|EJH63216.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-25]
Length = 916
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
Length = 927
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
gi|419838143|ref|ZP_14361581.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46B1]
gi|421343854|ref|ZP_15794257.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43B1]
gi|423736105|ref|ZP_17709295.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|429886893|ref|ZP_19368431.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
gi|395939934|gb|EJH50615.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43B1]
gi|408629077|gb|EKL01790.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|408856691|gb|EKL96386.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46B1]
gi|429226205|gb|EKY32345.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
Length = 916
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|357634389|ref|ZP_09132267.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357582943|gb|EHJ48276.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 1101
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 156/285 (54%), Gaps = 43/285 (15%)
Query: 396 VSKEMKLRAELISHLDARRKA----EASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKS 450
V++++ L E +LDA R A + +N KSQFLA MSHE+RTPM AI+GL E+ L++
Sbjct: 564 VAEQLALGVERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRT 623
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
+LT EQ + + S+ LL +LN ILD SK+E+ +MELE +FDL + L +
Sbjct: 624 --ELTEEQRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTL 681
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ + LD+ +PR+V GDPG+V Q+ NLI N++KFT++G + +R
Sbjct: 682 GLGAREKGLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGL---- 737
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
A A+ E + L FEV DTG GI E +
Sbjct: 738 --------------------------AAGAVG--EPGR--LVFEVADTGIGIRPDMLEVI 767
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
F+SF Q D ST R++GGTGLGL+I R L MGGEI+ ++PG
Sbjct: 768 FDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAA--STPG 810
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 28/148 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
LR+L+AED P+ I++++ L+K+G T G A+ L
Sbjct: 845 LRVLVAEDNPVNIKLMSIH-LQKLGHTAVTATSGEGALARL------------------- 884
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES-EHGARN--IPIVALTAHAMNADEK 1065
+E P FDL+LMD +MP MDG A IR S E R+ IPI+A+TAH +
Sbjct: 885 AEEP----FDLVLMDIEMPSMDGLTAARRIRAGGSAERPVRDKAIPIIAVTAHVSPEVRQ 940
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLT 1093
C GM+AY+ KP++ E + TI RL
Sbjct: 941 ACAEAGMDAYVGKPVNLEELAGTIDRLA 968
>gi|423957740|ref|ZP_17735483.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|423985725|ref|ZP_17739039.1| his Kinase A domain protein [Vibrio cholerae HE-46]
gi|408656157|gb|EKL27255.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|408663568|gb|EKL34437.1| his Kinase A domain protein [Vibrio cholerae HE-46]
Length = 927
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+ILMD QMP MDG A EI++ + ++ PI+A+TAHAM + + L GM+ Y
Sbjct: 708 QFDIILMDIQMPHMDGVTACKEIKQLKD---YQDTPIIAVTAHAMAGERDRLLKAGMDDY 764
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 765 LTKPIE-EHILQQVL 778
>gi|421355136|ref|ZP_15805468.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-45]
gi|395954261|gb|EJH64874.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-45]
Length = 916
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227082574|ref|YP_002811125.1| hybrid sensory histidine kinase BarA [Vibrio cholerae M66-2]
gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|360036328|ref|YP_004938091.1| two-component system, NarL family, sensor histidine kinase BarA
[Vibrio cholerae O1 str. 2010EL-1786]
gi|418335452|ref|ZP_12944361.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-06A1]
gi|418350744|ref|ZP_12955475.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43A1]
gi|424599923|ref|ZP_18039101.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
CP1044(17)]
gi|424657564|ref|ZP_18094848.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A2]
gi|449055106|ref|ZP_21733774.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|356416487|gb|EHH70118.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-06A1]
gi|356445240|gb|EHH98049.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43A1]
gi|356647482|gb|AET27537.1| two-component system, NarL family, sensor histidine kinase BarA
[Vibrio cholerae O1 str. 2010EL-1786]
gi|408040649|gb|EKG76820.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
CP1044(17)]
gi|408051886|gb|EKG86959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A2]
gi|448265148|gb|EMB02383.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
Length = 927
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|424660948|ref|ZP_18098195.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-16]
gi|408049820|gb|EKG85009.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-16]
Length = 921
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 274 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 331
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 332 NLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 391
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 392 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 431
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 432 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 476
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 477 GLVITQKLVSHMGGEISLTSRLHQGS 502
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 696 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 752
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 753 AGMDDYLTKPIE-EHILQQVL 772
>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
gi|227118895|ref|YP_002820791.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|422923746|ref|ZP_16956890.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
BJG-01]
gi|424010437|ref|ZP_17753370.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-44C1]
gi|424592152|ref|ZP_18031576.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1037(10)]
gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|341643549|gb|EGS67831.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
BJG-01]
gi|408029783|gb|EKG66485.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1037(10)]
gi|408863066|gb|EKM02562.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-44C1]
Length = 927
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|421614060|ref|ZP_16055129.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
gi|408495267|gb|EKJ99856.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
Length = 843
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 31/317 (9%)
Query: 390 LILTNGVSKEMK--LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+I T G+S+++ R+E H +A R A+A+N KS+FLANMSHE+RTPM A+IG+ ++
Sbjct: 240 IIGTFGISRDITDLKRSEAALH-EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADL 298
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L +Q V I++SS LLRL+N ILD SK+E+ ++ELE+ F L K +E +
Sbjct: 299 L-SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTL 357
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGW 565
FS + S +E D+S +P + GDPGRV Q+ +NLI N+IKFT G + +
Sbjct: 358 RSFSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVL 417
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
++ A P+ R+ R D+ + L V D+G GI +
Sbjct: 418 RREELADRDLAATPSGRESPER------------------DDMVELRLSVCDSGIGIPPA 459
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
+ + V F Q D STTR+ GGTGLGLSI R LV MGGE+++ + GT L +
Sbjct: 460 QQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELQLQSEVGVGTTFSFQLKM- 518
Query: 686 ASSESKQIYDADFPNTV 702
+ A PN V
Sbjct: 519 ------PVCPASMPNEV 529
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 933 PCSSSNSSSNQKRILEG--------LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
P S N +++ L G L +L+AED Q V +L +G S+ DG
Sbjct: 522 PASMPNEVDDEEEDLGGPARQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDG-- 579
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
R L SE+ +D++LMD MP MDG EAT IR+ E
Sbjct: 580 ----------------RETLTKWRSES-----YDVVLMDMHMPVMDGLEATRAIRQEEW- 617
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
R+ PIVALTA AM+ D C GM++YLTKPI S ++ + + +P G+
Sbjct: 618 GTERHTPIVALTAAAMSEDAAACREAGMDSYLTKPIHSRKLRDALTPYQRELPPADDGS 676
>gi|421329657|ref|ZP_15780167.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1042(15)]
gi|395928191|gb|EJH38954.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1042(15)]
Length = 921
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 274 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 331
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 332 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 391
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 392 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 431
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 432 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 476
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 477 GLVITQKLVSHMGGEISLTSRLHQGS 502
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 696 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 752
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 753 AGMDDYLTKPIE-EHILQQVL 772
>gi|419830886|ref|ZP_14354371.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|419834571|ref|ZP_14358025.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|422308386|ref|ZP_16395536.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|422918285|ref|ZP_16952599.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02A1]
gi|423823183|ref|ZP_17717191.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|423857145|ref|ZP_17720994.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
gi|423884420|ref|ZP_17724587.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|423998707|ref|ZP_17741957.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02C1]
gi|424017608|ref|ZP_17757434.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55B2]
gi|424020525|ref|ZP_17760306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-59B1]
gi|424625906|ref|ZP_18064365.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-50A1]
gi|424630390|ref|ZP_18068672.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-51A1]
gi|424634437|ref|ZP_18072535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-52A1]
gi|424637516|ref|ZP_18075522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55A1]
gi|424641420|ref|ZP_18079300.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A1]
gi|424649492|ref|ZP_18087152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A1]
gi|443528411|ref|ZP_21094447.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-78A1]
gi|341635330|gb|EGS60048.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02A1]
gi|408011083|gb|EKG48919.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-50A1]
gi|408017207|gb|EKG54725.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-52A1]
gi|408022026|gb|EKG59255.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A1]
gi|408022461|gb|EKG59670.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55A1]
gi|408031262|gb|EKG67898.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A1]
gi|408053462|gb|EKG88476.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-51A1]
gi|408617656|gb|EKK90769.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|408620659|gb|EKK93671.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|408634291|gb|EKL06554.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|408639749|gb|EKL11556.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
gi|408640070|gb|EKL11871.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|408648704|gb|EKL20039.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|408852149|gb|EKL91993.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02C1]
gi|408858708|gb|EKL98380.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55B2]
gi|408866723|gb|EKM06100.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-59B1]
gi|443453230|gb|ELT17061.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-78A1]
Length = 916
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|417825671|ref|ZP_12472259.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE48]
gi|340047156|gb|EGR08086.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE48]
Length = 927
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|422911277|ref|ZP_16945903.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-09]
gi|341631796|gb|EGS56673.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-09]
Length = 916
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 691 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 747
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 748 AGMDDYLTKPIE-EHILQQVL 767
>gi|417821767|ref|ZP_12468381.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE39]
gi|340039398|gb|EGR00373.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE39]
Length = 916
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+ILMD QMP MDG A EI++ + ++ PI+A+TAHAM + + L GM+ Y
Sbjct: 697 QFDIILMDIQMPHMDGVTACKEIKQLKD---YQDTPIIAVTAHAMAGERDRLLKAGMDDY 753
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 754 LTKPIE-EHILQQVL 767
>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
vinelandii DJ]
gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
vinelandii DJ]
Length = 914
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 166/288 (57%), Gaps = 39/288 (13%)
Query: 389 ILILTNGVSKEMK-LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+LIL G++ + LR E + A +A N KS+FLA MSHE+RTP+ ++G+L++
Sbjct: 371 LLILAVGLADRFQQLRREGLYSHRAAEEALLQNQAKSRFLAKMSHEIRTPLNGVLGMLQL 430
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
LK + +L + Q V I S L+ ++N ILD +++ESGK+ LE+ EFDL++ L + +
Sbjct: 431 LK-ETRLDHSQRFYVDTIASSGSTLMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTL 489
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
++F+ Q + + L + +PR+++GDP R+ Q+ +NL++N++KFTS G +
Sbjct: 490 NLFTAQAMEKRLRLHMSLDEGVPRHIQGDPTRLKQVLTNLLSNALKFTSEGQV------- 542
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
LD S+ R+K D L F V D+G GI Q
Sbjct: 543 RLDVSR--------RRK--------------------SDGSEHLYFGVSDSGIGIRQEAQ 574
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+FESF QGD STTR++GG+GLGL+I + LV MGG I+V +++PG
Sbjct: 575 ARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEV--QSTPG 620
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 21/140 (15%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED P+ Q+V ++L+K G V + +G +AV AE R S +Q
Sbjct: 786 ILIAEDNPVNQLVVQELLKKRGYNVRLAGNGAEAV--------AEYHRAPSSIQ------ 831
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+ILMDC+MP+MDG+EAT++IR E +PI+ALTAH ++ + L VG
Sbjct: 832 -------MILMDCEMPEMDGFEATLQIRLLERLRKWPAVPIIALTAHTLDEHREYGLEVG 884
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
MN +L KP+D + + +T+ R
Sbjct: 885 MNDFLGKPVDKQLLHATVER 904
>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
Length = 927
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|297813131|ref|XP_002874449.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297320286|gb|EFH50708.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1113
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 259/548 (47%), Gaps = 63/548 (11%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPV 224
WY + +D +TG G A+ DL + I A S + L +L
Sbjct: 154 WYTQTVDQLTGRLNGNATKSKALDLTHTYWI----------QAAQSNNYTTAFLGTSLGG 203
Query: 225 WDPTTSNKSIVAVVGVTTALSSVGQLMKELVEV------HSGHIYLTSQEGYLLAT--ST 276
D T +S+V++ L S+G +K L +V H +Y+ +++G +L S
Sbjct: 204 EDSETLIQSVVSLYS-KKGLVSLGFPVKTLTDVLNRLNLHGEELYMWTKDGTVLVREGSL 262
Query: 277 NAPLLTNSSTGPNLVKAVDSDNPVIQMGAQ----WLQSEYGSKVPPGHVIHVQNAKLGHK 332
NA + N I G + W Q + G+ + ++ +
Sbjct: 263 NASFFIS--------------NGSICFGRESKSVWSQCIPDNCSSSGYEVEIKRSTF--- 305
Query: 333 QYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIG--CICIL 390
Q + L + +P+ ++ P + + +A K + LI ++ L +G +
Sbjct: 306 QAFCSV--LEVSGVPLRYTLMFPNKGGATRIRHQAEKAMYQLIVVTI-FLGLGWPLWFVW 362
Query: 391 ILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
+ KEM +RA LI+ ++A ++AE + KSQ AN SH++R +A I GL++I
Sbjct: 363 FMMQATRKEMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGIKGLIDICCD 422
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
+ + + +T+ Q+ S L+ LLN +LD+SK+ESGKM+L +F+L K LE+++D +
Sbjct: 423 EVKPGSNVDTTLKQVNVCSKDLVVLLNSVLDMSKIESGKMQLVEEDFNLAKLLEDVIDFY 482
Query: 511 SVQCSNHNVETVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
V+ V D D NVRGD ++ QI +NL++NS+KFT+ GHI IR W +
Sbjct: 483 HPVAMKKGVDVVFDPHDGSIFKFTNVRGDSCKLKQILNNLVSNSVKFTTDGHISIRAWAQ 542
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED---------NKLALCFEVDDT 618
SK++ +D + + ++ + + + + + N + FE DDT
Sbjct: 543 R-PGSKSSVVLASDIQGVSKILKSMFCKNKDQSSTYEIEISNSIRNNANTMEFVFEADDT 601
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGT 676
G GI ++VFE++ Q + H GTGLGL IV++LV MGGEI++ K GT
Sbjct: 602 GKGIPIEMRKSVFENYIQVRGT---GHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGT 658
Query: 677 LMQLYLLL 684
+ +LL
Sbjct: 659 CFEFNVLL 666
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ +D L + VA L+K+G VS V EAL + + RR QGS
Sbjct: 974 RVLVVDDNFLTRKVAIGKLKKMG--VSEVKQCDNGKEALRLVTEGLTQRREE--QGSVDN 1029
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE-KKCLG 1069
P FD I MDCQMP MDGYEAT EIRK E +G +IP++A++ H + E ++ +
Sbjct: 1030 LP----FDYIFMDCQMPDMDGYEATREIRKVEKSYGV-HIPVIAVSGHDPGSREARETIQ 1084
Query: 1070 VGMNAYLTKPID 1081
GM+A+L K ++
Sbjct: 1085 AGMDAFLDKNLN 1096
>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
Length = 927
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|428319138|ref|YP_007117020.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242818|gb|AFZ08604.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1831
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 165/281 (58%), Gaps = 14/281 (4%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
+++ + E + H AR+ AE +N KS+FLA MSHE+RTPM A+IG+ +L D +LT E
Sbjct: 1019 RQLAEQNEALEH--ARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPE 1075
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q V I+ S ALL ++N ILD SK+ESGK++LE + F+LQ +EE +++ + + S
Sbjct: 1076 QRDFVETIRTSGDALLTIINDILDFSKIESGKLDLERSPFELQNCIEESLELLAPRASEK 1135
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+E + D++P+N+ GD R+ QI NL+ N++KFT SG I++ C + A
Sbjct: 1136 GLELAYFIDDSVPKNILGDVTRLRQILVNLLGNAVKFTESGEIVV--CCTARKIEQIAAN 1193
Query: 578 FPTDRKKFGRAFRTKLKQQA--NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
++ L+ Q N + + F V DTG GI + + +F++F
Sbjct: 1194 SSPEKINI-------LEPQPLLINQGELARRRQYEIQFAVQDTGIGIPPDRMDRLFKAFS 1246
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D STTR +GGTGLGL+I + L + MGG + VV + SPG+
Sbjct: 1247 QVDASTTRHYGGTGLGLAISQRLSDMMGGTMWVVSQVSPGS 1287
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 27/151 (17%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
++NS+ +RILLAED + Q VA +L+++G + +GL+ +EAL R
Sbjct: 1530 AANSAGQDATNSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANGLEVLEALKRQ--- 1586
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
+D++LMD QMP MDG EAT R+ E A P I+A
Sbjct: 1587 --------------------SYDVVLMDVQMPNMDGLEAT---RRICQEWPANKKPRIIA 1623
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
+TA+AM D +KCL GM+ Y+TKP+ E +
Sbjct: 1624 MTANAMQGDREKCLAAGMDDYITKPVRREEL 1654
>gi|421337156|ref|ZP_15787617.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1048(21)]
gi|395932255|gb|EJH42999.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1048(21)]
Length = 912
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 265 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 322
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 323 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 382
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 383 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 422
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 423 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 467
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 468 GLVITQKLVSHMGGEISLTSRLHQGS 493
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 687 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 743
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 744 AGMDDYLTKPIE-EHILQQVL 763
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 38/329 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I+IS++V I+V+ I+ T +E + + L R AEA++ KSQFLA +SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGR--AEAADVAKSQFLATVSH 345
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D +L Q V ++S +L+ L+N +LDL+K+ESGK+EL
Sbjct: 346 EIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIEL 404
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FD++ L+ +V +FS + +E + +SD +P + GDP R QI +NL+ NS+
Sbjct: 405 EAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSM 464
Query: 553 KFTSSGHIIIRGWC----------------ENLDT---SKNTAEFPT-------DRKKFG 586
KFT GHI IR EN++ SKNT + T + +K
Sbjct: 465 KFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTL 524
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+FR + + +++A+ + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 525 ESFR--MFKDSSDAI-----DSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYG 577
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTG+GLSI + LV MGGEI V K PG
Sbjct: 578 GTGIGLSITKRLVELMGGEIGFVSK--PG 604
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G IL+ +D + +IVA L+K GA V+ V G +A+ L
Sbjct: 789 RSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRL-------------- 834
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
+ P +FD MD QMP+MDG+EAT +R ES+
Sbjct: 835 ------QPPH--KFDACFMDVQMPEMDGFEATRLVRSVESK 867
>gi|449143784|ref|ZP_21774607.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
gi|449080782|gb|EMB51693.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
Length = 927
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 166/309 (53%), Gaps = 39/309 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS-ESKQIYDADFPNTVVVLATVG 709
GL I + LV+ MGGEI + + G+ L L + YDA N +L
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPMNDGYDASLLNHRHLLLIEP 542
Query: 710 SMERMIISQ 718
+M+ I Q
Sbjct: 543 NMQAAAIVQ 551
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A EI++ + G + P++A+TAHAM + + L GM+ YL
Sbjct: 709 FDIILMDIQMPHMDGVTACKEIKQLK---GYSDTPVIAVTAHAMAGERDRLLKAGMDDYL 765
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 766 TKPIE-EHILQQVL 778
>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1267
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 183/330 (55%), Gaps = 37/330 (11%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
GV+ ++ +R +L L +A+ +AE S KS+FLANMSHE+RTPM IIG +L Q
Sbjct: 482 GVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQT-Q 540
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L ++Q + + +I+ S LL ++N ILD SK+E+GKM +E+ +F+L++ + +L + Q
Sbjct: 541 LNSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQ 600
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
S +E + ++ +P +++GDP R+ Q+ NL NN+IKF+ G+I +R E +D S
Sbjct: 601 ASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLR--VEKIDQSD 658
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ ++ ++ + F V+D G G+ + + + +F S
Sbjct: 659 SDSD------------------------------QVIISFSVEDNGIGLTEEQMQRLFNS 688
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL---LLGASSES 690
F Q D STTRK+GGTGLGL+I + LV MGGEI V + G+ L +L + ++
Sbjct: 689 FSQADSSTTRKYGGTGLGLAISKYLVELMGGEISVSSEYGVGSTFSFSLPFGILASGIQT 748
Query: 691 KQIYDADFPNTVVVLATVGSMERMIISQWL 720
Q + D + V++ + I++ +L
Sbjct: 749 NQRDNIDLKGSRVLIVDDNEASQEILASYL 778
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 29/159 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG ILL ED + Q+VA +ILE VG +V V +G +AVE +
Sbjct: 901 LEGNHILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVR---------------- 944
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+DL+LMD QMP MDG EAT +R E R++PI+ALTAHA++ ++
Sbjct: 945 -------AGNYDLVLMDLQMPVMDGMEATRILR---DEPLYRDLPIIALTAHAISGFREQ 994
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
C+G+GMN +++KP E M +L L+K + S + R
Sbjct: 995 CIGLGMNDFISKPFLPEDM---LLILSKCLTSRTKESDR 1030
Score = 43.1 bits (100), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G R+L+ +D Q + L + V+V+ G +A++ L
Sbjct: 756 LKGSRVLIVDDNEASQEILASYLVDLNFDVTVLSSGQEAIDLL----------------- 798
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ FD++++D +MP +DG E IR + + IPI+ + A A + DE +
Sbjct: 799 ----VKEGEAFDILVIDWKMPGLDGVET---IRLIKEKMKLEKIPII-IMASAYDLDELR 850
Query: 1067 CL--GVGMNAYLTKPIDSERMVSTI 1089
+ +G+ A+L KP +++ I
Sbjct: 851 NVFSELGIKAFLNKPHTPSQLMDAI 875
>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1625
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 149/258 (57%), Gaps = 36/258 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR KA+ + KS+FLANMSHE+RTPM +IG+ ++L D +L EQ S I+ S
Sbjct: 912 EARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLL-MDTELRPEQRSLAESIQSSGE 970
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL L+N ILD SK+E+G++ELE+ +F+L+ LE+L + +V+ +E + ++P
Sbjct: 971 ALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELICLPDPDVP 1030
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GDPGR+ QI +NL+ N+IKFT G +++R + S+ +A
Sbjct: 1031 AQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVR-----VQRSEVSA-------------- 1071
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ + L F V DTG GI + K + +F F Q D STTRK GGTGL
Sbjct: 1072 ----------------DDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGL 1115
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I R L MGGE+ V
Sbjct: 1116 GLAISRQLAEMMGGEVGV 1133
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 67/182 (36%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+AED P+ Q VA +L K+G + +V GL+AVEAL
Sbjct: 1325 VLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQNQ------------------- 1365
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN---------------------- 1049
+DL+LMD QMP+MDG EAT EIR+ E HG
Sbjct: 1366 ----SYDLVLMDVQMPEMDGLEATQEIRRME--HGTEEREQRTGDRRWESQPLNPSTPEY 1419
Query: 1050 --------------------IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
IPI+A+TA AMN D +C GM+ Y++KP+ + ++ +
Sbjct: 1420 HNPSIPKSFNPKIPQSLNPKIPIIAMTAGAMNQDRDRCFEAGMDDYVSKPVSHQELLKVL 1479
Query: 1090 LR 1091
R
Sbjct: 1480 NR 1481
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G IL+ +D + K LE G V G +A+ L+R+ + +S
Sbjct: 1166 LHGEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDRVYSEGNS-------- 1217
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPIVALTAHAMNADEK 1065
F + ++D MP MDG E I+KS G N +P+V LT+ D K
Sbjct: 1218 ----------FAMAILDMHMPAMDGGELGQRIKKS----GKFNDLPLVMLTSLGRPGDAK 1263
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTIL 1090
G NAYL KP+ + T+L
Sbjct: 1264 IFEEQGFNAYLNKPVRQSELFDTLL 1288
>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
Length = 916
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A EI++ + G + P++A+TAHAM + + L GM+ YL
Sbjct: 698 FDIILMDIQMPHMDGVTACKEIKQLK---GYSDTPVIAVTAHAMAGERDRLLKAGMDDYL 754
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 755 TKPIE-EHILQQVL 767
>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1346
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 149/258 (57%), Gaps = 29/258 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DA +AE + KS+FLANMSHE+RTPM +IG+ ++L D +L EQ S I+ S
Sbjct: 618 DAMEQAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLLL-DTELRPEQRSLAESIQSSGE 676
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL L+N ILD SK+E+G++ELE+ F+L LE+L + +V+ +E + ++P
Sbjct: 677 ALLALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVP 736
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GDPGR+ QI +NL+ N+IKFT G +++ K+ A
Sbjct: 737 AQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVM-------VQKSEAR------------- 776
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
Q+++N+ + + L F V DTG G+ + K + +F F Q D STTRK GGTGL
Sbjct: 777 ---SQKSDNSA-----DDVLLLFTVQDTGIGVPEDKIDLLFNKFSQVDASTTRKFGGTGL 828
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I R L MGGE+ V
Sbjct: 829 GLAISRQLAEMMGGEVGV 846
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 73/193 (37%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+AED P+ Q VA +L K+G + +V GL+AVEAL
Sbjct: 1038 VLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQNQ------------------- 1078
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH-----------------GAR------ 1048
+DL+LMD QMP+MDG EAT IR +E + G R
Sbjct: 1079 ----SYDLVLMDVQMPEMDGLEATRRIRAAEDRNQRSEVRNQISEERNQSTGDRRWESQP 1134
Query: 1049 ---------------------------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
IPI+A+TA AM+ D ++CL GM+ Y+TKP++
Sbjct: 1135 LNPSTPEYHNPSIPKSFNPKIPQSLNPKIPIIAMTAGAMHQDRERCLDAGMDDYVTKPVN 1194
Query: 1082 SERMVSTILRLTK 1094
++ + + R K
Sbjct: 1195 PGQLATVLSRWLK 1207
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G IL+ +D + K LE G V +G +A+ L+R+ + +G
Sbjct: 879 LHGEHILIVDDNETNLEILKKQLEAWGVEVEQASEGHEALLILDRVYS----------EG 928
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ F + ++D MP MDG E IR ++ +++P+V LT+ D K
Sbjct: 929 N--------YFAMAILDMHMPGMDGAELGRLIRNTDI---LKDLPLVMLTSLGRPGDAKI 977
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
G NAYL KP+ + T+L
Sbjct: 978 FEEQGFNAYLNKPVRQSELFDTLL 1001
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 38/329 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I+IS++V I+V+ I+ T +E + + L R AEA++ KSQFLA +SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGR--AEAADVAKSQFLATVSH 345
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D +L Q V ++S +L+ L+N +LDL+K+ESGK+EL
Sbjct: 346 EIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIEL 404
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FD++ L+ +V +FS + +E + +SD +P + GDP R QI +NL+ NS+
Sbjct: 405 EAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSM 464
Query: 553 KFTSSGHIIIRGWC----------------ENLDT---SKNTAEFPT-------DRKKFG 586
KFT GHI IR EN++ SKNT + T + +K
Sbjct: 465 KFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTL 524
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+FR + + +++A+ + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 525 ESFR--MFKDSSDAI-----DSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYG 577
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTG+GLSI + LV MGGEI V K PG
Sbjct: 578 GTGIGLSITKRLVELMGGEIGFVSK--PG 604
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 39/171 (22%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
S ++S + +L G IL+ +D + +IVA L+K GA V+ V G +A+ L
Sbjct: 781 SRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRL------ 834
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE----------- 1044
+ P +FD MD QMP+MDG+EAT +R ES+
Sbjct: 835 --------------QPPH--KFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVS 878
Query: 1045 ---HGAR---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+G + ++PI+A+TA + A + C+ GM+ Y+ KP + +++ S +
Sbjct: 879 SEIYGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAV 929
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 38/329 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I+IS++V I+V+ I+ T +E + + L R AEA++ KSQFLA +SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGR--AEAADVAKSQFLATVSH 345
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D +L Q V ++S +L+ L+N +LDL+K+ESGK+EL
Sbjct: 346 EIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIEL 404
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FD++ L+ +V +FS + +E + +SD +P + GDP R QI +NL+ NS+
Sbjct: 405 EAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSM 464
Query: 553 KFTSSGHIIIRGWC----------------ENLDT---SKNTAEFPT-------DRKKFG 586
KFT GHI IR EN++ SKNT + T + +K
Sbjct: 465 KFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTL 524
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+FR + + +++A+ + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 525 ESFR--MFKDSSDAI-----DSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYG 577
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTG+GLSI + LV MGGEI V K PG
Sbjct: 578 GTGIGLSITKRLVELMGGEIGFVSK--PG 604
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 39/171 (22%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
S ++S + +L G IL+ +D + +IVA L+K GA V+ V G +A+ L
Sbjct: 781 SRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRL------ 834
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE----------- 1044
+ P +FD MD QMP+MDG+EAT +R ES+
Sbjct: 835 --------------QPPH--KFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVS 878
Query: 1045 ---HGAR---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+G + ++PI+A+TA + A + C+ GM+ Y+ KP + +++ S +
Sbjct: 879 SEIYGNKAHWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAV 929
>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator, partial [Vibrio
cholerae 623-39]
gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
Length = 714
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 67 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 124
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 125 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 184
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 185 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 224
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 225 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 269
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 270 GLVITQKLVSHMGGEISLTSRLHQGS 295
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 489 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 545
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 546 AGMDDYLTKPIE-EHILQQVL 565
>gi|424807657|ref|ZP_18233065.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
gi|342325599|gb|EGU21379.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
Length = 916
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 269 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 326
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 327 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 386
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 387 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 471
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 472 GLVITQKLVSHMGGEISLTSRLHQGS 497
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A EI++ + G + P++A+TAHAM + + L GM+ YL
Sbjct: 698 FDIILMDIQMPHMDGVTACKEIKQLK---GYSDTPVIAVTAHAMAGERDRLLKAGMDDYL 754
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 755 TKPIE-EHILQQVL 767
>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
Length = 927
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A EI++ + G + P++A+TAHAM + + L GM+ YL
Sbjct: 709 FDIILMDIQMPHMDGVTACKEIKQLK---GYSDTPVIAVTAHAMAGERDRLLKAGMDDYL 765
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 766 TKPIE-EHILQQVL 778
>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
Length = 927
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 166/309 (53%), Gaps = 39/309 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS-ESKQIYDADFPNTVVVLATVG 709
GL I + LV+ MGGEI + + G+ L L + YDA N +L
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPMNDGYDASLLNHRHLLLIEP 542
Query: 710 SMERMIISQ 718
+M+ I Q
Sbjct: 543 NMQAAAIVQ 551
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A EI++ + G + P++A+TAHAM + + L GM+ YL
Sbjct: 709 FDIILMDIQMPHMDGVTACKEIKQLK---GYNDTPVIAVTAHAMAGERDRLLKAGMDDYL 765
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 766 TKPIE-EHILQQVL 778
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 174/316 (55%), Gaps = 19/316 (6%)
Query: 378 SVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTP 437
S+ ILVI + I VS+ K+ ++ + +++AEA++ KSQFLA +SHE+RTP
Sbjct: 396 SIGILVITLLVGHICHATVSRIAKVESDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTP 455
Query: 438 MAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496
M ++G++ +L D +T ++Y Q S AL+ ++N +LD +K+ESGK+ELE
Sbjct: 456 MNGVLGMMNMLMDTDLDVTQQEYVRTAQ--GSGKALVSIINEVLDQAKIESGKIELEAVL 513
Query: 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS 556
FD++ +++++ +FS + VE + +SD +P+ + GDPGR QI +NL+ NSIKFT
Sbjct: 514 FDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTD 573
Query: 557 SGHIIIRGW----------CENLDTSKNTAE----FPT-DRKKFGRAFRTKLKQQANNAM 601
GHI + E TSK+ FP D ++ FR + +
Sbjct: 574 KGHIFVTIHLVEEVFHSIEVERESTSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSF 633
Query: 602 NFREDNKL-ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
+ N L +L V+DTG GI +F F Q PS +RKHGGTG+GLSI + LV
Sbjct: 634 SSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVG 693
Query: 661 KMGGEIKVVKKNSPGT 676
M GEI V + G+
Sbjct: 694 LMNGEIGFVSEPKIGS 709
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 26/165 (15%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G + P + + + K +L G +IL+ +D + + VA L+K GA V V G++
Sbjct: 874 MGVGNKGNPRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIE 933
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ L P + FD MD QMP+MDG+EAT IR+ E+
Sbjct: 934 AITMLR----------------PPHQ------FDACFMDIQMPEMDGFEATRRIREIENN 971
Query: 1045 HGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
R ++PI+A+TA M A ++C GM+ Y++KP ++E++
Sbjct: 972 VKDRELFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQL 1016
>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1970
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 162/275 (58%), Gaps = 26/275 (9%)
Query: 404 AELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVC 463
+E+ + AR +A + KSQFLANMSHE+RTPM ++G+ E+L QLT +Q V
Sbjct: 1278 SEINELVKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELLLRT-QLTEQQQDFVK 1336
Query: 464 QIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVL 523
+K S LL L++ ILD SK+E+G+M L++ EFDL + LE+ VD+F++ ++ +E
Sbjct: 1337 TLKISGENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAASKEIELAF 1396
Query: 524 DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRK 583
++ ++PR ++GD R+ QI +NL+ N+IKFT G ++I ++ + +T E
Sbjct: 1397 LVALDVPRYLKGDASRLRQILTNLLGNAIKFTERGEVVI-----TVNRADSTPE------ 1445
Query: 584 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 643
L+ A +L+L F V D+G GI S + +F+SF Q D STTR
Sbjct: 1446 -------QSLEAPDGAA-------RLSLTFSVRDSGIGIGPSDCKKLFQSFSQVDTSTTR 1491
Query: 644 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
K+GGTGLGL+I + L MGGEI V + G++
Sbjct: 1492 KYGGTGLGLAICKQLTQLMGGEIGVESQLGVGSIF 1526
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 25/157 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
++ L ILL EDT + Q V LE +G +G EAL++M E
Sbjct: 1714 IKALNILLVEDTRINQKVVLNQLESLGFEADCANNG---QEALDKMQVKE---------- 1760
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++L+ MDCQMP +DGY+AT IR E + R++ ++ LTA+AM D +K
Sbjct: 1761 ----------YNLVFMDCQMPVLDGYDATRAIRHREGDR--RHMVVIGLTAYAMEGDRQK 1808
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
CL GM+ YLTKP+ + + I + T P+ A +
Sbjct: 1809 CLAAGMDDYLTKPVSVKDLQRAIRQWTHPSPTHAIAS 1845
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 37/166 (22%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP S + S IL G ++L+ +D+P+ + V + G VS DGL+A++ L
Sbjct: 1546 QPSSLDAAGS----ILRGKKLLIVDDSPINRQVVRQQASHWGMEVSEAEDGLEAIKLL-- 1599
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
R+++ G+P F L L+D QMPKMDG E ++ ++ P
Sbjct: 1600 --------RKAVSTGNP--------FTLALLDMQMPKMDG-EILGQLILTD--------P 1634
Query: 1052 IVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
++A T+ M + +K L +G +AYL KPI R++ ++R
Sbjct: 1635 LLATTSLIMMTSINESYQARKFLDLGFSAYLIKPIKEARLLECLIR 1680
>gi|375149632|ref|YP_005012073.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361063678|gb|AEW02670.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1329
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 165/298 (55%), Gaps = 31/298 (10%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+ A+ AE++N KS+F+ANMSHELRTPM IIG +++ + + L + Q + +KKS+
Sbjct: 801 VQAKDMAESANQAKSEFMANMSHELRTPMNGIIGFTDLVLTTN-LQHSQRDYLENVKKSA 859
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
Y LL ++N ILD SK+E+GK++++NT F + + +EE +D+ SV+ +E V + +
Sbjct: 860 YGLLDIINDILDFSKLEAGKLQIDNTSFRIDELVEEAIDILSVKAFEKRLEMVCHIDPLL 919
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P V GDP R+ Q+F NL+ N+IKFT G I + +L + N + D KKF
Sbjct: 920 PSRVSGDPVRIRQVFVNLLGNAIKFTQKGEIFV-----SLKKAGNM--YVKDGKKF---- 968
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ + V DTG GI + K +F+SF Q D STTRK+GGTG
Sbjct: 969 -------------------IDIDLSVRDTGIGIPKEKLVKIFDSFTQADSSTTRKYGGTG 1009
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLAT 707
LGL+I ++L M G ++V + + G+ L L L + QI A P VL
Sbjct: 1010 LGLTISKSLAELMDGSLQVESETNRGSTFTLKLPLEIVNIEPQITGAYRPPLTKVLVV 1067
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
++I + I++ ED P+ ++ ++L K+G V +G QA+E L
Sbjct: 1202 EKITDAATIMVVEDEPINMLLITEVLGKMGFAVIKATNGKQALELLQ------------- 1248
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
Q P LI MD MP+MDG+ T IR+ + IP++ALTA AM D
Sbjct: 1249 -QQDPQ---------LIFMDVNMPEMDGFSTTRLIRQLPQPYSL--IPVIALTADAMQGD 1296
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTI 1089
++KC+ GMN Y++KP E + S +
Sbjct: 1297 KEKCIEAGMNDYISKPFKLEEIESVL 1322
>gi|436841513|ref|YP_007325891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170419|emb|CCO23790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 1005
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 158/275 (57%), Gaps = 36/275 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DA +AE ++ KS+FLA MSHE+RTPM +I+G+ ++L S+ LT+EQ S V + S
Sbjct: 487 DAMARAEVASRTKSEFLAQMSHEIRTPMNSILGMADML-SETSLTSEQESYVTIFRDSGK 545
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
AL+ L+N ILDLSK+ESGK+ LENT FD+ K ++E + SV + ++ + P
Sbjct: 546 ALMSLINDILDLSKIESGKLALENTRFDIDKLVDEAAGIMSVSAWKKGLYFACHVAPSTP 605
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GDP R+ QI NL++N+IKFT+SG + +L+ S
Sbjct: 606 SLFMGDPTRIKQIIVNLLSNAIKFTASGTV-------HLEISS----------------- 641
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+F E +++ + V DTG GI++ K + +F++F Q D STTRK+GGTGL
Sbjct: 642 -----------SFIEGDRVLINLTVRDTGIGINEDKVKVIFDNFVQADSSTTRKYGGTGL 690
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
GLSI R LV MGG I V +S G + +++G
Sbjct: 691 GLSITRNLVELMGGNISVRNLDSGGAEFRAEIVVG 725
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 901 SICPGESSSRREDLIHTMFRERHQI------GSSRRD-----QPCSSSNSSSNQKRILEG 949
S PG+SS+R E I+ +F + + G+ +R Q + S + L
Sbjct: 826 STSPGDSSNRPE--INKLFGVKGSVRWPVTRGALQRAMIDIYQKDIAEVPSDKDEPELPP 883
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED+ +++ L+ ++ G++AV+ R
Sbjct: 884 LRILVAEDSGNNRMLLDFYLKDTPFRLTYASTGVEAVDFYKRH----------------- 926
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FDL+LMD MP+ +GYEAT EIR E+ G PIVALTA D++ C+
Sbjct: 927 ------NFDLVLMDMLMPEKNGYEATREIRMYENSKGYPETPIVALTATIYAEDKENCID 980
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
G Y+ KPI ++ TIL+
Sbjct: 981 AGCTDYMPKPIKKITLIKTILK 1002
>gi|408418332|ref|YP_006759746.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
gi|405105545|emb|CCK79042.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
Length = 1144
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 157/277 (56%), Gaps = 39/277 (14%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
L + ++ K++AE AR AE ++ KS+FLANMSHE+RTPM AIIGL + +
Sbjct: 368 LVDTTGQKEKIKAE-----KARIAAEEASRSKSEFLANMSHEIRTPMNAIIGLAHLAQKT 422
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D +T +Q + +I+ S +LL ++N ILD SK+E+ K+ +E+ EFDLQ L+ +V++ +
Sbjct: 423 D-MTPKQNDYLNKIEASGLSLLGIINDILDFSKIEANKLSIESIEFDLQAVLDNVVNLIN 481
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
++ +E + D+S ++P + GDP R+ QI NL NSIKFT +G I+I+ N D
Sbjct: 482 IKAEEKGLELLFDVSRDVPLGLVGDPLRLGQILINLAGNSIKFTLNGQILIKVALLNEDP 541
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
K A L F V D+G G+ Q + +F
Sbjct: 542 EKARAR---------------------------------LQFSVSDSGIGMTQDQISKLF 568
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+SF Q D STTR++GGTGLGL+I + LV MGGEI V
Sbjct: 569 QSFSQADGSTTRQYGGTGLGLTISKQLVGMMGGEISV 605
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G RILL ED + Q VA ++LE G V+V DGL+A+ L
Sbjct: 789 GARILLVEDNKINQQVATELLESAGLIVTVAGDGLEALAVLK------------------ 830
Query: 1009 SETPDTPR-FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
DT FD ILMD QMP MDG+E T IRK+ + +PI+A+TA+AM D +KC
Sbjct: 831 ----DTDSVFDGILMDIQMPNMDGFETTRMIRKNPA---LSELPIIAMTANAMAGDREKC 883
Query: 1068 LGVGMNAYLTKPIDSERMVSTILR 1091
L GMN ++ KPI+ + + T+++
Sbjct: 884 LDAGMNDHIPKPIEPDILFKTLIK 907
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G+R+L+ +D + + ++++ VS VP G A+ S L+
Sbjct: 638 LHGMRVLIVDDNEKSREILRDLMKEFHFNVSEVPSGEAAI---------------SELKT 682
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
S + P +DL+LMD QM MDG E R+ + + G IP I+ +TA
Sbjct: 683 SSKKAP----YDLVLMDWQMNGMDGIETA---RRIKEDSGIAKIPAILMVTAFGREEVMS 735
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRL--TKNMPSE 1099
+ VG++ +L KPI+ + I+ L N+P +
Sbjct: 736 QAQTVGLDGFLIKPINRSLLFDAIMDLFGRSNLPDQ 771
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 178/342 (52%), Gaps = 34/342 (9%)
Query: 383 VIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
VIG + IL + +K+ + + + +AEA++ KSQFLA +SHE+RTPM I+
Sbjct: 350 VIGLLVGYILYGAANHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL 409
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G+L +L D L++ Q + AL+ L+N +LD +K+E+GK+ELE FDL+
Sbjct: 410 GMLALLL-DTDLSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSI 468
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+KFT GHI +
Sbjct: 469 LDDVLSLFSEKSRHKGIELAVFVSDKVPEIVLGDPGRFRQIITNLVGNSVKFTERGHIFV 528
Query: 563 R---------------GWCENLDTS----KNTAEFPT-------DRKKFGRAFRTKLKQ- 595
+ C N +S ++ +F T D + AF+ +
Sbjct: 529 KVHLDENAKATAFAKADSCLNGGSSDVIVSDSCQFKTLSGFEAADDRNGWEAFKHLVADE 588
Query: 596 --QANNAMNFREDN----KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
Q+N ++N N + L V+DTG GI + VF F Q D ST+R +GGTG
Sbjct: 589 DFQSNGSLNVLTTNDACENVTLVVSVEDTGIGIPLHAQDRVFMPFMQADSSTSRNYGGTG 648
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
+GLSI + LV MGG I V + G+ G ++K
Sbjct: 649 IGLSISKCLVELMGGHISFVSRPQVGSTFSFTAAFGRCKKNK 690
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 46/207 (22%)
Query: 911 REDLIHTMFRERHQIGSSR---RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACK 967
R ++ ++ +G +R +D P N SS + +L G +IL+ +D + + VA
Sbjct: 827 RASMVGACLQQVMGMGKTRPQGKDVP----NGSSFLQSLLYGKKILVVDDNMVNRRVAAG 882
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
L+K GA V G A++ L + P + FD MD QMP
Sbjct: 883 ALKKFGANVECADSGKAALKLL--------------------QLPHS--FDACFMDIQMP 920
Query: 1028 KMDGYEATIEIRKSESE-----------------HGARNIPIVALTAHAMNADEKKCLGV 1070
+MDG+EAT IR+ ES+ G ++PI+A+TA ++A +CL
Sbjct: 921 EMDGFEATRRIRQMESQANEQINGQSMAEGGAARKGEWHVPILAMTADVIHATYDECLKS 980
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ Y++KP + E + + + K P
Sbjct: 981 GMDGYVSKPFEEENLYQAVAKFFKAKP 1007
>gi|404451236|ref|ZP_11016206.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
gi|403763080|gb|EJZ24071.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
Length = 1452
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 162/282 (57%), Gaps = 41/282 (14%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL-KSDDQL 454
++K+ + ++LI+ + +A A++ KS+FLANMSHE+RTP+ +IG +IL K++
Sbjct: 787 ITKDKQFESQLIAETE---RANAASKSKSEFLANMSHEIRTPLNGVIGFTDILLKTELSH 843
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
+QY+ S LL L+N ILD SK+E+GK++LE E DL + L E +D+
Sbjct: 844 IQKQYAENANTAGKS--LLNLINDILDFSKIEAGKLDLELIETDLHQLLYETMDIIKYPA 901
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
N+E +LD++ NIP +V DP R+ QI NL+NN+IKFT GH+I++
Sbjct: 902 GQKNLEVILDINPNIPESVLLDPFRLRQILINLLNNAIKFTEKGHVILK----------- 950
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
+F T +E+ ++ L F V DTG GI +S+ + +F++F
Sbjct: 951 -VDFQT-----------------------KENQEIDLTFSVIDTGIGITESQQKKLFKAF 986
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D STTRK GGTGLGL+I L KMGG+I++ K G+
Sbjct: 987 SQADNSTTRKFGGTGLGLTISNLLAEKMGGKIQIESKEGKGS 1028
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 928 SRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
+ ++ P S S+ +I IL+AED + ++ +L + V V+ E
Sbjct: 1176 TEKNTPVPSQPSNRTDSKIEGEFTILVAEDISMNMLLLKTLLNNILNKVKVI-------E 1228
Query: 988 ALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA 1047
N +A E + + DLI MD QMP+MDG AT +IR E+E+
Sbjct: 1229 CSNGKIALEKYKEN--------------KVDLIFMDVQMPEMDGLTATQKIRNYEAENNI 1274
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+ PIVALTA A++ + +KC GM+ +LTKPI
Sbjct: 1275 KT-PIVALTAGALSEEREKCFKAGMDDFLTKPI 1306
>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
OS217]
gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
OS217]
Length = 1233
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 161/286 (56%), Gaps = 36/286 (12%)
Query: 407 ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
++ L+A+ AE +N YKS+FLANMSHE+RTPM AIIG+L+ L S QLT +Q + +
Sbjct: 706 VALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQ-LASRTQLTLQQQDYLNKAG 764
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
S+ +LLR++N ILD SK+E+GK+ELE+ F L+K L+ ++DM ++ VE +L
Sbjct: 765 FSAESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSP 824
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
++GDP R+ Q+ NL++N++KFT G I + CE++
Sbjct: 825 LTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDGEIELG--CEDVG---------------- 866
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
D +++L F V DTG GI + + +F++F Q D STTR++G
Sbjct: 867 -----------------ERDTQISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYG 909
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
GTGLGLSI + LV+ MGG + V + G+ L + E Q
Sbjct: 910 GTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTLSFDIAKELPQ 955
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 26/129 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILL ED + Q VA ++L+ G V + +G A++ + +
Sbjct: 1112 ILLVEDNFINQQVASELLKSAGYDVVIADNGQIALDLVAKQ------------------- 1152
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
FD +LMD QMP MDG A +R++ + + +PI+A+TAHAM+ D++K L G
Sbjct: 1153 ----EFDAVLMDIQMPVMDGLTAAKILRET---YSTQQLPIIAMTAHAMSGDKEKSLNAG 1205
Query: 1072 MNAYLTKPI 1080
MNA++TKPI
Sbjct: 1206 MNAHITKPI 1214
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 153/272 (56%), Gaps = 38/272 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR AEA+N KS+FLANMSHE+RTP+ +IG+ + L + +++ EQ + +K S+
Sbjct: 383 EARITAEAANRAKSEFLANMSHEIRTPLNGVIGMTD-LALETEMSREQREYMTTVKFSAD 441
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILD SK+E+GK++LE FD+++ +E + +++ +E + D+S ++P
Sbjct: 442 SLLTVINDILDFSKIEAGKVDLETISFDIRECVETTLKTLALRADEKGLELLCDVSADLP 501
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDPGR+ QI NL+ N+IKFT SG + +R + E P
Sbjct: 502 EVVLGDPGRLRQIVVNLVGNAIKFTGSGEVSLRVGL------ADPGEGPDQ--------- 546
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ F V DTG GI K E+VF SF Q D STTR++GGTGL
Sbjct: 547 --------------------MYFNVSDTGIGISPEKLESVFASFSQADTSTTRQYGGTGL 586
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
GL+I R LV MGG I +++PG Q +
Sbjct: 587 GLTISRRLVELMGGRIWC--ESTPGKGSQFHF 616
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 30/174 (17%)
Query: 910 RREDLIHTMFRERHQIGSSR---RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVAC 966
RR++L + R +GSS +D+ + ++ + L ILLAED + Q +A
Sbjct: 752 RRQELQDAIAR---ALGSSMDGIKDKSLITQSTLVADLPAVRSLHILLAEDNEVNQKLAV 808
Query: 967 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026
++L+K G +V V +G +AVEA ++ ++DL+LMD QM
Sbjct: 809 RLLQKRGHSVVVANNGREAVEA-----------------------SESRKYDLVLMDVQM 845
Query: 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
P+MDG +ATI IR E+ GAR + IVA+TA M D ++C+ M+ YL+KPI
Sbjct: 846 PEMDGIQATIAIRAREAGSGAR-LAIVAMTALVMKGDRERCMAADMDGYLSKPI 898
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 23/147 (15%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G+++L+ +D + + +L G V+ P+G A+ L+ + L+
Sbjct: 638 LLAGVKVLIVDDNKTNRRILEGLLRIWGMEVASAPEGDTALAMLHA----------AGLE 687
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADE 1064
GSP + L+L D MPKMDG+ ++++ S +P ++ L++ + D
Sbjct: 688 GSP--------YRLLLTDMHMPKMDGFMVVQQMKQDTS----LALPTVMMLSSGGHHGDA 735
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILR 1091
+C +G++AYL KP+ + + I R
Sbjct: 736 NRCEQLGISAYLLKPVRRQELQDAIAR 762
>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
Length = 802
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 155/291 (53%), Gaps = 36/291 (12%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LR S A+ AE + KS+FLANMSHE+RTP+ IIG+ E+L S+ L EQ
Sbjct: 127 EQELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELL-SETALDPEQ 185
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
QI+ + LL L+N ILD SK+E+GK+ LE FDL E+ VDM S++
Sbjct: 186 QEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHKKG 245
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ET++ + +++P + GDP R+ QI NL NN++KFT G + +R
Sbjct: 246 LETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELR--------------- 290
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+++ R D K+ L F+V DTG GI + K + +F F Q D
Sbjct: 291 --------------------ISLDDRSDGKVRLRFQVRDTGIGIAEEKVQNLFRVFTQVD 330
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
STTRK+GGTGLGLSI + L MGG I V + S G+ + G E
Sbjct: 331 SSTTRKYGGTGLGLSISKNLSEMMGGRIGVESRESVGSNFWFTAVFGLQEE 381
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 28/145 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G IL+AED + Q + ILE G V + +G +AV+A +
Sbjct: 552 LTGSIILVAEDHEVNQQLFKTILESFGHEVDLASNGKEAVQATH---------------- 595
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
R+DLI MD QMP+M+GYEAT IR S + PIVA+TA A+ +E++
Sbjct: 596 -------GRRYDLIFMDVQMPEMNGYEATSAIRSS-----GIDTPIVAVTASALRGEEER 643
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C VGM+ +L KP ++ + R
Sbjct: 644 CRNVGMSGFLVKPFKKRDLIPVLDR 668
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ +DTP ++ C L + G ++ +G A++ L R AAE +
Sbjct: 396 KVLVVDDTPSVREAVCAYLSEWGCSIECSSNGPAALDVL-RSQAAEGNG----------- 443
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC-LG 1069
F L ++D MP MDG++ E+ ES G R + ++ + DE K L
Sbjct: 444 ------FTLCIVDQMMPGMDGWQFASEVNSDESLRGIR---LFLMSPSGKSGDEAKMKLL 494
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
+ YL+KPI R+ +++
Sbjct: 495 HWYHGYLSKPIRKSRLFREMVK 516
>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
Length = 925
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 166/309 (53%), Gaps = 39/309 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S R+ R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RSLR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS-ESKQIYDADFPNTVVVLATVG 709
GL I + LV+ MGGEI + + G+ L L + YDA N +L
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPVNDGYDAQLLNHRHLLLIEP 542
Query: 710 SMERMIISQ 718
+M+ I Q
Sbjct: 543 NMQAAAIVQ 551
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMP MDG A I++ HG + P++A+TAHAM + + L GM+ YL
Sbjct: 709 FDIILMDIQMPHMDGVTACKSIKQL---HGYQETPVIAVTAHAMAGERDRLLKAGMDDYL 765
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 766 TKPIE-EHILQQVL 778
>gi|409198430|ref|ZP_11227093.1| PAS/PAC sensor hybrid histidine kinase [Marinilabilia salmonicolor
JCM 21150]
Length = 1033
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 162/295 (54%), Gaps = 48/295 (16%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
R+AEA N KS+FLANMSHE+RTPM IIG E+L +L EQ + + I +S LL
Sbjct: 526 REAEA-NKAKSEFLANMSHEIRTPMNGIIGATELL-GQTRLNREQQNIITIISRSCDNLL 583
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
++N ILD SK+E+GKM++E+ F+++ ++ L+D + + + N+E + + + IP N+
Sbjct: 584 NIINDILDFSKIEAGKMKIESYSFNIRSTVDYLLDQMAFRSHDKNLELIASVEETIPSNL 643
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD GR+ QI NL+ N++KFT G ++++ E
Sbjct: 644 LGDEGRLIQIIINLMGNAVKFTQEGEVVLKVDLE-------------------------- 677
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
KQ+ N L + F ++D+G GI K E +FESF Q D STTRK+GGTGLG S
Sbjct: 678 KQEGQN---------LNVHFAIEDSGIGIPPDKREKIFESFTQADGSTTRKYGGTGLGTS 728
Query: 654 IVRTLVNKMGGEIKVVKKN--------SPGTLMQLYLLLGASSESKQIYDADFPN 700
I + LV MGG+I V N +PG++ L A +++Q DF N
Sbjct: 729 ISKMLVELMGGKIWVESPNPNFAWSAENPGSVFHFILPFKADKKNQQ---DDFKN 780
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 29/159 (18%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
D SS N +S K E +ILL ED P+ Q + K+L ++G ++ +G +AV+ L
Sbjct: 900 DTDKSSDNYNSKPK---ENKKILLVEDNPINQKITEKMLSRIGMVTTITNNGAEAVDLL- 955
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
+ FD ILMD QMP ++G +AT E+RK+ +
Sbjct: 956 --------------------IKNQETFDAILMDIQMPVLNGLDATRELRKA-----GIST 990
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
PI+A+TA+ + D + CL GMN Y+ KP+ + TI
Sbjct: 991 PIIAMTANVLKGDREACLEAGMNDYIGKPVKLNDLQHTI 1029
>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
Length = 1010
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 169/295 (57%), Gaps = 18/295 (6%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYA 471
+++AE ++ KSQFLA +SHE+RTPM ++G+L +L D +T + Y Q S A
Sbjct: 405 KKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQ--DSGKA 462
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+ESGK+ELE F+L+ +L++++ +FS + +E + +SD++P
Sbjct: 463 LVSLINEVLDQAKIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDSVPE 522
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHI-----IIRGWCENLD----TSKNT--AEFPT 580
+ GDPGR QI +NL+ NSIKFT GHI +++ E++D +SKN+ + +P
Sbjct: 523 TLVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSKNSTLSGYPV 582
Query: 581 DRKKFGRA-FRTKLKQQANNAMNFRED--NKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
++ A FRT Q+ + A +F + + L V+DTG GI +F F Q
Sbjct: 583 ANRRLSWAGFRT-FSQEGSTACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQV 641
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
PS +R HGGTG+GLSI + LV M GEI V G+ + S S +
Sbjct: 642 RPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNCSNSSE 696
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G +IL+ +D + +IVA L++ GA V G A++ L
Sbjct: 858 RNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIQLL-------------- 903
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE------------SEHGARN-- 1049
TP FD MD QMP+MDG+EAT IR+ E S+ N
Sbjct: 904 -------TP-PHHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTC 955
Query: 1050 ---IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM---VSTILRLTKN 1095
+PI+A+TA + A ++CL GM+ Y++KP + ER+ VS T N
Sbjct: 956 YWRVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREVSQFFHSTSN 1007
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 157/264 (59%), Gaps = 16/264 (6%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KS FLANMSHE+RTPM ++G+ ++L + LT EQ V +K S
Sbjct: 1012 AREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTN-LTPEQIDFVQTLKLSGQN 1070
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILDLSK+E+G+M LE EF+L + E++D+ + +E V + ++P
Sbjct: 1071 LLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALIDTDVPL 1130
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD R+ QI +NLINN+IKFT +G ++I E D S +D +K
Sbjct: 1131 QIKGDAARLRQILTNLINNAIKFTEAGEVVI----EVADASNPGLLAASDNQKILEKIE- 1185
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
LK + N++M L F+V DTG GI + +F+SF Q D STTRK+GGTGLG
Sbjct: 1186 PLKIENNDSM--------LLLFKVTDTGIGIATEDQKKLFQSFTQVDASTTRKYGGTGLG 1237
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L+I + LV MGG+I V +++PG
Sbjct: 1238 LAISKELVELMGGQIGV--ESTPG 1259
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 30/162 (18%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
+S+ +S+ R L L+ILL EDTP+ Q V L +G V +G +A+ M+A
Sbjct: 1429 TSNRASAIDNRDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALS----MVA 1484
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA------- 1047
+ ++D++LMDCQMP +DGYEAT+++R E+ A
Sbjct: 1485 LK-------------------KYDIVLMDCQMPVLDGYEATLQLRGLEAADLAAGKMESH 1525
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ ++A+TA+A+ D +KCL GM+ Y++KPI E++ S +
Sbjct: 1526 QKTVVIAMTANALKGDREKCLAAGMDDYISKPISIEKLKSVL 1567
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRR 1001
N + +L G ++L+A D P ++ V ++ G V V +G + +L + ++ S
Sbjct: 1285 NLETVLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTIASLYKAVSLNSP--- 1341
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
+D++L+D Q+P+M ++E R SE + V LT+
Sbjct: 1342 ---------------YDIVLVDIQLPEM--VAGSLE-RLRISEPAMQQTKWVVLTSMTQL 1383
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
A+ K+ + G + YLTKP+ + R+ +
Sbjct: 1384 AEAKRLVDSGFSGYLTKPVKAHRLFDCL 1411
>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
Length = 827
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 167/327 (51%), Gaps = 45/327 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE ++ K++FLANMSHE+RTPM IIG+ ++L S+ +L +Q V I+ SS A
Sbjct: 440 AKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLL-SETELHEDQEQYVQIIRTSSKA 498
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL+++N ILDL+++ESGK+ LE +FDL+ +E VD+ S ++ ++ + +PR
Sbjct: 499 LLKIINDILDLTRMESGKLSLEPVDFDLESCIENAVDILRPVASEKGLDLTVNYASGLPR 558
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
VR D GR+ QI NL+ N++KFT+SG + +R C +
Sbjct: 559 TVRADDGRLRQILVNLVGNAVKFTASGRVDVRVLCAST---------------------- 596
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
N L +V DTG G+ ++ +F+ F Q D +TTR GGTGLG
Sbjct: 597 ---------------NPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLG 641
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD-------FPNTVVV 704
L+I R L +M G+I V G+ L++ A DAD V+
Sbjct: 642 LTISRLLAKQMDGDITVYSDPGRGSCFSLHIQCQAPLGLPGHIDADEAPDLDLIYGCKVL 701
Query: 705 LATVGSMERMIISQWLRKKKVSTLETS 731
LA R++I ++L V +E S
Sbjct: 702 LAEDNRTNRLLIRKYLSDLSVDLIEAS 728
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 26/141 (18%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
++ G ++LLAED +++ K L + + +G +AVE L A
Sbjct: 694 LIYGCKVLLAEDNRTNRLLIRKYLSDLSVDLIEASNGQEAVE-----LCAHH-------- 740
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
R DLILMD MP+MDG AT IR ++ H PIVALTA+A +D +
Sbjct: 741 ----------RPDLILMDMSMPEMDGLTATRLIRMPQNPH---QPPIVALTANAFASDRE 787
Query: 1066 KCLGVGMNAYLTKPIDSERMV 1086
CL GMN +L+KPI+ ++
Sbjct: 788 ACLAAGMNGFLSKPINKRELL 808
>gi|399994994|ref|YP_006575226.1| two-component sensor histidine kinase/response regulator hybrid
protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398659542|gb|AFO93507.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
Length = 759
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 176/337 (52%), Gaps = 42/337 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR+ A+ +N KS+FLANMSHE+RTPM +IG+ E++ D L +Q I KS
Sbjct: 228 EARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETD-LDEDQTMYAETISKSGS 286
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N IL+ SK+E+GKMELE F+LQ +E++V + S + + NVE L ++P
Sbjct: 287 ALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLP 346
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GD GR+ QI +N+ N++KFT G++ I + S T
Sbjct: 347 ECYEGDVGRIRQILTNVAGNAVKFTGKGYVYI-------EVSGET--------------- 384
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+D++ AL V DTG GI + + + +F +FEQ D + TR + GTGL
Sbjct: 385 --------------DDDRTALRISVTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGL 430
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS-SESKQIYDA-DFPNTVVVLATV 708
GL+I L+ MGG I V + G++ + L L S+ K+ DA DF ++
Sbjct: 431 GLAISTRLLELMGGRISVQSELGKGSVFAIDLPLRIRPSQPKRAQDARDFKGLRALVVDD 490
Query: 709 GSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+ R+I+++ L V ++ H Q L LLD
Sbjct: 491 LELNRIILTERLATWGVQSVAAGSAH---QALELLLD 524
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 23/154 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+++LLAED Q+V ++L+ V + +G +AV + P
Sbjct: 629 VKLLLAEDNRTNQLVVSRMLKAAPIEVLIAANGEEAVTMFQ--------------EHHP- 673
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
D++LMD MP DG +AT EIR+ E ++G P+VALTA+A+ + ++CL
Sbjct: 674 --------DIVLMDMMMPVKDGIDATAEIRQLEKDNGLGRCPVVALTANALQSHREECLA 725
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ +L+KPI+ + ++ + + P TGT
Sbjct: 726 AGMDDFLSKPINKKALLGAVGKWVDCGPLLKTGT 759
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
S + R +GLR L+ +D L +I+ + L G QA+E L
Sbjct: 469 SQPKRAQDARDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQALELLL----- 523
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
SR D +D+IL D QMP MDG E IR R++PIV L
Sbjct: 524 -DSRH------------DGTHYDVILQDFQMPGMDGKELAERIRDIPE---YRDLPIVIL 567
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
++ D + +G KP+ + ++ S + R+ + EA
Sbjct: 568 SSVENTIDREAREHLGRCEVALKPLRAAQLQSVMSRVLETATEEA 612
>gi|443311633|ref|ZP_21041259.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442778362|gb|ELR88629.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 1049
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 162/286 (56%), Gaps = 29/286 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE++ KSQFLANMSHE+RTPM AI+GL +IL + QLT +Q V I+ SS
Sbjct: 401 AKVAAESATRLKSQFLANMSHEIRTPMNAIVGLTDILLTM-QLTPQQQDFVNTIQSSSDT 459
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+ESGK+ELE F+L+ +EE +D+ + + + N+E ++ +P
Sbjct: 460 LLMLINDILDLSKIESGKLELEQYSFNLRDFVEESLDLLAFKAAEKNIELAYLIAPEVPN 519
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ D R+ QI NL++N++KFTS+G +I+ L T K
Sbjct: 520 LLVADVIRLRQILVNLLSNAVKFTSTGEVIVLVTARKLQTPK------------------ 561
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
K + F+ F V DTG GI + +F+SF Q D STTR++GGTGLG
Sbjct: 562 --KNTIDTHYEFK--------FAVKDTGVGIPLERQHRLFKSFSQVDSSTTRQYGGTGLG 611
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD 697
L+I + L KMGG++ + + G+ ++ A++ S+ + + D
Sbjct: 612 LAIGKQLSEKMGGQMWCESQANCGSTFYFTIIAPAAANSQILVEQD 657
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 27/140 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q VA +L+++G V DGL+ + ALN
Sbjct: 807 LSILLAEDNIVNQKVALHLLQQLGYAADVAKDGLEVLAALNHQ----------------- 849
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ILMD QMPKMDG AT +I S H R I+A+TA+AM D ++CL
Sbjct: 850 ------HYDVILMDVQMPKMDGLAATRQIIAS---HRVRP-RIIAMTANAMQGDREECLN 899
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KPI +++ + +
Sbjct: 900 AGMDDYLSKPIRLDQLAAAL 919
>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 176/331 (53%), Gaps = 15/331 (4%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ S+ LVI + I+ + ++ + +++AE ++ KSQFLA +SHE+
Sbjct: 375 ITTSIGTLVIALLIGYIIYATAKRIARVEDDFQEMSVLKKRAEDADIAKSQFLATVSHEI 434
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+ELE
Sbjct: 435 RTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEA 493
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSIKF
Sbjct: 494 VPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKF 553
Query: 555 TSSGHIIIRGW-------CENLDTSKNTAE----FP-TDRKKFGRAFRTKLKQQANNAMN 602
T GHI + C ++T +A +P +RK+ FR ++ ++ M
Sbjct: 554 TEKGHIYLTVHVVEEIMNCLEVETGTQSANTLSGYPVANRKRSWENFRVFSRELNSSEMP 613
Query: 603 FR--EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
F + ++L V+DTG GI VF F Q PS R HGGTG+GLSI + LV
Sbjct: 614 FAPIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVG 673
Query: 661 KMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
M GEI K G+ +L + S+
Sbjct: 674 LMRGEIGFASKPQVGSTFTFTAVLTRAHSSR 704
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L RIL+ +D + VA L+K GA V+ G +A+ L
Sbjct: 859 LLHKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLK--------------- 903
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE--------------HGARN-- 1049
P + FD MD QMP+MDG+EAT IR E + G R
Sbjct: 904 --PPHS-----FDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECAGLRQWR 956
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ + R +N
Sbjct: 957 TPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFQN 1002
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 180/349 (51%), Gaps = 35/349 (10%)
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
TL ++ + VIG + IL + +K+ + + + +AEA++ KSQFLA
Sbjct: 328 TLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIAKSQFLAT 387
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM I+G+L +L D +L++ Q + AL+ L+N +LD +K+E+GK
Sbjct: 388 VSHEIRTPMNGILGMLALL-LDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGK 446
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ELE FDL+ L++++ +FS + + VE + +SD +P V GDPGR Q+ +NL+
Sbjct: 447 LELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVG 506
Query: 550 NSIKFTSSGHIIIR--------------------GWCENLDTSKNTAEFPT-------DR 582
NS+KFT GHI ++ G E+ S N +F T D
Sbjct: 507 NSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSED-GASHNKHQFETLSGFEAADN 565
Query: 583 KKFGRAFRTKLKQ--QANNAMNFREDNKLA----LCFEVDDTGCGIDQSKWETVFESFEQ 636
+ F+ + Q N + N N+++ + V+DTG GI S VF F Q
Sbjct: 566 QNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTGIGIPLSAQGRVFMRFMQ 625
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
D ST+R +GGTG+GL I + LV MGG+I V K G+ + G
Sbjct: 626 ADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSFTAVFG 674
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 39/190 (20%)
Query: 925 IGSSRRDQPCSS-SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
+GS ++ Q +N S+ K +L G +IL+ +D + + VA L+K GA V V G
Sbjct: 833 LGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGK 892
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES 1043
A+ +LLQ S FD MD QMP+MDG+EAT IR ES
Sbjct: 893 AAL---------------ALLQLPHS-------FDACFMDIQMPEMDGFEATRRIRMMES 930
Query: 1044 E---------HGARN-------IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
+ +G N +PI+A+TA ++A +CL GM+ Y++KP + E +
Sbjct: 931 KENEVLIRESNGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQ 990
Query: 1088 TILRLTKNMP 1097
+ + P
Sbjct: 991 AVAKFFNTKP 1000
>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1230
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 157/262 (59%), Gaps = 36/262 (13%)
Query: 407 ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
++ L+A++ AE++N YKS+FLANMSHE+RTPM AIIG+L+ L S QLT +Q + +
Sbjct: 706 VALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQ-LASRTQLTPQQADYLDKAG 764
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
S+ +LLR++N ILD SK+E+GK+ELE F L K L+ +D+ +++ VE +L
Sbjct: 765 FSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAP 824
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
+ GDP R+ Q+ N+++N++KFT SG I + CE++
Sbjct: 825 VTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELG--CEDVG---------------- 866
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
D+++ L F V DTG GI + + E++F++F Q D STTRK+G
Sbjct: 867 -----------------ERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYG 909
Query: 647 GTGLGLSIVRTLVNKMGGEIKV 668
GTGLGLSI + LV+ MGG ++V
Sbjct: 910 GTGLGLSISKHLVSMMGGTMQV 931
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED + Q VA ++L+ G V V +G A++ +
Sbjct: 1111 QILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMV--------------------- 1149
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D ++D +LMD QMP MDG AT E+RK + +P++A+TAHAM+ D +K L
Sbjct: 1150 --DAKQYDAVLMDIQMPVMDGLTATKELRK---RYTKEELPVIAMTAHAMSGDREKSLAA 1204
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMNA++TKPI + T+
Sbjct: 1205 GMNAHITKPIVLNELFDTL 1223
>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
Length = 1039
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 169/310 (54%), Gaps = 22/310 (7%)
Query: 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMS 431
++ + S ILVI + I+ VS+ K+ + ++KAEA++ KSQFLA +S
Sbjct: 401 VLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVS 460
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HE+RTPM ++G+L +L D +L Q V + S AL+ L+N +LD +K+ESGK+E
Sbjct: 461 HEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLE 519
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FDL+ L++++ +FS + VE + +SD +P + GDPGR QI +NL+ NS
Sbjct: 520 LEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNS 579
Query: 552 IKFTSSGHI-----IIRGWCENLDTSKNTAEFP---------TDRKKFGRAFRTKLKQQA 597
IKFT GHI ++ E++D TA P DR++ F K +
Sbjct: 580 IKFTEKGHIFVTVHLVEELFESIDG--ETASSPESTLSGLPVADRQRSWENF----KAFS 633
Query: 598 NNAMNFREDN-KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
N +F + L V+DTG GI +F F Q PS +R HGGTG+GLSI +
Sbjct: 634 NEHRSFEPSPLDINLIVSVEDTGVGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 693
Query: 657 TLVNKMGGEI 666
LV M GEI
Sbjct: 694 CLVGLMKGEI 703
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 40/192 (20%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G R+ P + + +L G +IL+ +D + VA L+K GA V G++
Sbjct: 868 LGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIK 927
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ SLL+ P E FD MD QMP+MDG+EAT IR E E
Sbjct: 928 AI---------------SLLK-PPHE------FDACFMDIQMPEMDGFEATRRIRDMEEE 965
Query: 1045 HGAR-----------------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
R ++P++A+TA + A ++CL GM+ Y++KP ++E++
Sbjct: 966 MNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYR 1025
Query: 1088 TILRLTKNMPSE 1099
+ R N PS+
Sbjct: 1026 EVSRFF-NSPSD 1036
>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 146/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE ++ KSQFL NMSHE+RTPM +IG+ E+L D L EQ + +S A
Sbjct: 348 ARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLL-DSPLAEEQRQIADTVAESGRA 406
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL+++N ILD SK+E+GK++LEN FD+ +EE +F+ + +E V+D++D++P
Sbjct: 407 LLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVDMADDVPP 466
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDPGR+ Q+ NL++N++KFT G++++ ++ T
Sbjct: 467 LLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSAT---------------- 510
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ + D+G GI+ +F F Q D STTRK+GGTGLG
Sbjct: 511 -------------------IVVSIRDSGIGIEPQHIPQLFRPFSQADGSTTRKYGGTGLG 551
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
LSI + L+ MGG+I V + G+
Sbjct: 552 LSICQDLIGHMGGQIHVFSQPGQGS 576
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 78/140 (55%), Gaps = 24/140 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED P+ Q VA +LEK+G V++ DG +A+ A S
Sbjct: 747 RVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAY-------------------SH 787
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+P FDL+ MDCQMP MDGYEAT IR E +H PI+A+TAH + D ++CL
Sbjct: 788 SP----FDLLFMDCQMPNMDGYEATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKA 843
Query: 1071 GMNAYLTKPIDSERMVSTIL 1090
GM+ YL KP + R V T+L
Sbjct: 844 GMDDYLGKPF-TMRQVRTLL 862
>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
Length = 683
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 149/274 (54%), Gaps = 26/274 (9%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLA+MSHE+RTPM AI+G+ E+L + L+ EQ V + + LL ++N I
Sbjct: 150 NRAKSDFLASMSHEIRTPMHAILGMAELL-LETPLSPEQQRYVEIFRNAGENLLNIINDI 208
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD+SKVE+G +ELEN EFDL + +E V+ +++ +E + ++P N+ GDP R
Sbjct: 209 LDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGDPVR 268
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ QI NL+ N+IKFT G +++ +++ S P
Sbjct: 269 LQQILINLVGNAIKFTEKGEVVV-----HVEKSTELTGGPE------------------- 304
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
E K+ L F + DTG GI Q K + +FE F Q D STTRKHGGTGLGLSI R LV
Sbjct: 305 -TGTEEGGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLV 363
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
MGG I++ + GT +E K++
Sbjct: 364 EMMGGHIRLDSEVGKGTTATFTARFSVQAEGKKL 397
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%)
Query: 1014 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1073
T R+DL+ MD QMP+MDGY AT EIRK E EH R PIVALTA+A D +K L G N
Sbjct: 598 TGRYDLVFMDIQMPEMDGYTATREIRKWEREHQLRETPIVALTAYAYKEDRRKSLDAGCN 657
Query: 1074 AYLTKPIDSERMVSTILRLTK 1094
+L KPI ++ I T+
Sbjct: 658 GHLVKPIKKAVLLEAISEYTE 678
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 21/148 (14%)
Query: 955 AEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE------------SSRRRS 1002
AE L +IV + + G ++ D A NRM+ E R
Sbjct: 392 AEGKKLAEIVEAGVEKLTGLRTFIIDDN-----ATNRMILREILSGWGSCSDEADGGERG 446
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
+++ + P +DL+L+D QMP +DG+ I+++ S G IPIV LT+
Sbjct: 447 IVKMQKAREAGKP-YDLLLLDYQMPGLDGFGVAERIQRNPSLAG---IPIVMLTSDLGRG 502
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
D ++ +G+ ++LTKP+ + + IL
Sbjct: 503 DPRRFRELGIASFLTKPVKRAELKNAIL 530
>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1242
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 163/316 (51%), Gaps = 45/316 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KSQFLANMSHE+RTPM ++G+ +L + L +Q V I+ S+
Sbjct: 571 AREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTE-LDTKQKDFVQAIRTSADH 629
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ ++ELE +FDL++ LE ++D+ + Q N +E + N+PR
Sbjct: 630 LLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPR 689
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDPGR+ Q+ NL++N IKFT +G + +R
Sbjct: 690 YLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR---------------------------- 721
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N+ + L L +EV DTG GI E VFE+F Q D STTRK GGTGLG
Sbjct: 722 -----VSRPPNYDINAPLTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLG 776
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVL------ 705
L I + L+ MGGEI + G+ L S SK + P+T+ L
Sbjct: 777 LVICKQLLEVMGGEIGLESVVDQGSTFWFTLPF---SISKTASFPNLPDTLTKLKILVVD 833
Query: 706 --ATVGSMERMIISQW 719
A+V R +I W
Sbjct: 834 ANASVRQSVRYLIQSW 849
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED P+ Q V L +G + +G Q +E LN
Sbjct: 982 LKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDR----------------- 1024
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMPK+DGY T E+RK E R+ ++ALTAHAM +D +KCL
Sbjct: 1025 ------HYDLVFMDCQMPKLDGYATTEELRKREGND--RHTTVIALTAHAMPSDRQKCLS 1076
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KPI E +
Sbjct: 1077 AGMDDYISKPITQEEL 1092
>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1313
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 161/288 (55%), Gaps = 35/288 (12%)
Query: 392 LTNGVSKEMKLRAELISHLDARR---KAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
L N + E + A + + L RR +A+ ++ KS FLA+MSHE+RTPM +IG+ +L
Sbjct: 761 LQNFIVIETDITARVDTELALRRAKTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLL 820
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
D L+ EQ V I+ S ALL ++N ILD SK+ESGKM+LE+ F+L LEE +D
Sbjct: 821 METD-LSPEQRDFVNTIRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLD 879
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+F++Q S ++E ++ ++P + GD R+ QI NL+NN++KFTS+G I I
Sbjct: 880 LFALQASAKHLELAYHIAPDVPEWIIGDITRLRQIVVNLVNNAVKFTSAGSIAI------ 933
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ + P + K+F L F V DTG GI + +
Sbjct: 934 -EVRRRPPTVPANLKRF------------------------PLEFVVRDTGIGIPAERLD 968
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+F++F Q D STTRK+GGTGLGL+I + L MGG I+V K G+
Sbjct: 969 RLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKVGEGS 1016
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 25/143 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q VA + LE++G V +G +AV L ++R
Sbjct: 1183 LDILLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTL-------AARH--------- 1226
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ L+LMD QMP+MDG EA+ +IRK +R IVALTA+AM D ++CL
Sbjct: 1227 -------YHLVLMDLQMPEMDGLEASRQIRKKVP--ASRQPKIVALTANAMQGDRERCLE 1277
Query: 1070 VGMNAYLTKPIDSERMVSTILRL 1092
GM+ Y++KP+ + + I RL
Sbjct: 1278 AGMDDYISKPVKLHEIEAAIRRL 1300
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 163/276 (59%), Gaps = 38/276 (13%)
Query: 403 RAELISH--LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
R +L+S + A+ A+A+N KS FLANMSHE+RTPM AIIG+ ++ +L +Q +
Sbjct: 1015 RLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDRKQRN 1073
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
V +I+++S +LL ++N ILD SK+E+GK+++E F L LE+L DMFSV+ ++ +E
Sbjct: 1074 YVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLE 1133
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
+ ++ +P ++ GDP R+ Q+ NL+NN+IKFT G +++ + +E
Sbjct: 1134 LLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVML-----------SISELA- 1181
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
R+++++ L F V D+G G+ + +F+SF Q D S
Sbjct: 1182 -----------------------RDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTS 1218
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TTRK+GGTGLGL+I + LV MGGEI V + G+
Sbjct: 1219 TTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGS 1254
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 31/185 (16%)
Query: 907 SSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVAC 966
S+SR D I + + R+ QP + S L+G RILL ED + Q VA
Sbjct: 1382 SASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSG-----LKGKRILLVEDNEMNQEVAS 1436
Query: 967 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026
+ LE+VG +S+ +G A+E L + FDL+LMDCQM
Sbjct: 1437 EFLEQVGVVLSIADNGQIALEKLGQQ-----------------------SFDLVLMDCQM 1473
Query: 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMV 1086
P MDGY+AT E+RK G +P+VA+TA+AM D++ CL GMN ++ KPI+ +
Sbjct: 1474 PVMDGYQATRELRKL---PGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILY 1530
Query: 1087 STILR 1091
T+L+
Sbjct: 1531 QTLLQ 1535
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
+ N+ N ++ LEG+ +L+ +D + + L+ +G +V G++A+E A
Sbjct: 1265 AQNAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEK-----CA 1319
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
E R + L+D +MP+MDG E +R+ + P I+
Sbjct: 1320 ERDYR------------------IALIDWKMPEMDGTETAARMRE------LKQPPLILM 1355
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AHA + K +G+N Y+TKPI + R++ I+
Sbjct: 1356 VSAHANSEFIDKVEEMGINGYITKPISASRLLDGIM 1391
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 38/329 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I+IS++V I+V+ I+ T +E + + L R AEA++ KSQFLA +SH
Sbjct: 533 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGR--AEAADVAKSQFLATVSH 590
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D +L Q V ++S +L+ L+N +LDL+K+ESGK+EL
Sbjct: 591 EIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIEL 649
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FD++ L+ +V +FS + +E + +SD +P + GDP R QI +NL+ NS+
Sbjct: 650 EAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSM 709
Query: 553 KFTSSGHIIIRGWC----------------ENLDT---SKNTAEFPT-------DRKKFG 586
KFT GHI IR EN++ SKNT + T + +K
Sbjct: 710 KFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTL 769
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+FR + + +++A+ + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 770 ESFR--MFKDSSDAI-----DSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYG 822
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTG+GLSI + LV MGGEI V K PG
Sbjct: 823 GTGIGLSITKRLVELMGGEIGFVSK--PG 849
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 39/163 (23%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G IL+ +D + +IVA L+K GA V+ V G +A+ L
Sbjct: 1034 RSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRL-------------- 1079
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE--------------HGAR- 1048
+ P +FD MD QMP+MDG+EAT +R ES+ +G +
Sbjct: 1080 ------QPPH--KFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKA 1131
Query: 1049 --NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
++PI+A+TA + A + C+ GM+ Y+ KP + +++ S +
Sbjct: 1132 HWHVPILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAV 1174
>gi|451971012|ref|ZP_21924235.1| Signal transduction histidine kinase [Vibrio alginolyticus E0666]
gi|451933117|gb|EMD80788.1| Signal transduction histidine kinase [Vibrio alginolyticus E0666]
Length = 631
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 156/270 (57%), Gaps = 36/270 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+ R +AE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS+
Sbjct: 232 EERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLL-GDTKLDPQQKEFVEIIDSSSH 290
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+L+ +++ ILD SKVE+GK+ELEN +DL++ L++++ + +V+ N++ + D+ ++P
Sbjct: 291 SLMTIIDDILDFSKVEAGKVELENASYDLRRILDDVISLHTVKAKQKNLQLLSDIDPHLP 350
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GD R+ Q+ +NL++N+IKFT GH+
Sbjct: 351 AEVQGDAARLKQVLNNLLSNAIKFTDRGHV---------------------------KLL 383
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L +Q ++ R F V D+G GI + + +FE F+Q D STTRK+GGTGL
Sbjct: 384 VELTRQEHDVAMIR--------FRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGL 435
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GL+I LVN MGGEI++ + G+ +
Sbjct: 436 GLAIGAQLVNLMGGEIQLTSELGLGSCFEF 465
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 25/134 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ EDT + Q V +LEK+G VSV G +A++ +
Sbjct: 504 VLIVEDTIVNQKVVRIMLEKLGVRVSVANHGEEALQLCEKQ------------------- 544
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
FDL+ MDCQMP MDG+ T IR+ E G +++PI+AL+A+ + D++ C VG
Sbjct: 545 ----AFDLVFMDCQMPVMDGFITTERIRQM-GEWG-KHVPIIALSANVIKEDQQHCFDVG 598
Query: 1072 MNAYLTKPIDSERM 1085
MN ++ KP+ +R+
Sbjct: 599 MNEFVAKPVTKDRL 612
>gi|423067354|ref|ZP_17056144.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406710928|gb|EKD06130.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1242
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 163/316 (51%), Gaps = 45/316 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KSQFLANMSHE+RTPM ++G+ +L + L +Q V I+ S+
Sbjct: 571 AREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTE-LDTKQKDFVQAIRTSADH 629
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ ++ELE +FDL++ LE ++D+ + Q N +E + N+PR
Sbjct: 630 LLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPR 689
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDPGR+ Q+ NL++N IKFT +G + +R
Sbjct: 690 YLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR---------------------------- 721
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N+ + L L +EV DTG GI E VFE+F Q D STTRK GGTGLG
Sbjct: 722 -----VSRPPNYDINAPLTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLG 776
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVL------ 705
L I + L+ MGGEI + G+ L S SK + P+T+ L
Sbjct: 777 LVICKQLLEVMGGEIGLESVVDQGSTFWFTLPF---SISKTASFPNLPDTLTKLKILVVD 833
Query: 706 --ATVGSMERMIISQW 719
A+V R +I W
Sbjct: 834 ANASVRQSVRYLIQSW 849
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED P+ Q V L +G + +G Q +E LN
Sbjct: 982 LKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDR----------------- 1024
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMPK+DGY T E+RK E R+ ++ALTAHAM +D +KCL
Sbjct: 1025 ------HYDLVFMDCQMPKLDGYATTEELRKREGND--RHTTVIALTAHAMPSDRQKCLS 1076
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KPI E +
Sbjct: 1077 AGMDDYISKPITQEEL 1092
>gi|381159819|ref|ZP_09869051.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380877883|gb|EIC19975.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 970
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 178/313 (56%), Gaps = 23/313 (7%)
Query: 391 ILTNGVSKEMKLRAEL-ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
++ GV++++ + EL S L+A+ +AE++N K+ LAN+SHELRTPM++IIGL ++L
Sbjct: 303 MVIEGVARDVSTQKELEASLLEAKERAESANRAKTALLANVSHELRTPMSSIIGLAKLLL 362
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
D + Q +I+ ++ +LLR+L+ IL +SK+E+G++ LE +F L + LE++
Sbjct: 363 QAD-IPPAQRDRANKIRAAAQSLLRILDDILAVSKMEAGRVRLEERDFMLDEVLEQIASF 421
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+++ ++ + +PR++RGDP R+ Q+ NL +N+IKFT SG +++ C
Sbjct: 422 AAIRNREPLLDIAFAIGPGVPRHLRGDPVRLGQVLLNLTSNAIKFTPSGSVLL---C--- 475
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+A R + +A + R+ + L F ++DTG GI +
Sbjct: 476 ---------------IEQAARAPGRSEAVGQPDQRDRRSVRLKFALEDTGIGIASEDLQR 520
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
+F+ F Q D S +R GGTGLGL+I R LV MGG+I+V + G++ + G S E
Sbjct: 521 LFQPFSQLDASASRTQGGTGLGLAISRHLVQLMGGDIEVESQPQGGSIFRFAAEFGLSQE 580
Query: 690 SKQIYDADFPNTV 702
+Q+ ++P V
Sbjct: 581 EEQLSGPNWPEPV 593
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+I G R+L+A+D + + +A +LE +G V+ DG +A+ L R
Sbjct: 738 QIPPGTRVLVADDHAVNREIAVDVLEGLGFEVTAAADGFEALACLGR------------- 784
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
RFD +L+D +MP +DG+E T +R ++ +P++ALTAH M E
Sbjct: 785 ----------ERFDAVLIDIRMPGLDGFEVTERLR---ADPRLARLPVIALTAHGMIEGE 831
Query: 1065 KKCLGVGMNAYLTKPID 1081
C G GM+ L+KP+D
Sbjct: 832 HLCRGAGMSGLLSKPLD 848
>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
Length = 927
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 151/266 (56%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQADYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S RA R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RALR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R +GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRCYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + +FD+ILMD QMP MDG A I++ + G R+ P++A+TAHAM + + L
Sbjct: 702 EQAQSRQFDIILMDIQMPHMDGVTACKAIKQLK---GYRDTPVIAVTAHAMAGERDRLLK 758
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 759 AGMDDYLTKPIE-EHILQQVL 778
>gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25]
gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25]
Length = 631
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 156/270 (57%), Gaps = 36/270 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+ R +AE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS+
Sbjct: 232 EERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLL-GDTKLDPQQKEFVEIIDSSSH 290
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+L+ +++ ILD SKVE+GK+ELEN +DL++ L++++ + +V+ N++ + D+ ++P
Sbjct: 291 SLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVKAKQKNLQLLSDIDPHLP 350
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GD R+ Q+ +NL++N+IKFT GH+
Sbjct: 351 AEVQGDAARLKQVLNNLLSNAIKFTDRGHV---------------------------KLL 383
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L +Q ++ R F V D+G GI + + +FE F+Q D STTRK+GGTGL
Sbjct: 384 VELTRQEHDVAMIR--------FRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGL 435
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GL+I LVN MGGEI++ + G+ +
Sbjct: 436 GLAIGAQLVNLMGGEIQLTSELGLGSCFEF 465
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 25/134 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ EDT + Q V +LEK+G VSV G +A++ +
Sbjct: 504 VLIVEDTIVNQKVVRIMLEKLGVRVSVANHGEEALQLCEKQ------------------- 544
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
FDL+ MDCQMP MDG+ T IR+ E G +++PI+AL+A+ + D++ C VG
Sbjct: 545 ----AFDLVFMDCQMPVMDGFITTERIRQM-GEWG-KHVPIIALSANVIKEDQQHCFDVG 598
Query: 1072 MNAYLTKPIDSERM 1085
MN ++ KP+ +R+
Sbjct: 599 MNEFVAKPVTKDRL 612
>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
Length = 1284
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 163/312 (52%), Gaps = 36/312 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE++ K+ FLANMSHE+RTPM A+IG+ + S QL +Q V +I++S
Sbjct: 521 AKHEAESAAQAKASFLANMSHEIRTPMNAVIGMAHLALST-QLDPQQRDYVEKIQRSGQH 579
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +LN ILDLSK+E+GK+E+E +F L++ L + D+ S + + +E V+D+ ++P
Sbjct: 580 LLGILNDILDLSKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPD 639
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++RGDP R+ Q+ N N++KFT G I+IR ++ E R +
Sbjct: 640 SLRGDPLRIRQVLINFTTNAVKFTERGEIVIR-------VARCAGEHAESRVR------- 685
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L FEV DTG GID +F SFEQ D STTR++GG+GLG
Sbjct: 686 -------------------LHFEVRDTGIGIDADAIPRLFRSFEQADSSTTRRYGGSGLG 726
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTL--MQLYLLLGASSESKQIYDADFPNTVVVLATVG 709
L+I LV GG I V + G+ +L LL G + + +++
Sbjct: 727 LAISHRLVTLTGGTIGVQSELGKGSTFWFELSLLPGTRRAPALLVQPELAGRRLLVVDDH 786
Query: 710 SMERMIISQWLR 721
R +I LR
Sbjct: 787 GYARQVIGSMLR 798
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED + + VA +L++ G T +G A+E +LA +
Sbjct: 928 RVLLVEDNEINREVATHLLQQAGITPDTAENGAIALE----LLAVQD------------- 970
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+LMD QMP MDG+EAT IR + ++P+VA+TA+A+ D +CL
Sbjct: 971 ------YDLVLMDMQMPVMDGFEATRHIRANPR---LASMPVVAMTANALPEDRNRCLAA 1021
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ ++ KPI +T+ R P+ G
Sbjct: 1022 GMDDHIAKPISPATFFTTLHRWLTGAPARTGG 1053
>gi|386390807|ref|ZP_10075588.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385731685|gb|EIG51883.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1093
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 154/285 (54%), Gaps = 43/285 (15%)
Query: 396 VSKEMKLRAELISHLDARRKA----EASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKS 450
V++++ L E +LDA R A + +N KSQFLA MSHE+RTPM AI+GL E+ L++
Sbjct: 558 VAEQLALGVERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRT 617
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
+LT EQ + + S+ LL +LN ILD SK+E+ +MELE +FDL L +
Sbjct: 618 --ELTEEQRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHDLLRSAIKTL 675
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ + LD+ +PR+V GDPG+V Q+ NLI N++KFT++G + +R
Sbjct: 676 GLGAREKGLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGL---- 731
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
S A P GR L FEV DTG GI +
Sbjct: 732 -SAGAAGEP------GR-----------------------LVFEVADTGIGIRPEMLGVI 761
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
F+SF Q D ST R++GGTGLGL+I R L MGG+I+ ++PG
Sbjct: 762 FDSFRQADNSTARQYGGTGLGLAISRELAGLMGGDIRAA--STPG 804
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
LR+L+AED P+ I++++ L K+G T G A+ L
Sbjct: 839 LRVLVAEDNPVNIKLMSIH-LRKLGHTAVTATSGEGALARL------------------- 878
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA---RNIPIVALTAHAMNADEK 1065
+E P FDL+LMD +MP MDG A IR S + +PI+A+TAH +
Sbjct: 879 AEEP----FDLVLMDIEMPSMDGLTAARRIRAGGSAARPVLDKAVPIIAVTAHVSPEVRQ 934
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLT 1093
C GM+AY+ KP++ + + TI RL
Sbjct: 935 ACAEAGMDAYVGKPVNLDELAGTIDRLA 962
>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis
histidine kinase 3; Short=AtHK3; AltName: Full=Protein
AUTHENTIC HIS-KINASE 3; AltName: Full=Protein ORESARA 12
gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
Length = 1036
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 21/310 (6%)
Query: 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMS 431
++ + S ILVI + I+ VS+ K+ + ++KAEA++ KSQFLA +S
Sbjct: 400 VLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVS 459
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HE+RTPM ++G+L +L D +L Q V + S AL+ L+N +LD +K+ESGK+E
Sbjct: 460 HEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLE 518
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FDL+ L++++ +FS + VE + +SD +P + GDPGR QI +NL+ NS
Sbjct: 519 LEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNS 578
Query: 552 IKFTSSGHI-----IIRGWCENLDTSKNTAEFP---------TDRKKFGRAFRTKLKQQA 597
IKFT GHI ++ E++D TA P DR++ F+ +
Sbjct: 579 IKFTEKGHIFVTVHLVDELFESIDG--ETASSPESTLSGLPVADRQRSWENFKAF---SS 633
Query: 598 NNAMNFRED-NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
N +F + L V+DTG GI +F F Q PS +R HGGTG+GLSI +
Sbjct: 634 NGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 693
Query: 657 TLVNKMGGEI 666
LV M GEI
Sbjct: 694 CLVGLMKGEI 703
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 40/192 (20%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G R+ P + + +L G +IL+ +D + VA L+K GA V G++
Sbjct: 865 LGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIK 924
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ SLL+ P E FD MD QMP+MDG+EAT IR E E
Sbjct: 925 AI---------------SLLK-PPHE------FDACFMDIQMPEMDGFEATRRIRDMEEE 962
Query: 1045 HGAR-----------------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
R ++P++A+TA + A ++CL GM+ Y++KP ++E++
Sbjct: 963 MNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYR 1022
Query: 1088 TILRLTKNMPSE 1099
+ R N PS+
Sbjct: 1023 EVSRFF-NSPSD 1033
>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 750
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 174/340 (51%), Gaps = 36/340 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AEA++ KS+F+ANMSHE+RTPM ++G+LE+L S +L EQ + + +++S+
Sbjct: 217 AKEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEML-SQTRLNREQTAALQVVRRSAEG 275
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +++ ILD+SK+ESGK+ELE FD++ EE+ +FS + +E + + P
Sbjct: 276 LLTVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAPA 335
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+V GDP R+ QI +NL+ N+IKFT G + +R E + S
Sbjct: 336 HVCGDPTRLRQILNNLLGNAIKFTHEGEVALR--VEEAEASSP----------------- 376
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
E N + L FEV DTG G+ +F F Q D STTR+ GGTGLG
Sbjct: 377 -------------EANTVRLRFEVIDTGIGMSAEHMAHLFTPFHQADASTTRRFGGTGLG 423
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ-IYDADFPNTVVVLATVGS 710
L+I + L MGG+I+V G+ L + E + + AD ++
Sbjct: 424 LAISKNLARLMGGDIEVASGLGRGSRFALVVPFTRQGEVEHPVRVADLTGRRALVVDDNE 483
Query: 711 MERMIISQWLRKKKVST-LETSEWHGLTQILRELLDPISP 749
R ++ +LR V T + GL Q LR +D P
Sbjct: 484 TNRRVVGYYLRNWGVVTQCAATAAEGLRQ-LRAAVDEGQP 522
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 24/142 (16%)
Query: 939 SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESS 998
S+ + +L G R+LL ED P+ Q VA +L ++G T V G Q +
Sbjct: 613 SAGHGAPLLRG-RVLLVEDNPINQQVALGLLRRLGLTPDVAETGAQGIA----------- 660
Query: 999 RRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
Q + ++ +D ILMD QMP MDGYE T IR E+ H R++PI+A+TA+
Sbjct: 661 ------QATSAD------YDAILMDIQMPDMDGYETTRAIRAWEAVHHRRSVPIIAMTAN 708
Query: 1059 AMNADEKKCLGVGMNAYLTKPI 1080
+ D ++CL GM+ YL KP+
Sbjct: 709 TLEGDRERCLEAGMDDYLAKPV 730
>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
platensis NIES-39]
Length = 730
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 153/269 (56%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++ R A + +KS+FLA MSHE+RTPM+ ++G++E+L LT +Q I +S+
Sbjct: 51 VETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQT-HLTPQQKDYTQTIYRSA 109
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILDLSK+E+G+ LE+ +FDLQ LE +VD+ SV+ + +E ++ L NI
Sbjct: 110 KHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLEPNI 169
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GD R+ Q+ NL+NN+IKFT SGHIIIR T R
Sbjct: 170 PRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRL---------------TPR------- 207
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
F +++ + F ++DTG GI +F+ F +T R++GGTG
Sbjct: 208 -------------FINQDQINIYFSIEDTGLGISDELQPQLFQPFSPASSATNRQYGGTG 254
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGLSI + LVN MGGEI V + G++
Sbjct: 255 LGLSICQHLVNLMGGEIGVNSQEGDGSIF 283
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 25/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P +S ++ + L+ILLAED + Q V L+++G T V DG ++ L
Sbjct: 459 PSCHLPTSEDKLKAFIPLKILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHL--- 515
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
+T +DLILMDCQMP +DGYE T IR+ ++ R I
Sbjct: 516 --------------------ETQHYDLILMDCQMPILDGYETTARIRRRQNSQ--RPPII 553
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ALTA M +D +C+ GM+ Y+TKPID + +V+ I R
Sbjct: 554 IALTASVMPSDRDRCIEAGMDDYITKPIDLQALVNLINR 592
>gi|339500954|ref|YP_004698989.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
gi|338835303|gb|AEJ20481.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
Length = 837
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 153/273 (56%), Gaps = 37/273 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L+A+ AE + KSQFLANMSHE+RTP+ IIG+ E+L+ D +L +EQ QI+ S+
Sbjct: 146 LEAKEIAERAIETKSQFLANMSHEIRTPIQTIIGMSELLQ-DTRLDHEQSEYARQIRFSA 204
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILD SK+E+GK+ LE+ +F +++ +E+ VDM S++ +E +D+ +
Sbjct: 205 DVLLSLVNDILDYSKIEAGKLALEHIDFSVEEMIEQSVDMISLEAHKKGLEIAIDIPKDA 264
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
+++GDP R QI NL+ N++KFT G II+ C
Sbjct: 265 ALHIKGDPNRFRQIIINLVKNAVKFTHEGSIIVS--CR---------------------- 300
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+TK + A+ V DTG GI +F +F QGDPSTTR+ GGTG
Sbjct: 301 KTKYH------------DSEAITITVADTGIGIAPELRPKLFTTFFQGDPSTTRRFGGTG 348
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGL+I R LV MGGEI +V G++ + +
Sbjct: 349 LGLAISRHLVQSMGGEISMVPNEGGGSIFRFII 381
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 33/150 (22%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNR 991
P + + S ++ I +L+ ED P+ Q + C ILEK+G A +S DG++A+E +
Sbjct: 553 PQAHRGTISVRREIKTDTHLLIVEDHPVNQQLFCTILEKIGFAYISTASDGIEALEKV-- 610
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI- 1050
Q P FD+I MD QMP+M+GYE T ++R+ RN
Sbjct: 611 -------------QAQP--------FDIIFMDIQMPRMNGYETTRKLRQ-------RNFT 642
Query: 1051 -PIVALTAHAMNADEKKCLGVGMNAYLTKP 1079
PI+A+TA A+ + ++C+ GMN L KP
Sbjct: 643 GPIIAVTASALADEREQCIEAGMNDVLIKP 672
Score = 40.8 bits (94), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D + + L + G S + + EAL++++ A ++ G P
Sbjct: 402 RILIVDDFSETRRILANYLFEQG--YSHIEEAASGEEALSKLVTAAAA-------GRP-- 450
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
F + L+D MPKMDG+ EI ++ +G I +V + AD K L
Sbjct: 451 ------FSVALIDMIMPKMDGWRLAAEINNDKAINGISLILMVP--QGTLGADAKMTLLR 502
Query: 1071 GMNAYLTKPI 1080
NAY+ KP+
Sbjct: 503 WFNAYIVKPV 512
>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
Length = 931
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 169/315 (53%), Gaps = 50/315 (15%)
Query: 376 SASVCILVIGCICILILTNGVSKEMKLRAELISHLDAR--------------RKAEASNN 421
+A + I+ + + I+ILT+ + + L+A + + R R AEAS+
Sbjct: 225 TAGIVIITLALLGIVILTSVLDRRYSLQAVQLELSEQRYRMIEAEAAGRERVRAAEASSQ 284
Query: 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILD 481
KS+FLANMSHE+RTP+ IIG+ + L + +LT EQ + +K S ALL ++N ILD
Sbjct: 285 AKSEFLANMSHEIRTPLNGIIGMTD-LALETELTQEQRDYLETVKLSGDALLNVINDILD 343
Query: 482 LSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVF 541
SK+E+GK+ELE +F+L +E + +++ +E + D+S +I V GDPGR+
Sbjct: 344 FSKIEAGKIELEEIDFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLR 403
Query: 542 QIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM 601
QI N+I N+IKFTS G I + K+K
Sbjct: 404 QILLNVIGNAIKFTSKGEISL-----------------------------KVKS------ 428
Query: 602 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661
+ E+ K L F + DTG GI K T+F+SF Q D STTR+ GGTGLGL+I R LV
Sbjct: 429 DLIEEKKSILHFIITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLVEM 488
Query: 662 MGGEIKVVKKNSPGT 676
MGG++ V + G+
Sbjct: 489 MGGKLWVESEVGVGS 503
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 78/136 (57%), Gaps = 24/136 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q +A ++LEK G VSV +G +A+ AL +
Sbjct: 682 LNILLAEDNAINQKLAKRLLEKRGHKVSVAENGKEALAALEK------------------ 723
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FDL+LMD QMP+MDG EAT +R+ E G + P+VA+TA AM D+++CL
Sbjct: 724 -----SSFDLVLMDVQMPEMDGLEATRTLREREKLTGF-HCPVVAMTALAMKGDQERCLE 777
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ YL+KPI S+ +
Sbjct: 778 AGMDGYLSKPISSQAL 793
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q + L G+++L+ +D + + +L + G +VV G EAL ++ AA S
Sbjct: 525 QDKALNGVKVLIVDDNRTNRRILEGLLTRWGMVPTVVSGG---EEALAKLHAAVQS---- 577
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
G P +DL+L D QMP MDG+ I++ A I+ LT+ +
Sbjct: 578 ---GVP--------YDLVLTDMQMPNMDGFGLVENIKQKADISTA---TIMMLTSGSKRG 623
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D +C +G+ AYL KP+ + ILR+ +
Sbjct: 624 DTARCAELGIAAYLLKPVRQVELRQAILRVLQ 655
>gi|376002915|ref|ZP_09780735.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
gi|375328680|emb|CCE16488.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
Length = 1242
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 163/316 (51%), Gaps = 45/316 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KSQFLANMSHE+RTPM ++G+ +L + L +Q V I+ S+
Sbjct: 571 AREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTE-LDTKQKDFVQAIRTSADH 629
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ ++ELE +FDL++ LE ++D+ + Q N +E + N+PR
Sbjct: 630 LLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPR 689
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDPGR+ Q+ NL++N IKFT +G + +R
Sbjct: 690 YLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR---------------------------- 721
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N+ + L L +EV DTG GI E VFE+F Q D STTRK GGTGLG
Sbjct: 722 -----VSRPPNYDINAPLTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLG 776
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVL------ 705
L I + L+ MGGEI + G+ L S SK + P+T+ L
Sbjct: 777 LVICKQLLEVMGGEIGLESVVDQGSTFWFTLPF---SISKTASFPNLPDTLTKLKILVVD 833
Query: 706 --ATVGSMERMIISQW 719
A+V R +I W
Sbjct: 834 ANASVRQSVRYLIQSW 849
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED P+ Q V L +G + +G Q +E LN
Sbjct: 982 LKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDR----------------- 1024
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMPK+DGY T E+RK E R+ ++ALTAHAM +D +KCL
Sbjct: 1025 ------HYDLVFMDCQMPKLDGYATTEELRKREGND--RHTTVIALTAHAMPSDRQKCLS 1076
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KPI E +
Sbjct: 1077 AGMDDYISKPITQEEL 1092
>gi|442609645|ref|ZP_21024381.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748889|emb|CCQ10443.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1387
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 39/296 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A +KAE + KS+FLANMSHE+RTPM ++G+L++LKS LT+EQ S+ +
Sbjct: 853 ALKKAEEATKLKSEFLANMSHEIRTPMNGVLGMLDLLKSS-SLTSEQAHAAEIASSSANS 911
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+ K+ELE +FDL++ + L ++ N NVE +LDL++
Sbjct: 912 LLTLINDILDFSKIEADKLELELIDFDLRQLISHLAQSMALTAQNKNVELILDLAEMEVD 971
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V DPGR+ Q+ +N+++N+IKFT G+I + T K T
Sbjct: 972 EVHSDPGRIRQVLTNILSNAIKFTEHGYIKL--------TVKLT---------------- 1007
Query: 592 KLKQQANNAMNFREDNKLALCF--EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ D+ L F +++D+G GI K T+F++F Q D STTRK+GGTG
Sbjct: 1008 ------------KSDSPLQYDFVCQIEDSGIGIPSEKLSTLFDAFSQVDASTTRKYGGTG 1055
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVL 705
LGLSI + L + G++ V + G+ ++ LLL +S+S Q+ V VL
Sbjct: 1056 LGLSITKRLCQLLKGDVSVSSQLGSGSCFEIRLLLNDASKSSQVQTTSLVTNVHVL 1111
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 23/145 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++LL ED + QIVA +IL ++G V+V +G++A++ LN +
Sbjct: 1261 QVLLVEDNKVNQIVALRILNELGVVVTVAENGVEALQILN-------------------D 1301
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D RF++ILMDCQMP MDGYEAT +IR + H + IP++A+TA+AM D++KCL
Sbjct: 1302 ARDERRFNVILMDCQMPLMDGYEATYKIRDGHAGHEYKTIPVIAMTANAMQGDKQKCLDA 1361
Query: 1071 GMNAYLTKPIDS----ERMVSTILR 1091
GM+ Y++KPID+ E++ S I R
Sbjct: 1362 GMDDYISKPIDTSLLKEKLRSWISR 1386
>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1007
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 178/347 (51%), Gaps = 40/347 (11%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+S + VIG + IL +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 335 LSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 394
Query: 435 RTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM ++G+L +L +D T Y+ Q+ AL+ L+N +LD +K+E+GK+ELE
Sbjct: 395 RTPMNGVLGMLALLLDTDLSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELE 452
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FD++ L++++ +FS + N +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 453 AVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIITNLVGNSVK 512
Query: 554 FTSSGHIIIR-GWCEN--------LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN-- 602
FT GHI ++ EN +DT N + + F+T +A + N
Sbjct: 513 FTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLSGCEAADDQNSW 572
Query: 603 ----------FR--------------EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
FR ED L +C V+DTG GI VF F Q D
Sbjct: 573 DVFKHFSDEDFRFDASINVMTNNEASEDVGLMVC--VEDTGIGIPLKAQGRVFMPFVQAD 630
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
ST+R++GGTG+GLSI + LV MGG+I + + G+ + G
Sbjct: 631 SSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSFTAVFG 677
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 39/181 (21%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N SS + +L G RIL+ +D + + VA L+K GA G +A++
Sbjct: 840 KRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALK- 898
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES----- 1043
LLQ P T +D MD QMP+MDG+EAT IR+ ES
Sbjct: 899 --------------LLQ--PPHT-----YDACFMDIQMPEMDGFEATRRIRQMESQANEQ 937
Query: 1044 --------EHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
E AR +IPI+A+TA ++A +CL GM+ Y++KP + E + + R
Sbjct: 938 MNGESMVEEGTARKVQWHIPILAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVAR 997
Query: 1092 L 1092
Sbjct: 998 F 998
>gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586]
gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586]
Length = 927
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 151/266 (56%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q LEE+V++ + +E L + IP
Sbjct: 338 NLLTIINDILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V GDP R+ Q+ +NL+ NSIKFT G N+D S R+ R
Sbjct: 398 RGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVSVEM-----------RSLR 437
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D+ + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 438 ---------------DDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV+ MGGEI + + G+
Sbjct: 483 GLVITQKLVSHMGGEISLTSRLHQGS 508
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+ILMD QMP MDG A EI++ + G R+ P++A+TAHAM + + L GM+ Y
Sbjct: 708 QFDIILMDIQMPHMDGVTACKEIKQLK---GYRDTPVIAVTAHAMAGERDRLLKAGMDDY 764
Query: 1076 LTKPIDSERMVSTILR 1091
LTKPI+ + ++R
Sbjct: 765 LTKPIEEYILQQVLVR 780
>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
Length = 1006
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 178/347 (51%), Gaps = 40/347 (11%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+S + VIG + IL +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 335 LSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 394
Query: 435 RTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM ++G+L +L +D T Y+ Q+ AL+ L+N +LD +K+E+GK+ELE
Sbjct: 395 RTPMNGVLGMLALLLDTDLSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELE 452
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FD++ L++++ +FS + N +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 453 AVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIITNLVGNSVK 512
Query: 554 FTSSGHIIIR-GWCEN--------LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN-- 602
FT GHI ++ EN +DT N + + F+T +A + N
Sbjct: 513 FTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLSGCEAADDQNSW 572
Query: 603 ----------FR--------------EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
FR ED L +C V+DTG GI VF F Q D
Sbjct: 573 DVFKHFSDEDFRFDASINVMTNNEASEDVGLMVC--VEDTGIGIPLKAQGRVFMPFVQAD 630
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
ST+R++GGTG+GLSI + LV MGG+I + + G+ + G
Sbjct: 631 SSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSFTAVFG 677
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 39/181 (21%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N SS + +L G RIL+ +D + + VA L+K GA G +A++
Sbjct: 839 KRSQGKGMPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALK- 897
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES----- 1043
LLQ P T +D MD QMP+MDG+EAT IR+ ES
Sbjct: 898 --------------LLQ--PPHT-----YDACFMDIQMPEMDGFEATRRIRQMESQANEQ 936
Query: 1044 --------EHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
E AR +IPI+A+TA ++A +CL GM+ Y++KP + E + + R
Sbjct: 937 MNGESMVEEGTARKVQWHIPILAMTADVIHATHDECLKSGMDGYVSKPFEEENLYQAVAR 996
Query: 1092 L 1092
Sbjct: 997 F 997
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica
Group]
Length = 1186
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 38/329 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I+IS++V I+V+ I+ T +E + + L R AEA++ KSQFLA +SH
Sbjct: 549 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKGR--AEAADVAKSQFLATVSH 606
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D +L Q V ++S +L+ L+N +LDL+K+ESGK+EL
Sbjct: 607 EIRTPMNGVLGMLQMLM-DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIEL 665
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FD++ L+ +V +FS + +E + +SD +P + GDP R QI +NL+ NS+
Sbjct: 666 EAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSM 725
Query: 553 KFTSSGHIIIRGWC----------------ENLDT---SKNTAEFPT-------DRKKFG 586
KFT GHI IR EN++ SKNT + T + +K
Sbjct: 726 KFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTL 785
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+FR + + +++A+ + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 786 ESFR--MFKDSSDAI-----DSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYG 838
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTG+GLSI + LV MGGEI V K PG
Sbjct: 839 GTGIGLSITKRLVELMGGEIGFVSK--PG 865
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G IL+ +D + +IVA L+K GA V+ V G +A+ L
Sbjct: 1050 RSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRL-------------- 1095
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
+ P +FD MD QMP+MDG+EAT +R ES+
Sbjct: 1096 ------QPPH--KFDACFMDVQMPEMDGFEATRLVRSVESK 1128
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 180/349 (51%), Gaps = 35/349 (10%)
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
TL ++ + VIG + IL + +K+ + + + +AEA++ KSQFLA
Sbjct: 80 TLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIAKSQFLAT 139
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM I+G+L +L D +L++ Q + AL+ L+N +LD +K+E+GK
Sbjct: 140 VSHEIRTPMNGILGMLALLL-DTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGK 198
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ELE FDL+ L++++ +FS + + VE + +SD +P V GDPGR Q+ +NL+
Sbjct: 199 LELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVG 258
Query: 550 NSIKFTSSGHIIIR--------------------GWCENLDTSKNTAEFPT-------DR 582
NS+KFT GHI ++ G E+ S N +F T D
Sbjct: 259 NSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSED-GASHNKHQFETLSGFEAADN 317
Query: 583 KKFGRAFRTKLKQ--QANNAMNFREDNKLA----LCFEVDDTGCGIDQSKWETVFESFEQ 636
+ F+ + Q N + N N+++ + V+DTG GI S VF F Q
Sbjct: 318 QNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTGIGIPLSAQGRVFMRFMQ 377
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
D ST+R +GGTG+GL I + LV MGG+I V K G+ + G
Sbjct: 378 ADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSFTAVFG 426
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 39/190 (20%)
Query: 925 IGSSRRDQPCSS-SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
+GS ++ Q +N S+ K +L G +IL+ +D + + VA L+K GA V V G
Sbjct: 585 LGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGK 644
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEAT-------- 1035
A+ +LLQ S FD MD QMP+MDG+EAT
Sbjct: 645 AAL---------------ALLQLPHS-------FDACFMDIQMPEMDGFEATRRIRMMES 682
Query: 1036 ----IEIRKSESEHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
+ IR+S + AR ++PI+A+TA ++A +CL GM+ Y++KP + E +
Sbjct: 683 KENEVLIRESNGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQ 742
Query: 1088 TILRLTKNMP 1097
+ + P
Sbjct: 743 AVAKFFNTKP 752
>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
Length = 1274
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 175/318 (55%), Gaps = 38/318 (11%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS+FLANMSHE+RTPM I+G EIL + L ++Q +V I++ LL L+N I
Sbjct: 541 NQAKSEFLANMSHEIRTPMNGILGFAEILLQTN-LNSQQEESVRIIQQCGENLLDLINDI 599
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+ESGKM LE T F L+K + E V++ + VE + + ++P +GDP R
Sbjct: 600 LDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGDPTR 659
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ +NL++N+ KFT GH+ K+ Q ++
Sbjct: 660 IRQVLNNLLSNAAKFTHEGHV-----------------------------EVKVNGQKDH 690
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++ E + L F V DTG GI + K + +FESF Q D STTRK+GGTGLGL+I R+L+
Sbjct: 691 SV---ETDSFTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLI 747
Query: 660 NKMGGEIKVVKKNSPGTLMQ-----LYLLLGASSESKQIYDADFPNTVVVLATVGSMERM 714
N MGG+I V + + G+ L ++L ++ S++ + + VV++A +
Sbjct: 748 NLMGGQITVESEVNRGSKFSFSIPGLPVVLVENNYSEENDKENIGSGVVLVAEDEWTTKQ 807
Query: 715 IISQWLRKKKVSTLETSE 732
+I+ +L K + + T +
Sbjct: 808 LIANYLEKAGYTVVATDQ 825
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 29/160 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+D+ S S++ N+ +I +LL ED Q + +L G V++ +G QA+E L
Sbjct: 1036 KDRSISGSDAPDNKNKIT---NVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEML 1092
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
N+ FD++LMD QMP MDGYE T IR E ++
Sbjct: 1093 NQ-----------------------SNFDIVLMDMQMPVMDGYETTRVIRSDER---YKS 1126
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+PI+ALTAHAM D +KCL G + YL KP+ + ++ TI
Sbjct: 1127 LPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTI 1166
>gi|449127546|ref|ZP_21763819.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
gi|448944279|gb|EMB25160.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
Length = 676
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 162/293 (55%), Gaps = 45/293 (15%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+ + ++K+ KL+ E + + A++ AE +N+ +S FLAN+SHE+RTP+ IIG++E++
Sbjct: 113 FFVTIDDITKQ-KLKEEFL--IIAKQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI 169
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
K D L EQ Q+ S+ LL L+N +LD SK+ESG M +E T F+L +E+ VD
Sbjct: 170 K-DTNLDEEQSEYTRQVNFSAEVLLALVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVD 228
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI------II 562
+ S++ +E V+D+SD IP + GDP R+ Q+ N + N++KFT G++ ++
Sbjct: 229 LISMEAHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTEKGYVSVSVKVVL 288
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
G N+DT K + ++ FEV DTG G+
Sbjct: 289 EGNPNNIDTEK----------------------------------RFSILFEVADTGIGV 314
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ + +F SF QG S RK+GGTGLGL+I + ++ M G+I +K N P
Sbjct: 315 NAEQKSKIFNSFYQGSASINRKYGGTGLGLAISKNIITMMRGKIG-IKDNIPA 366
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK TVS DG A++ E+++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKTNCTVSTANDGENAIK--------EAAKEE------- 602
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FD+I MD QMP ++GYEAT +R E G PI+A TA + + + K C
Sbjct: 603 --------FDIIFMDIQMPGINGYEATQILR----EKGYSK-PIIACTAGSQDNERKLCE 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|333923713|ref|YP_004497293.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333749274|gb|AEF94381.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1274
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 175/318 (55%), Gaps = 38/318 (11%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS+FLANMSHE+RTPM I+G EIL + L ++Q +V I++ LL L+N I
Sbjct: 541 NQAKSEFLANMSHEIRTPMNGILGFAEILLQTN-LNSQQEESVRIIQQCGENLLDLINDI 599
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+ESGKM LE T F L+K + E V++ + VE + + ++P +GDP R
Sbjct: 600 LDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGDPTR 659
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ +NL++N+ KFT GH+ K+ Q ++
Sbjct: 660 IRQVLNNLLSNAAKFTHEGHV-----------------------------EVKVNGQKDH 690
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++ E + L F V DTG GI + K + +FESF Q D STTRK+GGTGLGL+I R+L+
Sbjct: 691 SV---ETDSFTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLI 747
Query: 660 NKMGGEIKVVKKNSPGTLMQ-----LYLLLGASSESKQIYDADFPNTVVVLATVGSMERM 714
N MGG+I V + + G+ L ++L ++ S++ + + VV++A +
Sbjct: 748 NLMGGQITVESEVNRGSKFSFSIPGLPVVLVENNYSEENDKENIGSGVVLVAEDEWTTKQ 807
Query: 715 IISQWLRKKKVSTLETSE 732
+I+ +L K + + T +
Sbjct: 808 LIANYLEKAGYTVVATDQ 825
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 29/160 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
+D+ S S++ N+ +I +LL ED Q + +L G V++ +G QA+E L
Sbjct: 1036 KDRSISGSDAPDNKNKIT---NVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEML 1092
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
N+ FD++LMD QMP MDGYE T IR E ++
Sbjct: 1093 NQ-----------------------SNFDIVLMDMQMPVMDGYETTRVIRSDER---YKS 1126
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+PI+ALTAHAM D +KCL G + YL KP+ + ++ TI
Sbjct: 1127 LPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTI 1166
>gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1048
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AEA+N KS FLANMSHE+RTPM A+IGL I +LT +Q + ++ S+++
Sbjct: 425 ARQAAEAANRTKSDFLANMSHEIRTPMNAVIGLSHICLQT-ELTPKQRDYLEKVHNSAHS 483
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +LN ILDLSK+ESG++E+E F+L++ L+ L + + + ++ LDL +P
Sbjct: 484 LLGILNDILDLSKIESGRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPV 543
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+RGDP R+ Q+ +NL+ N++KFT G I
Sbjct: 544 NLRGDPLRLGQVLTNLVGNAVKFTEEGEI------------------------------- 572
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
A+ + ++ L F V D G G+ Q + +F+ F Q D STTRK+GGTGLG
Sbjct: 573 ----AVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTTRKYGGTGLG 628
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
LSI R LV MGGEI+V + G+
Sbjct: 629 LSISRQLVELMGGEIRVESEAGKGS 653
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 26/143 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G +LLAED + ++VA ++L +VG ++ V DG QA+E L R
Sbjct: 684 LSGAHLLLAEDDEVNRLVARELLARVGIRLTTVEDGAQALERLAR--------------- 728
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD +L+D QMP MDG A +IR+ + +++PI+A+TA+AM D K+
Sbjct: 729 --------EEFDGVLLDLQMPVMDGITAAGKIRE---QAKFKDLPIIAMTANAMTEDLKR 777
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
C GMN ++ KPI+ ++MV+T+
Sbjct: 778 CFQAGMNDHIGKPIEPDKMVATL 800
>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
Length = 1262
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 165/315 (52%), Gaps = 41/315 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKS 468
L A+ +AE +N KS FLANMSHE+RTPM IIGL ++ LK+D LT EQ + ++ S
Sbjct: 540 LTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTD--LTAEQQDYLTHLESS 597
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
S ALL +++ ILD SK+E+G +++E +F L K L L + ++ +E +LD+ +
Sbjct: 598 SQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDKS 657
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P + GDP R+ Q+ NL+ N+IKFT G I+I+ NL T+K
Sbjct: 658 VPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNL-TAK--------------- 701
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
++ LCF + D+G GI +F++F Q D STTRK GGT
Sbjct: 702 -------------------QITLCFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGT 742
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-ASSESKQIYD--ADFPNTVVVL 705
GLGL+I + LV MGG I V + G+ L G S E ++I+ D ++
Sbjct: 743 GLGLAICKRLVEMMGGNIWVESQLEQGSSFSFTALFGRQSKEYERIFKLPGDLHGIKALI 802
Query: 706 ATVGSMERMIISQWL 720
R I+ Q L
Sbjct: 803 VDDNKTSRTILQQEL 817
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ ED + Q V K +E G V + +G +AV +
Sbjct: 947 RILVVEDNSINQQVIQKTIESEGLIVEIANNGKEAVMMV--------------------- 985
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D FD +LMD QMP+MDG EAT IR+ +++H N+PI+A+TAHAM+ +K L V
Sbjct: 986 --DNIHFDAVLMDMQMPEMDGMEATQLIRQ-KTQHD--NLPIIAMTAHAMSGVREKLLAV 1040
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMN Y+TKP D + + S +
Sbjct: 1041 GMNDYITKPFDVDDLFSVL 1059
>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 21/310 (6%)
Query: 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMS 431
++ + S ILVI + I+ VS+ K+ + ++KAEA++ KSQFLA +S
Sbjct: 432 VLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVS 491
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HE+RTPM ++G+L +L D +L Q V + S AL+ L+N +LD +K+ESGK+E
Sbjct: 492 HEIRTPMNGVLGMLHMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLE 550
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FDL+ L++++ +FS + VE + +SD +P + GDPGR QI +NL+ NS
Sbjct: 551 LEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNS 610
Query: 552 IKFTSSGHI-----IIRGWCENLDTSKNTAEFP---------TDRKKFGRAFRTKLKQQA 597
IKFT GHI ++ E++D TA P DR++ F+ +
Sbjct: 611 IKFTEKGHIFVTVHLVDELFESIDG--ETASSPESTLSGLPVADRQRSWENFKAF---SS 665
Query: 598 NNAMNFRED-NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
N +F + L V+DTG GI +F F Q PS +R HGGTG+GLSI +
Sbjct: 666 NGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 725
Query: 657 TLVNKMGGEI 666
LV M GEI
Sbjct: 726 CLVGLMKGEI 735
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 39/168 (23%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G R+ P + + +L G +IL+ +D + VA L+K GA V G++
Sbjct: 897 LGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIK 956
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ SLL+ P E FD MD QMP+MDG+EAT IR E E
Sbjct: 957 AI---------------SLLK-PPHE------FDACFMDIQMPEMDGFEATRRIRDMEEE 994
Query: 1045 HGAR-----------------NIPIVALTAHAMNADEKKCLGVGMNAY 1075
R ++P++A+TA + A ++CL GM+ Y
Sbjct: 995 MNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGY 1042
>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
MO6-24/O]
gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
MO6-24/O]
Length = 928
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 154/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++ + + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NL+ NSIKFT G N+D S
Sbjct: 398 EGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ Q+ ++++ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRAQSGDSLD--------LQFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGEI + + G+
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGS 508
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDLI MD QMPKMDG A I+++E N P++A+TAHAM+ + + L GM+ Y
Sbjct: 709 QFDLIFMDIQMPKMDGVTACKLIKQTELN---ANTPVIAVTAHAMSGERDRLLKAGMDDY 765
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 766 LTKPIE-EHILQQVL 779
>gi|406035762|ref|ZP_11043126.1| Sensor protein gacS [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 936
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 150/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L LTNEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLTNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 388 AFYYAENIPQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDEDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMHGQI 497
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 18/149 (12%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + + +
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDMIQQRIEQK----------- 709
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-ARNIPIVALTAHAMNADEKK 1066
P FDL+ MD QMP M G + T IR ES +PI+ALTAHA+ +++K
Sbjct: 710 ------LPPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDIGMQLPIIALTAHALADEKQK 763
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
L VGMN Y+TKPI E+++ + TKN
Sbjct: 764 LLKVGMNDYVTKPIQMEQIIQILTHWTKN 792
>gi|406889705|gb|EKD35823.1| Hpt sensor hybrid histidine kinase, partial [uncultured bacterium]
Length = 735
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 179/318 (56%), Gaps = 44/318 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE S KSQFLA+MSHE+RTPM AI+G ++ L++D+ ++ + + +I +SY
Sbjct: 178 AKAAAERSAITKSQFLAHMSHEIRTPMNAILGFSDLALQTDN--PSDHFDYLGKINTASY 235
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILDLSK+E+GK+ +EN +FDL++ LE+L + S++C +E +++ P
Sbjct: 236 SLLGIINAILDLSKIEAGKLTVENVDFDLRELLEKLATLISLRCEESGIEFYFNIAPETP 295
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+RGD R+ Q+ +NLI N+ KFT SG+I+ L S + GR
Sbjct: 296 FALRGDALRLSQVLTNLITNAFKFTESGYIV-------LHISPDP----------GRVIG 338
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ +++ L F V DTG GI + + E +F+ F Q D S TRK GGTGL
Sbjct: 339 S---------------DRVILRFSVQDTGTGITKEQEENLFQPFTQADSSITRKFGGTGL 383
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGS 710
GL+I ++LV M G I + + ++PG+ + K+ +D DF + ++A
Sbjct: 384 GLTICKSLVAIMNGSIWLERNDTPGSTFCFTVPFA----RKEGHDRDFYSAPGMVAG--- 436
Query: 711 MERMIISQWLRKKKVSTL 728
+RMI+ R +K S L
Sbjct: 437 -KRMIVMSE-RPQKASEL 452
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 85/151 (56%), Gaps = 23/151 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+LLAED + Q + L+ G ++V +G +AVE L R +G
Sbjct: 584 LLGNRVLLAEDNKINQQITLGFLDFAGLATTIVQNGAEAVELLER-------------EG 630
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ FDL+LMD QMP MDGY AT IRK + G IPI+ALTAHAM +++K
Sbjct: 631 T--------SFDLVLMDIQMPVMDGYSATEAIRKMAAPTG--KIPIIALTAHAMQEEKQK 680
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
CL GMN Y+TKPI+ E++ +T+ R P
Sbjct: 681 CLDRGMNDYITKPINPEQLFATLGRYLPCRP 711
>gi|350534229|ref|ZP_08913170.1| histidine kinase [Vibrio rotiferianus DAT722]
Length = 639
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 163/293 (55%), Gaps = 40/293 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAE +N KS+FLA MSHE+RTPM IIG+ +L SD +L +Q V I SS +
Sbjct: 233 ARDKAEIANRKKSEFLATMSHEIRTPMNGIIGVASLL-SDTKLDEQQKDLVSIINSSSNS 291
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ +++ ILD SK+E+GK+ELE+T + L L+E+ + +V+ ++ V D+ +P
Sbjct: 292 LMVIIDDILDFSKIEAGKIELESTVYSLLDLLQEVGRLHTVKAQQKGLQLVCDIDPKLPL 351
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD GR+ Q+ SNL++N++KFT GH+ L S+ +
Sbjct: 352 EVEGDVGRLKQVLSNLLSNAVKFTERGHV-------KLMVSQVS---------------- 388
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
RE+ ++CF V D+G GI + + VFE F+Q D STTRK+GGTGLG
Sbjct: 389 ------------REEGVASVCFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGLG 436
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE----SKQIYDADFPN 700
L+I +LV MGG I++ + G+ + + L S+ S I +FPN
Sbjct: 437 LAICSSLVEVMGGNIRLTSEPGLGSCFEFTIPLNIVSDKLLASNTINVLEFPN 489
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 25/134 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ EDT + Q V +LEK+G V V G +A++ L E
Sbjct: 509 VLVVEDTEVNQKVVRIMLEKLGMQVRVAEHGEEALK-----LCQEH-------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+FDLILMDCQMP MDG+ AT IRK + +PIVAL+A+ + D+++C +G
Sbjct: 550 ----QFDLILMDCQMPVMDGFVATENIRKMGV--WGKQVPIVALSANVIKEDQRRCFAIG 603
Query: 1072 MNAYLTKPIDSERM 1085
MN ++ KP+ ER+
Sbjct: 604 MNEFVAKPVTKERL 617
>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
Length = 996
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 198/397 (49%), Gaps = 51/397 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ ++ +V VI + IL + +K+ + D + +AEA++ KSQFLA +SH
Sbjct: 325 VALTTAVLFFVILILVGYILYEAGNHIVKVEDDFHEMQDLKVRAEAADVAKSQFLATVSH 384
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM I+G++ +L D +L++ Q + AL+ L+N +LD +K+E+GK+EL
Sbjct: 385 EIRTPMNGILGMMALLL-DTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLEL 443
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ L++++ +FS + + ++E + +SD +P + GDPGR QI +NL+ NS+
Sbjct: 444 EAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKVPDILMGDPGRFRQIITNLVGNSV 503
Query: 553 KFTSSGHIIIR--------------------------------------GWCENLDTSKN 574
KFT GHI ++ CE +D +
Sbjct: 504 KFTEQGHIFVKVHLEDNINPVMNGKHETILNGESDEVFHLSGDCHFKTLSGCEAVDEQNS 563
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
F R F K A + + E KL +C V+DTG GI S +T+F F
Sbjct: 564 WENFKHLIANEERYFDCSSKMAATSESS--EQVKLRVC--VEDTGTGIPFSAQDTIFMPF 619
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-----ASSE 689
Q D ST+R +GGTG+GLSI + LV MGG+I + G+ G + S+
Sbjct: 620 VQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVGSTFSFTAAFGMFKKNSVSD 679
Query: 690 SKQIYDADFPNT---VVVLATVGSMERMIISQWLRKK 723
K++ D P++ + V+ G R ++++L K+
Sbjct: 680 MKKLNLEDLPSSFRGLKVIVVDGKPVRAAVTRYLLKR 716
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 37/173 (21%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N SS + +L G +IL+ +D + + VA L+K GA V V G A+E L
Sbjct: 840 NGSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEML-------- 891
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------SEHGARN 1049
+ P FD MD QMP+MDG+EAT +IR E E G N
Sbjct: 892 ------------QLPHC--FDACFMDIQMPEMDGFEATSKIRMMERKANEQVNGELGEGN 937
Query: 1050 -------IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
+PI+A+TA ++A KCL GM+ Y++KP + +++ + + K+
Sbjct: 938 TRKSEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEQKLYQEVAKFFKS 990
>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 928
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 154/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++ + + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NL+ NSIKFT G N+D S
Sbjct: 398 EGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ Q+ ++++ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRAQSGDSLD--------LQFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGEI + + G+
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGS 508
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDLI MD QMPKMDG A I+++E N P++A+TAHAM+ + + L GM+ Y
Sbjct: 709 QFDLIFMDIQMPKMDGVTACKLIKQTELN---ANTPVIAVTAHAMSGERDRLLKAGMDDY 765
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 766 LTKPIE-EHILQQVL 779
>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
Length = 1023
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 18/349 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 449 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 507
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGRV QI +NLI NSI
Sbjct: 508 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRVRQIITNLIGNSI 567
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFP-TDRKKFGRAFRTKLKQQANNA 600
KFT GHI + C ++T +NT + +P +R++ + R ++ ++
Sbjct: 568 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRRSWESIRLFNRELHSSE 627
Query: 601 MNFR--EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+F + ++L V+DTG GI VF F Q PS R HGGTG+GLSI + L
Sbjct: 628 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 687
Query: 659 VNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFP--NTVVV 704
V M GEI K G T +L+ A + I ++F N +VV
Sbjct: 688 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVV 736
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 875 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK--------------- 919
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 920 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 972
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 973 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 1018
>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
response regulator hybrid [Rhodopirellula baltica SH 1]
gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
kinase / response regulator hybrid [Rhodopirellula
baltica SH 1]
Length = 871
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 170/315 (53%), Gaps = 27/315 (8%)
Query: 390 LILTNGVSKEMK--LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+I T G+S+++ R+E H +A R A+A+N KS+FLANMSHE+RTPM A+IG+ ++
Sbjct: 268 IIGTFGISRDITDLKRSEAALH-EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADL 326
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L +Q V I++SS LLRL+N ILD SK+E+ ++ELE+ F L K +E +
Sbjct: 327 L-SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTL 385
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
FS + S +E D+S +P + GDPGRV Q+ +NLI N+IKFT G
Sbjct: 386 RSFSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG-------GV 438
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ E DR L + + D+ + L V D+G GI ++
Sbjct: 439 RVRVEVLRREERADR---------DLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQ 489
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+ V F Q D STTR+ GGTGLGLSI R LV MGGE+ + + GT L +
Sbjct: 490 DAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKM--- 546
Query: 688 SESKQIYDADFPNTV 702
+ A PN V
Sbjct: 547 ----PVCPASMPNEV 557
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 933 PCSSSNSSSNQKRILEG--------LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
P S N +++ L G L +L+AED Q V +L +G S+ DG
Sbjct: 550 PASMPNEVDDEEEDLGGPARQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDG-- 607
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
R L SE+ +D++LMD MP MDG EAT IR+ E
Sbjct: 608 ----------------RETLTKWRSES-----YDVVLMDMHMPVMDGLEATRAIRQEEW- 645
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
R+ PIVALTA AM+ D C GM++YLTKPI S ++ + + +P G+
Sbjct: 646 GTERHTPIVALTAAAMSEDAAACREAGMDSYLTKPIHSRKLRDALAPYQRELPPADDGS 704
>gi|425741583|ref|ZP_18859728.1| GHKL domain protein [Acinetobacter baumannii WC-487]
gi|425492148|gb|EKU58418.1| GHKL domain protein [Acinetobacter baumannii WC-487]
Length = 935
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
Length = 1004
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 237/493 (48%), Gaps = 78/493 (15%)
Query: 251 MKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQS 310
M+EL+E +G++ + + L + L N + N+ +S +P+I G Q+ S
Sbjct: 240 MQELIEATAGYVG-GAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDS 298
Query: 311 EYGSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKT 370
+ + H G D F R ++ + ++A +
Sbjct: 299 DLS-------LFHESKLDFG------DPF---------------RRHQMICRYHQKAPMS 330
Query: 371 LIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANM 430
L +A + VIG + IL +K+ + + + +AEA++ KSQFLA +
Sbjct: 331 WTALTTAFL-FFVIGLLVGYILYGAGIHIVKVEDDFHEMEELKVRAEAADVAKSQFLATV 389
Query: 431 SHELRTPMAAIIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESG 488
SHE+RTPM I+G+L +L D +L++ Q Y+ QI AL+ L+N +LD +K+++G
Sbjct: 390 SHEIRTPMNGILGMLALLL-DTELSSTQRDYAQTAQI--CGKALIALINEVLDRAKIDAG 446
Query: 489 KMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLI 548
K+ELE F L+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+
Sbjct: 447 KLELEAVPFVLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEIVMGDPGRFRQIVTNLV 506
Query: 549 NNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT------DRKKF---GRAFRT-------- 591
NS+KFT GHI ++ + A+ T DR F GR F+T
Sbjct: 507 GNSVKFTERGHIFVKVHLAEHTMAMVNAKAETCLNGGSDRSLFLSGGREFKTLSGCEVAD 566
Query: 592 ---------------KLKQQAN-NAMNFREDNK---LALCFEVDDTGCGIDQSKWETVFE 632
+L+ +A+ N MN E ++ L +C V+DTG GI + VF
Sbjct: 567 ERNSWDIFKHLVADEELRSEASRNMMNTNEASEHVTLMVC--VEDTGIGIPLCAQDRVFM 624
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-----AS 687
F Q D ST+R +GGTG+GLSI + LV MGG+I + + G+ + G A
Sbjct: 625 PFMQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFGRCKKNAF 684
Query: 688 SESKQIYDADFPN 700
S+ K+ D P+
Sbjct: 685 SDVKKPISEDLPS 697
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 38/185 (20%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N SS + +L G +IL+ +D + + VA L+K GA V G A+
Sbjct: 838 KRQQEKDMLNGSSFLQSLLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAAL-- 895
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
+LLQ P FD MD QMP+MDG+EAT +IR ES+ +
Sbjct: 896 -------------ALLQ-----LPHN--FDACFMDIQMPEMDGFEATRQIRVMESKENEQ 935
Query: 1049 ----------------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
++PI+A+TA ++A +CL GM+ Y++KP + E + + +
Sbjct: 936 INGGATDEGAIRKREWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKF 995
Query: 1093 TKNMP 1097
K+ P
Sbjct: 996 FKSNP 1000
>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
Length = 935
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
CMCP6]
Length = 928
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 154/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++ + + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITLKIDPRIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NL+ NSIKFT G N+D S
Sbjct: 398 EGVVGDPLRIQQVLTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ Q+ ++++ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRAQSGDSID--------LQFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGEI + + G+
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGS 508
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDLI MD QMPKMDG A I+++E N P++A+TAHAM+ + + L GM+ Y
Sbjct: 709 QFDLIFMDIQMPKMDGVTACKLIKQTELN---ANTPVIAVTAHAMSGERDRLLKAGMDDY 765
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 766 LTKPIE-EHILQQVL 779
>gi|373952037|ref|ZP_09611997.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
gi|373888637|gb|EHQ24534.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
Length = 822
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 155/291 (53%), Gaps = 37/291 (12%)
Query: 404 AELISHLDARRK-AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTV 462
+EL LD +RK A+ N KS FLANMSHE+RTPM +IG+ +L S LT+EQ V
Sbjct: 287 SELNIELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLIST-SLTDEQQDYV 345
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
I+ S LL L+N ILD SK+ESGKMELE F L +EE D+ +V+ ++ +
Sbjct: 346 ETIRISGETLLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLDLL 405
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582
+ ++P + GD R+ QI NL++N IKFT G I+I
Sbjct: 406 YLIDADVPSEIIGDVTRLRQILVNLVSNGIKFTEKGEILI-------------------- 445
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
+L ++A + L F V D+G GI Q K+ +F+SF Q D STT
Sbjct: 446 -------SIELLEKAGSIY--------TLQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTT 490
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
RKHGGTGLGL+I + LV M G I+ K G+ + + AS++ KQ
Sbjct: 491 RKHGGTGLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTIKVEASAQLKQF 541
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 24/132 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
+ IL+AED + Q + + LEK+G +V +GL+ + A+ +
Sbjct: 695 AINILIAEDNDINQKLVRRALEKLGLLSDLVFNGLEVLHAVEQ----------------- 737
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+DLILMD QMP+MDGYEAT +RK R + I+A+TA+A+ D+++ +
Sbjct: 738 ------KNYDLILMDVQMPEMDGYEATRLVRKKYESASMRPV-IIAMTANALTGDKERAM 790
Query: 1069 GVGMNAYLTKPI 1080
GM+ Y++KP
Sbjct: 791 SEGMDDYISKPF 802
>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 174/310 (56%), Gaps = 15/310 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I V++ K+ + ++ +++AEA++ KSQFLA +SH
Sbjct: 397 VAITTSIGILVIALLVGYIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSH 456
Query: 433 ELRTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM ++G+L +L D +T ++Y Q +S AL+ L+N +LD +K+E GK+E
Sbjct: 457 EIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQ--ESGKALVSLINEVLDQAKIEFGKLE 514
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FD++ L++++ +FS + VE + +SD++P + GDPGR QI +NL+ NS
Sbjct: 515 LEAVLFDIRAILDDVLSLFSEKSQGKRVELAVYVSDHVPELLIGDPGRFRQIITNLMGNS 574
Query: 552 IKFTSSGHI-----IIRGWCENLDTSKNTAEFPT-------DRKKFGRAFRTKLKQQANN 599
IKFT GHI ++ +++ K + T D ++ F+ ++
Sbjct: 575 IKFTDKGHIFVTIHLVEEVVRSIEVDKESNSENTLSGSPVADSRRSWEGFKAFSQEGPLG 634
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + ++ + L V+DTG GI +F F Q S +RKHGGTG+GLSI + LV
Sbjct: 635 SFSSPSNDLVNLIVSVEDTGEGIPLESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLV 694
Query: 660 NKMGGEIKVV 669
M GEI V
Sbjct: 695 GLMNGEIGFV 704
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 34/164 (20%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G +IL+ +D + + VA L+K GA V V G A+ +L
Sbjct: 888 RHLLRGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLK------------- 934
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR------------NIP 1051
P +FD MD QMP+MDG+EAT IR+ E ++P
Sbjct: 935 ----PPH-----QFDACFMDIQMPEMDGFEATKRIREMEDSVNREVSMDDFENITNWHVP 985
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
I+A+TA + A ++CL GM+ Y++KP ++E++ + R ++
Sbjct: 986 ILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQS 1029
>gi|445439648|ref|ZP_21441773.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
gi|444751880|gb|ELW76578.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
Length = 935
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|379011612|ref|YP_005269424.1| multi-sensor hybrid histidine kinase [Acetobacterium woodii DSM
1030]
gi|375302401|gb|AFA48535.1| multi-sensor hybrid histidine kinase [Acetobacterium woodii DSM
1030]
Length = 1028
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 220/454 (48%), Gaps = 80/454 (17%)
Query: 396 VSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
+S ++ LR ++ L +A+ AE + KS FLANMSHE+RTPM AI+G+ +++ D L
Sbjct: 261 ISTDISLRKQMEEALFEAKMVAEEAAKSKSDFLANMSHEIRTPMNAILGMGYLIEKTD-L 319
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
+ +Q + +IK+S LL ++N ILD SK+E+GK+ +E F L + L+ L + S +C
Sbjct: 320 SEKQKDYIDKIKQSGQHLLGIINDILDFSKIEAGKLNIEAINFKLDEVLDNLTNCSSEKC 379
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+E V D+ +P + GDP R+ QI N +NN+IKFT SG II++ E T
Sbjct: 380 LEKGLELVFDIGPEVPNELCGDPLRIGQILINYVNNAIKFTDSGEIIVKIRKEQELT--- 436
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
N+ L FEV DTG G+ + +F+SF
Sbjct: 437 --------------------------------NEFILKFEVHDTGIGLTNDQRSKLFQSF 464
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
QGD STTRK+GGTGLGL+I + L + MGGE+ V G+ + + S+QI
Sbjct: 465 HQGDTSTTRKYGGTGLGLAISKNLADLMGGEVGVESIIGKGS---NFWFTTRFTTSQQIE 521
Query: 695 DADFPNTVVVLATVGSM-------ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPI 747
++ P + +++ V ++ R+I+S L+ V ET +++
Sbjct: 522 ES--PVSYKIMSNVRTLVVDDNHQARLILSSMLKSMNVRVDETGSGKNAIEMI------- 572
Query: 748 SPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFH 807
+SS+ + PY ++ ID+ + L+ E+LN ++ H
Sbjct: 573 --LSSDQGNDPYD--------------------IIFIDMQMPHLNGIQTIERLNQRNL-H 609
Query: 808 RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL 841
+ + V + + E R G +V+ KP+
Sbjct: 610 KTPKYVMVTGY-GREDVFFEAKRVGIEVVLVKPV 642
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 27/145 (18%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
S + NQ + + +ILL ED + Q VA +ILE+ G V V +G +A+ M++A+
Sbjct: 672 STQNKNQPELFKS-KILLVEDNEINQQVAIEILEEGGFAVDVADNGQKAI----AMVSAD 726
Query: 997 SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1056
+ +DL+LMD QMP +DG EAT +IR + +++ I+A+T
Sbjct: 727 N-------------------YDLVLMDMQMPILDGLEATKQIRMNRQ---FKDLVIIAMT 764
Query: 1057 AHAMNADEKKCLGVGMNAYLTKPID 1081
A+AM D ++C+ GMN YL KPID
Sbjct: 765 ANAMTGDRERCIAGGMNDYLPKPID 789
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 180/326 (55%), Gaps = 15/326 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S+ LVI + I V + K+ + + ++ +++AEA++ KSQFLA +SH
Sbjct: 385 LAITSSLGTLVIALLTGYIFHATVHRIAKVEDDYQNMMELKKRAEAADIAKSQFLATVSH 444
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D T +Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 445 EIRTPMNGVLGMLQMLMDTDLDTTQQ-DFVRTAQASGKALVSLINEVLDQAKIESGKLEL 503
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL++NSI
Sbjct: 504 EAVPFDLRIVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPGRMRQIITNLMSNSI 563
Query: 553 KFTSSGHIIIR-------GWCENLDT----SKNTAEFP-TDRKKFGRAFRTKLKQQANNA 600
KFT GHI + C + T + + +P +R++ +FR ++
Sbjct: 564 KFTERGHIYLTVHVVEEVMGCLEVKTGTHYTNTLSGYPVANRRRSWESFRLFDMDLHSSE 623
Query: 601 MNFRE--DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
M F + + L V+DTG GI +F + Q PS R HGGTG+GLSI + L
Sbjct: 624 MPFTPVTPDTIRLIISVEDTGAGIPFEAQYRIFTPYMQVGPSIARIHGGTGIGLSISKCL 683
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLL 684
V+ M GEI V K G+ +L
Sbjct: 684 VHLMKGEIGFVSKPHVGSTFSFTAVL 709
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 871 LLHKKQIIVVDDNAVNLKVAAGALKKYGAVVTCADSGKKAIAYL---------------- 914
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
SP FD MD QMP+MDG++AT EIRK ES+ +
Sbjct: 915 -SPPHI-----FDACFMDIQMPEMDGFQATKEIRKMESKLNEKIESGDVPPECVNVRRWR 968
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ + R +N
Sbjct: 969 TPILAMTADVIQATYEECLKCEMDGYVSKPFEGEQLYREVTRFFQN 1014
>gi|451947164|ref|YP_007467759.1| signal transduction histidine kinase regulating C4-dicarboxylate
transport system [Desulfocapsa sulfexigens DSM 10523]
gi|451906512|gb|AGF78106.1| signal transduction histidine kinase regulating C4-dicarboxylate
transport system [Desulfocapsa sulfexigens DSM 10523]
Length = 749
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 222/476 (46%), Gaps = 72/476 (15%)
Query: 201 GVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSG 260
G S + AV TN L + P++ A VGV S + Q+ EL E
Sbjct: 151 GRESRYAAVGVTTNERGLYFSAPIFGTAG------APVGVVVIKSGIQQIQVELSESSFQ 204
Query: 261 HIYLTSQEGYLLATST-------NAPLLTNSSTGPNLVKAVD-SDNPVIQMGAQWLQSEY 312
H L S G + S +A L + + LVK+ +DNP+ + + ++
Sbjct: 205 HAALISDSGIVFVVSETDKDWLYHASLPLSPAQKATLVKSRQFADNPLTDLPISFDENTT 264
Query: 313 GSKVPPGHVIHVQNAKL-GHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTL 371
P + IH L G K ++ K+ P++ +I+IP + +Y
Sbjct: 265 SIDSVP-YTIHTTPVALNGWKLVSLEK---QQKKFPVILLILIPGSLL-------SY-LF 312
Query: 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMS 431
I I A+ ++ + S + +L L A+ AEA+N KS FLAN+S
Sbjct: 313 ISKIRANNNEKLLKEEMEEEILQRRSVQEQL-------LIAKEAAEAANIAKSDFLANIS 365
Query: 432 HELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 490
HE+RTPM I+G+ ++L S LT EQ + + S+ LL L+N ILD SK+E+GKM
Sbjct: 366 HEIRTPMNGIMGMTTQVLNS--ILTEEQRKQLEIVDSSAQRLLGLINSILDFSKIEAGKM 423
Query: 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINN 550
E+E F L ++L+E+ M +V+ V L+ D+IP + GDP R+ QIF NL+NN
Sbjct: 424 EIEEVPFVLDEKLDEVFSMMAVKAEKQKVILSLESRDSIPPVLIGDPDRLLQIFINLVNN 483
Query: 551 SIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610
++KFT G + I C D+ + +
Sbjct: 484 ALKFTEQGSVKILVQCNKSDS-----------------------------------DSVL 508
Query: 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
L F V DTG GI K +F+SF Q D STTRK+GGTGLGLSI LV +GGEI
Sbjct: 509 LQFGVQDTGIGIPLEKQGVIFDSFAQADSSTTRKYGGTGLGLSISSQLVKLLGGEI 564
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 24/161 (14%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ IL ILL ED P+ I+A +LEK ++ +GL+AV+ + M A
Sbjct: 607 RSILSNREILLVEDEPINMILAKAVLEKEHIHITTAQNGLEAVD--HYMSRA-------- 656
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
FD ILMD QMP+MDGY+ T IR E E+G +IPI+A+TAHA D
Sbjct: 657 -------------FDCILMDIQMPEMDGYQTTAVIRSHEQEYGG-HIPIIAMTAHATQGD 702
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
+KCL GM+ Y+TKP+ +E + + I + +N S A T
Sbjct: 703 RQKCLAAGMDDYVTKPLHTEDIFNAIEKQLQNSLSIAADAT 743
>gi|421789462|ref|ZP_16225720.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
gi|410398593|gb|EKP50804.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
Length = 935
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
Length = 1261
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 226/475 (47%), Gaps = 78/475 (16%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A AE ++ KSQFLANMSHE+RTPM AI+GL +L D L Q + V +I+ +S
Sbjct: 532 AMEAAEEASQAKSQFLANMSHEIRTPMNAIMGLAHLLAQSD-LKESQQNYVAKIEGASKT 590
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLR++N +LD SK+E+GK+E+EN +F+L K LE + +++S+ + ++ D + +P
Sbjct: 591 LLRIINDVLDFSKIEAGKLEIENIKFNLDKVLENVANLYSISAAEKGIDLNFDTGEGVPD 650
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
+ GDP R+ Q+ SNLI N+IKFT+ G ++ ++ EN D K
Sbjct: 651 VLIGDPLRLEQVLSNLITNAIKFTNRGEVNVSVKVLGENNDEVK---------------- 694
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V DTG GI + +F +F Q D S TRK+GGTG
Sbjct: 695 ---------------------LSFTVSDTGIGITKEHIGRLFRAFTQADGSMTRKYGGTG 733
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVG 709
LGL+I + LV M GEI V GT + + + K+ +++P+
Sbjct: 734 LGLTISKQLVELMNGEISVESVYGEGTSFHFIVHFHKALDLKKPSCSNYPD--------- 784
Query: 710 SMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEM 769
L+ KK ++ ++ LT IL +L S + + P+ + E L E
Sbjct: 785 ----------LQGKKALIIDHNKT-SLT-ILERMLRSFS-LEVTALNDPFEALERLHREC 831
Query: 770 TNIKALIDPVYVVVIDIALLDLSS-DLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTEL 828
++ +VID L +L + ++ + + DI K +F + +T ++
Sbjct: 832 FDL---------LVIDFNLPELPGIEFYKRIIANPDIALPKTIFVSAIGRETHYH---QV 879
Query: 829 SREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIAN 883
+ G + KP+ + M + A+ G L I +E N + RG +A+
Sbjct: 880 KQLGVRNFLVKPINQSLMFDAIMNALNGTALHQGEVIH---DEANSRKHRGELAD 931
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ ED + Q+VA +LE+ G VS+ +G +A++ ++
Sbjct: 933 RVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAIKYVH-------------------- 972
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+F +LMD QMP MDGY+AT +RK+ + + +PI+A+TA+A+ D ++ +
Sbjct: 973 ---ANKFAAVLMDVQMPVMDGYKATEILRKT---YSSSELPIIAMTANALRGDRERSIAA 1026
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMN Y++KPID R+ T+
Sbjct: 1027 GMNDYISKPIDPNRLFDTL 1045
>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1480
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 44/300 (14%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
+SK MK + ELI A+ +A+ + KS+FLA+MSHE+RTPM ++G+L +L ++ QLT
Sbjct: 674 ISKRMKTQNELIL---AKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLL-NNTQLT 729
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+ Q V + S+ +LL L+N ILD SK+++GK+ELEN +F+L+ L E + + Q
Sbjct: 730 DYQKRRVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQ 789
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
N ++E VLDL V GDP R+ Q +NL+ N+IKFTS G ++I
Sbjct: 790 NKSLELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKGEVLIEAGL--------- 840
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF--EVDDTGCGIDQSKWETVFES 633
D+ CF + DTG GI K ++F+S
Sbjct: 841 -----------------------------RDSGDEWCFWCVITDTGIGIAADKISSLFDS 871
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
F Q D STTRK+GGTGLGL+IV+ + MGG++ + + GT ++ + LG S S+ +
Sbjct: 872 FSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITSEVGKGTRVEFTIYLGKSINSQLV 931
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 20/136 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RILL ED + Q+VA +LE +V V +G+QA+ L L AE
Sbjct: 1100 VRILLVEDNYVNQLVATGVLEDFKVSVDVADNGVQAIHML---LNAED------------ 1144
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
P + L+LMDCQMP+MDGYEA+ IR+ E+ + IPI+A+TA+AM D++KCL
Sbjct: 1145 -----PPYSLVLMDCQMPEMDGYEASRAIRRGEAGDRYKQIPIIAMTANAMMGDKEKCLD 1199
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ YL KPI+ E++
Sbjct: 1200 SGMDDYLAKPIEPEKI 1215
>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 935
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|417554678|ref|ZP_12205747.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|417562565|ref|ZP_12213444.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|421201292|ref|ZP_15658451.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|421454193|ref|ZP_15903542.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|421634178|ref|ZP_16074797.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|421805706|ref|ZP_16241582.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
gi|395525147|gb|EJG13236.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|395563324|gb|EJG24977.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|400212960|gb|EJO43917.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|400391095|gb|EJP58142.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|408704896|gb|EKL50252.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|410407968|gb|EKP59943.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
Length = 935
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|451977538|ref|ZP_21927618.1| hypothetical protein C408_4230 [Vibrio alginolyticus E0666]
gi|451929622|gb|EMD77359.1| hypothetical protein C408_4230 [Vibrio alginolyticus E0666]
Length = 828
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 163/287 (56%), Gaps = 37/287 (12%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + + I H A+ A ++N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 302 NRVVEEKQRQTDEILH--AKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 358
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L++ Q V I SS LL LLN ILDLSK+ESG++EL E D+++ + + + +F +
Sbjct: 359 LSSHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSK 418
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E ++L++NIP V D R+ Q+ +NL++N++KFT SGHI +D S
Sbjct: 419 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHI-------RVDVSY 471
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ E P E+ + L F+V+DTG GI+Q K T+FE
Sbjct: 472 D--ELP-------------------------ENERGTLMFKVEDTGIGIEQDKLTTIFEP 504
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT +
Sbjct: 505 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIATSTKGVGTCFEF 551
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+ +
Sbjct: 706 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALEAITK------------------- 746
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD ILMDC MP MDG AT EIR+ E + G I+ALTA + D C
Sbjct: 747 ---GEEFDAILMDCMMPVMDGLTATKEIRRWEKKAGREKTTIIALTASVLEEDIHNCFAA 803
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 804 GMDAYLPKPYKSNQL 818
>gi|421808063|ref|ZP_16243920.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
gi|410416242|gb|EKP68017.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|381197114|ref|ZP_09904455.1| GacS-like sensor kinase protein [Acinetobacter lwoffii WJ10621]
Length = 937
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 174/335 (51%), Gaps = 40/335 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +++ KS FLAN+SHELRTP+ +I G + +L D L N+Q
Sbjct: 268 LEVQNITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+EL+ FDL++ + +++DM S + +++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELDTATFDLEEAIFDVMDMLSPLAAQKHIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+P++V GD R QI +NLI+N+IKFT G II+R E D
Sbjct: 388 AFYYADNVPKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I ++ +P G+ + + E + +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNEEDEYVEHP 532
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 731
F + VV I+ +L V +E+S
Sbjct: 533 QFSDMQVVSYLAHPATANILRHYLEDYAVEHIESS 567
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL IL +D IV +L ++ + G QA+E L AE
Sbjct: 663 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQQALEILQE--RAEH---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
D+ FDL+ MD QMP M G + T IR ES + +PI+ALTAHA+ +++K
Sbjct: 711 -----DSKAFDLVFMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAHALADEKQK 765
Query: 1067 CLGVGMNAYLTKP 1079
L VGM+ Y+TKP
Sbjct: 766 LLQVGMDDYVTKP 778
>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1959
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 158/295 (53%), Gaps = 40/295 (13%)
Query: 382 LVIGCICILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAA 440
+V G ++ G+ + + +L L AR +AEA+N KS FLANMSHE+RTPM A
Sbjct: 1189 VVQGAFVLVSDITGIKQAEQRLTQLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNA 1248
Query: 441 IIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500
IIGL +L D T +Q + Q+ +++ LL ++N ILDLSK+ESGK+ELE T+F +
Sbjct: 1249 IIGLTHLLLRDSTDTVQQ-ERLGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVD 1307
Query: 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI 560
L + + +E VLD S +P ++RGDP R+ Q NL++N++KFT G +
Sbjct: 1308 TLLSRACALVGERARAKGLELVLD-SHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQGSV 1366
Query: 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC 620
++R + D + L + FEVDDTG
Sbjct: 1367 VVRAEIVHEDP-----------------------------------DGLTVRFEVDDTGI 1391
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
G+ + +F +FEQ D STTR+ GGTGLGL I R L MGGE+ V ++PG
Sbjct: 1392 GMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGV--SSAPG 1444
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 26/142 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G R+LLAED + + VA ++L+ G V + DG +A++ R
Sbjct: 1625 GARVLLAEDNAVNREVAVELLQAAGMQVDLAVDGQEAIDMCQRTA--------------- 1669
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+ L+LMD QMP++DG EAT IR ++ ++PI+A+TA+A D CL
Sbjct: 1670 --------YALVLMDMQMPQVDGLEATRRIR---ADARLADLPILAMTANAFGEDRAACL 1718
Query: 1069 GVGMNAYLTKPIDSERMVSTIL 1090
GMN ++ KP+D + + S +L
Sbjct: 1719 AAGMNDHIAKPVDPQVLYSHLL 1740
>gi|440714431|ref|ZP_20895010.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
gi|436440627|gb|ELP33931.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
Length = 848
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 170/315 (53%), Gaps = 27/315 (8%)
Query: 390 LILTNGVSKEMK--LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+I T G+S+++ R+E H +A R A+A+N KS+FLANMSHE+RTPM A+IG+ ++
Sbjct: 245 IIGTFGISRDITDLKRSEAALH-EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADL 303
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L +Q V I++SS LLRL+N ILD SK+E+ ++ELE+ F L K +E +
Sbjct: 304 L-SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTL 362
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
FS + S +E D+S +P + GDPGRV Q+ +NLI N+IKFT G
Sbjct: 363 RSFSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG-------GV 415
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ E DR L + + D+ + L V D+G GI ++
Sbjct: 416 RVRVEVLRREERADR---------DLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQ 466
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+ V F Q D STTR+ GGTGLGLSI R LV MGGE+ + + GT L +
Sbjct: 467 DAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKM--- 523
Query: 688 SESKQIYDADFPNTV 702
+ A PN V
Sbjct: 524 ----PVCPASMPNEV 534
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 933 PCSSSNSSSNQKRILEG--------LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
P S N +++ L G L +L+AED Q V +L +G S+ DG
Sbjct: 527 PASMPNEVDDEEEDLGGPARQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDG-- 584
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
R L SE+ +D++LMD MP MDG EAT IR+ E
Sbjct: 585 ----------------RETLTKWRSES-----YDVVLMDMHMPVMDGLEATRAIRQEEW- 622
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
R+ PIVALTA AM+ D C GM++YLTKPI S ++ + + +P G+
Sbjct: 623 GTERHTPIVALTAAAMSEDAAACREAGMDSYLTKPIHSRKLRDALTPYQRELPPADDGS 681
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 164/297 (55%), Gaps = 39/297 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
++++ K EL L A+ +AEA+N KSQFLANMSHE+RTPM I G LE+L++ +L+
Sbjct: 303 ITEQRKAEKEL---LKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQTT-ELS 358
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
EQ + + K +S LL ++N ILD SK+E+ K+ +E+ +F+L+ +E+ V + S +
Sbjct: 359 LEQEEFIREAKSASEILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAV 418
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E + + D +P V GDP R+ QI +NLI+N++KFT SG I
Sbjct: 419 EKGLEIYVMIKDGVPEEVIGDPSRIRQILNNLISNAVKFTESGDI--------------- 463
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
+ +++ N+ N L FEV DTG GI + +F+SF
Sbjct: 464 ------------SVSVDYEEKENDMAN--------LYFEVKDTGIGIRKEDIHKLFQSFN 503
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
Q D STTRK+GGTGLGL+I LV M GE+ V + G+ + + L + S +
Sbjct: 504 QADASTTRKYGGTGLGLAISSELVKMMDGEMNVESEFGKGSTFKFNVNLKIAKRSSE 560
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 27/145 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA-LNRMLAAESSRRRSLLQGSPS 1009
+ILL ED + + + IL+ T + +G +AV+A L R
Sbjct: 721 KILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAVKAVLER------------------ 762
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++ MDCQMP MDGYE+T IR+ E E ++ I+A+TA+AM D +KC+
Sbjct: 763 ------DYDVVFMDCQMPVMDGYESTARIRELEGEK--KHTTIIAMTANAMEGDSEKCIQ 814
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTK 1094
GM+ Y++KPI+ E M S I TK
Sbjct: 815 AGMDYYISKPINFELMFSMIESNTK 839
>gi|421675842|ref|ZP_16115761.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|421692525|ref|ZP_16132176.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|445451410|ref|ZP_21444763.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
gi|404559811|gb|EKA65062.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|410381359|gb|EKP33925.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|444755081|gb|ELW79674.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
Length = 785
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 161/314 (51%), Gaps = 44/314 (14%)
Query: 385 GCICI-LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIG 443
G +C+ L +T E LR A+ AEA+N KSQFLANMSHE+RTPM ++G
Sbjct: 376 GIVCVALDITERKQAEEALRI-------AKENAEAANRAKSQFLANMSHEIRTPMNGVLG 428
Query: 444 LLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
+L++L D +L Q S+ LL ++N ILD SK+E+G+ +L +F L++ +
Sbjct: 429 MLDLLM-DSRLDENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETV 487
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
E+ DMF V+ + N+ + + D++P VRGD R+ Q+ NL+ N++KFT +G I +
Sbjct: 488 REVADMFWVKAQDKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTENGQIFL- 546
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGID 623
+ + TAE T+L+ FEV DTG GI
Sbjct: 547 ----GVSLMETTAE------------NTQLR------------------FEVRDTGTGIP 572
Query: 624 QSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL 683
+F++F Q D S R+H GTGLGL+I R LV MGG I V + G+L L
Sbjct: 573 LDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWFTLC 632
Query: 684 LGASSESKQIYDAD 697
L + + AD
Sbjct: 633 LRHAQSIPALLPAD 646
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 78/131 (59%), Gaps = 25/131 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LLAED P+ Q + +LE +G V VV +G QAVEA+ S R
Sbjct: 664 VLLAEDNPVNQELGRLVLESLGCKVDVVGNGRQAVEAV-------SDRE----------- 705
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG--ARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMP++DGYEAT IR+ E+E G R+IP++ALTAHAM+ D + CL
Sbjct: 706 -----YDLVFMDCQMPEVDGYEATRSIRQREAETGEQTRHIPVIALTAHAMDGDRETCLS 760
Query: 1070 VGMNAYLTKPI 1080
GM+ Y +KP
Sbjct: 761 AGMDDYASKPF 771
>gi|423206478|ref|ZP_17193034.1| PAS domain S-box protein [Aeromonas veronii AMC34]
gi|404622030|gb|EKB18895.1| PAS domain S-box protein [Aeromonas veronii AMC34]
Length = 1340
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 151/266 (56%), Gaps = 38/266 (14%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L+ARR AE + KS+FLANMSHE+RTPM AIIG+ L L+ EQ++ V +I +++
Sbjct: 601 LEARRIAEDATRTKSEFLANMSHEIRTPMNAIIGMAH-LALQTSLSPEQHNYVSKIDRAA 659
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL +LN ILD SK+E+GK++LE +F L + E L D+ + + + + DL+ ++
Sbjct: 660 NNLLGILNDILDFSKMEAGKLQLEQVDFRLNEVFEWLADLTAFRAREKGLALLFDLAGDL 719
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P +RGDP R+ QI NL +N+IKFT G +I+R
Sbjct: 720 PDRLRGDPLRLGQILLNLTSNAIKFTEQGEVIVR-------------------------- 753
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L + N D + L V D+G G+ + + +F SFEQ D STTRK+GGTG
Sbjct: 754 ---LARSDEN------DGAIWLQGCVQDSGIGMTAEQCQRLFHSFEQADSSTTRKYGGTG 804
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPG 675
LGL+I LV M GEI+V +++PG
Sbjct: 805 LGLAITNNLVQLMDGEIRV--ESTPG 828
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+LL +D + + VA +L K T+ DG QA+ +LA +
Sbjct: 1004 LAGARLLLVDDNDMNREVALALLGKEQITLVCACDGAQALS----LLAQDRG-------- 1051
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD ILMDCQMP MDGY AT IR + G IPI+A+TA M D++K
Sbjct: 1052 ----------FDGILMDCQMPVMDGYTATRLIRADPALSG---IPIIAMTASTMATDKEK 1098
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
L GMNA++ KP++ +++T+
Sbjct: 1099 ALAAGMNAHIAKPLNMSLLLATL 1121
>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|384130575|ref|YP_005513187.1| barA [Acinetobacter baumannii 1656-2]
gi|384141859|ref|YP_005524569.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236167|ref|YP_005797506.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|387125187|ref|YP_006291069.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|407931503|ref|YP_006847146.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|416146676|ref|ZP_11601339.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|417545223|ref|ZP_12196309.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|417548913|ref|ZP_12199994.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|417564245|ref|ZP_12215119.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|417570614|ref|ZP_12221471.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|417573478|ref|ZP_12224332.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|417577140|ref|ZP_12227985.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|417871210|ref|ZP_12516153.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|417875880|ref|ZP_12520680.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|417879626|ref|ZP_12524183.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|417882286|ref|ZP_12526588.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|421201789|ref|ZP_15658944.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|421535285|ref|ZP_15981547.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|421622209|ref|ZP_16063116.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|421625735|ref|ZP_16066581.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|421630525|ref|ZP_16071228.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|421642970|ref|ZP_16083481.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|421645639|ref|ZP_16086103.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|421651950|ref|ZP_16092315.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|421657789|ref|ZP_16098037.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|421666336|ref|ZP_16106428.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|421671063|ref|ZP_16111045.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|421677416|ref|ZP_16117308.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|421688310|ref|ZP_16128010.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|421701253|ref|ZP_16140759.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|421702304|ref|ZP_16141788.1| barA [Acinetobacter baumannii ZWS1122]
gi|421706043|ref|ZP_16145463.1| barA [Acinetobacter baumannii ZWS1219]
gi|421791460|ref|ZP_16227636.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|421796182|ref|ZP_16232249.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|421798701|ref|ZP_16234717.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|424053672|ref|ZP_17791203.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|424061138|ref|ZP_17798628.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|424064609|ref|ZP_17802093.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|425747233|ref|ZP_18865243.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425753772|ref|ZP_18871640.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|445400251|ref|ZP_21429901.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|445459605|ref|ZP_21447628.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|445465096|ref|ZP_21449874.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|445481384|ref|ZP_21455828.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|333366057|gb|EGK48071.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|342224496|gb|EGT89526.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|342226031|gb|EGT91007.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|342227724|gb|EGT92637.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|342238027|gb|EGU02469.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|347592352|gb|AEP05073.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879679|gb|AFI96774.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|395551062|gb|EJG17071.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|395556001|gb|EJG22002.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|395570361|gb|EJG31023.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|398328674|gb|EJN44797.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|400209046|gb|EJO40016.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|400383111|gb|EJP41789.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|400389212|gb|EJP52284.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|404561053|gb|EKA66289.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|404567855|gb|EKA72970.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|404666820|gb|EKB34750.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|404667158|gb|EKB35079.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|404672692|gb|EKB40496.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|407194476|gb|EKE65616.1| barA [Acinetobacter baumannii ZWS1122]
gi|407194678|gb|EKE65815.1| barA [Acinetobacter baumannii ZWS1219]
gi|407900084|gb|AFU36915.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|408507071|gb|EKK08773.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|408511536|gb|EKK13184.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|408518267|gb|EKK19793.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|408696265|gb|EKL41807.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|408697378|gb|EKL42892.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|408697829|gb|EKL43335.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|408711578|gb|EKL56783.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|409986838|gb|EKO43029.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|410383360|gb|EKP35893.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|410388261|gb|EKP40700.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|410393172|gb|EKP45526.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|410399697|gb|EKP51881.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|410402965|gb|EKP55068.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|410412142|gb|EKP64002.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|425494121|gb|EKU60336.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425497666|gb|EKU63771.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|444770176|gb|ELW94333.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|444773799|gb|ELW97890.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|444779228|gb|ELX03222.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|444783633|gb|ELX07492.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|452955833|gb|EME61230.1| signal transduction histidine kinase [Acinetobacter baumannii
MSP4-16]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1431
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 160/277 (57%), Gaps = 42/277 (15%)
Query: 400 MKLRA-ELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
+KL A EL+S A+ AEA+N KS+FLANMSHE+RTP+ ++G+ E+L S L+ +Q
Sbjct: 747 LKLTAQELVS---AKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTS-LSAKQ 802
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
S + +++S ALL ++N ILD SK+E+GK+ELE EF L++ +EE V++F+ N
Sbjct: 803 QSLLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKK 862
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++P ++ GD R+ QI NLI N+IKFT+ G + +
Sbjct: 863 LELTYFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTV---------------- 906
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
AF A+ + + L L V DTG GI + +F +F Q D
Sbjct: 907 ---------AF----------ALAEQHADTLTLACRVRDTGIGIPDAAQAQLFTAFTQAD 947
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
STTR+ GGTGLGL+IV+ LV MGGE+ +V ++PG
Sbjct: 948 GSTTRRFGGTGLGLAIVKQLVQLMGGEVGLV--SAPG 982
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 26/180 (14%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G S P S +++ + R+ RILLAED P+ Q VA +LE +G +++ P+G
Sbjct: 1135 LGGSAGPVPHSPEFAATPRPRV--DARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRA 1192
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
AVEA T RFDLILMDCQMP+MDG+ AT IR+ E+
Sbjct: 1193 AVEAAT-----------------------TGRFDLILMDCQMPEMDGFTATAAIRRQEAT 1229
Query: 1045 H-GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
R++PI+ALTA+AM D +CL GM+ YLTKP ++ + + + P+E + T
Sbjct: 1230 ATDRRHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQWLTPRPAEESET 1289
>gi|445486226|ref|ZP_21457284.1| GHKL domain protein [Acinetobacter baumannii AA-014]
gi|444769711|gb|ELW93879.1| GHKL domain protein [Acinetobacter baumannii AA-014]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|403673172|ref|ZP_10935475.1| barA [Acinetobacter sp. NCTC 10304]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|417304364|ref|ZP_12091387.1| sensory box histidine kinase/response regulator [Rhodopirellula
baltica WH47]
gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
baltica WH47]
Length = 843
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 170/315 (53%), Gaps = 27/315 (8%)
Query: 390 LILTNGVSKEMK--LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+I T G+S+++ R+E H +A R A+A+N KS+FLANMSHE+RTPM A+IG+ ++
Sbjct: 240 IIGTFGISRDITDLKRSEAALH-EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADL 298
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L +Q V I++SS LLRL+N ILD SK+E+ ++ELE+ F L K +E +
Sbjct: 299 L-SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTL 357
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
FS + S +E D+S +P + GDPGRV Q+ +NLI N+IKFT G
Sbjct: 358 RSFSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG-------GV 410
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ E DR L + + D+ + L V D+G GI ++
Sbjct: 411 RVRVEVLRREERADR---------DLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQ 461
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+ V F Q D STTR+ GGTGLGLSI R LV MGGE+ + + GT L +
Sbjct: 462 DAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKM--- 518
Query: 688 SESKQIYDADFPNTV 702
+ A PN V
Sbjct: 519 ----PVCPASMPNEV 529
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 82/179 (45%), Gaps = 32/179 (17%)
Query: 933 PCSSSNSSSNQKRILEG--------LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
P S N +++ L G L +L+AED Q V +L +G S+ DG
Sbjct: 522 PASMPNEVDDEEEDLGGPARQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDG-- 579
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
R L SE+ +D++LMD MP MDG EAT IR+ E
Sbjct: 580 ----------------RETLTKWRSES-----YDVVLMDMHMPVMDGLEATRAIRQEEW- 617
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
R+ PIVALTA AM+ D C GM++YLTKPI S ++ + + +P G+
Sbjct: 618 GTERHTPIVALTAAAMSEDAAACREAGMDSYLTKPIHSRKLRDALAPYQRELPPADDGS 676
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 15/317 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I+ S+ ILVI + I V++ ++ + ++ +++AEA++ KSQFLA +SH
Sbjct: 397 VAITTSIGILVIALLVGHIFHATVNRIAEVEDDYRKEMELKKQAEAADVAKSQFLATVSH 456
Query: 433 ELRTPMAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM ++G+L +L D +T ++Y Q +S AL+ L+N +LD +K+E GK+E
Sbjct: 457 EIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQ--ESGKALVSLINEVLDQAKIEFGKLE 514
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FD++ L++++ +FS + VE + +SD++P + GDPGR QI +NL+ NS
Sbjct: 515 LEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDHVPELLIGDPGRFRQIITNLMGNS 574
Query: 552 IKFTSSGHI-----IIRGWCENLDTSKNTAEFPT-------DRKKFGRAFRTKLKQQANN 599
IKFT GHI ++ +++ K + T D ++ F+ ++
Sbjct: 575 IKFTDKGHIFVTIHLVEEVVRSIEVDKESNSENTLSGSPVADSRRSWEGFKAFSQEGPLG 634
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + + + L V+DTG GI ++ F Q PS +RKHGGTG+GLSI + LV
Sbjct: 635 SFSSPSSDLVNLIVSVEDTGEGIPLESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLV 694
Query: 660 NKMGGEIKVVKKNSPGT 676
M GEI V G+
Sbjct: 695 GLMNGEIGFVSIPKTGS 711
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 34/164 (20%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
+ +L G +IL+ +D + + VA L+K GA V V G A+ +L
Sbjct: 888 RHLLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLK------------- 934
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR------------NIP 1051
P +FD MD QMP+MDG+EAT +R+ E ++P
Sbjct: 935 ----PPH-----QFDACFMDIQMPEMDGFEATKRVREMEDSVNREVSMDDFENITNWHVP 985
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
I+A+TA ++A ++CL GM+ Y++KP ++E++ + R ++
Sbjct: 986 ILAMTADVIHATHEECLKWGMDGYVSKPFEAEQLYREVSRFFQS 1029
>gi|421656356|ref|ZP_16096664.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
gi|408505745|gb|EKK07464.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|421662107|ref|ZP_16102275.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
gi|421694004|ref|ZP_16133636.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|404569843|gb|EKA74928.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|408714910|gb|EKL60040.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
Length = 935
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
Length = 937
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 174/335 (51%), Gaps = 40/335 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +++ KS FLAN+SHELRTP+ +I G + +L D L N+Q
Sbjct: 268 LEVQNITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+EL+ FDL++ + +++DM S + +++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+P++V GD R QI +NLI+N+IKFT G II+R E D
Sbjct: 388 AFYYADNVPKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I ++ +P G+ + + E + +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNEEDEYVEHP 532
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 731
F + VV I+ +L V +E+S
Sbjct: 533 QFSDMQVVSYLAHPATANILRHYLEDYAVEHIESS 567
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 18/133 (13%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL IL +D IV +L ++ T + G QA+E L AE
Sbjct: 663 QGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQQALEILQE--RAEH---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
D+ FDL+ MD QMP M G + T IR ES + +PI+ALTAHA+ +++K
Sbjct: 711 -----DSKAFDLVFMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAHALADEKQK 765
Query: 1067 CLGVGMNAYLTKP 1079
L VGM+ Y+TKP
Sbjct: 766 LLQVGMDDYVTKP 778
>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1153
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 164/310 (52%), Gaps = 51/310 (16%)
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEA--SNNYKSQFLANMSHELRTPMAAIIGLL 445
CIL+ T E K R + R K A +N KS F+ANMSHE+RTPM AIIGL
Sbjct: 360 CILVDTT----ERKFR-----EIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLS 410
Query: 446 EI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
+ L++D LT+ Q + +I+ S+ +LLR++N ILDLSK+E+G++ +E EFDL+ L
Sbjct: 411 SLALRTD--LTSRQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALN 468
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII-- 562
L M SV+ ++ + D+ ++P + GDP R+ Q+ NL +N++KFT G +II
Sbjct: 469 NLAKMVSVKADEKGLDVIFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVIIKV 528
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
R E D +T L F V DTG G+
Sbjct: 529 RREREAADVQGST-----------------------------------LRFSVIDTGIGM 553
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
+ +F+SF Q D S TRKHGGTGLGL+I + +V+ MGGEI V + G+
Sbjct: 554 RAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGEISVSSEFGVGSTFTFTA 613
Query: 683 LLGASSESKQ 692
G S++K+
Sbjct: 614 HFGLHSQAKK 623
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 21/145 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G IL+ ED + Q + ++LE G +VSV G A++ ++ +
Sbjct: 780 IRGAHILVVEDNEINQQIVVELLELEGFSVSVAEHGKAALDIIHAL-------------- 825
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P+E + D ILMD QM +MDGY AT EIRK + IPI+A+TAHAM ++ K
Sbjct: 826 EPNE-----KIDAILMDVQMSEMDGYTATQEIRKMPAPLCL--IPIIAMTAHAMPSERDK 878
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ ++ KPID + M T+++
Sbjct: 879 CLASGMDDFVPKPIDQKGMFQTLVK 903
Score = 40.8 bits (94), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ +D + V + LE G TV G +AV + + A E
Sbjct: 636 VLVVDDNRAAREVMKENLEGFGCTVRTAAAGAEAVSKVEKADAMEP-------------- 681
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
F L+LMD MP MDG EA I+ S A ++ +TA+ ++ G
Sbjct: 682 -----FHLVLMDWNMPGMDGLEAARMIKS--SRQIAHPPAVMIVTAYGNEELIQQSNQAG 734
Query: 1072 MNAYLTKPIDSERMVSTILRLTKNMPS 1098
+ +L KP+ + ++IL + + S
Sbjct: 735 NDGFLVKPVTPSVLYNSILTVMQGAHS 761
>gi|262198726|ref|YP_003269935.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
gi|262082073|gb|ACY18042.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
Length = 885
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 151/270 (55%), Gaps = 12/270 (4%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R A+A+N+ KS+FLA+MSHE+RTP+ IIG+ +L D +L +EQ I S AL
Sbjct: 307 RESADAANHAKSEFLASMSHEIRTPLNGIIGMSTLLL-DTELDDEQRELAKTIDDSGAAL 365
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L L+N ILD SK+ESGK+E E+ FDL + + D + + +E + D+ +P+
Sbjct: 366 LGLINNILDFSKIESGKLEFEHRRFDLHECVASACDAVATSAAAKGLELICDIKPQVPQV 425
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF-GRAFRT 591
V GD GRV Q+ NL+ N++KFT+SG +++R +L ++ ++ P D + G R
Sbjct: 426 VIGDAGRVRQLVLNLLGNAVKFTASGEVLVR---LSLAPARASS-IPGDGGRLAGDGARA 481
Query: 592 KLKQQANNAMN---FREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH 645
+ + + R+ ALC V DTG GI +F SF Q D ST RK+
Sbjct: 482 GSESDVRSDLGSGVHRDPGAGALCRLRLSVRDTGLGIHPDDISRLFRSFRQLDSSTARKY 541
Query: 646 GGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GG+GLGL+I R L M G+I V PG
Sbjct: 542 GGSGLGLAISRRLARLMDGDISVESAGVPG 571
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D+I MD QMP MDG EAT E+R+ + E G + I+ALTA+A D +CL GM+ YL
Sbjct: 796 YDIIFMDMQMPLMDGLEATAELRRRQPE-GTQRPRIIALTANATADDRARCLAAGMDHYL 854
Query: 1077 TKPID 1081
KPI+
Sbjct: 855 AKPIE 859
>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
Length = 996
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 164/315 (52%), Gaps = 46/315 (14%)
Query: 384 IGCICILILTNG---------VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I C IL L +G + + +AE + L AR AEA++ KS FLANMSHE+
Sbjct: 318 IYCKTILTLRDGSVAALLGTIIDITARKQAE-VEILQARDVAEAASQAKSDFLANMSHEI 376
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM +IG+ E L D LT EQ + +K S+ +LL ++N ILD SK+E+GK+++E
Sbjct: 377 RTPMNGVIGMTE-LALDTALTEEQREYLDIVKSSAESLLAIINDILDFSKIEAGKLQVEE 435
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL + + + + +++ N+E + ++ +P +V GDP R+ Q+ NL+ N+IKF
Sbjct: 436 ISFDLHRVIADTLKTLALRAHEKNLELISEVMPKVPCHVFGDPSRIRQVLVNLLGNAIKF 495
Query: 555 TSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFE 614
T G I + RT+L + D + F
Sbjct: 496 TEQGEI---------------------------SLRTELIKVV--------DGNAYIHFA 520
Query: 615 VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 674
V DTG GI K E +FE+F Q D STTR+ GGTGLGLSI R LV MGGEI + +
Sbjct: 521 VSDTGVGIAPDKQELIFEAFSQEDTSTTRRFGGTGLGLSISRHLVALMGGEIWLESQLGR 580
Query: 675 GTLMQLYLLLGASSE 689
G+ L L ++
Sbjct: 581 GSTFHFSLKLAIDTQ 595
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 27/171 (15%)
Query: 932 QPCSSSNSSSNQKRILE---GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
QP ++ ++ N+ + E L ILL ED P+ Q +A +LEK G ++ +G +A+
Sbjct: 732 QPLATRHTLLNRHVLRELQRSLNILLVEDHPVNQKLALGLLEKWGHQATLANNGQEAL-- 789
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE-SEHGA 1047
+ +ES+ FDLILMD QMP M G EAT+ IR+ E ++
Sbjct: 790 ---AIFSESA------------------FDLILMDMQMPVMGGLEATLRIRQMELADESR 828
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
R PI+A+TA AM D + CLGVGM+ YL+KPI + ++ +L MP+
Sbjct: 829 RRTPIIAMTASAMQGDREACLGVGMDEYLSKPIKARELLEKLLSFGAQMPA 879
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD I++D QMP MDGYE ++R +EH + P++ L++ AM DE++C G++AY
Sbjct: 655 FDCIILDAQMPAMDGYELARQLR---AEH-PQLPPMLMLSSSAMRGDEQRCQAAGIDAYF 710
Query: 1077 TKPIDSERMVSTILRL 1092
+KPI SE ++S + R
Sbjct: 711 SKPISSEDLLSALRRF 726
>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 906
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 240 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 299
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 300 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 359
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 360 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 410
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 411 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 444
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 445 TRQFGGTGLGLAISKQLVHLMHGQI 469
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 684 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 743
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 744 VTKPIQMEQIIQILTQWTKN 763
>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
Length = 935
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
Length = 906
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 149/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 240 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 299
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 300 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 359
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 360 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 410
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 411 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 444
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 445 TRQFGGTGLGLAISKQLVHLMHGQI 469
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 684 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 743
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 744 VTKPIQMEQIIQILTQWTKN 763
>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
Length = 1003
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 183/364 (50%), Gaps = 40/364 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
++ + VIG + IL +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 332 LTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 391
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM I+G+L +L D L++ Q + AL+ L+N +LD +K+E+GK+ELE
Sbjct: 392 RTPMNGILGMLALLLDTD-LSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEA 450
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
F+L+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+KF
Sbjct: 451 VPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQIITNLVGNSVKF 510
Query: 555 TSSGHIIIR--------------------GWCENLDTSKNTAEFPT--------DRKKFG 586
T GHI ++ G + S ++F T D+ +
Sbjct: 511 TERGHIFVQVHLAEHTKALMDAKAETCLNGGSDEGLVSNGGSQFRTLSGCEAADDQNSWD 570
Query: 587 R----AFRTKLKQQANNAMNFRED--NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
R F L+ A+N M + K+ L V+DTG GI VF F Q D S
Sbjct: 571 RFKHLIFDEDLRSDASNIMTVTSEASEKVTLMVSVEDTGIGIPLRAQGRVFTPFMQADSS 630
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-----ASSESKQIYD 695
T+R +GGTG+GLSI + LV MGG+IK + + G+ G A S+ K+
Sbjct: 631 TSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGRCKKNALSDLKKSNS 690
Query: 696 ADFP 699
D P
Sbjct: 691 DDLP 694
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 38/185 (20%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N S+ + +L G +IL+ +D + + VA L+K GA V G A++
Sbjct: 837 KRQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQL 896
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE---- 1044
L + P FD MD QMP+MDG+EAT IR ES+
Sbjct: 897 L--------------------QLPHN--FDACFMDIQMPEMDGFEATRRIRLIESKANEQ 934
Query: 1045 ------------HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
G ++PI+A+TA ++A KCL GM+ Y++KP + E + + +
Sbjct: 935 MNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKF 994
Query: 1093 TKNMP 1097
K+ P
Sbjct: 995 FKSKP 999
>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
Length = 1001
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 184/350 (52%), Gaps = 20/350 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 367 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 426
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 427 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 485
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSI
Sbjct: 486 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSI 545
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFPTDRKKFG----RAFRTKLKQQA 597
KFT GHI + C ++T +NT + +P ++ R F +L
Sbjct: 546 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRCSWESIRLFNRELHSSE 605
Query: 598 NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ D+ ++L V+DTG GI VF F Q PS R HGGTG+GLSI +
Sbjct: 606 KSFAPIASDS-ISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKC 664
Query: 658 LVNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFP--NTVVV 704
LV M GEI K G T +L+ A + I ++F N +VV
Sbjct: 665 LVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVV 714
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 853 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK--------------- 897
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 898 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 950
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 951 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 996
>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
Length = 935
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
Length = 949
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 178/318 (55%), Gaps = 47/318 (14%)
Query: 384 IGCICILILTN-GVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
IG I +I T ++K+ A+L A+ +AEA+N KS+FLANMS E+RTPM I
Sbjct: 290 IGNIKYIICTAVDITKQRSAEAQLYK---AKEEAEAANIAKSKFLANMSREIRTPMNGIF 346
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G LE+L+ + L++EQ + + K +S LL ++N ILDLSK+E+ K+ +EN F+L+
Sbjct: 347 GFLELLELTN-LSSEQKEFIREAKSASEVLLHIINDILDLSKIEARKLIMENISFNLRDA 405
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
+E+ V + + + + +E + + +++P V GDP R+ QI +NLI N++KFT G++ I
Sbjct: 406 IEDTVSLLAPKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLIYNAVKFTEKGYVSI 465
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRE-DNKLALC-FEVDDTGC 620
+M++ E D+++AL FEV+DTG
Sbjct: 466 -------------------------------------SMDYLEKDHEIALVNFEVEDTGI 488
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GI VFE+F Q D STTRK+GGTGLGL I L+ MGG+I+V K G+ +
Sbjct: 489 GIATEDIPKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKF 548
Query: 681 YLLLGA---SSESKQIYD 695
+ L +SE + ++D
Sbjct: 549 NVNLKIAKRASEQRCLFD 566
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 25/139 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED + + + +++ T V DG +A++A+ +
Sbjct: 721 KILLVEDNEINRKIFISMIKSRNFTCDVAVDGSEALKAVEK------------------- 761
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+D+I MDCQMP MDGYE+T +IRK E ++ IVA+TA+AM D +KC+
Sbjct: 762 ----KDYDIIFMDCQMPTMDGYESTAKIRKLEG--NKKHTRIVAMTANAMEGDSEKCIEA 815
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ Y++KPI+ +M I
Sbjct: 816 GMDDYISKPINFNKMFKII 834
>gi|336309925|ref|ZP_08564898.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866485|gb|EGM71463.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1765
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 176/318 (55%), Gaps = 38/318 (11%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL ++ + L A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q
Sbjct: 1018 ELKLLSDEL--LIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQ 1074
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V +I+++S +LL ++N ILD SK+E+GK+++E+ F L LE+L DMFS + ++
Sbjct: 1075 KNYVEKIERASQSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQ 1134
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++ N+PR++ GD R+ Q+ NL+NN+IKFT G +++
Sbjct: 1135 LELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLL---------------- 1178
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
L +Q N+ + R F V D+G G+ + +F+SF Q D
Sbjct: 1179 -----------SLNLVEQQNDDVTLR--------FSVRDSGIGLTDEQQAKLFKSFSQAD 1219
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK+GGTGLGL+I + LV MGG I V + G+ + L SS K + +
Sbjct: 1220 TSTTRKYGGTGLGLAICKQLVELMGGSIGVESQFGHGSTFYFTVKLQISSGQKLVIGQEL 1279
Query: 699 PNTVVVLATVGSMERMII 716
V++ + R I+
Sbjct: 1280 EGMSVLVVDDNATARDIM 1297
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L+Q
Sbjct: 1421 LKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALD--------------KLMQQ 1466
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
S FDL+LMDCQMP MDGY+AT +R+ +P++A+TA+AM D +
Sbjct: 1467 S---------FDLVLMDCQMPVMDGYQATKALRQRPE---LAELPVIAMTANAMAGDREM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C+ GMN ++ KPI+ + T+L+
Sbjct: 1515 CIRAGMNDHIAKPIEVNILYQTLLK 1539
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 33/156 (21%)
Query: 940 SSNQKRI----LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
SS QK + LEG+ +L+ +D + + LE +G V V G EA+NR
Sbjct: 1268 SSGQKLVIGQELEGMSVLVVDDNATARDIMRTTLEGMGFLVDTVRSG---DEAVNRCTQR 1324
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
+ + + L+D +MP +DG + +I + A+ P I+
Sbjct: 1325 D--------------------YAVALIDWKMPNLDGLDTARQILQQ-----AKTPPRILM 1359
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AHA + +G+ Y++KPI + R++ I+
Sbjct: 1360 VSAHANQEFLTQIEQLGLAGYISKPISASRLLDGIM 1395
>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1023
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 184/350 (52%), Gaps = 20/350 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 449 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 507
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSI
Sbjct: 508 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSI 567
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFPTDRKKFG----RAFRTKLKQQA 597
KFT GHI + C ++T +NT + +P ++ R F +L
Sbjct: 568 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRCSWESIRLFNRELHSSE 627
Query: 598 NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ D+ ++L V+DTG GI VF F Q PS R HGGTG+GLSI +
Sbjct: 628 KSFAPIASDS-ISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKC 686
Query: 658 LVNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFP--NTVVV 704
LV M GEI K G T +L+ A + I ++F N +VV
Sbjct: 687 LVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVV 736
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 875 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK--------------- 919
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 920 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 972
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 973 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 1018
>gi|424743166|ref|ZP_18171479.1| GHKL domain protein [Acinetobacter baumannii WC-141]
gi|422943427|gb|EKU38443.1| GHKL domain protein [Acinetobacter baumannii WC-141]
Length = 935
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 157/300 (52%), Gaps = 37/300 (12%)
Query: 396 VSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
+ +++ LR + S L AR++A S KS+FLANMSHE+RTPM I+G+LE++ D L
Sbjct: 467 IFRDITLRKQYESQLVQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELVLDAD-L 525
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
EQ + S LL LLN ILDLSKVE+GKMELE+ +F+L++ LEE +F+ Q
Sbjct: 526 PPEQKDYIRIANSSGQTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQA 585
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+E + D++P GDP R+ Q+ +NL+ N+IKFT G I +
Sbjct: 586 QGKGLEIAALIDDSVPEYANGDPTRLRQVITNLLGNAIKFTDQGEITLAA---------- 635
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
+ Q+A D L + DTG GI E +FE F
Sbjct: 636 -----------------DVTQEA--------DQSWRLHIGIRDTGIGIAADAQERIFEGF 670
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
Q D STTR++GGTGLGL++ R + +MGG+I + G+ L + E + ++
Sbjct: 671 TQADGSTTRRYGGTGLGLTLSRRIATRMGGQIWLESTLDQGSTFHFTARLKPAKEPEALF 730
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GLRILLAED + + VA LEK G TV +G +A+E
Sbjct: 885 GLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERF------------------- 925
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+ P FDL+LMDCQMP MDG EAT IR+ E E G+ + PI+A+TA + + C
Sbjct: 926 CQQP----FDLVLMDCQMPVMDGLEATRAIRQREGEQGSDSTPIIAMTAFSSEQNLADCR 981
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ + KP E + +L T P ++ T
Sbjct: 982 AAGMDGKIGKPFRPEALYQLLLEHTARKPVRSSFT 1016
>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
Length = 865
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 197/387 (50%), Gaps = 21/387 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 232 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 291
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 292 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 350
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSI
Sbjct: 351 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSI 410
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFPTDRKKFG----RAFRTKLKQQA 597
KFT GHI + C ++T +NT + +P ++ R F +L
Sbjct: 411 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRCSWESIRLFNRELHSSE 470
Query: 598 NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ D+ ++L V+DTG GI VF F Q PS R HGGTG+GLSI +
Sbjct: 471 KSFAPIASDS-ISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKC 529
Query: 658 LVNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMII 716
LV M GEI K G T +L+ A + I ++F ++ + +
Sbjct: 530 LVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVVDHRPVRAKVT 589
Query: 717 SQWLRKKKVSTLETSEWHGLTQILREL 743
L++ V T T+E L Q + +L
Sbjct: 590 KYHLQRLGVKTELTAE---LNQFISKL 613
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 39/166 (23%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D ++ + L+K GA V+ G +A+ L
Sbjct: 718 LLHKKQIIVVDDN-IVNLKVAGALKKYGAEVTCADSGKKAITLLK--------------- 761
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 762 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 814
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 815 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 860
>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
Length = 866
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 197/387 (50%), Gaps = 21/387 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 232 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 291
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 292 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 350
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSI
Sbjct: 351 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSI 410
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFPTDRKKFG----RAFRTKLKQQA 597
KFT GHI + C ++T +NT + +P ++ R F +L
Sbjct: 411 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRCSWESIRLFNRELHSSE 470
Query: 598 NNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ D+ ++L V+DTG GI VF F Q PS R HGGTG+GLSI +
Sbjct: 471 KSFAPIASDS-ISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKC 529
Query: 658 LVNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMII 716
LV M GEI K G T +L+ A + I ++F ++ + +
Sbjct: 530 LVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVVDHRPVRAKVT 589
Query: 717 SQWLRKKKVSTLETSEWHGLTQILREL 743
L++ V T T+E L Q + +L
Sbjct: 590 KYHLQRLGVKTELTAE---LNQFISKL 613
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 718 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK--------------- 762
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 763 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 815
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 816 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 861
>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1258
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 157/280 (56%), Gaps = 14/280 (5%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R A A+ KS+FLA MSHE+RTPM +IG+ +L D QLT++Q V I+ S L
Sbjct: 538 RDVALAATRAKSEFLATMSHEIRTPMNGVIGMTGLL-LDTQLTSQQQEFVTTIRHSGDTL 596
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L ++N ILD SK+ESGK+ELE FDLQ +E +D+ + + S+ N+E ++ PR
Sbjct: 597 LTIINDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRM 656
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ GD R+ QI NL++N++KFT SG +I+ E LD + +R + + +
Sbjct: 657 IIGDVTRLRQILVNLLSNAVKFTQSGEVIVSVNAEKLDYEQ------WERPETKTSLTPR 710
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
+ ++R + F V DTG GI + +F+ F Q D STTRK+GGTGLGL
Sbjct: 711 ITPSVATP-HYR------IQFAVKDTGIGIPPERLNRLFQPFSQVDSSTTRKYGGTGLGL 763
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
+I + L MGG + V + G+ L++ A ++Q
Sbjct: 764 AICKQLCEMMGGTMWVESQEDIGSTFYFTLVVPADPSTQQ 803
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 27/144 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED P+ Q VA +L+++G V +GL+ +EAL R
Sbjct: 961 LRILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQRQ----------------- 1003
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKS----ESEHGARNIPIVALTAHAMNADEK 1065
+D++ MD QMP+MDG EA+ I + + + ++ I+A+TA+AM D +
Sbjct: 1004 ------PYDVVFMDVQMPEMDGLEASRRICQEWCDLDGKTQSQRPRIIAMTANAMVGDRE 1057
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTI 1089
C+ GM+ Y++KPI E +V +
Sbjct: 1058 MCIEAGMDDYISKPIRIEELVEAL 1081
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P + N++ + L+G R+L+ +D + + + + G G+QA++ L+
Sbjct: 799 PSTQQNTNQVCRLELDGQRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLH-- 856
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
QG RFDL ++D QMP+MDG +IRK G + +P+
Sbjct: 857 ------------QGE--------RFDLAILDMQMPEMDGVTLAQKIRKLP---GCQTLPL 893
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
V L++ + + +LTKPI ++ +++ +P
Sbjct: 894 VMLSSLGELQVDTPDVKQTFAGFLTKPIKQSQLCDVLMQAMAGIP 938
>gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
Length = 726
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 161/288 (55%), Gaps = 37/288 (12%)
Query: 393 TNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
N V +EM+ + E I H A+ A ++N KS FLANMSHE+RTP+ I+G+ EIL S
Sbjct: 351 VNRVVEEMQRQTEEILH--AKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQS 407
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
+L++ Q V I SS LL LLN ILDLSK+ESG++EL E D+++ + + + +F
Sbjct: 408 ELSSHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQS 467
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ ++ ++ ++L++NIP V D RV Q+ +NL++N++KFT SGH+ + D S
Sbjct: 468 KATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCV-------DVS 520
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
E P E + L F+V+DTG GIDQ K T+FE
Sbjct: 521 YE--ELP-------------------------EKERGVLTFKVEDTGIGIDQDKLTTIFE 553
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D +R+ GGTGLGL+I LV+ MGG++ GT +
Sbjct: 554 PFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKLVATSTKGVGTCFEF 601
>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
Length = 1382
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 147/279 (52%), Gaps = 36/279 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AE +N KS FLANMSHE+RTPM AIIG+ + + + T +Q + +I ++ A
Sbjct: 541 ARIAAEEANRTKSDFLANMSHEIRTPMNAIIGMTHLAQRTNP-TPKQKGYLTKIGNAAEA 599
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK++LE+ F L L LVDM ++ VE VL ++ ++PR
Sbjct: 600 LLGIINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMVGIKAGQKGVEVVLAVAPDVPR 659
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ QI NL NN++KFT G IIIR N + PT GR
Sbjct: 660 TLIGDPLRLGQILINLANNAVKFTDKGEIIIR--------VVNAPDIPT----AGR---- 703
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L V DTG G+ + +F SF Q D S TRK+GGTGLG
Sbjct: 704 -------------------LMVSVRDTGIGMTSEQVSNLFHSFNQADTSITRKYGGTGLG 744
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
L+I + L MGG + V + G+ G S E+
Sbjct: 745 LAISKQLCEMMGGTVCVESEPGKGSTFIFTAQFGVSDEA 783
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 32/179 (17%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D I MF G + R + + +Q L G ++LL ED + + +A ++L +
Sbjct: 915 DTISEMF------GGASRTVDSGPLHMADDQSPSLAGRKVLLVEDNEINRDLAIELLSDL 968
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
G VS+ +G V + ++ P FDL+LMD QMP MDG
Sbjct: 969 GLLVSIAENGQDGV---------------ARVRADP--------FDLVLMDIQMPVMDGL 1005
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT IR E R++PI+A+TAHAM+ D ++ L GMN ++TKPI+ + T++R
Sbjct: 1006 TATKLIRADER---FRDLPIIAMTAHAMSGDRERSLEAGMNDHITKPINPGHLTDTLIR 1061
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMN 1061
L + S + TP FDL+LMD +MP MDG EA+ I+ + IP I+ ++A
Sbjct: 837 LAEASQAGTP----FDLVLMDWRMPGMDGIEASHRIKADAT---LSQIPSILMVSAFGRE 889
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ LG ++ +L KP++ ++ TI
Sbjct: 890 EMAEGSLGGDLDGFLIKPVNESVLIDTI 917
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
DLIL+D MP +DGYE R+ ++E IP++ +T +A E L +G ++T
Sbjct: 1268 DLILLDVMMPGIDGYEVC---RRLKAEPLTSAIPVIFITGLGDDASETHGLELGAVDFVT 1324
Query: 1078 KPI 1080
KPI
Sbjct: 1325 KPI 1327
>gi|424030348|ref|ZP_17769832.1| his Kinase A domain protein [Vibrio cholerae HENC-01]
gi|408881972|gb|EKM20827.1| his Kinase A domain protein [Vibrio cholerae HENC-01]
Length = 641
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 164/294 (55%), Gaps = 40/294 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L ++Q V I SS
Sbjct: 232 EARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDDQQKDFVSIINSSSN 290
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 291 SLMVIIDDILDFSKIEAGKIELETTTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLP 350
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GD GR+ Q+ SNL++N++KFT GH+ L S+ +
Sbjct: 351 LEVEGDVGRLKQVLSNLLSNAVKFTERGHV-------KLMVSQVS--------------- 388
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
RE+ ++ F V D+G GI + + VFE F+Q D STTRK+GGTGL
Sbjct: 389 -------------REEGVASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGL 435
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE---SKQIYDA-DFPN 700
GL+I +LV MGGEI++ + G+ + + L SE S Q + DFPN
Sbjct: 436 GLAICSSLVEVMGGEIRLTSEPGLGSCFEFTIPLNIVSEKAISPQTPNVFDFPN 489
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G +A++
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGEEALQQCQ--------------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+FDLILMDCQMP MDG+ AT IRK + E G + +PI+AL+A+ + D+K+C VG
Sbjct: 550 --AHKFDLILMDCQMPVMDGFIATENIRKMD-EWG-QQVPIIALSANVIKEDQKRCFDVG 605
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 606 MNEFVAKPVTKERLQQIFERYLPDSLQTRSNPKQAT 641
>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424185|ref|ZP_18914319.1| GHKL domain protein [Acinetobacter baumannii WC-136]
gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425698925|gb|EKU68547.1| GHKL domain protein [Acinetobacter baumannii WC-136]
Length = 935
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 949
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 173/325 (53%), Gaps = 51/325 (15%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRK--------------AEASNNYKSQFL 427
++G CIL+ +T E LR DA R+ A+ +N KS+FL
Sbjct: 244 IMGFQCILLDITRQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLANMAKSEFL 303
Query: 428 ANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 487
ANMSHE+RTPM ++G++ +L + +LT EQ ++ S+++LL ++N ILD SK+E+
Sbjct: 304 ANMSHEIRTPMNGVVGMISLL-LETELTREQKEYAETVRNSAHSLLEIINDILDFSKIEA 362
Query: 488 GKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNL 547
GK++LE +FDL+ LEE D+ +++ +E V + ++P ++GDP R+ QI NL
Sbjct: 363 GKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDPVRLRQIVLNL 422
Query: 548 INNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 607
NN++KFT+ G I I R +L +QA +
Sbjct: 423 ANNAVKFTAQGSITI---------------------------RVELLKQAPDL------- 448
Query: 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 667
LAL F V DTG G+ S+ +++F++F Q + STTR +GGTGLGL+I + L M G I
Sbjct: 449 -LALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRNYGGTGLGLAISKKLAQMMKGRIG 507
Query: 668 VVKKNSPGTLMQLYLLLGASSESKQ 692
+ + G+ G +++K+
Sbjct: 508 LESEEGKGSTFWFTAQFGKQAQAKE 532
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 23/138 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED P+ Q VA IL+K+G V +G +AV+AL
Sbjct: 695 ILVAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALCE-------------------- 734
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
++ ++ MDCQMP MDGYEAT IR S P++A+TAHAM D KKC+ G
Sbjct: 735 ---KKYTMVFMDCQMPDMDGYEATRRIRSRRSCVLDPKTPVIAMTAHAMEGDRKKCIEAG 791
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ YL+KP++ ++ I
Sbjct: 792 MDDYLSKPVEPGALIEMI 809
>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1033
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 158/280 (56%), Gaps = 40/280 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSS 469
A+ +AEA++ KS+FLANMSHE+RTPMA I+G LE++ ++DD+ E + +S+
Sbjct: 512 AKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMVSARTDDE---ESRRLMKMTLESA 568
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+L +++N ILDLSKVE+GK+E+E+ EFD Q + ++D++S+Q N+E LD + I
Sbjct: 569 RSLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMDLYSIQAGEKNIELQLDTAPGI 628
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR + GD R+ Q+ NL++N++KFTS G +I+
Sbjct: 629 PRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVIL--------------------------- 661
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
R + Q A+ K L FEV+DTG GI + +F+SF Q D + +KH GTG
Sbjct: 662 RVRPVQAAS--------GKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTG 713
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
LGL+I LV MGG+I+ G++ L +E
Sbjct: 714 LGLAISNRLVQMMGGDIQAQSIPGAGSIFSFSLPFAIPAE 753
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 40/176 (22%)
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
H G R D S+ S S Q L+IL+AED L Q +L++ G + +G
Sbjct: 754 HTAGEKRSD--TQSAVSFSRQ------LKILVAEDVKLNQDYIRFVLKQKGHQAVIAGNG 805
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
L+AV+A P + FDL+LMD QMP +DG E IR+ E
Sbjct: 806 LEAVQAF-----------------VPGQ------FDLVLMDIQMPDIDGLETARRIREKE 842
Query: 1043 ------SEHGARN---IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
S+ G R+ +PI+ALTA+AM + ++ L GM+ Y++KP+D E + I
Sbjct: 843 ESSGRTSDVGPRDSGRVPIIALTAYAMPEERQEFLQSGMDGYVSKPVDPEDLFREI 898
>gi|334117721|ref|ZP_08491812.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460830|gb|EGK89438.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 959
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/557 (27%), Positives = 249/557 (44%), Gaps = 77/557 (13%)
Query: 187 DDLINIAGISQVPDGVASWH-VAVSKFTNSPLLSAALPVW-DPTTSNKSIVAVVGVTTAL 244
D+ N A V G +W V +S + ++SA PV+ D + A + L
Sbjct: 164 DNRQNTAYKKAVRVGQPTWSSVYISLLEPTLIISAIQPVYSDKNKLEGGLFAAL----RL 219
Query: 245 SSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMG 304
+G + L SG ++ ++G LLATST+ L K +S NP +
Sbjct: 220 DHLGIFLHSLKVGKSGQTFIIDRQGTLLATSTSEKPFRTKGNERQLFKVEESRNPFTRST 279
Query: 305 AQWLQSEYGSKVPPGHVI---HVQNAKLGHKQYYMDTF-FLNLKRLPIVGVIIIPREYIM 360
A++L ++Y H+I + + ++ HK+ ++ F + K L + V+++P
Sbjct: 280 AKYLTAQYQKL----HLIKKSELLSFEINHKRQFLKVLPFQDGKGLDWLIVVVVPEADFT 335
Query: 361 GKADERAYKTLIILISASVCILV-IGCICILILTNGV----------------------- 396
+ D +T ++L A++ + V IG + +TN +
Sbjct: 336 AEIDANT-RTAVLLCFAALGVAVGIGILTSQWVTNPILSLNIAAKNIAKGEWDTTVESER 394
Query: 397 -----------------------SKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHE 433
+ E +++ A+ KAE +N KS FLANMSHE
Sbjct: 395 SDELGELAKSFNSMAQQLQQSFETLEQRVQERTAELAVAKDKAEVANQAKSTFLANMSHE 454
Query: 434 LRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
LR+P+ AI+G +++ L E + I S LL L+N +LDLSK+ESG+ L
Sbjct: 455 LRSPLNAIMGFSQLMTRSQTLCPEHQENISIISSSGEHLLTLINNVLDLSKIESGRTTLN 514
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
+FDL + L +L DMF ++ + ++ V D S +P+ V D ++ QI NL+NNS+K
Sbjct: 515 LKKFDLYRLLNDLEDMFELKADDKQLQLVFDRSPEVPQYVEADEVKLRQILINLLNNSLK 574
Query: 554 FTSSGHIIIRGWCENL--------------DTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
FT G + +R ++L + S NT ++ K + +K + A
Sbjct: 575 FTHEGGVTVRVSKQSLGRIQQAEGENFAHSEVSPNTEFSASNGLKISQLSHSKNQVIATQ 634
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ + L FEV+DTGCGI ++ + +FE F Q + GTGLGL I R V
Sbjct: 635 NDDSASTSSFFLHFEVEDTGCGIATNELDALFEPFVQTKTGKDSQE-GTGLGLPISRKFV 693
Query: 660 NKMGGEIKVVKKNSPGT 676
MGG++ V GT
Sbjct: 694 ELMGGQMSVSSAVGKGT 710
Score = 47.0 bits (110), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D L + + K+L +G + +G +A+E
Sbjct: 746 RILIVDDKLLNRQLLIKLLYPLGFELKEATNGQEAIEIW--------------------- 784
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D+ LI MD +MP MDGYEAT I+ + + I+ALTA + + L
Sbjct: 785 --DSWEPHLIWMDMRMPVMDGYEATQYIKGTIK---GQATAIIALTASVLEEERAVILSA 839
Query: 1071 GMNAYLTKPI 1080
G +A++ KP
Sbjct: 840 GCDAFMRKPF 849
>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 536
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 186/349 (53%), Gaps = 53/349 (15%)
Query: 388 CILILTN---GVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
C++ +T+ V++E LR +++ + +A+ ++ K+ FLA+MSHE+RTP+ AI+G+
Sbjct: 123 CMIQITDVSQQVTREKLLREQMVVAKEREVEAKKASQAKTDFLASMSHEIRTPLNAILGM 182
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
+ L ++ LTNEQ + ++ S AL ++N ILDLS++ESGK+E+E+ EF ++ L+
Sbjct: 183 ADTL-TETNLTNEQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLK 241
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E + +F ++ + ++ +SD+I ++GD R+ QI NLI N++KFT G I +
Sbjct: 242 ETISLFLMKAKSKGIQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFTEIGKIYV-- 299
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
A D+K +LC V+DTG GI
Sbjct: 300 ----------DASLSQDQK--------------------------SLCLIVEDTGIGIPN 323
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL-- 682
K ++FESF Q D STTR++GGTGLGL+I + L+ M GEI V + G+ L +
Sbjct: 324 EKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQLGKGSKFVLNIPY 383
Query: 683 --LLGASSESKQIY------DAD-FPNTVVVLATVGSMERMIISQWLRK 722
L+ S Q + DA+ FP ++LA II +LRK
Sbjct: 384 EGLVHRDSNIHQHWLDLELPDAENFPKCRILLAEDSEENVFIIKTFLRK 432
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 26/133 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILLAED+ + L K + + +G A++ M +E
Sbjct: 412 RILLAEDSEENVFIIKTFLRKYPIELVIAKNGKIALQ----MFQSE-------------- 453
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR---NIPIVALTAHAMNADEKKC 1067
+FD++LMD QMP+MDG EAT +IR E IPI+A++A+ D K
Sbjct: 454 -----KFDIVLMDMQMPEMDGLEATKQIRLYEHNQNIDPLFAIPIIAISANVQKEDISKS 508
Query: 1068 LGVGMNAYLTKPI 1080
G+ +Y++KP+
Sbjct: 509 FMAGITSYISKPV 521
>gi|358011449|ref|ZP_09143259.1| Sensor protein gacS [Acinetobacter sp. P8-3-8]
Length = 937
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + ++ D L+N+Q
Sbjct: 271 LEVQNITYKQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLY 330
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++E
Sbjct: 331 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEM 390
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+ + V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 391 AFYFADNVHKYVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 441
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 442 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 475
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 476 TRQFGGTGLGLAISKQLVHLMQGQI 500
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
D FDLI MD QMP M G + T IR ES +PI+ALTAHA+ +++K L VGM
Sbjct: 713 DEKAFDLIFMDIQMPVMSGIDTTRAIRSLESTLDDLRMPIIALTAHALADEKQKLLKVGM 772
Query: 1073 NAYLTKP 1079
+ Y+TKP
Sbjct: 773 DDYVTKP 779
>gi|375137100|ref|YP_004997750.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 935
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQI 498
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
Length = 1023
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 18/349 (5%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S LVI + I V + K+ + + +++AE ++ KSQFLA +SH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 449 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 507
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSI
Sbjct: 508 ETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSI 567
Query: 553 KFTSSGHIIIRGW-------CENLDTS-KNT---AEFP-TDRKKFGRAFRTKLKQQANNA 600
KFT GHI + C ++T +NT + +P +R++ + R ++ ++
Sbjct: 568 KFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSGYPVANRRRSWESIRLFNRELHSSE 627
Query: 601 MNFR--EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+F + ++L V+DTG GI VF F Q PS R HGGTG+GLSI + L
Sbjct: 628 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 687
Query: 659 VNKMGGEIKVVKKNSPG-TLMQLYLLLGASSESKQIYDADFP--NTVVV 704
V M GEI K G T +L+ A + I ++F N +VV
Sbjct: 688 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIKSSEFKGINALVV 736
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V+ G +A+ L
Sbjct: 875 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK--------------- 919
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P FD MD QMP+MDG+EAT IR E + R
Sbjct: 920 --PPHN-----FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWR 972
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ S + R +N
Sbjct: 973 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFFQN 1018
>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 969
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 144/271 (53%), Gaps = 39/271 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE++N KS FLA MSHE+RTPM A+IG+ E+L + +L EQ + ++ + A
Sbjct: 588 AREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVLL-ETKLDQEQRHYIETLQHAGEA 646
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+ESG+MEL +FDL K + E +F VQC +E L+ ++ P
Sbjct: 647 LLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPT 706
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NLI N++KFT G + + +++ K
Sbjct: 707 YIHGDQARIRQILFNLIGNAVKFTDEGSVTVE--IRSIEQEKT----------------- 747
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L F++ D+G GI K ET+F+ F Q D S +R+HGG+GLG
Sbjct: 748 -------------------LLFKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSGLG 788
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L+I R LV M G I V + G+ L
Sbjct: 789 LTICRHLVEHMKGRIWVDSEEGQGSCFSFTL 819
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
SN Q++ + RILL ED+ QI+ L++ ++ V DG +A+ N
Sbjct: 832 SNPHDAQQKQSKKARILLVEDSKDNQILIRTYLKREPHSLVVAWDGEEALTRFNE----- 886
Query: 997 SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1056
D P FDLI MD QMP MDGY AT IR E PIVALT
Sbjct: 887 ----------------DGP-FDLIFMDMQMPIMDGYAATAHIRALEQARHLTATPIVALT 929
Query: 1057 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
AHA+ DE++ L G NA+LTKPI +++ I
Sbjct: 930 AHALQGDEQRSLQAGCNAHLTKPIRKAHLLAAI 962
>gi|427421152|ref|ZP_18911335.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
gi|425757029|gb|EKU97883.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
Length = 1053
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 160/301 (53%), Gaps = 25/301 (8%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+L++ V +E++ + I AR A A+ KS+FLA MSHE+RTPM A+IG+ +L
Sbjct: 330 LLLMAQWVGREIERQQAAIILAKARDDALAATKTKSEFLATMSHEIRTPMNAVIGMTSLL 389
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
D LT+EQ + V ++ S ALL L+N ILD SK+ESG +ELE FDL+ +EE D
Sbjct: 390 -LDTALTDEQRNFVTTVRNSGNALLTLINDILDFSKIESGHLELEAHPFDLRACIEEAFD 448
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+ + + S +E ++ IP GD R+ Q+ NL+ NS+KFT G I I +
Sbjct: 449 LIAAKASEKQLELAFNIDSAIPNTFVGDVTRLRQVLVNLLGNSVKFTHRGEISI-----S 503
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ K+++ K ++ LCF V DTG GI +
Sbjct: 504 VTNWKSSSPAEPGSKSLAETHQS-------------------LCFAVKDTGIGIPTQRIA 544
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
+F++F Q D STTRK+GGTGLGL+I + L MGG+I V + G+ + L +
Sbjct: 545 RLFKAFSQVDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQVDQGSTFFFTITLQTTV 604
Query: 689 E 689
E
Sbjct: 605 E 605
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 27/152 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q +A ++L+K+G +V +GL+A+ AL R
Sbjct: 766 LQILLAEDNGVNQQLATQLLKKMGYRADLVGNGLEAINALERQ----------------- 808
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D+ILMD QMP MDG AT +I + S A N P I+A+TA+AM D + CL
Sbjct: 809 ------SYDVILMDLQMPDMDGLTATQKICEQWS---AANRPWIIAVTANAMQGDREACL 859
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
GM+ Y++KPI E +V+ + R+ E+
Sbjct: 860 KAGMDDYISKPIRIEELVAALQRVPSRKAQES 891
>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
Length = 936
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 46/337 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYAENIPQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGD 638
D+++ C F V D+G G+ + + +FESF QGD
Sbjct: 434 ------------------------DDEIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQI 693
S TR+ GGTGLGL+I + LV+ M G I ++ +P G+ L + + +
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKGSTFWFTALFKVEEQDEYV 529
Query: 694 YDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLET 730
F + VV ++ +L VS +ET
Sbjct: 530 EHPHFEHLQVVSYLAHPATASVLRSYLENYHVSHIET 566
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + +
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQK----------- 709
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
P FDL+ MD QMP M G + T IR ES +PI+ALTAHA+ +++K
Sbjct: 710 ------LPPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDSGMQLPIIALTAHALADEKQK 763
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
L VGMN Y+TKPI E+++ + TKN S T
Sbjct: 764 LLKVGMNDYVTKPIQMEQIIQILTHWTKNNFSSQT 798
>gi|409993617|ref|ZP_11276752.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
gi|409935526|gb|EKN77055.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
Length = 1242
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 34/255 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KSQFLANMSHE+RTPM ++G+ +L +L +Q V I+ S+
Sbjct: 571 AREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKT-ELDTKQKDFVQAIRTSANH 629
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ ++ELE+ +FDL++ LE ++D+ + Q N +E + N+PR
Sbjct: 630 LLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPR 689
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDPGR+ Q+ NL++N IKFT +G + +R
Sbjct: 690 YLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR---------------------------- 721
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N+ + L L +EV DTG GI +FE+F Q D STTRK GGTGLG
Sbjct: 722 -----VSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQVDASTTRKFGGTGLG 776
Query: 652 LSIVRTLVNKMGGEI 666
L I + LV+ MGGEI
Sbjct: 777 LVICKQLVDVMGGEI 791
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED P+ Q V L +G + +G Q +E L S R
Sbjct: 982 LKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELL-------SDRH--------- 1025
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMPK+DGY T E+RK E R+ ++ALTAHAM +D +KCL
Sbjct: 1026 -------YDLVFMDCQMPKLDGYATTKELRKREGTD--RHTTVIALTAHAMPSDRQKCLS 1076
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KPI E +
Sbjct: 1077 AGMDDYISKPITQEEL 1092
>gi|359427982|ref|ZP_09219025.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
gi|358236644|dbj|GAB00564.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
Length = 936
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 40/334 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 388 AFYYAENIPQHVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKRLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I + +P G+ L E +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMHGQIGFEDNQDRAPTDKGSTFWFTALFKVEEEHDFVEHP 532
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLET 730
F + VV ++ +L VS +ET
Sbjct: 533 HFDHLQVVSYLAHPATASVLRSYLENYHVSHIET 566
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 18/149 (12%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL IL +D IV +L ++ T + G +A++ + +
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQ------------ 708
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
+ P FDL+ MD QMP M G + T IR ES +PI+ALTAHA+ +++K
Sbjct: 709 -----NLPPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQK 763
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
L VGMN Y+TKPI E+++ + TKN
Sbjct: 764 LLKVGMNDYVTKPIQMEQIIQILTHWTKN 792
>gi|428210022|ref|YP_007094375.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428011943|gb|AFY90506.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 1053
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 34/328 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AEA+N KS FLANMSHE+RTPM +IG+ +L + LT +Q V I++S A
Sbjct: 321 ARNTAEAANQAKSAFLANMSHEIRTPMNGVIGMTGLLL-NTSLTPQQQDFVDTIRRSGDA 379
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ES K++LE FDL+ +E +D+ + Q ++ N+E L P
Sbjct: 380 LLTIINDILDFSKIESDKLDLEEQPFDLRVCIENSLDVLAPQAADKNLELAYLLDPQTPA 439
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL++N++KFT G +++ + + N++E+ RKK
Sbjct: 440 TIMGDVTRLCQILVNLLSNAVKFTEHGEVVVSVTTKEI----NSSEYLEGRKK------E 489
Query: 592 KLKQQANNAM-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L Q A+ M F E + F V DTG GI + + +F+SF Q D STTR++GGTGL
Sbjct: 490 QLPQTADYLMPTFYE-----IQFAVKDTGIGIPSDRMDRLFKSFSQVDTSTTRQYGGTGL 544
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV-----VVL 705
GL+I + L MGG + V + G+ + + A PN V +L
Sbjct: 545 GLAISQRLSVMMGGRMWVESQVGVGSTFYFTIAVAA------------PNIVQHESSCIL 592
Query: 706 ATVGSMERMIISQWLRKKKVSTLETSEW 733
+ +I+ +K+ L+ W
Sbjct: 593 PQLHGKRLLIVDDSATNRKILMLQAQSW 620
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 27/141 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q VA +L+++G V +GL+ + AL R
Sbjct: 745 LNILLAEDNTVNQKVALLMLQQMGYRADVANNGLEVLAALQRQ----------------- 787
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEI-RKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+D++LMD QMP+MDG EA +I ++ H R IVA+TA+AM D + CL
Sbjct: 788 ------PYDVVLMDVQMPEMDGLEAARQICQRWFPPHKPR---IVAMTANAMQGDREACL 838
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ YLTKP+ E + +
Sbjct: 839 YAGMDDYLTKPVKIEHLAQAL 859
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D+ + + + G G +A+E L R G
Sbjct: 595 LHGKRLLIVDDSATNRKILMLQAQSWGMLPRAATSGAEALEWLQR--------------G 640
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P FDL ++D QMP+MDG I + + R +P+V LT+ +
Sbjct: 641 DP--------FDLAVLDMQMPQMDGLSLATTIHQHSN---YRKLPLVILTSMGKPEVASQ 689
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL--TKNMPSE 1099
V ++A LTKP+ ++ + +L++ ++ PS+
Sbjct: 690 STAVKLSACLTKPVKQSQLYNVLLQILSEQSQPSQ 724
>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 1235
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 34/255 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KSQFLANMSHE+RTPM ++G+ +L +L +Q V I+ S+
Sbjct: 564 AREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKT-ELDTKQKDFVQAIRTSANH 622
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ ++ELE+ +FDL++ LE ++D+ + Q N +E + N+PR
Sbjct: 623 LLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPR 682
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDPGR+ Q+ NL++N IKFT +G + +R
Sbjct: 683 YLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR---------------------------- 714
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N+ + L L +EV DTG GI +FE+F Q D STTRK GGTGLG
Sbjct: 715 -----VSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQVDASTTRKFGGTGLG 769
Query: 652 LSIVRTLVNKMGGEI 666
L I + LV+ MGGEI
Sbjct: 770 LVICKQLVDVMGGEI 784
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED P+ Q V L +G + +G Q +E L S R
Sbjct: 975 LKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELL-------SDRH--------- 1018
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MDCQMPK+DGY T E+RK E R+ ++ALTAHAM +D +KCL
Sbjct: 1019 -------YDLVFMDCQMPKLDGYATTKELRKREGTD--RHTTVIALTAHAMPSDRQKCLS 1069
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KPI E +
Sbjct: 1070 AGMDDYISKPITQEEL 1085
>gi|373950837|ref|ZP_09610798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386323330|ref|YP_006019447.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333817475|gb|AEG10141.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373887437|gb|EHQ16329.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1784
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 38/323 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I+++S +
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQKNYVEKIERASQS 1090
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++++ F L LE+L DMFS + ++ +E + ++ N+PR
Sbjct: 1091 LLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPR 1150
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1151 YLLGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLSLVE-------------- 1187
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++D+ + L F V D+G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1188 ------------QQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLG 1235
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG+I V + G+ + L S K + + + V++ +
Sbjct: 1236 LAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKLVLEQELEGMSVLVVDDNAT 1295
Query: 712 ERMIISQWLRKK--KVSTLETSE 732
R I+ L +V T+ + E
Sbjct: 1296 ARDIMRTTLESMGFRVDTVRSGE 1318
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L++
Sbjct: 1434 LQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQ-------------- 1479
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IRK N+P+VA+TA+AM D
Sbjct: 1480 ---------HFDLVLMDCQMPVMDGYQATQAIRKRPE---LANLPVVAMTANAMAGDRDM 1527
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C+ GMN ++ KPI+ + T+L+
Sbjct: 1528 CIRAGMNDHIAKPIEVNVLYQTLLK 1552
Score = 40.4 bits (93), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+ +L+ +D + + LE +G V V G +A+ R LLQ
Sbjct: 1282 LEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS-------------RCLLQA 1328
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEAT------IEIRKSESEHGARNIPIVALTAHAM 1060
+++ L+D +MP MDG E + + I+ ++AHA
Sbjct: 1329 ----------YEVALIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHAD 1378
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ + + + Y++KPI + R++ I+
Sbjct: 1379 HEFLTQIEQLALAGYISKPISASRLLDGIM 1408
>gi|424035784|ref|ZP_17774949.1| his Kinase A domain protein, partial [Vibrio cholerae HENC-02]
gi|408897403|gb|EKM33193.1| his Kinase A domain protein, partial [Vibrio cholerae HENC-02]
Length = 607
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 164/294 (55%), Gaps = 40/294 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L ++Q V I SS
Sbjct: 198 EARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDDQQKDFVSIINSSSN 256
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 257 SLMVIIDDILDFSKIEAGKIELETTTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLP 316
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GD GR+ Q+ SNL++N++KFT GH+ L S+ +
Sbjct: 317 LEVEGDVGRLKQVLSNLLSNAVKFTERGHV-------KLMVSQVS--------------- 354
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
RE+ ++ F V D+G GI + + VFE F+Q D STTRK+GGTGL
Sbjct: 355 -------------REEGVASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGL 401
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE---SKQIYDA-DFPN 700
GL+I +LV MGGEI++ + G+ + + L SE S Q + DFPN
Sbjct: 402 GLAICSSLVEVMGGEIRLTSEPGLGSCFEFTIPLNIVSEKAISPQTPNVFDFPN 455
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G +A++
Sbjct: 477 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGEEALQQCQ--------------------- 515
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+FDLILMDCQMP MDG+ AT IRK + + +PI+AL+A+ + D+K+C VG
Sbjct: 516 --AHKFDLILMDCQMPVMDGFIATENIRKMD--EWGQQVPIIALSANVIKEDQKRCFDVG 571
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 572 MNEFVAKPVTKERLQQIFERYLPDSLQTRSNPKQAT 607
>gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
Length = 936
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 150/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 388 AFYYAENIPQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMRGQI 497
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + +S
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQKS---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
P FDL+ MD QMP M G + T IR ES+ +PI+ALTAHA+ +++K
Sbjct: 711 -------PPFDLVFMDIQMPVMSGIDTTRAIRSLESKLDTGMQLPIIALTAHALADEKQK 763
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
L VGMN Y+TKPI E+++ + + TKN S TT
Sbjct: 764 LLKVGMNDYVTKPIQMEQIIQILTQWTKNNFSSQPTTT 801
>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
Length = 803
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 156/287 (54%), Gaps = 38/287 (13%)
Query: 399 EMKLRAELISHLDARRK---AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
E+ L +E L+ RR+ AE ++ KSQFLA MSHE+RTPM +IG+L++L+ D L
Sbjct: 251 ELALLSEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLR-DTPLD 309
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
Q + I +S LL ++N ILD SK+E+GKM+LE F+L +E + +F +
Sbjct: 310 ENQKHYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATAN 369
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
N+E L+ ++PR +RGDP R+ QI NL+ N+ KFT G + + +N
Sbjct: 370 KRNIELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFTEEGFVSLEVGLDN------- 422
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
T L+ + +L L F V D+G GID + +F+SF
Sbjct: 423 ---------------TALQAEG----------RLMLRFVVQDSGIGIDPNSASNLFDSFN 457
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
Q D STTRK+GGTGLGL+I ++L MGG I V K++ G Q +
Sbjct: 458 QADASTTRKYGGTGLGLAICKSLAELMGGRIGV--KSAKGEGAQFWF 502
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 21/131 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++L+AED P+ ++V +L K+G +G +AV+ ++
Sbjct: 670 LQVLVAEDNPVNRMVIKGLLGKLGIQPVFAENGREAVDLVHH------------------ 711
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
RFDLILMDC+MP+MDG+EAT IR+ E G +P+VALTAHA+ +
Sbjct: 712 ---GAQRFDLILMDCEMPEMDGFEATRNIRELERRSGRPAVPVVALTAHALQEHREAVFA 768
Query: 1070 VGMNAYLTKPI 1080
GMN YL KPI
Sbjct: 769 SGMNYYLAKPI 779
>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378707231|ref|YP_005272125.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|418024379|ref|ZP_12663362.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|353536339|gb|EHC05898.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1786
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 38/323 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I+++S +
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQKNYVEKIERASQS 1090
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++++ F L LE+L DMFS + ++ +E + ++ N+PR
Sbjct: 1091 LLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPR 1150
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1151 YLLGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLSLVE-------------- 1187
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++D+ + L F V D+G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1188 ------------QQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLG 1235
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG+I V + G+ + L S K + + + V++ +
Sbjct: 1236 LAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKLVLEQELEGMSVLVVDDNAT 1295
Query: 712 ERMIISQWLRKK--KVSTLETSE 732
R I+ L +V T+ + E
Sbjct: 1296 ARDIMCTTLESMGFRVDTVRSGE 1318
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 26/143 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G RILL ED + VA + LE+VG +S+ +G A++ L++
Sbjct: 1438 GKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQ---------------- 1481
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FDL+LMDCQMP MDGY+AT IRK N+P+VA+TA+AM D C+
Sbjct: 1482 -------HFDLVLMDCQMPVMDGYQATQAIRKRPE---LANLPVVAMTANAMAGDRDMCI 1531
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GMN ++ KPI+ + T+L+
Sbjct: 1532 RAGMNDHIAKPIEVNVLYQTLLK 1554
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+ +L+ +D + + C LE +G V V G +A+ R LLQ
Sbjct: 1282 LEGMSVLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAIS-------------RCLLQA 1328
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEAT--------IEIRKSESEHGARNIPIVALTAH 1058
+++ L+D +MP MDG E + + I+ ++AH
Sbjct: 1329 ----------YEVALIDWKMPNMDGLETARQIQLQAQSQSQSQSQPQSHPQPKILMVSAH 1378
Query: 1059 AMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
A + + + + Y++KPI + R++ I+
Sbjct: 1379 ADHEFLTQIEQLALAGYISKPISASRLLDGIM 1410
>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386342450|ref|YP_006038816.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334864851|gb|AEH15322.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1784
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 38/323 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I+++S +
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQKNYVEKIERASQS 1090
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++++ F L LE+L DMFS + ++ +E + ++ N+PR
Sbjct: 1091 LLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPR 1150
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1151 YLLGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLSLVE-------------- 1187
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++D+ + L F V D+G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1188 ------------QQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLG 1235
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG+I V + G+ + L S K + + + V++ +
Sbjct: 1236 LAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKLVLEQELEGMSVLVVDDNAT 1295
Query: 712 ERMIISQWLRKK--KVSTLETSE 732
R I+ L +V T+ + E
Sbjct: 1296 ARDIMRTTLESMGFRVDTVRSGE 1318
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L++
Sbjct: 1434 LQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQ-------------- 1479
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IRK N+P+VA+TA+AM D
Sbjct: 1480 ---------HFDLVLMDCQMPVMDGYQATQAIRKRPE---LANLPVVAMTANAMAGDRDM 1527
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C+ GMN ++ KPI+ + T+L+
Sbjct: 1528 CIRAGMNDHIAKPIEVNVLYQTLLK 1552
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+ +L+ +D + + LE +G V V G +A+ R LLQ
Sbjct: 1282 LEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS-------------RCLLQA 1328
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEAT------IEIRKSESEHGARNIPIVALTAHAM 1060
+++ L+D +MP MDG E + + I+ ++AHA
Sbjct: 1329 ----------YEVALIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHAD 1378
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ + + + Y++KPI + R++ I+
Sbjct: 1379 HEFLTQIEQLALAGYISKPISASRLLDGIM 1408
>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1767
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 185/336 (55%), Gaps = 40/336 (11%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL ++ + L A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q
Sbjct: 1018 ELKLLSDEL--LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQ 1074
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V +I+++S +LL ++N ILD SK+E+GK+++E+ F L LE+L DMFS + ++
Sbjct: 1075 KNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQ 1134
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++ N+PR++ GD R+ Q+ NL+NN+IKFT G +++ S N E
Sbjct: 1135 LELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLNLVE- 1184
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++++ + L F V D+G G+ + +F+SF Q D
Sbjct: 1185 -------------------------QQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQAD 1219
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK+GGTGLGL+I + LV MGG I V + G+ + L SS K +
Sbjct: 1220 TSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKLQISSGQKLTVAQEL 1279
Query: 699 PNTVVVLATVGSMERMIISQWLRKK--KVSTLETSE 732
+++A + R I+ L +V T+ + E
Sbjct: 1280 EGMSILVADDNATARDIMRTTLESMGFRVDTVRSGE 1315
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 28/157 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L A+ S
Sbjct: 1421 LKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKL-----AQQS-------- 1467
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IRK +P++A+TA+AM D++
Sbjct: 1468 ----------FDLVLMDCQMPVMDGYQATQAIRKRPE---LAELPVIAMTANAMAGDKEM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN--MPSEAT 1101
CL GMN ++ KPI+ + T+L+ +P+EA
Sbjct: 1515 CLKAGMNDHIAKPIEVNLLYQTLLKYLGAGVLPTEAA 1551
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 33/156 (21%)
Query: 940 SSNQK----RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
SS QK + LEG+ IL+A+D + + LE +G V V G +AV ++
Sbjct: 1268 SSGQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQ--- 1324
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
+ + L+D +MP +DG E +I++ A+N P I+
Sbjct: 1325 --------------------EYAVALIDWKMPNLDGIETAKQIKQL-----AKNAPRILM 1359
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AHA + +G+ Y++KPI + R++ I+
Sbjct: 1360 VSAHATQEFLSQIEALGLAGYISKPISASRLLDGIM 1395
>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
Length = 559
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 154/277 (55%), Gaps = 38/277 (13%)
Query: 402 LRAELISH--LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
L E I+H + A+ AE + K++FLA MSHE+RTPM +IG++++L D +L EQ
Sbjct: 146 LELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLL-MDSELQEEQR 204
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
I+ S+ AL+ ++N ILD SK+ESGKMELE FDL+ ++E+ +FS + S N+
Sbjct: 205 EYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNL 264
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
+ + + IP V GD GR+ Q+ NL++N++KFT+ G
Sbjct: 265 QLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEG--------------------- 303
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
G L Q E+++L L F V DTG GI K + +F+ F Q D
Sbjct: 304 ------GVYLVVSLTQV--------EEDRLTLEFTVKDTGIGISSEKIDRLFKPFSQLDS 349
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
S TRK+GGTGLGL+I R+LV MGG+I V K + G
Sbjct: 350 SMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGA 386
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 914 LIHTMFRERHQIGSSRR--DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEK 971
+ TM ++ G RR D+P ++ IL+ +D P+ + + +L+K
Sbjct: 388 FVFTMCVHTYEEGDYRRREDEPTDKFRVHGERQA-----NILIVDDHPINRKLMDSMLKK 442
Query: 972 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPR-FDLILMDCQMPKMD 1030
+G + + DG QAV+ M+A P+ +D+I MD QMP MD
Sbjct: 443 MGMSADMAEDGKQAVD----MVAG-------------------PKVYDIIFMDLQMPVMD 479
Query: 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
G EA IR + +HGA +VA+TA+ M+ +K+C GM+ Y++KP+
Sbjct: 480 GLEAARLIR--QMKHGADAPILVAMTANVMDGIQKRCSDAGMDEYISKPV 527
>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
Length = 1792
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 38/323 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I+++S +
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQKNYVEKIERASQS 1090
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++++ F L LE+L DMFS + ++ +E + ++ N+PR
Sbjct: 1091 LLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPR 1150
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1151 YLLGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLSLVE-------------- 1187
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++D+ + L F V D+G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1188 ------------QQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLG 1235
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG+I V + G+ + L S K + + + V++ +
Sbjct: 1236 LAICKQLVELMGGKIGVESQLGHGSTFYFTVKLHISDGQKLVLEQELEGMSVLVVDDNAT 1295
Query: 712 ERMIISQWLRKK--KVSTLETSE 732
R I+ L +V T+ + E
Sbjct: 1296 ARDIMRTTLESMGFRVDTVRSGE 1318
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L++
Sbjct: 1442 LQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQ-------------- 1487
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IRK N+P+VA+TA+AM D
Sbjct: 1488 ---------HFDLVLMDCQMPVMDGYQATQAIRKRPE---LANLPVVAMTANAMAGDRDM 1535
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C+ GMN ++ KPI+ + T+L+
Sbjct: 1536 CIRAGMNDHIAKPIEVNVLYQTLLK 1560
>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
Length = 1272
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 166/303 (54%), Gaps = 42/303 (13%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKS 450
+ + ++ K+ ELI AR KAEA+ KS FLANMSHE+RTPM A++G+ + L++
Sbjct: 482 MVSDITHRKKMEEELIV---ARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQT 538
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
D LT +Q + +I+ S+ +LL ++N ILD SK+E+GKM +E+ +F+L + LE L M
Sbjct: 539 D--LTPKQRDYLHKIQISANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMI 596
Query: 511 SVQC-SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+V+ +E + D ++PR + GDP R+ QI NL NNSIKFT SG I++
Sbjct: 597 AVKLREKEGIEVLFDTGADVPRQLVGDPLRLSQILVNLANNSIKFTESGEIVV------- 649
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
TK+ Q N+ + L F V DTG G+ +
Sbjct: 650 --------------------STKVVSQGNHV--------IVLQFSVRDTGIGLTEEHMVQ 681
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
+F +F Q D S TR++GG+GLGLSI + LV MGG+I V G+ +L E
Sbjct: 682 LFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYFTAVLRTVRE 741
Query: 690 SKQ 692
S++
Sbjct: 742 SRE 744
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 26/150 (17%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
+S+ + LEG R+LL ED + Q VA +IL G TVS+ +G +AV+A+
Sbjct: 897 ASDLLKSLEGARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAVG--------- 947
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1059
FD +LMD QMP MDGY AT IR+ +++PI+A+TAHA
Sbjct: 948 --------------MNHFDAVLMDLQMPVMDGYTATRTIRQDVR---FKDLPIIAMTAHA 990
Query: 1060 MNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
M D K GMNA++TKPID E + ST+
Sbjct: 991 MADDPDKSRHAGMNAHITKPIDPEVLYSTL 1020
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 28/160 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GL+ L+ +D + + +LE V++ G + +E + + + G
Sbjct: 753 LRGLKALVVDDNATSREIFQSMLECFSFDVTLAASGEEGLEEIGKSVG-----------G 801
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL-TAHAMNADEK 1065
P +D+++MD ++P +DG EA+ I+K+ G IP+V L +A+A
Sbjct: 802 RP--------YDIVVMDWKLPGIDGIEASKRIKKNT---GLTRIPLVILVSAYAREEIMW 850
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRL-----TKNMPSEA 1100
+ G++ +L KPI++ M TI+ K MP A
Sbjct: 851 RAEAAGLDGFLIKPINASVMFDTIMNALAKEGGKEMPPPA 890
>gi|424043145|ref|ZP_17780785.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
gi|408889449|gb|EKM27866.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
Length = 1187
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 175/317 (55%), Gaps = 40/317 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
++ SA V IL I IL+ +++L+A + +AR AE++N KS FLANMSH
Sbjct: 437 LIYSAFVFILAI----ILLAYTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSH 492
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM AIIG+ ++ + +L Q + + ++ +S+ +LLRLLN ILD SKVE+GK+EL
Sbjct: 493 EIRTPMNAIIGMSHLVL-ESELNKHQKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLEL 551
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E T F L + L++ +D+ SV+ + +++ +L + N+P+ + GDP RV QI NL N+I
Sbjct: 552 ERTPFSLDELLDQAIDILSVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAI 611
Query: 553 KFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612
KFT G + +R L+ + T ++ T L
Sbjct: 612 KFTHQGKVTLR-----LNLLRKTKQYST------------------------------LE 636
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672
V+D G G+ + +F SF Q D STTRK+GG+GLGL+I + +++ M G I V
Sbjct: 637 LVVEDEGIGMTPGQINKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKGTISVTSTL 696
Query: 673 SPGTLMQLYLLLGASSE 689
G+ ++ L +E
Sbjct: 697 GKGSTFKVQFELEYCNE 713
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 31/160 (19%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P ++S+ SS K+ RIL+ ED + Q + +L VG V + G +A+E L +
Sbjct: 851 PATTSSGSSLTKK-----RILVVEDHRINQELVRDVLVNVGCVVQIANHGKEALELLVK- 904
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
FD +LMDCQMP MDGY+AT IR+ + +PI
Sbjct: 905 ----------------------HNFDAVLMDCQMPIMDGYQATQNIRQ---KLKLTELPI 939
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ALTA+ + DEKK L GMN L KPID + ST+ +L
Sbjct: 940 IALTANTLAEDEKKALDAGMNCVLHKPIDIPLLKSTLAKL 979
>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 945
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 150/280 (53%), Gaps = 36/280 (12%)
Query: 397 SKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
S E +R A+ AEA+N KSQFLANMSHE+RTPM ++G+ E+L S LT
Sbjct: 252 SLEQAVRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLST-ALTQ 310
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
+Q S + +S L+ ++N ILD SK+E+GK++LE EF L++ +E+ VD+F+
Sbjct: 311 KQRSLTETLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGR 370
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
++E + +IP V GDP R+ QI NL+ N+IKFT SG + + T
Sbjct: 371 KHLELTCFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAV------------TL 418
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
E T L L F + DTG GI ++ +F++F Q
Sbjct: 419 ELVTPTT-----------------------TNLTLKFRIRDTGVGIPEATQARLFQAFSQ 455
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
D STTRK GGTGLGL+IV+ L MGG++ V + G+
Sbjct: 456 ADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGS 495
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 24/130 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LLAED P+ + VA +LE +G T ++V +G +AVEAL RS
Sbjct: 670 VLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALTN---------RS--------- 711
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-ARNIPIVALTAHAMNADEKKCLGV 1070
FDL+LMDC MP+MDG AT IR+ E++ R+ IVALTA+A+ D ++CL
Sbjct: 712 -----FDLVLMDCHMPEMDGLTATALIREQETQATQPRHTTIVALTANALQGDRERCLAA 766
Query: 1071 GMNAYLTKPI 1080
GM+ YL+KP
Sbjct: 767 GMDDYLSKPF 776
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 21/168 (12%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
+Q + +S +R L+G IL+ +D P + + L GA V GL+A+ L+
Sbjct: 504 EQAAQRTAASGATERPLDGFSILIVDDNPTNRHILETHLSAWGAAVLSATSGLEALALLD 563
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R A+ R L ++D MP MDG IR+ G +
Sbjct: 564 RQCTAQR------------------RIHLAVLDIHMPDMDGMTLAQTIREDARLSG---M 602
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
+VAL++ DE + +A+L KP + + RL ++P+
Sbjct: 603 VLVALSSVDQVTDESQRHPSLFSAWLRKPAHQSLLKDCLTRLCHHVPT 650
>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1767
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 185/336 (55%), Gaps = 40/336 (11%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL ++ + L A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q
Sbjct: 1018 ELKLLSDEL--LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQ 1074
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V +I+++S +LL ++N ILD SK+E+GK+++E+ F L LE+L DMFS + ++
Sbjct: 1075 KNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQ 1134
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++ N+PR++ GD R+ Q+ NL+NN+IKFT G +++ S N E
Sbjct: 1135 LELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLNLVE- 1184
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++++ + L F V D+G G+ + +F+SF Q D
Sbjct: 1185 -------------------------QQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQAD 1219
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK+GGTGLGL+I + LV MGG I V + G+ + L SS K +
Sbjct: 1220 TSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKLQISSGQKLTVAQEL 1279
Query: 699 PNTVVVLATVGSMERMIISQWLRKK--KVSTLETSE 732
+++A + R I+ L +V T+ + E
Sbjct: 1280 EGMSILVADDNATARDIMRTTLESMGFRVDTVRSGE 1315
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L A+ S
Sbjct: 1421 LKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKL-----AQQS-------- 1467
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT IRK +P++A+TA+AM D++
Sbjct: 1468 ----------FDLVLMDCQMPVMDGYQATQAIRKRPE---LAELPVIAMTANAMAGDKEM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPI+ + T+L+
Sbjct: 1515 CLKAGMNDHIAKPIEVNLLYQTLLK 1539
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 33/156 (21%)
Query: 940 SSNQK----RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
SS QK + LEG+ IL+A+D + + LE +G V V G +AV ++
Sbjct: 1268 SSGQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQ--- 1324
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
+ + L+D +MP +DG E +I++ A+N P I+
Sbjct: 1325 --------------------EYAVALIDWKMPNLDGIETAKQIKQL-----AKNAPRILM 1359
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AHA + +G+ Y++KPI + R++ I+
Sbjct: 1360 VSAHATQEFLSQIEALGLAGYISKPISASRLLDGIM 1395
>gi|436840385|ref|YP_007324763.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169291|emb|CCO22659.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 568
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 153/277 (55%), Gaps = 41/277 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+ + KAE +N K++FLANMSHE+RTPM +I+G++E+LK + +L NEQ + +
Sbjct: 333 EEKEKAETANRVKTEFLANMSHEIRTPMHSILGMVELLK-ETKLDNEQRGFLDITSTAGE 391
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N +L++SK+E+G +E+E +F L + +E +V MF V S +E ++S ++P
Sbjct: 392 SLLVIINDVLEISKIEAGHLEIEKHDFLLHEMVERVVSMFEVDASKKGLELSCNISSDVP 451
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NLI+NSIKFT+ G + + + EN
Sbjct: 452 FKVTGDPTRIRQVLTNLISNSIKFTADGVVEVSLYVEN---------------------- 489
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ F V D G GI Q K + +F+SF Q D S +RK+GGTGL
Sbjct: 490 ------------------EKVMFSVRDEGVGIAQEKQDIIFQSFTQADSSISRKYGGTGL 531
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I R LV+ MGGE+ V G+ Y+ L +
Sbjct: 532 GLPISRKLVDMMGGEMVVKSIVGEGSTFMFYVDLAEA 568
>gi|347731876|ref|ZP_08864962.1| response regulator [Desulfovibrio sp. A2]
gi|347519345|gb|EGY26504.1| response regulator [Desulfovibrio sp. A2]
Length = 1531
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 181/351 (51%), Gaps = 40/351 (11%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDD 452
G +++ LR S L A+ AE + KS FLANMSHE+RTPM AIIGL + LK++
Sbjct: 700 GAMRDISLRKRAESELLRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGLAHLALKTN- 758
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
L Q V +I+ S LL +LN ILD SK+E+GK+ +ENTEF+L+ L+ + ++ S
Sbjct: 759 -LDPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSE 817
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ + +E VLD++ ++P +RGDP R+ QI N NN++KFT G I++ +++
Sbjct: 818 KAAAKGLEFVLDVAADVPPVLRGDPLRLGQILINYANNAVKFTERGEIVV-----HVEAV 872
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
+ T + +A+ L F V DTG G+ + +F
Sbjct: 873 EKTGQ---------------------DAL---------LRFAVRDTGIGLTPEQKARLFV 902
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
SF+Q D STTRK+GGTGLGL+I + L + MGG++ V G+ LG S +
Sbjct: 903 SFQQADTSTTRKYGGTGLGLAIAKKLADLMGGDVGVESTPGGGSTFWFTARLGLGSGRRT 962
Query: 693 IYDA-DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRE 742
+ D V++ R +++ L T+E +++ E
Sbjct: 963 LVPRIDLRGLRVLVVDDNPQARTVLAHMLEGMTFRTVEADGGESALRVMDE 1013
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 26/159 (16%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P + Q + L G R+LL ED L + VA +L + G DG QAV
Sbjct: 1113 PGAQPGEPPAQLQGLRGARVLLVEDNELNREVALGLLGEAGLAPDAAEDGAQAV------ 1166
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
R +++G +DL+LMD QMP MDGYEAT IR++ G +PI
Sbjct: 1167 --------RMVMEGD---------YDLVLMDVQMPVMDGYEATRAIRRT---LGPDRLPI 1206
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
VA+TA+AM D + CL GMN ++ KPID + + + ++R
Sbjct: 1207 VAMTANAMQGDREACLATGMNDHVAKPIDPDELFAALIR 1245
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 34/175 (19%)
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRI-LEGLRILLAEDTPLIQIVACKILEKVGATVS 977
F R +GS RR + RI L GLR+L+ +D P + V +LE +
Sbjct: 950 FTARLGLGSGRR----------TLVPRIDLRGLRVLVVDDNPQARTVLAHMLEGMTFRTV 999
Query: 978 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIE 1037
G A+ ++ AA G+P F ++ +D QMP MDG E
Sbjct: 1000 EADGGESALRVMDEARAA----------GAP--------FGMVFLDWQMPGMDGLETARR 1041
Query: 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
IR E +P+ +TAH GVG++A L KP+ + T +RL
Sbjct: 1042 IRALAPE-----LPVAIVTAHGREEIFAASEGVGVDAVLVKPVQPSLLFDTAMRL 1091
>gi|402758666|ref|ZP_10860922.1| barA [Acinetobacter sp. NCTC 7422]
Length = 936
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 151/268 (56%), Gaps = 41/268 (15%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYAENIPKHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGD 638
D+++ C F V D+G G+ + + +FESF QGD
Sbjct: 434 ------------------------DDEIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
S TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQI 497
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 20/159 (12%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + +S
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQKS---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES--EHGARNIPIVALTAHAMNADEK 1065
P FDL+ MD QMP M G + T IR ES ++G + +PI+ALTAHA+ +++
Sbjct: 711 -------PPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDNGMQ-LPIIALTAHALADEKQ 762
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
K L VGMN Y+TKPI E+++ + TKN S TT
Sbjct: 763 KLLKVGMNDYVTKPIQMEQIIQILTHWTKNNFSTQPATT 801
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 157/264 (59%), Gaps = 16/264 (6%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A ++ KS FLANMSHE+RTPM ++G+ ++L + LT EQ V +K S
Sbjct: 1011 AREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTN-LTPEQLDFVQTLKLSGQN 1069
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILDLSK+E+G+M LE EF+L + E++D+ + +E V + ++P
Sbjct: 1070 LLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALIDSDVPV 1129
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD R+ QI +NLINN+IKFT +G ++I E + S ++ +K
Sbjct: 1130 QIKGDAARLRQILTNLINNAIKFTEAGEVVI----EVANASNPGLLAASENQKILENIE- 1184
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
KLK + N+ M L F+V DTG GI + +F+SF Q D STTRK+GGTGLG
Sbjct: 1185 KLKIENNDLM--------LLLFKVTDTGIGIAPEDKKKLFQSFTQVDASTTRKYGGTGLG 1236
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L+I + LV MGG+I V +++PG
Sbjct: 1237 LAISKELVELMGGQIGV--ESTPG 1258
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 32/168 (19%)
Query: 931 DQP---CSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
D+P +S+ +S+ R L L+ILL EDTP+ Q V L +G T V +G +A+
Sbjct: 1421 DEPRANLTSNRASAIDNRELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALS 1480
Query: 988 ALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA 1047
M+A + ++D++LMDCQMP +DGYEAT E+R+ E+ A
Sbjct: 1481 ----MVALK-------------------KYDIVLMDCQMPVLDGYEATRELRRREAADAA 1517
Query: 1048 RNIP------IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
N+ ++A+TA+A+ D +KCL GM+ Y++KPI E++ S +
Sbjct: 1518 GNMEPHQKTVVIAMTANALKGDREKCLAAGMDDYISKPISIEKLKSVL 1565
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRR 1001
N + +L G ++L+A D P ++ + ++ G V V +G + +L + ++ S
Sbjct: 1284 NLETVLAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENGWMTIASLYKAVSLNSP--- 1340
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
+D++L+D Q+P+M ++E R SE + V LT+
Sbjct: 1341 ---------------YDIVLVDIQLPEM--VAGSLE-RLRISEPAMQQTKWVVLTSTNQL 1382
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
A+ K+ + G + YLTKP+ + R+ +
Sbjct: 1383 AEAKRLVNSGFSGYLTKPVKAHRLFDCL 1410
>gi|359434240|ref|ZP_09224518.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Pseudoalteromonas sp. BSi20652]
gi|357919123|dbj|GAA60767.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Pseudoalteromonas sp. BSi20652]
Length = 577
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 157/279 (56%), Gaps = 38/279 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+++AE++N KS FLANMSHE+RTPM AIIG+ L D QL+ +Q V +I S+ +
Sbjct: 59 AKQEAESANQAKSGFLANMSHEIRTPMNAIIGM-AYLALDTQLSEKQRDYVEKIHYSAQS 117
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SKVE+GK+ELEN +F+ LE LV++ S S N+E + D+ +P
Sbjct: 118 LLGIINDILDFSKVEAGKLELENKQFNFNHFLENLVNLISGLASERNIEVIFDVDSQLPD 177
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD-TSKNTAEFPTDRKKFGRAFR 590
GD R+ Q+ NL+NN++KF+ G +++ +D TSK+
Sbjct: 178 YFTGDALRLNQVILNLLNNALKFSMRGTVVLA-----IDLTSKHDG-------------- 218
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
DN + F + D G G+ + E++F+ F Q D STTRK GGTGL
Sbjct: 219 --------------YDN---ISFSITDNGIGMTPPQVESLFKPFTQADVSTTRKFGGTGL 261
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
GL I +TLV MGGEI V + G+ + LG +++
Sbjct: 262 GLVISKTLVELMGGEISVQSEIKKGSCFTFQVPLGVAAK 300
Score = 99.8 bits (247), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G++ILL ED PL Q VA +IL G V + DG++A+EAL
Sbjct: 455 LQGVQILLVEDNPLNQQVASQILRSNGLLVDIAADGIEALEALKH--------------- 499
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ +LMDCQMPKMDGY A IEI+K + +++PI+A+TA+ M D K
Sbjct: 500 --------KTYHGVLMDCQMPKMDGYTAAIEIKK---QPQFKDLPIIAMTANTMETDLLK 548
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GMN Y++KPI + M I +
Sbjct: 549 AKNSGMNGYISKPIAVKSMFEEIAK 573
>gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1572
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 164/284 (57%), Gaps = 41/284 (14%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQL 454
+++ L+ EL S ++ A+ +N K +FLANMSHE+ TPM AIIG+ + LK+ +L
Sbjct: 817 INESKALQRELASAIEI---ADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKT--EL 871
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
T +Q+S + + +S+ +LL ++N ILD SK+E+GK+++E +F L+ LE++++ ++
Sbjct: 872 TKQQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIINFVGIKV 931
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+ +E + D+ IP ++GDP R+ QI +NL NN++KFT G +II E L
Sbjct: 932 AEKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEKL----- 986
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
D+++ L F V DTG G+ + + +F++F
Sbjct: 987 ------------------------------TDDEVTLKFSVTDTGIGMTAEQQQGLFKAF 1016
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
Q D STTRK+GGTGLGL+I + L + MGGEI V + + G++
Sbjct: 1017 SQADASTTRKYGGTGLGLAICKNLADLMGGEIGVSSEVNKGSIF 1060
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 31/162 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++L+AED L Q + ++L G T + +G + ++ L +
Sbjct: 1229 LAGAKLLVAEDNDLNQELIVELLSSNGITPVLANNGQEVLDFLEQ--------------- 1273
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES-EHGARNIPIVALTAHAMNADEK 1065
+FD +LMDCQMP MDGY AT IR +E EH +P++A+T +AM D +
Sbjct: 1274 --------EQFDGVLMDCQMPIMDGYTATRRIRDNEQFEH----LPVLAMTENAMAGDRE 1321
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILR-LTKNMP--SEATGTT 1104
+ L GMN ++ KPI+ + + +TI + +T P +E T T+
Sbjct: 1322 RALESGMNDHIPKPINVDELFTTIAKWVTPKHPQVAEVTDTS 1363
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LE +R+LL ED + + +L + V DG++AV ML A +
Sbjct: 1082 LEDVRVLLVEDNANSREILLAMLASLNVQVECAEDGVEAVA----MLKAS--------EA 1129
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK---SESEHGARNIPIVALTAHAMNAD 1063
SP + L L+D +MPK+DG I++ S + H +V +TA+
Sbjct: 1130 SP--------YQLALLDWKMPKLDGIGVAKFIKQLPESITPH------VVMVTAYGKEEL 1175
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
+ V ++A LTKP+ + +L P + T ++
Sbjct: 1176 LLDAVDVPIDAVLTKPVTQSTLWDALLPALGFAPRKLTSFSK 1217
>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1782
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 38/323 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ +L +Q + V +I+++S +
Sbjct: 1032 AKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ELDKKQKNYVEKIERASQS 1090
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++++ F L LE+L DMFS + ++ +E + ++ N+PR
Sbjct: 1091 LLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPR 1150
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ NL+NN+IKFT G +++ S + E
Sbjct: 1151 YLLGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLSLVE-------------- 1187
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++D+ + L F V D+G G+ + + +F+SF Q D STTRK+GGTGLG
Sbjct: 1188 ------------QQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLG 1235
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG+I V + G+ + L S K + + + V++ +
Sbjct: 1236 LAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKLVLEQELEGMSVLVVDDNAT 1295
Query: 712 ERMIISQWLRKK--KVSTLETSE 732
R I+ L +V T+ + E
Sbjct: 1296 ARDIMRTTLESMGFRVDTVRSGE 1318
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 26/143 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G RILL ED + VA + LE+VG +S+ +G A++ L++
Sbjct: 1434 GKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQ---------------- 1477
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FDL+LMDCQMP MDGY+AT IRK N+P+VA+TA+AM D C+
Sbjct: 1478 -------HFDLVLMDCQMPVMDGYQATQAIRKRPE---LANLPVVAMTANAMAGDRDMCI 1527
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GMN ++ KPI+ + T+L+
Sbjct: 1528 RAGMNDHIAKPIEVNVLYQTLLK 1550
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 27/148 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEG+ +L+ +D + + LE +G V V G +A+ R LLQ
Sbjct: 1282 LEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS-------------RCLLQA 1328
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEAT---IEIRKSESEHGARNIP-IVALTAHAMNA 1062
+++ L+D +MP MDG E +S+S+ ++ P I+ ++AHA
Sbjct: 1329 ----------YEVALIDWKMPNMDGLETARQIQLQAQSQSQSQPQSQPKILMVSAHADRE 1378
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ + + Y++KPI + R++ I+
Sbjct: 1379 FLTQIEQLALAGYISKPISASRLLDGIM 1406
>gi|78355591|ref|YP_387040.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|78217996|gb|ABB37345.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 981
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 177/337 (52%), Gaps = 43/337 (12%)
Query: 392 LTNGVSKEM-KLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-L 448
+ N SK + KL AE L+ AR AE ++ K F+A+MSHELRTPM AIIG++EI L
Sbjct: 236 MLNDHSKHLEKLVAERTQELEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIAL 295
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
K++ + +Y T+ I+ S+ +LL ++N ILD+SK+E+ KMELE+ F Q+ LEE+ D
Sbjct: 296 KTELTVKQREYLTI--IRSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTD 353
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+F + VE VLD+ ++P + GDP R+ Q+ NL+ N+ KFT G + IR
Sbjct: 354 LFRERVGMKGVELVLDIEADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIR----- 408
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
A+ R + + L F V DTG GI +
Sbjct: 409 ------------------------------VAVGSRSQDVVQLEFSVRDTGLGIGEEARN 438
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL---YLLLG 685
+F++F Q + ST R GG+GLGLSI R LV MGG I V + G+ + + L
Sbjct: 439 RLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTITVASEPGKGSDFRFTGRFSLPV 498
Query: 686 ASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRK 722
+ E++ + P V+L R+++++ L +
Sbjct: 499 EAVEARHHRTGEAPRGRVLLVEDNESNRLVMTRMLER 535
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R + + + R +G+R LL ED + + VA +L+ +G +V G +A+ L
Sbjct: 632 RGEMTPEEQTDTAMIRQFDGMRALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVL 691
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ + E P P FD++ MD QMP MDG EAT IR+ R+
Sbjct: 692 DDV-----------------EPPSGPGFDVVFMDIQMPVMDGIEATRVIRQHPR---WRH 731
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
IPI+A+TAH M+ D K L GMN Y+TKP+D ++ + R
Sbjct: 732 IPIIAMTAHVMSEDRDKALEAGMNDYVTKPVDRMMLLQVLQR 773
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 26/155 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED ++V ++LE++G + DG A E L R A
Sbjct: 515 RVLLVEDNESNRLVMTRMLERLGYDCDALQDGYTAYERLKRQAAL--------------- 559
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DLIL+D ++P +DG E ++R + P+ +TA A+ ++ +
Sbjct: 560 ------YDLILLDWRLPGVDGLEVLEKLRAEKQPLP----PVFMMTAFGREAELERAEEL 609
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNM-PSEATGTT 1104
G+ ++L+KP+ + I + M P E T T
Sbjct: 610 GVASFLSKPVKLSSLSDAIRAMRGEMTPEEQTDTA 644
>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 876
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 164/324 (50%), Gaps = 46/324 (14%)
Query: 353 IIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDA 412
I P ++ ER + L I++SA + + L N V E +LR ++S
Sbjct: 155 IWPTHWVTLSEGERYWLRLGIILSAGLFAV---TTFALFFVNRVLVEKRLRRAVLS---- 207
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
AE ++ KS+FLANMSHE+RTPM ++ + L D +L EQ + S+ L
Sbjct: 208 ---AEEASLAKSEFLANMSHEIRTPMNGVL-GMLGLLLDTRLAAEQRDYAETARASAMTL 263
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L ++N ILDLSKVE+G+M E FDL+ +E++ D +V + +E ++ P
Sbjct: 264 LDIINDILDLSKVEAGQMAFEPVAFDLRSAIEDVFDQLAVLAAPKALELIVRYDPETPSR 323
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ GD GR+ Q+ NL+ N+IKFT GH+ +R E LD
Sbjct: 324 IVGDAGRIRQVLVNLVGNAIKFTQRGHVQLRATSEELD---------------------- 361
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
D + L V+DTG GI +S+ E +F+ F Q D S+TR HGGTGLGL
Sbjct: 362 -------------DGSVDLKLSVEDTGPGISESEREQIFDKFRQLDVSSTRVHGGTGLGL 408
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGT 676
+I R LV+ MGGEI + + G+
Sbjct: 409 AICRALVHGMGGEIGLESRRGEGS 432
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 24/157 (15%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
S S N + ++ R+L+ ED + Q VA ++L +G V V +G +A++ ++++
Sbjct: 610 SDHTPSGNWRPLIASARVLVVEDNVVNQKVARRMLSHLGCRVDVAGNGREALQLIDQV-- 667
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
+DL+ MD QMP+MDG+ AT +R G R +PI+A
Sbjct: 668 ---------------------PYDLVFMDVQMPEMDGFAATAAVRARPPTDGKR-LPIIA 705
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+TA AM+ D ++CL GM+ Y++KPI E + +L+
Sbjct: 706 MTARAMSGDRERCLAAGMDGYVSKPIVQEHLGEILLQ 742
>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 194/375 (51%), Gaps = 36/375 (9%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
++ + VIG + IL + +K+ + + +AEA++ KSQFLA +SHE+
Sbjct: 330 LTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVAKSQFLATVSHEI 389
Query: 435 RTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM I+G+L +L +D T + Y+ Q AL+ L+N +LD +K+E+GK+ELE
Sbjct: 390 RTPMNGILGMLALLLDTDLSSTQKDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLELE 447
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FD++ L++++ +FS + +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 448 AVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVK 507
Query: 554 FTSSGHIIIR-GWCENLDTSKNTAEFP--TDRKKF---GRAFRTKLKQQA----NNAMNF 603
FT GHI ++ EN S ++ +D F GR F+T ++A N+ NF
Sbjct: 508 FTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLDGREFQTLSGREAADDQNSWDNF 567
Query: 604 R----EDN------------------KLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ +DN + L V+DTG GI VF F Q D ST
Sbjct: 568 KHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGILLHAQNRVFTPFMQADSST 627
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 701
+R +GGTG+GLSI + LV MGG+I + + G+ + G ++ + D PN+
Sbjct: 628 SRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKN-SMNDMKKPNS 686
Query: 702 VVVLATVGSMERMII 716
+ + M+ +++
Sbjct: 687 EELPPSFRGMKAIVV 701
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S+ + +L G RIL+ +D + + VA L+K GA V G A++ L
Sbjct: 836 NGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLL-------- 887
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE---------HGAR 1048
+ P FD MD QMP+MDG+EAT IR E E G R
Sbjct: 888 ------------QLPHN--FDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLSATEGKR 933
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
IPI+A+TA ++A ++CL GMN Y++KP + E + + R K
Sbjct: 934 PIPILAMTADVIHATYEECLKCGMNGYVSKPFEEENLYKEVARFFK 979
>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
5692]
gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
5692]
Length = 1316
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 147/265 (55%), Gaps = 38/265 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE +N KS FLANMSHE+RTPM AI+G+L ++K L+ +Q + + ++ S+
Sbjct: 695 EAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQT-HLSAKQANYMDKVHTSTE 753
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK++LE TEFD++ E+ + ++ ++ + DL N P
Sbjct: 754 ALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKGIVLNFDLDLNAP 813
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GD R+ Q+ NL+ N+IKFT GHI
Sbjct: 814 ERFVGDAMRLRQVLINLVGNAIKFTEHGHI------------------------------ 843
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
Q + + + FEV+DTG GI + E +F++F Q D STTR+ GGTGL
Sbjct: 844 -----QVTQRLTQWVEAQAECIFEVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGL 898
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPG 675
GL+I + LV MGGEI + +++PG
Sbjct: 899 GLAISKRLVEMMGGEIGL--QSTPG 921
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 26/155 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ ED L Q VA +ILE+ G V++ G +A+E LAAE +
Sbjct: 1088 VLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALE-----LAAEHA------------- 1129
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRK---SESEHGARNIPIVALTAHAMNADEKKCL 1068
FD++LMD QMP MDG + T E+R+ +H +N+P++A+T HAM +D+ +CL
Sbjct: 1130 -----FDVVLMDIQMPGMDGLQTTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCL 1184
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ ++ KP +++ +T+ R + + G+
Sbjct: 1185 AAGMDDFIAKPFRIDQLFATLQRWLPALAPQEKGS 1219
>gi|425744147|ref|ZP_18862207.1| GHKL domain protein [Acinetobacter baumannii WC-323]
gi|425491535|gb|EKU57816.1| GHKL domain protein [Acinetobacter baumannii WC-323]
Length = 936
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 151/268 (56%), Gaps = 41/268 (15%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYAENIPQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGD 638
D+++ C F V D+G G+ + + +FESF QGD
Sbjct: 434 ------------------------DDEIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGD 469
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
S TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 470 ASVTRQFGGTGLGLAISKQLVHLMHGQI 497
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 20/150 (13%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + +S
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQKS---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES--EHGARNIPIVALTAHAMNADEK 1065
P FDL+ MD QMP M G + T IR ES ++G + +PI+ALTAHA+ +++
Sbjct: 711 -------PPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDNGMQ-LPIIALTAHALADEKQ 762
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
K L VGMN Y+TKPI E+++ + TKN
Sbjct: 763 KLLKVGMNDYVTKPIQMEQIIQILTHWTKN 792
>gi|389709421|ref|ZP_10186814.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
gi|388610222|gb|EIM39351.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
Length = 936
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + +++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETALFDLEEAIFDVMDMLSPLAAQKHIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DN+P+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 388 AFYYADNVPKCVNGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 473 TRQFGGTGLGLAISKQLVSLMHGQI 497
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL IL +D IV +L ++ T + G +A++ + + R L
Sbjct: 662 QGLHILAVDDHLPNLIVLEALLGELNVTTTKATSGQEAIDIIQK-------RHEEGLSA- 713
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
FDL+ MD QMP M G + T IR ES R +PI+ALTAHA++ +++K
Sbjct: 714 ---------FDLVFMDIQMPVMSGMDTTRAIRSLESTFENHRRLPIIALTAHALSDEKQK 764
Query: 1067 CLGVGMNAYLTKP 1079
L GM+ Y+TKP
Sbjct: 765 LLQGGMDDYVTKP 777
>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
Length = 632
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 158/274 (57%), Gaps = 37/274 (13%)
Query: 408 SHLDARR-KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
+ L+A R +AE +N KS+FLA MSHE+RTPM IIG+ +L +D L +Q V I
Sbjct: 228 TELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLL-NDTDLDPQQKEFVEIID 286
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
SS++L+ +++ ILD SKVE+GK+ELE T +DL++ L++++ + SV+ N++ + D+
Sbjct: 287 SSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSDID 346
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
++P V+GD R+ Q+ +NL++N+IKFT GH+ + LD TA
Sbjct: 347 PHLPMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDG--ETAH--------- 395
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ F V D+G GI + + +FE F+Q D STTRK+G
Sbjct: 396 ------------------------IRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYG 431
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GTGLGL+I LVN MGGEI++ + G+ +
Sbjct: 432 GTGLGLAIAAQLVNLMGGEIQLTSELGLGSCFEF 465
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 25/134 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ EDT + Q V +LEK+G VSV G +A++
Sbjct: 505 VLVVEDTIVNQKVVRIMLEKLGVRVSVANHGEEALQLC---------------------- 542
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
D FDLI MDCQMP MDG+ AT IRK E G +++PI+AL+A+ + D++ C VG
Sbjct: 543 -DQQPFDLIFMDCQMPVMDGFIATERIRKM-GEWG-KHVPIIALSANVIKEDQQHCFDVG 599
Query: 1072 MNAYLTKPIDSERM 1085
MN ++ KP+ R+
Sbjct: 600 MNEFVAKPVTKTRL 613
>gi|424056899|ref|ZP_17794416.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
gi|407440432|gb|EKF46949.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
Length = 935
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 269 LEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 328
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 329 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAM 388
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+DNIP+ V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 389 AFYYADNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIG--------- 439
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 440 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
T + GGTGLGL+I + LV+ M G+I
Sbjct: 474 THQFGGTGLGLAISKQLVHLMHGQI 498
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDL+ MD QMP M G + T IR ES G +PI+ALTAHA+ +++K L VGMN Y
Sbjct: 713 FDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDY 772
Query: 1076 LTKPIDSERMVSTILRLTKN 1095
+TKPI E+++ + + TKN
Sbjct: 773 VTKPIQMEQIIQILTQWTKN 792
>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
Length = 781
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 151/270 (55%), Gaps = 38/270 (14%)
Query: 410 LDARR---KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
++ RR + +A+N KSQF+A MSHE+RTPM +IG++E+L+ D L + Q + I
Sbjct: 251 IETRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLR-DTPLNDSQKHYLDVIF 309
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
+S +LL ++N ILD SK+E+GKM LEN +FDL + L + V +FS ++E V +S
Sbjct: 310 RSGESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAIS 369
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
P +RGDP R+ QI NLI N+ KFTS+GH+++ ++L T+E P R
Sbjct: 370 PETPTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMV--LVKSL--QDRTSEHPLLR---- 421
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
F + D+G GI + +F++F Q D STTR++G
Sbjct: 422 --------------------------FSIVDSGIGISKEIQRNLFQAFNQADTSTTRRYG 455
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
GTGLGL+I + L MGG I V + G+
Sbjct: 456 GTGLGLAICKQLAELMGGTIGVESEYGKGS 485
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 21/138 (15%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ L +L+AED + ++V +L K DG +AV A
Sbjct: 653 QKLNVLVAEDNAVNRMVIEGLLNKHEIEPVFAEDGQEAVTAF------------------ 694
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
ET +PRFDLI MDC+MP MDG+EAT +IR+ E +PI+ALTAH ++
Sbjct: 695 --ETA-SPRFDLIFMDCEMPNMDGFEATEKIREYEKNRALTPMPIIALTAHVEAEHRQRV 751
Query: 1068 LGVGMNAYLTKPIDSERM 1085
VGMN YLTKP+ +++
Sbjct: 752 FNVGMNYYLTKPVTMDKL 769
>gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
Length = 878
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 159/288 (55%), Gaps = 37/288 (12%)
Query: 393 TNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
N V +EM+ + E I H A+ A ++N KS FLANMSHE+RTP+ I+G+ EIL S
Sbjct: 351 VNRVVEEMQRQTEEILH--AKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQS 407
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
+L++ Q V I SS LL LLN ILDLSK+ESG++EL E D+++ + + + +F
Sbjct: 408 ELSSHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQS 467
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ ++ ++ ++L++NIP V D RV Q+ +NL++N++KFT SGH+ + E L
Sbjct: 468 KATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCVDVSYEEL--- 524
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
E + L F+V+DTG GIDQ K T+FE
Sbjct: 525 -------------------------------LEKERGVLTFKVEDTGIGIDQDKLTTIFE 553
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D +R+ GGTGLGL+I LV+ MGG++ GT +
Sbjct: 554 PFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKLVATSTKGVGTCFEF 601
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 106/227 (46%), Gaps = 37/227 (16%)
Query: 869 TNEGNGEEIRGSIA-NYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMF---RERHQ 924
+N+ N +EI +++ NY ++ C S+ P E++ + ++ F R +H
Sbjct: 669 SNDANTDEILDNLSFNYDL---RRVIICQHHLST--PYENAEKVHAVLTLPFLGNRFKHV 723
Query: 925 IGS-SRRDQPCSSSNSSSNQKRI-----LEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
I ++ ++ SS N ++N R RIL+AED + Q +A L+K G +
Sbjct: 724 IDDLAKVEKTISSDNVTNNVVRSEYRASRSHRRILIAEDNLMNQKIASFFLDKAGYDYLI 783
Query: 979 VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEI 1038
+G +A+EA+ + FD ILMDC MP MDG AT EI
Sbjct: 784 TSNGQEALEAITK----------------------GEEFDAILMDCMMPVMDGLTATKEI 821
Query: 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
R+ E + G I+ALTA + D C GM+AYL KP S ++
Sbjct: 822 RRWEKKAGREKTMIIALTASVLEEDIHNCFAAGMDAYLPKPYKSNQL 868
>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
Length = 1041
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 177/322 (54%), Gaps = 24/322 (7%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I ASV +LVI + I +++ K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 392 IIASVGVLVITLLLGHIFHAAINRIAKVERDYREMMALKHRAEAADIAKSQFLATVSHEI 451
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L + L +Q S L+ L+N +LD +K+ESG++ELE
Sbjct: 452 RTPMVGVLGMLQMLMGTN-LDVKQLDYAETAHASGKDLISLINEVLDQAKIESGRLELEA 510
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ +L+++V + S + ++E + +SD +P V GDPGR QI +NL+ NSIKF
Sbjct: 511 VPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVPEVVIGDPGRFRQIITNLVGNSIKF 570
Query: 555 T-SSGHIIIRGWCEN------------------LDTSKNTAEFPTDRKKFGRAFRTKLKQ 595
T GHI + + L ++TA F T F R + +
Sbjct: 571 TKDKGHIFVSVHLADEVKSPLDIKDEVLKQSLTLIQDRSTASFNT-LSGFPVVDRWRSWE 629
Query: 596 QANNAMNFREDN-KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ N E++ K+ L V+DTG GI + +F F Q D ST+RK+GGTG+GLSI
Sbjct: 630 KFKNLSGMPEESKKIKLLVTVEDTGDGIVYDAQDRIFTPFVQADSSTSRKYGGTGIGLSI 689
Query: 655 VRTLVNKMGGEIKVVKKNSPGT 676
+ LV+ +GGEI V + PGT
Sbjct: 690 SKRLVDLVGGEIGFV--SEPGT 709
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 41/191 (21%)
Query: 922 RHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
+ IG R Q S+ S+ +L+G R+L+ +D P+ + VA L K GA V+
Sbjct: 874 QESIGFGRTRQVTRSNPSTIGN--LLKGKRMLVVDDNPVNRKVAELALRKYGAVVTCEAS 931
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G A++ L P + FD MD QMP+MDG+EAT +IR
Sbjct: 932 GEAALQRLK----------------PPHD------FDACFMDLQMPEMDGFEATQKIRHL 969
Query: 1042 ESEHGAR-----------------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER 1084
E E+ + PI+A+TA + A +KC GM+ Y++KP D E+
Sbjct: 970 EREYNENVKSGEIGTDKSTDEAYWHTPILAMTADLIQATNEKCRKCGMDGYVSKPFDDEQ 1029
Query: 1085 MVSTILRLTKN 1095
+ S + K+
Sbjct: 1030 LYSAVAPFFKS 1040
>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 162/305 (53%), Gaps = 31/305 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
++ + VIG + IL +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 254 LTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 313
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM I+G+L +L D L++ Q + AL+ L+N +LD +K+E+GK+ELE
Sbjct: 314 RTPMNGILGMLALLLDTD-LSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEA 372
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
F+L+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+KF
Sbjct: 373 VPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQIITNLVGNSVKF 432
Query: 555 TSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN---KLAL 611
T GHI ++ L + M+ + + K+ L
Sbjct: 433 TERGHIFVQ---------------------------VHLAEHTKALMDAKAETSSEKVTL 465
Query: 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
V+DTG GI VF F Q D ST+R +GGTG+GLSI + LV MGG+IK + +
Sbjct: 466 MVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISR 525
Query: 672 NSPGT 676
G+
Sbjct: 526 PQIGS 530
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 38/185 (20%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N S+ + +L G +IL+ +D + + VA L+K GA V G A++
Sbjct: 673 KRQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQL 732
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE---- 1044
L + P FD MD QMP+MDG+EAT IR ES+
Sbjct: 733 L--------------------QLPHN--FDACFMDIQMPEMDGFEATRRIRLIESKANEQ 770
Query: 1045 ------------HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
G ++PI+A+TA ++A KCL GM+ Y++KP + E + + +
Sbjct: 771 MNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKF 830
Query: 1093 TKNMP 1097
K+ P
Sbjct: 831 FKSKP 835
>gi|392423698|ref|YP_006464692.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391353661|gb|AFM39360.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 914
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 176/333 (52%), Gaps = 40/333 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KSQFLANMSHE+RTPM IIG +E+L S L EQ S + ++K S+ ALL L+N I
Sbjct: 397 NVAKSQFLANMSHEIRTPMNGIIGYIELL-STMPLEKEQASYIAEVKASTDALLVLINDI 455
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+GKM ++N FDL K +E+ V +FS + + +E + +++ +P V+GDPGR
Sbjct: 456 LDYSKIEAGKMFIDNAPFDLYKLIEDSVSLFSPKAHSKGIEILSFIAEGVPSQVQGDPGR 515
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ +N+I N++KFT G + ++ T LK+
Sbjct: 516 LRQVLNNIIGNAVKFTDKGEVTLK--------------------------ITALKEI--- 546
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++K+ L ++ DTG GI + + +F+ F Q D STTRK+ GTGLGL+I R ++
Sbjct: 547 ------EDKVLLQIDIKDTGIGISEEDMKCLFQVFTQADASTTRKYEGTGLGLAISRRIL 600
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESK---QIYDADFPNTVVVLATVGSMERMII 716
MGG I V + G+ L L + SE K + +++ RMI
Sbjct: 601 ELMGGSITVNSELGRGSTFTLTLEM-EKSEIKVEDDLQSTSLEGLNLLIVDDNESNRMIF 659
Query: 717 SQWLRKKKVSTLETSEWHGLTQILRELLDPISP 749
++L++ + + +IL+ L D P
Sbjct: 660 REYLKETNCKVMSVNNGREGLEILKGLGDENLP 692
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 26/142 (18%)
Query: 939 SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESS 998
++ N K++ + L ILL ED + Q + +L+++G + ++ +G QAVE
Sbjct: 781 TAENYKQMAD-LSILLVEDKEVNQRIELIMLKRLGYSANIAVNGKQAVELC--------- 830
Query: 999 RRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
DT ++D+I MDCQMP MDGYEAT IRK S + ++ PI+A+TAH
Sbjct: 831 --------------DTRKYDIIFMDCQMPVMDGYEATDRIRKMSSLN--KHSPIIAMTAH 874
Query: 1059 AMNADEKKCLGVGMNAYLTKPI 1080
AM D ++C+ GM+ Y++KP+
Sbjct: 875 AMEGDRERCVAAGMDDYISKPV 896
>gi|441499272|ref|ZP_20981458.1| hypothetical protein C900_03848 [Fulvivirga imtechensis AK7]
gi|441436805|gb|ELR70163.1| hypothetical protein C900_03848 [Fulvivirga imtechensis AK7]
Length = 799
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 155/291 (53%), Gaps = 39/291 (13%)
Query: 393 TNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL-KSD 451
T ++K ++ ELI +A++ AE S K QFLANMSHE+RTPM AIIG +L K
Sbjct: 254 TQDINKRKQVEQELI---EAKKMAEESGRVKEQFLANMSHEIRTPMNAIIGFANLLLKEK 310
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D T EQ + I S LL ++N ILD SK+ESGK ELEN +F L + + ++ +F
Sbjct: 311 DAFTPEQRKYINAIHNSGENLLVIINDILDFSKIESGKFELENVDFILPQVVSNVLHLFK 370
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ +++ + ++ ++P ++ GDP R+ Q+ NLINN+IKFT GH+ ++ D+
Sbjct: 371 HKVVEKDIKLLHEIGKDVPHHLVGDPVRLNQVLVNLINNAIKFTEKGHVKLKVEKLKKDS 430
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+K + F V DTG GI K E++F
Sbjct: 431 -----------------------------------DKALIRFSVQDTGIGIPSDKLESIF 455
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
+SF Q TTRK+GGTGLGL+IV+T+V GEI V + G + L
Sbjct: 456 DSFTQASSDTTRKYGGTGLGLTIVKTIVELQQGEISVQSQLGEGATFTIDL 506
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 24/158 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G+++L+AED + Q +A I E +G + + +G+ A+E L
Sbjct: 532 LKGVKVLMAEDNEINQELAKFIFEDLGWALDIAENGIVALEKLRE--------------- 576
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++D++LMD QMP+MDGY+AT++IR ++ + IPI+A+TAHA+ ++ +K
Sbjct: 577 --------NKYDIVLMDIQMPEMDGYQATLKIR-NDFDPPLSQIPIMAITAHALKSEVQK 627
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
CL GM+ Y++KP E + + L +N G T
Sbjct: 628 CLDAGMDDYISKPFQVEELARKVATLVRNNEEHLEGET 665
>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
Length = 641
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 165/293 (56%), Gaps = 40/293 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS +
Sbjct: 233 ARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDEQQKDFVSIINSSSNS 291
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 292 LMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPL 351
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+GD GR+ Q+ SNL++N++KFT GH+ + +
Sbjct: 352 EVKGDMGRLKQVLSNLLSNAVKFTERGHV--------------------------KLMVS 385
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++ ++A+ A + F V D+G GI + +TVFE F+Q D STTRK+GGTGLG
Sbjct: 386 QVSREADVA---------GVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLG 436
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE---SKQIYDA-DFPN 700
L+I +LV MGGEI++ + G+ + + L S+ S Q + DFPN
Sbjct: 437 LAICSSLVEVMGGEIRLTSEPGLGSYFEFTIPLNIVSDKSISPQTPNVFDFPN 489
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGEDALRQCQ--------------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
T +FDLILMDCQMP MDG+ AT IRK E G + +PI+AL+A+ + D+++C G
Sbjct: 550 --THQFDLILMDCQMPVMDGFIATENIRKM-GEWG-QQVPIIALSANVIKEDQQRCFDAG 605
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 606 MNEFVAKPVTKERLQQIFERYLPESLQTRSNPKQAT 641
>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
Length = 632
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 168/297 (56%), Gaps = 41/297 (13%)
Query: 408 SHLDARR-KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIK 466
+ L+A R +AE +N KS+FLA MSHE+RTPM IIG+ +L +D L +Q V I
Sbjct: 228 TELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLL-NDTDLDPQQKEFVEIID 286
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
SS++L+ +++ ILD SKVE+GK+ELE T +DL++ L++++ + SV+ N++ + ++
Sbjct: 287 SSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNLQLLSNID 346
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
++P V+GD R+ Q+ +NL++N+IKFT GH+ + LD TA
Sbjct: 347 PHLPIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDG--ETAH--------- 395
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ F V D+G GI + + +FE F+Q D STTRK+G
Sbjct: 396 ------------------------IRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYG 431
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA----SSESKQIYDADFP 699
GTGLGL+I LVN MGGEI++ + G+ + + + S+ + Q+ DFP
Sbjct: 432 GTGLGLAIAAQLVNLMGGEIQLTSELGLGSCFEFSIPVAVINAQSTYTDQLNVLDFP 488
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 25/134 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ EDT + Q V +LEK+G VSV G +A++
Sbjct: 505 VLVVEDTIVNQKVVRIMLEKLGVRVSVANHGEEALQLC---------------------- 542
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
D FDLI MDCQMP MDG+ AT IRK E G +++PI+AL+A+ + D++ C VG
Sbjct: 543 -DQQPFDLIFMDCQMPVMDGFIATERIRKM-GEWG-KHVPIIALSANVIKEDQQHCFDVG 599
Query: 1072 MNAYLTKPIDSERM 1085
MN ++ KP+ R+
Sbjct: 600 MNEFVAKPVTKTRL 613
>gi|392550335|ref|ZP_10297472.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
spongiae UST010723-006]
Length = 965
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 159/280 (56%), Gaps = 36/280 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE +N KS+FLA+MSHE+RTPM ++G+L +L + +L+ EQ V S+ A
Sbjct: 423 AKHQAENANKAKSEFLASMSHEIRTPMNGVLGMLNLLLTS-ELSKEQLHRVNVAISSANA 481
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL LLN ILD SK+++GK+ELE+ EFDL+ L E + ++Q ++E +LD++ +
Sbjct: 482 LLNLLNDILDFSKIDAGKLELESIEFDLRTLLGEFAEAAAIQAHQKSLELILDITKVNAQ 541
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R+ QI NL+ N+IKFT+ G ++I+
Sbjct: 542 TVMGDPNRLRQILYNLVGNAIKFTAHGEVVIKA--------------------------- 574
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
A+ +K L EV+DTG GI + +F++F Q D STTRK+GGTGLG
Sbjct: 575 --------ALELTGSDKYILNCEVNDTGIGISAQQQSKLFKTFSQVDASTTRKYGGTGLG 626
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
L+IV+ L MGG I+V G+ + L+LG SS +K
Sbjct: 627 LAIVKQLCELMGGSIEVNSLEGKGSSFKFSLVLGCSSGTK 666
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 22/145 (15%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAA 995
+++++ Q + + +++LLAED + QIVA L K+G T + + +G +A+ LN
Sbjct: 823 THATNEQVKWAKNIKLLLAEDNQVNQIVAKSTLAKLGLTDIKIASNGQEALTILN----- 877
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
E+ D+ F ILMDCQMP++DGY+AT IR ++ IPI+A+
Sbjct: 878 --------------ESEDS--FTAILMDCQMPELDGYDATKAIRNGKAGKHNTRIPIIAM 921
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPI 1080
TA+AM D +KC+ GM+ Y+TKPI
Sbjct: 922 TANAMVGDREKCIAAGMDDYITKPI 946
>gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
Length = 939
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QLTN Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLTNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q LEE+V + + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 SGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDIS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+LK Q +++++ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VELKSQ--------KEDRVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV +MGGEI + + G+
Sbjct: 483 GLVITQKLVGQMGGEISLTSRLHQGS 508
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 942 NQKRILEGLRILLAEDTP--LIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
++K++L+ L E P L ++ + EK TV V D ++ + +L+
Sbjct: 635 SRKKLLQSL----VEKQPAILAPVMEVESTEKRALTVMAVDDNPANLKLITALLSERVES 690
Query: 1000 RRSLLQGSPS-ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
S G S E FD++ MD QMP MDG A I++++ P+VA+TAH
Sbjct: 691 VVSCTNGQVSVEKAQEQHFDMVFMDIQMPHMDGVTACKLIKETQQN---SQTPVVAVTAH 747
Query: 1059 AMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
AM + + L GM+ YLTKPID E+M+ +L
Sbjct: 748 AMTGERDRLLSEGMDDYLTKPID-EKMLLQVL 778
>gi|417318936|ref|ZP_12105494.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
10329]
gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
10329]
Length = 932
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 519
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLKERV-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E +N P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KNTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 794
>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1154
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 152/246 (61%), Gaps = 23/246 (9%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KSQFLANMSHE+RTPM AIIG+ +L + +LT Q V + SS ALL ++N ILDL
Sbjct: 434 KSQFLANMSHEIRTPMNAIIGMTGLLL-NTELTPLQRDFVETTQTSSDALLTIINDILDL 492
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESGK+ELEN F+L+ +EE +D+ + + + N+E V +S +P + GD R+ Q
Sbjct: 493 SKIESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELVCLISPQVPIIIWGDSTRLRQ 552
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NL++N+IKFT G I++ S N EF ++ KL ++ +N +N
Sbjct: 553 ILVNLLSNAIKFTEKGEILL---------SVNAQEFEKNK---------KLSKKLDNNLN 594
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
++++ F V D+G GI + + +F+SF Q D STTR +GGTGLGL+I + L M
Sbjct: 595 ----RQISIQFAVKDSGIGIPADRMDRLFKSFSQVDSSTTRHYGGTGLGLAISKQLSEMM 650
Query: 663 GGEIKV 668
GG++ V
Sbjct: 651 GGQMWV 656
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 881 IANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSS 940
+ + + S+ ++K F P + S LIH + + Q+ SSR P
Sbjct: 824 LTSLNGSESPNYQKVDFAAFLTKPVKQSHLYNLLIHILSEQPVQVKSSRTAAP------K 877
Query: 941 SNQKRILE-GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
NQ E LRILL ED + Q VA IL+++G + +GL+A+ AL R
Sbjct: 878 INQHLAEELPLRILLTEDNVVNQKVALHILKRMGYEADIANNGLEALVAL---------R 928
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEI-RKSESEHGARNIPIVALTAH 1058
R+S +D++LMD QMP+MDG AT +I ++ SE R I+A+TA+
Sbjct: 929 RQS--------------YDVVLMDMQMPEMDGLTATRQICQEWSSEERPR---IIAMTAN 971
Query: 1059 AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
AM D + CL GM+ Y++KPI + ++ L+K P T +
Sbjct: 972 AMQGDRELCLNAGMDDYVSKPIRVDVLIEA---LSKCQPKVKTNS 1013
Score = 45.4 bits (106), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KCLGVGMNAY 1075
FDL ++D QMP MDG EIRK + + +P+V LT ++N E V A+
Sbjct: 789 FDLAILDMQMPDMDGLTLGKEIRKLSA---YKKLPLVMLT--SLNGSESPNYQKVDFAAF 843
Query: 1076 LTKPIDSERMVSTILRLTKNMP 1097
LTKP+ + + ++ + P
Sbjct: 844 LTKPVKQSHLYNLLIHILSEQP 865
>gi|392308226|ref|ZP_10270760.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea
NCIMB 1889]
Length = 1319
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 42/311 (13%)
Query: 383 VIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
V G + +L+ V++ +L EL+S D A+ S K +FLANMSHE+RTPM AII
Sbjct: 557 VAGIVGMLL---DVTQRNELERELVSSKDL---ADRSARVKGEFLANMSHEIRTPMNAII 610
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G+ + S D L +Q++ V +I ++ LL L+N ILD SK+++GK+ELE+T+F+L +
Sbjct: 611 GMAHLALSTD-LNPKQHNYVSKIDVAAKQLLHLINDILDFSKIDAGKIELEHTKFELDQL 669
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
L+ ++ + SV+ +E + D+ + IP N+ GDP R+ QI NL N++KFT GH+ I
Sbjct: 670 LDNVMTVISVKAQEKQLELIFDVPNTIPNNLIGDPLRLGQILINLAGNAVKFTEKGHVSI 729
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
+ L+ ++ T + + F V DTG G+
Sbjct: 730 Q--IRELEQAEETTK---------------------------------ITFSVIDTGIGM 754
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
+ + + +F+SF Q D S TRK+GGTGLGL+I + LV MGGEI + G+ L
Sbjct: 755 NPQQQQKLFKSFSQADTSITRKYGGTGLGLTISQQLVKLMGGEIYIESTLGGGSTFYFTL 814
Query: 683 LLGASSESKQI 693
L ++++
Sbjct: 815 ELSRDQHTQKV 825
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 26/143 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G+ ILLAED P+ Q +A +IL GA + V DG VEAL ++ AE+
Sbjct: 974 LGGISILLAEDQPVNQEIAVEILSNYGAKIDVANDG---VEALKKI--AEN--------- 1019
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++D++LMD QMP M G +AT IRK + +G ++PI+A+TA+AM D
Sbjct: 1020 ---------KYDVVLMDMQMPNMGGIQATQAIRK-QPNNG--DLPIIAMTANAMQDDITL 1067
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
CL GMN +++KPID M+ TI
Sbjct: 1068 CLDSGMNDHISKPIDVPIMIKTI 1090
>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 847
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 181/344 (52%), Gaps = 35/344 (10%)
Query: 346 LPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAE 405
+ IV +++ P I+ +A R+ ++ SV + + I + + + E+ R E
Sbjct: 263 IAIVPLLVPPAIMIVNQAIGRSPH----VVEVSVGMTALVAIAFVRMGRMLQWEVVARRE 318
Query: 406 LISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQI 465
L + AR A ++ KS FLA MSHE+RTPM +IGL +L++ D L Q +
Sbjct: 319 LAA---ARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATD-LDERQRQYAEGV 374
Query: 466 KKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDL 525
++ AL+ ++N ILD SKVE+G+++LE +FDL + +EE+ ++ + + +E +
Sbjct: 375 SSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLELLAYC 434
Query: 526 SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 585
S +P +RGDP R+ Q+ NL +N++KFT+ G +++R E + + P +
Sbjct: 435 SPELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASLE-----ASLQDGPEAGAEA 489
Query: 586 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH 645
G R FEV DTG G++++ E +FE F Q D STTR++
Sbjct: 490 GVVVR----------------------FEVTDTGIGVEEADRERLFEPFSQADSSTTRRY 527
Query: 646 GGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
GGTGLGL+I LV MGG+I V + G+ L LG + +
Sbjct: 528 GGTGLGLAISEHLVTAMGGQIGVDSRPGLGSTFWFTLPLGLAED 571
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 31/167 (18%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
IG+ R P + + + RIL + ED + Q+VA ILE +G T V +G+
Sbjct: 707 IGTRRPHTPLHIPTTPAGRGRIL------VVEDGEINQLVAVGILEHLGYTTDVADNGVT 760
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ A+ R R+D +LMD QMP MDGY+AT EIR+ E +
Sbjct: 761 ALSAMGRT-----------------------RYDAVLMDVQMPGMDGYQATREIRRLEGD 797
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ PI+A+TA A N D +CL GM+ Y++KP++ + + + R
Sbjct: 798 --VHHTPIIAMTASATNDDRDRCLAAGMDDYISKPVNPHTLETVLSR 842
>gi|433658642|ref|YP_007276021.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
gi|432509330|gb|AGB10847.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
Length = 932
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 519
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E++ TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLKERI-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KDTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 794
>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
Length = 932
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 519
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLKERV-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KDTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 794
>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1179
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 146/269 (54%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L A+ AEA++ K FLA MSHE+RTPM IIG+ E L D +++ EQ + +K S+
Sbjct: 545 LRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTE-LALDTEMSAEQREYLNMVKSSA 603
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
ALL ++N ILD SK+ESGKMELE+ EFD++ +++ + +E V D+ I
Sbjct: 604 DALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAI 663
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + GDPGR+ Q+ +NL+ N+IKF+ G I +R
Sbjct: 664 PDLLVGDPGRLRQVLTNLLGNAIKFSEHGAITLR-------------------------- 697
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
KL Q ++ + R EV D G GI K +FE+F Q D STTRK+GGTG
Sbjct: 698 -MKLLMQTSDGLCVR--------IEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTG 748
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGL+I LV MGG++ V + G++
Sbjct: 749 LGLAISSKLVAAMGGDLSVESQVGIGSVF 777
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 24/136 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q +A +L K G V + +G++AVE R+
Sbjct: 943 LNILLAEDNRVNQKLAITLLGKWGHRVVLANNGIEAVEHAGRV----------------- 985
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD+ILMD QMP+M G EAT IR+ + G R+ IVA+TA+AM+ D ++CL
Sbjct: 986 ------DFDVILMDLQMPEMSGMEATRLIREQDQLRG-RHSRIVAMTANAMSEDRQRCLD 1038
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y+ KP+++E++
Sbjct: 1039 AGMDDYIAKPLNTEKL 1054
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+L+D + DG++ +++ + A ++ L++ ++ AD ++C G++ YL
Sbjct: 850 FDLLLLDAVLSDADGFDFAAQLQSMPQKPRAL---VMMLSSASLRADAERCRQAGISNYL 906
Query: 1077 TKPIDSERMVSTI 1089
+KPID ++ TI
Sbjct: 907 SKPIDRWELIKTI 919
>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AQ3810]
gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AQ3810]
Length = 932
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 519
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLKERV-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KDTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 794
>gi|400760181|ref|YP_006589784.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
gi|398655653|gb|AFO89622.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
Length = 759
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 174/337 (51%), Gaps = 42/337 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR+ A+ +N KS+FLANMSHE+RTPM +IG+ E++ D L +Q I KS
Sbjct: 228 EARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETD-LDEDQTMYAETISKSGS 286
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N IL+ SK+E+GKMELE F+LQ +E++V + S + + NVE L ++P
Sbjct: 287 ALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLP 346
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GD GR+ QI +N+ N++KFT G++ I + S T
Sbjct: 347 ECYEGDVGRIRQILTNVAGNAVKFTGKGYVYI-------EVSGET--------------- 384
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+D++ AL V DTG GI + + +F +FEQ D + TR + GTGL
Sbjct: 385 --------------DDDRTALRISVTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGL 430
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS-SESKQIYDA-DFPNTVVVLATV 708
GL+I L+ MGG I V + G++ + L L ++ K+ D DF ++
Sbjct: 431 GLAISTRLLELMGGRISVQSELGKGSVFTIDLPLRIRPNQPKRTQDVRDFKGLRALVVDD 490
Query: 709 GSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+ R+I+++ L V ++ H Q L LLD
Sbjct: 491 LELNRIILTERLATWGVQSVAAGSAH---QALELLLD 524
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 23/154 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+++LLAED Q+V ++L+ V + +G +AV + P
Sbjct: 629 VKLLLAEDNRTNQLVVSRMLKAAPIEVLIAANGEEAVTMFQ--------------EHHP- 673
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
D++LMD MP DG +AT EIR+ E ++G P+VALTA+A+ + ++CL
Sbjct: 674 --------DIVLMDMMMPVKDGIDATAEIRQLEKDNGLGRCPVVALTANALQSHREECLA 725
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ +L+KPI+ + ++ + + P TGT
Sbjct: 726 AGMDDFLSKPINKKALLGAVGKWVDCGPLLKTGT 759
Score = 43.1 bits (100), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
R +GLR L+ +D L +I+ + L G QA+E L SR
Sbjct: 478 RDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQALELLL------DSRH---- 527
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
D +D+IL D QMP MDG E IR R++PIV L++ D
Sbjct: 528 --------DGTHYDVILQDFQMPGMDGKELAERIRDIPE---YRDLPIVILSSVENTIDR 576
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
+ +G KP+ + ++ S + R+ + EA
Sbjct: 577 EAREHLGHCEVALKPLRAAQLQSVMSRVLETATEEA 612
>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 742
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 90 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 147
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 148 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 207
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 208 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 240
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 241 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 292
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 293 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 329
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 478 LTVLAVDDNPANLKLISALLKERV-ETVTACSNGQQAVN-----LATEK----------- 520
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 521 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KDTPVIAVTAHAMAGERDRLL 570
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 571 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 604
>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
2210633]
gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AN-5034]
gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus Peru-466]
gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus Peru-466]
gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AN-5034]
Length = 932
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 PGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDVS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ QA +++ + F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEMRSQAGDSVELQ--------FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 519
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLKERV-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQNIKELELN---KDTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GM+ YLTKPI+ + ++ N +E+ G
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTESIG 794
>gi|375146975|ref|YP_005009416.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361061021|gb|AEW00013.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1019
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 142/258 (55%), Gaps = 34/258 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSY 470
A+ AEA++ KS F+ANMSHELRTPM IIG + +L +D Q T Y + + KS+Y
Sbjct: 495 AKENAEAASKAKSDFMANMSHELRTPMNGIIGFTDLVLTTDLQKTQRDY--LKNVSKSAY 552
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ ++ FDL + +EE V++ S++ +E V + +P
Sbjct: 553 NLLNIINDILDFSKIEAGKLLIDEVPFDLSELIEETVEILSIKAEEKGLEVVCSIDPELP 612
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NL+ N++KFT+ G I +
Sbjct: 613 SQLIGDPLRIKQVLTNLMGNAVKFTAEGEIFV---------------------------- 644
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
K Q N N + + + V DTG GI K +FESF Q D STTRK GGTGL
Sbjct: 645 ---KVQPNGVHNCNGNLYMDIDITVKDTGIGIPDDKLHAIFESFTQADNSTTRKFGGTGL 701
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I ++LV MGG + V
Sbjct: 702 GLTISKSLVELMGGRLAV 719
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 25/139 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ ED P+ ++ ++L K+G V +G +A+ M+A +
Sbjct: 899 RVLVVEDEPMNMLLISEVLRKMGVEVLKAGNGKEAL----VMVAVHAP------------ 942
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
DL+ MD MP MDG+ AT +IR S + G IPI+ALTA AM D+++CL
Sbjct: 943 -------DLVFMDVNMPVMDGFAATRQIRTSTT--GLSKIPIIALTADAMEEDKERCLES 993
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMN Y++KP E + S +
Sbjct: 994 GMNDYISKPFKLEEIYSVV 1012
>gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
Length = 606
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 150/272 (55%), Gaps = 39/272 (14%)
Query: 405 ELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVC 463
EL+ L A+ +A+A+N KS FLA MSHE+RTPM I+G+L++L LT EQ + V
Sbjct: 215 ELVGTLSQAKERADAANRAKSDFLATMSHEIRTPMNGIMGMLQVLHGS-SLTVEQRAQVE 273
Query: 464 QIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVL 523
S+ +L+RLLN ILD SK+ESGK+E E+ FDL+ L ++V + + + + L
Sbjct: 274 IAGNSAESLMRLLNDILDFSKIESGKLEFESVSFDLKAALHDVVSLLRPRAAEKGLALEL 333
Query: 524 DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRK 583
L DN+P +V GD R+ Q+ NL N+IKFT G +
Sbjct: 334 HLPDNLPDHVIGDSVRLKQVLLNLTGNAIKFTEQGEV----------------------- 370
Query: 584 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 643
A R ++ Q R+ + F V DTG G+D + + +F+ F QGD S R
Sbjct: 371 ----ALRVRVSQ--------RDTTSARVGFSVRDTGIGMDDATRQKLFQLFSQGDSSMNR 418
Query: 644 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ GGTGLGL+I + L MGG+I+V ++SPG
Sbjct: 419 RFGGTGLGLAISQRLAEHMGGKIEV--RSSPG 448
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D ++MDCQ+P MDG+EAT +IR+ + R +PI+ALTA+A D C+ GM+ +L
Sbjct: 525 WDAVIMDCQLPGMDGFEATRQIRR---KLAGRPLPIIALTANARPEDRAACVAAGMDDFL 581
Query: 1077 TKPIDSERM 1085
TKP+ + +
Sbjct: 582 TKPVRQDEL 590
>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1547
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 158/308 (51%), Gaps = 34/308 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A +A+A++ KS+FLANMSHE+RTPM +IG+ +L D L Q ++ S A
Sbjct: 831 ATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETD-LNETQRRYAETVRSSGQA 889
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL LLN ILD SK+ESGK+ELE FDL+ L+ M + + +E + ++P
Sbjct: 890 LLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPD 949
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGRAFR 590
N+ GDPGR+ QI +NL+ N++KFT G +++R E+ S+ + EF
Sbjct: 950 NLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQESQEF------------ 997
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
L F V DTG GI K +F+SF Q D S TRK GGTGL
Sbjct: 998 ------------------CMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGL 1039
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTL--MQLYLLLGASSESKQIYDADFPNTVVVLATV 708
GL+I + L MGG++ V GT + L L ++E++ AD + ++
Sbjct: 1040 GLAISKQLAEMMGGDVGVDSVEGQGTTFWFTIRLALAGTAEAEVPVPADLLDVRALIVDD 1099
Query: 709 GSMERMII 716
+ R I+
Sbjct: 1100 NATNREIL 1107
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 89/199 (44%), Gaps = 66/199 (33%)
Query: 922 RHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
RH S+R ++ S S++K RILLAED Q VA +L+ G + V +
Sbjct: 1225 RH---SAREEKSRSGKIDFSDRK-----ARILLAEDNITNQQVALAMLKNFGLSADAVAN 1276
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR-- 1039
GL+A++AL T +DL+LMD QM +MDG AT IR
Sbjct: 1277 GLEAIKALK-----------------------TVPYDLVLMDVQMLEMDGLAATRRIRAA 1313
Query: 1040 --------------KSESEHGA-------------------RNIPIVALTAHAMNADEKK 1066
KSES++ + IPI+A+TAHAM D ++
Sbjct: 1314 EIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEFRIPIIAMTAHAMRGDRER 1373
Query: 1067 CLGVGMNAYLTKPIDSERM 1085
C+ GM+ YL KP++ R+
Sbjct: 1374 CMEAGMDDYLAKPVEPGRL 1392
>gi|410664806|ref|YP_006917177.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409027163|gb|AFU99447.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 798
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 151/282 (53%), Gaps = 40/282 (14%)
Query: 399 EMKLRAELISHLDARRK---AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
E L E L++ R+ AE +N KSQFLA MSHE+RTPM +IG++E+L+ D L
Sbjct: 251 ETALLTEKQQKLESERQKAVAETANRAKSQFLATMSHEIRTPMNGVIGMVELLR-DTPLN 309
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
Q + I +S L+ ++N ILD SK+E+GKMELE+ F+L+ +E+ V +F +
Sbjct: 310 ATQQHYLDVIHRSGETLIDIINDILDYSKIEAGKMELESAPFNLEDLVEDCVQLFGATAN 369
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC-ENLDTSKN 574
++E + +S P N+ GDP R+ Q+ NLI N+ KFTS G++I+ EN D +
Sbjct: 370 KRHIELIGSVSPTTPLNLMGDPTRLRQLLINLIGNAFKFTSEGYVIVEARREENSDPDQ- 428
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
PT R F + D+G GI+ +F+SF
Sbjct: 429 ----PTIR------------------------------FSIRDSGIGINDEGMARLFQSF 454
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D STTRK GGTGLGL+I + L MGGEI VV G+
Sbjct: 455 SQADSSTTRKFGGTGLGLAICKRLAEMMGGEIGVVSTEGKGS 496
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 21/150 (14%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
D + ++ N ++ L++L+AED + ++V +L K G +V +G A EA+
Sbjct: 647 DTGHAEASVKENNLKLYSHLKVLVAEDNNVNRMVIKGMLGKFGIEPEMVENGKLAFEAVT 706
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
PD FDL+LMDC+MP+MDG+EAT IR+ E + +
Sbjct: 707 --------------------APDAD-FDLVLMDCEMPEMDGFEATRCIREYERRNMLPDT 745
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
IVALTAHAM + GMN Y++KP+
Sbjct: 746 LIVALTAHAMQEHREAVYQAGMNHYMSKPV 775
>gi|373459707|ref|ZP_09551474.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371721371|gb|EHO43142.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 807
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 170/311 (54%), Gaps = 39/311 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R AE +N +KS+FLANMSHE+RTPM A+IGL E+L + +L EQ + IK+S+Y L
Sbjct: 278 RELAEKANKFKSEFLANMSHEIRTPMNAVIGLTELLLNT-ELNEEQRDFLTTIKESAYGL 336
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L L+N ILD SK+E+GK++L EFD++ +E + + + ++E + + ++P N
Sbjct: 337 LALINDILDFSKIEAGKLDLSEEEFDIRTLIETTAEGLAHKADEKDLELAVFIDPDLPTN 396
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
V GDPGRV Q+ +NL+ N+IKFT G I++ SK F
Sbjct: 397 VIGDPGRVRQVLTNLLGNAIKFTHKGEIVVE--------SKLLDSF-------------- 434
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
D+ L + F V DTG GI + K + +F+ F Q D STTRK+GGTGLGL
Sbjct: 435 -------------DDTLKIQFSVRDTGIGIPKEKLDLIFKEFTQADGSTTRKYGGTGLGL 481
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL--GASSESKQIYD-ADFPNTVVVLATVG 709
SI + L MGG+I V + + G+ + L G +K++ + + N V++
Sbjct: 482 SISKKLTEMMGGKIWVESEVNKGSTFYFTVTLKPGKKKIAKRLIELEEIHNLRVLIVDDN 541
Query: 710 SMERMIISQWL 720
R I+ Q L
Sbjct: 542 KTNRFILQQIL 552
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 25/151 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
+++I +G+RILLAED + Q VA KI+EK + +V +G +A +A R
Sbjct: 680 EEQIRQGIRILLAEDNMINQKVARKIIEKKNYALDIVNNGKEAYKAALRQ---------- 729
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
+D+ILMD QMP MDG EAT +IR H R+IPI+A+TAHAM
Sbjct: 730 -------------HYDIILMDVQMPVMDGIEATKKIRSKLDGH--RHIPIIAMTAHAMKG 774
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
D +KCL GM+ Y++KPI + + + I + T
Sbjct: 775 DREKCLAAGMDDYISKPIKPDDLYAMIEKWT 805
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 944 KRILE-----GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESS 998
KR++E LR+L+ +D + + +IL G +A+ L
Sbjct: 522 KRLIELEEIHNLRVLIVDDNKTNRFILQQILTNWNFRPEACEGGKEAIVRL--------- 572
Query: 999 RRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
+++ +G P F ++L+D QMP+ DG I K AR I+ LT+
Sbjct: 573 -KKAKQEGDP--------FAIVLLDMQMPEWDGEMTAKAIIKEPELKDAR---IIILTSL 620
Query: 1059 AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
D +G +AYL KP+ + +TI+ +
Sbjct: 621 GHRGDASYLKQLGCSAYLVKPVKQSHLFNTIVNV 654
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 33/303 (10%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+++AEA++ KSQFLA +SHE+RTPM ++G+L+ +L ++ + T Y+ Q+ A
Sbjct: 371 KKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQV--CGKA 428
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+ K+ELE+ FDL+ L+++V +FS + S +E + +S+ +P
Sbjct: 429 LISLINEVLDRAKIEARKLELESVPFDLRSILDDVVSLFSSKSSEKGIELAVYVSERVPE 488
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-----------------------GWCEN 568
+ GDPGR QI +NL+ NSIKFT GHI ++ G +
Sbjct: 489 LLLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKVEPVVNGINGHKDE 548
Query: 569 LDTSKNTAEFPT-------DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG 621
T ++ T D + F+ L + N E +K+ L V+DTG G
Sbjct: 549 TSTISSSVSHNTLSGFEAADSRNSWENFKLLLSYETNEMPYGSESDKVTLVVSVEDTGIG 608
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681
I + VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 609 IPIHAQDRVFTPFMQADSSTSRNYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFT 668
Query: 682 LLL 684
+L
Sbjct: 669 AVL 671
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 40/170 (23%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
+ SS +L G IL+ +D + VA L+K GA V V G A+
Sbjct: 840 HDSSPLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDAL----------- 888
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR--------------KSES 1043
+LLQ P +FDL LMD QMP+MDG+EAT +IR SE+
Sbjct: 889 ----ALLQ-----VPH--KFDLCLMDIQMPEMDGFEATRQIRAMEAKAHDQEDDAYNSEA 937
Query: 1044 EHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ A+ ++P++A+TA + A ++C GM+ Y++KP + +++ +
Sbjct: 938 DSTAKRAEWHLPVLAMTADVIQATHEECTKFGMDGYVSKPFEEKQLFQAV 987
>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 1187
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 174/317 (54%), Gaps = 40/317 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
++ SA V IL I IL+ +++L+A + +AR AE++N KS FLANMSH
Sbjct: 437 LIYSAFVFILAI----ILLAYTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSH 492
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM AIIG+ ++ + +L Q + + ++ +S+ +LLRLLN ILD SKVE+GK+EL
Sbjct: 493 EIRTPMNAIIGMSHLVL-ESELNKHQKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLEL 551
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E T F L + L++ +D+ SV+ + +++ +L + N+P+ + GDP RV QI NL N+I
Sbjct: 552 ERTPFSLDELLDQAIDILSVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAI 611
Query: 553 KFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612
KFT G + +R L+ T ++ T L
Sbjct: 612 KFTHQGKVTLR-----LNLLHKTKQYST------------------------------LE 636
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672
V+D G G+ + +F SF Q D STTRK+GG+GLGL+I + +++ M G I V
Sbjct: 637 LVVEDEGIGMTPGQLNKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKGTISVTSTL 696
Query: 673 SPGTLMQLYLLLGASSE 689
G+ ++ L +E
Sbjct: 697 GKGSTFKVQFELEYCNE 713
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 31/160 (19%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P ++S+ SS K+ RIL+ ED + Q + +L VG V + G +A+E L +
Sbjct: 851 PATTSSGSSLTKK-----RILVVEDHRINQELVRDVLVNVGCVVQIANHGKEALELLVK- 904
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
FD +LMDCQMP MDGY+AT IR+ + +PI
Sbjct: 905 ----------------------HSFDAVLMDCQMPIMDGYQATQNIRQ---KLKLIELPI 939
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ALTA+ + DEKK L GMN L KPID + ST+ +L
Sbjct: 940 IALTANTLAEDEKKALDAGMNCVLHKPIDIPLLKSTLAKL 979
>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
Length = 1203
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 167/303 (55%), Gaps = 26/303 (8%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV +LVI + I +++ K+ + ++ + +AEA++ KSQFLA +SHE+
Sbjct: 594 ITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEI 653
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q S L+ L+N +LD +K+ESG++ELE
Sbjct: 654 RTPMNGVLGMLKMLM-DSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEA 712
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L+ ++ +FS + +E + +SD +P V GDPGR QI +NL+ NSIKF
Sbjct: 713 VPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKF 772
Query: 555 T-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613
T GHI + S + A D KF + T + E + + L
Sbjct: 773 THDKGHIFV---------SVHLA----DEVKFKKLSCTD---------SMEETSIIKLLV 810
Query: 614 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673
V+DTG GI +F F Q D ST+R +GGTG+GLSI + LV+ MGGEI ++
Sbjct: 811 TVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGF--ESE 868
Query: 674 PGT 676
PGT
Sbjct: 869 PGT 871
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 49/199 (24%)
Query: 911 REDLIHTMFRERHQIGSSR---RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACK 967
R ++ + F+E IG + R +P + N +L RIL+ +D + + VA
Sbjct: 1027 RLSVLISCFQEVFGIGKRKQANRGKPLTLGN-------LLREKRILVVDDNAVNRRVAEF 1079
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
L+K GA V+ V G + +LL P FD MD QMP
Sbjct: 1080 ALKKYGAIVTCVDSG-----------------KAALLMLKPPHN-----FDACFMDLQMP 1117
Query: 1028 KMDGYEATIEIRKSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGV 1070
+MDG+ AT EIR+ ES+ R + PI+A+TA + A+ ++C+
Sbjct: 1118 EMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKC 1177
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ Y+ KP + +++ S +
Sbjct: 1178 GMDGYVAKPFEEDQLYSAV 1196
>gi|336452021|ref|ZP_08622454.1| PAS domain S-box [Idiomarina sp. A28L]
gi|336281068|gb|EGN74352.1| PAS domain S-box [Idiomarina sp. A28L]
Length = 902
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 158/283 (55%), Gaps = 40/283 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSS 469
+AR AE +N KS FLANMSHE+RTP+ AI+G+ + LK+ +LT++Q V I SS
Sbjct: 216 EARATAETANLAKSDFLANMSHEIRTPINAIVGMANLALKT--ELTDKQQRYVKVIDSSS 273
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
ALL ++N ILD SK+E+ K+ +E FDL + L L DMF+ + + +E +++L NI
Sbjct: 274 QALLGVINDILDFSKIEANKLTIERIPFDLDEVLGTLADMFAYKAYDKGLEFIINLPANI 333
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + GDP R+ Q+ NL++N+IKFT G I + C LD
Sbjct: 334 PTMLMGDPLRLQQVLINLVSNAIKFTDDGEINVS--CTLLD------------------- 372
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
R ++K+ L EV DTG G+ + +F++F Q D STTRK GGTG
Sbjct: 373 --------------RSEDKVWLRIEVKDTGLGMTAEQTAKLFQAFTQADTSTTRKFGGTG 418
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT--LMQLYLLLGASSES 690
LGL+I R LV M G+I V + G+ ++L L L S +S
Sbjct: 419 LGLTISRRLVTLMQGDIGVSSSANQGSNFFIELVLPLQESQDS 461
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 884 YSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQ 943
Y+ +K R+ + P +++ + MF R Q + + Q +
Sbjct: 563 YAEELAEKARQVGTDDFITKPYTTATLARVMTGAMFGSRKQQSAEKHAQSIPDT------ 616
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
L+G +L+ ED + Q VA ++L G V + +G AV ++
Sbjct: 617 ---LQGAPLLVVEDNEINQHVAREMLTGHGFVVDIAENGEIAV---------------AM 658
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+Q + ++ ++LMD QMP MDGY+A IR+ + + +PI+A+TA+AM+ D
Sbjct: 659 VQDN--------QYAIVLMDIQMPIMDGYQAAERIRQF---YSYQQLPILAMTANAMSGD 707
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTI 1089
+K L GM ++ KPID ++ I
Sbjct: 708 AEKSLAAGMQGHIPKPIDEALLLMQI 733
>gi|441500535|ref|ZP_20982692.1| hypothetical protein C900_05462 [Fulvivirga imtechensis AK7]
gi|441435686|gb|ELR69073.1| hypothetical protein C900_05462 [Fulvivirga imtechensis AK7]
Length = 878
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 178/337 (52%), Gaps = 44/337 (13%)
Query: 362 KADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNN 421
KA +RA + I + A+ LV + + I+ N +S+ K + +L A+ KAE
Sbjct: 315 KATDRAIDLITITLIAA---LVFFAVLLFIIFNDISRNQKNKEKLRK---AKEKAEKLAK 368
Query: 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILD 481
K +FL+NMSHE+RTP+ +IIG E L+ L EQ + I S LLR++N ILD
Sbjct: 369 VKEEFLSNMSHEIRTPLNSIIGYTEQLEGT-PLLQEQKKYLSSIHHSGNHLLRIINDILD 427
Query: 482 LSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVF 541
+K+ESGK+ LE+ F + ++E+++ F ++E ++SD++P V GDP R
Sbjct: 428 YAKLESGKLSLESIGFSAGQNIDEVIESFENHFKKKHLEIRYEISDSVPEVVIGDPVRFK 487
Query: 542 QIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM 601
QI NLI NSIKFTS G I ++ E +T K+ A
Sbjct: 488 QILINLIGNSIKFTSKGAIEVK--LEAKETDKDVA------------------------- 520
Query: 602 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661
+LAL V DTG GI +K ++F F Q D STTRK+GGTGLGLSIV+ +V
Sbjct: 521 ------RLALT--VADTGIGIPPAKVNSIFNDFAQVDSSTTRKYGGTGLGLSIVKKIVEM 572
Query: 662 MGGEIKVVKKNSPGT--LMQLYLLLGASSESKQIYDA 696
G I V + GT L++L +G+ + K++ A
Sbjct: 573 HDGTISVESEEGKGTAFLIELSYKIGSKEDLKEVQKA 609
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+DLILMD QMP+M G EAT +IR E + G R IP++ALTA A + +CL GM+ Y+
Sbjct: 664 YDLILMDVQMPEMSGLEATEKIRSIEKKAGKR-IPVIALTAAASREEADQCLKAGMDGYV 722
Query: 1077 TKPIDSERMVSTILRL 1092
KP + S ++ +
Sbjct: 723 LKPFTQIELYSKLIEM 738
>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
Length = 916
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 172/342 (50%), Gaps = 39/342 (11%)
Query: 403 RAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTV 462
RAE I L A+ AEA+N KS FLANMSHE+RTPM +IG+ + L + LT EQ +
Sbjct: 385 RAE-IEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTD-LALETALTEEQREYL 442
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
K S+ +LL ++N ILD SK+E+GK+++E+ FDL + + + + +++ ++E +
Sbjct: 443 NIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRAHEKDIEIL 502
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582
D+ ++PR V+GDP R+ Q+ NL+ N+IKFT G I
Sbjct: 503 SDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQGEI---------------------- 540
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
A + L Q N + F V DTG GI K +F++F Q D STT
Sbjct: 541 -----ALQADLMQLQN--------GHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTT 587
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ--IYDADFPN 700
RK+GGTGLGLSI R LV MGG + + + G+ + L S + I+ D
Sbjct: 588 RKYGGTGLGLSICRRLVELMGGTLWLHSEPGKGSTFHFSVQLQISENAIPLVIHPVDVTG 647
Query: 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRE 742
+++ + R I+ L V+ E ++RE
Sbjct: 648 RHMLIVDDNATNRRILRGMLATLHVTCQEADSGKTALALMRE 689
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 26/167 (15%)
Query: 927 SSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAV 986
SS P + +S +R+L ILL ED P Q +A +L K G ++ +G +A+
Sbjct: 773 SSPEPSPLLTRHSLREAQRVLN---ILLVEDHPTNQKLALGLLNKWGHHGTLAQNGQEAL 829
Query: 987 EALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG 1046
+ +LA++S FD+ILMD QMP M G EAT IR E+
Sbjct: 830 D----ILASQS-------------------FDIILMDMQMPVMSGVEATQRIRAREAAMQ 866
Query: 1047 ARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
PI+A+TA AM D CL GM+ YL KPI + + + +L T
Sbjct: 867 LPRTPIIAMTAAAMQDDRDACLAAGMDDYLAKPIKVKELQALLLAYT 913
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD IL+D QMP+MDGYE R +EH A P++ L++ A+ D +C G+ +
Sbjct: 693 QFDCILLDAQMPEMDGYELA---RHLHAEHPALP-PMLMLSSGALRGDALRCQEAGIAGF 748
Query: 1076 LTKPIDSERMVSTILRLTKNMPSEAT 1101
KPI S+ ++S + RL N P E++
Sbjct: 749 FAKPISSDELLSALGRLFDNSPKESS 774
>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
HTCC2601]
gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
HTCC2601]
Length = 855
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 179/329 (54%), Gaps = 46/329 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
+++ +++ EL+ +A+R+AE +++ KS FLANMSHE+RTPM ++G+ E+L+ + L+
Sbjct: 309 ITEAKRIQQELV---EAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLR-ESALS 364
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+EQ V I+ S ALL ++N ILD SK+E+ +++L+ FDL++ + E++ M
Sbjct: 365 DEQALYVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLMLQPTAR 424
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR--GWCENLDTSK 573
+E ++D +P GDPGRV QIF+NL+ N++KFT+ GH++IR G C
Sbjct: 425 EKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCV------ 478
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
E+ + A+ V+DTG GI K E +F
Sbjct: 479 -------------------------------EEGEAAVHATVEDTGIGIPPDKIEHIFGE 507
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
F Q + R+ GTGLGL+I + L + MGGEI V + G+ L ++L E QI
Sbjct: 508 FNQVEDDRNRQFEGTGLGLAITKRLTDLMGGEIWVESEAGRGSCFGLRMVL-PVDEPAQI 566
Query: 694 YDADFPNTV--VVLATVGSMERMIISQWL 720
A P+++ V++ + R I++Q +
Sbjct: 567 ETAALPDSLREVLVVDDHVLNRAILTQQM 595
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 27/142 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
L ++LAED Q+V K+ E +G + + +G++AVEA R+R
Sbjct: 728 LDVILAEDNRTNQMVFRKMAEGLGLPLELRLAGNGIEAVEAY---------RKR------ 772
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
R DLI MD MP+MDG +AT EIR E GA ++PI+A+TAHAM D
Sbjct: 773 --------RPDLIFMDISMPRMDGKQATQEIRALEPP-GA-HLPIIAVTAHAMTGDRDGI 822
Query: 1068 LGVGMNAYLTKPIDSERMVSTI 1089
L G++ YLTKP+ + + I
Sbjct: 823 LEAGLDDYLTKPLRKQELARLI 844
>gi|350552273|ref|ZP_08921477.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794650|gb|EGZ48461.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1258
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 152/263 (57%), Gaps = 38/263 (14%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGL-LEILKSDDQLTNEQYSTVCQIKKSSYALL 473
+AEA+N K++FLAN+SHELRTPM +IG+ +L+++ +Y+ + ++ S ++
Sbjct: 723 QAEAANATKTEFLANISHELRTPMNGVIGMNGLLLETELTEEQREYAAI--VRNSGELMM 780
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
++N ILD+SK+E+GK++LE FDL+ L +LVD+ +++ + +E L +PR++
Sbjct: 781 SMINDILDVSKIEAGKLDLEILAFDLEGMLGDLVDIMALRAYDKGLELFYTLEPGLPRHM 840
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
RGDPGR+ QI SNLI N+IKFT G I IR C +
Sbjct: 841 RGDPGRLRQILSNLICNAIKFTPKGEIAIRVAC--------------------------V 874
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+QQ++ A+ L F V DTG GI K +FE F Q D STTR++GG GLGL+
Sbjct: 875 QQQSDMAV---------LRFAVRDTGIGIPPDKLGQLFEKFTQVDSSTTRRYGGMGLGLA 925
Query: 654 IVRTLVNKMGGEIKVVKKNSPGT 676
I + L M GEI VV + G+
Sbjct: 926 IAKQLTEMMHGEIGVVSEAGQGS 948
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 24/142 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILL ED + Q + ++L+K+G V G +A+ AL
Sbjct: 1133 RILLVEDNLINQRMMMQMLKKLGLRADAVAHGAEALNAL--------------------- 1171
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKCLG 1069
+ +DL++MD +MP MDG EAT +IR + +++IPI+A+TAHAM+ D +KCL
Sbjct: 1172 --EMTHYDLVIMDVKMPIMDGLEATRQIRAHATPMRSSQDIPIIAITAHAMHLDREKCLQ 1229
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GMN YL KPI ++ + R
Sbjct: 1230 AGMNDYLAKPITLHSLIEVLDR 1251
>gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
Length = 1033
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 157/295 (53%), Gaps = 42/295 (14%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTN 456
+ + +RA++ A+ A+A+ KSQFLANMSHE+RTPM A++GL +L+SD L
Sbjct: 287 RYVAIRADITERKRAKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESD--LKP 344
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
EQ + ++ KS AL+R++N ILD S++E+G++ +E ++ L E+ D+FS Q
Sbjct: 345 EQREQLIKVSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEE 404
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKN 574
+E LD+ P V GDP R+ Q+ +NL+ N+IKFT G HI +R
Sbjct: 405 KGLELFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFTDHGEIHIGVR----------- 453
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
+G D L LC V DTG G+ + +F+SF
Sbjct: 454 -------VAHYG-------------------DATLTLCINVRDTGIGMAPEQIGVLFQSF 487
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
Q D STTR +GG+GLGL+I + LV MGG+I + GT + + +G + +
Sbjct: 488 TQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQGTNVSFSVAVGMAPD 542
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+G+R+LL ED L Q VA L K G +V+V G +AVE +
Sbjct: 701 FDGVRVLLVEDNDLNQEVASSFLRKRGVSVTVAWHGGEAVELIQHQ-------------- 746
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+FDL+LMD MP M G EA IR+ +N+PIVA+TA M D +
Sbjct: 747 ---------QFDLVLMDLHMPVMGGIEAARRIRELPQ---GKNLPIVAMTAAVMEEDRAR 794
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
C GMN ++ KP++ E + ++ T+
Sbjct: 795 CRAAGMNGFVAKPVEPEDLARVLVMYTR 822
>gi|421854961|ref|ZP_16287344.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189622|dbj|GAB73545.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 934
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 41/349 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + ++ D L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
D++P+ + GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ M + L F V D+G G+ + + +FESF QGD S
Sbjct: 434 ----------------QDGM-----EQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I ++ +P G+ + G E +Q +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQH-P 531
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+F + V+ ++ +L +V ET L L +L D
Sbjct: 532 NFEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKD 580
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL IL +D IV +L ++ T + G +A++ L+ + R+ L
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQI----ERKEKL----- 713
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKC 1067
FDLI MD QMP M G + T IR ES G ++PI+ALTAHA+ ++ K
Sbjct: 714 --------FDLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKL 765
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKN 1095
L VGM+ Y+TKPI ++++ + + T N
Sbjct: 766 LKVGMDDYVTKPIQIDQLIHILTQWTNN 793
>gi|409203835|ref|ZP_11232038.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas
flavipulchra JG1]
Length = 1243
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 163/297 (54%), Gaps = 39/297 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
VS+ +L+ ELI +A+ A+ S KS+FLANMSHE+RTPM AIIG+ L +L
Sbjct: 478 VSERNQLQRELI---EAKNLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSH-LALATELN 533
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+Q+ V +I ++ LLRL+N ILD SK+E+GK+ELE F +K L+ + + SV+
Sbjct: 534 AKQHDYVSKIDTAAKQLLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQ 593
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E V D+ +P V GD R+ Q+ NL N++KFT +G ++IR N++
Sbjct: 594 EKQLELVFDIDSQVPYCVIGDQFRISQVLINLAGNAVKFTETGEVVIRVALVNVEK---- 649
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
G A K+K F V D+G G+++ + + +F+SF
Sbjct: 650 ----------GLA---KIK------------------FSVKDSGIGMNKRQQKNLFQSFS 678
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
Q D S TRK+GGTGLGL+I + LV MGGEI V + + G+ L + S E Q
Sbjct: 679 QADNSITRKYGGTGLGLTISQQLVKLMGGEIYVESEENVGSEFYFTLEMEVSDELSQ 735
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 29/159 (18%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
K+ L G+ IL+AED P+ Q +A +IL GA V+V +G +A++ ++
Sbjct: 884 KQALNGISILVAEDQPVNQEIAAEILSSFGAQVAVADNGQEAIDQVH------------- 930
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+ D++LMD QMP MDG AT +R E +PI+A+TA+AM D
Sbjct: 931 ----------SKHIDIVLMDMQMPVMDGITATQNLR---IEFDKNTLPILAMTANAMEED 977
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
+ C+ GMN ++TKPID E++V +IL K + +EA G
Sbjct: 978 IQTCIDAGMNDHVTKPIDVEQLVKSIL---KYVCTEADG 1013
>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
Length = 932
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 148/265 (55%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + ++ L+NEQ
Sbjct: 267 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQNLSNEQRLY 326
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE F+L++ + +++DM S + +++
Sbjct: 327 MQTIRKSSAHLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDM 386
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
DNIP V GD RV QI +NLI+N+IKFT G II+R E+ D
Sbjct: 387 AFYYGDNIPEIVIGDALRVKQILTNLISNAIKFTPDGEIIVRVRMEHDDI---------- 436
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
++ L F V D+G G+ + + +FESF QGD S
Sbjct: 437 -------------------------DQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 471
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV M G I
Sbjct: 472 TRQFGGTGLGLAISKQLVQLMHGHI 496
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL +L +D IV +L ++ T S G +A+ + + +
Sbjct: 660 GLHVLAVDDHLPNLIVLEALLSELNVTTSKALSGQEALNIIEQRI-------------EQ 706
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-NIPIVALTAHAMNADEKKC 1067
+E P FD++ MD QMP M G + T IR ES + +PI+ALTAHA+ +++K
Sbjct: 707 NEKP----FDVVFMDIQMPVMSGIDTTRAIRSLESTLDTQMRLPIIALTAHALADEKQKL 762
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTK 1094
L VGM+ Y+TKPI E+++ + + +K
Sbjct: 763 LKVGMDDYVTKPIQMEQIIHILNQWSK 789
>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 909
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 151/274 (55%), Gaps = 39/274 (14%)
Query: 404 AELIS-HLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTV 462
AE+I H+ R+A N KS FLANMSHE+RTPM AI+G+ E+L + QLT EQ V
Sbjct: 372 AEMIDDHVQELRRA---NEAKSDFLANMSHEIRTPMNAILGMTELL-GETQLTPEQAEYV 427
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
+ + LL L+N ILDLSKVESG+MEL+ T+F+L + +E+ ++ +V+ +E V
Sbjct: 428 RICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLELV 487
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582
+ +P V GDPGR+ QI NL+ N++KFT G I++ + D
Sbjct: 488 CHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTERGEIVL--------------QVERDP 533
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
+ G A A+ F V DTG GI K E +FE F Q D STT
Sbjct: 534 DQPGEAG--------------------AIRFAVSDTGIGIAADKKEVIFERFSQADSSTT 573
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
R++GGTGLGL+I R LV M G I V + G+
Sbjct: 574 RRYGGTGLGLTISRYLVEMMKGRIWVESELGKGS 607
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 1014 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1073
T ++D++LMD QMP MDG AT EIR+ E G P++ALTA+AM D ++ L G N
Sbjct: 820 TGQYDVVLMDIQMPVMDGITATREIRQWERRKGRLQTPVIALTANAMREDMERSLEAGCN 879
Query: 1074 AYLTKPIDSERMVSTILRLT 1093
+LTKPI + ++ + R +
Sbjct: 880 DHLTKPIKKKTLLEALYRFS 899
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G+R+L+ +D +I+ + ++ G G + + + R A QG
Sbjct: 631 LRGIRVLIIDDNETNRIILRETVKSWGVVPVEASGGAEGIAEMKRAKA----------QG 680
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P + L+L+DC+MP+MDG++ I ++E E + +V T+ N D ++
Sbjct: 681 LP--------YQLVLLDCRMPEMDGFQVAERI-QAEVEFCEATVLMV--TSDNRNDDIQR 729
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
+G+ AYL KP+ ++ T+L + + P +
Sbjct: 730 IKQLGLAAYLVKPVKRNDLLKTVLSVLERCPKK 762
>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 966
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 153/269 (56%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++ R A + +KS+FLA MSHE+RTPM+ ++G++E+L LT +Q I +S+
Sbjct: 287 VETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQT-HLTPQQKDYTQTIYRSA 345
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILDLSK+E+G+ LE+ +FDLQ LE +VD+ +V+ + +E ++ L N+
Sbjct: 346 KHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEPNL 405
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GD R+ Q+ NL+NN+IKFT SGHIIIR T + ++
Sbjct: 406 PRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRV------TPRVISQ------------ 447
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ + + F ++DTG GI +F+ F +T R++GGTG
Sbjct: 448 -----------------DHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTG 490
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGLSI + LVN MGGEI V + G++
Sbjct: 491 LGLSICQHLVNLMGGEIGVKSQEEEGSIF 519
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 25/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
PC + ++++ R L+ILLAED + Q V L+++G V DG ++ L
Sbjct: 695 PCCHLSQTNDKLRASIPLKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHL--- 751
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
+T +DLILMDCQMP +DGYE T IR S++ R I
Sbjct: 752 --------------------ETQHYDLILMDCQMPILDGYETTARIRGSQNSQ--RPPII 789
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ALTA M +D +CL VGM+ Y+TKPID + +V+ I R
Sbjct: 790 IALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINR 828
>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
Length = 1767
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 184/336 (54%), Gaps = 40/336 (11%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL ++ + L A+ +A+A++ K FLANMSHE+RTPM AIIG+ ++ L +Q
Sbjct: 1018 ELKLLSDEL--LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT-ALDKKQ 1074
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V +I+++S +LL ++N ILD SK+E+GK+++E+ F L LE+L DMFS + ++
Sbjct: 1075 KNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQ 1134
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + ++ N+PR++ GD R+ Q+ NL+NN+IKFT G +++ S N E
Sbjct: 1135 LELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLL---------SLNLVE- 1184
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++++ + L F V D+G G+ + +F+SF Q D
Sbjct: 1185 -------------------------QQNDDVVLRFSVRDSGIGLTADQQAKLFKSFSQAD 1219
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK+GGTGLGL+I + LV MGG I V + G+ + L SS K +
Sbjct: 1220 TSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKLQISSGQKLTVAQEL 1279
Query: 699 PNTVVVLATVGSMERMIISQWLRKK--KVSTLETSE 732
+++A + R I+ L +V T+ + E
Sbjct: 1280 EGMPILVADDNATARDIMRTTLESMGFRVDTVRSGE 1315
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RILL ED + VA + LE+VG +S+ +G A++ L +
Sbjct: 1421 LKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLEQQ-------------- 1466
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMDCQMP MDGY+AT +RK +P+VA+TA+AM D++
Sbjct: 1467 ---------SFDLVLMDCQMPVMDGYQATQALRKRPE---LTELPVVAMTANAMAGDKEM 1514
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GMN ++ KPI+ + T+L+
Sbjct: 1515 CLRAGMNDHIAKPIEVNLLYQTLLK 1539
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 33/156 (21%)
Query: 940 SSNQK----RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
SS QK + LEG+ IL+A+D + + LE +G V V G EA+ R +
Sbjct: 1268 SSGQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSG---EEAVTRCIQQ 1324
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVA 1054
E + + L+D +MP +DG E +I++ A+ P I+
Sbjct: 1325 E--------------------YAVALIDWKMPNLDGIETAKQIKQQ-----AKKAPRILM 1359
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AHA + +G+ Y++KPI + R++ I+
Sbjct: 1360 VSAHANQDFLSQIEELGLAGYISKPISASRLLDGII 1395
>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 985
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 191/377 (50%), Gaps = 36/377 (9%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
++ + VIG + IL + +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 330 LTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQILKVRAEAADIAKSQFLATVSHEI 389
Query: 435 RTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM I+G+L +L +D T + Y+ Q AL+ L+N +LD +K+E+GK+ELE
Sbjct: 390 RTPMNGILGMLALLLDTDLSSTQKDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLELE 447
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FD++ L++++ +FS + +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 448 AVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVK 507
Query: 554 FTSSGHIIIRGWCENLDTSKNTAEFP---TDRKKF---GRAFRT----KLKQQANNAMNF 603
FT GHI ++ +++ +D F GR F+T + N NF
Sbjct: 508 FTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGRDFQTLSGCEAADDQNGWDNF 567
Query: 604 R-----EDNKL-----------------ALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ ED +L L V+DTG GI VF F Q D ST
Sbjct: 568 KHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSST 627
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 701
+R +GGTG+GLSI + LV MGG+I + + G+ + G ++ I D PN+
Sbjct: 628 SRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKN-SINDLKKPNS 686
Query: 702 VVVLATVGSMERMIISQ 718
+ + M+ +I+ +
Sbjct: 687 EELPPSFRGMKAIIVDR 703
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S+ + +L G RIL+ +D + + VA L+K GA V G A++ L
Sbjct: 840 NGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLL-------- 891
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH---------GAR 1048
+ P FD MD QMP+MDG+EAT IR E++ G
Sbjct: 892 ------------QLPHN--FDACFMDIQMPEMDGFEATRLIRMMENKENEGESYAGEGKW 937
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
++PI+A+TA ++A +CL GM+ Y++KP + E + + + K
Sbjct: 938 HMPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFK 983
>gi|395647467|ref|ZP_10435317.1| multi-sensor hybrid histidine kinase [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 1056
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 150/273 (54%), Gaps = 40/273 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A +N K QFLANMSHE+RTPM A+IG+ +L +D LT +Q V I+++S A
Sbjct: 404 ARDIANQANQLKGQFLANMSHEIRTPMNAVIGMNHLL-ADTLLTPQQQHFVTAIRENSEA 462
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L++ ILD SK+ESG + +E EFDL + LE++ ++ + + + V + ++ ++P
Sbjct: 463 LLALISDILDFSKIESGNVNIEQVEFDLTEVLEDVTELLAPRAAEKGVRMICHIATDVPG 522
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R+ QI NL++N++KFT+SG I + W + D
Sbjct: 523 YVSGDPWRLRQILLNLLSNAVKFTASGSIRLLVWRADGDR-------------------- 562
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L F+V DTG GI S +VFE+F Q D STTR +GGTGLG
Sbjct: 563 -------------------LGFQVIDTGIGIAPSAQCSVFEAFLQADASTTRNYGGTGLG 603
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
LSI + L MGG I++ + G+ L L L
Sbjct: 604 LSISQRLARLMGGGIELQSQAGVGSTFTLTLPL 636
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+ +D + + LE+ G V DG++A+E L R +
Sbjct: 799 LDVLVVDDIATNREITQLFLERFGHRVIHARDGVEALEILGRKV---------------- 842
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD +LMD QMP+MDG EA ++R + + ++ALTA+AM+ D ++ +
Sbjct: 843 -------FDAVLMDGQMPRMDGMEAVRQLRSGQCSVLDEEVYVIALTANAMSGDRERFIE 895
Query: 1070 VGMNAYLTKPIDSERMVSTILRL 1092
G N YL KP+ ++ I R+
Sbjct: 896 AGANDYLAKPVLPMQLFDAITRV 918
>gi|392544011|ref|ZP_10291148.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida
JCM 20779]
Length = 1243
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 163/297 (54%), Gaps = 39/297 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
VS+ +L+ ELI +A+ A+ S KS+FLANMSHE+RTPM AIIG+ L +L
Sbjct: 478 VSERNQLQRELI---EAKDLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSH-LALATELN 533
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+Q+ V +I ++ LLRL+N ILD SK+E+GK+ELE F +K L+ + + SV+
Sbjct: 534 AKQHDYVSKIDTAAKQLLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQ 593
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E V D+ +P V GD R+ Q+ NL N++KFT +G ++IR N++
Sbjct: 594 EKQLELVFDIDSQVPYCVIGDQFRISQVLINLAGNAVKFTETGEVVIRVALVNVEK---- 649
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
G A K+K F V D+G G+++ + + +F+SF
Sbjct: 650 ----------GLA---KIK------------------FSVKDSGIGMNKRQQKNLFQSFS 678
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
Q D S TRK+GGTGLGL+I + LV MGGEI V + + G+ L + S E Q
Sbjct: 679 QADNSITRKYGGTGLGLTISQQLVKLMGGEIYVESEENVGSEFYFTLEMEVSDELSQ 735
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 26/148 (17%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
K+ L GL IL+AED P+ Q +A +IL GA V+V +G +A+E ++
Sbjct: 884 KQALNGLSILVAEDQPVNQEIAVEILSSFGAQVAVADNGQEAIEQVH------------- 930
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+ D++LMD QMP MDG AT +R E +PI+A+TA+AM D
Sbjct: 931 ----------SKHIDIVLMDMQMPVMDGITATQNLR---IEFDKNTLPILAMTANAMEED 977
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ C+ GMN ++TKPID E++V +IL+
Sbjct: 978 IQTCIDAGMNDHVTKPIDVEQLVKSILK 1005
>gi|421464586|ref|ZP_15913276.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
gi|400205339|gb|EJO36320.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
Length = 934
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 41/349 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + ++ D L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
D++P+ + GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ M + L F V D+G G+ + + +FESF QGD S
Sbjct: 434 ----------------QDGM-----EQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I ++ +P G+ + G E +Q +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQH-P 531
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+F + V+ ++ +L +V ET L L +L D
Sbjct: 532 NFEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKD 580
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL IL +D IV +L ++ T + G +A++ L+ + R+ L
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQI----ERKEKL----- 713
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKC 1067
FDLI MD QMP M G + T IR ES G ++PI+ALTAHA+ ++ K
Sbjct: 714 --------FDLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKL 765
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKN 1095
L VGM+ Y+TKPI ++++ + + T N
Sbjct: 766 LKVGMDDYVTKPIQIDQLIHILTQWTNN 793
>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
Length = 935
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 152/265 (57%), Gaps = 35/265 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + +++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+D +P+++ GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYADGVPKHIIGDALRFKQILTNLISNAIKFTPDGEIIVRARME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
++ M ++ L F V D+G G+ + + +FESF QGD S
Sbjct: 434 ----------------HDGM-----DQCVLHFSVQDSGIGLSGTDRKKLFESFSQGDTSV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TR+ GGTGLGL+I + LV+ M G+I
Sbjct: 473 TRQFGGTGLGLAISKQLVSLMHGQI 497
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL IL +D IV +L ++ T + G +A++ + R E
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEAIDIIQRRYEQEQ---------- 710
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPIVALTAHAMNADEKK 1066
P FDL+ MD QMP M G + T IR ES N +PI+ALTAHA++ ++ K
Sbjct: 711 -------PAFDLVFMDIQMPVMSGIDTTRAIRSLESTFENHNRLPIIALTAHALSDEKHK 763
Query: 1067 CLGVGMNAYLTKP 1079
L GM+ Y+TKP
Sbjct: 764 LLQNGMDDYVTKP 776
>gi|423063675|ref|ZP_17052465.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715107|gb|EKD10265.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 946
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 153/269 (56%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++ R A + +KS+FLA MSHE+RTPM+ ++G++E+L LT +Q I +S+
Sbjct: 267 VETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQT-HLTPQQKDYTQTIYRSA 325
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILDLSK+E+G+ LE+ +FDLQ LE +VD+ +V+ + +E ++ L N+
Sbjct: 326 KHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEPNL 385
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GD R+ Q+ NL+NN+IKFT SGHIIIR T + ++
Sbjct: 386 PRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRV------TPRVISQ------------ 427
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ + + F ++DTG GI +F+ F +T R++GGTG
Sbjct: 428 -----------------DHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTG 470
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGLSI + LVN MGGEI V + G++
Sbjct: 471 LGLSICQHLVNLMGGEIGVKSQEEEGSIF 499
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 25/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
PC + ++++ R L+ILLAED + Q V L+++G V DG ++ L
Sbjct: 675 PCCHLSQTNDKLRASIPLKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHL--- 731
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
+T +DLILMDCQMP +DGYE T IR S++ R I
Sbjct: 732 --------------------ETQHYDLILMDCQMPILDGYETTARIRGSQNSQ--RPPII 769
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ALTA M +D +CL VGM+ Y+TKPID + +V+ I R
Sbjct: 770 IALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINR 808
>gi|428777290|ref|YP_007169077.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428691569|gb|AFZ44863.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1478
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 38/298 (12%)
Query: 392 LTNGVSKEMKLRAELISHLDARRK-AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
L ++E+ R E+ + L A ++ AE + KS+FLA MSHE+RTP+ +IG+L +L+
Sbjct: 816 LIYSAAREITERKEVEAELRAAKETAEMAAQTKSEFLATMSHEIRTPINGVIGMLHLLQ- 874
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
D +LT +Q S + + S+ +LL ++N ILD SKV+SG ++LE EFDL LE+
Sbjct: 875 DTELTFQQRSQLEIAQSSATSLLGIINDILDFSKVDSGNLKLETVEFDLIALLEDFAKTM 934
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
++ ++E +LD+S V+GDP R+ QIF+NL++N+IKFT +G I+I+ + E +
Sbjct: 935 ALPAQEKDLELILDVSQIQQPVVKGDPSRLRQIFTNLVSNAIKFTQAGEILIKCYLETV- 993
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
+L L V DTG GI + K ++
Sbjct: 994 -----------------------------------GEQLRLIGIVKDTGMGIPEDKQGSL 1018
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
F+ F Q D STTR++GGTGLGL+IV+ L + M G I + K G+ + L AS+
Sbjct: 1019 FDPFTQADASTTRQYGGTGLGLAIVKRLCDLMDGAIALESKLDEGSCFTFTVTLEAST 1076
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 26/158 (16%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP S+S + ++ +L+ ED + Q+V +L+K V + DGL+A+ L +
Sbjct: 1217 QPVSTSQTVIPSPQLKSNSCVLVVEDNRVNQLVIQGMLKKYPLQVQIAHDGLEALVMLQK 1276
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
+DL+ MDCQMP MDGYEAT +IR + + IP
Sbjct: 1277 -----------------------SHYDLVFMDCQMPNMDGYEATRQIRAGKHN---QTIP 1310
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I+A+TA+AM D++KCL GMN Y++KPI E++ + +
Sbjct: 1311 IIAMTAYAMVGDKEKCLAAGMNDYVSKPIAVEQVKAVL 1348
>gi|343085678|ref|YP_004774973.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM 745]
gi|342354212|gb|AEL26742.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM 745]
Length = 1332
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 217/433 (50%), Gaps = 49/433 (11%)
Query: 392 LTNGVSKEMKLRAELISHLDA-RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
L G +++ R E S L+A + AE +N KS FLANMSHE+RTP+ +IG ++L
Sbjct: 662 LMYGTYQDISSRKEFDSQLNAAKESAENANKAKSDFLANMSHEIRTPLNGVIGFSDLLMK 721
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
L+ Q + + S+++LL L+N ILD SK+E+GKMEL + D+ + ++ D+
Sbjct: 722 T-PLSETQLQYMKTVYHSAHSLLDLINDILDFSKIEAGKMELSIDKVDIFELGTQVADII 780
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ Q + +E +L+LS ++PR V GD R+ Q+ NL+ N+IKFT G + ++ E LD
Sbjct: 781 NYQAHSKGLELILNLSPHLPRFVYGDDIRIRQVLVNLLTNAIKFTHKGEVELK--VEILD 838
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
+ N D + F V DTG GI K +
Sbjct: 839 NTPN-------------------------------DETIKFRFSVKDTGIGISFDKQLKI 867
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
F++F Q D STTRK GGTGLGL+I L+ MG ++++ + + G+L L L A
Sbjct: 868 FDAFSQEDASTTRKFGGTGLGLTISNKLLGLMGSKLELKSEPNKGSLFYFDLCLKAEEGE 927
Query: 691 KQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPV 750
K+ ++ + + V++ R +I + L K + LE S +GL + +L+ PV
Sbjct: 928 KEKWNENHGLSKVLVVDDNQTNRYLIKEILEVKNIQCLEAS--NGLEGL--HVLEKEWPV 983
Query: 751 SSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSS----DLWREQLNSLDIF 806
D R P + I+ + + ++++ LSS DL +E+L L++
Sbjct: 984 DLVLMDL----RMPFLNGLETIEKIRSLPNQDIAKVSIVLLSSSNDNDLEKEKLVKLNVH 1039
Query: 807 HRKAMFAWVVNHQ 819
HR + + NHQ
Sbjct: 1040 HR--LIKPIKNHQ 1050
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 24/153 (15%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
IL+AED P+ ++ IL K+ T++++ EA N ++A E +++ P
Sbjct: 1085 FNILIAEDNPVNMKLSKIILSKISPTINII-------EAENGLMAYEY-----VIKNHP- 1131
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
DLILMD QMP M+GYE IR E HG ++IPI+ALTA + ++++C+
Sbjct: 1132 --------DLILMDIQMPIMNGYETAKAIRTIE--HG-KSIPIIALTAGTVKGEKERCID 1180
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
GMN Y++KP+ +++ I++ + S+ G
Sbjct: 1181 SGMNDYMSKPLVQDKLTEKIIKFLQPKNSDELG 1213
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 15/324 (4%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ S+ LVI + I+ + ++ + +++AE ++ KSQFLA +SHE+
Sbjct: 375 ITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEI 434
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q V + S L+ L+N +LD +K+ESGK+ELE
Sbjct: 435 RTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEV 493
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSIKF
Sbjct: 494 VPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKF 553
Query: 555 TSSGHIIIR-------GWCENLDT----SKNTAEFP-TDRKKFGRAFRTKLKQQANNAMN 602
T GHI + C ++T + + +P +RK+ FR ++ ++ M
Sbjct: 554 TEKGHIYLTVHVVEEIMHCLEVETGIQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMP 613
Query: 603 FR--EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
F + ++L V+DTG GI VF F Q PS R HGGTG+GLSI + LV
Sbjct: 614 FAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVG 673
Query: 661 KMGGEIKVVKKNSPGTLMQLYLLL 684
M GEI K G+ +L
Sbjct: 674 LMKGEIGFASKPQVGSTFTFTAVL 697
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L RI++ +D + VA L+K GA V+ G +A+ L
Sbjct: 859 LLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLK--------------- 903
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH--------------GARN-- 1049
P FD MD QMP+MDG+EAT IR E + G R
Sbjct: 904 --PPHN-----FDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWR 956
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ + R N
Sbjct: 957 TPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFLN 1002
>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
Length = 934
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 41/349 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A ++N KS FLAN+SHELRTP+ +I G + ++ D L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
D++P+ + GD R QI +NLI+N+IKFT G II+R E
Sbjct: 388 AFYYGDDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARME-------------- 433
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ M + L F V D+G G+ + + +FESF QGD S
Sbjct: 434 ----------------QDGM-----EQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDTSV 472
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVV--KKNSP---GTLMQLYLLLGASSESKQIYDA 696
TR+ GGTGLGL+I + LV+ M G+I ++ +P G+ + G E +Q +
Sbjct: 473 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVEDEHEQQH-P 531
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+F + V+ ++ +L +V ET L L +L D
Sbjct: 532 NFEHIHVLSFLAHPATANVLRHYLENYQVKHTETQSILDLFSRLNQLKD 580
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL IL +D IV +L ++ T + G +A++ L+ + R+ L
Sbjct: 663 GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQI----ERKEKL----- 713
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKKC 1067
FDLI MD QMP M G + T IR ES G ++PI+ALTAHA+ ++ K
Sbjct: 714 --------FDLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKL 765
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKN 1095
L VGM+ Y+TKPI ++++ + + T N
Sbjct: 766 LKVGMDDYVTKPIQIDQLIHILTQWTNN 793
>gi|443474974|ref|ZP_21064938.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443020231|gb|ELS34214.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1137
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 189/362 (52%), Gaps = 42/362 (11%)
Query: 408 SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKK 467
+ L+A + AEA+N KSQFLA MSHE+RTPM A+IG+ +IL+ D L+ +Q V I++
Sbjct: 486 AKLEAAKFAEAANQAKSQFLAVMSHEIRTPMNAVIGMTDILQ-DTPLSPQQRQYVNTIRQ 544
Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD 527
LL ++N ILD S++ESGK ELE F LQK ++E+ ++ + + + ++E +
Sbjct: 545 GGEVLLSVINNILDFSRIESGKFELEEQPFYLQKCVDEVFELMTSRMAEKSLELFALIDP 604
Query: 528 NIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGR 587
NIP+ + GD R+ QI NL++N+IKFT+SG III
Sbjct: 605 NIPQQIIGDYSRLRQILVNLVSNAIKFTASGEIIIT------------------------ 640
Query: 588 AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
N+ + R+ ++ L FEV DTG GI +F++F Q D S R++GG
Sbjct: 641 ---------INSQLVDRDSHRYELLFEVSDTGIGILPEAIGRLFQAFSQADSSINRQYGG 691
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLAT 707
TGLGL+I + L MGG+I V + G+ ++ A + D + ++ +A
Sbjct: 692 TGLGLAICKQLCELMGGKIGVQSQVGEGSTFSFSIMAQAIA-------FDRHSELMAIAP 744
Query: 708 VGSMERMI-ISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLK 766
+R++ + R + +L T +W + ++ + +++ FDA R+ +
Sbjct: 745 EIKGKRILSVHHSPRFQTAISLYTDKWEIDIKFAYSAIEALQFLTNESFDAVLIERQLAE 804
Query: 767 AE 768
A+
Sbjct: 805 AD 806
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED P+ Q + +LE +G V+ V +G +A+ A+
Sbjct: 892 LKILIAEDNPINQKILWLMLETLGYNVASVENGQKALNAIA------------------- 932
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+DLI MD QMP MDG A+ IR P I+ L+A+A L
Sbjct: 933 ----NNAYDLIFMDIQMPIMDGLTASKNIRLMSIHQ-----PWIIGLSANAFVESYDLAL 983
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNM 1096
GM+ YLTKP+ + +++ + R+ +++
Sbjct: 984 ASGMDDYLTKPLQTASLIAALQRIPQHL 1011
>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 922
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 171/325 (52%), Gaps = 28/325 (8%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV +LVI + I +S+ K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 271 INASVGVLVITLLVGHIFYAAISRIAKVEEDYREMMMLKVRAEAADVAKSQFLATVSHEI 330
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q S L+ L+N +LD +K+ESG++ELE
Sbjct: 331 RTPMNGVLGMLQMLMDTD-LDANQMDFAQTAHASGKDLISLINEVLDQAKIESGRLELEA 389
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L+ ++ +FS + + +E + +S +P V GDPGR QI +NL+ NS+KF
Sbjct: 390 VSFDLRSVLDNILSLFSGKSNEKGIELAIYVSSQVPEVVIGDPGRFRQIITNLVGNSVKF 449
Query: 555 T-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM------------ 601
T GHI + D ++T K G ++ + +N +
Sbjct: 450 TRDKGHIFVS--VHLADEVRSTLNVRDAVLKQGLNLVQDMQNEIDNTLSGCPVVDRWKSW 507
Query: 602 -NFR---------EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
NF+ E + L V+DTG GI +F F Q D ST+R +GGTG+G
Sbjct: 508 ANFKRLNSKDTMEESEMIRLLVTVEDTGVGIPLDAHSRIFSPFMQADSSTSRTYGGTGIG 567
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
LSI + LV+ MGGEI V + PGT
Sbjct: 568 LSISKCLVDLMGGEIGFVSE--PGT 590
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 43/196 (21%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R ++ + F+E IGS ++ Q + S + +L RIL+ +D + + VA L+
Sbjct: 746 RLSVLFSCFQE--AIGSGKKSQ--VNRRKPSTLQNLLREKRILVVDDNKVNRRVAEGALK 801
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V+ V G +A+E L P T FD MD MP++D
Sbjct: 802 KYGAIVTCVESGKEALELLK-----------------PPHT-----FDACFMDRHMPELD 839
Query: 1031 GYEATIEIRKSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGVGMN 1073
G+EAT +IR E + + + PI+A+TA + A ++C GM+
Sbjct: 840 GFEATRQIRARERQFNEQIASGEVSMEMFGNVAYWHTPILAMTADVIQATNEECRKCGMD 899
Query: 1074 AYLTKPIDSERMVSTI 1089
+++KP + E++ + +
Sbjct: 900 DFVSKPFEEEQLYNAV 915
>gi|431930089|ref|YP_007243135.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828392|gb|AGA89505.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 697
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 142/265 (53%), Gaps = 34/265 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE +N KS FLA M+HELRTP+ +IG+ ++L++ +L +EQ V I +S+
Sbjct: 175 ARAEAERANQAKSDFLATMTHELRTPLTGVIGMTDLLETT-ELNSEQREYVIAISRSAEL 233
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L L+ ILDLSK+++ +++LE T FDL+ ++E+ ++ Q +E VL ++ +P
Sbjct: 234 LGSLIGDILDLSKIDARRLQLEETPFDLRATVKEVCNLMEPQALGKGLELVLRVAPGLPA 293
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R QI NL+ N++KFT G + L + AE P DR
Sbjct: 294 RVIGDPLRTRQILLNLVGNAVKFTEQGEV-------ELSVTPRPAEGPLDRPH------- 339
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L FEV DTG GI K T+FESF Q D STTR+ GG+GLG
Sbjct: 340 -------------------LLFEVRDTGIGIPADKIATIFESFRQVDESTTRRFGGSGLG 380
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
+I R L MGG I V G+
Sbjct: 381 TTIARDLTQLMGGAIGVDSTEGQGS 405
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 26/151 (17%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
E +RIL+AED + V L+++G +V +V DG +A++A A +S
Sbjct: 573 EPIRILVAEDNAIAAKVIQTFLDRLGFSVVLVEDGEEALDA------ARASD-------- 618
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
FD+ +D +MPK+DG T R E + ++PIVALTA+A + C
Sbjct: 619 ---------FDIAFIDLRMPKLDGIAFTRAYRADERDG---HLPIVALTANAAEDTKTAC 666
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
L GM+ +L+KP+ +E + + R +P+
Sbjct: 667 LEAGMDDFLSKPVKAEALRQVVARFVPVIPT 697
>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 842
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 149/278 (53%), Gaps = 36/278 (12%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E++L+ + + AE +N KS+FLA MSHE+RTPM ++G+ IL +D L+ +Q
Sbjct: 429 EVELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASIL-ADTPLSEKQ 487
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ I S +LL ++N ILD SK+E+GK++L+N F L + L L D+FS + + N
Sbjct: 488 RKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRAHSKN 547
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E + +SD IP + GD GR+ QI +NL+ N++KFT G I I + D
Sbjct: 548 IELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDEDA------- 600
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ L V DTG GI K + +FESF Q D
Sbjct: 601 ----------------------------RNMKLKISVIDTGIGIPLGKQQKIFESFSQAD 632
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
STTR +GGTGLGLSI ++LV MGGE+ V + G+
Sbjct: 633 GSTTRTYGGTGLGLSISKSLVELMGGELGVESRPGEGS 670
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 24/142 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED P+ Q A ++L +G T + +G +A+ L +
Sbjct: 709 RVLLVEDHPINQEYAVELLNMIGITADIAENGREALTRLAK------------------- 749
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH-GARNIPIVALTAHAMNADEKKCLG 1069
+D++LMDCQMP MDGYE + IR +E H G+R +PIVALTA+A+ AD+++C+
Sbjct: 750 ----NHYDIVLMDCQMPVMDGYETAMAIRAAEQSHPGSRRLPIVALTANALPADQQRCMD 805
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GM+ +L KP +++ +++ R
Sbjct: 806 SGMDDFLAKPFSIQQLYASLAR 827
>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1562
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 164/275 (59%), Gaps = 9/275 (3%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AEA+N KS FLANMSHE+RTPM A+IGL ++L L + Q + +I SS
Sbjct: 793 AREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQT-SLDDRQRDYLNKISNSSRM 851
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+EL+ F + + L+++ +F + +E + ++S ++PR
Sbjct: 852 LLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFNISTDVPR 911
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHI---IIRGWCENLDTSKNTAEFPTDRKKFGRA 588
++GD R+ Q+F+NL+ N++KFT GH+ + + + ++ + G+
Sbjct: 912 ILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQESEVRDQGTEVRSQDLGQG 971
Query: 589 FRTKLKQQANNAMNFREDNKLA-LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
T + Q A + ++K+ L FE+ DTG G+D + + +F+ F Q D STTRK+GG
Sbjct: 972 --TGDRGQGLEAADRDSESKIVRLLFEIKDTGIGMDDEQVQRLFQPFSQADTSTTRKYGG 1029
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
TGLGL I LV +MGG ++V ++PG + Y
Sbjct: 1030 TGLGLVISHKLVQRMGGTLQV--DSTPGQGSRFYF 1062
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 78/145 (53%), Gaps = 28/145 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+G ILLAED L Q VA ++LEK GA +S+ +G +AVE M+ A S
Sbjct: 1229 FQGYSILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVE----MVEAGS--------- 1275
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMD QMP MDG+EAT +I + ++P++AL+A M D K
Sbjct: 1276 ----------FDLVLMDLQMPVMDGFEATRKILERFP-----DLPVIALSAAVMEEDRNK 1320
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GM +L+KPI+S + T+ R
Sbjct: 1321 SRQAGMRDHLSKPIESTSLYRTLAR 1345
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
D P + + ++ + + R+L+ +D + V ILE V DG AV+A+
Sbjct: 1065 DLPMAPESETTQECIGFDSHRVLVVDDHEAARQVLRNILESCMFQVKEAHDGRSAVDAV- 1123
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-KMDGYEATIEIRKSESE---HG 1046
+AA+ + G P ++ + MD +MP ++DG +A EI + +E G
Sbjct: 1124 --VAADRA-------GEP--------YEFVFMDWKMPGELDGLQAAREIDRLYAEGFLKG 1166
Query: 1047 ARNIPIVALTAH---AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
R P V ++A+ + D +C N +L+KP+ + + + I T PS
Sbjct: 1167 NRP-PFVVVSAYQRSELPEDSVECF----NCFLSKPVTASSIFNAIAEATGKAPS 1216
>gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2]
gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2]
Length = 1023
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 187/348 (53%), Gaps = 45/348 (12%)
Query: 393 TNGVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
T G+++ +K+ + I + ++ +K+E + KS FLANMSHE+RTP+ I+G LEILK+
Sbjct: 360 TKGINEAIKVVNDSIKIIQESIKKSEEATKAKSLFLANMSHEIRTPLNGILGFLEILKTT 419
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D LT EQ V I +S+ LL+++N ILD+SK+ES K+ +E EF E E +++F+
Sbjct: 420 D-LTPEQEEYVDTISQSAKNLLQIVNNILDISKIESNKVTIEEIEFKALDEFESTLEIFA 478
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
S+ +++ V ++S N+P ++GD ++ +I +NLINN+IKFT II
Sbjct: 479 TPASHKHIQYVTEISPNMPSILKGDILKIKEIITNLINNAIKFTPENGII---------- 528
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+ + L++ N NK + FEV DTG G+ +++ +F
Sbjct: 529 ----------------SVKILLQEIIN--------NKAKIYFEVRDTGIGMSEAQKAKIF 564
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
E+F Q D S TRK+GGTGLGL+IV++ + MG I V + + G+ + L
Sbjct: 565 EAFTQADASVTRKYGGTGLGLTIVKSYLEMMGSHINVESEINKGSRFYFTINLEVIDSKP 624
Query: 692 QIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQI 739
+ F NT + + + LRK+ +E + G+++I
Sbjct: 625 RYKQNSFNNTTLAILNTS-------KETLRKE--YAIEYLNYFGVSRI 663
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 25/174 (14%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+ P ++ Q++ + ++ L+AED P+ + + L+ +G + +GL +A
Sbjct: 743 KNKAPIIQKRKTTIQEKPIYQIKALIAEDNPINRKLLQTKLKSMGIESDIATNGL---DA 799
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
N+ T ++D+I MD QMP MDG EAT EI + E E G
Sbjct: 800 FNKY------------------TMYPEKYDVIFMDIQMPTMDGIEATQEIIEFEKEEGIP 841
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS---ERMVSTILRLTKNMPSE 1099
+ PI+A+TA+ + D+++ LG GM+ Y++KPI++ ER++ I + K P+E
Sbjct: 842 HTPIIAVTANVLKGDKERFLGTGMDDYISKPIETNELERVIKNIAK-HKYTPNE 894
>gi|345568010|gb|EGX50911.1| hypothetical protein AOL_s00054g647 [Arthrobotrys oligospora ATCC
24927]
Length = 1073
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 164/272 (60%), Gaps = 24/272 (8%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRL 475
A+ ++ KSQFLANMSHE+RTP+A ++G+ EIL D +LT EQ I++S+ ALL +
Sbjct: 452 AKEASRLKSQFLANMSHEIRTPIAGVLGMSEILL-DTELTEEQQEYAENIQRSANALLTV 510
Query: 476 LNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR- 534
+N ILD SKVESG++++E +F L L +++ M + + + D++D+I +++
Sbjct: 511 INDILDFSKVESGRLDIEEVQFSLALVLSDVIRMMGIHAEKKRLHFITDIADDIKYDIQV 570
Query: 535 -GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GDPGR+ QI +NL++NSIKFT GH+ + N++ K E D G KL
Sbjct: 571 LGDPGRIRQILTNLLSNSIKFTLDGHVRL-----NVEVEK---ELIVDTMTNGPV--PKL 620
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+ A + + + FEV+DTG GI + +F F Q D ST RK GG+GLGL+
Sbjct: 621 AKGA--------EKYVVVKFEVEDTGIGIKDDVMKLLFTPFGQADSSTARKFGGSGLGLA 672
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQ-LYLLL 684
I + LV+ MGG I++ K+ G+++ +YL L
Sbjct: 673 ISKNLVDLMGGIIEL--KSGMGSMVHPIYLKL 702
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 43/178 (24%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL---------NRMLAAESSRR 1000
L IL+ ED + Q +A K+++K+G T S V +G +A++ L + + + R
Sbjct: 849 LHILIVEDNLINQQIATKLVKKLGFTASAVSNGQEALDYLIEANLQFPKDAAINIPARRS 908
Query: 1001 RSLLQGS---------PSETPDTPRF--------------------DLILMDCQMPKMDG 1031
R+ S E TP DLILMDC MP +DG
Sbjct: 909 RATYAASIQLQVQQRLEQEDNMTPPLKLEEARNNRTDPTVNGKMFPDLILMDCHMPVLDG 968
Query: 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI---DSERMV 1086
Y AT +R RN+PI+A+TA A+ D +KC GM+ YL+KP+ + ERM+
Sbjct: 969 YSATRALRLLPEP--LRNVPIIAMTASAIKGDREKCREAGMSDYLSKPVVTANLERML 1024
>gi|427725989|ref|YP_007073266.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
gi|427357709|gb|AFY40432.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
Length = 837
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 147/265 (55%), Gaps = 37/265 (13%)
Query: 405 ELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVC 463
E + LD AR AE ++++KS FLANMSHE+RTPM ++G+L +L D L EQ S V
Sbjct: 435 EQVDELDEARNIAEIASHHKSVFLANMSHEIRTPMNGVLGMLSLLSEDQMLNVEQRSRVE 494
Query: 464 QIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVL 523
+ S+ +LL L+N ILD SK+E+GK+ LE+ +FDL + E + + + +++ L
Sbjct: 495 VAQSSAQSLLFLINDILDFSKIEAGKLALEHLDFDLHRFFERFIPAIAFRAEKKHLKLTL 554
Query: 524 DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRK 583
+L D P VRGD GR QI +NL+ N++KFT G I I+G E T +N
Sbjct: 555 NLKDLEPALVRGDEGRFQQILNNLVGNALKFTEQGEIYIQG--ELTHTEQN--------- 603
Query: 584 KFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 643
+ V DTG GI K ++F++F Q D STTR
Sbjct: 604 -------------------------IVFHGLVRDTGIGIAPDKLNSLFDAFTQEDRSTTR 638
Query: 644 KHGGTGLGLSIVRTLVNKMGGEIKV 668
K+GGTGLGL+I + L + MGGEI V
Sbjct: 639 KYGGTGLGLAITKQLCDLMGGEIHV 663
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 18/135 (13%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R LLAED + Q+V + +K G T+ + +G +A+E L S
Sbjct: 710 RFLLAEDNQVNQLVMRGLFKKRGLTIEIANNGQEALEQLQ------------------SS 751
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D +DLI MDCQMP MDGYEAT IR ++ + +PI+A+TA+AM D +KCL
Sbjct: 752 AIDNKPYDLIFMDCQMPVMDGYEATQLIRNGQAGEQYQAVPIIAITANAMKGDREKCLSS 811
Query: 1071 GMNAYLTKPIDSERM 1085
GMN Y++KPI+ + +
Sbjct: 812 GMNDYISKPINPQEL 826
>gi|409993593|ref|ZP_11276729.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|409935558|gb|EKN77086.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1035
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 151/269 (56%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++ R A + +KS+FLA MSHE+RTPM+ ++G++E+L LT +Q I + +
Sbjct: 356 VETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQT-HLTPQQKDYTPTIYRRA 414
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILDLSK+E+G+ LE+ +FDLQ LE +VD+ SV+ + +E ++ L NI
Sbjct: 415 KHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLEPNI 474
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GD R+ Q+ NL+NN+IKFT SGHIIIR
Sbjct: 475 PRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIR-------------------------L 509
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+L Q +++ + F ++DTG GI +F+ F +T R++ GTG
Sbjct: 510 TPRLINQ----------DQINIYFSIEDTGLGISDELQPQLFQPFSPASSATNRQYSGTG 559
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGLSI + LVN MGGEI V + G++
Sbjct: 560 LGLSICQHLVNLMGGEIGVNSQEGDGSIF 588
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 25/142 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q V L+++G T V DG ++ L
Sbjct: 781 LKILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHL-------------------- 820
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+T +DLILMDCQMP +DGYE T IR+ ++ R I+ALTA M +D +C+
Sbjct: 821 ---ETQHYDLILMDCQMPILDGYETTARIRRRQNSQ--RPPIIIALTASVMPSDRDRCIE 875
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GM+ Y+TKPID + +V+ I R
Sbjct: 876 AGMDDYITKPIDLQALVNLINR 897
>gi|344341261|ref|ZP_08772182.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
gi|343798841|gb|EGV16794.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
Length = 1247
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 150/273 (54%), Gaps = 27/273 (9%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE +N KS FL+NMSHE+RTPM +IG+LE++ D L+ EQ + S+ +LL
Sbjct: 376 RAEDANRAKSAFLSNMSHEIRTPMNGVIGMLELML-DTALSEEQRDYAESARISARSLLG 434
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N ILD SK+E+GK++L+ EFDL+ +L+EL + + + + V ++S+ +P +R
Sbjct: 435 LINDILDFSKIEAGKLDLDLVEFDLRNQLQELEAIVARRARAKELRLVCEVSEEVPARLR 494
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD GR+ QI NL++N+IKFT SG + +R C + + P
Sbjct: 495 GDAGRLRQILVNLVDNAIKFTPSGEVEVRVEVCPQAAGAGSGNAVPA------------- 541
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+ + L F V DTG GI K +F SF Q + TR++GGTGLGL+
Sbjct: 542 ------------PDAVLLGFSVRDTGIGIPADKLGLLFASFSQVESGITRRYGGTGLGLA 589
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
I + LV MGGEI V G+ + L L A
Sbjct: 590 ISKQLVELMGGEIGVESVRGQGSTFRFSLRLQA 622
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 28/143 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+G IL+AED L Q VA ++LE+ GA V++ +G +AV +
Sbjct: 657 FDGASILVAEDHALNQEVARRLLERTGARVTLANNGAEAVAMV----------------- 699
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
D FDL+LMD QMP MDG+EAT I + + +PI+A +A M D +
Sbjct: 700 ------DAHAFDLVLMDLQMPVMDGFEATRVIHERHPQ-----LPIIAFSAAVMEEDLAR 748
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
G+ A+L KPIDS + T+
Sbjct: 749 ARAAGVAAHLAKPIDSGALYRTL 771
>gi|417949399|ref|ZP_12592535.1| hybrid sensory histidine kinase BarA [Vibrio splendidus ATCC 33789]
gi|342808357|gb|EGU43517.1| hybrid sensory histidine kinase BarA [Vibrio splendidus ATCC 33789]
Length = 937
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 156/277 (56%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ L+N Q + I++S+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--HLSNSQTDYLQTIERSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q LEE+V++ + +E L + +P
Sbjct: 338 NLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 AGVVGDPLRIQQILTNLVGNSIKFTERG---------NIDIS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q+ EDN + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VELRSQS-------EDN-IELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L +
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSTT 519
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+I MD QMP+MDG A I+K + + P++A+TAHAM + + L GM+ Y
Sbjct: 709 QFDIIFMDIQMPQMDGVTACQNIKKLANN---ASTPVIAVTAHAMTGERDRLLEAGMDDY 765
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 766 LTKPIE-EHVLQQVL 779
>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 540
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 161/287 (56%), Gaps = 39/287 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
V++ LR EL L A+ AE +N KS FLA+MSHE+RTPM I+G+LE+L+ D L
Sbjct: 125 VTESKVLREEL---LRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTD-LD 180
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+Q + +++S+ L+ LN++L+ S++++ + ELE+ +FDL + L ++F+++
Sbjct: 181 PQQEEYLRIVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAR 240
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+ETVLDL +P VRGDP R+ QI +NL++N++KFT G I + +
Sbjct: 241 EKGLETVLDLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEKGWIAL-----------SI 289
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
FP ED L L F V DTG GI + K +F+ F
Sbjct: 290 RRFPP------------------------EDGGLWLEFGVVDTGIGIPREKRHRIFQGFG 325
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
Q D STTR++GG+GLGL+IVR +V+ GG + + + G+ + L
Sbjct: 326 QLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLESEEGKGSSFHVRL 372
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 953 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1012
LL E P+ Q + + + G + +VP G +A+EA+
Sbjct: 406 LLVEGHPVSQRLVAALFARRGWNLDLVPGGEEAMEAVREK-------------------- 445
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
+DLIL+D +P MDG E +R+ + VALTA + + K+ L G
Sbjct: 446 ---DYDLILLDVDLPGMDGLETVRRLRRRLKRPRPVPL--VALTAQDLPEERKRGLEAGF 500
Query: 1073 NAYLTKPIDSERMVSTILRLTKNMP 1097
+A++TKP+ ++ + RL P
Sbjct: 501 DAWVTKPLRVRELLVVLSRLLTGDP 525
>gi|376003859|ref|ZP_09781659.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375327679|emb|CCE17412.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 946
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 153/269 (56%), Gaps = 36/269 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++ R A + +KS+FLA MSHE+RTPM+ ++G++E+L LT +Q I +S+
Sbjct: 267 IETRNAALNAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQT-HLTLQQKDYTQTIYRSA 325
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILDLSK+E+G+ LE+ +FDLQ LE +VD+ +V+ + +E ++ L N+
Sbjct: 326 KHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEPNL 385
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR ++GD R+ Q+ NL+NN+IKFT SGHIIIR T + ++
Sbjct: 386 PRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRV------TPRVISQ------------ 427
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ + + F ++DTG GI +F+ F +T R++GGTG
Sbjct: 428 -----------------DHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTG 470
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
LGLSI + LVN MGGEI V + G++
Sbjct: 471 LGLSICQHLVNLMGGEIGVKSQEEEGSIF 499
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 25/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
PC + ++++ R L+ILLAED + Q V L+++G V DG ++ L
Sbjct: 675 PCCHLSQTNDKLRASIPLKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHL--- 731
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
+T +DLILMDCQMP +DGYE T IR S++ R I
Sbjct: 732 --------------------ETQHYDLILMDCQMPILDGYETTARIRGSQNSQ--RPPII 769
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ALTA M +D +CL VGM+ Y+TKPID + +V+ I R
Sbjct: 770 IALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINR 808
>gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
Length = 937
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 156/277 (56%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ L+N Q + I++S+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--HLSNSQTDYLQTIERSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q LEE+V++ + +E L + +P
Sbjct: 338 NLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLKIDPKVP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 AGVVGDPLRIQQILTNLVGNSIKFTERG---------NIDIS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q+ EDN + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VELRSQS-------EDN-IELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L +
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSTT 519
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+I MD QMP+MDG A I+K + N P++A+TAHAM + + L GM+ Y
Sbjct: 709 QFDIIFMDIQMPQMDGVTACQNIKKLANN---ANTPVIAVTAHAMTGERDRLLEAGMDDY 765
Query: 1076 LTKPIDSERMVSTIL 1090
LTKPI+ E ++ +L
Sbjct: 766 LTKPIE-EHVLQQVL 779
>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 927
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 156/277 (56%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ +LTN Q + I+KS+
Sbjct: 279 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--KLTNSQADYLQTIEKSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ Q+ LEE+V + + +E L + IP
Sbjct: 337 NLLNIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NL+ NSIKFT G N+D S
Sbjct: 397 AGLVGDPLRIQQVLTNLVGNSIKFTERG---------NIDIS------------------ 429
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q +A+ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 430 VELRSQKEDAVE--------LQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV++MGGEI + + G+ L L ++
Sbjct: 482 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNST 518
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
+T FD+ILMD QMP MDG A +I+++E N P++A+TAHAM+ + + LG GM
Sbjct: 704 ETQHFDIILMDIQMPHMDGVTACGKIKQTELN---ANTPVIAVTAHAMSGERDRLLGAGM 760
Query: 1073 NAYLTKPIDSERMVSTILRLTKN 1095
+ YLTKPI+ + ++ N
Sbjct: 761 DDYLTKPIEEHVLQQVLMHWNPN 783
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 58/417 (13%)
Query: 312 YGSKVPPGHVIHVQNAKLGH--KQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYK 369
YGS P +H+ + G +++ M F + LP +
Sbjct: 356 YGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLP--------------------WS 395
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
+II + ++ +L++G I L + E R + + +AEA++ KSQFLA
Sbjct: 396 AIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRV----MRELKGQAEAADVAKSQFLAT 451
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM ++G+L++L D +L Q V ++S L+ L+N +LDL+K+ESG+
Sbjct: 452 VSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGR 510
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ELE FD++ L+ ++ +F + +E + +SD +P + GDP R QI +NL+
Sbjct: 511 IELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVG 570
Query: 550 NSIKFTSSGHIIIR------------GWCENLDTSKNTAEFPTDRKK-------FGRAFR 590
NS+KFT GHI ++ +C D S + E D G
Sbjct: 571 NSMKFTEQGHIFVQVHLVKELSRKGNNFC---DVSAHNREILYDSDNSMLWNTLSGLEVA 627
Query: 591 TKLKQQANNAMNFR----EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ N M F+ E + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 628 DSWRSLENFTM-FKNSNGETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYG 686
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL----GASSESKQIYDADFP 699
GTG+GLSI + LV MGGEI K+ G+ + G + K+ Y P
Sbjct: 687 GTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTP 743
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 43/196 (21%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R I R+ +G +R+ S + S + +L G +IL+ +D + + VA L+
Sbjct: 870 RLSTIVACLRKTLGVGVTRQ----QSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSLK 925
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K G+TV+ V G A++ L P T FD MD QMP+MD
Sbjct: 926 KYGSTVTCVDSGSDAIDMLK-----------------PPHT-----FDACFMDVQMPEMD 963
Query: 1031 GYEATIEIRKSE---------SEHGARN--------IPIVALTAHAMNADEKKCLGVGMN 1073
G+EAT IR E E A N +PI+A+TA + A +KC+ GM+
Sbjct: 964 GFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMD 1023
Query: 1074 AYLTKPIDSERMVSTI 1089
Y++KP + +++ S +
Sbjct: 1024 GYVSKPFEEQQLYSAV 1039
>gi|383789962|ref|YP_005474536.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383106496|gb|AFG36829.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 993
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 156/279 (55%), Gaps = 36/279 (12%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
++++L+A + S DA+ +AE++N KS+FLANMSHE+RTP+ +IG ++LK+ L+
Sbjct: 346 RQLELKAVMQSLDDAKDRAESANRAKSEFLANMSHEIRTPLNGVIGFTDLLKTT-PLSAV 404
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q V +S + LL ++N ILD SK+E+G ++LE + D+ LE +D+ Q
Sbjct: 405 QQQYVDNAYESGHTLLGIVNDILDFSKIEAGMLQLEKIKTDIFHLLETSIDLVRFQAGEK 464
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
N+E +L + ++PR V DP R+ Q+ +NL++N++KFT G I ++ E LD + T
Sbjct: 465 NLELLLQVDQSLPRFVLTDPIRLKQVLANLLSNAVKFTQQGEIELQVKYEPLDGTNGT-- 522
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
L F V DTG GI + + E +F++F Q
Sbjct: 523 ---------------------------------LSFFVRDTGIGITEKQREKLFKAFSQA 549
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
D STTR+ GGTGLGL I +VNK+GG+I V GT
Sbjct: 550 DSSTTRQFGGTGLGLIISELIVNKLGGKILVDSTEGEGT 588
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 889 HQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILE 948
H+K + F P +S +H + H GS ++ +N+ + +
Sbjct: 705 HRKCEELDIRFRLTKPVKSHD-----LHAYLSQVH--GSYQKPVQNVDANAPQPAPAVFK 757
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
IL+AED P+ ++ ++ ++ V++ + V+A+ M E
Sbjct: 758 SANILIAEDVPMNMLLIKTLIARLYPDVTI-HEAHHGVDAVKLMKEVEP----------- 805
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+LI MD QMP++DG AT +IR E E G ++PI+ALTA A+ ++ KC+
Sbjct: 806 ---------ELIFMDVQMPQLDGLGATKQIRALEKERGT-HVPIIALTAGALQDEKDKCI 855
Query: 1069 GVGMNAYLTKPIDSERM 1085
GM+ +LTKP++ R+
Sbjct: 856 AAGMDDFLTKPLEKRRI 872
>gi|427725909|ref|YP_007073186.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
gi|427357629|gb|AFY40352.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
Length = 785
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 158/267 (59%), Gaps = 30/267 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I +A+ A+ +NN K++FL+NMSHELRTP+ A++GL+++LKS + L + S
Sbjct: 375 LEQQNIDLFEAKEIADQANNAKTEFLSNMSHELRTPLNAVLGLVQLLKSSNNLNALERSD 434
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + S LL L+ ILD+SK+ESGKMEL+ E L+ L++++ + VQ +N ++
Sbjct: 435 LQTVHDSGIHLLYLIEDILDISKIESGKMELQFQEIHLETFLKKIIAIIQVQANNKKLDL 494
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ + S+++P+N+R D R+ Q+ NL+NN++KFT GH+I R + + ++T
Sbjct: 495 ICEFSEDLPKNIRADRKRLKQVLINLLNNAVKFTKKGHVIFRVYTDRIETG--------- 545
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+++N+ + R FE++D+G GI K E++F FEQ T
Sbjct: 546 ------------TEKSNSFASIR--------FEIEDSGVGIRPEKLESIFLPFEQTG-ET 584
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKV 668
K GTGLGL+I + ++ +GG+I V
Sbjct: 585 KFKVKGTGLGLAISQKIIKMIGGKITV 611
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 30/157 (19%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
SS N S K++ L ILLAED + Q VA ++LE++G + +V +GL+ +E + +
Sbjct: 646 SSVNDQSLAKKL--PLNILLAEDNMVNQKVASRVLERLGYRIDIVNNGLEVLEITRKQM- 702
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
+D++LMD QMP+MDG EAT + SE I+A
Sbjct: 703 ----------------------YDVVLMDIQMPEMDGIEATKHLLDSEYRP-----YIIA 735
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
LTA+AM++D CL GMN YL+KPI+ E +V + R
Sbjct: 736 LTANAMSSDRLVCLAAGMNDYLSKPINIELLVEALWR 772
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 171/328 (52%), Gaps = 34/328 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV +LVI + I +++ K+ + ++ + +AEA++ KSQFLA +SHE+
Sbjct: 621 ITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEI 680
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q S L+ L+N +LD +K+ESG++ELE
Sbjct: 681 RTPMNGVLGMLKMLM-DSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEA 739
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L+ ++ +FS + +E + +SD +P V GDPGR QI +NL+ NSIKF
Sbjct: 740 VPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKF 799
Query: 555 T-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN----------- 602
T GHI + ++ + P R + R + +NN+ N
Sbjct: 800 THDKGHIFV-----SVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRW 854
Query: 603 --------------FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
E + + L V+DTG GI +F F Q D ST+R +GGT
Sbjct: 855 KSWEKFKKLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGT 914
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G+GLSI + LV+ MGGEI ++ PGT
Sbjct: 915 GIGLSISKRLVDLMGGEIGF--ESEPGT 940
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 49/199 (24%)
Query: 911 REDLIHTMFRERHQIGSSR---RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACK 967
R ++ + F+E IG + R +P + N +L RIL+ +D + + VA
Sbjct: 1096 RLSVLISCFQEVFGIGKRKQANRGKPLTLGN-------LLREKRILVVDDNAVNRRVAEF 1148
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
L+K GA V+ V G + +LL P FD MD QMP
Sbjct: 1149 ALKKYGAIVTCVDSG-----------------KAALLMLKPPHN-----FDACFMDLQMP 1186
Query: 1028 KMDGYEATIEIRKSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGV 1070
+MDG+ AT EIR+ ES+ R + PI+A+TA + A+ ++C+
Sbjct: 1187 EMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKC 1246
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ Y+ KP + +++ S +
Sbjct: 1247 GMDGYVAKPFEEDQLYSAV 1265
>gi|388598994|ref|ZP_10157390.1| histidine kinase [Vibrio campbellii DS40M4]
Length = 641
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 44/295 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS +
Sbjct: 233 ARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDEQQKDFVSIINSSSNS 291
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 292 LMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPL 351
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+GD GR+ Q+ SNL++N++KFT GH+ L S+ +
Sbjct: 352 EVKGDMGRLKQVLSNLLSNAVKFTERGHV-------KLMVSQVS---------------- 388
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R+ + ++ F V D+G GI + +TVFE F+Q D STTRK+GGTGLG
Sbjct: 389 ------------RKTDVASVHFRVVDSGIGIAKEHQQTVFEKFQQADGSTTRKYGGTGLG 436
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL------GASSESKQIYDADFPN 700
L+I +LV MGGEI++ + G+ + + L S ++ ++ DFPN
Sbjct: 437 LAICNSLVEVMGGEIRLTSEPGLGSYFEFTIPLNIVCDKSISPQTPNVF--DFPN 489
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALRQCQ--------------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
T +FDLILMDCQMP MDG+ AT IRK E G + +PI+AL+A+ + D++ C G
Sbjct: 550 --THQFDLILMDCQMPVMDGFIATENIRKM-GEWG-QQVPIIALSANVIKEDQQSCFDAG 605
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 606 MNEFVAKPVTKERLQQIFERYLPESLQTRSNPKQAT 641
>gi|350551908|ref|ZP_08921118.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795838|gb|EGZ49631.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1531
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 147/278 (52%), Gaps = 36/278 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
KA+ ++ KS+FLANMSHE+RTPM +IG+ +L D +L EQ +K S+ ALL
Sbjct: 867 KAQQASQAKSEFLANMSHEIRTPMNGVIGMTGLLL-DTELNGEQRHYANTVKASAEALLA 925
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N ILD SK+E+GK++LE +FDL+ L++ M + + +E + ++P +
Sbjct: 926 LINDILDFSKIEAGKLDLETLDFDLRTTLDDFAMMMAFKAEEKGLEFICAADVDVPVLLC 985
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI +NL++N+IKFT G + +R C + T TA
Sbjct: 986 GDPGRLRQILTNLVSNAIKFTHQGEVAVRVSC--VHTDAQTAH----------------- 1026
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
L F V DTG GI + K + +F+SF Q D S TR+ GGTGLGL+I
Sbjct: 1027 ----------------LRFSVRDTGIGIPKDKMDRLFQSFSQVDASITREFGGTGLGLAI 1070
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
R L MGGEI V G+ + LG Q
Sbjct: 1071 SRQLAILMGGEIGVDSVQGEGSTFWFTVKLGCQEGDAQ 1108
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 25/149 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILLAED + Q VA IL K G V +G++A+ AL S
Sbjct: 1275 RILLAEDNIINQQVALGILRKFGLRADAVANGMEALSAL-------------------SS 1315
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR--NIPIVALTAHAMNADEKKCL 1068
P +DL+LMD QMP+MDG +AT IR++E++ +IPI+A+TAHAM D ++CL
Sbjct: 1316 LP----YDLVLMDVQMPEMDGLQATQWIRENEAQMAGAVAHIPIIAMTAHAMQGDRERCL 1371
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ YL KP+ + ++ + + P
Sbjct: 1372 QAGMDDYLQKPVSPDALLQILQKWLPRHP 1400
>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
Length = 589
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 165/293 (56%), Gaps = 38/293 (12%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
VSKE++ R E + A+ A+ +N KS+FLA+MSHE+RTPM AIIG+ ++L + LT
Sbjct: 47 VSKELQRRVEELQR--AKDAADVANRAKSEFLASMSHEIRTPMNAIIGMADLL-WETTLT 103
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
EQ + +++ +LL L+N ILDLSKVESG+++L++ +FDL + +++ +M +++ +
Sbjct: 104 PEQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDLSELIDKTSEMLALRAN 163
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E V L++++P ++ GDP R++QI NL+ N+IKFT G +++ + N
Sbjct: 164 EKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKGSVVM--------SITND 215
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
E T A+ F + DTG G+ K +T+FE+F
Sbjct: 216 PELRTPG---------------------------AIRFSISDTGIGVPHDKIKTIFETFT 248
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
Q + R++GGTGLGLSI + L MGG I V + G+ + LG +
Sbjct: 249 QAHSTIARQYGGTGLGLSISQQLAALMGGRIWVESRLGEGSTFHCLVRLGVQT 301
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 910 RREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKIL 969
RR DL T+ + S P ++ + Q R LRILL ED+P Q++ L
Sbjct: 427 RRSDLQQTISIALGRSKSGFSPSPQGAALQAPPQGR---SLRILLVEDSPDNQVLIQSYL 483
Query: 970 EKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029
+ V + +G V +DLILMD QMP M
Sbjct: 484 KNTIHRVDLADNGQIGVAKFQ-----------------------NGHYDLILMDMQMPVM 520
Query: 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
DG AT IR+ E E G + I+ALTA A+ + + G NA++TKP+ ++ +
Sbjct: 521 DGLTATRTIRRWEQEQGLPAVQIIALTALALKEESARIFEAGCNAHMTKPLKRTTLLELL 580
Query: 1090 LRLTKN 1095
L K
Sbjct: 581 LAYEKT 586
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GLR L+ +D P +++ + L GATV G QA+EAL L +
Sbjct: 314 LAGLRCLVVDDYPTNRLILRETLFGWGATVVEADSGEQAMEALEVSLKS----------- 362
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
D P F L+L+DC+MP MDG+E I + ++ ++ I+ L + D K
Sbjct: 363 ------DAP-FTLLLLDCRMPGMDGFEV---IERIHADPRLSSLTIIMLASDRWADDIAK 412
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+G+ YL KPI + TI
Sbjct: 413 TYDLGLGGYLVKPIRRSDLQQTI 435
>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1407
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 181/339 (53%), Gaps = 45/339 (13%)
Query: 356 REYIMGKADERAYKTLIILISA--SVCILVIGCICILILTNGVSKEMKLRAELISHLDAR 413
RE+ + D + L+ L SA S+ ++ G +C++ +S + LI +AR
Sbjct: 620 REWTFVRHDGTEFIGLL-LTSAVYSMDSVISGYLCVI---QDISGRRETEQNLI---NAR 672
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
AE ++ KS FLANMSHE+RTPM IIG+ + + D LT Q + +I++S LL
Sbjct: 673 TLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTD-LTPRQRDYLKKIQQSGQNLL 731
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
R++N ILD+SK+E+GK+ +E++EF+L+ L ++V + + + +E +LD++ ++P N+
Sbjct: 732 RIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLELILDIASDVPVNL 791
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD R+ Q+ N +N++KFT G I+I +L
Sbjct: 792 LGDSLRLGQVLLNYASNALKFTEQGEIVIA---------------------------VRL 824
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
++ R ++++ L FEV DTG G+ + +F F QGD STTR++GGTGLGL+
Sbjct: 825 RE--------RSEDQVLLYFEVRDTGIGLSSEQISRLFTPFTQGDASTTRRYGGTGLGLA 876
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
I R L + MGGE V G+ LG K+
Sbjct: 877 ICRQLADLMGGEAGVNSVEGQGSTFWFTARLGTGGIKKR 915
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 45/177 (25%)
Query: 925 IGSSRRD--------QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATV 976
IG+ R D QP N+ S G RILL ED Q +A ++L+++ V
Sbjct: 1048 IGAEREDLHISCVPTQPAEDMNTIS-------GARILLVEDNEFNQQIAMELLQQMHLAV 1100
Query: 977 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
+ +G EALN + + +DL+LMD QMP MDG AT+
Sbjct: 1101 DLAENG---AEALNLL--------------------EKNNYDLVLMDMQMPVMDGISATL 1137
Query: 1037 EIRKSESEHGAR--NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
E+R+ AR +P+VA+TA+ + AD ++CL GMN +L+KPI+ E + T+L+
Sbjct: 1138 ELRRQ-----ARFAELPVVAMTANVLQADRQRCLDAGMNDFLSKPIEPELLWQTLLK 1189
>gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
Length = 828
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 161/287 (56%), Gaps = 37/287 (12%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + + I H A+ A ++N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 302 NRVVEEKQRQTDEILH--AKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 358
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L++ Q V I SS LL LLN ILDLSK+ESG++EL E D+++ + + + +F +
Sbjct: 359 LSSHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSK 418
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E ++L++NIP V D R+ Q+ +NL++N++KFT SGHI +D S
Sbjct: 419 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHI-------RVDVSY 471
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ K+ G L F+V+DTG GI+Q K T+FE
Sbjct: 472 D----ELSEKECG-----------------------VLMFKVEDTGIGIEQDKLTTIFEP 504
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT +
Sbjct: 505 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIATSTKGVGTCFEF 551
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+ +
Sbjct: 706 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALEAITK------------------- 746
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD ILMDC MP MDG AT EIR+ E + G I+ALTA + D C
Sbjct: 747 ---GEEFDAILMDCMMPVMDGLTATKEIRRWEKKAGREKTTIIALTASVLEEDIHNCFAA 803
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 804 GMDAYLPKPYKSNQL 818
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 148/276 (53%), Gaps = 36/276 (13%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE ++ KS+FLANMSHE+RTPM +IG+ +L D L +EQ ++ S +LLR
Sbjct: 852 RAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLLLETD-LDDEQRHFAEVVRASGESLLR 910
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N ILD SK+E+GK++LE +FDL LE+ +++ +E + D +P +R
Sbjct: 911 LINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRAQEKGLEFLCDADPEVPAFLR 970
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI +NL N+IKFT SG + IR + L+
Sbjct: 971 GDPGRLRQILTNLAGNAIKFTPSGEVAIR--------------------------VSVLE 1004
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
++ + + L F V DTG GI + K +F+ F Q D STTR++GGTGLGL+I
Sbjct: 1005 ERTEDVL---------LRFAVRDTGIGIPEDKLGLLFDKFSQVDASTTRQYGGTGLGLAI 1055
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
+ L M GE+ V+ + G+ L ES
Sbjct: 1056 SKQLAALMDGEVGVISQAGKGSEFWFTARLAKQPES 1091
Score = 96.3 bits (238), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 24/150 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RILLAED Q VA IL+K+G V +G +AV AL +
Sbjct: 1258 VRILLAEDNTTNQQVALGILKKMGLHADAVANGAEAVTAL-------------------A 1298
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
P +DL+LMD QMP MDG EAT IR S S +PI+A+TA AM D+++CL
Sbjct: 1299 SIP----YDLVLMDVQMPVMDGLEATRAIRASSSAVRNPGLPIIAMTAGAMRGDQEQCLD 1354
Query: 1070 VGMNAYLTKPIDSERMVSTILR-LTKNMPS 1098
GMN Y++KP+ + + R L + +PS
Sbjct: 1355 AGMNDYVSKPVSPAILAEVLARWLPRELPS 1384
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP S+ S +L G+R+L+ +D + + L G + DG EAL R
Sbjct: 1088 QPESAHRQLSLPADLL-GVRVLIVDDNATNREILMTRLTSWGMRPAEARDG---PEALRR 1143
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
+ A + PD F + ++D QMP+MDG I R
Sbjct: 1144 LAGA-------------LDEPDP--FRVAVIDMQMPEMDGETLGRAIGADSRLADTR--- 1185
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI-LRLTKNMPSE 1099
+V LT+ M D ++ +G AY+TKPI E + + + L LT P+E
Sbjct: 1186 MVMLTSLGMRGDARRFQELGFAAYITKPIRHEELKAVLSLVLTARSPAE 1234
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 58/417 (13%)
Query: 312 YGSKVPPGHVIHVQNAKLGH--KQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYK 369
YGS P +H+ + G +++ M F + LP +
Sbjct: 508 YGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLP--------------------WS 547
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
+II + ++ +L++G I L + E R + + +AEA++ KSQFLA
Sbjct: 548 AIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRV----MRELKGQAEAADVAKSQFLAT 603
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM ++G+L++L D +L Q V ++S L+ L+N +LDL+K+ESG+
Sbjct: 604 VSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGR 662
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ELE FD++ L+ ++ +F + +E + +SD +P + GDP R QI +NL+
Sbjct: 663 IELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVG 722
Query: 550 NSIKFTSSGHIIIR------------GWCENLDTSKNTAEFPTDRKK-------FGRAFR 590
NS+KFT GHI ++ +C D S + E D G
Sbjct: 723 NSMKFTEQGHIFVQVHLVKELSRKGNNFC---DVSAHNREILYDSDNSMLWNTLSGLEVA 779
Query: 591 TKLKQQANNAMNFR----EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ N M F+ E + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 780 DSWRSLENFTM-FKNSNGETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYG 838
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL----GASSESKQIYDADFP 699
GTG+GLSI + LV MGGEI K+ G+ + G + K+ Y P
Sbjct: 839 GTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTP 895
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 43/196 (21%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R I R+ +G +R+ S + S + +L G +IL+ +D + + VA L+
Sbjct: 1022 RLSTIVACLRKTLGVGVTRQ----QSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSLK 1077
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K G+TV+ V G A++ L P T FD MD QMP+MD
Sbjct: 1078 KYGSTVTCVDSGSDAIDMLK-----------------PPHT-----FDACFMDVQMPEMD 1115
Query: 1031 GYEATIEIRKSE---------SEHGARN--------IPIVALTAHAMNADEKKCLGVGMN 1073
G+EAT IR E E A N +PI+A+TA + A +KC+ GM+
Sbjct: 1116 GFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMD 1175
Query: 1074 AYLTKPIDSERMVSTI 1089
Y++KP + +++ S +
Sbjct: 1176 GYVSKPFEEQQLYSAV 1191
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 15/324 (4%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ S+ LVI + I+ + ++ + +++AE ++ KSQFLA +SHE+
Sbjct: 375 ITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEI 434
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q V + S L+ L+N +LD +K+ESGK+ELE
Sbjct: 435 RTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEV 493
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ ++++ +F + +E + +SD +P+ + GDPGR+ QI +NL+ NSIKF
Sbjct: 494 VPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKF 553
Query: 555 TSSGHIIIR-------GWCENLDT----SKNTAEFP-TDRKKFGRAFRTKLKQQANNAMN 602
T GHI + C ++T + + +P +RK+ FR ++ ++ M
Sbjct: 554 TEKGHIYLTVHVVEEIMHCLEVETGTQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMP 613
Query: 603 FR--EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
F + ++L V+DTG GI VF F Q PS R HGGTG+GLSI + LV
Sbjct: 614 FAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVG 673
Query: 661 KMGGEIKVVKKNSPGTLMQLYLLL 684
M GEI K G+ +L
Sbjct: 674 LMKGEIGFSSKPQVGSTFTFTAVL 697
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L RI++ +D + VA L+K GA V+ G +A+ L
Sbjct: 859 LLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLK--------------- 903
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH--------------GARN-- 1049
P FD MD QMP+MDG+EAT IR E + G R
Sbjct: 904 --PPHN-----FDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWR 956
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A ++CL M+ Y++KP + E++ + R N
Sbjct: 957 TPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFLN 1002
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 171/328 (52%), Gaps = 34/328 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV +LVI + I +++ K+ + ++ + +AEA++ KSQFLA +SHE+
Sbjct: 660 ITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEI 719
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q S L+ L+N +LD +K+ESG++ELE
Sbjct: 720 RTPMNGVLGMLKMLM-DSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEA 778
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L+ ++ +FS + +E + +SD +P V GDPGR QI +NL+ NSIKF
Sbjct: 779 VPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKF 838
Query: 555 T-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN----------- 602
T GHI + ++ + P R + R + +NN+ N
Sbjct: 839 THDKGHIFV-----SVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRW 893
Query: 603 --------------FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
E + + L V+DTG GI +F F Q D ST+R +GGT
Sbjct: 894 KSWEKFKKLXCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGT 953
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G+GLSI + LV+ MGGEI ++ PGT
Sbjct: 954 GIGLSISKRLVDLMGGEIGF--ESEPGT 979
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 49/199 (24%)
Query: 911 REDLIHTMFRERHQIGSSR---RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACK 967
R ++ + F+E IG + R +P + N +L RIL+ +D + + VA
Sbjct: 1135 RLSVLISCFQEVFGIGKRKQANRGKPLTLGN-------LLREKRILVVDDNAVNRRVAEF 1187
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
L+K GA V+ V G + +LL P FD MD QMP
Sbjct: 1188 ALKKYGAIVTCVDSG-----------------KAALLMLKPPHN-----FDACFMDLQMP 1225
Query: 1028 KMDGYEATIEIRKSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGV 1070
+MDG++AT EIR+ ES+ R + PI+A+TA + A+ ++C+
Sbjct: 1226 EMDGFKATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKC 1285
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ Y+ KP + +++ S +
Sbjct: 1286 GMDGYVAKPFEEDQLYSAV 1304
>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
Length = 833
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 160/264 (60%), Gaps = 12/264 (4%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+R AEAS K+QFLANMSHELRTPM ++G+L +L + QL+++Q V +S L
Sbjct: 295 KRVAEASAEDKAQFLANMSHELRTPMHGVLGMLSLLL-ETQLSSDQQHYVEVAHESGNIL 353
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L LLN +LDLSK+E K+ LE EFDL++ +EE+V + ++ +E V+ + ++P
Sbjct: 354 LELLNNVLDLSKIEHNKLALERVEFDLRQAIEEVVVILGESANSKLLELVVWQNASVPSR 413
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
V GDP R+ QI NL+ N+IKFT+ GH+ I S+NT D + F+ +
Sbjct: 414 VVGDPIRLKQIVFNLLGNAIKFTTQGHVEISYAV----ISENTRRGVVDSAEAD--FQAQ 467
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
+Q + ++ ++L + F+V DTG G+ + E +FE+F Q D +TTR +GG+GLGL
Sbjct: 468 -EQDVSESVG----DELWIRFDVSDTGVGLSEDVQEKIFEAFTQADSTTTRVYGGSGLGL 522
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGT 676
++ + +V MGG I V + G+
Sbjct: 523 ALCKQIVKLMGGAIGVESELGKGS 546
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 24/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+ ED P+ + VA +L+K+G V +G A++ +
Sbjct: 708 LRILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALKMMQ------------------- 748
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DLILMD QMP MDGY T +R+ E E G R PI+A+TAHA++ D ++C
Sbjct: 749 ----NQAYDLILMDLQMPVMDGYSTTRTVRQWERE-GRRRTPIIAMTAHALSGDRERCAE 803
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ YL KP+ +E +++ +
Sbjct: 804 AGMDDYLAKPVKAELLMAVL 823
>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1582
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 169/317 (53%), Gaps = 38/317 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
+++KA+++N KS FLANMSHE+RTPM AIIG+ + D L +Q + + ++ +S+ +
Sbjct: 830 SKQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETD-LDRKQRNYIDKVNRSAES 888
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+++E +F L+ LE++ D+ + + +E + + ++P
Sbjct: 889 LLGIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLPF 948
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
GDP R+ Q+ +NL NN+IKFT G + I+ + +++
Sbjct: 949 YFNGDPLRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSIN--------------------- 987
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ + L FE+ DTG G+ + + +F++F Q D STTRKHGGTGLG
Sbjct: 988 --------------ETNIELAFEISDTGIGMSKEQQLKLFKAFSQADSSTTRKHGGTGLG 1033
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL-LLGASSESKQIYD-ADFPNTVVVLATVG 709
L I + LV MGG I + G+ + L L AS+ Q +D N V++
Sbjct: 1034 LVISQNLVELMGGVISFESEEGVGSCFKFILPLTPASALETQSFDKVSLENIHVLVVDDN 1093
Query: 710 SMERMIISQWLRKKKVS 726
+ R I + L +S
Sbjct: 1094 ANAREIFANMLEGHGIS 1110
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 26/143 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G IL+AED L + + +L T V +G +A++ L +
Sbjct: 1229 LAGAHILIAEDNDLNRELIVDLLSNNQITSVVAMNGQEAIDCLLK--------------- 1273
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD +LMDCQMP MDGY AT +IR+ E G +PI+A+TA+AM D +K
Sbjct: 1274 --------ESFDGVLMDCQMPVMDGYTATKKIREVE---GLSALPIIAMTANAMAGDREK 1322
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+G GM +++KPI+ + T+
Sbjct: 1323 AIGCGMTDHISKPINVQNTFITM 1345
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P S+ + S K LE + +L+ +D + + +LE G + S+ +G QA+ L +
Sbjct: 1068 PASALETQSFDKVSLENIHVLVVDDNANAREIFANMLEGHGISYSLAANGQQAMALLEQE 1127
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
A+ + ++L+D +MP M G + I+ ES +
Sbjct: 1128 GAS---------------------YQVVLLDWKMPGMSGVDTARAIQ--ESSLITEKPKV 1164
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ +TA+ GV LTKPI S +++TIL
Sbjct: 1165 LMVTAYGREELINLSQGVNFAGVLTKPITSSHLLNTIL 1202
>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1157
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 162/288 (56%), Gaps = 5/288 (1%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ ++E + KSQFLANMSHE+RTPM AIIG+ +L + +LT +Q V + SS A
Sbjct: 410 AKAESEEATRIKSQFLANMSHEIRTPMNAIIGMTGLLLTT-ELTPQQRDFVTTAQSSSEA 468
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+ESG +ELE F+LQ +EE +D+ +++ + +E + P
Sbjct: 469 LLALINDILDLSKIESGSVELEKQAFNLQSCIEESLDILALKAAEKGIELAYGMHPQTPS 528
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL++N++KFT +G +++ + L+ K K
Sbjct: 529 IIVGDVTRLRQILVNLVSNAVKFTQTGEVVVSVTAKELEGDKGDKG----DKGDKGDKGE 584
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
K+ N + K F V DTG GI + + +F+SF Q D STTRK+GGTGLG
Sbjct: 585 KILYTNETCYNLQPATKFEFQFAVKDTGIGIPPDRIDRLFKSFSQVDASTTRKYGGTGLG 644
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
L+I + L MGG + V + + G+ L+ A+++S + +FP
Sbjct: 645 LAIGKQLSEMMGGRMWVESQVNRGSTFYFTLVAAATADSSPMNSDNFP 692
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 46/163 (28%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA +L+++G VV +GL+ ++A+ +R+S
Sbjct: 844 LRILLAEDNGVNQKVALHLLKRIGYQADVVSNGLEVLDAV---------KRKS------- 887
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRK------------SESEHGARNIP------ 1051
+D++LMD QMP MDG AT I + S++ RN P
Sbjct: 888 -------YDVVLMDVQMPLMDGLTATRCICQELSGDGEFGEANQNSQNSDRNQPSKPATS 940
Query: 1052 -----IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I+A+TA+AM D ++CL GM+ YL KPI + ++ +
Sbjct: 941 HKRPRIIAMTANAMQGDREECLNAGMDDYLCKPISLKALIQAL 983
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
SS +S N +G R+L+ +D + + + L+ G + +A + LN
Sbjct: 683 SSPMNSDNFPPQFQGKRLLIVDDNDTYRQILTQQLQSWGMLIYGAASAAEAFDWLN---- 738
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
QG P D+ L+D QMP MDG +IR S + +P+V
Sbjct: 739 ----------QGQP--------LDMALLDMQMPGMDGLTLATKIR---SYSNYQTLPLVL 777
Query: 1055 LTA-HAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
LT+ + + + + V + A+LTKPI ++ S +
Sbjct: 778 LTSINGLERANQTHVPVDLAAFLTKPIKQSQLDSVL 813
>gi|428311673|ref|YP_007122650.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253285|gb|AFZ19244.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1153
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 145/263 (55%), Gaps = 36/263 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++AR A ++ KSQFLANMSHE+RTPM ++G+ E+L D L EQ V ++ S+
Sbjct: 278 VEAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTELLAKTD-LNPEQVDFVQTLRVSA 336
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL LLN ILD SK+E+ +M LE EFDL + +E++ D+ + + +E + + +N+
Sbjct: 337 ENLLTLLNDILDFSKLEASEMRLEIQEFDLNRCIEDVADLLATAAQSKGLELAVLIDNNV 396
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR + GD R+ QI NL+ N+IKFT +G ++I+
Sbjct: 397 PRQLLGDAHRLRQILMNLVGNAIKFTFAGEVVIQ-------------------------- 430
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
++ F L F V DTG GI + + +F+SF Q D S+TR+HGG+G
Sbjct: 431 ---------VSLEFETSTYSELRFSVTDTGIGIAPADQKKLFQSFSQVDTSSTRQHGGSG 481
Query: 650 LGLSIVRTLVNKMGGEIKVVKKN 672
LGL+I + LV MGGEI V +
Sbjct: 482 LGLAICKQLVELMGGEIGVASRG 504
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 58/209 (27%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS-- 1007
++ILL EDTP Q V L+ +G +G +A++ L R L+ + + LL G
Sbjct: 792 VKILLVEDTPTNQKVVLNQLKMLGYEADCAVNGREALDLLTRCLSLAGTSEQKLLPGGDS 851
Query: 1008 -------------------PSETPD--------------TPR------------------ 1016
P TP+ T R
Sbjct: 852 ERDALVMASQWDEARIGEFPHVTPELGVDNAPIVANAWRTLRTAPLEPSRAAIRSLMPSS 911
Query: 1017 ---FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1073
+D+ILMDCQMP MDGYEAT +R E +R ++A+TA+A+ D +KCL M+
Sbjct: 912 AVPYDIILMDCQMPIMDGYEATQHLRAFEG--ASRRTVVIAMTANALVGDREKCLAADMD 969
Query: 1074 AYLTKPIDSERMVSTILRLTKNMPSEATG 1102
Y++KP+ E + + R E+ G
Sbjct: 970 DYISKPVRLEELEQVLERWLPPRVKESAG 998
>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 797
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 202/415 (48%), Gaps = 67/415 (16%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTPM A++G+ E++ D LT EQ+ V I+ S +LL L+N ILDL
Sbjct: 270 KSLFLANMSHEIRTPMNAVLGMTELMLGTD-LTPEQFDFVENIRISGDSLLNLINEILDL 328
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G+M+LE FDL +EE+ + + Q N +E + IP V GD R+ Q
Sbjct: 329 SKLEAGEMQLERLSFDLVSCVEEVATLLAAQAHNKGLEITTLIDPAIPWRVSGDSARLRQ 388
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I +NL+ N+IKFT++G + I L QQ
Sbjct: 389 ILTNLLGNAIKFTNAGEVAIE--------------------------VNILSQQ------ 416
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+ + L F V DTG GI Q + +F F Q D STTR++GGTGLGL+I + LV+ M
Sbjct: 417 ---HDLIKLAFAVIDTGIGISQPNQDKLFMPFSQVDASTTRRYGGTGLGLAICKQLVHLM 473
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMER-MIISQWLR 721
GGEI V + GT L + Q DF +L + + +R +++
Sbjct: 474 GGEIGVESELGEGTRFWFNLPF----DLHQAAQPDFNQLSFILHSSLAGKRFLVVDDNAN 529
Query: 722 KKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781
++ + + W D + + NG A RE ++ E T LID
Sbjct: 530 SRQAIVRQAANW-----------DVVVAEADNGGSALAMLRESVQTEATYDLVLIDS--- 575
Query: 782 VVIDIALLDLSSDLWREQ-LNSLDI----------FHRKAMFAWVVNHQTTSPIK 825
V+ D++ LDL++ + E+ L++L + R A+ + +H T P+K
Sbjct: 576 VLGDMSGLDLAAQIKAEEALSNLQLVFITRSNQGSLARLALDRYFADH-MTKPVK 629
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 26/141 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q VA K+LEK+G V +G Q ++ + R
Sbjct: 667 LKILLAEDNLVNQKVALKMLEKLGYKADVAQNGQQVLQLMAR------------------ 708
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DLILMDCQMP +DGY T EIR E E+ R+ IVA+TA+AM D +KCL
Sbjct: 709 -----TNYDLILMDCQMPLLDGYATTQEIRNREGEN--RHTVIVAMTANAMKEDRQKCLD 761
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ Y++KP+ S++ + IL
Sbjct: 762 AGMDDYISKPV-SKKDIQDIL 781
>gi|444427798|ref|ZP_21223166.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238949|gb|ELU50532.1| histidine kinase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 641
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 44/295 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS +
Sbjct: 233 ARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDEQQKDFVSIINSSSNS 291
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 292 LMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPL 351
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+GD GR+ Q+ SNL++N++KFT GH+ L S+ +
Sbjct: 352 EVKGDMGRLKQVLSNLLSNAVKFTERGHV-------KLMVSQVS---------------- 388
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R+ + ++ F V D+G GI + +TVFE F+Q D STTRK+GGTGLG
Sbjct: 389 ------------RKTDVASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLG 436
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL------GASSESKQIYDADFPN 700
L+I +LV MGGEI++ + G+ + + L S ++ ++ DFPN
Sbjct: 437 LAICNSLVEVMGGEIRLTSEPGLGSYFEFTIPLNIVCDKSISPQTPNVF--DFPN 489
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALRQCQ--------------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
T +FDLILMDCQMP MDG+ AT IRK E G + +PI+AL+A+ + D++ C G
Sbjct: 550 --THQFDLILMDCQMPVMDGFIATENIRKM-GEWG-QQVPIIALSANVIKEDQQSCFDAG 605
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 606 MNEFVAKPVTKERLQQIFERYLPESLQTRSNPKQAT 641
>gi|218887540|ref|YP_002436861.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758494|gb|ACL09393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1177
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 159/287 (55%), Gaps = 19/287 (6%)
Query: 405 ELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVC 463
E + LD A+ + E ++ KS+FLA ++HELRTPM A+IG+++I D L +Q +
Sbjct: 250 ERTTALDTAQARVERASRAKSEFLAGVTHELRTPMNAVIGMVDITLGTD-LAPKQREYLN 308
Query: 464 QIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVL 523
++ S+ +LL ++N +LD SK+E+G++ LE F + LEE+ D+F + + ++E V+
Sbjct: 309 LVRSSARSLLGVVNGVLDFSKLEAGRLALEAIPFRTRDLLEEVTDLFHDRLAIKDIELVV 368
Query: 524 DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT-----SKNTAEF 578
D+ +P + GDP R+ Q+ NL N+ KFT G ++IR + + ++N E
Sbjct: 369 DIDTGVPPVLVGDPLRLRQVLVNLAANAFKFTERGEVVIRVGRADTEANAGAGAENIPEA 428
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
P D T Q A N + L F V DTG GI E +FES+ Q D
Sbjct: 429 PAD--------GTTDSPQTGGAHG----NGVELAFSVRDTGIGIAPEARERLFESYSQAD 476
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
S +R+ GGTGLGLSIVR LV+ MGG++ V + G+ + G
Sbjct: 477 VSVSRRFGGTGLGLSIVRALVHLMGGDVGVDSEPGRGSTFRFTARFG 523
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+LL +D P+ + VA ++L G V VP G A++ L R + G
Sbjct: 807 LRGTRVLLVDDNPINRAVATEMLHAAGVEVEAVPSGETALDTLARSVRPAYGPSE---HG 863
Query: 1007 SPSETP----------------------DTPR--FDLILMDCQMPKMDGYEATIEIRKSE 1042
P E DT FD +L+D QMP MDGY+ IR
Sbjct: 864 EPGEPDRPDGPDGPDGPDRPDGAIVRKTDTQNVAFDAVLLDIQMPGMDGYQTAAAIRARN 923
Query: 1043 SEHGAR---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ G R P++A TA DE+ G+ L KP+D + +++T+ R
Sbjct: 924 ASGGLRLRPGAPVIAFTARVEGEDEEALHRAGIVGRLPKPVDRQELLATLHR 975
>gi|389578386|ref|ZP_10168413.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
gi|389400021|gb|EIM62243.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
Length = 1630
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 146/254 (57%), Gaps = 36/254 (14%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRL 475
AE + KS+FLANMSHE+RTPM IIG+ +L D L++EQ +K S+ ALL L
Sbjct: 954 AEMATRAKSEFLANMSHEIRTPMNGIIGMTGLLLDTD-LSDEQRLFTGNVKASADALLTL 1012
Query: 476 LNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRG 535
+N ILD SK+E+GK+++E +F+L+ L++ M +++ ++E + ++S +P ++G
Sbjct: 1013 INDILDFSKIEAGKLDMEILDFELRPFLDDFAHMMALKAHEKDLELICEVSPEVPGQLQG 1072
Query: 536 DPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQ 595
DPGR+ QI +NL +N+IKFT++G ++I+ LK
Sbjct: 1073 DPGRLRQILTNLTDNAIKFTNAGEVVIQA---------------------------HLKH 1105
Query: 596 QANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 655
Q ++ + F V DTG GI K +FE F Q D S TRK+GGTGLGL+I
Sbjct: 1106 QTK--------EEVLIYFSVKDTGVGIAPEKQGHLFEQFTQVDASITRKYGGTGLGLAIS 1157
Query: 656 RTLVNKMGGEIKVV 669
+ L MGG+I V+
Sbjct: 1158 KKLAQLMGGDIGVI 1171
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 27/156 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RILLAED QIVA ILEK G +V V +G++A+ AL ++
Sbjct: 1370 VRILLAEDNITNQIVAKGILEKFGYSVDAVANGIEAIRALEKI----------------- 1412
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QM ++DG +AT IR + S NIP+VA+TA+AM D +KCL
Sbjct: 1413 ------PYDMVLMDLQMSELDGLKATRMIRNTASNVINPNIPVVAMTANAMAGDREKCLN 1466
Query: 1070 VGMNAYLTKPID----SERMVSTILRLTKNMPSEAT 1101
GMN Y++KP+D +E++ I R+ P +T
Sbjct: 1467 AGMNDYISKPVDPIILAEKIEKWINRIQPRNPERST 1502
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 24/161 (14%)
Query: 932 QPCSSSNSSSNQKRI---LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
QP SS+ + QK + L+ +RIL+ +D + + L +GA VS DG A+E
Sbjct: 1202 QPPSSAETGHEQKIMPDPLKNVRILIVDDNRTNRETLVRQLVGMGAKVSEAADGKAALEK 1261
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
+ R A+ +R +DL ++D QMP M G + + I+K E
Sbjct: 1262 IKR--TAQENR----------------LYDLAILDIQMPGMTGDKLGLAIKK---EAFGA 1300
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+I +V + + D + +G + YLTKP+ + T+
Sbjct: 1301 DIKLVLMLSIGRRGDARYFQSIGFSGYLTKPVRYSELSDTL 1341
>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
Length = 1343
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 166/295 (56%), Gaps = 39/295 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
V+K+ +L ++LI+ A+ +A ++ K +FLANMSHE+RTPM AI+G+ + D L
Sbjct: 572 VTKQKRLESDLIA---AKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTD-LN 627
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
++Q + V I+K+ +LL ++N ILD SK+E+GK+ +E+ +F + L+ + ++ SV+
Sbjct: 628 DKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAK 687
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
+E + D+ N+P ++ GDP R+ QI NL NS+KFT SG IIIR
Sbjct: 688 EKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIR------------ 735
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
A TD + + + F+++DTG G+++ + +F+SF
Sbjct: 736 ARKVTDVNEI-----------------------IEIQFDIEDTGIGMNEEQLGRLFQSFS 772
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
Q D S TRK+GGTGLGL+I ++ V MGG I V + G+ + G S+ S
Sbjct: 773 QADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTIRCGRSNSS 827
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 32/193 (16%)
Query: 897 FEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAE 956
F+ S + P SS + L+ + + +SR + + + L G++ILL E
Sbjct: 943 FDASLVKPINPSSLFDALMEAFGQLEMKRANSREAETIKTQHVD------LTGIKILLVE 996
Query: 957 DTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPR 1016
D + Q VA ILE+ T+ V +G A++ + +
Sbjct: 997 DNMINQEVAKGILEQFNPTIEVADNGQVALDRVQK-----------------------EH 1033
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD++LMD QMP MDG AT +IR+ E+ G +PIVA+TA+AM D K+C GMN ++
Sbjct: 1034 FDIVLMDMQMPVMDGLTATRKIREIEALAG---LPIVAMTANAMERDIKQCKAAGMNDHV 1090
Query: 1077 TKPIDSERMVSTI 1089
+KPID E +++ I
Sbjct: 1091 SKPIDIEELINAI 1103
Score = 40.0 bits (92), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 934 CSSSNSSSNQK----RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
C SNSS ++ IL R+L+ +D + + +L+ + V+ V +G +AV +
Sbjct: 821 CGRSNSSIKEQIAKTTILNDKRVLVVDDNQASRDIMYALLDNLDLRVAAVSNGEEAVYEV 880
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPR--FDLILMDCQMPKMDGYEATIEIRKSESEHGA 1047
E+ D FD+++MD +MP ++G EAT++IR E
Sbjct: 881 --------------------ESADLSNDGFDVVVMDWKMPGINGDEATVKIR----ELSL 916
Query: 1048 RNIPIVAL-TAHAMNAD--EKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+P V L +A+ N+ ++ V +A L KPI+ + ++
Sbjct: 917 NKMPKVILASAYGENSGLINEEVQNV-FDASLVKPINPSSLFDALM 961
>gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25]
Length = 790
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 161/287 (56%), Gaps = 37/287 (12%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + + I H A+ A ++N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 264 NRVVEEKQRQTDEILH--AKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 320
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L++ Q V I SS LL LLN ILDLSK+ESG++EL E D+++ + + + +F +
Sbjct: 321 LSSHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSK 380
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E ++L++NIP V D R+ Q+ +NL++N++KFT SGHI +D S
Sbjct: 381 ATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHI-------RVDVSY 433
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ K+ G L F+V+DTG GI+Q K T+FE
Sbjct: 434 D----ELSEKECG-----------------------VLMFKVEDTGIGIEQDKLTTIFEP 466
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT +
Sbjct: 467 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIATSTKGVGTCFEF 513
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+ +
Sbjct: 668 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALEAITK------------------- 708
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD ILMDC MP MDG AT EIR+ E + G I+ALTA + D C
Sbjct: 709 ---GEEFDAILMDCMMPVMDGLTATKEIRRWEKKAGREKTTIIALTASVLEEDIHNCFAA 765
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 766 GMDAYLPKPYKSNQL 780
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 173/331 (52%), Gaps = 41/331 (12%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+ + + +IG + + + VS +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 330 LQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQAEAADVAKSQFLATVSHEI 389
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM I+G+L++L D +L++ Q + AL+ L+N +LD +K+E+GK+ELE
Sbjct: 390 RTPMNGILGMLQLLL-DTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLELEA 448
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +SD +P V GDPGR Q+ NL+ NS+KF
Sbjct: 449 VPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNSVKF 508
Query: 555 TSSGHIIIR------------GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQA----- 597
T GHI ++ ENL + E K + R+F T +QA
Sbjct: 509 TEEGHIFVQVHLTAQSKPTKDAKLENL----SNGEAEATPKSYSRSFNTLSGKQAADNRS 564
Query: 598 --------------NNAMNFREDNK-----LALCFEVDDTGCGIDQSKWETVFESFEQGD 638
N + DN ++L V+DTG GI + + VF F Q D
Sbjct: 565 SWEILRHLDEKLLYNPSSKAENDNNPKSESVSLTVCVEDTGIGIPEQAQKRVFTPFMQAD 624
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVV 669
ST+R +GGTG+GLSI + LV MGG + +
Sbjct: 625 SSTSRNYGGTGIGLSISKCLVELMGGRMSFI 655
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
SS R+L G +IL+ +D + + VA L K GA V G +A+ L
Sbjct: 819 SSGLGRLLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAFL---------- 868
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-----NIPIVA 1054
+ P FD MD QMP+MDG+EAT IR+ E + ++PI+A
Sbjct: 869 ----------QIPHD--FDACFMDIQMPEMDGFEATRLIREVEMKAKMEKNVEWHMPILA 916
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+TA ++A +CL GM+ Y++KP + + + +
Sbjct: 917 MTADVIHATLDECLKCGMDGYVSKPFQEKTLYQAVAKF 954
>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
Length = 715
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 174/327 (53%), Gaps = 42/327 (12%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
+++K E + H A+ A+A++ K FLANMSHE+RTPM AIIG+ E++ D LT+
Sbjct: 41 QDLKKAGEELRH--AKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTD-LTDT 97
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + ++++ +LL LLN ILD SK+E+GK+ELE+ F L++ L + + + +
Sbjct: 98 QREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGK 157
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+E + +P + GD R+ QI NL+ N+IKFT+ G ++ LD + E
Sbjct: 158 GIELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFTTQGEVV-------LDVAY---E 207
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
PT NNA N L F V DTG GI K E++F+SFEQ
Sbjct: 208 SPT-----------------NNAAN--------LHFTVTDTGIGIPTDKLESIFDSFEQA 242
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE---SKQIY 694
D STTR+ GGTGLGL+I LV MGG I + G+ + ++E Q
Sbjct: 243 DMSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFTMKFSLAAERPAEAQPL 302
Query: 695 DADFPNTV-VVLATVGSMERMIISQWL 720
+A FP+ V ++ + R+I+++ L
Sbjct: 303 EAVFPDNVRALIVDDNATNRLILNEML 329
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 24/134 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+ LRILLAED+ + Q +A +L+K G V V +G +AV +R
Sbjct: 449 LKALRILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFDR--------------- 493
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
RFDL+LMD QMP+MDG EAT +R E+ + R++PI+ALTAHAM D ++
Sbjct: 494 --------DRFDLVLMDVQMPEMDGLEATAAVRAKEA-NSDRHVPIIALTAHAMKGDREQ 544
Query: 1067 CLGVGMNAYLTKPI 1080
CL GM+ Y++KPI
Sbjct: 545 CLEAGMDGYVSKPI 558
Score = 40.8 bits (94), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
F L++ DC MP DG++ +I++ + +I +V LT+ + D C +G+ A+L
Sbjct: 359 FRLVITDCHMPGEDGFDLAEKIKQ---DGQLSDIQLVMLTSGSEPGDIAHCEQLGVVAHL 415
Query: 1077 TKPIDSERMVSTI 1089
KP+ + I
Sbjct: 416 LKPVKQSELFDAI 428
>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1543
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 156/285 (54%), Gaps = 41/285 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE ++ KS FLANMSHE+RTPM A++G+ +L + L EQ V I+ S A
Sbjct: 873 ARHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLL-LETALNREQQDFVETIRISGDA 931
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+E+G+MELE+ +FDL +EE++D+ + Q + +E + +P
Sbjct: 932 LLSLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGLEIGALIRRKVPI 991
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD R+ QI NLI N+IKFTS G ++++ E L + TA
Sbjct: 992 QLQGDASRLRQILMNLIGNAIKFTSEGEVVVQ--VELLSETATTA--------------- 1034
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ F + DTG GI +F++F Q D S TR++GGTGLG
Sbjct: 1035 ------------------TIKFSITDTGIGITSEDQHKLFQAFSQVDASITRQYGGTGLG 1076
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
L+I R LVN MGGEI V + G+ L S +KQ+Y A
Sbjct: 1077 LAICRQLVNLMGGEIGVTSEIGQGSKFCFDL-----SFTKQLYFA 1116
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 25/142 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+LLAED + Q VA K L+ +G V +G + + L
Sbjct: 1285 IRVLLAEDNLVNQKVALKQLQTLGYIADTVSNGEEVLHLL-------------------- 1324
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP--IVALTAHAMNADEKKC 1067
+T +DLILMDCQMP +DG + T IR H R I+A+TA+AM DE+ C
Sbjct: 1325 ---ETVPYDLILMDCQMPVLDGLQTTRAIRNWPDSHFLRRRQPVIIAMTANAMKEDEQTC 1381
Query: 1068 LGVGMNAYLTKPIDSERMVSTI 1089
L GMN Y++KP+ E++ + +
Sbjct: 1382 LNAGMNGYVSKPVVKEKLANIL 1403
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D+ L+D QMP +DG ++I+ +++ ++P++ LT+ + +K L +G YL
Sbjct: 1177 YDIALVDMQMPTVDGLTLGVQIKANDA---IAHVPLIMLTSTNQRDEVQKALKIGFAGYL 1233
Query: 1077 TKPIDSERMVSTILRL 1092
KP+ R+ TI+ +
Sbjct: 1234 VKPVKPSRLFDTIMNI 1249
>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 172/335 (51%), Gaps = 37/335 (11%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
IS+S + VI + I+ S+ ++ + + +++AEA++ KSQFLA +SHE+
Sbjct: 336 ISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEI 395
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D LT+ Q + AL+ L+N +LD +K+E+GK++LE+
Sbjct: 396 RTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLES 454
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +S+ +P + GDPGR QI +NL+ NSIKF
Sbjct: 455 VPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKF 514
Query: 555 TSSGHIIIRGWCENLDTSKNTAEFP---------------------------------TD 581
T GHI ++ +L N A P D
Sbjct: 515 TERGHIFVQ---VHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAAD 571
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ F+ L + N +K+ L V+DTG GI VF F Q D ST
Sbjct: 572 SRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSST 631
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 632 SRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGS 666
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 48/179 (26%)
Query: 940 SSNQKR--------ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
SSN++R +L G IL+ +D + VA L+K GA V V G A+ +L
Sbjct: 832 SSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASL-- 889
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR------------ 1039
+ P +F L LMD QMP+MDG+EAT +IR
Sbjct: 890 ------------------QVPH--KFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVA 929
Query: 1040 --KSESEHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
SE++ R ++P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 930 CDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKF 988
>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 997
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 172/335 (51%), Gaps = 37/335 (11%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
IS+S + VI + I+ S+ ++ + + +++AEA++ KSQFLA +SHE+
Sbjct: 338 ISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEI 397
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D LT+ Q + AL+ L+N +LD +K+E+GK++LE+
Sbjct: 398 RTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLES 456
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +S+ +P + GDPGR QI +NL+ NSIKF
Sbjct: 457 VPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKF 516
Query: 555 TSSGHIIIRGWCENLDTSKNTAEFP---------------------------------TD 581
T GHI ++ +L N A P D
Sbjct: 517 TERGHIFVQ---VHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAAD 573
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ F+ L + N +K+ L V+DTG GI VF F Q D ST
Sbjct: 574 SRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSST 633
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 634 SRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGS 668
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 48/179 (26%)
Query: 940 SSNQKR--------ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
SSN++R +L G IL+ +D + VA L+K GA V V G A+ +L
Sbjct: 834 SSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASL-- 891
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR------------ 1039
+ P +F L LMD QMP+MDG+EAT +IR
Sbjct: 892 ------------------QVPH--KFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVA 931
Query: 1040 --KSESEHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
SE++ R ++P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 932 CDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKF 990
>gi|410669241|ref|YP_006921612.1| PAS domain protein [Methanolobus psychrophilus R15]
gi|409168369|gb|AFV22244.1| PAS domain protein [Methanolobus psychrophilus R15]
Length = 1200
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 41/305 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL- 448
+I+ N +++ K EL L+A+ AEA+N KS+FLA MSHE+RTPM AIIG ++L
Sbjct: 789 IIVNNDITELKKKEWEL---LEAKESAEAANIAKSEFLATMSHEIRTPMNAIIGFTDLLL 845
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
+++ Y+ + Q +S LL L+ +LDLSK+++GK+ELE +FDLQ LE LV
Sbjct: 846 ETEINDVQRHYAEIVQ--RSGGILLNLIEDVLDLSKIDAGKLELEKLDFDLQVLLEGLVK 903
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
S++ + +E ++ +++P ++GDPGR+ QI +NL N+IKFT G + I
Sbjct: 904 TMSLRAHSKGLELSCNIEEDVPLLLQGDPGRLTQILTNLTGNAIKFTMEGEVTI------ 957
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ ++ + E + + L F V DTG GI + K +
Sbjct: 958 -----------------------------HVSIEYLEVDTVMLRFAVTDTGIGIPEEKID 988
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
+FE F Q D S TR+ GG+GLGL+I + L MGGEI V + G+ + L S
Sbjct: 989 LIFEKFTQADASNTRRFGGSGLGLAISKQLAEMMGGEIGVTSEVGKGSEFWFTVRLDKQS 1048
Query: 689 ESKQI 693
++ I
Sbjct: 1049 QTGWI 1053
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 23/131 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILL ED Q VA ++L + G V+ V +G++A++AL M
Sbjct: 1069 LNILLVEDDIYSQKVAQEMLMRDGFNVNAVNNGIEAIKALEIM----------------- 1111
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MD QMP+MDG EAT IR +S+ +NIPI+ALTAHAM D + +
Sbjct: 1112 ------PYDLVFMDVQMPEMDGLEATKHIRSPDSKVLNKNIPIIALTAHAMQGDRELFIE 1165
Query: 1070 VGMNAYLTKPI 1080
GM+ Y++KPI
Sbjct: 1166 AGMDDYMSKPI 1176
>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
Length = 641
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 163/295 (55%), Gaps = 44/295 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAE +N KS+FLA MSHE+RTPM IIG+ +L D +L +Q V I SS +
Sbjct: 233 ARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLL-GDTKLDEQQKDFVSIINSSSNS 291
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ +++ ILD SK+E+GK+ELE T ++L L E+ + +V+ ++ V D+ +P
Sbjct: 292 LMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQLVCDIDPQLPL 351
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+GD GR+ Q+ SNL++N++KFT GH+
Sbjct: 352 EVKGDMGRLKQVLSNLLSNAVKFTERGHV------------------------------- 380
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ ++ R+ + ++ F V D+G GI + +TVFE F+Q D STTRK+GGTGLG
Sbjct: 381 ----KLMVSLVSRKTDIASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLG 436
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL------GASSESKQIYDADFPN 700
L+I +LV MGGEI++ + G+ + + L S ++ ++ DFPN
Sbjct: 437 LAICNSLVEVMGGEIRLTSEPGLGSYFEFTIPLNIVCDKSISPQTPNVF--DFPN 489
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 31/156 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ EDT + Q V +LEK+G V+V G A+
Sbjct: 511 ILVVEDTAVNQKVVRMMLEKLGMQVNVAEHGKDALRQCQ--------------------- 549
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
T +FDLILMDCQMP MDG+ AT IRK E G + +PI+AL+A+ + +++C G
Sbjct: 550 --THQFDLILMDCQMPVMDGFIATENIRKM-GEWG-QQVPIIALSANVIKEAQQRCFDAG 605
Query: 1072 MNAYLTKPIDSERMVSTILRL------TKNMPSEAT 1101
MN ++ KP+ ER+ R T++ P +AT
Sbjct: 606 MNEFVAKPVTKERLQQIFERYLPESLQTRSNPKQAT 641
>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 962
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 160/286 (55%), Gaps = 34/286 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 281 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS-PLPRQQRDHLSTIRKSSEI 339
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L+ F L+ +EE++ M + + N++ V + +++P
Sbjct: 340 LLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDVPD 399
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP RV Q+ +NL+NN+IKFT +G +++R E D
Sbjct: 400 NIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEED--------------------- 438
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+E N++ L + D+G G+ +++ +++F +F Q D ST R++GGTGLG
Sbjct: 439 ------------KESNRITLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLG 486
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD 697
L+I + LV +MGG+I + + G+ L SS + I D
Sbjct: 487 LAISKRLVEEMGGKIGLESELGKGSTFWFTLTSELSSTGEAIAPKD 532
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+ MD QMP MDG E T +R + + PI+ALTAHA+ ++ + + G + YL
Sbjct: 730 FDLVFMDLQMPGMDGVETTERLRSLDG--ASHRTPIIALTAHALAEEQDRLIQQGFDGYL 787
Query: 1077 TKPIDSERMVSTI 1089
KPI + +++ I
Sbjct: 788 AKPISNSQLIDII 800
>gi|372488890|ref|YP_005028455.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
gi|359355443|gb|AEV26614.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
Length = 490
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 146/266 (54%), Gaps = 36/266 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DA AE ++ KS+F+ANMSHELRTPM ++G+ ++L+ + L EQ V I S
Sbjct: 248 DALASAEQASRAKSEFVANMSHELRTPMNGVLGMAQVLR-ETPLDEEQREYVEVINSSGE 306
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILDLSK+E+G+++LE+ +FDL ++L +++++F+ Q + +E L + ++P
Sbjct: 307 SLLAIINDILDLSKIEAGRLDLESRDFDLGQQLAQVMELFAPQVRSKRLEMHLHVEPDVP 366
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+RGDPGR+ QI NL+ N++KFT+ G I + W E
Sbjct: 367 LKLRGDPGRLRQILVNLVANAVKFTARGEITLSVWREG---------------------- 404
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ N + L F V DTG GI K +F F Q D S RK GGTGL
Sbjct: 405 ----ESGGNVI---------LRFAVSDTGIGIPAEKIPQLFAPFTQVDGSIARKFGGTGL 451
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GLSI + LV MGG I + + G
Sbjct: 452 GLSISKHLVEMMGGCIGINSQAGQGA 477
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 174/316 (55%), Gaps = 25/316 (7%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+ + + +IG + + + VS +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 329 LQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQAEAADVAKSQFLATVSHEI 388
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM I+G+L++L D +L++ Q + AL+ L+N +LD +K+E+GK+ELE
Sbjct: 389 RTPMNGILGMLQLLL-DTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLELEA 447
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +SD +P V GDPGR Q+ NL+ NS+KF
Sbjct: 448 VPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNSVKF 507
Query: 555 TSSGHIIIR-GWCENLDTSKNT-------AEFPTDRKKFGRAFRT-KLKQQANNAMNF-- 603
T GHI ++ E +K+ + T K +F T KQ A+N +
Sbjct: 508 TEEGHIFVQVHLAEQRKPTKDAKIETYSNGDSETTPKSQSWSFNTLSGKQVADNCSSLDE 567
Query: 604 -------REDNKLA------LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
R++N A L V+DTG GI + + VF F Q D ST+R +GGTG+
Sbjct: 568 EFLYDPTRDENNNAKSESVRLTVSVEDTGIGIPEQAQKRVFTPFMQADSSTSRNYGGTGI 627
Query: 651 GLSIVRTLVNKMGGEI 666
GLSI + LV MGG++
Sbjct: 628 GLSISKCLVELMGGQM 643
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 37/187 (19%)
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
H+I +S P + + + + K +L G +IL+ +D + + VA L K GA V V G
Sbjct: 820 HKIQNS---SPRNGAIAKAKAKGLLRGKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSG 876
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
+A+ L + P FD MD QMP+MDG+EAT IR+ E
Sbjct: 877 HEALACL--------------------QIPHD--FDACFMDIQMPQMDGFEATRLIREME 914
Query: 1043 SEHGA------------RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
S+ R++PI+A+TA ++A +CL GM+ Y+ KP + + +
Sbjct: 915 SKAKMGNNNKSDGIGEWRHMPILAMTADVIHATLDECLKCGMDGYVPKPFKEKSLYQAVA 974
Query: 1091 RLTKNMP 1097
+ + P
Sbjct: 975 KFFDSNP 981
>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1426
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 42/342 (12%)
Query: 396 VSKEMKLRAEL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E K R+EL I+ A+R+AEA+N KS+F+A MSHE+RTPM +IG+ IL D
Sbjct: 750 LEQERKQRSELALKNIALEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGIL-LD 808
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
L+ Q V I+ S ALL ++N ILD SK+ESGK+ELE F+L++ +E +D+ +
Sbjct: 809 TPLSELQRDCVETIRNSGDALLMIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLA 868
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ + +E N P + GD R+ QI NLI N IKFT G +++
Sbjct: 869 PKAAEKGLELAYIFDPNTPETILGDVTRLRQILVNLIGNGIKFTEKGEVVV--------- 919
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
N + +P ++ + + F V DTG GI + + +F
Sbjct: 920 --NVSSYPQEKSSTAPTY--------------------TIEFAVTDTGIGIAPERKDKLF 957
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
++F Q D STTR++GGTGLGL I + L MGGEI V + G+ + + A S
Sbjct: 958 KAFSQVDSSTTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKGSTFKFTITAEAFHSST 1017
Query: 692 QIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW 733
++ ++ + + +I+ +K+ L+T W
Sbjct: 1018 LAWEK------YIITHLANKRVLIVDDNQTNRKILILQTQSW 1053
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 25/132 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+ ED + Q V +IL+++ +V +GL+ ++AL LQ
Sbjct: 1180 LRILIGEDNAVNQKVIQQILQRMSYRADLVANGLEVIQALK-------------LQS--- 1223
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QMP+MDG E T I +++ H I+A+TA+AM D++ CL
Sbjct: 1224 -------YDVVLMDIQMPEMDGLETTRWI--TQTYHQGSRPRIIAMTANAMQGDQEHCLA 1274
Query: 1070 VGMNAYLTKPID 1081
GM+ YL+KPI+
Sbjct: 1275 AGMDDYLSKPIN 1286
>gi|395226150|ref|ZP_10404647.1| PAS domain S-box [Thiovulum sp. ES]
gi|394445654|gb|EJF06541.1| PAS domain S-box [Thiovulum sp. ES]
Length = 1429
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 175/325 (53%), Gaps = 42/325 (12%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
V++E L++E+I A+ AE N KS FLANMSHE+RTP+ IIGL E++ D +LT
Sbjct: 709 VTEEKILQSEIII---AKESAEKGNRAKSVFLANMSHEIRTPLNGIIGLTELV-LDTELT 764
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
NEQ + + K SS ALL ++N ILD SK+E+GK+++ +F+L + LE + ++FS+ +
Sbjct: 765 NEQREYLQKAKLSSNALLNVINDILDYSKIEAGKLDIVKQKFELDELLENITNLFSLLAN 824
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
N +E + + + ++ GD R+ QI +NLI N+IKFT G + + S N
Sbjct: 825 NKGLEFLFFIEKDFHFDLIGDSLRITQILTNLIGNAIKFTEKGLVSL---------SVNI 875
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
E D K+ L F+++D+G GI + + +F+SFE
Sbjct: 876 LE---------------------------RDEKMTLLFQIEDSGIGISEENQKKLFQSFE 908
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
QGD S T+K+GGTGLGL I + L+ MGG+I V GT + ++ K+I
Sbjct: 909 QGDQSNTKKYGGTGLGLMISKQLLKLMGGDIWVESNLGIGT--KFIFIIELDYAEKEIQK 966
Query: 696 ADFPNTVVVLATVGSMERMIISQWL 720
D + ++ ER +S L
Sbjct: 967 LDLNDKKFLVVINNERERNYLSDIL 991
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 28/151 (18%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
S N ++ R+L+AED QIVA I + +G + +G +AV+ L+ E
Sbjct: 1098 SKNDLSVIGDKRVLIAEDNETNQIVASNIFKNMGFHFKIANNGEEAVK-----LSKE--- 1149
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1059
FD+I MD QMPK+DG EA+ EIR + IPI+AL+A
Sbjct: 1150 ---------------EHFDIIFMDIQMPKLDGLEASREIR-----NLGITIPIIALSAAV 1189
Query: 1060 MNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
M +D + L GMN +L KPID + + TIL
Sbjct: 1190 MKSDVELSLSAGMNGHLVKPIDKKALFDTIL 1220
>gi|436841215|ref|YP_007325593.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432170121|emb|CCO23492.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 781
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 149/260 (57%), Gaps = 32/260 (12%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KSQFLA MSHE+RTPM AI+G+ EIL ++ +L +EQ V +++S ALL L+N ILDL
Sbjct: 267 KSQFLAAMSHEIRTPMNAILGMAEIL-ANSELDSEQKRFVGILQESGEALLHLINEILDL 325
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESG++ ENT+ DL + + + + + +E +++ ++P + GDP R+ Q
Sbjct: 326 SKIESGEISFENTDLDLDRIIGKAFKVTAHAGHGKGLELAYNINRDVPVLMMGDPSRLQQ 385
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
IF NLI N+IKFT G +++ T LK
Sbjct: 386 IFVNLIGNAIKFTERGFVVV---------------------------ETSLKHDT----E 414
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
F N++ + F + D+G GI++ K + +F+ F Q D STTRK+GGTGLGLSI ++L M
Sbjct: 415 FGLGNRMNIHFAIRDSGIGIEEDKVDAIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAM 474
Query: 663 GGEIKVVKKNSPGTLMQLYL 682
GG+I + K GT + L +
Sbjct: 475 GGKIWIESKKGFGTTVNLQI 494
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+I MD +MP MDGYE T IR E+ IVALTAHA+ ++K G +++L
Sbjct: 700 FDMIFMDIEMPIMDGYECTRTIRTWENNTDITPCIIVALTAHALTEAKEKITDAGCDSFL 759
Query: 1077 TKPIDSERMVSTILRLTKNMPS 1098
TKPI +++V+TI L K M S
Sbjct: 760 TKPISKDKIVNTINELCKPMMS 781
>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1269
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 155/281 (55%), Gaps = 38/281 (13%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYA 471
R +AE + KS+FLA MSHE+RTPM AIIG + LK+D LT++Q + +I S+
Sbjct: 512 RTQAEFATLAKSEFLAKMSHEIRTPMNAIIGFAGLALKTD--LTSKQRDYLSKIDSSAKT 569
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK++LE+ +F L + + + +M SV+ S ++E + + N+P
Sbjct: 570 LLGIINDILDFSKIEAGKLDLESIDFQLDEVINGIANMVSVKASEKDLELISQIGSNVPA 629
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ NL+NN++KFT GHI+I+ EN+ S TD
Sbjct: 630 ALIGDPLRLGQVLVNLVNNAVKFTEHGHILIK--VENVKNSY------TD---------- 671
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L F V DTG G+ + +F +F Q D S TRK GGTGLG
Sbjct: 672 -----------------CVLKFSVTDTGIGMTPDQMTRLFAAFSQADTSVTRKFGGTGLG 714
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
L+I + LV MGG+I V + G+ + G +S K+
Sbjct: 715 LTISKHLVEMMGGQISVESELGRGSTFSFSIEFGRASREKR 755
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 26/149 (17%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
++EG ++LL ED L Q VA +IL G V + +G +AVEA+
Sbjct: 915 LIEGAKVLLVEDNALNQQVANEILAGAGLFVEIANNGKEAVEAV---------------- 958
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
+T +DL+LMD QMP M GYEAT IRK+ +++PIVA+TAHAM ++
Sbjct: 959 -------ETSEYDLVLMDVQMPVMGGYEATAVIRKNPR---FKDLPIVAMTAHAMRGAKE 1008
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+CL GMN Y++KPID ++ S ++R K
Sbjct: 1009 ECLNAGMNDYVSKPIDPAQLFSVLVRWIK 1037
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+EGL++L+ +D P + V + L+ + V P A+ L R
Sbjct: 764 VEGLKVLVVDDNPTAREVLVEQLDSLKFRVMSAPSARAAISELKR--------------- 808
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
S D P +DL++MD +MP+MDG EA+ IR A + I+ +TA +
Sbjct: 809 --SSAQDAP-YDLVVMDWKMPEMDGIEASRVIRNDADLQHAPS--IIMVTAFGREDVMTR 863
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
VG+N +L KP+ M TI+++ + PS T
Sbjct: 864 AEEVGINGFLMKPVTPSLMFDTIMQVFGHEPSTGT 898
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL-TAHAMNADE 1064
G+ E + + DLIL+D MP MDGYE R+ +++ R+IP++ + T H M DE
Sbjct: 39 GTALEVVRSRKPDLILLDTTMPDMDGYEIC---RRLKADETTRDIPVLFVYTMHEM-GDE 94
Query: 1065 KKCLGVGMNAYLTKPID 1081
+ L +G Y+ KP++
Sbjct: 95 TRGLELGAADYIAKPVN 111
>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1559
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 148/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE ++ KS FLANMSHE+RTPM A++G+ ++ + L +EQ + I+ S A
Sbjct: 885 ARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLM-LETPLNSEQQDFIETIRISGDA 943
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+E+G+M LE +FDL LEE++++ + N +E + N+P
Sbjct: 944 LLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPT 1003
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD GR+ QI NLI+N+IKFTS+G +++R +L ++ T
Sbjct: 1004 QLQGDAGRLRQILMNLISNAIKFTSNGEVVVRAELRSLSSTTAT---------------- 1047
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ F + DTG GI +F F Q D S TRK+GGTGLG
Sbjct: 1048 -------------------IYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGLG 1088
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV+ MGGEI V + G+
Sbjct: 1089 LAICKQLVSLMGGEIGVESRLGKGS 1113
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 25/149 (16%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
R LRILLAED + Q VA K L+ +G + V +G + ++ L ++
Sbjct: 1298 RDFHKLRILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVLQLLEKI------------ 1345
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEI-RKSESEHGARNIPIV-ALTAHAMNA 1062
+DLILMDCQMP +DG E T EI R ES + P+V A+TA+AM
Sbjct: 1346 -----------PYDLILMDCQMPVLDGLETTKEIHRWQESSFVSSRRPVVIAMTANAMKE 1394
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
D++ CL GM+ YL+KP+ E++ + + R
Sbjct: 1395 DQQMCLDAGMDDYLSKPVIKEKLAAALQR 1423
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D+ ++D MP++DG +I+ + + G +P++ LT+ + ++ L +G AYL
Sbjct: 1189 YDIAVIDMHMPEVDGMTLGEQIKANSAIAG---LPLIMLTSTNQRDEIQRALKIGFAAYL 1245
Query: 1077 TKPIDSERMVSTILRLTKNMPSEAT 1101
KP+ R++ TI+ + E T
Sbjct: 1246 VKPVKPSRLLDTIMTILGTQIKEET 1270
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 58/417 (13%)
Query: 312 YGSKVPPGHVIHVQNAKLGH--KQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYK 369
YGS P +H+ + G +++ M F + LP +
Sbjct: 508 YGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLP--------------------WS 547
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
+II + ++ +L++G I L + E R + + +AEA++ KSQFLA
Sbjct: 548 AIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRV----MRELKGQAEAADIAKSQFLAT 603
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM ++G+L++L D +L Q V ++S L+ L+N +LDL+K+ESG+
Sbjct: 604 VSHEIRTPMNGVLGMLQMLM-DTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGR 662
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLIN 549
+ELE FD++ L+ ++ +F + +E + +SD +P + GDP R QI +NL+
Sbjct: 663 IELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVG 722
Query: 550 NSIKFTSSGHIIIR------------GWCENLDTSKNTAEFPTDRKK-------FGRAFR 590
NS+KFT GHI ++ +C D S + E D G
Sbjct: 723 NSMKFTEQGHIFVQVHLVKELNRKGNNFC---DVSAHNREILYDSDNSMLWNTLSGLEVA 779
Query: 591 TKLKQQANNAMNFR----EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ N M F+ E + + L V+DTG GI + +F F Q D ST+R +G
Sbjct: 780 DSWRSLENFTM-FKNSNGETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYG 838
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL----GASSESKQIYDADFP 699
GTG+GLSI + LV MGGEI K+ G+ + G + K+ Y P
Sbjct: 839 GTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTP 895
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 43/206 (20%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R I R+ +G +R+ S + S + +L G +IL+ +D + + VA L+
Sbjct: 1022 RLSTIVACLRKTLGVGVTRQ----QSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSLK 1077
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K G+ V+ V G A++ L P T FD MD QMP+MD
Sbjct: 1078 KYGSKVTCVDSGSDAIDMLK-----------------PPHT-----FDACFMDVQMPEMD 1115
Query: 1031 GYEATIEIRKSE---------SEHGARN--------IPIVALTAHAMNADEKKCLGVGMN 1073
G+EAT IR E E A N +PI+A+TA + A +KC+ GM+
Sbjct: 1116 GFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMD 1175
Query: 1074 AYLTKPIDSERMVSTILRLTKNMPSE 1099
Y++KP + +++ + + +E
Sbjct: 1176 GYVSKPFEEQQLYFAVAHFLETDETE 1201
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 38/294 (12%)
Query: 395 GVSKEMKLRAELI-SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+S+++ R + L+A + A+ ++N KS+FLA MSHE+RTPM ++G++++L D +
Sbjct: 288 GISRDITDRKRYEGAMLNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLLL-DTR 346
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT++Q + K S+ +LL ++N ILD S+VE+G+ME+E+ +F+L +++E + +++
Sbjct: 347 LTSDQTHKLKVAKNSASSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIR 406
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+E ++D+SD + V GD R+ Q+ +NLI+N+IKFT G I++R
Sbjct: 407 SDAKGIELIVDVSDIQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVRA--------- 457
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
K + T+L+ C V+DTG GI SK E +FES
Sbjct: 458 ---------KTINQGDTTRLE-----------------C-SVEDTGIGIPDSKLEHLFES 490
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
F Q D STTR +GG+GLGL+I L+ MGG I+V + GT+ + L S
Sbjct: 491 FMQVDTSTTRVYGGSGLGLAICERLIELMGGRIQVSSSINKGTIFSFDINLKTS 544
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 19/131 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + Q+VA +L+K G V DG A++ L + SE
Sbjct: 708 KVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQ-----------------SE 750
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D P + LILMDCQMP +DGY+AT +IR+ ++ +NIPI+A+TA+AM D +KCL
Sbjct: 751 L-DQP-YTLILMDCQMPVLDGYKATAKIRQGDAGERYKNIPIIAMTANAMKGDREKCLQS 808
Query: 1071 GMNAYLTKPID 1081
GMN Y+ KPID
Sbjct: 809 GMNDYVPKPID 819
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 174/329 (52%), Gaps = 32/329 (9%)
Query: 378 SVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTP 437
S+ ILVI + I VS+ K+ + + +++AEA++ KSQFLA +SHE+RTP
Sbjct: 403 SIGILVIALLVGHIFHATVSRIAKVEDDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTP 462
Query: 438 MAAIIGLLEILKSDD-QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496
M ++G++ +L D +T ++Y Q S AL+ ++N +LD +K+ESGK+ELE
Sbjct: 463 MNGVLGMMNMLMDTDLDVTQQEYVRTAQ--GSGKALVSIINEVLDQAKIESGKIELEAVL 520
Query: 497 FDLQKELEELVDMFSVQCSNHNVETV-------------LDLSDNIPRNVRGDPGRVFQI 543
FD++ +++++ +FS + VE + + +SD +P+ + GDPGR QI
Sbjct: 521 FDIRSIMDDVLSLFSEKSQGKGVEALRVWFYSFLGAKLAVYVSDQVPQQLIGDPGRFRQI 580
Query: 544 FSNLINNSIKFTSSGHIIIRGW----------CENLDTSKNTAE----FPT-DRKKFGRA 588
+NL+ NSIKFT GHI + E TSK+ FP D ++
Sbjct: 581 ITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDAEHTLSGFPVADGRRSWEG 640
Query: 589 FRTKLKQQANNAMNFREDNKL-ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
FR + + + N L +L V+DTG GI +F F Q PS +RKHGG
Sbjct: 641 FRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGG 700
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TG+GLSI + LV M GEI V + G+
Sbjct: 701 TGIGLSISKCLVGLMNGEIGFVSEPKIGS 729
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 26/175 (14%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
+G + P + + + K +L G +IL+ +D + + VA L+K GA V V G++
Sbjct: 894 MGVGNKGNPRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIE 953
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ L P +FD MD QMP+MDG+EAT IR+ E+
Sbjct: 954 AITMLR-----------------PPH-----QFDACFMDIQMPEMDGFEATRRIREIENS 991
Query: 1045 HGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
R ++PI+A+TA M A ++C GM+ Y++KP ++E++ + + ++
Sbjct: 992 VKDRELFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYREVSKFFQS 1046
>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
Length = 758
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 148/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA++ KS FLANMSHE+RTPM ++G+ +L + L EQ+ + +S +
Sbjct: 219 AKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLAT-PLNPEQHDLAETLCQSGES 277
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+G+MELE +FDL LE +D+ + + ++E V+++ +PR
Sbjct: 278 LLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPR 337
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+VRGDPGR+ QI NL+ N+IKFT G ++++ ++ +P
Sbjct: 338 HVRGDPGRLRQILLNLVGNAIKFTEKGEVVVKVTVDH--------NWP------------ 377
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
N++ L F V DTG GI + E +F+ F Q D STTR+ GG+GLG
Sbjct: 378 ---------------NRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGSGLG 422
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L I + L M G I V K + G+
Sbjct: 423 LVICKRLAELMSGSIGVESKPNEGS 447
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 31/157 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED P+ Q V L +G VVP+G + +EAL RR++
Sbjct: 624 RILIAEDNPVNQKVTLLQLRNLGYPADVVPNGREVLEAL---------RRKA-------- 666
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP----IVALTAHAMNADEKK 1066
+ L+LMD QMP+MDG EAT +IR++++ G R IP I+A+TA+AM D +
Sbjct: 667 ------YALVLMDAQMPEMDGVEATRKIREAQAA-GDRTIPSPLRIIAMTANAMTGDREL 719
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
CL GM+ YL KP+ + + R +P EAT T
Sbjct: 720 CLAAGMDDYLAKPVKPGDLRDMLARY---LPDEATAT 753
>gi|387813408|ref|YP_005428890.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381338420|emb|CCG94467.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 984
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 154/265 (58%), Gaps = 34/265 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 309 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS-PLPRQQRDHLNTIRKSSEI 367
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L+ F L+ +EE++ M + N++ V + +++P
Sbjct: 368 LLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPD 427
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP RV Q+ +NL+NN+IKFT +G +++R E+ DT
Sbjct: 428 NIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDT-------------------- 467
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
E N++ L + D+G G+ +++ +++F +F Q D ST R++GGTGLG
Sbjct: 468 -------------EHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLG 514
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV +MGG+I + + G+
Sbjct: 515 LAISKRLVEEMGGKIGLESELGKGS 539
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+ MD QMP MDG E T IR +S G+ + PI+ALTAHA+ ++++ G + Y+
Sbjct: 755 FDLVFMDLQMPGMDGVETTARIRDLDS--GSHHTPIIALTAHALADEQERLAQQGFDGYM 812
Query: 1077 TKPIDSERMVSTILRLT 1093
KPI S ++V I T
Sbjct: 813 PKPISSSQLVELIREYT 829
>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 795
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 40/309 (12%)
Query: 397 SKEMKLRAELI--SHLDAR---RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+KE++ +A+L S +AR R+A+A+N KS FLANMSHE+RTPM I+G+L +L+
Sbjct: 250 NKELEQQAKLANDSAAEARELARQAKAANETKSSFLANMSHEIRTPMNGILGMLNLLEDM 309
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D + Q + + S+ +LL ++N ILD SK+E+ +++E TEFDL+ + D+ S
Sbjct: 310 DNPAD-QADLILTAQDSAKSLLEIVNEILDFSKIEANAIDIEKTEFDLRDSIYGATDLVS 368
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ + +E V ++ ++PR + GDP R+ Q+ NL+ NS+KFT G +++
Sbjct: 369 LTAHDKGLELVAQIASDVPRYLIGDPLRIRQLCINLLGNSLKFTKEGTVMLA-------- 420
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+K QQ NA R FE+ DTG GI K +T+F
Sbjct: 421 ------------------VSKAAQQPRNATRLR--------FEISDTGMGIPPEKVDTLF 454
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
+ F Q D STTR GGTGLGLSI + L M GEI V G++ + + S
Sbjct: 455 DPFSQVDSSTTRNFGGTGLGLSICKKLAELMSGEIGVTSVVGEGSVFWFEIEVEEDSSKS 514
Query: 692 QIYDADFPN 700
+I + + N
Sbjct: 515 KIEKSHYSN 523
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 25/131 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+AED + Q V +L + G +V DG EAL+R+ E
Sbjct: 672 RVLVAEDNKVNQKVIRMMLGRAGFDCELVNDG---KEALDRLRDEE-------------- 714
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FDL+ MDCQMP ++G+EAT EIRKS +PI+ALTA+A+ E++CL
Sbjct: 715 ------FDLVFMDCQMPILNGFEATEEIRKSSGSQSG--VPIIALTANALKGYEEQCLQA 766
Query: 1071 GMNAYLTKPID 1081
GMN ++TKPID
Sbjct: 767 GMNDFMTKPID 777
>gi|445497360|ref|ZP_21464215.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
gi|444787355|gb|ELX08903.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
Length = 1649
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 147/264 (55%), Gaps = 34/264 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AEA+ KS FLAN+SHE+RTPM AI+G + D L + +I ++ +
Sbjct: 979 ARANAEAATRAKSDFLANISHEIRTPMNAILGFAGLGTHLD-LPPQPLDYFRKIGRAGQS 1037
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N +LD SK+ESGK+ELE FDL L +L D+FS + + +E V+ + ++P
Sbjct: 1038 LLEIINDVLDFSKIESGKLELEALPFDLPDTLSQLADLFSWRAAERGLELVIWAAPDVPS 1097
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GD R+ QI NL+ N++KFT+ GHI
Sbjct: 1098 NLLGDSLRLSQILVNLVGNALKFTARGHI------------------------------- 1126
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+L+ + + D +AL F V+D+G GI + + +F++F Q D STTR +GGTGLG
Sbjct: 1127 ELRVERDLHAPVPGDGYIALRFVVEDSGLGISEEQQARLFQAFAQADASTTRLYGGTGLG 1186
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L+I + LV KMGG I+V + PG
Sbjct: 1187 LAISQQLVRKMGGVIRV--DSEPG 1208
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 26/152 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G +L+ +D + Q VA +IL++ G V + G +A RM AA
Sbjct: 1379 IRGAHVLVVDDNSINQQVASEILQRAGVRVDLAGSGEEAA----RMSAAG---------- 1424
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
R+D +LMD QMP MDGY+AT IR + + +PI+A+TAHA+ ++
Sbjct: 1425 ---------RYDAVLMDIQMPDMDGYQATALIRAAPD---SARLPIIAMTAHAVAGYRER 1472
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
CL + MN Y+TKPID + + + + + P
Sbjct: 1473 CLAMDMNDYVTKPIDPDTLYAVLATWVEPAPG 1504
>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
gi|392304678|emb|CCI71041.1| histidine kinase [Paenibacillus polymyxa M1]
Length = 556
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 149/268 (55%), Gaps = 36/268 (13%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
++FLA MSHE+RTPM +IG++++L + +L N+Q I++S+ AL+ ++N ILD +
Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLL-METELQNDQQEYADIIRRSADALVAVINDILDFT 228
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K+ESGKME+E FDL ++E+ +F+V+ + N+E V L + P + GD GR+ Q+
Sbjct: 229 KLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQTPPVLYGDMGRLRQV 288
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
NL++N++KFT G + + +
Sbjct: 289 LINLVSNAVKFTDQGGVYVFASVKE----------------------------------- 313
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
R DN L + F V DTG GID +K +F F Q D S TRK+GGTGLGL+I +TLV+ MG
Sbjct: 314 RSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFSQLDSSMTRKYGGTGLGLAICKTLVDMMG 373
Query: 664 GEIKVVKKNSPGTLMQLYLLLGASSESK 691
G+I+V G + LG + E++
Sbjct: 374 GDIRVDTSGEQGVAFHFTMKLGVAKENE 401
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ +D P+ Q + IL+K+G V DG QA++ M+ A
Sbjct: 423 VLVVDDHPINQKLMVNILDKLGLASDVAADGQQALD----MVTANQD------------- 465
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+D I MD QMP MDG E T +R E G I+A+TA+ M + +C+ G
Sbjct: 466 -----YDYIFMDLQMPVMDGLECTGRVR--EQLAGRSQPAIIAMTANVMEGIQPRCIEAG 518
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
MN Y++KP+ + +LR
Sbjct: 519 MNDYISKPVKISSVKQALLR 538
>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 852
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 165/326 (50%), Gaps = 44/326 (13%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+L+L +S + LIS A+ AE++N + FLANMSHE+RTPM IIG+ E L
Sbjct: 167 VLVLQRDISDVKAAESALIS---AKEVAESANKARGAFLANMSHEIRTPMNGIIGMTE-L 222
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
D QL EQ + +K S+ ALL ++N ILD SK+E+GKME E+ F +Q + E V
Sbjct: 223 ALDTQLDAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAVR 282
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+ +V +E V D+ +P + GDP R+ Q+ NLI N+IKFT G +
Sbjct: 283 VLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTERGEV-------- 334
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
A + ++ Q ++ R F + DTG G+ K +
Sbjct: 335 -------------------ALKVEVDQSTERSVYLR--------FSIRDTGIGVPADKQQ 367
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA-S 687
+FE+F Q D STTR+ GGTGLGL+I LV M G+I + G++ G
Sbjct: 368 AIFEAFSQADVSTTRRFGGTGLGLAISARLVQLMDGKIWLESTPGQGSVFSFTGRFGVQE 427
Query: 688 SESKQIYDADFPNTVVVL----ATVG 709
+ S + ++A F V++ ATVG
Sbjct: 428 ATSVRPFEARFGGRRVLVIEDNATVG 453
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 29/157 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL ILL ED P+ Q +A ++LE+ VS+ +G +AV+
Sbjct: 589 GLNILLVEDNPVNQELATRLLERQSHRVSLANNGAEAVDLF------------------- 629
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE------HGARNIPIVALTAHAMNA 1062
D+ FD+ILMD QMP M G EAT IR E H + + I+A+TA+ M
Sbjct: 630 ----DSGHFDVILMDMQMPVMGGIEATEAIRSREMRRSWVVSHELKPVYIIAMTANVMAT 685
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
D +CL GMN Y+ KP+ SE + + + R + ++
Sbjct: 686 DRDRCLEAGMNDYVAKPLRSEELYAALERARGGLATD 722
>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1478
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 148/263 (56%), Gaps = 34/263 (12%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
K+QFLANMSHE+RTPM ++G+ E+L + D L Q V ++ S LL ++N ILD
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTD-LNPRQLDFVKTLQVSGEHLLGVINDILDF 587
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G+M L+ E ++ + LE+++D+ S Q ++E L + ++PR + GD GR+ Q
Sbjct: 588 SKLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQ 647
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I +NL++NSIKFT SG ++I R + Q+
Sbjct: 648 ICTNLVSNSIKFTESGEVVI---------------------------RVSVHQE------ 674
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
E +KL L F V DTG GI+ +F++F Q D STTRK+GGTGLGL+I + LV M
Sbjct: 675 LEEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEMM 734
Query: 663 GGEIKVVKKNSPGTLMQLYLLLG 685
GGEI V + G+ + G
Sbjct: 735 GGEIGVESQLGVGSTFWFTITFG 757
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 25/131 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILL EDTP+ + ++ +G +G +A++ + +
Sbjct: 935 LKILLVEDTPINLKLVRHQVQLLGHESESAENGQEALDKIAK------------------ 976
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMDCQMP MDGY+A +R E E R+ ++ +TA+AM D +KCL
Sbjct: 977 -----NDYDIVLMDCQMPVMDGYQAVRTLR--EREGTDRHTIVIGMTAYAMQGDREKCLA 1029
Query: 1070 VGMNAYLTKPI 1080
GM+ YL+KP+
Sbjct: 1030 AGMDDYLSKPV 1040
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 25/133 (18%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ L +LL EDTP+ + + +G +G +A+E L AE+
Sbjct: 1222 QSLTLLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALEKL-----AEND--------- 1267
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
+D++LMDCQMP MDGY+AT +R+ E + + ++ +TA+AM D KC
Sbjct: 1268 ---------YDIVLMDCQMPVMDGYKATQTLRQREGTN--HHTIVIGMTAYAMPGDRDKC 1316
Query: 1068 LGVGMNAYLTKPI 1080
+ GM+ YL+KP+
Sbjct: 1317 IAAGMDDYLSKPV 1329
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G R+L+ +D P+ + + LE G V +G + ALN M A+ + G
Sbjct: 782 LQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNG---IIALNAMQASAEA-------G 831
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P +D+ L+D +MPK+DG +T+ R +E +V +T+ +
Sbjct: 832 KP--------YDVALLDMKMPKIDG--STLG-RLILAEPDWAKTKLVLMTSMHAGDSAQP 880
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL 1092
L G YL KP+ +++ ++ ++
Sbjct: 881 LLKSGFADYLVKPVKESQLLESLQKI 906
>gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
Length = 969
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 224/447 (50%), Gaps = 70/447 (15%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 289 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKGS-LARQQRDHLNTIRKSSEI 347
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ + F L+ +EE++ M + + N++ V + +++P
Sbjct: 348 LLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTLVYNDVPN 407
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP R+ QI +NL+NN+IKFT +G +++R E D S
Sbjct: 408 NLMGDPLRLKQIITNLLNNAIKFTHTGEVVLRASLEEEDAS------------------- 448
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
N ++ R V DTG G+ +++ ++F++F Q D ST R++GGTGLG
Sbjct: 449 ------NGSVTLR--------VSVADTGMGLSRAQQRSLFDAFSQADASTARQYGGTGLG 494
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + L +MGG+I + + G+ L S+ + Q +D+D P +
Sbjct: 495 LAISKRLAEEMGGKIGLESELGKGSTFWFTL---TSTRASQ-HDSDSPRNGL------RG 544
Query: 712 ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTN 771
ERMI +L ++K + L + +LR+ + VSS G A E + E T
Sbjct: 545 ERMI---YLEQQKTTGL------AMEHLLRDWGVAVERVSSPG--AMQERIEQAQREQTG 593
Query: 772 IKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFH--RKAMFAWVVNHQTTSPIKTELS 829
V +I I L+S +R ++S+++ R + + T P+ ++S
Sbjct: 594 FA-------VALIGINRHLLNSSQYRSLVHSIEVDRDCRTLLLTPTLESHDT-PLVAKVS 645
Query: 830 REGQNIVVTKPLYKGKMIQLLETAVRG 856
+TKP+ +G++ L V G
Sbjct: 646 SH-----LTKPVLRGELYNELVLLVHG 667
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDL+ MD QMP MDG T +R+ E+ G + I+ALTAHAM+ + + G + Y
Sbjct: 738 QFDLVFMDLQMPGMDGVATTQRLRQLETA-GCQRAAIIALTAHAMSDERGRLARQGFDGY 796
Query: 1076 LTKPIDSERMVSTI 1089
+TKP+ S +++ +
Sbjct: 797 MTKPVSSRQLLDAV 810
>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
Length = 1205
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 40/302 (13%)
Query: 380 CILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMA 439
I + + I++L N ++ A+ ++ AR +A+ +N KS FLANMSHE+RTPM
Sbjct: 440 IIFMSTIVFIVLLANKSHAALEKSADKLAI--ARDEADYANQAKSDFLANMSHEIRTPMN 497
Query: 440 AIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
AIIG+ + LK+D LT Q + + ++K S+ LL L+N ILD SK+E+GK+++E+ +F
Sbjct: 498 AIIGMSYLALKTD--LTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFR 555
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
L+ L+ + ++ ++ S +E ++ S ++P + GDP R+ QI +NL NN++KFT G
Sbjct: 556 LENVLDNISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQG 615
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+ I +NL E++ + L F V DT
Sbjct: 616 EVKITITADNL-----------------------------------ENDDVTLRFAVSDT 640
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G G+ + + +F F Q D STTRK+GGTGLGL+I + L MGG+I+V + G+
Sbjct: 641 GIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEVRSQFGEGSTF 700
Query: 679 QL 680
+
Sbjct: 701 EF 702
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G +LL ED + Q +A ++LE V+V +G A++ +M
Sbjct: 873 LAGAHLLLVEDNEINQELAVELLESQNIQVTVAQNGQVAIDLYKQM-------------- 918
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD ILMDCQMP +DGY AT IR + ++ R IPI+A+TA M D ++
Sbjct: 919 ---------TFDGILMDCQMPVLDGYSATEIIRNTLND---RAIPIIAMTADVMERDRER 966
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GMN + KPID M ST+ R
Sbjct: 967 AYQSGMNDIIAKPIDVGIMFSTLAR 991
Score = 43.1 bits (100), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L L IL+ +D +++ IL+ + +V A++ALN ++S+
Sbjct: 723 LNHLNILIVDDNASARLIVEDILQSLNFSVRSANGVDSAIDALNHAAQSDSA-------- 774
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH--AMNADE 1064
FD+++ D QMP DG E I++SES N I+ LTA+ + AD
Sbjct: 775 ----------FDVVITDWQMPGKDGVELIHAIQQSES----LNPKILMLTAYDRQLLADS 820
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ G+ + + L KP+ + + I+ L
Sbjct: 821 VQERGLIVPSILDKPVTASHLFDAIVGL 848
>gi|452963793|gb|EME68850.1| hypothetical protein H261_16341 [Magnetospirillum sp. SO-1]
Length = 1583
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 153/282 (54%), Gaps = 38/282 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE + KS FLANMSHE+RTPM AIIG+ + LK+D LT Q+ V +I+ +
Sbjct: 840 AKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTD--LTPRQHDYVKKIQGAGQ 897
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ +E +FDL K L+ + + + + N+E V D+ ++P
Sbjct: 898 HLLGIINDILDFSKIEAGKLAVERVDFDLDKMLDNIAGLLTEKTGAKNLELVFDIPSDVP 957
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R + GD R+ QI N NN++KFT G I I
Sbjct: 958 RTLIGDSLRLGQILINYANNAVKFTEKGEIDII--------------------------- 990
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++K+ R ++++ L F V DTG G+ + + +F+SFEQ D STTRK GGTGL
Sbjct: 991 ARVKE--------RGEDEVLLYFAVRDTGIGLTEEQMGRLFQSFEQADTSTTRKFGGTGL 1042
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
GL+I + L MGGE+ V + G+ +G + K+
Sbjct: 1043 GLAISKKLAELMGGEVGVESEYGKGSTFWFTARMGIGAARKR 1084
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 914 LIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
L T+ R + RR+ S S N I G RILL ED L Q VA ++L G
Sbjct: 1209 LFDTVMRMFGGPSAERRETAGELSPSQENLATI-AGARILLVEDNDLNQEVATELLTDAG 1267
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V V DG A+E + R +D++LMD QMP MDG
Sbjct: 1268 FLVEVAGDGAVALEMVQRN-----------------------SYDIVLMDMQMPVMDGVT 1304
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT+EIR+ +PIVA+TA+AM D +C+ GMN ++TKPID +++ + +LR
Sbjct: 1305 ATMEIRRLGRFDA---LPIVAMTANAMQRDRDRCIEAGMNDFITKPIDPDQLWTALLR 1359
Score = 47.4 bits (111), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
F R IG++R+ S + L G R L+ +D + V +L + V
Sbjct: 1072 FTARMGIGAARKRHLLPSPD--------LRGYRALVVDDNDNARAVLSDLLSSMTFRVRD 1123
Query: 979 VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEI 1038
+P G +AV+ + R AA+ +G P +D++L+D +MP MDG + +
Sbjct: 1124 LPSGREAVDEVKR--AAD--------RGEP--------YDIVLLDWRMPGMDGIDTARHL 1165
Query: 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ E R ++ +TA+ + G+ L KP+ + + T++R+
Sbjct: 1166 KALELNPAPR---LLMVTAYGREEVLNQIAEAGIEDVLIKPVSASILFDTVMRM 1216
>gi|374585041|ref|ZP_09658133.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
gi|373873902|gb|EHQ05896.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
Length = 967
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 139/257 (54%), Gaps = 36/257 (14%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
SQFLANMSHE+RTPM AIIGL E+L QL Q + +I +S LL +LN ILD S
Sbjct: 479 SQFLANMSHEIRTPMNAIIGLSELLNRT-QLDARQSDYIRKIVGASKGLLNILNDILDYS 537
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K+E G +ELE+ EF +Q L + DMFS+ + V+D+ +IP + GDP R+ Q+
Sbjct: 538 KIEGGYVELESIEFRMQSVLNGVRDMFSLTAEQKGLRFVVDVDGDIPSVLVGDPLRLGQV 597
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
+NL+ N+IKFT G + + C++
Sbjct: 598 LNNLVGNAIKFTERGGVHLHARCKD----------------------------------- 622
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
R D + F V DTG GI + + +F+SF Q D STTR++GGTGLGL+I R LV M
Sbjct: 623 RNDQTATIEFSVSDTGIGISPEEQKKLFQSFSQADSSTTRRYGGTGLGLAISRRLVQLME 682
Query: 664 GEIKVVKKNSPGTLMQL 680
+I++V G+L +
Sbjct: 683 SDIELVSNTGQGSLFRF 699
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
R L+G +L+ ED + + + ++L +G V +GL+A+ L ES +R
Sbjct: 718 RTLQGRHVLIVEDNEINRQILDELLCDMGLFVDTATNGLEAI-----ALVEESGKR---- 768
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
++ + MD +MP MDG EAT +RK EH A +P++A+TA A +
Sbjct: 769 ------------YEAVFMDLRMPLMDGLEATRRLRK---EHTADRLPVIAITATANEEER 813
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILRL 1092
++CL GMNA + KP D + S + R+
Sbjct: 814 QECLDAGMNAVVMKPFDMAEIRSILERV 841
>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
Length = 956
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 154/265 (58%), Gaps = 34/265 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 281 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS-PLPRQQRDHLNTIRKSSEI 339
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L+ F L+ +EE++ M + N++ V + +++P
Sbjct: 340 LLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPD 399
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP RV Q+ +NL+NN+IKFT +G +++R E+ DT
Sbjct: 400 NIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDT-------------------- 439
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
E N++ L + D+G G+ +++ +++F +F Q D ST R++GGTGLG
Sbjct: 440 -------------EHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLG 486
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV +MGG+I + + G+
Sbjct: 487 LAISKRLVEEMGGKIGLESELGKGS 511
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+ MD QMP MDG E T IR +S G+ + PI+ALTAHA+ ++++ G + Y+
Sbjct: 727 FDLVFMDLQMPGMDGVETTARIRDLDS--GSHHTPIIALTAHALADEQERLAQQGFDGYM 784
Query: 1077 TKPIDSERMVSTILRLT 1093
KPI S ++V I T
Sbjct: 785 PKPISSSQLVELIREYT 801
>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 178/332 (53%), Gaps = 31/332 (9%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
IS+S + VI + I+ S+ ++ + + +++AEA++ KSQFLA +SHE+
Sbjct: 336 ISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEI 395
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D LT+ Q + AL+ L+N +LD +K+E+GK++LE+
Sbjct: 396 RTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLES 454
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +S+ +P + GDPGR QI +NL+ NSIKF
Sbjct: 455 VPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKF 514
Query: 555 TSSGHIIIRGWC---ENLDTS---KNTAEFPTDRKKFGRAFRTKLKQ------QANNAMN 602
T GHI ++ NL T ++ A K A T + +A ++ N
Sbjct: 515 TERGHIFVQVHLADHSNLATESKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRN 574
Query: 603 FREDNKLALCFE------------------VDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
E+ KL L +E V+DTG GI VF F Q D ST+R
Sbjct: 575 SWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRT 634
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+GGTG+GLSI + LV MGG+I V + G+
Sbjct: 635 YGGTGIGLSISKCLVELMGGQINFVSRPHVGS 666
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 48/179 (26%)
Query: 940 SSNQKR--------ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
SSN++R +L G IL+ +D + VA L+K GA V V G A+ +L
Sbjct: 832 SSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASL-- 889
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE------- 1044
+ P +F L LMD QMP+MDG+EAT +IR E++
Sbjct: 890 ------------------QVPH--KFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVA 929
Query: 1045 ----------HGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
AR ++P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 930 CDDSDTDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKF 988
>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
Length = 932
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 155/266 (58%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL+N Q + I+KS+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSNSQTDYLQTIEKSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN F+ ++ LEE++++ + +E L + IP
Sbjct: 338 NLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + GDP R+ QI +NL+ NSIKFT G N+D S
Sbjct: 398 QGLVGDPLRIQQILTNLVGNSIKFTERG---------NIDIS------------------ 430
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++ Q+ +++ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 431 VEIRSQSGDSVE--------LQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGEI + + G+
Sbjct: 483 GLVITQKLVSQMGGEISLTSRLHQGS 508
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 28/152 (18%)
Query: 950 LRILLAEDTPL-IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L +L +D P +++++ + E+V TV+ +G QAV LA E
Sbjct: 668 LTVLAVDDNPANLKLISALLRERV-ETVTACSNGQQAVN-----LATEK----------- 710
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++DLI MD QMP MDG A I++ E ++ P++A+TAHAM + + L
Sbjct: 711 -------KYDLIFMDIQMPLMDGVTACQHIKELELN---KDTPVIAVTAHAMAGERDRLL 760
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
GM+ YLTKPI+ + ++ N +E+
Sbjct: 761 AAGMDDYLTKPIEEHVLQQVLVHWNPNTCTES 792
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AE +N KS+FLA MSHE+RTPM A+IG+ +L D LT EQ + I+ S A
Sbjct: 709 ARESAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMNLTEEQRDYIDTIRTSGDA 767
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ELEN F+LQ +EE +D+F+ + + +E + + P+
Sbjct: 768 LLTIINDILDFSKIESGKLELENHPFNLQTCIEEALDLFAPKAAEKGLELLYQIEVRTPQ 827
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT---------DR 582
+ D R+ QI NLI NS+KFT +G I++ L + + A+ T
Sbjct: 828 KIISDVTRLRQILVNLIGNSVKFTHTGEIVVSVNATRLTSPTSQAKLATPLVSADPGNGD 887
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
K G R+ Q A F+ F + DTG GI + + +F F Q D STT
Sbjct: 888 KPSGLQPRSP-DQSPPVAYEFQ--------FSIRDTGIGIPSHRRDRLFLPFSQVDASTT 938
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
R+ GGTGLGL+I + L MGG + + + G+ Y L A S K + D+
Sbjct: 939 RQFGGTGLGLAICKRLSELMGGRMWIESEEGVGS--TFYFTLIALSNPKANHSPDY 992
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 24/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA +IL+++G V +GL+ +EAL R+
Sbjct: 1154 LRILLAEDNIVNQKVALRILDRMGYRADVANNGLEVLEALQRL----------------- 1196
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D+ILMD QMP+MDG EAT +I K E N P I+A+TA+AM D + CL
Sbjct: 1197 ------SYDVILMDVQMPEMDGLEATRQICKKYGEGLQLNKPKIIAMTANAMQGDREICL 1250
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ Y+TKPI E ++ +
Sbjct: 1251 AAGMDDYITKPIRLEELIKVL 1271
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM-NADEKKCLGVGMNAY 1075
FDL ++D QMP+MDG I +S+ +++P+V T+ + E + + A+
Sbjct: 1048 FDLAILDMQMPEMDGLTLAARI---QSQPQWQSLPLVMFTSMGKPESLEVDGISIKFAAF 1104
Query: 1076 LTKPIDSERMVSTILRLTKNMP 1097
+ KPI ++ +T++++ P
Sbjct: 1105 INKPIKQSQLYNTLIQILDETP 1126
>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 929
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 36/299 (12%)
Query: 368 YKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFL 427
YK L + + ++ +LVIGC IL+ + ++L A+ +AEAS+ KS+FL
Sbjct: 228 YKNLQMGLGGAILLLVIGC-GILLARQLAAVNVQLMQSGEEMRIAKEQAEASSRAKSEFL 286
Query: 428 ANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 487
ANMSHE+RTPM I+G+ E+L D +L +Q+ + +K S+ L+ ++N ILD SK+E
Sbjct: 287 ANMSHEIRTPMNGILGMTELLM-DTELNPQQFDYLRSVKVSAENLMDIINDILDFSKIEV 345
Query: 488 GKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNL 547
G++E E F L+ L + + SV+ + +E V + ++P + GDPGR+ Q+ NL
Sbjct: 346 GRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDTLIGDPGRLRQVLLNL 405
Query: 548 INNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 607
N++KFT G + L SK E P
Sbjct: 406 AGNAVKFTDQGEV-------ELLVSKQQ-ELPG--------------------------K 431
Query: 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
+L L FEV D G GI + +F FEQ D STT+K+GGTGLGL+I LV MGGEI
Sbjct: 432 ELLLRFEVRDRGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEI 490
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 914 LIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
+IH+ E + ++QP SS + + + ILL +D + + +A ILEK G
Sbjct: 635 VIHSELYEALKAIIHGKEQPGSSPVTRHHVREAQGSCSILLVDDVEINRELARIILEKRG 694
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V +GL+AV+A + RFDL+ MD QMP MDG+E
Sbjct: 695 HRVVQAANGLEAVDAARK-----------------------ERFDLVFMDIQMPLMDGFE 731
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
AT EIR E G + +P++A+TA+A+ D +CL GM+ Y+ KPI + + I
Sbjct: 732 ATNEIRSFELSQGLQPVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLCRVI 787
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
S+L+ + S P L+L D QMP DG+ +IR + + +V L +
Sbjct: 564 SMLEYARSRRP----VQLLLTDLQMPDCDGWGLVEQIRNDQRYD---ELKLVLLPSAGKR 616
Query: 1062 ADEKKCLGVGMNAYLTKPI 1080
D ++C + +N YLTKP+
Sbjct: 617 GDARRCRELKVNGYLTKPV 635
>gi|347758721|ref|YP_004866283.1| his Kinase A domain-containing protein [Micavibrio aeruginosavorus
ARL-13]
gi|347591239|gb|AEP10281.1| his Kinase A domain protein [Micavibrio aeruginosavorus ARL-13]
Length = 1125
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 143/265 (53%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS FLA +SHE+RTPM I+G++ +L D LT +Q I+ S A
Sbjct: 489 AKETADAANRSKSAFLAVISHEIRTPMTGIMGMVRLLL-DSHLTRDQVDYARTIQDSGDA 547
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
++ LLN ILD K+ESGKM+LEN +FDL + + +V + S + ++ ++ ++PR
Sbjct: 548 MIALLNDILDFEKIESGKMDLENVDFDLHRMINGVVTLMSGHATQKSISLTTEIGPDVPR 607
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GDP R+ Q+ NL+ NSIKFTS G + I
Sbjct: 608 FIKGDPVRLRQVLLNLVGNSIKFTSEGGVTI----------------------------- 638
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++++ +A + R L F V DTG GI + +F F Q D S +RK GGTGLG
Sbjct: 639 VVRREGGDADHHR------LYFAVRDTGAGISPDAQKNLFNPFAQADSSISRKFGGTGLG 692
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + L+ MGG I + K G+
Sbjct: 693 LAICQRLITAMGGTIAINSKEGQGS 717
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD++ MD ++P + G AT IR + ++P++ALT + + D ++C MN +L
Sbjct: 796 FDMVFMDIELPGISGMGATRAIRAMRVPQKS-HLPVIALTGNVRDDDIRQCYAANMNGHL 854
Query: 1077 TKPIDSERMVSTILRLTKN 1095
KPID +M + I ++ +
Sbjct: 855 AKPIDPAQMKAQIEKVLRG 873
>gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
Length = 937
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 150/266 (56%), Gaps = 36/266 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L + I++ AR +A +SN KS FLAN+SHELRTP+ +I G + +L L+NEQ
Sbjct: 268 LEVQNITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLY 327
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KSS LL L+N +LD SK+++GK+ELE FDL++ + +++DM S + ++
Sbjct: 328 LQTIRKSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINM 387
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++NIP++V GD R QI +NLI+N+IKFT G II+R E+ D
Sbjct: 388 AFYYAENIPQHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDDIG--------- 438
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ L F V D+G G+ + + +FESF QGD S
Sbjct: 439 --------------------------QCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASV 472
Query: 642 TRKHGGTGLGLSIVRTL-VNKMGGEI 666
TR+ GGTGLGL+I + L V+ M G+I
Sbjct: 473 TRQFGGTGLGLAISKQLVVHLMRGQI 498
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GL +L +D IV +L ++ T + G +A++ + + +S
Sbjct: 662 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQKS---------- 711
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNIPIVALTAHAMNADEKK 1066
P FDL+ MD QMP M G + T IR ES +PI+ALTAHA+ +++K
Sbjct: 712 -------PPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQK 764
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
L VGMN Y+TKPI E+++ + + TKN S TT
Sbjct: 765 LLKVGMNDYVTKPIQMEQIIQILTQWTKNNFSSQPTTT 802
>gi|430375892|ref|ZP_19430295.1| multi-sensor hybrid histidine kinase [Moraxella macacae 0408225]
gi|429541123|gb|ELA09151.1| multi-sensor hybrid histidine kinase [Moraxella macacae 0408225]
Length = 1118
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 149/268 (55%), Gaps = 39/268 (14%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM+++ IS +AR A +++ KS FLAN+SHELRTP+ +I G + +L LT+EQ
Sbjct: 352 EMEMQN--ISIRNARDAAVSASQTKSAFLANISHELRTPLNSIDGFINLLSRHGGLTHEQ 409
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
V I+KSS LL L+N +LD SK+E+GK+ L+N E DL + ++VDM S +
Sbjct: 410 DLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLILDNHELDLYATIYDVVDMLSPVAAEKG 469
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ + D++PR + GD R+ Q+ +NL+NN+IKFT G +++
Sbjct: 470 LRLAVFFYDDVPRYLLGDALRIKQVLTNLVNNAIKFTDEGEVVV---------------- 513
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
R L +NA+N V DTG GID + +F+SF QGD
Sbjct: 514 -----------RVGLDDNQDNALN----------ISVKDTGRGIDPEHQKLLFQSFSQGD 552
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
PS TR++GGTGLGL I + L MGG+I
Sbjct: 553 PSITRQYGGTGLGLVISKQLSYLMGGDI 580
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 19/174 (10%)
Query: 921 ERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP 980
+R Q+ D P S + Q +G+ +L +D +V +L ++G V
Sbjct: 765 DRRQLYQLLDDNPRSQVEPNLPQ---WQGVCVLAVDDHLPNLLVLEALLNELGVAVVTAN 821
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
G +AVE + R+ LQ S +++ + + DLI MD QMPKM G +A+++IR
Sbjct: 822 SGFEAVEYM-----------RNSLQLSDTKSSNWQKIDLIFMDIQMPKMSGKQASLQIRH 870
Query: 1041 -----SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+E +H ++PI+ALTAH+++ + K L G++ Y+ KPI+ +++ +
Sbjct: 871 LEKLANEQQHHQSHLPIIALTAHSLSDERAKLLAAGIDDYVGKPINQMQLIQLL 924
>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
Length = 2062
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 151/269 (56%), Gaps = 35/269 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA++ KS F+ANMSHE+RTPM IIG+ + L D +LT EQ + ++ S+ +
Sbjct: 1336 AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTD-LTLDTELTAEQREYLSMVQSSAGS 1394
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+G++EL+ EF L+ L + + S + +E V D++ ++P
Sbjct: 1395 LLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPD 1454
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDPGR+ QI +NL+ N+IKFTS G +
Sbjct: 1455 SLIGDPGRLRQIVNNLVGNAIKFTSQGEV------------------------------- 1483
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L + +++ E + L F V DTG GI + K +FE+F Q D S TR++GGTGLG
Sbjct: 1484 DLVVKVEKSLSCGE---VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLG 1540
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
L+I LV M G++ VV K+ G+ +
Sbjct: 1541 LTISTRLVELMKGKLSVVSKSGKGSTFEF 1569
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 24/138 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q +A ++LEK G V + +GLQAV SS+ R
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVA---------SSQLR---------- 1771
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+FDLILMD QMP G+EAT +IRK E E G PI+A+TAHA+ D KCL G
Sbjct: 1772 ----KFDLILMDVQMPHCGGFEATAQIRKREHEQGIHT-PIIAMTAHALARDRVKCLEAG 1826
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ Y++KPI+ +++ + I
Sbjct: 1827 MDDYISKPINPDQLKAMI 1844
>gi|333907033|ref|YP_004480619.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
gi|333477039|gb|AEF53700.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
Length = 1222
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 154/265 (58%), Gaps = 31/265 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++AE +N KS FL+NMSHE+RTPM AI+G+ L +L +Q + V ++ +S+ +
Sbjct: 459 ARQEAELANKMKSDFLSNMSHEIRTPMNAILGMSH-LALQGELNRKQRNYVEKVHRSAES 517
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GKMELE T+F+L+ L L ++ S++ + +E + D+++++P
Sbjct: 518 LLGIINDILDFSKIEAGKMELEQTDFNLEDVLIHLSNLLSLKAEDQELELLFDIAEDVPL 577
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ QI +NL NN++KFT G ++I +K + D K
Sbjct: 578 TLIGDPIRLGQILTNLGNNALKFTEEGEVVIH--------AKVLKRWNDDEHK------- 622
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ L F V DTG G+ + + +F+++ Q D STTRK+GGTGLG
Sbjct: 623 ---------------EWVQLQFSVQDTGIGMTPEQQQRLFKTYSQADSSTTRKYGGTGLG 667
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
LSI + L M G+I V + G+
Sbjct: 668 LSISKNLTELMEGQIWVESEQGSGS 692
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 71/143 (49%), Gaps = 25/143 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ILL ED + Q +A +L V V+V G +A++ LN A
Sbjct: 866 LAGKHILLVEDNEINQELASDLLTDVKINVTVANHGQEALDLLNSSQA------------ 913
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD +LMD QMP MDGY AT EIRK N+PI+A+TA+AM D
Sbjct: 914 ----------FDCVLMDVQMPIMDGYTATHEIRKLPR---FSNLPIIAMTANAMKEDLDA 960
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
L GMNA+LTKPI M T+
Sbjct: 961 ALDSGMNAHLTKPIQVAEMYKTL 983
>gi|428769506|ref|YP_007161296.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683785|gb|AFZ53252.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1390
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 166/327 (50%), Gaps = 60/327 (18%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
K+RAE L A+ +AE +N KS+FLA MSHE+RTPM A+IG+ +L D L NEQ
Sbjct: 693 KIRAEQELQL-AKEQAEKANQAKSEFLATMSHEIRTPMNAVIGMTGLL-LDTPLNNEQRE 750
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
I+ S+ +LL ++N ILD SK+ESGK+ELE + +EE +D+ + + N +E
Sbjct: 751 FAEIIRTSADSLLTIINDILDFSKIESGKLELEYQPLSIINVIEESLDLLAPKAINKGIE 810
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
+ ++ +IP+ + GD R+ QI NL+NN++KFT+ G I++ +N E+
Sbjct: 811 LIYFIAPDIPKTIMGDVTRLRQILVNLLNNAVKFTNEGEIVVSVGVSRQSIKENILEY-- 868
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
L F V DTG GI S+ +F+ F Q D S
Sbjct: 869 -----------------------------ELIFSVKDTGIGIPSSRMNKLFKPFSQVDAS 899
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
TTR +GGTGLGL+I LV MGG+I V ESK + DFP+
Sbjct: 900 TTRHYGGTGLGLAICNRLVTMMGGQIWV--------------------ESKGVIAGDFPS 939
Query: 701 TV---VVLATVGSMERMII----SQWL 720
+ L+ +GS+ I S WL
Sbjct: 940 SYQPNSSLSDLGSIFSFTINTKVSSWL 966
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 27/153 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED + Q V IL+++G VV +GL+ +E LNR
Sbjct: 1126 LKILIAEDNIVNQKVITNILKRLGYRADVVANGLEVMETLNRQ----------------- 1168
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRK--SESEHGARNIP--IVALTAHAMNADEK 1065
+DLILMD QMP+MDG AT +IR + + IP I+A+TA+AM D +
Sbjct: 1169 ------SYDLILMDVQMPEMDGLTATRQIRTLWNSPNSNFQGIPPYIIAMTANAMEGDRE 1222
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
CL GM+ YL+KP+ E+++ + L K P+
Sbjct: 1223 ICLAAGMDDYLSKPVRVEKLMEKLKNLRKTYPN 1255
>gi|449116753|ref|ZP_21753199.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
gi|448953008|gb|EMB33804.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
Length = 676
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + K + +++ +
Sbjct: 650 SMGLNDIIKKSFNKKQLFEMV 670
>gi|449104263|ref|ZP_21741003.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
gi|448963282|gb|EMB43960.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
Length = 676
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|449111016|ref|ZP_21747615.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
gi|449114168|ref|ZP_21750648.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|448957165|gb|EMB37917.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|448959279|gb|EMB40000.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
Length = 676
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|434393415|ref|YP_007128362.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265256|gb|AFZ31202.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1079
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 145/265 (54%), Gaps = 31/265 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+ KSQFLANMSHE+RTPM AI+G+ +L S L+ +Q + I+ SS
Sbjct: 423 AKTDAEAATRVKSQFLANMSHEIRTPMNAIVGMANLLLSTP-LSQQQKEFLETIRTSSNV 481
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL LLN +L+LSK+ESGK+ELE F+L+ +EE V++ + + + N+E + + P
Sbjct: 482 LLILLNDVLELSKIESGKLELEQRAFNLRTCVEEAVEILAFKAAEKNIELAYIIHPDTPS 541
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GD R+ QI NL++NS+KFT G +++ L+ + A
Sbjct: 542 NIVGDVTRLRQILVNLLSNSVKFTHQGEVVVSVTARELECANKLA--------------- 586
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ + F V DTG GI E +F++F QGD S TR++GGTGLG
Sbjct: 587 ---------------GRYEIQFAVKDTGIGIPIETIEHLFQAFSQGDASITREYGGTGLG 631
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + L M G I V + G+
Sbjct: 632 LAIAKQLCEMMQGRIWVETQADQGS 656
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 27/146 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q +A IL+ +G V +GL+ ++ L R
Sbjct: 815 LRILLAEDNIVNQKIALHILQSLGYHADVASNGLEVLDTLRRQ----------------- 857
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMPKMDG AT R+ E GA P I+A+TA+AM D+++CL
Sbjct: 858 ------NYDVVLMDVQMPKMDGLTAT---RQIVQEFGAEIRPRIIAMTANAMQEDKEECL 908
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTK 1094
GMN Y++KPI E + +L+ K
Sbjct: 909 AAGMNDYISKPIQVEELTQALLKTPK 934
>gi|449105633|ref|ZP_21742335.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451969936|ref|ZP_21923165.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
gi|448967016|gb|EMB47660.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451701391|gb|EMD55863.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
Length = 676
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1038
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 181/337 (53%), Gaps = 37/337 (10%)
Query: 406 LISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQ 464
++S L A+ +AEA+N KSQFLANMSHE+RTPM A+IG+ +L + L +Q V
Sbjct: 272 MVSELQSAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLL-NTPLEAQQQDFVET 330
Query: 465 IKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLD 524
I+ S ALL L+N ILD SK+E+GK++LE F+++ +EE + + + + S N+E
Sbjct: 331 IRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYL 390
Query: 525 LSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 584
++ P + GD R+ Q+ NL+NN++KFT G +++ + +++ AE +D +
Sbjct: 391 INPPTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAE--SDLEV 448
Query: 585 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
A +++ F+V DTG GI K E +F+SF Q D STTRK
Sbjct: 449 IAEATPYEIQ------------------FDVKDTGIGIPPDKLERLFKSFSQVDASTTRK 490
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVV 704
GGTGLGL+I + L MGG+I V + S G S+ S I ++ PN V
Sbjct: 491 FGGTGLGLAISKQLSELMGGKIWVSSEVSVG-----------STFSFTITASEIPNYVSP 539
Query: 705 LAT----VGSMERMIISQWLRKKKVSTLETSEWHGLT 737
A + + +I+ +++ +L+ W LT
Sbjct: 540 KAASDVQLAGKQLLIVDDNATNREILSLQAQSWGMLT 576
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 25/131 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA L+++G V +GL+ +EAL R
Sbjct: 694 LRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEALERQ----------------- 736
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QMP+MDG AT E+ + S +I +A+TA+AM D + CL
Sbjct: 737 ------AYDVVLMDVQMPEMDGLTATREVCQRWSPEDRPHI--IAMTANAMQGDREMCLD 788
Query: 1070 VGMNAYLTKPI 1080
GM+AY+TKP+
Sbjct: 789 AGMDAYITKPV 799
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL ++D QMP+MDG +IR +E + +P+V L++ + + + +A L
Sbjct: 595 FDLAVLDMQMPEMDGVTLAEKIR---AEPNGKTLPLVVLSSLGQDDIRARAGDINFSAIL 651
Query: 1077 TKPIDSERMVSTILRLTKN 1095
KP+ ++ S + ++ N
Sbjct: 652 NKPVQQAQLQSVLAQVLGN 670
>gi|358451271|ref|ZP_09161705.1| multi-sensor hybrid histidine kinase [Marinobacter manganoxydans
MnI7-9]
gi|357224504|gb|EHJ03035.1| multi-sensor hybrid histidine kinase [Marinobacter manganoxydans
MnI7-9]
Length = 957
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 39/313 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 281 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKS-PLPRQQRDHLSTIRKSSEI 339
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L+ F L+ +EE++ M + N++ V + +++P
Sbjct: 340 LLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPD 399
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP RV Q+ +NL+NN+IKFT +G +++R E DT
Sbjct: 400 NIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEDT-------------------- 439
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ N++ L + D+G G+ +++ +++F +F Q D ST R++GGTGLG
Sbjct: 440 -------------DSNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLG 486
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL--LGASSESKQIYDADFPNTVVVL---A 706
L+I + LV +MGG+I + + G+ L L S E+ DA V+ L
Sbjct: 487 LAISKRLVEEMGGKIGLESELGKGSTFWFTLTSELATSGEAIAPRDALRGERVIYLEQQK 546
Query: 707 TVGSMERMIISQW 719
T G ++ W
Sbjct: 547 TTGLAVEHLLRDW 559
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+ MD QMP MDG E T +R E + G PI+ALTAHA++ ++++ G + Y+
Sbjct: 726 FDLVFMDLQMPGMDGVETTARLR--EMDTGNHRTPIIALTAHALSDEQERLTKQGFDGYM 783
Query: 1077 TKPIDSERMVSTILRLT 1093
KPI S ++ I T
Sbjct: 784 PKPISSGQLNDIIHEYT 800
>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
TXDOH]
Length = 926
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 163/299 (54%), Gaps = 44/299 (14%)
Query: 387 ICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
+C L+ ++ E+KL+ +AR ++ +N KS FLA MSHE+RTP+ AIIG L
Sbjct: 416 LCTLLDISMRKESELKLK-------EARIASDQANKAKSTFLATMSHEIRTPLNAIIGNL 468
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
E+L+ QL+N+Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+Q L+E
Sbjct: 469 ELLRRS-QLSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQE 527
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
+VD ++ + ++ + +L + + R GDP R+ QI SNLI N+IKFT GHI
Sbjct: 528 IVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHI----- 582
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
++D + A Q ++A+ V+DTG GI
Sbjct: 583 --SVDVHQAKA------------------AQGDSAIE----------IWVNDTGIGIRPD 612
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ T+F+ + Q D S R+ GG+GLGL + + L MGG I+V GT + + L L
Sbjct: 613 RIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPL 671
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
RRD P + S L +L+AED P + + LE + V VV +G A+ A
Sbjct: 688 RRDAPAHARPS----------LHVLVAEDHPANRALLRDQLEALDHRVDVVENGRDALRA 737
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
++D++L D MP++DG+ + K +
Sbjct: 738 FGEH-----------------------QYDVVLTDLGMPELDGFGFAMFANKMRA----- 769
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+IPIVA+TAHA D ++ VG+ + KP+
Sbjct: 770 SIPIVAMTAHATAEDYRRAKKVGIAEIVLKPL 801
>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
Length = 2062
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 156/283 (55%), Gaps = 40/283 (14%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
KE L+ L A+ AEA++ KS F+ANMSHE+RTPM IIG+ + L D +LT E
Sbjct: 1327 KETTLKNTL-----AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTD-LTLDTELTAE 1380
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + ++ S+ +LL ++N ILD SK+E+G++EL+ EF L+ L + + S +
Sbjct: 1381 QREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQK 1440
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+E V D++ ++P ++ GDPGR+ QI +NL+ N+IKFTS G +
Sbjct: 1441 CIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEV----------------- 1483
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
L + +++ E + L F V DTG GI + K +FE+F Q
Sbjct: 1484 --------------DLVVKVEKSLSCGE---VVLKFSVIDTGIGIPKDKLHLIFEAFSQA 1526
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
D S TR++GGTGLGL+I LV M G++ VV K+ G+ +
Sbjct: 1527 DGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEF 1569
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 24/138 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q +A ++LEK G V + +GLQAV SS+ R
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVA---------SSQLR---------- 1771
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+FDLILMD QMP G+EAT +IRK E E G PI+A+TAHA+ D KCL G
Sbjct: 1772 ----KFDLILMDVQMPHCGGFEATAQIRKREHEQGIHT-PIIAMTAHALARDRVKCLEAG 1826
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ Y++KPI+ +++ + I
Sbjct: 1827 MDDYISKPINPDQLKAMI 1844
>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
DSS12]
gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
DSS12]
Length = 931
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 156/277 (56%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A ++ KS+FLANMSHELRTP+ +IG ++LK+ L + Q V I+KS+
Sbjct: 285 AKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT--PLHSSQQDYVNTIEKSAT 342
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GKM LEN F L++ L++ + + S ++E V+D+ +IP
Sbjct: 343 NLLGIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQSIP 402
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
++ GD R QI +NL+ N+IKFT G + R
Sbjct: 403 EDLSGDAMRFSQIITNLVGNAIKFTDIGSV---------------------------HLR 435
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L + N+ +N R C EV DTG GID+S+ E +F++F Q D S +R+ GGTGL
Sbjct: 436 LQLTESTNDKVNLR-------C-EVIDTGIGIDESQQELLFQAFGQADSSISRRFGGTGL 487
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + L+N+MGG+I K + G+ L L S
Sbjct: 488 GLIITKRLINRMGGQIGCHSKPNTGSSFWFTLPLSTS 524
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
E + +L +D P + +L++V + V+VV G A++ ++ RS
Sbjct: 676 EAMSVLAVDDNPANLKLIDTLLKEVVSQVTVVDSGQGAIK---------QAQERS----- 721
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
FDLI MD QMP DG AT +IR+ RN PI+A+TAH + + ++
Sbjct: 722 ---------FDLIFMDIQMPGTDGISATKQIRQHSLN---RNTPIIAVTAHTIAEERERI 769
Query: 1068 LGVGMNAYLTKPIDSERMVSTILR 1091
GM+ YL KPID + S I R
Sbjct: 770 EQSGMDGYLPKPIDEASLRSVISR 793
>gi|422341206|ref|ZP_16422147.1| sensor protein [Treponema denticola F0402]
gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
Length = 676
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 151/267 (56%), Gaps = 29/267 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLM 678
L+I + ++ M G+I + S G++
Sbjct: 344 LAISKNIITMMKGQIGIKDNISRGSVF 370
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|449108510|ref|ZP_21745152.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
gi|448961311|gb|EMB42016.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
Length = 676
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G +IL+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKILVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|449124538|ref|ZP_21760857.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|449129541|ref|ZP_21765771.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
gi|448942869|gb|EMB23763.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|448945589|gb|EMB26459.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
Length = 676
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ IIG++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|406660413|ref|ZP_11068545.1| Signal transduction histidine-protein kinase BarA [Cecembia
lonarensis LW9]
gi|405555798|gb|EKB50804.1| Signal transduction histidine-protein kinase BarA [Cecembia
lonarensis LW9]
Length = 716
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 147/268 (54%), Gaps = 35/268 (13%)
Query: 400 MKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
+K RAEL S L A+ +AEA+N KS+FLANMSHE+RTP+ +IG ++L + D L+NEQ
Sbjct: 180 IKKRAELESFLIQAKEEAEAANRSKSEFLANMSHEIRTPLNGVIGFTDLLMNSD-LSNEQ 238
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
V S+++LL L+N ILD SK+E+GK+E+E E D+ EE D+ +
Sbjct: 239 RQYVLSANISAHSLLGLINDILDFSKIEAGKLEIEQLETDILDLAEETADIVKFNTAKKQ 298
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E +L++ +IPR + DP R+ QI NL+ N+IKFT G + + + + + +
Sbjct: 299 IEFLLNIPHDIPRYFQVDPIRLKQILVNLLGNAIKFTEKGEVELSIYFKEIQGA------ 352
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
DN+ F V DTG GI + +F SF Q D
Sbjct: 353 ---------------------------DNEGLFTFSVRDTGIGISDEQKPKLFRSFSQAD 385
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
STTR++GGTGLGL I + L KM +I
Sbjct: 386 ASTTRRYGGTGLGLVISQMLAEKMDTQI 413
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 35/182 (19%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILE-----GLRILLAEDTPLIQIVACK 967
+L H + R H SS + Q N K ILE IL+AED PL ++
Sbjct: 559 ELFHCLQRLSH---SSAKPQALPQ-----NTKDILEETNQSSFNILIAEDVPLNMLLLKT 610
Query: 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027
I+ + EA N A ++ ++ E PD LI MD QMP
Sbjct: 611 IISNKYPKAKIT-------EAFNGQKAIDAYKK---------EKPD-----LIFMDVQMP 649
Query: 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
+ DG+EAT EIR+ E G PIVALTA A+ +++++CL GMN +LTKPID E++
Sbjct: 650 EKDGFEATFEIRELEKASGEFT-PIVALTAGALESEKQRCLNAGMNYFLTKPIDKEKLAE 708
Query: 1088 TI 1089
+
Sbjct: 709 VL 710
>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
Length = 1005
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 173/325 (53%), Gaps = 38/325 (11%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+++AEA++ KSQFLA +SHE+RTPM ++G+L+ +L ++ + T Y+ Q+ A
Sbjct: 373 KKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQV--CGKA 430
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK++LE+ FDL+ L++++ +FS + +E + +S+ +P
Sbjct: 431 LISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPE 490
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN----------------LDTSKNT 575
+ GDPGR QI +NL+ NSIKFT GHI ++ + ++ K+
Sbjct: 491 ILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDE 550
Query: 576 A-EFPT-------------DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG 621
A PT D + F+ L + N + +K+ L V+DTG G
Sbjct: 551 AIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVSVEDTGIG 610
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681
I VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 611 IPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFT 670
Query: 682 LLL-----GASSESKQIYDADFPNT 701
+L A S+SK + P++
Sbjct: 671 AVLRRCDKNAISDSKTVALHPLPSS 695
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 924 QIGSSRRDQPCS--SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
Q +RD S + S + +L G IL+ +D + VA L+K GA V V
Sbjct: 833 QPSHEKRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVES 892
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G A+ SLLQ P +FDL LMD QMP+MDG+EAT +IR
Sbjct: 893 GKDAL---------------SLLQ-----VPH--KFDLCLMDIQMPEMDGFEATRQIRAM 930
Query: 1042 E---------SEHGAR--------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER 1084
E SE G+ ++PI+A+TA + A ++C GM+ Y++KP + ++
Sbjct: 931 EGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQ 990
Query: 1085 MVSTILRL 1092
+ + +
Sbjct: 991 LFQAVQKF 998
>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1038
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 181/337 (53%), Gaps = 37/337 (10%)
Query: 406 LISHLDA-RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQ 464
++S L A + +AEA+N KSQFLANMSHE+RTPM A+IG+ +L + L +Q V
Sbjct: 272 MVSELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLL-NTPLEAQQQDFVET 330
Query: 465 IKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLD 524
I+ S ALL L+N ILD SK+E+GK++LE F+++ +EE + + + + S N+E
Sbjct: 331 IRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYL 390
Query: 525 LSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 584
++ P + GD R+ Q+ NL+NN++KFT G +++ + +++ AE +D +
Sbjct: 391 INPPTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAE--SDLEV 448
Query: 585 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
A +++ F+V DTG GI K E +F+SF Q D STTRK
Sbjct: 449 IAEATPYEIQ------------------FDVKDTGIGIPPDKLERLFKSFSQVDASTTRK 490
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVV 704
GGTGLGL+I + L MGG+I V + S G S+ S I ++ PN V
Sbjct: 491 FGGTGLGLAISKQLSELMGGKIWVSSEVSVG-----------STFSFTITASEIPNYVSP 539
Query: 705 LAT----VGSMERMIISQWLRKKKVSTLETSEWHGLT 737
A + + +I+ +++ +L+ W LT
Sbjct: 540 KAASDVQLAGKQLLIVDDNATNREILSLQAQSWGMLT 576
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 25/131 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA L+++G V +GL+ +EAL R
Sbjct: 694 LRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEALERQ----------------- 736
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QMP+MDG AT E+ + S +I +A+TA+AM D + CL
Sbjct: 737 ------AYDVVLMDVQMPEMDGLTATREVCQRWSPEDRPHI--IAMTANAMQGDREMCLD 788
Query: 1070 VGMNAYLTKPI 1080
GM+AY+TKP+
Sbjct: 789 AGMDAYITKPV 799
Score = 44.3 bits (103), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL ++D QMP+MDG +IR +E + +P+V L++ + + + +A L
Sbjct: 595 FDLAVLDMQMPEMDGVTLAEKIR---AEPNGKTLPLVVLSSLGQDDIRARAGDINFSAIL 651
Query: 1077 TKPIDSERMVSTILRLTKN 1095
KP+ ++ S + ++ N
Sbjct: 652 NKPVQQAQLQSVLAQVLGN 670
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 177/340 (52%), Gaps = 31/340 (9%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
IS + VI + I+ S+ ++ + + +++AEA++ KSQFLA +SHE+
Sbjct: 336 ISTPSGVFVICMLVGYIVFAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEI 395
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D LT+ Q + AL+ L+N +LD +K+E+GK++LE+
Sbjct: 396 RTPMNGVLGMLDMLLDTD-LTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLES 454
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + +E + +S+ +P + GDPGR QI +NL+ NSIKF
Sbjct: 455 VPFDLRSILDDVIALFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIITNLVGNSIKF 514
Query: 555 TSSGHIIIRGWC---ENLDTSK------NTAEFPTDRK---KFGRAFRTKLKQQANNAMN 602
T GHI ++ NL T N D K G + T +A ++ N
Sbjct: 515 TERGHIFVQVHLADHSNLATESEVEPVANGMNGHKDEKTAVATGVSLNTLSGFEAADSRN 574
Query: 603 FREDNKLALCFE------------------VDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
E+ KL L +E V+DTG GI VF F Q D ST+R
Sbjct: 575 SWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRT 634
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+GGTG+GLSI + LV MGG+I V + G+ +L
Sbjct: 635 YGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFTAVL 674
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 50/180 (27%)
Query: 940 SSNQKR--------ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
SSN++R +L G IL+ +D + VA L+K GA V V G A+
Sbjct: 833 SSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDAL----- 887
Query: 992 MLAAESSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYEATIEIR----------- 1039
+LLQ P +F L LMD QMP+MDG+EAT +IR
Sbjct: 888 ----------ALLQ--------VPYKFHLCLMDIQMPEMDGFEATQQIRTMEAKANEQAV 929
Query: 1040 ---KSESEHGAR----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
SE++ R ++P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 930 ACDDSETDGATRAAKWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKF 989
>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
Bt4]
gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
E264]
Length = 987
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 163/299 (54%), Gaps = 44/299 (14%)
Query: 387 ICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
+C L+ ++ E+KL+ +AR ++ +N KS FLA MSHE+RTP+ AIIG L
Sbjct: 477 LCTLLDISMRKESELKLK-------EARIASDQANKAKSTFLATMSHEIRTPLNAIIGNL 529
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
E+L+ QL+N+Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+Q L+E
Sbjct: 530 ELLRRS-QLSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQE 588
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
+VD ++ + ++ + +L + + R GDP R+ QI SNLI N+IKFT GHI
Sbjct: 589 IVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHI----- 643
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
++D + A Q ++A+ V+DTG GI
Sbjct: 644 --SVDVHQAKA------------------AQGDSAIE----------IWVNDTGIGIRPD 673
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ T+F+ + Q D S R+ GG+GLGL + + L MGG I+V GT + + L L
Sbjct: 674 RIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPL 732
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
RRD P + S L +L+AED P + + LE + V VV +G A+ A
Sbjct: 749 RRDAPAHARPS----------LHVLVAEDHPANRALLRDQLEALDHRVDVVENGRDALRA 798
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
++D++L D MP++DG+ + K +
Sbjct: 799 FGEH-----------------------QYDVVLTDLGMPELDGFGFAMFANKMRA----- 830
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+IPIVA+TAHA D ++ VG+ + KP+
Sbjct: 831 SIPIVAMTAHATAEDYRRSKKVGIAEIVLKPL 862
>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
Length = 923
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 173/325 (53%), Gaps = 38/325 (11%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+++AEA++ KSQFLA +SHE+RTPM ++G+L+ +L ++ + T Y+ Q+ A
Sbjct: 291 KKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQV--CGKA 348
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK++LE+ FDL+ L++++ +FS + +E + +S+ +P
Sbjct: 349 LISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPE 408
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN----------------LDTSKNT 575
+ GDPGR QI +NL+ NSIKFT GHI ++ + ++ K+
Sbjct: 409 ILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDE 468
Query: 576 A-EFPT-------------DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG 621
A PT D + F+ L + N + +K+ L V+DTG G
Sbjct: 469 AIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVSVEDTGIG 528
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681
I VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 529 IPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFT 588
Query: 682 LLL-----GASSESKQIYDADFPNT 701
+L A S+SK + P++
Sbjct: 589 AVLRRCDKNAISDSKTVALHPLPSS 613
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 924 QIGSSRRDQPCS--SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
Q +RD S + S + +L G IL+ +D + VA L+K GA V V
Sbjct: 751 QPSHEKRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVES 810
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G A+ SLLQ P +FDL LMD QMP+MDG+EAT +IR
Sbjct: 811 GKDAL---------------SLLQ-----VPH--KFDLCLMDIQMPEMDGFEATRQIRAM 848
Query: 1042 E---------SEHGAR--------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER 1084
E SE G+ ++PI+A+TA + A ++C GM+ Y++KP + ++
Sbjct: 849 EGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQ 908
Query: 1085 MVSTILRL 1092
+ + +
Sbjct: 909 LFQAVQKF 916
>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 399
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 146/263 (55%), Gaps = 34/263 (12%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
R+A+A+N KS+FLANMSHE+RTPM +IG+ +L S+D LT EQ S V IK S ALL
Sbjct: 157 RQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSED-LTAEQLSYVKVIKTSGEALL 215
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
L+N+ILD SK+E+G++EL+ F ++ ++E+V + Q + N+ ++S IP
Sbjct: 216 ELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAIA 275
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GDP R+ Q+ NL+ N+IKFT G + I
Sbjct: 276 EGDPVRLRQVLLNLVGNAIKFTEVGGVAI------------------------------- 304
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+ + A + + F V D+G GI K + +F+ F+Q D ST RK+GGTGLGL+
Sbjct: 305 --ELSPAPADPAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLA 362
Query: 654 IVRTLVNKMGGEIKVVKKNSPGT 676
I R LV MGGE+ V + G+
Sbjct: 363 ICRRLVELMGGEVGVESEVGKGS 385
>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
E264]
gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
E264]
Length = 952
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 163/299 (54%), Gaps = 44/299 (14%)
Query: 387 ICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
+C L+ ++ E+KL+ +AR ++ +N KS FLA MSHE+RTP+ AIIG L
Sbjct: 442 LCTLLDISMRKESELKLK-------EARIASDQANKAKSTFLATMSHEIRTPLNAIIGNL 494
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
E+L+ QL+N+Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+Q L+E
Sbjct: 495 ELLRRS-QLSNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQE 553
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
+VD ++ + ++ + +L + + R GDP R+ QI SNLI N+IKFT GHI
Sbjct: 554 IVDAYAPLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHI----- 608
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
++D + A Q ++A+ V+DTG GI
Sbjct: 609 --SVDVHQAKA------------------AQGDSAIE----------IWVNDTGIGIRPD 638
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ T+F+ + Q D S R+ GG+GLGL + + L MGG I+V GT + + L L
Sbjct: 639 RIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTTVTVVLPL 697
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 38/152 (25%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
RRD P + S L +L+AED P + + LE + V VV +G A+ A
Sbjct: 714 RRDAPAHARPS----------LHVLVAEDHPANRALLRDQLEALDHRVDVVENGRDALRA 763
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
++D++L D MP++DG+ + K +
Sbjct: 764 FGEH-----------------------QYDVVLTDLGMPELDGFGFAMFANKMRA----- 795
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+IPIVA+TAHA D ++ VG+ + KP+
Sbjct: 796 SIPIVAMTAHATAEDYRRSKKVGIAEIVLKPL 827
>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1147
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 159/292 (54%), Gaps = 39/292 (13%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+L+++ +++ + LI AR AE ++ KS+FLANMSHE+RTP+ I+G+ + L
Sbjct: 473 LLVISEDITERKEAEQALIR---AREAAEQASRAKSEFLANMSHEIRTPINGIVGMTQ-L 528
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
+ QLT EQ + ++ S+ ALLRL+N ILD SK+E+GK+EL +F L+ + E +
Sbjct: 529 ALNTQLTPEQVEYLEAVETSAEALLRLINDILDFSKMEAGKLELVAVDFSLRDSIAETMT 588
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+VQ +E + ++++IP + GDPGR+ QI NLI N++KFT G ++++
Sbjct: 589 TLAVQAHAKGLELLYQVAESIPDTLTGDPGRLRQILINLIANALKFTERGEVVVK----- 643
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+D T ++ L F V DTG GI K +
Sbjct: 644 VDPDSETK------------------------------REIRLHFSVADTGIGIPAEKQQ 673
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F +FEQ D ST+RK+GGTGLGL+I LV M G I + + G++
Sbjct: 674 RIFNAFEQADGSTSRKYGGTGLGLAISSELVRMMDGSIWLESEPGRGSIFHF 725
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 30/159 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q +A K+LE++G TVSV +G +A++ L
Sbjct: 897 LHILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCLK------------------- 937
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIR---KSESEHGARNIPIVALTAHAMNADEKK 1066
+FDL+LMD QMP MDG EAT +R K+ +EH +PIVA+TA+AM D++K
Sbjct: 938 ----IQKFDLVLMDVQMPIMDGLEATRIVREHEKTSNEH----VPIVAMTAYAMKGDKEK 989
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
CL GM+ Y++KPI+++ + T+ L N E T R
Sbjct: 990 CLDAGMDGYISKPINAQELFETLEDLFHNETPEKTVEPR 1028
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCLGVGMNAY 1075
F L++ DC MP+MDG+E I +EH + P I+ LT+ D +C+ +G++AY
Sbjct: 799 FKLVITDCMMPEMDGFELVRRI----NEHPSWATPTIIMLTSAGERGDAARCMKLGISAY 854
Query: 1076 LTKPIDSERMVSTILRLTK---NMPSEATGTTR 1105
L KPI + TI R+ K + P++ + TR
Sbjct: 855 LLKPIKQSDLFFTISRVLKEPQDHPAQPSLITR 887
>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
Length = 905
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 174/319 (54%), Gaps = 10/319 (3%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ SV ILVI + IL +++ K+ + D + AE+++ KSQFLA +SHE+
Sbjct: 276 ITTSVGILVIVFLVGHILHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEI 335
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q +S L++L+N +LD +K+ESG+MELE
Sbjct: 336 RTPMNGVLGMLQMLMDTD-LDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEM 394
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + + +E + +S+ +P + GDP R+ QI +NL+ NS+KF
Sbjct: 395 VPFDLRTILDDILCLFSAEIKDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKF 454
Query: 555 TSSGHIIIRGWCEN-LDTSKNTAEFPTDRKKFG-RAFRTKLKQQANNAM-------NFRE 605
T GHI + E+ L T F + G +A +L + ++ N E
Sbjct: 455 TEQGHIFVCVHMEDELTTVSKEEGFDSCNTLSGVKAADLRLSWDSFKSLVGGLEDRNCGE 514
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
+ + F V+DTG GI + VF F Q D ST+R +GGTG+GLSI + LV M G
Sbjct: 515 LTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGS 574
Query: 666 IKVVKKNSPGTLMQLYLLL 684
+ V + G + ++
Sbjct: 575 MDFVSQPGIGATFRFSVVF 593
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 22/146 (15%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G +IL+ +D + + VA L K GA V V G A+ L
Sbjct: 766 LLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGKAAIARLQ--------------- 810
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
PS FD MD QMP+MDG+EAT +IR++E +PI+A+TA + A
Sbjct: 811 --PSH-----EFDACFMDVQMPEMDGFEATRKIREAEGHDCKCRLPILAMTADLIQATRD 863
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILR 1091
+C GM+ Y++KP + E++ + +
Sbjct: 864 ECTKCGMDGYVSKPFEEEQLYKAVAK 889
>gi|395007235|ref|ZP_10391000.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394314783|gb|EJE51647.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1622
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 151/274 (55%), Gaps = 38/274 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE S KS FLANMSHE+RTPM AIIG+ + LKS L Q+ V +I+++
Sbjct: 864 AKELAEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSG--LNTRQHDYVSKIQQAGQ 921
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ +E F L + LE + D+ + +E V D++ N+P
Sbjct: 922 HLLGVINDILDFSKIEAGKLTVEKQPFVLDRMLESVTDVVGYKAGAKGLELVCDVAANVP 981
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
N+ GD R+ QI N NN+IKFT G I I
Sbjct: 982 PNLLGDSLRLGQILINFANNAIKFTDQGEISIA--------------------------- 1014
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L +++ + +++L FEV DTG G+ + +FESF+Q D STTR++GGTGL
Sbjct: 1015 VRLLEES--------EKRVSLRFEVRDTGIGLTAEQMGRLFESFQQADTSTTRRYGGTGL 1066
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
GL+I ++L MGGE+ V+ + G+ + L L
Sbjct: 1067 GLAICKSLAELMGGEVGVISEFGNGSTFWVSLPL 1100
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+LL ED L Q+VA ++L G V V +G A++ L+
Sbjct: 1264 IRGARVLLVEDNELNQMVAVELLRDAGFDVDVAGNGQVAIQRLHE--------------- 1308
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+DL+LMD QMP MDG AT +R ++ +PIVA+TA+AM+AD ++
Sbjct: 1309 --------DNYDLVLMDMQMPVMDGETATRHLR---ADPRFARLPIVAMTANAMDADRQR 1357
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
C GMN ++ KPID + + R + P
Sbjct: 1358 CFDAGMNDHVAKPIDPAALWKALARWIQPRPG 1389
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D V +L+ +G V GLQA+E L +A
Sbjct: 1115 LVGRRVLVVDDNHTAATVLSDMLQAMGFEVEQAYSGLQALEILREAMAKNRF-------- 1166
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
F L+L+D MP MDG E IR G +P ++ +TA+ +
Sbjct: 1167 ----------FGLLLLDWHMPGMDGVELAGHIRS----LGMPQVPQMLMVTAYGREDVMR 1212
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILR-LTKNMPS 1098
G+ L KP+++ ++ T+++ L +P+
Sbjct: 1213 AARAQGIETVLIKPVNASLLLETLMQPLEHALPA 1246
>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
Length = 974
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 160/298 (53%), Gaps = 36/298 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+ +AEA++ KSQFLA +SHE+RTPM ++G+L+ +L +D +T + Y+ Q+ A
Sbjct: 350 KTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQM--CGRA 407
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK+ELE FDL+ ++++V +FS + +E + + DN+P+
Sbjct: 408 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 467
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGR--- 587
V GDP R QI +NL+ N++KFT GH+ +R EN + N K GR
Sbjct: 468 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEANQVLHGAMNGKGGRVES 527
Query: 588 ----AFRTKLKQQANNAMN----FR---------------------EDNKLALCFEVDDT 618
AF T +A + N F+ + N + L ++DT
Sbjct: 528 TTNGAFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLEGENSNQSDSNHVTLAISIEDT 587
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G GI + VF F Q D ST+R +GGTG+GLSI + L MGG+I S G+
Sbjct: 588 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 645
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 38/171 (22%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S + +L G IL+ +D + VA L+K GA VS V G A+
Sbjct: 817 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI----------- 865
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------------- 1042
SLLQ P RFD MD QMP+MDG+EAT +IR+ E
Sbjct: 866 ----SLLQ--PPH-----RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE 914
Query: 1043 -SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
S ++P++A+TA + A ++C+ GM+ Y++KP D E++ + RL
Sbjct: 915 GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 155/279 (55%), Gaps = 36/279 (12%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
L+ I + A+ AEA++ KS F+ANMSHE+RTPM IIG+ + L D +LT EQ
Sbjct: 1335 LKETTIKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTD-LTLDTELTAEQREY 1393
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ ++ S+ +LL ++N ILD SK+E+G++EL+ ++F L+ L + + + + +E
Sbjct: 1394 LTMVQSSAGSLLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLEL 1453
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
V D++ +IP ++ GDPGR+ QI +NL+ N+IKFTS G + +
Sbjct: 1454 VCDIASDIPDSLVGDPGRLRQIVTNLVGNAIKFTSEGEV----------------DLVVK 1497
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
K+ D ++ L F V D+G GI + K +FE+F Q D S
Sbjct: 1498 IDKY-------------------IDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSI 1538
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
TR++GGTGLGL+I LV M G+++VV K G+ +
Sbjct: 1539 TRRYGGTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEF 1577
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 24/138 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q +A ++LEK G V++ +GLQAV A
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAAC---------------------- 1777
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+ FDLILMD QMP M G+EAT +IRK ES G PI+A+TAHA+ D KC+ G
Sbjct: 1778 -EIKHFDLILMDVQMPHMGGFEATAQIRKLESNEGIHT-PIIAMTAHALARDRVKCIEAG 1835
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ Y++KPI+ +++ S I
Sbjct: 1836 MDDYISKPINPDQLKSMI 1853
>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
Length = 905
Score = 173 bits (438), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 174/319 (54%), Gaps = 10/319 (3%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ SV ILVI + IL +++ K+ + D + AE+++ KSQFLA +SHE+
Sbjct: 276 ITTSVGILVIVFLVGHILHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEI 335
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L Q +S L++L+N +LD +K+ESG+MELE
Sbjct: 336 RTPMNGVLGMLQMLMDTD-LDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEM 394
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ L++++ +FS + + +E + +S+ +P + GDP R+ QI +NL+ NS+KF
Sbjct: 395 VPFDLRTILDDILCLFSAEIKDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKF 454
Query: 555 TSSGHIIIRGWCEN-LDTSKNTAEFPTDRKKFG-RAFRTKLKQQANNAM-------NFRE 605
T GHI + E+ L T F + G +A +L + ++ N E
Sbjct: 455 TERGHIFVCVHMEDELTTVSKEEGFDSCNTLSGMKAADPRLSWDSFKSLVGGLEDRNCGE 514
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
+ + F V+DTG GI + VF F Q D ST+R +GGTG+GLSI + LV M G
Sbjct: 515 LTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGS 574
Query: 666 IKVVKKNSPGTLMQLYLLL 684
+ V + G + ++
Sbjct: 575 MDFVSQPGIGATFRFSVVF 593
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 22/146 (15%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G +IL+ +D + + VA L K GA V V G A+ L
Sbjct: 766 LLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGKAAIARLQ--------------- 810
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
PS FD MD QMP+MDG+EAT +IR++E +PI+A+TA + A
Sbjct: 811 --PSH-----EFDACFMDVQMPEMDGFEATRKIREAEGHDCKCRLPILAMTADLIQATRD 863
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILR 1091
+C GM+ Y++KP + E++ + +
Sbjct: 864 ECTKCGMDGYVSKPFEEEQLYKAVAK 889
>gi|255548469|ref|XP_002515291.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223545771|gb|EEF47275.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1138
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 173/594 (29%), Positives = 274/594 (46%), Gaps = 71/594 (11%)
Query: 113 AFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDP 172
A++RD N T+ IYS N SI S N ++ I WY++ DP
Sbjct: 126 AYYRD--GNETYAIYS---NSSIAPS--------------NSSALSLQIKCTWYKQAADP 166
Query: 173 ITGEKIGKASPIPPDDLINIAGISQV---PDGVAS----WHVAVSK-FTNSP--LLSAAL 222
TG+ G AS + L N + I + +G AS W A F NS L A+
Sbjct: 167 DTGKLYGNASESQANILANASWIQEALSSGNGHASIGNGWSSAQDIIFLNSVSILGQGAI 226
Query: 223 PVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATS--TNAPL 280
+ P AV+ A +E + G + L + +G +L+ +
Sbjct: 227 SLGFPVN------AVINFFNA-----------IEFYGGSLCLATVKGDVLSNGLPNTQLV 269
Query: 281 LTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFF 340
+T S NL+ + D D+ + +G S +P ++ K+G +Y
Sbjct: 270 ITGKSISFNLMNS-DGDH-IDHIGKV-------SCMPNKGMLRPSLLKIGEAKYMAYCSQ 320
Query: 341 LNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEM 400
L + + V + P ++ D LI+L+ V + + ++++ ++E+
Sbjct: 321 LEIMGVQSVYALAFPHHGVVSTVDRSTKVALILLLVMVVAVFISIFSFVVLMVRAATREI 380
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
L + LI ++A ++AE + KS A+ SH++R +A I GL+EI + E +
Sbjct: 381 HLSSALIRQMEATQQAERKSMNKSLAFASASHDIRAALAGITGLIEISYGEVS-PYELQT 439
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
+ Q+ + L+ LLN ILD+SKVE+GKM++E EFDL LE++VD+F ++
Sbjct: 440 NLHQMDDCAKDLVGLLNSILDMSKVEAGKMQVELEEFDLANLLEDVVDLFHPVGMQKGLD 499
Query: 521 TVLDLSDNIP---RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+LD D NV+GD G++ Q+ NL+ N++KFTS GH+ +R W S
Sbjct: 500 VILDPCDGSVLKFSNVKGDRGKLKQVLCNLLGNAVKFTSEGHVSVRAWARK--PSLEDKI 557
Query: 578 FPTDRKKFGRA----FRTKLKQQANNAMNFRED-NKLALCFEVDDTGCGIDQSKWETVFE 632
+ +K R F A + +++ N + FEVDDTG GI + ++VFE
Sbjct: 558 IASSQKGLWRHCSCWFMEHKDHDAETMDSMKQNPNCMEFLFEVDDTGIGIPKEMQKSVFE 617
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLLL 684
+F Q T GGTGLGL IV++LV MGGEI +V K N GT + L
Sbjct: 618 NFVQAK-ETAFGQGGTGLGLGIVQSLVRLMGGEIGIVDKENNEKGTCFKFNTFL 670
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 18/169 (10%)
Query: 922 RHQIGSSR-RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP 980
+ IGSS D+ C N SS++ L G+R L+A+D ++VA L K+GA+V +
Sbjct: 981 KDSIGSSEIHDRECG--NQSSDKP--LSGVRFLVADDDQASRMVAKGNLSKLGASVKLCA 1036
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
+G +A+E + L ++ RR S P +D ILMDC+MP M+GYEAT +IR
Sbjct: 1037 NGEEALELVRYGLQNQNKNRRY------SVAP----YDYILMDCEMPIMNGYEATRQIRL 1086
Query: 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
E + ++P++ALTA N + K GM+ +L KP++ ++++ I
Sbjct: 1087 EERSYDI-HMPVIALTADDDNGE--KMEEAGMDDHLHKPLNRDQLLKAI 1132
>gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
Length = 826
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 45/319 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
K++FLANMSHE+RTPM IIG+ ++L S+ L EQ V I+ SS ALL+++N ILDL
Sbjct: 451 KTEFLANMSHEIRTPMNGIIGMADLL-SETALPEEQEQYVQIIRTSSKALLKIINDILDL 509
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
+++ESGK+ LE +FDL++ +E VD+ + ++ + ++P++VR D GRV Q
Sbjct: 510 TRMESGKLSLEPVDFDLERCIESAVDILRPVAREKGLTLNVNYATDLPKSVRADDGRVRQ 569
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NL+ N++KFT+SG + +R L+ Q++
Sbjct: 570 ILVNLVGNAVKFTASGRVDVR----------------------------VLRAQSD---P 598
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+R L +V D+G G+ Q++ +F+ F Q D +TTR GGTGLGL+I R L +M
Sbjct: 599 YR------LTIDVQDSGIGMSQAQLNNIFDRFSQADAATTRSFGGTGLGLTISRLLAQQM 652
Query: 663 GGEIKVVKKNSPGTLMQLYLL----LGASSESKQIYDADFP---NTVVVLATVGSMERMI 715
G+I V + G+ LY+ LG ++ + D V+LA R++
Sbjct: 653 QGDITVHSEPGQGSCFSLYIQCDAPLGQPEQTDTAQEPDLDRIRGCKVLLAEDNRTNRLL 712
Query: 716 ISQWLRKKKVSTLETSEWH 734
I ++L V +E +
Sbjct: 713 IRKYLSDLTVELIEAENGY 731
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP + + + G ++LLAED +++ K L + + +G +AVE R
Sbjct: 680 QPEQTDTAQEPDLDRIRGCKVLLAEDNRTNRLLIRKYLSDLTVELIEAENGYEAVELCAR 739
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
R DLILMD MP+MDG AT IR P
Sbjct: 740 H-----------------------RPDLILMDMSMPEMDGLTATRLIRMQNHPQP----P 772
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
IVALTA+A +D + CL GMN +L+KPI+ + +++
Sbjct: 773 IVALTANAFASDREACLAAGMNGFLSKPINKKELLN 808
>gi|428212441|ref|YP_007085585.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000822|gb|AFY81665.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 992
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 148/267 (55%), Gaps = 36/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+ R A + + KSQFLANMSHE+RTPM ++G+ ++ +LT +Q I+ S+
Sbjct: 431 IQTREAALEAAHAKSQFLANMSHEIRTPMHGVLGIAGLMLHT-ELTPKQQEYAETIRISA 489
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILD SK+E+G+M LEN +F+L + L+++V++F Q + + L +N+
Sbjct: 490 KHLLGLINDILDFSKLEAGEMHLENLDFNLYECLQDVVNLFKPQAEDQGLTLKLQFQENL 549
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR VRGDP R+ QI NL++N+IKFT SG I + E SK R +
Sbjct: 550 PRFVRGDPSRLRQILLNLVSNAIKFTPSGSISVEAKLEATTHSKT------------RVY 597
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
F+V DTG GI +F+SF Q DPST+R++GGTG
Sbjct: 598 -----------------------FQVTDTGIGIPPEAQAKLFQSFSQVDPSTSRQYGGTG 634
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I LV+ M GEI V + + G+
Sbjct: 635 LGLAICEQLVSMMQGEIGVTSEVNQGS 661
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 25/148 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+ ED + Q V LE +G V +GL+A++ L
Sbjct: 705 LKILVVEDHLINQTVILSQLEILGYEADCVANGLEALKCL-------------------- 744
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E D +D++LMDCQMP MDGY AT E+R+ E R + ++ALTAHAM AD +KCL
Sbjct: 745 EAKD---YDIVLMDCQMPLMDGYTATRELRRREGNQN-RTV-VIALTAHAMKADREKCLA 799
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ YL+KP+D E + + R T+ +P
Sbjct: 800 SGMDDYLSKPVDEEDLARIVQRWTQKIP 827
>gi|407783399|ref|ZP_11130600.1| Signal transduction histidine kinase [Oceanibaculum indicum P24]
gi|407202124|gb|EKE72119.1| Signal transduction histidine kinase [Oceanibaculum indicum P24]
Length = 1016
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 163/312 (52%), Gaps = 36/312 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSS 469
ARR+AEA+ KS FLA+MSHE+RTPM ++ + E+L DQ LT+EQ I++SS
Sbjct: 346 ARRQAEAATEAKSNFLASMSHEIRTPMNGVMSMAELL---DQTPLTDEQRGMSAIIRQSS 402
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
ALL ++N ILD SK+E+GK+++E DL + +E++ D+ +++ + ++D+ +
Sbjct: 403 AALLGIINDILDFSKIEAGKLDIEMLTIDLSEIVEDVGDLLALRAEEKGLHLIVDIDPRL 462
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P ++GDP R+ QI NL N++KFT GH+ +R DT+K A
Sbjct: 463 PGRLQGDPTRLRQILLNLGGNAVKFTEEGHVTLR--VSLPDTAKPAA------------- 507
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L + EV D+G G+ + +F+ F Q D ST RK GGTG
Sbjct: 508 ----------------GATLPVRLEVIDSGIGLTPEQQGRLFQPFMQADSSTARKFGGTG 551
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVG 709
LGLSI L MGG I V + G+ + L + E+ +AD + + L V
Sbjct: 552 LGLSISHRLTEMMGGRIGVDSEAGKGSTFWVELPMAVMDEAGIRPEADIADARLALVGVP 611
Query: 710 SMERMIISQWLR 721
+ I+ ++R
Sbjct: 612 APLADAIAGYMR 623
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED P QIV + L ++G V +G A++ L AE+
Sbjct: 756 ILVAEDNPTNQIVIGRHLTRLGYAHEVAANGRLALDRLE----AETG------------- 798
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+ L+L D MP+MDG+E T IR E AR +PIVALTA A+ E++C G
Sbjct: 799 -----YGLLLTDFHMPEMDGFELTAAIRAQEEPDTAR-LPIVALTADALAGTEQQCFEAG 852
Query: 1072 MNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
M+ YLTKPI+S + + R+ + M +A R
Sbjct: 853 MDGYLTKPINS----AALARVLEEMLPQAQSLRR 882
>gi|428218985|ref|YP_007103450.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990767|gb|AFY71022.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1627
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 161/312 (51%), Gaps = 47/312 (15%)
Query: 357 EYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKA 416
EY + D+ Y+ +++S +L+I + +TN E LR ++++A
Sbjct: 869 EYEVEINDQVRYEEARVVVSGKNEVLII----VRDVTNRKLSEEALRL-------SKQEA 917
Query: 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLL 476
EA+N KS+FLANMSHE+RTPM A+IG+ +L D QL+ EQ I+ S+ ALL ++
Sbjct: 918 EAANKAKSEFLANMSHEIRTPMNAVIGMSGLLM-DTQLSPEQRDFAETIRNSADALLTII 976
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILD SK+ESGK+ LE F L +E VD+ + Q +N +E + +P ++GD
Sbjct: 977 NDILDFSKIESGKLTLEEQPFALLDCIEATVDLMAAQVANKGLEIATWVDTQVPSVIKGD 1036
Query: 537 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ 596
R+ QI NL+ N+IKFT G III L TAE
Sbjct: 1037 VTRLRQILVNLLGNAIKFTEQGEIIISAIAREL-----TAE------------------- 1072
Query: 597 ANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
+ + F V DTG GI +FESF Q D S TRK+GGTGLGL+I +
Sbjct: 1073 -----------QYEIHFAVKDTGIGIAPESMNRLFESFSQADTSITRKYGGTGLGLAISQ 1121
Query: 657 TLVNKMGGEIKV 668
L MGG + V
Sbjct: 1122 KLCRLMGGNMWV 1133
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 27/151 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA + +++G VV +GL+AV + ++
Sbjct: 1344 LRILLAEDNLVNQKVALNMFKRLGYRADVVANGLEAVTTVQQL----------------- 1386
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++ MD QMP+MDG EAT +R+ + G ++ P I+A+TA+A+ D ++CL
Sbjct: 1387 ------HYDVVFMDMQMPEMDGLEATRSLRQ---QTGRQDYPWIIAMTANALKGDRQRCL 1437
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
GMN Y++KP+ E ++ + R K + E
Sbjct: 1438 DAGMNDYISKPVYLEAIIEALYRFQKTVRKE 1468
>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium HTCC2150]
gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacteraceae
bacterium HTCC2150]
Length = 767
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 44/293 (15%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
LT +E +L A +I KA+A+N KS+FLANMSHE+RTPM +IG+ +++
Sbjct: 221 LTERDEREAELNAAMI-------KADAANKAKSEFLANMSHEIRTPMNGVIGMAQLMLET 273
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D L+++Q I+ S AL+ ++N ILD SK+++GKM L+N FDL++ ++ + S
Sbjct: 274 D-LSDDQNLYANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCSPLMS 332
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
Q + +E VLD S ++P+ GD GRV QI N++ N+IKFT G +
Sbjct: 333 AQALHKGLEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTEKGSV----------- 381
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
EF + + G +++AL + DTG GI Q+K +++F
Sbjct: 382 -----EFAVNGIQSG--------------------DEIALELSIKDTGIGIPQNKLQSIF 416
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
FEQ + + R+ GTGLGL+IV +V+ MGG I V + G++ L + L
Sbjct: 417 VPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSISVESEIGKGSVFILKIAL 469
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 26/160 (16%)
Query: 933 PCSSSNSSS---NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
P + N+ S N+ ++ LR+L+AED QIV +L+K T+ +G AVEA
Sbjct: 621 PKAQDNTKSKPLNENSSIDKLRVLIAEDNRTNQIVIKSMLKKEQMTLKFANNGKLAVEAF 680
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
E PD LILMD MP+MDG AT IR E +
Sbjct: 681 E------------------GEKPD-----LILMDISMPEMDGLSATRAIRNLEGSVEKDH 717
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
PI+ALTA+ M D + CL GM+ YL KP++ ++ I
Sbjct: 718 CPIIALTANVMAGDRETCLNAGMDDYLAKPVNKTALLKLI 757
>gi|347831823|emb|CCD47520.1| M4WV, histidine kinase-group IX protein [Botryotinia fuckeliana]
Length = 1163
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 160/308 (51%), Gaps = 33/308 (10%)
Query: 383 VIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
VIGC+ + I V K +L + + + A+ S+ KSQFLANMSHE+RTP A +I
Sbjct: 569 VIGCLGLSIDITDVEKRAQLEMDNTRLMIEEQAAKDSSKIKSQFLANMSHEMRTPTAGVI 628
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G++++L D LT+ Q V I+ S ALL ++N ILD SK+ESG++++E F+L
Sbjct: 629 GMVDLLDEDPTLTSSQREYVSSIQLSGRALLTIVNDILDFSKIESGRLDIEEVPFNLCSI 688
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRN--VRGDPGRVFQIFSNLINNSIKFTSSGHI 560
+ EL + V + N+ V + + I + V GDPGR+ Q+ SNL+ NS+KFT +G I
Sbjct: 689 VGELCKLLCVFANQKNL--VFNYENEIDESLEVLGDPGRIRQVLSNLLTNSLKFTENGSI 746
Query: 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC 620
I + + S NT N+ + R F + DTG
Sbjct: 747 TINAKGKRITDSGNT---------------------GNDVIEVR--------FVIKDTGI 777
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GI + + +F F QGD ST R +GGTGLGL+I R L M G I + + G+
Sbjct: 778 GISKMTLDKLFRPFSQGDSSTARLYGGTGLGLTISRNLATLMSGTIDLDSEQGVGSTATF 837
Query: 681 YLLLGASS 688
+ L SS
Sbjct: 838 TIPLKISS 845
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 60/181 (33%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ ED + Q +A K + +G + V +G +A+ L+ +
Sbjct: 934 VLVVEDNAINQTIALKTVRNLGFQATAVWNGREALNYLS------------------NPG 975
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATI--------------EIRKSESEHGA---------- 1047
P PR D+ILMD QMP MDGYEAT +I+ SE+ +G
Sbjct: 976 PSNPRPDIILMDVQMPIMDGYEATKILRTSKEYEKNLEPDIQPSENTNGLVSARRSNPNG 1035
Query: 1048 ------------------RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+++P++A+TA A+ D++KCL GM+ YL+KP++ ER+ T+
Sbjct: 1036 SKMESPASRTQTKTKSKLKDLPVIAMTASAIQGDQEKCLEAGMDGYLSKPVEKERLEETL 1095
Query: 1090 L 1090
L
Sbjct: 1096 L 1096
>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1823
Score = 172 bits (437), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 153/263 (58%), Gaps = 19/263 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N KS+FLA MSHE+RTPM A+IG+ +L D LT EQ V I+ S A
Sbjct: 1030 ARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMD-LTPEQRDFVETIRTSGDA 1088
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGKM+LE F+L+ +EE +D+ + + S +E + ++P
Sbjct: 1089 LLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSVPS 1148
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ QI NL+ N++KFT +G I++ T++ +E + ++
Sbjct: 1149 KVLGDVTRLRQILVNLLGNAVKFTEAGEIVVS------VTARKISE-----RHGEELYKL 1197
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L N++ + V DTG GI + + +F++F Q D STTR++GGTGLG
Sbjct: 1198 PLS-------NYQVPVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLG 1250
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + L MGG++ VV K +P
Sbjct: 1251 LAISQRLSEMMGGKMWVVSKAAP 1273
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 30/175 (17%)
Query: 920 RERHQIGSSRRDQPCSSSN-----SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGA 974
+E++ + + P +S+ SSS R LRILLAED + Q VA +LE++G
Sbjct: 1498 KEQYPVNPTNETLPATSNAVRANISSSENGRNGNQLRILLAEDNLVNQKVATHLLERIGY 1557
Query: 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEA 1034
+ +GL+A+EAL + +D++LMD QMP+MDG EA
Sbjct: 1558 RADIAGNGLEALEALRKQF-----------------------YDVVLMDVQMPQMDGLEA 1594
Query: 1035 TIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
T I + E I+A+TA+AM D +KCL GMN Y+TKP+ E + + +
Sbjct: 1595 TRRICQEWPEQ--LRPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANAL 1647
>gi|428212988|ref|YP_007086132.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001369|gb|AFY82212.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 932
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 156/282 (55%), Gaps = 37/282 (13%)
Query: 396 VSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL 454
+ +++ R + LD ARR+AE ++ KS FLANMSHE+RTPM A++G+ +L + L
Sbjct: 252 IGRDITERQRATAELDRARREAEQASIAKSYFLANMSHEIRTPMNAVLGMTGLLL-ETVL 310
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
T EQ + I+ S ALL L++ ILDLSK+E+G+M LE +F+L +EE++D+ + Q
Sbjct: 311 TAEQRDFIETIRTSGDALLTLIDEILDLSKLEAGEMHLEQLDFNLATTVEEIIDLLAPQA 370
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+VE + +N+P +RGD R+ QI +NLI N+IKFT G+++++ +
Sbjct: 371 HLKSVEVASFIEENLPLGLRGDSSRLRQILTNLIGNAIKFTEEGYVVLQ--------VER 422
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
E P + L F V DTG GI +F+ F
Sbjct: 423 VTENP---------------------------QETTLLFSVIDTGIGIAAQNQSQLFQPF 455
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D STTR++GGTGLGL+I + LV M G+I + + G+
Sbjct: 456 SQVDSSTTREYGGTGLGLAICQQLVTLMEGKIGLESREGEGS 497
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 31/154 (20%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P S + N ++ ++ILLAED P+ Q VA K LE +G + G +A++
Sbjct: 655 PASYTKDKINSEQT--SIKILLAEDNPVNQKVAIKQLELLGYQADIANQGEEALKLWQ-- 710
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG------ 1046
T + +ILMDCQMP +DGY+ T +IR+ E G
Sbjct: 711 ---------------------THAYQIILMDCQMPVLDGYQVTAQIRRLEQGTGDFPVRN 749
Query: 1047 ARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
R+ I+A+TAHAM D +KCL GM+ Y++KP+
Sbjct: 750 PRHTVIIAMTAHAMKEDREKCLAAGMDDYISKPV 783
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 151/261 (57%), Gaps = 30/261 (11%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L AR+ AE SN KS FLANMSHE+RTPM ++G+ ++L S L + Q V I+ S
Sbjct: 281 LAARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLLLST-TLDDRQQDFVENIRLSG 339
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+NRILDLSK+E G+++LE+ F+L++ +EE++++F +Q N ++E +++
Sbjct: 340 NLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILELFGLQAHNQSLEINASFEEDL 399
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR + D R QI NLI N+IKFTS G I++R +R R F
Sbjct: 400 PRLLMADTVRFRQIMMNLIGNAIKFTSEGEIVVR----------------IERD---RDF 440
Query: 590 RTK--LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
K L+Q + + + R F V DTG GI S + +F+ F Q D ST R+ GG
Sbjct: 441 ENKKSLEQASPSQIYLR--------FSVIDTGIGIHPSNQDKLFKPFSQVDTSTNRRFGG 492
Query: 648 TGLGLSIVRTLVNKMGGEIKV 668
TGLGL+I R LV M GEI +
Sbjct: 493 TGLGLAISRQLVELMQGEIGI 513
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 29/158 (18%)
Query: 934 CSSSNSSSNQKRI-----LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
SS +S NQ+ L LRILLAED Q V L ++G + +G Q ++
Sbjct: 691 ASSISSRENQEEAILMEKLRSLRILLAEDNITNQKVTLAYLSQLGIQSDLAENGEQVLQ- 749
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES-EHGA 1047
L+Q T +D+ILMDCQMP +DGY+ T IR+ E+
Sbjct: 750 --------------LIQ--------TKSYDIILMDCQMPVLDGYDTTEAIRRLEAINQTP 787
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
+ I I+A+TA+A D +CL +GM+ YL+KPI +++
Sbjct: 788 KPILIIAMTANAFTEDRDRCLAIGMDDYLSKPIRKQQL 825
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
D +L+D ++ +G EA IR+ S+ N+PI+AL + + L G Y+T
Sbjct: 606 DAVLIDWRLTNFNGTEA---IRQIHSKEKFINLPIIALLTANRQGETQTALDQGFCGYVT 662
Query: 1078 KPIDSERMVSTI-LRLTKNMPSEATGTT 1104
KP +R++ + L L N+P+ + TT
Sbjct: 663 KPFKKQRLLKALFLALGLNIPNPSIPTT 690
>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 1670
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 171/322 (53%), Gaps = 47/322 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AEA+ KS+FLANMSHE+RTPM +IIG +++S D L + Q + ++ S+ +
Sbjct: 930 ARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSAD-LDSAQREYLNKMMSSADS 988
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++ ILD SK+E+GK LE EF L LE++ +M SV+ + ++ +L + ++P
Sbjct: 989 LLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGIDFILSVGPDVPL 1048
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGDP R+ Q+ +NL+NN++KFT G + + CE T + + +F
Sbjct: 1049 FLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEASIKFI------------ 1096
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
V D+G G+ + +F SF Q D STTRK+GGTGLG
Sbjct: 1097 -----------------------VRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLG 1133
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I R+LV MGG + V ++ PG Y + S+ D ++ V+ A M
Sbjct: 1134 LAIARSLVELMGGTVSV--ESHPGEGSSFYFTVKMSA-------MDRGSSFVLPAGKAGM 1184
Query: 712 ERMIISQWLRKKKV--STLETS 731
+ ++I + ++ ST+E S
Sbjct: 1185 KSLVIEGNMMAREFIRSTMEKS 1206
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 26/141 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED L Q VA ++LE +G V V +G +A+EAL
Sbjct: 1333 KILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEAL--------------------- 1371
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
++ + L++MD QMP+MDG A+ IR E RN+PI+A+TAHAM D +K
Sbjct: 1372 --ESEPYSLVIMDIQMPEMDGLTASRIIRSDER---YRNLPILAMTAHAMPGDREKSFEA 1426
Query: 1071 GMNAYLTKPIDSERMVSTILR 1091
GMN +LTKPID E + +++
Sbjct: 1427 GMNEHLTKPIDPEELKRALVK 1447
>gi|407802993|ref|ZP_11149832.1| MmoS protein [Alcanivorax sp. W11-5]
gi|407023153|gb|EKE34901.1| MmoS protein [Alcanivorax sp. W11-5]
Length = 767
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 167/305 (54%), Gaps = 45/305 (14%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE++N KS+FLA MSHE+RTPM +IG+L++L D L Q + ++ SS LL
Sbjct: 262 RAESANQAKSEFLATMSHEIRTPMNGVIGILDLLAGTD-LDERQRHYLQLMQHSSENLLT 320
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
+LN +LD S++E+ ++ LE+ DLQ +E+ V FS +E VLDL R+VR
Sbjct: 321 ILNDVLDYSRIEAEQLLLEHIPMDLQVLVEDAVSAFSGIARQQALELVLDLRLQAMRHVR 380
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDP R+ Q+ NLINN++KFT +GH++IR
Sbjct: 381 GDPTRIRQVLLNLINNALKFTPAGHVLIR------------------------------- 409
Query: 595 QQANNAMNFREDNKLA-LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+ED +L+ + F+V+D+G GI + +T+F+ F Q D ST+R+ GGTGLGL+
Sbjct: 410 --------VQEDPELSRVRFDVEDSGIGIAEQHLDTIFQPFTQADHSTSRRFGGTGLGLA 461
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT--VVVLATVGSM 711
+ + LV M G I + G+ + L ++E Q+ + P V+VL+T+ +
Sbjct: 462 LCKRLVQAMQGTIIAHSRAGHGSCFSFTVPLEINAE--QVSHSRPPTDGHVLVLSTLQPL 519
Query: 712 ERMII 716
++ ++
Sbjct: 520 QQALL 524
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+LMDC+MP MDGY AT EIR E + +P+VALTAH M ++ GM+ +L
Sbjct: 675 FDLVLMDCEMPVMDGYIATAEIRAIEEQAALPPVPVVALTAHVMEPQRQRMRDAGMSHFL 734
Query: 1077 TKPI--DSERMVSTILRLTKNM 1096
+KP+ D+ R + L L K +
Sbjct: 735 SKPVRKDAVRKLLAELGLEKTL 756
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 38/299 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+ +AEA++ KSQFLA +SHE+RTPM ++G+L+ +L +D +T + Y+ Q+ A
Sbjct: 351 KTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQM--CGRA 408
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK+ELE FDL+ +++++ +FS + +E + + DN+P+
Sbjct: 409 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPK 468
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR--------------------GWCENLDT 571
+V GDP R QI +NL+ N++KFT GH+ +R G +D+
Sbjct: 469 DVLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDS 528
Query: 572 SKNTAEFPT-------DRKKFGRAFRTKLKQQANNAMNFR-------EDNKLALCFEVDD 617
+ N A F T DR+ + F+ L + + + + + + L ++D
Sbjct: 529 TTNGA-FNTLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIED 587
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TG GI + VF F Q D ST+R +GGTG+GLSI + L MGG+I V + G+
Sbjct: 588 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGS 646
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 42/180 (23%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
RRD + N S + +L G IL+ +D + VA L+K GA VS V G A+
Sbjct: 813 RRD----NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-- 866
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE------ 1042
SLLQ P FD MD QMP+MDG+EAT +IR++E
Sbjct: 867 -------------SLLQ--PPHC-----FDACFMDVQMPEMDGFEATRQIRQTEMRVNEE 906
Query: 1043 ----------SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
S ++P++A+TA + A +KC+ GM+ Y++KP D E++ + RL
Sbjct: 907 RKNKLVLIEGSTFVEYHLPVLAMTADVIQATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1564
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 159/285 (55%), Gaps = 20/285 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ A+A+N KS+FLA MSHE+RTPM A+IG+ +L + L N+Q V I+ S A
Sbjct: 1019 ARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLL-NTTLDNQQRDFVETIRSSGDA 1077
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+GK+E E F L+ +EE + + + + + +E + P
Sbjct: 1078 LLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPN 1137
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL-DTSKNTAEFPTDRKKFGRAFR 590
++ GD R+ QI NL+ N +KFT G ++I + +++ DT E + RK F
Sbjct: 1138 HIVGDVTRLRQILVNLLTNGVKFTEQGEVVI--YVQDITDTDITQPETTSQRKNF----- 1190
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T ++ Q + + FEV D+G GI + + +F+SF Q D STT+K+GGTGL
Sbjct: 1191 TDIQNQ-----------RRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGL 1239
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
GL+I R+L MGG I V K G+ + + + E + D
Sbjct: 1240 GLAICRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGENTLD 1284
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 25/142 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q VA IL+++G V +G + +EAL+R
Sbjct: 1436 LQILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLEALHRQ----------------- 1478
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QMP+MDG A I + E I+ALTA+AM D + C+
Sbjct: 1479 ------SYDVVLMDVQMPEMDGLTAARHITEQWQEE--EQPYIIALTANAMQGDREMCMA 1530
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GM+ Y++KPI + + S R
Sbjct: 1531 AGMHDYVSKPIRVDELKSAFER 1552
Score = 45.1 bits (105), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N+ +++L+G ++L+ +D P + + + G + V G +A+ +L ++S
Sbjct: 1281 NTLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALA----LLESDS 1336
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1057
+FDL ++D QMP+MDG E IR+ + +++P+V L++
Sbjct: 1337 ------------------KFDLAILDMQMPEMDGVELARHIRQLDQR---KHLPLVMLSS 1375
Query: 1058 HAMNADEKKCLGVGMNAYLTKPI 1080
+ K + +A L KPI
Sbjct: 1376 LGQDEIIKHKQEIQFSAILNKPI 1398
>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 1567
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 36/284 (12%)
Query: 396 VSKEMKLRAEL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E + R EL + A+R+AEA+N KS+FLA MSHE+RTPM A+IG+ E+L
Sbjct: 859 LEQETRQREELTLKNFALQQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTELLLDT 918
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D LT +Q V + S ALL ++N ILD SK+ESG++ELE FDL+ +E+++D+ +
Sbjct: 919 D-LTPQQRDFVETVHTSGDALLTIINDILDFSKIESGRLELEEKPFDLKACVEQVIDLLA 977
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ + +E + + +P + GD R+ Q+ NL+NN+IKFT G +++ + +L+T
Sbjct: 978 PKAAQKQIELIYLIHPQVPTQIIGDITRLRQVLMNLLNNAIKFTQQGEVVLSVYANHLET 1037
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
D + F + DTG GI K +F
Sbjct: 1038 QN-------------------------------LDTSCKILFSIQDTGIGITPEKMARLF 1066
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ F Q D S TR +GGTGLGL I + L M G + V + G
Sbjct: 1067 QPFAQADASMTRLYGGTGLGLVISQRLSEMMNGSLWVESRGCIG 1110
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 25/150 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED+ + Q VA +L+K+G V VV DG + ++AL Q P
Sbjct: 1306 LRILVAEDSLVNQKVALLMLQKIGYQVDVVGDGREVIQAL---------------QHQP- 1349
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD MP+MDG E T +I + E R I+A+TA+AM D + CL
Sbjct: 1350 -------YDVVLMDIHMPEMDGLE-TSQIISQQWEASTRPY-IIAITANAMRGDREACLA 1400
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
GM+ Y++KPI +V + + +P++
Sbjct: 1401 AGMDDYISKPIQMAELVKALRKCQPFIPTK 1430
>gi|428320948|ref|YP_007118830.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428244628|gb|AFZ10414.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 955
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/538 (26%), Positives = 239/538 (44%), Gaps = 67/538 (12%)
Query: 201 GVASWH-VAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHS 259
G +W V VS + L+SA PV+ + + V+ L +G+ + L S
Sbjct: 178 GKPTWSSVFVSLLEPTLLISALQPVY---SEKNQLEGVLFTALRLDHLGRFLNSLKVGKS 234
Query: 260 GHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPG 319
G ++ ++G LLATST L K +S NP Q A++L + + K+
Sbjct: 235 GQTFIIDRQGTLLATSTAETPFRTKGNKKLLFKVTESSNPFTQATAKYLTANF-KKLDQI 293
Query: 320 HVIHVQNAKLGHKQYYMDTF-FLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISAS 378
+ + ++ K+ ++ F + K L + V+++P + D +++ +A
Sbjct: 294 KKSELLSFEIDDKRQFLKVLPFQDGKGLDWLIVVVVPEADFTKEIDANTRTAVLLCFAAL 353
Query: 379 VCILVIGCICILILTNGV------------------------------------------ 396
+ IG +TN +
Sbjct: 354 GVAVAIGIQTSQWVTNPILSLNTAAKNIAKGEWDKTVESERSDELGELAKSFNSMAQQLQ 413
Query: 397 ----SKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
+ E +++ A+ KAE +N KS FLANMSHELR+P+ AI+G +++
Sbjct: 414 QSFETLEQRVQERTAELAVAKDKAEVANQAKSTFLANMSHELRSPLNAILGFSQLMTRSQ 473
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
L+ E + I+ S LL L+N +LDLSK+ESG+ L + DL + L +L DMF +
Sbjct: 474 TLSPEHQENISIIRSSGEHLLTLINNVLDLSKIESGRTTLNPHKIDLYRLLNDLEDMFQL 533
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ + ++ V D S ++P+ + D ++ QI NL+NNS+KFT G + +R ++L +
Sbjct: 534 KAHDKQLQLVFDRSPDVPQYIETDELKLRQILINLLNNSLKFTHEGGVAVRVSKQSLGRN 593
Query: 573 KN-------TAEFP--TDRKKFGRAFRTKLKQQANNAMNFREDNKLA-----LCFEVDDT 618
+ +E P T+ +++ Q N + D+ + L FEV+DT
Sbjct: 594 QQPEGGNFEPSEVPKSTENSAINDIKISQICQSNNQIIATPNDDAASTSSFFLHFEVEDT 653
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G GI ++ + +FE F Q + GTGLGL I R V MGGE+ V GT
Sbjct: 654 GPGIATNELDDIFEPFVQTKTGKDSQE-GTGLGLPISRQFVELMGGEMSVCSAVGKGT 710
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D L + + KIL +G + +G +A+E
Sbjct: 746 RILIVDDKQLNRQLLIKILSPLGFELKEATNGQEAIEIW--------------------- 784
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D+ LI MD +MP MDGYEAT I+++ I+ALTA + + L
Sbjct: 785 --DSWEPHLIWMDMRMPVMDGYEATQYIKRTIKGQAT---AIIALTASVLEEERAVILSA 839
Query: 1071 GMNAYLTKPI 1080
G +A+L KP
Sbjct: 840 GCDAFLRKPF 849
>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
Length = 837
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 151/283 (53%), Gaps = 39/283 (13%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+ A+A+N K QFLANMSHE+RTPM IIG+ E+L + +L +Q+ + IK S+ L
Sbjct: 164 KESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLL-ETELAPQQHEYLQMIKTSADCL 222
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
+ ++N ILD SK+E+GK+E+E+ F L++ L +L+ + + +E V + ++P
Sbjct: 223 VSVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWR 282
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ GDPGR+ QI NL+ N+IKFT G I++R ++D T
Sbjct: 283 MTGDPGRLRQILVNLVGNAIKFTEHGEIVVR---VDIDEISETDAL-------------- 325
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L F V DTG GI ++ + +F +FEQ D +TTRK GGTGLGL
Sbjct: 326 ------------------LHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGL 367
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
SI LV M G+I V + G+ LG + S YD
Sbjct: 368 SICSRLVELMHGKIWVESQVHVGSQFHFTAQLGIDANS---YD 407
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 87/155 (56%), Gaps = 24/155 (15%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
++ N+ + K G RILLAED + Q +A +LEK G V+V DG QAVEA
Sbjct: 549 ATQNAGAEPKLGSWGRRILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAWK---- 604
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
+G FDL+LMD QMP +DG AT EIR+ E+ R IPI+A
Sbjct: 605 ----------EGG---------FDLVLMDVQMPILDGMAATTEIRRHETRTALR-IPIIA 644
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+TAHAM D ++CL GM+ Y+TKPI+++ + I
Sbjct: 645 MTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAI 679
Score = 40.4 bits (93), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
+E +P+F L+++D QMP ++G E I+KS A++I LT + + L
Sbjct: 459 AEEVTSPKFQLLIIDQQMPVLEGTELLERIQKSPRGAAAKSI---LLTTGTFDKEPTNPL 515
Query: 1069 GVGMNAYLTKPIDSERMVSTIL 1090
++A L+KPI + T++
Sbjct: 516 QARVDAILSKPIKQSDLFDTLM 537
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 38/299 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+ +AEA++ KSQFLA +SHE+RTPM ++G+L+ +L +D +T + Y+ Q+ A
Sbjct: 351 KTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQM--CGRA 408
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK+ELE FDL+ +++++ +FS + +E + + DN+P+
Sbjct: 409 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPK 468
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR--------------------GWCENLDT 571
+V GDP R QI +NL+ N++KFT GH+ +R G +D+
Sbjct: 469 DVLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDS 528
Query: 572 SKNTAEFPT-------DRKKFGRAFRTKLKQQANNAMNFR-------EDNKLALCFEVDD 617
+ N A F T DR+ + F+ L + + + + + + L ++D
Sbjct: 529 TTNGA-FNTLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIED 587
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TG GI + VF F Q D ST+R +GGTG+GLSI + L MGG+I V + G+
Sbjct: 588 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGS 646
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 38/171 (22%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S + +L G IL+ +D + VA L+K GA VS V G A+
Sbjct: 818 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI----------- 866
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------------- 1042
SLLQ P FD MD QMP+MDG+EAT +IR++E
Sbjct: 867 ----SLLQ--PPHC-----FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIE 915
Query: 1043 -SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
S ++P++A+TA + A +KC+ GM+ Y++KP D E++ + RL
Sbjct: 916 GSTFVEYHLPVLAMTADVIQATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 220/456 (48%), Gaps = 79/456 (17%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
K AEL+ A+ AEA++ KS+FLA MSHE+RTPM I+G+ E+L QL +Q
Sbjct: 250 KRTAELVL---AKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQT-QLNRDQQR 305
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
++ S LL ++N ILD SK+ES MELE+ +FDL + +E+ + MF+ +E
Sbjct: 306 FAETVQSSGRHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLE 365
Query: 521 TVLDLSDNIPRN----VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
IP N VRGD R+ QIF+NLI+N+IKFTS G ++IR
Sbjct: 366 LAAQF---IPPNRAFMVRGDSFRLRQIFANLISNAIKFTSQGEVVIR------------- 409
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
T+L + A + +N R +C V+DTG GI + +F+ F Q
Sbjct: 410 --------------TQLCEAAGSRVNLR------IC--VEDTGIGIPPEYHKKIFQQFSQ 447
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
D STTR++GGTGLGL+I + L+ MGG I + GT Q+ L L E + A
Sbjct: 448 ADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLEL----EKSALEHA 503
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFD 756
PN + + + +++ +++ L+ W I V ++ D
Sbjct: 504 HQPN----ITDLAGIRILVVDDNQTNREILRLQLQNW------------KIQAVCTHSAD 547
Query: 757 APYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVV 816
+ MT + +P ++V++D+ + + +++++ ++ +
Sbjct: 548 HALFA-------MTKACNINEPYHLVILDMHMPKMDGLQLAKKIHADPTLNKTRIMMLTS 600
Query: 817 NHQTTSPIKTELSREGQNIV--VTKPLYKGKMIQLL 850
H T+L+++ I+ V KP+ + ++I ++
Sbjct: 601 THHDV----TQLAKDNAGILRYVNKPVRQKELIDII 632
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 28/140 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LLAED P+ Q VA +L ++G + DG QAV+ +
Sbjct: 662 VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRNH------------------- 702
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+D+ILMDCQMP MDG+EAT +IR+ ++ IPI+ALTA+A D +CL G
Sbjct: 703 ----HYDIILMDCQMPVMDGFEATAQIRQHLNK-----IPIIALTANATEDDRTQCLNAG 753
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ +L+KP +++ IL+
Sbjct: 754 MDDFLSKPYTLDQLQQKILQ 773
>gi|343493983|ref|ZP_08732267.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
27043]
gi|342825624|gb|EGU60101.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
27043]
Length = 931
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 152/277 (54%), Gaps = 38/277 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ +L++ Q + I++S+
Sbjct: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--RLSSSQQDYLQTIERSAN 337
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD Q+ LEE+ + + +E L + IP
Sbjct: 338 NLLSIINDILDFSKLEAGKLALENIPFDFQECLEEVASLQATSAHEKGLELTLKIDPKIP 397
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NL+ NSIKFT G+I I + E T ++ F
Sbjct: 398 AGVVGDPLRIQQVLTNLVGNSIKFTERGNIDI------------SVELRTQKEDF----- 440
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 441 ------------------IELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GL I + LV +MGGE+ + + G+ L L S
Sbjct: 483 GLVITQKLVGQMGGEVSLTSRLHQGSTFWFTLRLATS 519
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FD+ILMD QMPKMDG A E++ ++ + P++A+TAHAM + + L GM+ YL
Sbjct: 712 FDMILMDIQMPKMDGVTACQEVKNTKLN---SHTPVIAVTAHAMVGERDRLLKAGMDDYL 768
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 769 TKPIE-EHILQQVL 781
>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 988
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 149/267 (55%), Gaps = 39/267 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS- 469
+A+R AE+SN KS+FLANMSHE+RTP+ I+G+L++L+S D T+ + S I SS
Sbjct: 589 NAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLESTD--TDHEQSEYIDIALSSC 646
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
L RL++ ILDLS++E G + LEN F++ EE+++ F + S+ +E + NI
Sbjct: 647 RNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITELSSKEIELSTSIEKNI 706
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P V GD GR+ QI N+ NSIKFTSSG I I N+D
Sbjct: 707 PEIVYGDSGRLRQIIFNIFGNSIKFTSSGRIFI-----NID------------------- 742
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ +++Q + L EV DTG GI + K + +F F Q D S TRK+GG G
Sbjct: 743 -SLIQRQT-----------IYLFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVG 790
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGLSIV+ L+ MGG I V GT
Sbjct: 791 LGLSIVKKLLIAMGGTITVESNIDKGT 817
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 25/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED P+ Q+ ++K+G V D +A+E L
Sbjct: 850 LKILIAEDDPINQLTTSSFIKKIGHFSKCVNDEKEAIEILK------------------- 890
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ FDLILMD QMP +DG E T+ IR S IPI+A+TAHAM+ D + L
Sbjct: 891 ----SEHFDLILMDIQMPNLDGVETTLVIRNSNEIFSK--IPIIAITAHAMDGDREFFLQ 944
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GMN YL+KP+ E + + I
Sbjct: 945 SGMNGYLSKPLIIEDLNNVI 964
>gi|366163023|ref|ZP_09462778.1| chemotaxis CheB/CheR fusion protein [Acetivibrio cellulolyticus
CD2]
Length = 822
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 151/274 (55%), Gaps = 39/274 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
++ +AEA+N KSQFLANMSHE+RTP+ ++G++++ L SD L NEQ + K
Sbjct: 330 SKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDLTLMSD--LNNEQRDNLETAKSCVD 387
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL+L+N ILD SK+E+GK+EL N+ F L+ LE+ V + ++ HNV +S ++P
Sbjct: 388 SLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDLP 447
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GD R+ Q+ +NL++N++KFT +G I NL NT
Sbjct: 448 EYIIGDQLRIKQVLNNLLSNALKFTEAGSI-------NLKVDINTI-------------- 486
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
DN + FEV DTG GI E +F+SF Q D S TRK+ GTGL
Sbjct: 487 ---------------DNDEFILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGTGL 531
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
GL+I + L+ KMGG I + + G+ + L
Sbjct: 532 GLAISKRLIEKMGGSIWIKSEKGIGSTFSFTIKL 565
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 38/159 (23%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL+ +D + Q V +L G V + +G +A+ ++
Sbjct: 588 LDILVVDDDKINQTVIEGMLRGFGHRVKIANNGFEAINCVSE------------------ 629
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------------SEHGARNIPIVAL 1055
FDL+LMD QMP+MDG AT IR+SE EH R +PIVAL
Sbjct: 630 -----KNFDLVLMDIQMPEMDGVTATKYIRESELKKNNYISKEELTSEEHNFR-LPIVAL 683
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
TAHA+ D++K L GM+AY++KP+ + +TI ++ K
Sbjct: 684 TAHALQGDKEKFLAFGMDAYISKPVIISELFNTIEQIIK 722
>gi|381158345|ref|ZP_09867578.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380879703|gb|EIC21794.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1274
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 45/351 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL---KSDDQLTNEQYSTVCQIKKSSYA 471
+A+++N KS+FLANMSHE+RTPM +IG+ +L DDQ QY+ + I+ S +
Sbjct: 547 QADSANRAKSEFLANMSHEIRTPMNGVIGMTSLLLETPMDDQ--QRQYAEI--IRSSGES 602
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+G++ELE +FDL+ L++L +++ ++E + +P
Sbjct: 603 LLGVINDILDFSKIEAGRLELEAIDFDLRNVLDDLAASLALRAHEKSLEFICAADAGVPA 662
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGD R+ QI +NL N+IKFT G + +R
Sbjct: 663 QLRGDASRLRQILTNLAGNAIKFTEVGEVSVR---------------------------V 695
Query: 592 KLKQQANNAMNFREDN---KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
L +Q +++ ED+ ++ L F V DTG GI K + +F+ F Q D S+TR+ GGT
Sbjct: 696 HLAEQQPASVDSLEDSAPTRVRLHFRVADTGIGIPPDKRDRLFQKFSQVDASSTRRFGGT 755
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP--------N 700
GLGL+I R L MGGEI V + G+ L L E + D P
Sbjct: 756 GLGLAISRQLTELMGGEIGVDSQPGQGSTFWFELELERLPEDADASNRDAPAQPAPDLSG 815
Query: 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVS 751
V++ + R ++ + + ++ ++T+E ++L + LD P +
Sbjct: 816 KRVLIVDDNATNRQVLRGRMLEWRLRPVDTAEATDALRLLYQALDDDDPFA 866
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 79/144 (54%), Gaps = 23/144 (15%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ +RILLAED + Q VA +L+++G VV +G +A+ AL + A
Sbjct: 1001 QSVRILLAEDNQINQQVALGLLKRLGIEADVVTNGEEALAALRQHPYA------------ 1048
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
L+LMD QMP MDG EAT IR E+ +IPI+ALTAHAM D ++C
Sbjct: 1049 -----------LVLMDVQMPVMDGLEATRCIRTREAGTVNPDIPIIALTAHAMAGDRQRC 1097
Query: 1068 LGVGMNAYLTKPIDSERMVSTILR 1091
L GMN YL KP+ +E + + I R
Sbjct: 1098 LQAGMNDYLPKPLAAEAVDAVIKR 1121
>gi|339484610|ref|YP_004696396.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806755|gb|AEJ02997.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 1346
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 149/267 (55%), Gaps = 35/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+ AR++AEA++ K++FLA MSHE+RTPM A++G+ +L S L ++Q + + I+ SS
Sbjct: 813 IQARQQAEAASIAKTRFLAMMSHEIRTPMNAVLGMAYLL-SKTSLDSQQNAYLRNIEGSS 871
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD SK+E+ K+EL+N FDL LE L M S+ + ++ ++ ++ ++
Sbjct: 872 NILLGVINDILDYSKIEANKIELDNIPFDLNSILENLSAMASIAAKDKAIDVLIYVAPDV 931
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR+ GDP R+ QIF NL NN+IKFT G +IIR EN + S+
Sbjct: 932 PRHFTGDPLRLSQIFVNLTNNAIKFTDQGEVIIRITIENTEDSETA-------------- 977
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V D+G G+ + E +F++F Q D S TR+ GGTG
Sbjct: 978 --------------------ILAFSVTDSGIGMTSEQMEGLFKAFSQADSSITRRFGGTG 1017
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGLSI L +M G+I + G+
Sbjct: 1018 LGLSISHRLAQQMSGDIVAESQYGKGS 1044
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 31/180 (17%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D + +F E + + DQ SS ++ G IL+ ED + QI+ ++L +
Sbjct: 1188 DTVAALFSET----AGKADQ----KQGSSAIRKQFAGAHILVTEDNEVNQILISELLSNL 1239
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
G TVS+ +G++ ++ L T D+ FDLI MD QMP+M+G
Sbjct: 1240 GMTVSLARNGIECLDLL--------------------RTSDSHPFDLIFMDIQMPEMEGL 1279
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
EA IR+ + +IPI+ALTA+ D+ + + GMN +L KP D E++ + R
Sbjct: 1280 EAIRHIRQ---DLHLTDIPIIALTANTKEHDQHEFMKAGMNDFLPKPFDPEQLYQILYRF 1336
>gi|404448563|ref|ZP_11013556.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
gi|403766184|gb|EJZ27059.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
Length = 1077
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 37/307 (12%)
Query: 400 MKLRAELI-SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
+K R EL S + A+ +AEA+N KS+FLANMSHE+RTP+ +IG ++L + D L NEQ
Sbjct: 423 VKKRTELERSLIKAKEEAEAANRSKSEFLANMSHEIRTPLNGVIGFTDLLINTD-LNNEQ 481
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
V S+++LL ++N ILD SK+E+GK+ELE E DL + E+ D+ + N
Sbjct: 482 LQYVTSANTSAHSLLGIINDILDFSKIEAGKLELEEVETDLIELAEQTADIVKYNTAKKN 541
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E +L++ +IPR + D R+ QI NL++N+IKFT G + + N
Sbjct: 542 IEFLLNIQVDIPRYIIVDQIRLKQILVNLLSNAIKFTEKGEVEL-----------NIGYE 590
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
P D K+ G+ F V DTG GI + + + +F+SF Q D
Sbjct: 591 PVDEKE-GK-----------------------FTFTVKDTGIGISEEQKQKLFKSFSQAD 626
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
STTRK GGTGLGL I + L KM +I + + G+ L ++S+ +F
Sbjct: 627 SSTTRKFGGTGLGLVISQMLAEKMDSQIVLESELGKGSSFSFSLQKAFKTKSEHQAQTEF 686
Query: 699 PNTVVVL 705
N VL
Sbjct: 687 TNIKKVL 693
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 22/138 (15%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
++IL+AED L ++ ++ + P+ + +EA N A ++
Sbjct: 838 AMKILIAEDVSLNMLLLKTVIR------NYYPEA-KIIEAQNGQEAITQYKK-------- 882
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
E PD LI MD QMP DG+EAT EIR+ E++ +R +PIVALTA A+ ++ + C+
Sbjct: 883 -ENPD-----LIFMDVQMPVKDGFEATREIRELETKTKSR-VPIVALTAGALQSERENCM 935
Query: 1069 GVGMNAYLTKPIDSERMV 1086
GM+ +LTKPI+ E+++
Sbjct: 936 NAGMDHFLTKPIEKEKLL 953
>gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
Length = 603
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 184/330 (55%), Gaps = 25/330 (7%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N +++ + A+ + + +R A+ +N KS FLANMSHE+RTPM IIG++E+L SD
Sbjct: 161 NILAQFATMAADALKLQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEML-SDTM 219
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ EQ + IK S+ LL ++N ILDLSKVE+GKM +++ +L E+V +F+++
Sbjct: 220 LSVEQREYIENIKVSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIK 279
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ ++++ V+GDP R+ Q+ NL+NN+IKFT G + +D K
Sbjct: 280 ARQRGLVLDYHYTESLSPYVKGDPVRLKQVMVNLVNNAIKFTREGGRV------TIDV-K 332
Query: 574 NTAEFPT-DRKKFGRAFRTKLKQQANNAMNFREDNK--------LALCFEVDDTGCGIDQ 624
+ + P D K A K ++ ++F D+K + LC EV DTG GI
Sbjct: 333 HMQDNPCLDNKDCDHA-----KGNNDSRLDFAIDDKNSTTIHQEMTLCIEVTDTGVGIKS 387
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
E +F++++Q + T R +GGTGLGLS+ ++LV MGG I+V GT ++ L L
Sbjct: 388 ESLEAIFDAYDQANKYTHRLYGGTGLGLSVCKSLVELMGGYIEVDSVVGIGTTFRVLLPL 447
Query: 685 GA-SSESKQIY--DADFPNTVVVLATVGSM 711
++E +I+ D DF T+ VG +
Sbjct: 448 PCIAAEDYEIWQTDNDFTITLPSDELVGHI 477
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 23/135 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
ILL ED + ++A K L G TV+ V DG QA+E +
Sbjct: 476 HILLVEDDSVNAMIAKKALNNGGHTVTHVNDGQQAIEIF-------------------AL 516
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P+ R+D+ILMD MP MDG +ATI++ + + PI+ALTA+AM+ + KK L V
Sbjct: 517 YPE--RYDVILMDHHMPIMDGVQATIKLHELYAPQDLP--PIIALTANAMDGERKKYLDV 572
Query: 1071 GMNAYLTKPIDSERM 1085
GM Y TKP E++
Sbjct: 573 GMQDYCTKPFKQEQL 587
>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
Length = 1223
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 173/325 (53%), Gaps = 42/325 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N+ KS FLANMSHE+RTPM AIIG+ + LK+D LT Q + + ++K SS LL L+N
Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTD--LTKAQRNYIHKVKLSSDTLLGLIND 534
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+GK+++E +F L+ L+ + ++ ++ S+ +E ++ + ++P N+ GDP
Sbjct: 535 ILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPL 594
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI NL NN++KFT G + I S + AE
Sbjct: 595 RLGQILINLSNNAVKFTEKGEVKI---------SISVAE--------------------- 624
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
R+ + + L F V D+G G+ Q + +F F Q D STTRK+GGTGLGL+I + L
Sbjct: 625 -----RQGDDIKLNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKEL 679
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ---IYDADFPNTVVVLATVGSMERMI 715
MGG+I V + G+ + S +Q + A N V++ S R+I
Sbjct: 680 SQLMGGDIHVSTELGKGSTFSFTIATRVSHSIQQHRVVVPASINNLKVLVVDDNSSARLI 739
Query: 716 ISQWLRKKKVS-TLETSEWHGLTQI 739
+ L K++ TL +S L ++
Sbjct: 740 VGDILESLKLTPTLSSSVDEALIEL 764
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ILL ED + Q +A ++LE V++ +G QA++ + +
Sbjct: 873 LAGANILLVEDNEINQELATELLEGQQIKVTIAENGQQAIDLYQQAI------------- 919
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
T D P FD ILMDCQMP MDGYEAT+ IR + PI+A+TA+ M D++K
Sbjct: 920 ----TDDVP-FDGILMDCQMPVMDGYEATLHIRNKIKD---TQTPIIAMTANVMERDKEK 971
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
L GM + KPID M +T+
Sbjct: 972 ALNCGMTDIIAKPIDVGSMFATL 994
>gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 183/336 (54%), Gaps = 48/336 (14%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I++SV +L+I + I +S+ K+ + +D + AEA++ KSQFLA +SHE+
Sbjct: 591 INSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHEI 650
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L ++Q +S L+ L+N++LD +K+ESG +ELE+
Sbjct: 651 RTPMNGVLGMLKLLM-DTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ ++++V FS++ + +E + +SD +P V GD GR QI ++L+ NS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 555 T-SSGHIII--------RGWCENLD------------TSKNTAE----FPT--------D 581
T + GHI++ RG + +D TS N+ P D
Sbjct: 770 THNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLA-LCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
KKFGR + E++K+ + V+DTG GI Q+ +F F Q D S
Sbjct: 830 FKKFGRT-------------DVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSS 876
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
T+R +GGTG+GLSI + LV+ M GEI V + G+
Sbjct: 877 TSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGS 912
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 41/195 (21%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D + + FRE G +R+Q S+ + +L+ IL+ +D + VA L+K
Sbjct: 1068 DALVSCFRE--AFGIEKRNQVIIKKPST--LRNLLKEKHILVVDDNAVNIRVAEGALKKY 1123
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
GA V+ V G AV LN P FD MD QMP+MDGY
Sbjct: 1124 GAIVTCVKCGKDAVALLN-----------------PPHN-----FDACFMDLQMPEMDGY 1161
Query: 1033 EATIEIRKSESEHGAR---------------NIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
EAT ++R E A+ + PI A+TA + ++CL GM+ Y+
Sbjct: 1162 EATRQVRAVECGVNAKITSGEVSIENNKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVA 1221
Query: 1078 KPIDSERMVSTILRL 1092
KP + E++ S + R
Sbjct: 1222 KPFEEEQLYSAVARF 1236
>gi|384081839|ref|ZP_09993014.1| Hpt sensor hybrid histidine kinase [gamma proteobacterium HIMB30]
Length = 733
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 174/354 (49%), Gaps = 50/354 (14%)
Query: 399 EMKLRAELISHLDARRKAEASN-NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
E KLR L + L+ +R A N+KS+FLANMSHE+RTP+ +IG+ EILK D L E
Sbjct: 199 ESKLRQNLAAELEKQRIAAIEQANFKSEFLANMSHEIRTPLNGVIGIAEILK-DTGLNEE 257
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + S+ LLR++N ILD+SK+E+G+M E F L+ EL + D S++
Sbjct: 258 QLGYTETLLGSAENLLRIINDILDVSKIEAGQMTYEEVPFCLKSELAKTADNLSIKAHEK 317
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
N+E +L++ + P V GDP R+ QI N+ NS+KFT +G + I
Sbjct: 318 NIEIILEIDPDFPSKVIGDPVRISQILYNIAGNSVKFTETGFVQI--------------- 362
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
KL+ + + + V DTG G+D+ +T+FE F Q
Sbjct: 363 --------------KLENPSQDLIRIS----------VIDTGIGMDEEGVKTLFEKFSQA 398
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL------GASSESK 691
D S TR+ GGTGLG++IV+ LV G+I V GT + L L AS +
Sbjct: 399 DTSITRRFGGTGLGMAIVKNLVEAFNGKIDVSSVLGQGTTTSIELKLQCIEDQDASQSTG 458
Query: 692 QIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLD 745
+ +++ + R II + L + + +E G T+ L E+ D
Sbjct: 459 ANGELQIAGKCILVVDDIELNRTIIKRPLLRAGATVVEAV---GATEALEEIND 509
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 31/176 (17%)
Query: 918 MFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGA-TV 976
MF + +G P S S + + GL+IL+AED Q+V K+L+K+G
Sbjct: 585 MFGDVSNLG------PASRSAGRTEPEGDFAGLKILVAEDNSTNQLVIRKVLQKLGCLDF 638
Query: 977 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
++V +G +AVE + ++LMD QMP M G EAT+
Sbjct: 639 TIVNNGAEAVEFIQ----------------------SCDDLSIVLMDIQMPVMSGLEATL 676
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
IR E + +P++ALTA+A+ D++ L G + Y++KP+ ++V+ + RL
Sbjct: 677 MIR--EMKGPKSGLPVIALTANAVEGDKENYLSQGFSGYVSKPLRRAQLVTEVSRL 730
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 27/160 (16%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
DQ S S ++ + +I G IL+ +D L + + + L + GATV + + A EAL
Sbjct: 449 EDQDASQSTGANGELQI-AGKCILVVDDIELNRTIIKRPLLRAGATVV---EAVGATEAL 504
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ ES + DL++ D MP++ G + EIR +
Sbjct: 505 EEINDLESKKVH---------------LDLVITDLNMPELSGLDLCREIRNKKI-----T 544
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+PI+ L++ + DE K L V L+KP+ +R+ S +
Sbjct: 545 VPIIMLSSSGL-TDEMKALDV--TRMLSKPVKEDRLKSVV 581
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 152/284 (53%), Gaps = 36/284 (12%)
Query: 396 VSKEMKLRAEL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E + R EL + A+R AEA+N KS+FLA MSHE+RTPM A+IG+ E+L +
Sbjct: 984 LEQETRQREELTVKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTELL-LN 1042
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
+LT +Q V + SS ALL ++N ILD SK+ESGK+ELE FDL+ +E+++D+ +
Sbjct: 1043 TELTTQQRDFVETVLTSSEALLTIINDILDFSKIESGKLELEAQPFDLRTCVEQVIDLLA 1102
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ ++ ++E + +P + GD R+ QI NL+NN+IKFT G +I+ E + T
Sbjct: 1103 PKAAHKDIELAYLIHPQVPTQIVGDLTRLRQILMNLLNNAIKFTEKGEVILSVRAEPVTT 1162
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
K N + F + DTG GI K +F
Sbjct: 1163 HK-------------------------------AKNSCQILFTIKDTGIGIPPDKMGRLF 1191
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ F Q D S TRK+GGTGLGL I + L M G + V + G
Sbjct: 1192 QPFVQADASMTRKYGGTGLGLVISKRLGEMMSGYLWVESQGCVG 1235
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 27/140 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA +L+K+G VV +GL+ + ++LQ P
Sbjct: 1432 LRILLAEDIVVNQKVALLMLKKMGYRADVVANGLEVL---------------AVLQHQP- 1475
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD++LMD MP+MDG E + IR++ ++ I+A+TA+AM D + CL
Sbjct: 1476 -------FDVVLMDVNMPEMDGLETSRRIRQTWNDRPY----IIAMTANAMQGDREACLA 1524
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ Y++KP+ E + +
Sbjct: 1525 AGMDDYISKPLQLEELAKAL 1544
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FD+ ++D QMP+MDG EIR+ G + +P+V LT+ ++ +G AY
Sbjct: 1331 QFDIAILDMQMPEMDGLTLAQEIRQRS---GYQYLPLVILTSWGQPDNDNALRNLGFTAY 1387
Query: 1076 LTKPIDSERMVSTILRLTKNMPSEA 1100
L KPI ++ + +N P A
Sbjct: 1388 LHKPIKQSQLYDVLACTLENQPIRA 1412
>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 1364
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINREVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 160/298 (53%), Gaps = 36/298 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+ +AEA++ KSQFLA SHE+RTPM ++G+L+ +L +D +T + Y+ Q+ A
Sbjct: 350 KTQAEAADVAKSQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQM--CGRA 407
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK+ELE FDL+ ++++V +FS + +E + + DN+P+
Sbjct: 408 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 467
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGR--- 587
V GDP R QI +NL+ N++KFT GH+ +R EN + N K GR
Sbjct: 468 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVES 527
Query: 588 ----AFRTKLKQQANNAMN----FR---------------------EDNKLALCFEVDDT 618
AF T +A + N F+ + +++ L ++DT
Sbjct: 528 TANGAFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDT 587
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G GI + VF F Q D ST+R +GGTG+GLSI + L MGG+I S G+
Sbjct: 588 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 645
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 38/171 (22%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S + +L G IL+ +D + VA L+K GA VS V G A+
Sbjct: 817 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI----------- 865
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------------- 1042
SLLQ P RFD MD QMP+MDG+EAT +IR+ E
Sbjct: 866 ----SLLQ--PPH-----RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE 914
Query: 1043 -SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
S ++P++A+TA + A ++C+ GM+ Y++KP D E++ + RL
Sbjct: 915 GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1112
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 155/277 (55%), Gaps = 36/277 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE ++ KS+FLANMSHE+RTP++ IIG L++L S+ + V +S+ +
Sbjct: 571 AKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASE-SADQSRKDLVDMTLESARS 629
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L +++N ILDLSKVE+GK++L + +F L+ + ++ ++S+Q N + +D +P
Sbjct: 630 LEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVDADSRLPE 689
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
VRGD R+ Q+ NL++N++KFT +GH++IR ++D K T E
Sbjct: 690 YVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDEHKATVE-------------- 735
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
F+V+D+G GI ++F+SF Q D + +KH G+GLG
Sbjct: 736 ---------------------FQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLG 774
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
L+I + LV MGGEI+V G++ L LG SS
Sbjct: 775 LAISQRLVQMMGGEIQVQSTPGRGSVFSFALTLGISS 811
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 74/160 (46%), Gaps = 43/160 (26%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL+ ED L + +LE G V +G +AV A
Sbjct: 833 LSILVVEDVELNREYMGYLLESRGHRVQFASNGEEAVSAF-------------------- 872
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE--------HGARN------------ 1049
+ RFDLILMD QMP +DG EAT IR E E HGAR
Sbjct: 873 ---EPGRFDLILMDIQMPGIDGLEATRRIRSMEGERLGERGMEHGARGGTPDVGSRDSAR 929
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+PI+ALTA+AM D +K L GM+ Y++KP+D +++ I
Sbjct: 930 VPIIALTAYAMPGDREKFLEEGMDGYVSKPVDPSKLLQEI 969
>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
Length = 728
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 147/274 (53%), Gaps = 28/274 (10%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DARR+AEA+N+ KS FLANMSHE+RTPM ++G+ E+L D LT EQ I+KS
Sbjct: 204 DARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMDTD-LTEEQNLYANTIRKSGE 262
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N +LD SK+E+ K+ L FDL++ + ELV + + +E ++D +P
Sbjct: 263 ALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVMLLQPNARDKELELLVDYDMFLP 322
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GDPGR+ Q+ +NLI N++KFT GH+++R + E P
Sbjct: 323 TRFHGDPGRIRQVLTNLIGNAVKFTEKGHVLVR----VVGMPAAAPESP----------- 367
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ A+ + R V+DTG GI K +F F Q + + R+ GTGL
Sbjct: 368 ----EHADAIAHLR--------ITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGL 415
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
GL+I R L+ M G+I + + G+ + L L
Sbjct: 416 GLAISRKLIAMMQGDIWIGSEEGRGSTFGISLNL 449
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L AED ++V +L+ + + DG QAV+ +
Sbjct: 587 MRVLAAEDNRTNRLVFSSMLKDLNIELHFAEDGRQAVDLYGEV----------------- 629
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
R D++ MD MP MDG EAT IR E G R++PI+A+TAHA+ +D+ + L
Sbjct: 630 ------RPDIVFMDISMPGMDGKEATAHIRALEKSTG-RHVPIIAMTAHALGSDKTEILS 682
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
G++ Y+TKP+ + ++ IL
Sbjct: 683 AGLDHYMTKPLRKDAIIEHIL 703
>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 988
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 181/354 (51%), Gaps = 39/354 (11%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I ++ + VI + IL + + +K+ + + + +AEA++ KSQFLA +SH
Sbjct: 332 IALTTAFLFFVILFLVGYILYSAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSH 391
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM I+G+L +L D +L++ Q + AL+ L+N +LD +K+E+GK+EL
Sbjct: 392 EIRTPMNGILGMLALL-LDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLEL 450
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ +++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+
Sbjct: 451 EAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSV 510
Query: 553 KFTSSGHIIIR------------GWCEN-LDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
KFT GHI ++ G E L+ + + + F + + N+
Sbjct: 511 KFTEQGHIFVKVHLADNRKSMMNGKHETFLNGESDEVFYISGDYHFKTLSGCEAADERNS 570
Query: 600 AMNFR-----------------------EDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
NF+ E L +C V+DTG GI S + +F F Q
Sbjct: 571 WDNFKHLIADKEYGLDSSRETMAACESSEQVTLRVC--VEDTGIGIPFSAQDRIFMPFVQ 628
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
D ST+R +GGTG+GLSI + LV MGG+I + + G+ + GA +S
Sbjct: 629 ADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCGAFKKS 682
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 38/182 (20%)
Query: 921 ERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP 980
+R Q+G +D P +S +L G +IL+ +D + + VA L+K GA V
Sbjct: 832 KRRQLG---KDMPNGFLHS------LLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAE 882
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
G A+E L + P FD MD QMP+MDG+EAT IR
Sbjct: 883 SGKAALEML--------------------QLPHN--FDACFMDIQMPEMDGFEATSRIRM 920
Query: 1041 SESEHGAR-------NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
ES+ ++PI+A+TA ++A KC+ GM+ Y++KP + E + + +
Sbjct: 921 MESKANEEMNNGNEWHVPILAMTADVIHATYDKCMKCGMDGYVSKPFEEENLYQEVAKFF 980
Query: 1094 KN 1095
K+
Sbjct: 981 KS 982
>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
Length = 967
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 180/334 (53%), Gaps = 44/334 (13%)
Query: 394 NGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
N + +E+ R + + L+ AR A A+NN KS+FLA+MSHE+RTPM AIIG+ ++L +
Sbjct: 297 NLLKQEIDERHRIEAELEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLL-WET 355
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
LT +Q V + + LL+++N ILDLSKVE+G++ +E+ EF+L++++E+ ++ +
Sbjct: 356 TLTPKQSEYVKVFRNAGENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAF 415
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ +E L+++IP + GDP R+ QI +NLI N+IKFT +G I++ G
Sbjct: 416 RAHEKGLELNCHLAEDIPTSFIGDPVRLHQILTNLIGNAIKFTRTGEILLTGK------- 468
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
R KL + K L F V DTG G+ + K +F
Sbjct: 469 -----------------RNKLPGK-----------KGMLLFLVSDTGIGLPEEKQSIIFN 500
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-----AS 687
F Q D STTR++GGTGLGL+I + LV M GEI V +++PG Y +
Sbjct: 501 IFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWV--ESTPGKGSTFYFTVTFDVHPKP 558
Query: 688 SESKQIYDADFPNTVVVLATVGSMERMIISQWLR 721
E K+I + V++ + RMI+ L
Sbjct: 559 QEQKEIPLSGAEKPYVLIIDDNATNRMILRDMLH 592
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 23/139 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++LL ED +++ L K V VV +GL+ +E
Sbjct: 721 QLLLVEDYYHNRVLIQAYLNKTNFKVDVVENGLECLEKFK-------------------- 760
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
++DL+LMD QMP MDGY AT EIR+ E E G + P++ALTAHA DE+K +
Sbjct: 761 ---NEKYDLVLMDIQMPVMDGYTATREIRRYEMELGLKATPVIALTAHAFKGDEQKSIDA 817
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G N +L KPI + ++ I
Sbjct: 818 GCNCHLIKPIKKQTLIDAI 836
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 1014 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1073
TP ++L+L+DC+MP MDG++ ++ G + I+ T+ + D + +G+
Sbjct: 619 TP-YNLLLLDCRMPGMDGFQIARSVKNDPELAG---LIIMMFTSDNKSGDVARAKELGIT 674
Query: 1074 AYLTKPIDSERMVSTI 1089
YL KPI ++++I
Sbjct: 675 TYLVKPIKRHDLLTSI 690
>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 1364
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 28/171 (16%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
+P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L R
Sbjct: 1014 RPGTRPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLKR 1073
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
P+ F L+LMD QMP +DGYEAT +R+ + ++P
Sbjct: 1074 -------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASLP 1109
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1110 VIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|345876523|ref|ZP_08828291.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226490|gb|EGV52825.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1675
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 39/305 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N +KS FLANMSHE+RTPM AIIG+ L +LT++Q + +I+ SS+ LL ++N
Sbjct: 923 NRFKSNFLANMSHEIRTPMNAIIGMSH-LALQTELTSKQLDYLQKIQSSSHHLLGIINDT 981
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+G++E+E T F L + LE L + +++ +E V + ++P + GDP R
Sbjct: 982 LDFSKIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLR 1041
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ NL N+IKFT SG +++ LD
Sbjct: 1042 LGQVLLNLAQNAIKFTESGEVVVS--VRLLD----------------------------- 1070
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
R ++ + FE+ D+G GID + +F++F Q D ST+R +GGTGLGLSI + LV
Sbjct: 1071 ----RSAQQVRVGFEIRDSGIGIDPQRLPHLFDAFVQADGSTSRHYGGTGLGLSICKQLV 1126
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY---DADFPNTVVVLATVGSMERMII 716
M G++ V + G+ + L G E + D D V+L M R ++
Sbjct: 1127 ELMQGQLSVESRLGEGSCFRFELAFGLQPEQQPRQFEPDPDLQGMRVLLVDDNPMVRTVL 1186
Query: 717 SQWLR 721
+ LR
Sbjct: 1187 ADMLR 1191
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 34/189 (17%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D I ++F+E G R P + ++ + L+G ++LL ED P+ Q VA ++L+
Sbjct: 1292 DTIMSVFKES---GRGRETVPAARFGATPGR---LKG-KVLLVEDNPINQQVALELLQSF 1344
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
G V V DG A+ L ES+ FDL+LMD QMP MDGY
Sbjct: 1345 GLLVLVAEDGRAALRRLQ-----ESA------------------FDLVLMDVQMPLMDGY 1381
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR- 1091
E T +IR+ + +P++A+TAHAM+ D +KCL GM+ YL+KPID ++++T+
Sbjct: 1382 ETTRQIRQQPE---LQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHW 1438
Query: 1092 LTKNMPSEA 1100
L + + SEA
Sbjct: 1439 LGEQLLSEA 1447
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G+R+LL +D P+++ V +L V V G A EA ++ A + L +
Sbjct: 1168 LQGMRVLLVDDNPMVRTVLADMLRSFSFEVEV---GANAAEAYELLMGAGAV---GLAKP 1221
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P F L+LMD MP ++G +A I++ + + ++ +TA ++
Sbjct: 1222 KP--------FQLVLMDWHMPPVNGIDAVQHIKQELAL--VQQPKMILVTAFGREELMQQ 1271
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
G++A L KP + + TI+ + K
Sbjct: 1272 SQAAGLDAVLLKPANPSLLFDTIMSVFKE 1300
>gi|381172550|ref|ZP_09881675.1| sensory box protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|380686968|emb|CCG38162.1| sensory box protein [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 1364
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|424896358|ref|ZP_18319932.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180585|gb|EJC80624.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 1126
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 38/290 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+K R E + HL +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L + L Q
Sbjct: 568 ELKSREEELRHLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTN-LDTRQ 624
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I KS ALL ++N ILD SK+++G+M+L FD+ + +E++ + S + N
Sbjct: 625 KTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKN 684
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E ++ + ++P V GD GR QI +NL+ N++KFT GH+ + D A
Sbjct: 685 IELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFV-------DVGFEPA-- 735
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++ ++DTG GI K ETVF+ F Q D
Sbjct: 736 --------------------------AGGEIMASIRIEDTGIGIPTEKLETVFDKFSQVD 769
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
S+TR+H GTGLGL+I LV+ GG + V + G++ + L ++
Sbjct: 770 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTVTLPFAVAA 819
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 24/142 (16%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
E + +L+AED + QIV +IL+ G + VV +G +AV A R
Sbjct: 993 EFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVNNGEEAVAAWERH--------------- 1037
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
TPR +I+MD MP M+G++AT IR+ E G R +PI+ +TAHA+ +D + C
Sbjct: 1038 ------TPR--IIMMDVSMPVMNGHQATQTIREREKGQGHR-VPIIGVTAHALESDRELC 1088
Query: 1068 LGVGMNAYLTKPIDSERMVSTI 1089
L GM+ Y++KPI E + I
Sbjct: 1089 LDAGMDDYMSKPISPELLEEKI 1110
>gi|428221124|ref|YP_007105294.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994464|gb|AFY73159.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1767
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 144/257 (56%), Gaps = 31/257 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ KAEA+ KS FLANMSHE+RTPM +IG+ ++L D LT EQ V IK S A
Sbjct: 1366 AKEKAEAATIAKSAFLANMSHEIRTPMNGVIGIADLLAEQD-LTTEQQELVQIIKYSGNA 1424
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESG + LE+ EF L L + + S Q ++ ++ LS ++P+
Sbjct: 1425 LLTIINDILDFSKIESGMLALESHEFSLGDILASVCKLLSSQAADKHITLGYTLS-SMPQ 1483
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
GD R+ QI NL+ N+IKFT SG++ I F T
Sbjct: 1484 TFIGDSARLRQILLNLVGNAIKFTESGNVSI-------------------------TFST 1518
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
KL +A N + +N+ L F V DTG GID ++ +F+ F Q D S +RK+GGTGLG
Sbjct: 1519 KLLDRAFN----QHENQYELSFTVKDTGIGIDPARLHKLFQPFTQADASISRKYGGTGLG 1574
Query: 652 LSIVRTLVNKMGGEIKV 668
L+I + LV M G I V
Sbjct: 1575 LAISKRLVELMKGTIWV 1591
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 72/132 (54%), Gaps = 29/132 (21%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILL ED + Q VA L+K+G + +V +GL EALN +L AE+
Sbjct: 1649 LRILLVEDNLVNQKVAKFALKKLGYKIDIVNNGL---EALN-ILQAEA------------ 1692
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+DLI MD QMP+MDG AT IR++ N P IVA+TA+AM D + CL
Sbjct: 1693 -------YDLIFMDIQMPEMDGLTATRLIRQN-----LVNQPWIVAMTANAMPEDRQTCL 1740
Query: 1069 GVGMNAYLTKPI 1080
GMN Y+ KP
Sbjct: 1741 EAGMNDYIAKPF 1752
>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 1364
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|418518149|ref|ZP_13084301.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410704844|gb|EKQ63324.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1006
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 40/338 (11%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
++ + VIG + IL +K+ + D + +AEA++ KSQFLA +SHE+
Sbjct: 335 LTTTFLFFVIGLLVGYILYEAAIHIVKVEDDFHEMQDLKVQAEAADVAKSQFLATVSHEI 394
Query: 435 RTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM I+G+L +L +D T Y+ Q+ AL+ L+N +LD +K+E+GK+ELE
Sbjct: 395 RTPMNGILGMLALLLDTDLSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELE 452
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
F ++ +++++ +FS + N +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 453 AVPFHIRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIITNLVGNSVK 512
Query: 554 FTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG-----------RAFRTKLKQQANNAMN 602
FT GH ++ + +K T + D G + F+T +A + N
Sbjct: 513 FTERGHTFVK--VHLYEHAKATTDTKADTCLIGGSNESVLISGSQKFKTLSGCEAADDQN 570
Query: 603 ------------FRED------------NKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
FR D + L V+DTG GI VF F Q D
Sbjct: 571 SWDVFKHLSDEDFRFDASINVMTSNEASENITLMVCVEDTGIGIPLKAQSRVFMPFVQAD 630
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
ST+R +GGTG+GLSI + LV MGG+I + + G+
Sbjct: 631 SSTSRHYGGTGIGLSISKCLVELMGGQISFISRPEVGS 668
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 39/181 (21%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
+R Q N SS + +L G +IL+ +D + + VA L+K GA V G +A++
Sbjct: 839 KRSQGKCMPNGSSFLQSLLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKL 898
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE---- 1044
L + P T FD MD QMP+MDG+EAT IR+ ES+
Sbjct: 899 L--------------------QLPHT--FDACFMDIQMPEMDGFEATRRIRQMESQANEQ 936
Query: 1045 -------------HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
G +IPI+A+TA ++A +CL GM+ Y++KP + E + + R
Sbjct: 937 MNGESMVEGGTARKGQWHIPILAMTADVIHATHDECLKCGMDGYVSKPFEEENLYQAVAR 996
Query: 1092 L 1092
Sbjct: 997 F 997
>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|428312058|ref|YP_007123035.1| ATPase [Microcoleus sp. PCC 7113]
gi|428253670|gb|AFZ19629.1| putative ATPase [Microcoleus sp. PCC 7113]
Length = 2014
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 228/486 (46%), Gaps = 55/486 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ KAE +N KS FLANMSHELRTP+ AI+G +++ L E V I +S
Sbjct: 1521 AKEKAEVANKAKSTFLANMSHELRTPLNAILGFSQLMTRSKTLPPEHIENVGIISRSGEH 1580
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LDLSK+E+G+ L T FDL + L++L DMF + ++ ++ + + + ++P+
Sbjct: 1581 LLTLINNVLDLSKIEAGRTTLNETNFDLYRLLDDLEDMFRFKANDKGLQLICERASDVPQ 1640
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+R D ++ QI NL++N++KFT G + +R N + K T K+ G + +
Sbjct: 1641 YMRTDETKLRQILINLLSNALKFTKQGGVSVRVGMNNSQSLKATG------KESGISPK- 1693
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
KLA+ FE++DTG G+ + +T+FE+F Q + GTGLG
Sbjct: 1694 ----------------KLAITFEIEDTGAGMAAEELDTLFEAFVQTKTGKESQE-GTGLG 1736
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL----GASSESKQ------IYDADFPNT 701
L I R+ V MGG+I V GTL + +L+ AS +KQ + + P
Sbjct: 1737 LPITRSFVQLMGGKITVRSSVGKGTLFKFDILVSPVDAASITTKQPTRQVIALEPNQPRY 1796
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRE------LLDPISPVSSNGF 755
+++A R ++ + L E S +I E +D PV +G+
Sbjct: 1797 RILIADDKWSNRQLLIKLLNPLGFELREASNGKEAVEIWDEWEPHLIWMDMQMPV-MDGY 1855
Query: 756 DAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHR------- 808
+A + +K + T + AL + L D R+ DIF
Sbjct: 1856 EATKQIKATIKGQATAVIALTATSLEEERAVVLSAGCDDFIRKPFREADIFDTMNKHIGV 1915
Query: 809 KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYK---GKMIQLLETAVRGKILGMQNRI 865
+ ++ V + Q+ + I T S + Q I+ L + L E +R K+ N+I
Sbjct: 1916 RYIYEDVRDVQSLTTINTNTSVDIQEILTPTALAALPFDLLTNLEEATIRSKM----NQI 1971
Query: 866 SSTTNE 871
S NE
Sbjct: 1972 DSLINE 1977
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 30/148 (20%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRR 1001
NQ R RIL+A+D + + K+L +G + +G +AVE +
Sbjct: 1792 NQPR----YRILIADDKWSNRQLLIKLLNPLGFELREASNGKEAVEIWD----------- 1836
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
+ P LI MD QMP MDGYEAT +I+ + + ++ALTA ++
Sbjct: 1837 ---EWEPH---------LIWMDMQMPVMDGYEATKQIKATIK---GQATAVIALTATSLE 1881
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ L G + ++ KP + T+
Sbjct: 1882 EERAVVLSAGCDDFIRKPFREADIFDTM 1909
>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 28/171 (16%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
+P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L R
Sbjct: 1014 RPGTRPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLKR 1073
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
P+ F L+LMD QMP +DGYEAT +R+ + ++P
Sbjct: 1074 -------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASLP 1109
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1110 VIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|418522922|ref|ZP_13088950.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700534|gb|EKQ59084.1| two-component system sensor protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|346725360|ref|YP_004852029.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346650107|gb|AEO42731.1| two-component system sensor protein [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 28/171 (16%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
+P + + + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L R
Sbjct: 1014 RPGTRPATPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLKR 1073
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
P+ F L+LMD QMP +DGYEAT +R+ + ++P
Sbjct: 1074 -------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASLP 1109
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1110 VIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1202
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 152/273 (55%), Gaps = 37/273 (13%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+ K++ R + L A AE++N KS+FLANMSHE+RTPM ++G++E+L S+ +
Sbjct: 513 GIHKDISDRKRVEDELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELL-SNTE 571
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT EQ S + + S+ +LL ++N ILD SK+E+GK+ELE FDL + +E++ + + +
Sbjct: 572 LTPEQQSHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQR 631
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ +E + + ++P V GDP R+ Q+ NL+ N++KFT G + +R E D
Sbjct: 632 VDSEKLELLHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDA-- 689
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ + + EV DTG GID++ +F
Sbjct: 690 ---------------------------------DTVTVLTEVRDTGIGIDEAVRPRLFRM 716
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
F Q D STTR+ GGTGLGL+I + LV MGGE+
Sbjct: 717 FTQADGSTTRRFGGTGLGLAISKQLVELMGGEV 749
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LL ED P+ Q VA +L +G V + DG + V R
Sbjct: 935 VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLFARH------------------- 975
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+DL+LMD QMP MDGYE T IR+ E PIVALTA+AM D +CL
Sbjct: 976 ----RYDLVLMDIQMPGMDGYETTDAIRQMERSERWPRTPIVALTANAMEQDRDRCLAAD 1031
Query: 1072 MNAYLTKPIDSERMVSTILRLTKNM-----PSEATG 1102
M+ YL+KPI +R+ + + + K + P E G
Sbjct: 1032 MDDYLSKPISLDRLKAAMSKWLKTIAKSEEPEEVLG 1067
>gi|345862744|ref|ZP_08814958.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345126086|gb|EGW55952.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 1658
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 39/305 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N +KS FLANMSHE+RTPM AIIG+ L +LT++Q + +I+ SS+ LL ++N
Sbjct: 906 NRFKSNFLANMSHEIRTPMNAIIGMSH-LALQTELTSKQLDYLQKIQSSSHHLLGIINDT 964
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+G++E+E T F L + LE L + +++ +E V + ++P + GDP R
Sbjct: 965 LDFSKIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLR 1024
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ NL N+IKFT SG +++ LD
Sbjct: 1025 LGQVLLNLAQNAIKFTESGEVVVS--VRLLD----------------------------- 1053
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
R ++ + FE+ D+G GID + +F++F Q D ST+R +GGTGLGLSI + LV
Sbjct: 1054 ----RSAQQVRVGFEIRDSGIGIDPQRLPHLFDAFVQADGSTSRHYGGTGLGLSICKQLV 1109
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSES--KQIY-DADFPNTVVVLATVGSMERMII 716
M G++ V + G+ + L G E +Q D D V+L M R ++
Sbjct: 1110 ELMQGQLSVESRLGEGSCFRFELAFGLQPEQQPRQFEPDPDLQGMRVLLVDDNPMVRTVL 1169
Query: 717 SQWLR 721
+ LR
Sbjct: 1170 ADMLR 1174
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 34/189 (17%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D I ++F+E G R P + ++ + L+G ++LL ED P+ Q VA ++L+
Sbjct: 1275 DTIMSVFKES---GRGRETVPAARFGATPGR---LKG-KVLLVEDNPINQQVALELLQSF 1327
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
G V V DG A+ L ES+ FDL+LMD QMP MDGY
Sbjct: 1328 GLLVLVAEDGRAALRRLQ-----ESA------------------FDLVLMDVQMPLMDGY 1364
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR- 1091
E T +IR+ + +P++A+TAHAM+ D +KCL GM+ YL+KPID ++++T+
Sbjct: 1365 ETTRQIRQQPE---LQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHW 1421
Query: 1092 LTKNMPSEA 1100
L + + SEA
Sbjct: 1422 LGEQLLSEA 1430
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G+R+LL +D P+++ V +L V V G A EA ++ A + L +
Sbjct: 1151 LQGMRVLLVDDNPMVRTVLADMLRSFSFEVEV---GANAAEAYELLMGAGAV---GLAKP 1204
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P F L+LMD MP ++G +A I++ + + ++ +TA ++
Sbjct: 1205 KP--------FQLVLMDWHMPPVNGIDAVQHIKQELAL--VQQPKMILVTAFGREELMQQ 1254
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
G++A L KP + + TI+ + K
Sbjct: 1255 SQAAGLDAVLLKPANPSLLFDTIMSVFKE 1283
>gi|381189393|ref|ZP_09896941.1| diguanylate cyclase/phosphodiesterase [Flavobacterium frigoris PS1]
gi|379648602|gb|EIA07189.1| diguanylate cyclase/phosphodiesterase [Flavobacterium frigoris PS1]
Length = 1120
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 225/464 (48%), Gaps = 91/464 (19%)
Query: 348 IVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELI 407
++GV+++ R+ D++ +T LI A V L G+++E K AE
Sbjct: 563 VLGVVVVARDI----TDQKVIETE--LIEAKV---------FAELATGIAEEEKRNAEYA 607
Query: 408 SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIK 466
+ + AE + K QFL+NMSHE+RTPM AIIG ++ LK+D L+ +Q + IK
Sbjct: 608 ALI-----AENAVKAKQQFLSNMSHEIRTPMNAIIGFTKVVLKTD--LSEKQKEYLSAIK 660
Query: 467 KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS 526
S AL+ L+N ILDL+KV++GKM E F L+ + ++ +F + N++ + +
Sbjct: 661 MSGDALIVLINDILDLAKVDAGKMTFEKIPFKLKSSISSMLHLFETKIQEKNLKLITEYD 720
Query: 527 DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFG 586
NIP + GDP R+ QI NL++N++KFTS G I +
Sbjct: 721 PNIPPIIIGDPVRLHQIILNLVSNAVKFTSKGKITV------------------------ 756
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
A R +++ A NA+ + F V DTG GI + K T+F++F+Q T+R +G
Sbjct: 757 -AVRL-VQEDAENAI---------IEFAVTDTGIGIPEEKLLTIFDNFQQASSGTSRIYG 805
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI------YDADFPN 700
GTGLGL+IV+ LV GG I V+ + GT L + ++ D++ N
Sbjct: 806 GTGLGLAIVKQLVEPQGGAIDVISEVGVGTTFSFRLKFEKTDLEAELDTEILELDSEVKN 865
Query: 701 TVVVLATVGSMERMIISQWLR------------KKKVSTLETSEWHGLTQILRELLDPIS 748
V++ ++ ++++ L K + L+ E+ + L+D
Sbjct: 866 IKVLVVEDIALNQLLMKTLLDDFGFERDIAENGKIAIEKLKNKEYDVI------LMDLQM 919
Query: 749 PVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLS 792
PV NGF++ R+ L +++ P+ + D+ +DL+
Sbjct: 920 PV-MNGFESTEYIRKTLNSQI--------PIIALTADVTTVDLA 954
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 27/148 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
++ +++L+ ED L Q++ +L+ G + +G A+E L
Sbjct: 863 VKNIKVLVVEDIALNQLLMKTLLDDFGFERDIAENGKIAIEKLK---------------- 906
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+D+ILMD QMP M+G+E+T IRK+ + IPI+ALTA D K
Sbjct: 907 -------NKEYDVILMDLQMPVMNGFESTEYIRKTLNSQ----IPIIALTADVTTVDLAK 955
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
C VGMN Y+ KP+D + S I+ + +
Sbjct: 956 CKAVGMNDYIAKPVDERLLYSKIINIVR 983
>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
Length = 744
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 157/307 (51%), Gaps = 39/307 (12%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+ +L+L + + A L+ A+ +AE++N + FLANMSHE+RTPM AI+G+ E
Sbjct: 171 VRLLVLHRDIVDQKSAEAALVR---AKEQAESANRARGFFLANMSHEIRTPMNAILGMTE 227
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
L D + E S + +K S+ +LL ++N +LDLSK+E+GK+ELE+ ++ L ++
Sbjct: 228 -LALDATVEAEPRSYLTTVKSSAESLLNIINDVLDLSKIEAGKVELESVPMSVRTILNDV 286
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
V F+V +E +LD++ +P + GDP R+ QI +NLI N+IKFT G ++++ W
Sbjct: 287 VRAFAVSAHGKGLEIMLDVAPEMPDRLFGDPTRLRQILANLIGNAIKFTERGEVLVKAWV 346
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R L L F V DTG GI
Sbjct: 347 LR-----------------------------------RAGMSLYLQFAVCDTGIGIAADH 371
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
E +F++F Q D ST R+ GGTGLGL+I LV + G+I + + GT + A
Sbjct: 372 HEQIFDAFTQADVSTARRFGGTGLGLAISNQLVKLLDGQIWLESEPGKGTSFYFTVRFAA 431
Query: 687 SSESKQI 693
S I
Sbjct: 432 DQTSSSI 438
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 74/140 (52%), Gaps = 31/140 (22%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
E L +LL EDTP+ Q +A K+L K G V+V +G +A+E +R
Sbjct: 596 EPLNVLLVEDTPVNQTLAVKLLAKAGHRVTVAANGREALERFDRQ--------------- 640
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE-------SEHGARNIPIVALTAHAM 1060
RFDLILMD QMP +DG EAT IR E +H R I A+TAHAM
Sbjct: 641 --------RFDLILMDVQMPVLDGMEATTAIRAREMNRSWAMGQH-QRVSYIAAMTAHAM 691
Query: 1061 NADEKKCLGVGMNAYLTKPI 1080
D ++CL GM+ YL+KPI
Sbjct: 692 EGDRERCLAAGMDDYLSKPI 711
>gi|390992031|ref|ZP_10262279.1| sensory box protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|372553255|emb|CCF69254.1| sensory box protein [Xanthomonas axonopodis pv. punicae str. LMG
859]
Length = 1364
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + D+ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIADLMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R LV MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEV--ESLPGRGS 862
Query: 679 QLYLLL 684
+ Y ++
Sbjct: 863 EFYFVV 868
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
++P + ++ + R LEG +LL +D+ + VA +ILE GA V+V DG QAV L
Sbjct: 1013 ERPGARPSTPTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAVSTLK 1072
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R P+ F L+LMD QMP +DGYEAT +R+ + ++
Sbjct: 1073 R-------------------APNL--FHLVLMDVQMPVVDGYEATRRLRQIPA---LASL 1108
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMPS 1098
P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +PS
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIPS 1160
>gi|218709306|ref|YP_002416927.1| two-component regulatory system multi-sensor hybrid histidine
kinase [Vibrio splendidus LGP32]
gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
histidine kinase [Vibrio splendidus LGP32]
Length = 1223
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 169/316 (53%), Gaps = 41/316 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N+ KS FLANMSHE+RTPM AIIG+ + LK+D LT Q + + ++K SS LL L+N
Sbjct: 477 NHAKSDFLANMSHEIRTPMNAIIGMSYLALKTD--LTKAQRNYIHKVKLSSDTLLGLIND 534
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+GK+++E +F L+ L+ + ++ ++ S+ +E ++ + ++P N+ GDP
Sbjct: 535 ILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPL 594
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI NL NN++KFT G + I S + AE
Sbjct: 595 RLGQILINLSNNAVKFTEKGEVKI---------SISVAE--------------------- 624
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
R+ + + L F V D+G G+ Q + +F F Q D STTRK+GGTGLGL+I + L
Sbjct: 625 -----RQGDDIKLNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKEL 679
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ---IYDADFPNTVVVLATVGSMERMI 715
MGG+I V + G+ + S +Q + A N V++ S R+I
Sbjct: 680 SQLMGGDIHVSTELGKGSTFSFTIATRVSHSIQQHRVVVPASINNLKVLVVDDNSSARLI 739
Query: 716 ISQWLRKKKVSTLETS 731
+ L K++ + +S
Sbjct: 740 VGDILESLKLTPILSS 755
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ILL ED + Q +A ++LE V++ +G QA++ + +
Sbjct: 873 LAGANILLVEDNEINQELATELLEGQQIKVTIAENGQQAIDLYQQAI------------- 919
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
T D P FD ILMDCQMP MDGYEAT IR+ ++ ++IPI+A+TA+ M D++K
Sbjct: 920 ----TDDVP-FDGILMDCQMPVMDGYEATEYIRQQIND---QDIPIIAMTANVMERDKEK 971
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
L GM+ + KPID M +T+
Sbjct: 972 ALSCGMSDIIAKPIDVGSMFATL 994
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 184/364 (50%), Gaps = 32/364 (8%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 408 FFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 467
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 468 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 524
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N ++E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 525 IRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKG 584
Query: 559 HIIIR-------------------GWCENLDTSKNTAEFPT-------DRKKFGRAFRTK 592
HI ++ G E + + + T D + +F+
Sbjct: 585 HIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFK-H 643
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L + + F + + L ++DTG GI VF F Q D ST+R +GGTG+GL
Sbjct: 644 LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGL 703
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSME 712
SI + LV M G+I + + G+ +L + I PN + +T M+
Sbjct: 704 SISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMK 763
Query: 713 RMII 716
+++
Sbjct: 764 AIVV 767
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L G +IL+ +D + + VA L+
Sbjct: 885 RASMIGACLQQVLELRKTRQQHPEGSSPAT--LKSLLTGKKILVVDDNIVNRRVAAGALK 942
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ P T FD MD QMP+MD
Sbjct: 943 KFGAEVVCAESGQVAL---------------GLLQ-----IPHT--FDACFMDIQMPQMD 980
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 981 GFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1040
Query: 1086 VSTILRLTKNMP 1097
++ + K P
Sbjct: 1041 YKSVAKSFKPNP 1052
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 31/316 (9%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL-KSDDQLTNEQYSTVCQIKKSSYALL 473
+AEA++ KSQFLA +SHE+RTPM I+G+L +L +D + T Y+ Q S L+
Sbjct: 371 QAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLRSTQRDYAQTAQACGKS--LI 428
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
L+N +LD +K+E+GK+ELE FDL+ L++++ +FS + VE + +SD +P V
Sbjct: 429 TLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPGIV 488
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC--ENLDTSKNTAEFPTDRKKFGR---A 588
GDPGR Q+ +NL+ NS+KFT GHI ++ + D KN + +
Sbjct: 489 MGDPGRFRQVITNLVGNSVKFTEQGHIFVQVHLAEQTKDGVKNNTCLTGESESVYETLSG 548
Query: 589 FRTKLKQQ---------ANNAMNFREDNKLA---------LCFEVDDTGCGIDQSKWETV 630
+ T Q A+N + ++ K A + V+DTG GI + V
Sbjct: 549 YETAASQNTWDSLKHTIADNGLYYKSATKEANDDLSQNVTVMVSVEDTGIGIPIQAQDRV 608
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL-----G 685
F F Q D ST+R +GGTG+GLSI + LV MGG+I + + G+ L L
Sbjct: 609 FTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRPQIGSTFSFTLNLLRCEKY 668
Query: 686 ASSESKQIYDADFPNT 701
A S+ K+ + D P +
Sbjct: 669 AVSDLKKSHSDDLPTS 684
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R ++ ++ IG+ R + + +S + +L G +IL+ +D + + VA L+
Sbjct: 804 RASMMAACLKQLIGIGNKREGKDMCNGSS---LRGLLCGKKILVVDDNLVNRRVAAGALK 860
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ SLLQ P FD MD QMP+MD
Sbjct: 861 KFGADVECADSGKAAL---------------SLLQ-----IPHN--FDACFMDIQMPEMD 898
Query: 1031 GYEATIEIRK-----SESEHGARN-----------IPIVALTAHAMNADEKKCLGVGMNA 1074
G+EAT IR +E +G N +PI+A+TA ++A +KCL GM+
Sbjct: 899 GFEATRRIRDLERVANEQLNGGLNSDGATKWRKWHMPILAMTADVIHATLEKCLKCGMDG 958
Query: 1075 YLTKPIDSERMVSTILRLTKNMP 1097
Y++KP + E + + + ++ P
Sbjct: 959 YVSKPFEEENLYQAVSKFFESKP 981
>gi|254415523|ref|ZP_05029283.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177704|gb|EDX72708.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1568
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 146/257 (56%), Gaps = 31/257 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AEA+ KS+FLA MSHE+RTPM A+IG+ +L D +LT++Q I+ S A
Sbjct: 897 ARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLL-DTELTSDQRYFAETIRNSGDA 955
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGKMELE F+L+ +EE +D+ + + + N+E + P
Sbjct: 956 LLTIINDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKAAEKNLELAYLIDSQTPN 1015
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NLI+N++KFT +G +++ TA+ D + G
Sbjct: 1016 WIAGDVTRLRQILVNLISNAVKFTPTGEVLV----------SVTAQILADEEDRG----- 1060
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++ L F V DTG GI + +F+SF Q D ST+R++GGTGLG
Sbjct: 1061 ---------------DRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLG 1105
Query: 652 LSIVRTLVNKMGGEIKV 668
L+I + L MGG++ V
Sbjct: 1106 LAICKRLCEMMGGQMWV 1122
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED + Q +A ++L+++G V +GL+ +EAL R
Sbjct: 1323 LRILVAEDNKVNQQLALQLLQRMGYRADVAGNGLEVIEALRRQ----------------- 1365
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++ MD QMP+MDG +AT I + A I+A+TA+AM D +KCL
Sbjct: 1366 ------PYDVVFMDVQMPEMDGLDATRHI--CQQWLPANRPRIIAMTANAMQGDREKCLE 1417
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VGM+ Y++KPI +V L+++ P+E
Sbjct: 1418 VGMDDYISKPIRVNELVRV---LSQSQPTE 1444
>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
Length = 1144
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 164/296 (55%), Gaps = 40/296 (13%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G ++I+T+ EMK+R + L +R AEA++ KS+FLANMSHE+RTPM ++G+
Sbjct: 559 GNYWLVIVTD--VTEMKMREGELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGM 614
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
E+L + L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E
Sbjct: 615 AELLAKSN-LDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVE 673
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
++V + S N+E V+ ++ ++ V GD GR QI +NL+ N++KFT +GH+++
Sbjct: 674 DVVSLLSSAALEKNIELVVRIAPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV-- 731
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
+ S +AE A+ A+ L V+D+G GI
Sbjct: 732 -----ELSAQSAE-------------------ASEAI---------LSLRVEDSGIGIPS 758
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
K ET+F+ F Q D S TR+H GTGLGL+I LV G+I VV + G+ ++
Sbjct: 759 DKLETIFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGSSFEV 814
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 34/188 (18%)
Query: 926 GSSRRDQPCSSSNSSSNQKRILEGLR-----ILLAEDTPLIQIVACKILEKVGATVSVVP 980
GSSR + P S + + LR +L+AED + QIV +IL++ G +V
Sbjct: 979 GSSRPEGPASEKKRRAEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVG 1038
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
+G +AV+A A +ILMD MP M+G++AT IR
Sbjct: 1039 NGKKAVQAWEEYNPA-----------------------IILMDVSMPVMNGHQATQAIRT 1075
Query: 1041 SE-SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR-LTKNMP- 1097
+E + R++PI+ +TAH +AD CL GM+ YL+KPI E + I + L ++P
Sbjct: 1076 AELAAAEGRHVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWLGADIPR 1135
Query: 1098 ---SEATG 1102
+ATG
Sbjct: 1136 LVSDDATG 1143
>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
degradans 2-40]
gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1109
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 149/267 (55%), Gaps = 36/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L A+ +AE+S+ KS+FLA MSHE+RTPM ++G+L ++ + LT EQ + + S
Sbjct: 406 LAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVL-NSSLTPEQERKLLLAQSSG 464
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+LL ++N ILD SKVE+GK+ELE+ +FD + L ++V F+ +E VLD
Sbjct: 465 QSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVLDDIGLG 524
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
+ +RGDP R+ QI +NL++N++KFTS G II+R
Sbjct: 525 GKVLRGDPSRLRQIINNLLSNALKFTSQGEIIVRA------------------------- 559
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
KL + N R C V DTG GI K +F+SF Q D STTR++GGTG
Sbjct: 560 --KLDSEINGLNQLR-------C-SVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTG 609
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGLSI + L MGG+I VV + GT
Sbjct: 610 LGLSICKMLTRIMGGDIFVVSEVGKGT 636
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 22/152 (14%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ +RIL+ ED + Q V ILE G ++V DG QA+ AL
Sbjct: 817 DNVRILVVEDNLVNQQVIAGILEDFGLAFTLVDDGQQAISAL------------------ 858
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
E R+ + MDCQMP +DGY AT +IR+ + + +PIVALTA+AM D KC
Sbjct: 859 -KENTGDLRYHFVFMDCQMPVLDGYNATKQIREGAAGEECKIVPIVALTANAMQGDRDKC 917
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
L GMN Y+ KP+D++ + L L +P+E
Sbjct: 918 LRAGMNDYVAKPVDADEVR---LALVSWLPAE 946
>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 1582
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 158/285 (55%), Gaps = 20/285 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ A+A+N KS+FLA MSHE+RTPM A+IG+ +L + L N+Q V I+ S A
Sbjct: 1037 ARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLL-NTTLDNQQRDFVETIRSSGDA 1095
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+E+GK+E E F L+ +EE + + + + + +E + P
Sbjct: 1096 LLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPN 1155
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL-DTSKNTAEFPTDRKKFGRAFR 590
++ GD R+ QI NL+ N +KFT G ++I + +++ DT E RK F
Sbjct: 1156 HIVGDVTRLRQILVNLLTNGVKFTEQGEVVI--YVQDITDTDIAQPETTPQRKNF----- 1208
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T ++ Q + + FEV D+G GI + + +F+SF Q D STT+K+GGTGL
Sbjct: 1209 TDIQNQ-----------RRLVQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGL 1257
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD 695
GL+I R+L MGG I V K G+ + + + E + D
Sbjct: 1258 GLAICRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGENTLD 1302
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 27/143 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q VA IL+++G V +G + +EAL+R
Sbjct: 1454 LQILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLEALHRQ----------------- 1496
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMP+MDG A I++ E + P I+ALTA+AM D + C+
Sbjct: 1497 ------SYDVVLMDVQMPEMDGLTAARHIKEQWQEE---DQPYIIALTANAMQGDREMCM 1547
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ Y++KPI + + S R
Sbjct: 1548 AAGMHDYVSKPIRVDELKSAFER 1570
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N+ +++L+G ++L+ +D P + + + G + V G +A+ +L ++S
Sbjct: 1299 NTLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALA----LLESDS 1354
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1057
+FDL ++D QMP+MDG E IR+ + +++P+V L++
Sbjct: 1355 ------------------KFDLAILDMQMPEMDGVELARHIRQLDQR---KHLPLVMLSS 1393
Query: 1058 HAMNADEKKCLGVGMNAYLTKPI 1080
+ K + +A L KPI
Sbjct: 1394 LGQDEIIKHKQEIQFSAILNKPI 1416
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis
histidine kinase 4; Short=AtHK4; AltName: Full=Cytokinin
receptor CYTOKININ RESPONSE 1; Short=AtCRE1;
Short=Cytokinin receptor CRE1; AltName:
Full=Phosphoprotein phosphatase AHK4; AltName:
Full=Protein AUTHENTIC HIS-KINASE 4; AltName:
Full=Protein ROOT AS IN WOL 1; AltName: Full=Protein
WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 184/364 (50%), Gaps = 32/364 (8%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 431 FFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 490
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 491 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 547
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N ++E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 548 IRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKG 607
Query: 559 HIIIR-------------------GWCENLDTSKNTAEFPT-------DRKKFGRAFRTK 592
HI ++ G E + + + T D + +F+
Sbjct: 608 HIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFK-H 666
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L + + F + + L ++DTG GI VF F Q D ST+R +GGTG+GL
Sbjct: 667 LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGL 726
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSME 712
SI + LV M G+I + + G+ +L + I PN + +T M+
Sbjct: 727 SISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMK 786
Query: 713 RMII 716
+++
Sbjct: 787 AIVV 790
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L G +IL+ +D + + VA L+
Sbjct: 908 RASMIGACLQQVLELRKTRQQHPEGSSPAT--LKSLLTGKKILVVDDNIVNRRVAAGALK 965
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ P T FD MD QMP+MD
Sbjct: 966 KFGAEVVCAESGQVAL---------------GLLQ-----IPHT--FDACFMDIQMPQMD 1003
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 1004 GFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1063
Query: 1086 VSTILRLTKNMP 1097
++ + K P
Sbjct: 1064 YKSVAKSFKPNP 1075
>gi|441504433|ref|ZP_20986427.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
gi|441427900|gb|ELR65368.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
Length = 920
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 150/266 (56%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ +L++ Q + I+KS+
Sbjct: 279 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--RLSSSQQDYLQTIEKSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD + L+E++ + + +E L + + IP
Sbjct: 337 NLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMKLLAPSAHEKGLELTLKIDERIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NLI N++KFT G N+D S E TD+
Sbjct: 397 AGLIGDPLRIQQVLTNLIGNAVKFTERG---------NIDVS---VELKTDK-------- 436
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
D + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 437 ---------------DANIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV +MGGEI + + G+
Sbjct: 482 GLVITQKLVTQMGGEISLTSRLHQGS 507
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP+MDG A+ EI K+E ++ P++A+TAHAM + ++ L GM+ YL
Sbjct: 710 FDLIFMDIQMPEMDGVTASQEIHKTELN---QHTPVIAVTAHAMVGERERLLDAGMDDYL 766
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ IL
Sbjct: 767 TKPIE-EHILQQIL 779
>gi|406961810|gb|EKD88400.1| sensory box histidine kinase/response regulator, partial
[uncultured bacterium]
Length = 478
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 140/257 (54%), Gaps = 36/257 (14%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++A+R AE ++ KS+FLANMSHE+RTPM I+G+LE+L D L +EQ V + S+
Sbjct: 252 VEAKRLAEQADRAKSEFLANMSHEIRTPMNGIMGMLELLL-DTSLNSEQRDYVSTARDSA 310
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
ALL +LN +LD SK+E+G++ ++ E+DL+ +E + + N +E + ++
Sbjct: 311 EALLGILNDVLDFSKIEAGQLTIDAIEYDLRSTVEGVAHTLVSRAENKGIELACLIDKDV 370
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P V GD GR+ Q+ NL+ N+IKFTS G ++IR
Sbjct: 371 PSRVLGDAGRLRQVLINLVGNAIKFTSEGEVVIRVM------------------------ 406
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
M + + L F V DTG GI + + VFE F Q D S+TRK+GGTG
Sbjct: 407 -----------MQSKTEKTSTLRFLVSDTGIGIPLDRQKAVFERFVQADSSSTRKYGGTG 455
Query: 650 LGLSIVRTLVNKMGGEI 666
LGL+I L MGG+I
Sbjct: 456 LGLTISAQLTKMMGGDI 472
>gi|440746977|ref|ZP_20926238.1| hypothetical protein C943_0075 [Mariniradius saccharolyticus AK6]
gi|436484606|gb|ELP40582.1| hypothetical protein C943_0075 [Mariniradius saccharolyticus AK6]
Length = 1442
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 168/304 (55%), Gaps = 45/304 (14%)
Query: 395 GVSKEM-KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD-- 451
G+++++ KL+ L A+ +AE ++ KSQFL+ MSHE+RTPM A+IG+ +L D
Sbjct: 1042 GIARDITKLKEAQRELLLAKERAEQASTIKSQFLSIMSHEIRTPMNAVIGMAHLLIEDNP 1101
Query: 452 --DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
DQL N + ++ S+ LL L+N ILD +K++SGK+ELE F+L+ + ++
Sbjct: 1102 RPDQLEN-----LKTLQFSAENLLGLINDILDYTKIDSGKVELEKVSFELENVFQRILHS 1156
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+S Q ++ + ++ IP+++ GDP R+ Q+ +NL++N++KFT G+I I+ N+
Sbjct: 1157 YSYQAREKALDVIFEIDPAIPKSLLGDPVRLGQVVNNLVSNAVKFTEKGYIRIK--LSNV 1214
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
K +++++ F+ +DTG GI + K +
Sbjct: 1215 GEKK---------------------------------DRVSVRFDFEDTGIGIPEEKLDL 1241
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
VFE+F Q +TTRK+GGTGLGL+IVR LV G +IK ++ GT + S
Sbjct: 1242 VFEAFTQASAATTRKYGGTGLGLAIVRRLVQLFGSDIKAYRRQEGGTRFTFTITFARPST 1301
Query: 690 SKQI 693
+++
Sbjct: 1302 DEKV 1305
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 35/181 (19%)
Query: 922 RHQIGSSRRDQPCSSSNSSSNQK----------RILEGLRILLAEDTPLIQIVACKILEK 971
R Q G +R + + S+++K RIL+ IL+AED + QI+ K L K
Sbjct: 1282 RRQEGGTRFTFTITFARPSTDEKVSPQGNTEGLRILQDANILIAEDNIVNQIMIKKFLTK 1341
Query: 972 VGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
G V + DG +A+EA ++ F++IL+D QMP+ D
Sbjct: 1342 WGVHQVVIANDGNEAIEAFSKQ-----------------------DFNIILLDLQMPEKD 1378
Query: 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
G++ IRK + + +PI+ALTA ++ ++ VGMN Y++KP + + + + I+
Sbjct: 1379 GFQVAEYIRKLK-DPKKNQVPIIALTASSLIEVKEHLEEVGMNDYISKPFNPDHLYTKII 1437
Query: 1091 R 1091
+
Sbjct: 1438 K 1438
>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea blandensis MED297]
gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
Length = 951
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
ARR+A+ +N K++FLANMSHE+RTP+ IIG +L + LT +Q + I SS
Sbjct: 272 ARREAQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSN-LTKKQEDYISTIMSSSQV 330
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N +LD K+E+GK+ L+N +L++ +EE++ M S N+E V ++P
Sbjct: 331 LLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSLFFADVPE 390
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ DP R+ Q+ +NLI+N+IKFT+ G ++IR T
Sbjct: 391 QLVFDPLRLKQVLTNLISNAIKFTNEGSVVIR---------------------------T 423
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++QQ + NK+ + V DTG G+ +++ + +F++F Q D ST R+ GGTGLG
Sbjct: 424 MIEQQ--------QGNKVTVRVSVTDTGIGLSKTQQKALFQAFAQADSSTAREFGGTGLG 475
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L I + LV +MGG+I + K G+
Sbjct: 476 LVISKRLVEQMGGDIGLESKKDEGS 500
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 25/142 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L +D P + +LE +G V+ G +AV+ LA ++
Sbjct: 669 VLAVDDNPANLKLIVTLLESLGVEVTSASSGEEAVK-----LATDTV------------- 710
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
FDL+ MD QMP MDG AT +IR++E + R++PI+ALTAHA+ + + L G
Sbjct: 711 -----FDLVFMDIQMPSMDGMAATRQIRRAEPSN--RHVPIIALTAHALAEEREAMLEAG 763
Query: 1072 MNAYLTKPIDSERMVSTILRLT 1093
M+ YL KPID +++ T+ + T
Sbjct: 764 MDDYLAKPIDEDQLQRTLFKWT 785
>gi|427715757|ref|YP_007063751.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427348193|gb|AFY30917.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 1536
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 147/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
ARR+AE+++ KS FLANMSHE+RTPM A++G+ ++ + L EQ + I+ S A
Sbjct: 881 ARRQAESASQSKSAFLANMSHEIRTPMNAVLGMTGLM-LETPLNREQQDFMETIRISGDA 939
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+E+G+M LE FDL +EE++++ + Q + +E + ++P
Sbjct: 940 LLTLINEILDLSKLEAGEMALETLNFDLSTCVEEVLELLAPQAHSKELELAALIYPHVPT 999
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+++GD R+ QI NLI N+IKFTS G +++R
Sbjct: 1000 HLQGDASRLRQILMNLIGNAIKFTSVGEVVVRA--------------------------- 1032
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+++ Q + + F + DTG GI +F F Q D STTRK+GGTGLG
Sbjct: 1033 EVRSQTSTTVTIH--------FAITDTGLGITPEDQHQLFTPFTQVDASTTRKYGGTGLG 1084
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV MGGEI V + G+
Sbjct: 1085 LAICKQLVTLMGGEIGVESQLGEGS 1109
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 29/185 (15%)
Query: 909 SRREDLIHTMFRERHQI--GSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVAC 966
SR D I T+ + ++ G R + P + S I +RILLAED + Q VA
Sbjct: 1248 SRLLDTIMTILGSQRELTAGEVRVENP--ETVGSPTPDAIAPKIRILLAEDNLVNQKVAL 1305
Query: 967 KILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026
K LE++G + V +G + ++ LL+ P +DLILMDCQM
Sbjct: 1306 KQLERLGYSADVAGNGREVLQ---------------LLEKIP--------YDLILMDCQM 1342
Query: 1027 PKMDGYEATIEI-RKSESEHGARNIPIV-ALTAHAMNADEKKCLGVGMNAYLTKPIDSER 1084
P +DG E T EI R SES +R P+V A+TA+AM D + C+ GM+ YL+KP+ E+
Sbjct: 1343 PVLDGLETTKEIHRWSESCFASRRRPVVIAMTANAMKEDRQMCIDAGMDDYLSKPVIKEK 1402
Query: 1085 MVSTI 1089
+ + +
Sbjct: 1403 LATAL 1407
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D+IL+D QMP++DG + +I++ + NIP++ LT+ + ++ L +G AYL
Sbjct: 1185 YDVILVDMQMPEIDGMKLGEQIKQ---DAAIANIPLIMLTSTNQRDEIQRALNIGFAAYL 1241
Query: 1077 TKPIDSERMVSTILRLTKNMPSEATGTTR 1105
KP+ R++ TI+ + + G R
Sbjct: 1242 VKPVKPSRLLDTIMTILGSQRELTAGEVR 1270
>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. H13-3]
gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. H13-3]
Length = 1223
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 158/291 (54%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
LI+ V+ EMK+R E + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 641 LIIVTDVT-EMKMREEELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLA 697
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E++V +
Sbjct: 698 KSN-LDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 756
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S N+E V+ + ++ V GD GR Q+ +NL+ N++KFT GH++I
Sbjct: 757 LSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLI------- 809
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+L Q+ A ++ L V+D+G GI K ET
Sbjct: 810 ----------------------ELSAQSAEA------SETILSLRVEDSGIGIPADKLET 841
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I LV G I VV + G+ ++
Sbjct: 842 IFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEV 892
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 38/188 (20%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEG-------------LRILLAEDTPLIQIVACKILEK 971
+ S D P N +++KR + + +L+AED + QIV +IL++
Sbjct: 1052 LASGGSDAPVQPDNGPTDKKRRVVSPPTTVPDRRRPCLVDVLVAEDNDVNQIVFTQILQQ 1111
Query: 972 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031
G +V +G +AV+A + +P+ +ILMD MP M+G
Sbjct: 1112 AGLRFLIVGNGKKAVQAWE--------------EHNPA---------VILMDVSMPVMNG 1148
Query: 1032 YEATIEIRKSESEH-GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AT+ IR +E R++PI+ +TAH +AD + C+ GM+ YL+KPI E + I
Sbjct: 1149 HQATLAIRAAEQAAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILEDKIA 1208
Query: 1091 R-LTKNMP 1097
+ L MP
Sbjct: 1209 QWLGDAMP 1216
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 183/364 (50%), Gaps = 32/364 (8%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 408 FFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 467
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 468 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 524
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N +E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 525 IRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKG 584
Query: 559 HIIIR-------------------GWCENLDTSKNTAEFPT-------DRKKFGRAFRTK 592
HI ++ G E + + + T D + +F+
Sbjct: 585 HIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFK-H 643
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L + + F + + L ++DTG GI VF F Q D ST+R +GGTG+GL
Sbjct: 644 LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGL 703
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSME 712
SI + LV M G+I + + G+ +L + I PN + +T M+
Sbjct: 704 SISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMK 763
Query: 713 RMII 716
+++
Sbjct: 764 AIVV 767
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L G +IL+ +D + + VA L+
Sbjct: 885 RASMIGACLQQVLELRKTRQQHPEGSSPAT--LKSLLTGKKILVVDDNIVNRRVAAGALK 942
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ P T FD MD QMP+MD
Sbjct: 943 KFGAEVVCAESGQVAL---------------GLLQ-----IPHT--FDACFMDIQMPQMD 980
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 981 GFEATRQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1040
Query: 1086 VSTILRLTKNMP 1097
++ + K P
Sbjct: 1041 YKSVAKSFKPNP 1052
>gi|403158938|ref|XP_003319617.2| hypothetical protein PGTG_01791 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166525|gb|EFP75198.2| hypothetical protein PGTG_01791 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1635
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 170/322 (52%), Gaps = 41/322 (12%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR L + AR AE +N KS+FLANMSHE+RTPM IIG+ +I + +LT Q
Sbjct: 1074 LRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQITLAT-ELTRHQREN 1132
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + LL +++ +LDLSK+E+G+M +E F L+ + +++ +V+ N++
Sbjct: 1133 LTIVYAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTSIFDVLKSLAVKALTSNLQL 1192
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
V +++ N+P V GDP R+ Q+ +NLI N+IKFTSSGH+ + LD
Sbjct: 1193 VFEIAPNVPDFVVGDPFRMRQVITNLIGNAIKFTSSGHVGLSCKVATLDPVTG------- 1245
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+++L C V DTG GI K +F++F Q D ST
Sbjct: 1246 ------------------------EHRLEFC--VFDTGIGIKPDKLNLIFDTFCQADGST 1279
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYD-----A 696
TRK+GGTGLGL+I + LVN M G + V + + G+ + Y + S+ + ++ +
Sbjct: 1280 TRKYGGTGLGLTISKRLVNLMEGTLWVESEYNHGS--RFYFTISVRSDDDKPFENWAKKS 1337
Query: 697 DFPNTVVVLATVGSMERMIISQ 718
+P V++ S E + I Q
Sbjct: 1338 VYPQAQVIIVARESGEELQIVQ 1359
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 23/141 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILLAED + Q VA K+L+ G V VV +G AVEA +
Sbjct: 1471 KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGELAVEAATKN------------------ 1512
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+LMD MP M G EAT IRK E ++ +PI+ALTAHAM D ++C+
Sbjct: 1513 -----TYDLVLMDVSMPTMGGLEATSLIRKHEQDNHLERVPIIALTAHAMLGDRERCIDA 1567
Query: 1071 GMNAYLTKPIDSERMVSTILR 1091
GM+ Y+TKP+ + +++ R
Sbjct: 1568 GMDDYVTKPLRKADLDASMSR 1588
>gi|334340222|ref|YP_004545202.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
gi|334091576|gb|AEG59916.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
Length = 1276
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 146/271 (53%), Gaps = 32/271 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AE ++ KS+FLANMSHE+RTPM I+G E+L + L EQ +V I++
Sbjct: 532 AREIAEKASQAKSEFLANMSHEIRTPMNGILGFAEVL-AQQGLNQEQQESVKIIRQCGEQ 590
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N ILDLSK+ESGK+ LE T F L+K + E V++ NVE + + ++P
Sbjct: 591 LMDLINDILDLSKIESGKLILEETVFSLRKMIYETVNVIEPILMEKNVEMKISIDPHLPD 650
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD R+ QI +NL++N+ KFT G +
Sbjct: 651 YLKGDSFRIRQILNNLLSNAAKFTHEGCV------------------------------- 679
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++K Q + + L F V DTG GI K +FE+F Q D STTRK+GGTGLG
Sbjct: 680 EVKVQGERTLEKTDHRNFVLTFIVSDTGIGIPSDKLAEIFETFTQADGSTTRKYGGTGLG 739
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L+I R+L MGG+++V + G+ L L
Sbjct: 740 LTISRSLTELMGGQLQVQSEFKKGSQFSLTL 770
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 26/161 (16%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRR 1001
NQK + +LL ED Q + +L G V++V +G +A+ AL
Sbjct: 1045 NQKMKKGPVNVLLVEDNSFNQKLIEHLLTGDGYKVTMVENGQEALAAL------------ 1092
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
D +D++LMD QMP MDGYEAT +IR E + +P++ALTAHAM
Sbjct: 1093 -----------DQGEYDIVLMDMQMPVMDGYEATRQIRNMEK---YKKLPVIALTAHAMK 1138
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
D +KCL G + YL KP++ + ++ TI + T + E+ G
Sbjct: 1139 GDCEKCLSAGCDDYLAKPVNKDMLIKTIKKFTDSPAEESRG 1179
Score = 40.0 bits (92), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
EG+ +++ +D Q++ LEK G TV G QA L +
Sbjct: 793 EGVVLVIEDDWTTKQLIT-NYLEKAGYTVIATDHGKQA------------------LTLA 833
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
PD I++D +P + G++ ++++K+E + IP++ + + ++++
Sbjct: 834 KIYQPDA-----IILDILLPDLSGWDILVKMKKTEE---IQQIPVIVCS---VLPEKERA 882
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
+G Y+ KPI E ++S + +LT + SE T
Sbjct: 883 FSLGAVDYIEKPISEEILISRLEKLTLSRTSEDT 916
>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 752
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 151/266 (56%), Gaps = 37/266 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+++ KAE ++ KS+FLANMSHE+RTPM +IG+L +L+ + L + Q + V K S+
Sbjct: 235 ESKEKAEEASKLKSEFLANMSHEIRTPMNGVIGMLSLLEKEP-LKDHQTNFVNVAKGSAQ 293
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL L+N ILD SK+E+ K+ELE EF+L+ + E++ S + + VE +LD S
Sbjct: 294 SLLTLINDILDFSKIEADKLELEEVEFNLEALISEMISALSYKVETNQVEFILDTSQVQH 353
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R QI SNL++N+IKFTS G I+++ F
Sbjct: 354 VFVVGDPIRFRQIVSNLVSNAIKFTSQGEILVK-------------------------FS 388
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T+L + +++ + ++ DTG GI + + +F SF Q D STTR+ GGTGL
Sbjct: 389 TQL-----------DADRVCVSAQISDTGIGISELEQSRLFSSFSQVDASTTRQFGGTGL 437
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL+IV+ L M G++ V + G+
Sbjct: 438 GLAIVKKLCELMHGQVGVESEKGKGS 463
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 18/139 (12%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+LL ED + Q+VA K+L+ +G V++ +G +A++ L
Sbjct: 625 HVLLVEDNKVNQLVASKLLDNLGLKVTIANNGREAIDVLK------------------VH 666
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+T L+LMDCQMP+MDG+EAT IR+ E+ + IPI+ALTA+AM DE+ CL
Sbjct: 667 YQETDPIALVLMDCQMPEMDGFEATQRIRQGEAGTRLKRIPILALTANAMKGDEENCLNA 726
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMN YL KPI + + ++
Sbjct: 727 GMNDYLAKPIQVDALTHSL 745
>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens 5A]
gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens 5A]
Length = 1232
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 158/291 (54%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
LI+ V+ EMK+R E + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 650 LIIVTDVT-EMKMREEELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLA 706
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E++V +
Sbjct: 707 KSN-LDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 765
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S N+E V+ + ++ V GD GR Q+ +NL+ N++KFT GH++I
Sbjct: 766 LSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLI------- 818
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+L Q+ A ++ L V+D+G GI K ET
Sbjct: 819 ----------------------ELSAQSAEA------SETILSLRVEDSGIGIPADKLET 850
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I LV G I VV + G+ ++
Sbjct: 851 IFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEV 901
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 38/188 (20%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEG-------------LRILLAEDTPLIQIVACKILEK 971
+GS D P N +++KR + + +L+AED + QIV +IL++
Sbjct: 1061 LGSGGSDAPVRPDNGPTDKKRRVVSPPTMVPDRRRPCLVDVLVAEDNDVNQIVFTQILQQ 1120
Query: 972 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031
G +V +G +AV+A + +P+ +ILMD MP M+G
Sbjct: 1121 AGLRFLIVGNGKKAVQAWE--------------EHNPA---------VILMDVSMPVMNG 1157
Query: 1032 YEATIEIRKSE-SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
++AT+ IR +E + R++PI+ +TAH +AD + C+ GM+ YL+KPI E + I
Sbjct: 1158 HQATMAIRSAEQAAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISPEILEDKIA 1217
Query: 1091 R-LTKNMP 1097
+ L MP
Sbjct: 1218 QWLGDAMP 1225
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 183/364 (50%), Gaps = 32/364 (8%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 431 FFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 490
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 491 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 547
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N +E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 548 IRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKG 607
Query: 559 HIIIR-------------------GWCENLDTSKNTAEFPT-------DRKKFGRAFRTK 592
HI ++ G E + + + T D + +F+
Sbjct: 608 HIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFK-H 666
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L + + F + + L ++DTG GI VF F Q D ST+R +GGTG+GL
Sbjct: 667 LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGIGL 726
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSME 712
SI + LV M G+I + + G+ +L + I PN + +T M+
Sbjct: 727 SISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMK 786
Query: 713 RMII 716
+++
Sbjct: 787 AIVV 790
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L G +IL+ +D + + VA L+
Sbjct: 908 RASMIGACLQQVLELRKTRQQHPEGSSPAT--LKSLLTGKKILVVDDNIVNRRVAAGALK 965
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ P T FD MD QMP+MD
Sbjct: 966 KFGAEVVCAESGQVAL---------------GLLQ-----IPHT--FDACFMDIQMPQMD 1003
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 1004 GFEATRQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1063
Query: 1086 VSTILRLTKNMP 1097
++ + K P
Sbjct: 1064 YKSVAKSFKPNP 1075
>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
Length = 1618
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 152/283 (53%), Gaps = 38/283 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE + KS FLANMSHE+RTPM AIIG+ + LKS L Q+ V +I+++
Sbjct: 862 AKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSG--LNPRQHDYVSKIQQAGQ 919
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ +E F L + LE + D+ + +E V D++ ++P
Sbjct: 920 HLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAGAKGLELVCDVAADVP 979
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
N+ GD R+ QI N NN+IKFT G I I
Sbjct: 980 PNLVGDSLRLGQILINFSNNAIKFTERGEISI---------------------------- 1011
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ Q +A R L FEV DTG G+ + +FESF+Q D STTR++GGTGL
Sbjct: 1012 -AVRVQEQDAQRVR------LRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGL 1064
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
GL+I ++L MGGE+ V + G+ + L L + ++Q+
Sbjct: 1065 GLAICKSLAELMGGEVGVDSEYGKGSTFWVSLPLERGAPARQL 1107
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 27/159 (16%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P + +S + + I G ++LL ED L Q+VA ++L G V V +G +A++ L
Sbjct: 1249 PAVAPDSEALPQAI-RGAQVLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLL--- 1304
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
D +D++LMD QMP MDG AT +R ++ H ++P+
Sbjct: 1305 --------------------DGKNYDVVLMDMQMPVMDGETATRRLR-ADPRHA--DLPV 1341
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+A+TA+AM AD ++C GMN ++ KPI+ + + + R
Sbjct: 1342 IAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALAR 1380
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D V ++L+ +G V GL+A+E L R++ Q
Sbjct: 1113 LRGRRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETL----------RQATQQQ 1162
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
P + L+L+D MP MDG E IR G IP ++ +TA+ +
Sbjct: 1163 KP--------YGLLLLDWHMPGMDGVELAGHIRS----MGLAEIPQMLMVTAYGREDVMR 1210
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
G+ A L KP+++ + T+++ +N
Sbjct: 1211 AARAQGIEAVLIKPVNASVLFDTLMQPLEN 1240
>gi|449119179|ref|ZP_21755578.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
gi|449121571|ref|ZP_21757918.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448950170|gb|EMB30993.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448951105|gb|EMB31921.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
Length = 676
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 149/263 (56%), Gaps = 30/263 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AE +N+ +S FLAN+SHE+RTP+ II ++E++ ++ L EQ Q+ S+
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIDMMELI-NETNLDEEQSEYTRQVNFSAEV 191
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+ESG M +E T F+L +E+ VD+ S++ +E V+D+SD IP
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPD 251
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ Q+ N + N++KFT +G++ + +N ++ P K F
Sbjct: 252 FIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKL----VFENNSDDPYAAKHF------ 301
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV DTG G++ + +F SF QG+ + RK+GGTGLG
Sbjct: 302 ------------------FILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLG 343
Query: 652 LSIVRTLVNKMGGEIKVVKKNSP 674
L+I + ++ M G+I +K N P
Sbjct: 344 LAISKNIITMMKGQIG-IKDNIP 365
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D P+ Q + ILEK VS DG +A++
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAID--------------------- 596
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T + FD+I MD QMP ++GYEAT +R + PI+A TA + + + C
Sbjct: 597 --TASSEHFDIIFMDIQMPGINGYEATQILRGK-----GYSRPIIACTAGSQDNERNLCK 649
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
+G+N + KP + +++ +
Sbjct: 650 SMGLNDIIKKPFNKKQLFEMV 670
>gi|421128859|ref|ZP_15589070.1| GHKL domain protein [Leptospira kirschneri str. 2008720114]
gi|410359971|gb|EKP07011.1| GHKL domain protein [Leptospira kirschneri str. 2008720114]
Length = 838
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+++++ L AR AE +N KSQFLA MSHE+RTP+ IIGL+E KS N+Q
Sbjct: 444 ELEVQSRTRELLKARDDAEFANKIKSQFLAAMSHEIRTPLNGIIGLIEQFKSTPLDENQQ 503
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ I+KS LL+++N ILD SK+E+ K++LE EF ++ +EE + +F Q +
Sbjct: 504 HIRNL-IQKSGETLLKIINDILDFSKLEADKIDLELQEFCWKEIVEETIGIFLYQATQKG 562
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ QI SNLI+N+IKFT SG I IR + E ++T
Sbjct: 563 LVLSIDYSPDFIDKSVGDKRRIVQILSNLISNAIKFTDSGKIQIRAFSEKIET------- 615
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 616 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 646
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA-SSESKQIYDAD 697
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ Y +
Sbjct: 647 SSISRKYGGTGLGLAISKKLVELMSGKIHVFQNKSKGSTFEFTVLLSEFVSKDHPTYFLE 706
Query: 698 F-------PNTVVVLATVGSMERMIISQWLRKKKV 725
PNT +++A S ++S L+K K+
Sbjct: 707 TTDLSSLSPNTYILIAEDDSTNIFLLSGILKKLKI 741
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 719 ILIAEDDSTNIFLLSGILKKLKIRFELAKDGLEAITKVR--------------------- 757
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 758 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 813
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 814 MSDFLGKPYYKKDIEQMI 831
>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
autotrophicum HRM2]
Length = 1316
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 36/254 (14%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE +N K +FLANMSHE+RTPM IIG+ +L D QLT+EQ ++ S +LLR
Sbjct: 780 EAELANLAKGEFLANMSHEIRTPMNGIIGMTGLL-MDTQLTDEQRRYARIVQASGESLLR 838
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+GK++LE +F+LQ + L ++Q +E + L ++P +R
Sbjct: 839 IINEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIEFICTLDPDVPLGLR 898
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GD GR+ QI +NL N++KFTS+G + I K E TD+
Sbjct: 899 GDSGRLGQILTNLAGNAVKFTSTGKVSI----------KVKVEHETDK------------ 936
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ L F V DTG GI + K +F F Q D STTR+ GGTGLGL+I
Sbjct: 937 -------------DVILYFSVKDTGIGIQREKLGMIFNKFTQADESTTREFGGTGLGLAI 983
Query: 655 VRTLVNKMGGEIKV 668
+ L MGG + V
Sbjct: 984 SKQLTEMMGGRMGV 997
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 28/162 (17%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+GLRIL+ ED Q+VA IL+K+G V +G +A+EAL+
Sbjct: 1054 KGLRILVVEDNITNQLVALGILKKMGFAAHAVTNGAKAIEALD----------------- 1096
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
+DL+ MD QMP M+G +AT IR +S+ +IPIVA+TA+AM D K C
Sbjct: 1097 -----GATHYDLVFMDMQMPVMNGLDATRAIRDPDSKVYDHDIPIVAMTANAMEEDRKHC 1151
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRLTKNM------PSEATGT 1103
L GMN YL+KPI+ +V + + N+ PSE G+
Sbjct: 1152 LKAGMNDYLSKPINPSALVKVLEKWLVNLEKDEISPSEDMGS 1193
>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
Length = 1509
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 167/333 (50%), Gaps = 52/333 (15%)
Query: 393 TNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
T + +E+ R HL A R+ +++N KSQFLANMSHE+RTPM +IG+ +L
Sbjct: 832 TAELEQELAERKRAQEHLRIANRQVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLLDT 891
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
D L EQ ++ S ALL L+N +LD SK+E+GK+ELE +F+L ++E+ +M +
Sbjct: 892 D-LNPEQRRYAEAVRTSGEALLTLINDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEMLA 950
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
++ N+E +L + P + GDP R QI NL++N+IKFT G + +R
Sbjct: 951 IRAHEKNLELILQIDPQTPWMLHGDPTRFRQILVNLVSNAIKFTHEGEVTLR-------- 1002
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
D+ + L EV DTG GI + + +F
Sbjct: 1003 ----------------------------ITPVASDSGIMLRCEVQDTGIGIPEERLGNLF 1034
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG---TLMQLYLLLGASS 688
F Q D STTR +GG+GLGLSI + LV +GG+I V +++PG T A++
Sbjct: 1035 SPFTQLDGSTTRTYGGSGLGLSISKQLVRMLGGKIGV--RSTPGVGSTFWFTAAFHAAAT 1092
Query: 689 ESKQIYDADF---------PNTVVVLATVGSME 712
Q+ A PNT V A VG +E
Sbjct: 1093 SQPQLDPAPLAGIHILIIDPNTRVRRALVGQLE 1125
Score = 103 bits (256), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 24/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+AED P+ Q VA +LEK+G V +G + + AL
Sbjct: 1247 VRVLVAEDAPINQDVALAMLEKLGCRADAVANGAEVLTAL-------------------- 1286
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+T +DL+LMDCQMP MDGYEAT IR S +PI+A+TA+A+ D +KCL
Sbjct: 1287 ---ETIPYDLVLMDCQMPVMDGYEATRRIRSSNRVLNP-GVPIIAMTAYALAGDREKCLA 1342
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ Y+ KPID++ + I
Sbjct: 1343 CGMDDYVPKPIDAQEIARII 1362
>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 882
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 356 NRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 412
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F +
Sbjct: 413 LSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSK 472
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E + L +NIP V D R+ QI +NL++N++KFT G+I++ D S
Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILV-------DVSY 525
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
A E + +L F + D+G GI++ K T+FE
Sbjct: 526 EEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFEP 558
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 559 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 601
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 760 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 800
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 801 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 857
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 858 GMDAYLPKPYKSNQL 872
>gi|375337642|ref|ZP_09778986.1| hybrid sensory histidine kinase BarA [Succinivibrionaceae bacterium
WG-1]
Length = 886
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 166/347 (47%), Gaps = 64/347 (18%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
KL + + DA KAE ++ KS+FLANMSHELRTP+ IIG + L L+ EQ
Sbjct: 294 KLEKQALELKDANFKAEDASKIKSEFLANMSHELRTPLNGIIGFTKQLYKS-TLSTEQVD 352
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
+ I++S+ ALL ++N ILD SK+E+ K+ EN F L+ + + + + N +VE
Sbjct: 353 FLATIERSANALLSIVNNILDFSKLEANKLSFENISFSLRTSCYDTLKLLAGLTINKDVE 412
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
D+ N+P +V GDP R QI +NLI N+IKFT G + I K +++ P+
Sbjct: 413 LAFDIDKNVPDSVIGDPIRFQQIITNLIGNAIKFTPKGGVAIH--------IKQSSKQPS 464
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQG 637
D+ +LC F + DTG GI + K + +F +F Q
Sbjct: 465 DK---------------------------SLCKVEFSIQDTGIGISKDKQKNLFIAFSQA 497
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD 697
D S RK+GGTGLGL I + L+ + G IK+ + GT L E
Sbjct: 498 DSSINRKYGGTGLGLVITKHLIEQYDGSIKLESQEGMGTTFTFTLNFKKGKEEP------ 551
Query: 698 FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW--HGLTQILRE 742
+ +Q L KKK+ ET+ W + QIL +
Sbjct: 552 -----------------VYTQKLIKKKIIVSETNTWVRASICQILEQ 581
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
F+LI MD QMP MDG A +I+K+ + N PI+A++A + +++KK + GM Y
Sbjct: 757 EFNLIFMDIQMPIMDGLSAIKQIKKTAANA---NTPIIAVSALVIESEQKKFIEEGMADY 813
Query: 1076 LTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
L KP+D E+ + I+ +PS+ + + +
Sbjct: 814 LAKPLD-EKQLKQIVEKYCGLPSDNSASNQ 842
>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
Length = 761
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 167/335 (49%), Gaps = 45/335 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L +T V E +LR+ AR +AEA+N KS FLANMSHE+RTPM ++G+ E+L
Sbjct: 190 LDITATVHYEEELRS-------ARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELL- 241
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
SD LT EQ IK S ALL ++N +LD SK+E+ K+ L FDL+ + E+V +
Sbjct: 242 SDTTLTEEQRLYANTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEACMHEVVML 301
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+ + ++D +P N GDPGR+ QI +NLI N+IKFT+ GH+ R
Sbjct: 302 LQANARDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEGHVTAR------ 355
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+ EDN + L ++D+G GI K +
Sbjct: 356 ----------------------------VTGVPHPEDNTVMLHISIEDSGIGIPDDKIQH 387
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
+F F Q + T R+ GTGLGL+I L+ M GEI V + G+ L L ++
Sbjct: 388 IFGEFNQVEDETNRQFEGTGLGLAITERLIKLMDGEIWVESQLGKGSCFGFRLPL-VVAD 446
Query: 690 SKQIYDADFPNTVVVLATVGSME--RMIISQWLRK 722
Q+ + P + + V M+ R I+++ L++
Sbjct: 447 GSQVNAPELPENLNCVMIVDDMDINREILNRQLQR 481
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 27/152 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L +R+L AED Q+V K+++ + + +GL+AVE
Sbjct: 621 LRRMRVLAAEDNRTNQLVFRKMVKDMNIDLRFAGNGLEAVELYQSF-------------- 666
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ D+I MD MPKMDG EAT IR+ E E+G R + IVALTAHAM+ D +
Sbjct: 667 ---------KPDMIFMDISMPKMDGKEATQAIRELEKENG-RRVQIVALTAHAMDGDSEG 716
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
L G++ YLTKP+ R R+ KNMP+
Sbjct: 717 ILAAGLDDYLTKPL---RKSVIHDRIMKNMPT 745
>gi|428773834|ref|YP_007165622.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428688113|gb|AFZ47973.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 697
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 157/289 (54%), Gaps = 29/289 (10%)
Query: 379 VCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPM 438
+ +L+ G +L GV+ +++ I AR++AE +NN KSQFLA MSHE+RTP+
Sbjct: 237 LVVLIAGLTISWLLVWGVNSLLEVSQRNILLEKARKEAEQANNAKSQFLAMMSHEIRTPL 296
Query: 439 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
+ G+L +LKS L +EQ + I+ SS +LL ++N ILD SK+ESGK+EL +F+
Sbjct: 297 NGLFGILNLLKST-PLNSEQKDFIQTIEDSSKSLLLIINDILDFSKIESGKLELVIEDFN 355
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
LQK ++ ++D+ S Q + ++ L + P N+RGD GR+ Q+ NLI+N++KFT G
Sbjct: 356 LQKCIKNVIDLLSFQAKSQGLDLKLFWDSDTPINLRGDVGRLRQVLINLISNALKFTEEG 415
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC-FEVDD 617
+ + ++ L E NK L F V D
Sbjct: 416 EVTV----------------TVSSRRLQGVLDGTL-----------EGNKDYLIHFAVKD 448
Query: 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
TG GI + + +F F Q D + R++GGTGLGL I R L MGG+I
Sbjct: 449 TGIGIAKENQDKLFNPFVQADGAINRRYGGTGLGLVISRRLARLMGGDI 497
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 25/145 (17%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
+N +S + + L+IL+AED P+ Q VA +L+K+G + +GL+ ++A+ +
Sbjct: 560 NNHTSPSQTLENSLKILIAEDNPVNQKVALLLLKKLGYYPHIAINGLEVLDAVKK----- 614
Query: 997 SSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1056
+D+ILMD QMP+MDG AT IR + I+A+T
Sbjct: 615 ------------------DCYDVILMDMQMPEMDGLSATEWIRINVD--STMQPYIIAMT 654
Query: 1057 AHAMNADEKKCLGVGMNAYLTKPID 1081
A+A ADEK+C GM+ Y++KP +
Sbjct: 655 ANATKADEKRCFEAGMDDYISKPFE 679
>gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 878
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 352 NRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 408
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F +
Sbjct: 409 LSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSK 468
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E + L +NIP V D R+ QI +NL++N++KFT G+I++ D S
Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYILV-------DVSY 521
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
A E + +L F + D+G GI++ K T+FE
Sbjct: 522 EEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFEP 554
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 555 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 597
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 797 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|410618787|ref|ZP_11329722.1| sensory box histidine kinase/response regulator [Glaciecola polaris
LMG 21857]
gi|410161738|dbj|GAC33860.1| sensory box histidine kinase/response regulator [Glaciecola polaris
LMG 21857]
Length = 569
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 160/290 (55%), Gaps = 37/290 (12%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
V K+++L E + ++A+A+ KS FLANMSHE+RTPM +IG++E++ S +L
Sbjct: 170 VEKQLELEQERDLAIQHEQEAKAATEAKSAFLANMSHEIRTPMNGVIGMIELI-SQTKLV 228
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
NEQ + + K+S+ +L+ ++N +LD SK+E G++ +E EFDL+K EL+
Sbjct: 229 NEQKNYIATAKRSAESLMIIINDVLDFSKIEVGELTIELVEFDLEKFFTELIHDQHFHAQ 288
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
N ++ L +++ NV GDP R+ Q+ +NL++N+IKFT SG+I+++
Sbjct: 289 NKGLKLELVKNESAKTNVLGDPYRITQVMNNLLSNAIKFTESGNIVVQ------------ 336
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
+ + +ED +L + + DTG G+ ++ +F+SF
Sbjct: 337 ----------------------YDLVTLKEDLRLTVV--ITDTGIGVSEAALPFLFDSFS 372
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
Q D STTRK GGTGLGLSI + L M G+I V + G+ + + L
Sbjct: 373 QADTSTTRKFGGTGLGLSITKQLCELMDGDISVKSELGKGSTFEFSIRLA 422
Score = 112 bits (281), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 91/167 (54%), Gaps = 22/167 (13%)
Query: 927 SSRRDQPCSS--SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
S R +P S+ + + + LR+LL ED + Q V IL+ + V V DGL+
Sbjct: 418 SIRLARPISTLVTKEKPHTTQSFSNLRVLLVEDNFINQEVMLAILKGLEVEVFVANDGLE 477
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
A+ L S Q +P FDLILMDCQMP M GYEAT IRK ++
Sbjct: 478 ALSML------------SYSQATP--------FDLILMDCQMPNMHGYEATQRIRKGDAG 517
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
NIPI ALTA+ MN++ +KCL GMN YLTKPID + + + +L+
Sbjct: 518 ELFINIPIAALTANVMNSEREKCLDAGMNEYLTKPIDIDDLKTVLLK 564
>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
Length = 760
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 148/282 (52%), Gaps = 37/282 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DAR+ A+ +N KS+FLANMSHE+RTPM +IG+ E++ D L ++Q I KS
Sbjct: 228 DARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETD-LDDDQKMYAETISKSGS 286
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N IL+ SK+E+GKMEL+ F+LQ +E++V + S + + NVE L +P
Sbjct: 287 ALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPGLP 346
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GD GR+ QI +N+ N++KFTS+G++ I + S +TA +D
Sbjct: 347 EFFEGDVGRIRQILTNIAGNAVKFTSAGYVYI-------EVSGHTAGGYSD--------- 390
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
L V DTG GI + ++F +FEQ D + TR GTGL
Sbjct: 391 --------------------LRISVKDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGL 430
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
GL+I L+ MGG + V G+ + L L +Q
Sbjct: 431 GLAISTRLLGMMGGTVSVTSVLGEGSTFTVELPLKVREHQRQ 472
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED Q+V ++L+ V V +G AV+
Sbjct: 630 LKLLLAEDNKTNQLVVTRMLKSAPIEVIVASNGEDAVDLFK------------------- 670
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
R D++LMD MP+ DG EAT +IR E+ P+VALTA+A+ + +++CL
Sbjct: 671 ----AHRPDIVLMDMMMPQKDGIEATGDIRALEASRNWPRCPVVALTANALQSHKEQCLA 726
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ +L+KPI + ++ + + P + TGT
Sbjct: 727 AGMDDFLSKPIKKQELLDAVTKWVDVDPVQMTGT 760
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
LEGL +L+ +D L +I+ + L+ G V G A+E L L A R
Sbjct: 480 LEGLNVLVVDDLELNRIILNERLDTWGVNTVAVASGDAALETL---LDARHEGRS----- 531
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD+IL D QMP MDG+E IR ++PIV L++ D+
Sbjct: 532 ----------FDIILQDFQMPGMDGHELARRIRDIPE---YVDLPIVILSSVENTIDQYT 578
Query: 1067 CLGVGMNAYLTKPIDSERM 1085
+G KP+ + ++
Sbjct: 579 RERLGRCEVALKPVRASQL 597
>gi|428318926|ref|YP_007116808.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242606|gb|AFZ08392.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 856
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 159/290 (54%), Gaps = 18/290 (6%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS F+ANMSHELRTP+ +I+G +I++ LT E + I++S LL L+N +
Sbjct: 319 NKAKSTFIANMSHELRTPLNSILGFAQIMEPSPDLTVENRENMRIIRRSGEHLLTLINEV 378
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+E+G+M L FDL + L++L DMF ++ N ++ ++P+ VR D +
Sbjct: 379 LDLSKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVHNEELQLHFQRDADVPQYVRTDDIK 438
Query: 540 VFQIFSNLINNSIKFTSSGHIIIR-------GWCENLDTSKNTAEFPTDR--KKFGRAFR 590
+ Q+ NL++N+IKFT +G II+R G+ + LD+ K A F T R + F R
Sbjct: 439 LRQVLINLLSNAIKFTQTGEIILRVIKLEKSGFLDLLDSPK--ACFDTTRSIRDFSRTSS 496
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
K + ++ L FE++DTG GI + +F++F Q S + GTGL
Sbjct: 497 DFAKVECSDEAEDSTVPDFFLLFEIEDTGVGIASEELGNIFKAFVQT-ASGQKIQKGTGL 555
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GL I R V MGGEI V + GT + + +GA +Y AD P+
Sbjct: 556 GLKISRQFVRLMGGEIVVESQLELGTTFKFEIPVGA------VYAADIPD 599
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKS--------------ESEHGARNIP-IVALTAHAMNAD 1063
LILMD +MP MDGYEAT +I+ + IP I+ALTA +
Sbjct: 662 LILMDVRMPVMDGYEATKQIKARIKQREQEQQEKEEMNLDEPESPIPKIIALTASTIEGR 721
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ L VG + +++KP + TI
Sbjct: 722 QAFALLVGCDDFISKPFRKTDIFDTI 747
>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1126
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 153/284 (53%), Gaps = 38/284 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+K R E + HL +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L + L Q
Sbjct: 568 ELKSREEELRHLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTN-LDTRQ 624
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I KS ALL ++N ILD SK+++G+M+L FD+ + +E++ + S + N
Sbjct: 625 KTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKN 684
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E ++ + ++P V GD GR QI +NL+ N++KFT GH+ + D A
Sbjct: 685 IELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFV-------DVGFEAA-- 735
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++ ++DTG GI K E+VF+ F Q D
Sbjct: 736 --------------------------AGGEIMASIRIEDTGIGIPAEKLESVFDKFSQVD 769
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
S+TR+H GTGLGL+I LV+ GG + V + G++ + L
Sbjct: 770 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTVNL 813
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 24/147 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q+R E + +L+AED + QIV +IL+ G + VV +G +AV A R
Sbjct: 988 QQRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERH---------- 1037
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
PR +I+MD MP M+G++AT IR+ E G R +PI+ +TAHA+ +
Sbjct: 1038 -----------RPR--IIMMDVSMPVMNGHQATQTIREREKGQGHR-VPIIGVTAHALES 1083
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTI 1089
D + CL GM+ Y++KPI E + I
Sbjct: 1084 DRELCLDAGMDDYMSKPISPELLEEKI 1110
>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1494
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 22/258 (8%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE ++ KS+FLA MSHE+RTPM A+IG+ +L D +LT EQ V I+ S
Sbjct: 720 EAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPEQRDFVETIRTSGD 778
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK+ELE F L+ LEE +++ S + + +E + + P
Sbjct: 779 ALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTP 838
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + GD R+ Q+ NL++N+IKFTS G +I+ + D K D KKF +
Sbjct: 839 KTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK-------DVKKFDDS-- 889
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+F E + + L FEV DTG GI + + +F++F Q D STTR++GGTGL
Sbjct: 890 -----------DFTESHYV-LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGL 937
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L M G++ V
Sbjct: 938 GLAISQRLSQLMNGKMWV 955
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 26/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED Q VA K+LE++G + +GL+ ++ALNR
Sbjct: 1179 LRILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALNRQ----------------- 1221
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEI---RKSESEHGARNIPIVALTAHAMNADEKK 1066
++D+ILMD QMP+MDG E + I S+ G R I+A+TA+AM D +
Sbjct: 1222 ------QYDVILMDVQMPEMDGLETSKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREM 1275
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ Y+TKP+ E + + +
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
>gi|392308552|ref|ZP_10271086.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea
NCIMB 1889]
Length = 1349
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 171/306 (55%), Gaps = 41/306 (13%)
Query: 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMS 431
+++ A+ C I+ L V++ ++ +LI A+ +A+ + K +FLANMS
Sbjct: 559 VVVYEATFCNADGAVAGIVGLILDVTERKEMEQQLII---AKEQADQMSTAKGEFLANMS 615
Query: 432 HELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 490
HE+RTPM AIIG+ + LK+D L N+Q V +I +++ LL ++N ILD SK+ESGKM
Sbjct: 616 HEIRTPMNAIIGMSHLALKTD--LDNQQLGYVTKIDQAAKNLLGIINDILDFSKIESGKM 673
Query: 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINN 550
+E+ F L + + + + +V+ N+E +LD+S ++P ++ GDP R+ QI NL N
Sbjct: 674 TVESVNFLLDEVTDNVATVNAVKAQEKNLELLLDVSPDVPISLIGDPLRLSQILINLCGN 733
Query: 551 SIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610
+IKFT +G I++ +T L+Q ++N +
Sbjct: 734 AIKFTETGEIVV-------------------------GVKT-LEQNSDN---------VT 758
Query: 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVK 670
L F V D+G G+ + + +FE+F Q D S TRK+GGTGLGLSI + LV MGG+I V
Sbjct: 759 LRFSVKDSGIGLSKEQQAKLFEAFSQADGSITRKYGGTGLGLSISKNLVELMGGKIGVNS 818
Query: 671 KNSPGT 676
+ G+
Sbjct: 819 EVGKGS 824
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED Q VA ++L+ V +++ GL+AV +
Sbjct: 994 RVLLVEDNITNQEVAYEMLQSVNLNITIANHGLEAVNMVKEQ------------------ 1035
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FDL+LMD QMP MDG AT EIRKS+S +PI+A+TA+AM D KC
Sbjct: 1036 -----DFDLVLMDMQMPVMDGLTATREIRKSKSFTA---LPIIAMTANAMQEDVDKCTDA 1087
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GMN ++ KPI+ M++TI
Sbjct: 1088 GMNGHIAKPINFNTMINTI 1106
>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1771
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 39/307 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AE + KS+FLANMSHE+RTPM +IG+ +L D +L EQ V ++ S ALL
Sbjct: 1120 RAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLL-LDTELNEEQRHYVETVQASGEALLE 1178
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+GK+ELE +FDL L+ M S++ + +E + ++P +
Sbjct: 1179 IINDILDFSKIEAGKLELEMLDFDLHNVLDSFAAMLSIKAHDKGLEFICAADPDVPAYIS 1238
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ QI +NL N++KFT G +++R E + NT
Sbjct: 1239 GDPGRLQQILTNLAGNAVKFTHLGEVVVRVTRE---SETNT------------------- 1276
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
++ L F V DTG GI + K +F F Q D STTR++ GTGLGL+I
Sbjct: 1277 -------------EVLLRFSVKDTGIGIAEDKIGLLFNQFYQIDASTTRQYSGTGLGLAI 1323
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES--KQIYDADFPNTVVVLATVGSME 712
+ LV MGG I V G+ L + K++ AD + +++ +
Sbjct: 1324 SKQLVKMMGGNIGVKSNEGKGSEFWFTLRFAKRPDGAIKKLLPADIQSARILVVDDNATN 1383
Query: 713 R-MIISQ 718
R ++ISQ
Sbjct: 1384 REILISQ 1390
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 25/152 (16%)
Query: 936 SSNSSSN--QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML 993
SSN + N +R +RILLAED + Q VA +L+K+G V +G +A++AL +
Sbjct: 1504 SSNVNENVVPQRHTNNVRILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEALKALEMI- 1562
Query: 994 AAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053
+DL+LMD QMP+MDG AT IR S S +++PI+
Sbjct: 1563 ----------------------PYDLVLMDVQMPEMDGLAATRLIRYSGSAVLNKDVPII 1600
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
A+TAHAM D ++ + GM+ Y++KP+ E +
Sbjct: 1601 AMTAHAMKGDRERFIESGMDDYISKPVSMEAL 1632
>gi|224130996|ref|XP_002320976.1| predicted protein [Populus trichocarpa]
gi|222861749|gb|EEE99291.1| predicted protein [Populus trichocarpa]
Length = 1130
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 198/713 (27%), Positives = 321/713 (45%), Gaps = 97/713 (13%)
Query: 1 MLAILIGLL----TVLTWHFTRV-YTTKSLDTLAYGLRYELLQRPLLRMWNIVNSTAEIT 55
+ ++IG+L V+ W + + + K +D A+ ++ LL + NI I
Sbjct: 15 FIILVIGVLLLPCVVVPWWYNMIKHMKKHMDFNAHVVQSGLLSE----IENIAKYLHPIN 70
Query: 56 AAQVKLSEYVIKRYNKPATQAEQIQLYEVMRDVTWAMFASRKALNAIT-INYKNGFVQAF 114
++ + L++ + N ++ Y+V V ++F + + I+ I+Y F
Sbjct: 71 SSAINLAKVMSSSIN-----GSKLSSYDVENKVAPSLFQAFSIIPFISQISYIGLGGLFF 125
Query: 115 HRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPIT 174
+ N TF +YS N +S E N S WYR+P+D T
Sbjct: 126 SYYYEGNQTFAMYS---------------NSTASNER--------NFS--WYRQPVDSDT 160
Query: 175 GEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSI 234
G G A P N + I Q + + S + ++ DP N
Sbjct: 161 GRVYGDAVKSLPFIKTNASWIEQALNSSQGYASFESGWNDAQ---------DPLFLNTVS 211
Query: 235 VAVVGVTTALSSVGQLMKEL--VEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVK 292
+ G + S L L VE++ G +YL +Q G +L L N+ T
Sbjct: 212 LRGQGALSLGFSAKALTSFLNNVELYGGSLYLATQSGKVLVGG-----LPNTQT------ 260
Query: 293 AVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHV-------QNAKLGHKQYYMD--TFFLNL 343
V +N V S Y +K+ + HV N KL Y+ + +
Sbjct: 261 -VIKENSV---------SLYMTKLNGDQIDHVGNVSCMPNNGKLEDSVLYLGEAKYRVFC 310
Query: 344 KRLPIVGV-----IIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSK 398
R+ IVGV + P + + +LI+ I I + IL++ +
Sbjct: 311 SRVEIVGVQSVYALAFPYNGLASSVNRSIKISLILFIIMIAAIFISIVSFILLVVRSARR 370
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM L + LI ++A ++AE + KS A SH++R +A I GL+EI ++ + +E
Sbjct: 371 EMHLCSTLIKQMEATQQAERKSMNKSLAFATASHDIRAALAGITGLIEICYAEVRAGSEL 430
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ + Q+ + L+ LLN ILD SK+E+GKM+LE EFDL K LE+ VD++
Sbjct: 431 DTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPVGMKKG 490
Query: 519 VETVLDLSD-NIPRN--VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
V+ VLD D +I ++ V+GD G++ Q+ NL++N++KFT GH+ +R W + S
Sbjct: 491 VDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTFEGHVSVRAWTQK--PSLEN 548
Query: 576 AEFPTDRKKFGRAFRTKLKQQAN--NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+++ R F + NAM ++ + + FEV+DTG GI + K ++VFE+
Sbjct: 549 KIMASNQNGLWRCFSCLFSKNKKEFNAMKPKQSS-MEFVFEVNDTGKGIPKEKQKSVFEN 607
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS--PGTLMQLYLLL 684
F Q T GGTGLGL IV++LV MGGEI +V K + GT + + L
Sbjct: 608 FVQ-VKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGEKGTCFKFNVFL 659
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 11/155 (7%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
S ++ + L GL+ L+A+D + + V IL+ GATV V +G +A + + L +
Sbjct: 982 SRHKGKSLSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEEAFQLVRIGLHNQREH 1041
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1059
S++ P +D ILMDC+MPKMDG EAT +IRK E +G +IPI+A +A
Sbjct: 1042 SHSIV---------LP-YDYILMDCEMPKMDGCEATRQIRKEEKFYGV-HIPILAFSADN 1090
Query: 1060 MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
+ KK G + + K I+ E++ TI + +
Sbjct: 1091 SGGEGKKMEEAGTDGRVNKKINMEQLEETIRNIQR 1125
>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
Length = 1224
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 163/298 (54%), Gaps = 45/298 (15%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N KS FLANMSHE+RTPM AIIG+ + LK+D LT Q + + ++K SS LL L+N
Sbjct: 477 NQAKSDFLANMSHEIRTPMNAIIGMSYLALKTD--LTKAQRNYIHKVKLSSDTLLGLIND 534
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+GK+++EN +F L+ L+ + ++ ++ S +E ++ + ++P N+ GDP
Sbjct: 535 ILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNLIGDPL 594
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI NL NN++KFT G + I S AE
Sbjct: 595 RLGQILINLSNNAVKFTEKGEVKI---------SILVAE--------------------- 624
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
R + + L F V D+G G+ Q + + +F F Q D STTRK+GGTGLGL+I + L
Sbjct: 625 -----RHGDDIKLKFSVSDSGIGMTQEQADKLFNKFTQADSSTTRKYGGTGLGLAISKEL 679
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMII 716
MGG+I+V + G+ + S ++ + N +VV A++ ++ +++
Sbjct: 680 SQLMGGDIQVSTELGKGSTFSFTI-------STRVSHSITQNRIVVPASINHLKVLVV 730
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 25/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ILL ED + Q +A ++LE V+V +G QA+E ++ A G
Sbjct: 874 LAGANILLVEDNEINQELATELLEGQQIKVTVAENGQQAIELYHKATA----------DG 923
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI--PIVALTAHAMNADE 1064
+P FD ILMDCQMP MDGYEAT IR H +++ PI+A+TA+ M D+
Sbjct: 924 AP--------FDGILMDCQMPVMDGYEATQYIR-----HEIKDVKTPIIAMTANVMERDK 970
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTI 1089
+K L GM+ + KPID M +T+
Sbjct: 971 EKALSSGMSDIIAKPIDVGSMFATL 995
>gi|444376474|ref|ZP_21175718.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
gi|443679452|gb|ELT86108.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
Length = 914
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 143/256 (55%), Gaps = 38/256 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A++ A+ + KS+FLANMSHELRTP+ +IG ++LK+ L++ Q + I+KS+
Sbjct: 276 AKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--HLSSSQQDYLQTIEKSAN 333
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD + LEE++ + + +E L + IP
Sbjct: 334 NLLTIINDILDFSKLEAGKLLLENIPFDFEDSLEEVMRLLAPMAHEKGLELNLRIDPRIP 393
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NLI N+ KFT GHI +
Sbjct: 394 AGVIGDPLRIQQVLTNLIGNATKFTERGHI---------------------------SVS 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+LKQQ D +L L F + DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 VELKQQ--------RDERLELQFVIRDTGIGISERQQSQLFQAFRQADASISRRYGGTGL 478
Query: 651 GLSIVRTLVNKMGGEI 666
GL I + LV +MGG+I
Sbjct: 479 GLVITQKLVQQMGGDI 494
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLILMD QMP+MDG A EIRK+ ++ P+VA+TAHAM + ++ L GM+ YL
Sbjct: 706 FDLILMDIQMPEMDGVTACQEIRKTPLN---QHTPVVAVTAHAMTGERERLLNEGMDDYL 762
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 763 TKPIE-EHILEQVL 775
>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 1616
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 154/282 (54%), Gaps = 38/282 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE + KS FLANMSHE+RTPM AIIG+ + LK+ +LT Q+ V +I+ +
Sbjct: 875 AKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKT--ELTPRQHDYVKKIQSAGQ 932
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ +E+T+F+L K L+ + ++ + + ++E V D+ +P
Sbjct: 933 HLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEVP 992
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R + GD R+ QI N NN++KFT +G I I
Sbjct: 993 RTLVGDSLRLGQILINYANNAVKFTENGEIDII--------------------------- 1025
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++K+ R + ++ L F V DTG GI + +F+SFEQ D STTRK GGTGL
Sbjct: 1026 ARVKE--------RSETEVLLYFAVRDTGIGITAEQAARLFQSFEQADTSTTRKFGGTGL 1077
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
GL+I + L MGGE+ V + G+ +G + K+
Sbjct: 1078 GLAISKRLAELMGGEVGVESEYGKGSTFWFTARMGIGTVRKR 1119
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 30/170 (17%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
+SS + G RILL ED L Q VA ++L G V V DG A+ + R
Sbjct: 1267 SSSEMHLETIRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNA---- 1322
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK-SESEHGARNIPIVALT 1056
+D++LMD QMP MDG AT EIR+ + +H +PIVA+T
Sbjct: 1323 -------------------YDMVLMDMQMPVMDGVAATREIRRLGQFDH----LPIVAMT 1359
Query: 1057 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT--KNMPSEATGTT 1104
A+AM D +CL GMN ++TKPID +++ + +LR ++ P+ A G +
Sbjct: 1360 ANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWIAPRHSPAAAHGAS 1409
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
F R IG+ R+ + S + L G R+L+ +D + V ++ + V+
Sbjct: 1107 FTARMGIGTVRKRRLLPSPD--------LRGRRVLVVDDNDNARTVLADLMAGMTFQVTT 1158
Query: 979 VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEI 1038
GL+AV+ + +R+ + G+P ++++L+D +MP MDG E +
Sbjct: 1159 RASGLEAVDEV----------KRAAMAGTP--------YEIVLLDWRMPGMDGIETAHHL 1200
Query: 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
+ R ++ +TA+ G+ L KP+ + + TI+RL P+
Sbjct: 1201 MALGLDPAPR---LLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIMRLFGCQPA 1257
Query: 1099 E 1099
E
Sbjct: 1258 E 1258
>gi|428772393|ref|YP_007164181.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686672|gb|AFZ46532.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1402
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 158/280 (56%), Gaps = 40/280 (14%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+T+ V E +LR A+ +AEA+N KSQFLA MSHE+RTPM A+IG+ +L D
Sbjct: 697 ITDKVKVEQELRI-------AKEQAEAANQAKSQFLATMSHEIRTPMNAVIGMTGLLL-D 748
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
+LT EQ I+ SS +LL ++N ILD SK+ESGK+ELE F L + +EE +D+ +
Sbjct: 749 TELTPEQQEFTEIIRTSSDSLLSIINDILDFSKIESGKLELEQQPFSLYQVIEESLDLLA 808
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ S N+E V L +I ++ GD R+ Q+ NL++N++KFT +G +I+
Sbjct: 809 PKASQKNIELVYFLDPDISPSIIGDVTRLRQVLVNLLSNAVKFTPTGEVIL--------- 859
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
D G + R N L F ++DTG GI +++ + +F
Sbjct: 860 -----SVTIDSHSIG---------------DRRYSN---LLFVIEDTGIGIPRNRMDRLF 896
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
++F Q D STTR +GGTGLGL+I + LV+ M G + V K
Sbjct: 897 KAFSQVDASTTRNYGGTGLGLAICQKLVHLMKGNMWVESK 936
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 27/144 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED + Q V IL+++G VV +GL+ ++AL RR+S
Sbjct: 1136 LKILIAEDNIINQKVITNILKRLGYRADVVGNGLEVLDAL---------RRQS------- 1179
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIR----KSESEHGARNIPIVALTAHAMNADEK 1065
+DLILMD QMP+MDG AT +IR S S+ + I+A+TA+AM D +
Sbjct: 1180 -------YDLILMDVQMPEMDGLTATRQIRTLWNSSNSDFQGQRPCIIAMTANAMEGDRQ 1232
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTI 1089
+CL GM+ YL+KP+ E ++ +
Sbjct: 1233 RCLEAGMDDYLSKPVKVEALIEKL 1256
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSR--RRSLLQGSPSET----PDTPRFDLILMDCQM 1026
G V +V D E RML + + L+ S ET + P DL ++D QM
Sbjct: 985 GKKVLIVDDN----EVNRRMLRTQCDKFGLEVLITASGEETLALIAEQPDIDLAILDMQM 1040
Query: 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMV 1086
PKMDG AT+ S E R+ P++ L++ EK V A L KPI R+
Sbjct: 1041 PKMDG--ATVAKNISAMEK-YRSTPLILLSSIGHGEIEKALKEVNWAATLIKPIKQSRLF 1097
Query: 1087 STILRLTKN-MPSE 1099
+ ++ +N +PS+
Sbjct: 1098 YILSKVLQNPLPSK 1111
>gi|402488931|ref|ZP_10835736.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
gi|401812115|gb|EJT04472.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
Length = 1125
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 156/290 (53%), Gaps = 38/290 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+ R E + HL +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L + L Q
Sbjct: 566 ELMSREEELRHLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTN-LDTRQ 622
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I KS ALL ++N ILD SK+++G+M+L FD+ + +E++ + S + N
Sbjct: 623 KTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKN 682
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E ++ + ++P V GD GR QI +NL+ N++KFT GH+ + D T
Sbjct: 683 IELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFV-------DVGFQTV-- 733
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++ ++DTG GI + K E+VF+ F Q D
Sbjct: 734 --------------------------AGGEIMASIRIEDTGIGIPREKLESVFDKFSQVD 767
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
S+TR+H GTGLGL+I LV+ GG + V + S G++ + L ++
Sbjct: 768 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWSKGSVFTVNLPFAVAA 817
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 24/147 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q+R E + +L+AED + QIV +IL+ G + VV +G AV A R
Sbjct: 987 QQRATEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVDNGELAVAAWERH---------- 1036
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
TPR +I+MD MP M+G+EAT IR E G R +PI+ +TAHA+ +
Sbjct: 1037 -----------TPR--IIMMDVSMPVMNGHEATRTIRAREKGQGHR-VPIIGVTAHALES 1082
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTI 1089
D CL GM+ Y++KPI E + I
Sbjct: 1083 DRDLCLDAGMDDYMSKPISPELLEEKI 1109
>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 812
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 143/254 (56%), Gaps = 36/254 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS+FLANMSHE+RTPM +IG+ +L D +L EQ ++ S+ L+ ++N ILD
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLL-LDTKLDPEQRQFAESVRNSAENLMTVINDILDF 341
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+GK+ E +FDL + +E +DM + + +E + ++ +PR +RGDPGR+ Q
Sbjct: 342 SKIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQ 401
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I +NL+ N+IKFT G +++ E ++ A +A+
Sbjct: 402 ILTNLLGNAIKFTEHGEVVLSTTLE--------------------------RETATHAI- 434
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+ F+V DTG GI + +F+SFEQ D STTR++GGTGLGL+I + LV M
Sbjct: 435 --------VRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGLGLAISKQLVAMM 486
Query: 663 GGEIKVVKKNSPGT 676
GEI V + G+
Sbjct: 487 HGEIGVQSEAGVGS 500
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 28/147 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR L+AED + Q VA L+K+ +V VV +GL+ +EAL+R +P
Sbjct: 679 LRALVAEDNQVNQTVAAAQLKKLRCSVDVVANGLEVLEALSR---------------AP- 722
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-----HGARNIPIVALTAHAMNADE 1064
+D+I MDCQMP+MDGYEAT IR+ E + H I+A+TAHAM+ D
Sbjct: 723 -------YDVIFMDCQMPEMDGYEATRAIRQREQDRIHPCHWKAPAYIIAMTAHAMHGDR 775
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILR 1091
+KCL VGM+ Y++KP+ + + + I R
Sbjct: 776 EKCLAVGMDDYVSKPMRTAELQAAIER 802
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
+D+ L+D QMP+MDG I K + ++ I+ H + DE + G+ +AYL
Sbjct: 577 YDIALLDMQMPEMDGLTLARAI-KDDPALAPTHLIILTSLGHRLTRDELQAAGI--DAYL 633
Query: 1077 TKPIDSERMVSTIL 1090
KP+ R+ T++
Sbjct: 634 VKPVKQSRLFDTLM 647
>gi|406880450|gb|EKD28803.1| hypothetical protein ACD_79C00201G0011, partial [uncultured
bacterium]
Length = 749
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 150/283 (53%), Gaps = 41/283 (14%)
Query: 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLL 476
E +N KS+FLANMSHE+RTPM IIG++ L D +LT+EQY + +K S+Y+LL ++
Sbjct: 217 ENANRVKSEFLANMSHEIRTPMNGIIGMI-TLALDTKLTDEQYDFLSTVKNSAYSLLGVI 275
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILD SK+E GKM+++ +F+L+ +E +V+ ++Q S +E S + + GD
Sbjct: 276 NDILDFSKMEVGKMQIDEIDFNLRNTIEGVVETVALQASEKKIELACMFSHEVAALLVGD 335
Query: 537 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ 596
R+ QI NL +N+IKFT G ++IR +L +
Sbjct: 336 AARIRQILLNLASNAIKFTPKGEVVIR---------------------------VELLSE 368
Query: 597 ANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
N+ N + F V DTG GI + K +F F Q D STTR +GGTGLGL+I +
Sbjct: 369 TNDMAN--------ILFSVTDTGIGISEDKLGILFNEFSQVDGSTTRIYGGTGLGLAISK 420
Query: 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
LV M GEI V K G+ L L KQ+ FP
Sbjct: 421 KLVLMMNGEIGVESKPGHGSKFWFKLPL-----KKQLNPLPFP 458
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 25/148 (16%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ ++ILLAED + Q VA IL+K G V VV +G AVEA + +
Sbjct: 616 QNIQILLAEDNSINQKVAKNILQKSGFQQVDVVENGRLAVEASEKKV------------- 662
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+D+ILMD QMP++DG AT EIR E + G R+ I+A+TAHA+ D ++
Sbjct: 663 ----------YDIILMDIQMPELDGISATNEIRLREKDQG-RHTTIIAMTAHALKGDSER 711
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTK 1094
CL GM+ YL+KPI+ + M+ I + K
Sbjct: 712 CLQAGMDDYLSKPIEPQEMLKKIAKWVK 739
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G+R+L+ +D + + K+LE G V G+ A+ L ++++++
Sbjct: 465 LKGMRLLITDDNKTNRYILEKMLEHYGVRSVSVDSGVAAISEL----------KKAIIEN 514
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P F L+L+D QMP MDG T+ ++ + ++ I+ LT+ D
Sbjct: 515 DP--------FKLMLLDMQMPGMDGKHTTVIVKNTPE---IKDTVIIILTSLGNRGDLAD 563
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+G YL KP+ ++ TI
Sbjct: 564 ISKIGCAGYLIKPVKESLLMDTI 586
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 176/327 (53%), Gaps = 16/327 (4%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+ I++S+ I VI + I+ V + K+ +L D +++AEA++ KSQFLA +SH
Sbjct: 384 LAITSSLGIYVIFLLIGYIIYATVHRIAKVEDDLQIMKDLKKRAEAADVAKSQFLATVSH 443
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+L++L D L Q V + S AL+ L+N +LD +K+ESGK+EL
Sbjct: 444 EIRTPMNGVLGMLQMLMDTD-LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLEL 502
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
+ D++ ++++ +F + +E + +SD +P+ + GDP R+ QI +NL+ NSI
Sbjct: 503 DAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPNRMRQIITNLMGNSI 562
Query: 553 KFTSSGHI-----IIRGWCENLDTS---KNTAEFPT-----DRKKFGRAFRTKLKQQANN 599
KFT GHI ++ +LD +NT + R+ ++FR ++
Sbjct: 563 KFTERGHIYLTVHVVEEVMCSLDVETEIQNTYNTLSGCEVAKRRLSWQSFRLFNMDLHSS 622
Query: 600 AMNFRE--DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657
+ F + L V+DTG GI +F F Q PS R HGGTG+GLSI +
Sbjct: 623 ELPFAPIMPETIRLIISVEDTGVGIPLEAQSRIFTPFMQVGPSIARTHGGTGIGLSISKC 682
Query: 658 LVNKMGGEIKVVKKNSPGTLMQLYLLL 684
LV+ M GEI V K+ G+ +L
Sbjct: 683 LVHLMKGEIGFVSKHHVGSTFSFTAVL 709
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 38/166 (22%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L +I++ +D + VA L+K GA V G +A+ L
Sbjct: 871 LLHKRKIIVVDDNAVNLKVAAGALKKYGAEVICADSGKKAIALLK--------------- 915
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----------------N 1049
P + FD MD QMP+MDG+EAT IR E E R
Sbjct: 916 --PPHS-----FDACFMDIQMPEMDGFEATKRIRMMERELNERVERGEAPPECANVRRWR 968
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
PI+A+TA + A + CL M+ Y++KP + E++ + R +N
Sbjct: 969 TPILAMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRFFQN 1014
>gi|359459262|ref|ZP_09247825.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 933
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 177/317 (55%), Gaps = 33/317 (10%)
Query: 403 RAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL+ + ++R KAEA+N KS FLANMSHELRTP+ AI+G ++L D+ LT EQ T
Sbjct: 414 QAELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQT 473
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I +S LL L+N +LD+SK+E+GK+ L DL L+ L +MF++Q + +
Sbjct: 474 LNTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALQAKSKGLVL 533
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ S +P ++R D R+ Q+ NL+ N++KFT G + +R + + L F +
Sbjct: 534 NIQKSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGSVTLRVFTQPL-----PGPFSLN 588
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
++ + L+LCFEV+DTG GI ++ + +FE+F Q S
Sbjct: 589 QETLQPS--------------------LSLCFEVEDTGIGIANNELDNIFEAFIQTS-SG 627
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL--MQLYLLLGASSESKQIYDADFP 699
R H G GLGL+I ++ M G+I++ + GT +Q+ +L+ E+K + D+ +
Sbjct: 628 RRSHEGAGLGLAICHHFIHLMEGDIQIQSQLGQGTTVSVQIPVLI---PEAKAVEDSAYA 684
Query: 700 NTVVVLATVGSMERMII 716
N V+ LA RM+I
Sbjct: 685 N-VIGLAPGQVPIRMLI 700
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 40/147 (27%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+ ED P + + +++ ++G V V +G AVE
Sbjct: 696 IRMLIVEDNPENRQILKRLMTELGFEVQTVDNGQAAVECWQ------------------- 736
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-----------------HGARNIPI 1052
T R +I MD Q+P ++GYEAT IR E++ I
Sbjct: 737 ----TWRPHMIWMDWQLPILNGYEATKAIRSLEAQDQDTGDLASQNAIEITDRSPERTII 792
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKP 1079
+A++A + +C VG + +L KP
Sbjct: 793 IAVSASVFEDTQAECEDVGCDDFLCKP 819
>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Photobacterium
angustum S14]
gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio
angustum S14]
Length = 931
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ +L Q + I+ S+
Sbjct: 279 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--KLNTSQKDYLLTIENSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD L+E++ + + +E L + D IP
Sbjct: 337 NLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NLI N++KFT G N+D S E +D
Sbjct: 397 AGLIGDPLRIQQVVTNLIGNAVKFTEHG---------NIDVS---VELKSDV-------- 436
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
DN +AL F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 437 ---------------DNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGE+ + + G+
Sbjct: 482 GLVITQKLVSQMGGEVSLTSRLHQGS 507
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP+MDG A +I + H N P++A+TAHAM + ++ + GM+ YL
Sbjct: 712 FDLIFMDIQMPEMDGVTACQKIHDTALNH---NTPVIAVTAHAMAGERERLINAGMDDYL 768
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ IL
Sbjct: 769 TKPIE-EHILQQIL 781
>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 1224
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 161/291 (55%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L++ V+ EMK+R + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 643 LVIVTDVT-EMKMREGELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLA 699
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E++V +
Sbjct: 700 KSN-LDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSL 758
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S N+E V+ + ++ V GD GR QI +NL+ N++KFT +GH+++
Sbjct: 759 LSSAALEKNIELVVRIDPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV------- 811
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+ S +AE A+ A+ L V+D+G GI K ET
Sbjct: 812 ELSAQSAE-------------------ASEAI---------LSLRVEDSGIGIPSDKLET 843
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I LV G+I VV + G+ ++
Sbjct: 844 IFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGSSFEV 894
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 34/188 (18%)
Query: 926 GSSRRDQPCSSSNSSSNQKRILEGLR-----ILLAEDTPLIQIVACKILEKVGATVSVVP 980
GSSR + P S + + LR +L+AED + QIV +IL++ G +V
Sbjct: 1059 GSSRPEGPASEKKRRAEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVG 1118
Query: 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
+G +AV+A A +ILMD MP M+G++AT IR
Sbjct: 1119 NGKKAVQAWEEYNPA-----------------------IILMDVSMPVMNGHQATQAIRT 1155
Query: 1041 SE-SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR-LTKNMP- 1097
+E + R++PI+ +TAH +AD CL GM+ YL+KPI E + I + L +++P
Sbjct: 1156 AELAAAEGRHVPIIGVTAHTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWLGEDIPR 1215
Query: 1098 ---SEATG 1102
+ATG
Sbjct: 1216 RVSDDATG 1223
>gi|328856936|gb|EGG06055.1| hypothetical protein MELLADRAFT_43665 [Melampsora larici-populina
98AG31]
Length = 1113
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 149/267 (55%), Gaps = 34/267 (12%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR L + AR AE +N KS+FLANMSHE+RTPM IIG+ +I + +LT +Q
Sbjct: 557 LRDALQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQITLAT-ELTRQQREN 615
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + LL +++ +LDLSK+E+G+M +E F L+ + ++ +V+ N++
Sbjct: 616 LTIVHAMANNLLLIIDDVLDLSKIEAGRMTIEKVPFALRTAVFGVLKSLAVKALTSNLQL 675
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
V D++ ++P V GDP R+ Q+ +NLI N+IKFTS GH+ + CE T EF
Sbjct: 676 VFDIAPDVPDFVVGDPFRMRQVITNLIGNAIKFTSGGHVGLS--CEVAYQDPITDEF--- 730
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+L C V DTG GI K + +F++F Q D ST
Sbjct: 731 --------------------------RLEFC--VFDTGIGIKPDKLDLIFDTFCQADGST 762
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKV 668
TRK+GGTGLGL+I + LVN MGG + V
Sbjct: 763 TRKYGGTGLGLTISKRLVNLMGGTLWV 789
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 23/130 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILLAED + Q VA K+L+ G V VV +G +AVEA
Sbjct: 955 KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGARAVEA---------------------A 993
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
T +T +DL+LMD MP M G EAT IR+ E EH +PI+ALTAHAM D ++C+
Sbjct: 994 TKNT--YDLVLMDVSMPTMGGLEATSLIRRHEEEHHLERVPIIALTAHAMIGDRERCIDA 1051
Query: 1071 GMNAYLTKPI 1080
GM+ Y+TKP+
Sbjct: 1052 GMDEYVTKPL 1061
>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
bacteriovorus HD100]
gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
bacteriovorus HD100]
Length = 878
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 39/303 (12%)
Query: 367 AYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHL-DARRKAEASNNYKSQ 425
A+ T + L+++ V + +I C +L + N + ++ E HL D + + ++ KS+
Sbjct: 440 AFNTAVFLLTSLVFVFLI-CTLLLTIANRIITVEEIVDEKTQHLIDLNVQLKKASETKSE 498
Query: 426 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKV 485
FLANMSHE+RTP+ I+G+ ++L+ + L +Q V KK+ + LL ++N ILD+SK+
Sbjct: 499 FLANMSHEIRTPLNVIVGMSDLLE-ESPLNEDQKHYVDISKKAGHNLLSIINDILDISKI 557
Query: 486 ESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFS 545
E+G + LE TE DL + ++ +MF ++ N+E + LS++ GDP R+ Q+ S
Sbjct: 558 EAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHSIFMGDPTRIRQVLS 617
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRE 605
NLI+NS+KFT+ G I ++ KN E E
Sbjct: 618 NLISNSLKFTTDGSI-------RVEVMKNQTEM--------------------------E 644
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
N L F V DTG GI + K +F+ F Q D + TRK GGTGLGLSI + LV M G+
Sbjct: 645 GN---LIFHVSDTGIGIPRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGD 701
Query: 666 IKV 668
I V
Sbjct: 702 ITV 704
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 970 EKVGATVSVVPDGLQA-VEALNRMLAAESSRRRSLLQGSPSETP---------------- 1012
E +S VP G A E L+ ++ ++ R L++ TP
Sbjct: 731 EHTAEEISQVPTGPAAEQEPLSILIVDDTEDNRLLIKAYLKNTPHQISEACNGRQALELA 790
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
RFDLILMD QMP MDG+ AT +IRK E +H I ALTA A+ + + L VG
Sbjct: 791 QKQRFDLILMDMQMPVMDGFTATQKIRKWEQDHQRPASTIWALTAFALKNEIDRSLSVGC 850
Query: 1073 NAYLTKPIDSERMVSTILRLTK 1094
N +L KP+ +++ I +L++
Sbjct: 851 NLHLIKPLRKADLLNHIQKLSE 872
>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
Length = 2241
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 176/326 (53%), Gaps = 42/326 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A +N KS FLANMSHE+RTPM +IGL ++L + L N+Q + + +S+ +
Sbjct: 1484 ARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTN-LDNKQKNYAKKTLESANS 1542
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E GKM LE F+L++ ++ + + ++ ++E ++D+S NIP
Sbjct: 1543 LLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRAHTKDLELIVDISPNIPF 1602
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GD R+ QI NL +N++KFT SGH+IIR S N E
Sbjct: 1603 NLIGDALRLEQILLNLTSNAVKFTKSGHVIIRV------QSLNEVEI------------- 1643
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+D + L EV+DTG GI + + +FESF Q + S TR+ GGTGLG
Sbjct: 1644 -------------DDMHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLG 1690
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE-----SKQIYDADFPNTVVVLA 706
L+I + LV M G+I+V + + G+ L + L + E +K IY N +++
Sbjct: 1691 LAICKQLVELMQGQIQVRSQPNIGSTFSLKINLERAEELAQPSAKNIYH----NLNILVV 1746
Query: 707 TVGSMERMIISQWLRKKKVSTLETSE 732
+ + +IS+ L +S + ++
Sbjct: 1747 DDNPISQQVISRMLGHLNISCTQAND 1772
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 29/153 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL ED + + VA ++L + G V + +G AV ++
Sbjct: 1891 QILLVEDNEINRHVALELLSETGIKVDIALNGQDAVNLVS-------------------- 1930
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ LILMD QMP MDG AT IR+ +S+ +PI+A+TAHAM ++++K L
Sbjct: 1931 ---VNDYHLILMDIQMPIMDGLTATKRIRQLKSK---EELPIIAMTAHAMPSEKEKSLIA 1984
Query: 1071 GMNAYLTKPIDSERMVSTI---LRLTKNMPSEA 1100
GMN +LTKPI+ + + + L T N+ ++A
Sbjct: 1985 GMNDHLTKPIEPNYLFNALNQWLPKTGNLTAKA 2017
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
K I L IL+ +D P+ Q V ++L + + + DG +AVE +
Sbjct: 1735 KNIYHNLNILVVDDNPISQQVISRMLGHLNISCTQANDGSKAVECV-------------- 1780
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
Q + S+ FD+++MD +MP MDG EA+ I K E E + P L A + D
Sbjct: 1781 -QDAASKNT---HFDMVIMDWKMPNMDGIEAS-RIIKQELE---LDTPPHILMLSAYDRD 1832
Query: 1064 EKKCLG--VGMNAYLTKPIDSERMVSTI 1089
E K LG + ++ YL KP+ +V TI
Sbjct: 1833 EVKLLGSPITIDHYLEKPVSQSTLVETI 1860
>gi|424918579|ref|ZP_18341943.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392854755|gb|EJB07276.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 1127
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 38/290 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+K R E + HL +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L + L Q
Sbjct: 569 ELKSREEELRHLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTN-LDTRQ 625
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I KS ALL ++N ILD SK+++G+M+L FD+ + +E++ + S + N
Sbjct: 626 KTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKN 685
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E ++ + ++P V GD GR QI +NL+ N++KFT GH+ +
Sbjct: 686 IELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFV---------------- 729
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ ++ ++DTG GI K E+VF+ F Q D
Sbjct: 730 -------------------DVGFEMAGGGEIMASIRIEDTGIGIPAEKLESVFDKFSQVD 770
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
S+TR+H GTGLGL+I LV+ GG + V + G++ + L ++
Sbjct: 771 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTVNLPFAVAA 820
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 24/147 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q+R E + +L+AED + QIV +IL+ G + VV +G +AV A R
Sbjct: 989 QQRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERH---------- 1038
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
PR +I+MD MP M+G++AT IR+ E G R +PI+ +TAHA+ +
Sbjct: 1039 -----------RPR--IIMMDVSMPVMNGHQATQTIREREKGQGHR-VPIIGVTAHALES 1084
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTI 1089
D + CL GM+ Y++KPI E + I
Sbjct: 1085 DRELCLDAGMDDYMSKPISPELLEEKI 1111
>gi|254417240|ref|ZP_05030985.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176046|gb|EDX71065.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1359
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 150/265 (56%), Gaps = 35/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE +N KS FLA MSHE+RTPM A+IG+ +L D QLT +Q V I+ SS A
Sbjct: 716 AKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLL-DTQLTAQQGEFVDIIRNSSDA 774
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ LE FDL+ +EE +++ S + + +E + IP
Sbjct: 775 LLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLSSKARDKGIELAYLMDSQIPE 834
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GD R+ QI NL++N++KFT +G ++I + TAE
Sbjct: 835 SIVGDVTRLRQILVNLVSNAVKFTETGDVVI--------SVTPTAEI------------- 873
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ ++ L F V DTG GI +++ + +F+ F Q D STTR++GGTGLG
Sbjct: 874 -------------SEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLG 920
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + L MGG++ V + G+
Sbjct: 921 LAISQRLSELMGGKMWVESEEGVGS 945
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 25/131 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q VA +L+++G V +GL+ ++AL+R
Sbjct: 1121 LKILLAEDNVVNQKVAVNMLKRLGYRPDSVANGLEVLQALHRQ----------------- 1163
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD QMP+MDG AT +I + S G+ I+A+TA+AM D ++CL
Sbjct: 1164 ------SYDVVLMDIQMPEMDGLTATQQICQEFS--GSARPRIIAMTANAMQGDREECLA 1215
Query: 1070 VGMNAYLTKPI 1080
GM+ Y++KPI
Sbjct: 1216 AGMDDYMSKPI 1226
>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
sp. SKA34]
gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
sp. SKA34]
Length = 929
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 148/266 (55%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+ +L Q + I+ S+
Sbjct: 279 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--KLNTSQKDYLLTIENSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD L+E++ + + +E L + D IP
Sbjct: 337 NLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ +NLI N++KFT G N+D S E +D
Sbjct: 397 AGLIGDPLRIQQVVTNLIGNAVKFTEHG---------NIDVS---VELKSDV-------- 436
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
DN +AL F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 437 ---------------DNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGE+ + + G+
Sbjct: 482 GLVITQKLVSQMGGEVSLTSRLHQGS 507
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP+MDG A +I + H N P++A+TAHAM + ++ + GM+ YL
Sbjct: 712 FDLIFMDIQMPEMDGVTACQKIHDTALNH---NTPVIAVTAHAMAGERERLINAGMDDYL 768
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ IL
Sbjct: 769 TKPIE-EHILQQIL 781
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 153/271 (56%), Gaps = 42/271 (15%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKS---DDQLTNEQYSTVCQIKKSSYALLRLLNRIL 480
SQFLA MSHE+RTP+ +IG+L++LK+ DD+ ++Y T+C + S+ LL L+N IL
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDR--QKRYVTIC--RSSADTLLGLINDIL 666
Query: 481 DLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRV 540
DLSK+E+G+MEL +FDL + +E++ +MF + VE ++ ++P+ + GDP R+
Sbjct: 667 DLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERL 726
Query: 541 FQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNA 600
QI NL+ N++KFTS G+++I+ + A+ PT +
Sbjct: 727 RQILVNLVGNALKFTSVGYVLIK---------VSMAQSPTGEHR---------------- 761
Query: 601 MNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660
L V DTG GI ++ + +F+ F Q D +T+R+ GGTGLGLSI R L +
Sbjct: 762 ----------LQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFGGTGLGLSICRQLAD 811
Query: 661 KMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
M G I++ GT + L L ++ SK
Sbjct: 812 LMQGSIQIESAVGVGTTFTVDLPLTSAEVSK 842
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 33/168 (19%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP S + + S RIL+A+D + IV +++ +G DG +E L
Sbjct: 989 QPLSETKTPSA--------RILIADDNEVNLIVTTELVRSLGFDTETAADGSIVLEKLK- 1039
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-HGARNI 1050
S+T +DLILMDCQMP +DG+E T +IR+ E + +I
Sbjct: 1040 -----------------SQT-----YDLILMDCQMPTLDGFETTRKIREIEKQAQNGEHI 1077
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR-LTKNMP 1097
PIVALTA+A+ D +C GM+ YLTKPID ++ +T+L+ LT + P
Sbjct: 1078 PIVALTANAIQGDNDRCRQAGMDGYLTKPIDHAQLSNTLLQILTTHQP 1125
>gi|408377685|ref|ZP_11175286.1| two component sensor kinase/response regulator hybrid [Agrobacterium
albertimagni AOL15]
gi|407748676|gb|EKF60191.1| two component sensor kinase/response regulator hybrid [Agrobacterium
albertimagni AOL15]
Length = 1338
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 176/337 (52%), Gaps = 46/337 (13%)
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
C+++LT+ E+K R + L AR +EA++ KS FLANMSHE+RTPM ++G+ E+
Sbjct: 765 CVVVLTD--FTELKEREAELEVLLAR--SEAADKAKSDFLANMSHEIRTPMNGVLGMAEL 820
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S +L + Q + V + KS ALL ++N ILD SK+++G+++L + FD + +E++
Sbjct: 821 L-SKSELDSRQKTFVDIMVKSGNALLTIINDILDFSKIDAGQLKLRKSPFDPVEAIEDVA 879
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
+ S + ++E V+ + GDPGR QI +NL+ N+IKFT GH+ +
Sbjct: 880 TLLSAAAAEKDIELVVSGDQKVRHTFMGDPGRFRQIVTNLLGNAIKFTEKGHVHV----- 934
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
E TD G+A L ++DTG GI Q
Sbjct: 935 ---------EVSTDAMAEGQAI---------------------LKLRIEDTGIGIPQDMQ 964
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+FE F Q D S+TR+H GTGLGL+I LV GG+++V + G+ + L L
Sbjct: 965 AKIFEKFSQVDTSSTRRHEGTGLGLAITGGLVRLFGGKLQVESEVGRGSAFTVELPLAIV 1024
Query: 688 SESKQIYDADFPNTV----VVLATVGSMERMIISQWL 720
+E + + P TV V++ ++ R II++ L
Sbjct: 1025 AERRG--QKELPATVKDARVLVIDDNAVNRRIITEQL 1059
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 23/141 (16%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
LR+L+AED P+ QIV +IL G +V +G +AV+A
Sbjct: 1206 ALRVLIAEDNPVNQIVFRQILTGSGVAYRIVGNGEEAVQAWR------------------ 1247
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
SE PD LILMD MP M+G++AT IR E+ + PI+ +TAHA+++D + CL
Sbjct: 1248 SEPPD-----LILMDVSMPVMNGHQATGVIRAEEAALSSGRTPIIGVTAHALDSDREACL 1302
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KPI E ++ I
Sbjct: 1303 AAGMDDYLSKPISPELLMRKI 1323
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ +D + + + + LE G VPDGL ++ +LAA + ++
Sbjct: 1041 RVLVIDDNAVNRRIITEQLEMWGFDGLAVPDGLTGLD----ILAAAHTEGLAI------- 1089
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D++++D QMP M+G + IR S+ +I +V LT+ M D++ +
Sbjct: 1090 -------DVVVIDYQMPDMNGIDVAKAIR---SDRRFDDIALVFLTSMDMVGDDRLFESL 1139
Query: 1071 GMNAYLTKPIDSERMVSTILRLTK 1094
+ A+L KP + + I+ + +
Sbjct: 1140 KIQAHLMKPARANVLRGAIIDVVR 1163
>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
Length = 1060
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 35/365 (9%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 412 FFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 471
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 472 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 528
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N +E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 529 IRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTERG 588
Query: 559 HIIIRGWCENLDTSKNTAEFPT---------------------------DRKKFGRAFRT 591
HI ++ ++ SK+ AE T D + +F+
Sbjct: 589 HIFVK--VHLVEQSKDEAEPKTALNGVSEEMIVVSKPSSYNTLSGYEAADGRNSWDSFK- 645
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L + + F + + L ++DTG GI + V F Q D ST+R +GGTG+G
Sbjct: 646 HLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLAAQGRVLMPFMQADSSTSRNYGGTGIG 705
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
LSI + LV M G+I + + G+ +L + I PN + +T M
Sbjct: 706 LSISKCLVELMRGQIHFISRPHIGSTFWFTAVLEKCDKCSAINHLKKPNVEHLPSTFKGM 765
Query: 712 ERMII 716
+++
Sbjct: 766 RAIVV 770
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L +IL+ +D + + VA L+
Sbjct: 888 RASMIGACLQQVLELRKTRQQHPEGSSPAT--LKSLLTEKKILVVDDNIVNRRVAAGALK 945
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ P FD MD QMP+MD
Sbjct: 946 KFGAEVVCAESGQVAL---------------GLLQ-----IPHN--FDACFMDIQMPQMD 983
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 984 GFEATRQIRMMEIEAKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1043
Query: 1086 VSTILRLTKNMPSEAT 1101
++ + K P A+
Sbjct: 1044 YKSVAKSFKPNPISAS 1059
>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 883
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 179/317 (56%), Gaps = 33/317 (10%)
Query: 403 RAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL+ + ++R KAEA+N KS FLANMSHELRTP+ AI+G ++L D+ LT EQ T
Sbjct: 364 QAELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQT 423
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I +S LL L+N +LD+SK+E+GK+ L DL L+ L +MF+++ + +
Sbjct: 424 LNTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVL 483
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ S +P ++R D R+ Q+ NL+ N++KFT G + +R + + L A F +
Sbjct: 484 NIQKSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGSVTLRVFTQPL-----PAPFSLN 538
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
++ + L+LCF+V+DTG GI ++ + +FE+F Q S
Sbjct: 539 QETLQPS--------------------LSLCFDVEDTGIGIANNELDHIFEAFIQTS-SG 577
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL--MQLYLLLGASSESKQIYDADFP 699
R H GTGLGL+I ++ M G+I++ + GT +Q+ +L+ E K + D+ +
Sbjct: 578 RRSHEGTGLGLAICHHFIHLMEGDIQIQSQLGQGTTVSVQIPVLI---PEVKAVEDSAYA 634
Query: 700 NTVVVLATVGSMERMII 716
N V+ LA + RM+I
Sbjct: 635 N-VIGLAPDQAPIRMLI 650
Score = 46.6 bits (109), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 40/147 (27%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+ ED P + + +++ ++G V V +G AVE
Sbjct: 646 IRMLIVEDNPENRQILKRLMTELGFEVQTVDNGQAAVECWQ------------------- 686
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH------GARN-------IP----I 1052
T R +I MD Q+P ++GYEAT IR E++ ++N +P I
Sbjct: 687 ----TWRPHMIWMDWQLPILNGYEATKAIRSLEAQDQDAGDLASQNAVEITDRLPERTII 742
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKP 1079
+A++A + +C VG + +L KP
Sbjct: 743 IAVSASVFEDTQAECEDVGCDDFLCKP 769
>gi|407784571|ref|ZP_11131720.1| sensor histidine kinase/response regulator [Celeribacter
baekdonensis B30]
gi|407204273|gb|EKE74254.1| sensor histidine kinase/response regulator [Celeribacter
baekdonensis B30]
Length = 727
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 148/279 (53%), Gaps = 35/279 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR KAEA+N KS FLANMSHE+RTPM ++G+ ++L ++ +L EQ V IK S A
Sbjct: 205 ARSKAEAANRAKSAFLANMSHEIRTPMNGMVGMADLL-AETELNEEQILYVETIKSSGEA 263
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD SK+E+ K+ L FDL++ +++++ + + V+ ++D +P
Sbjct: 264 LLGLINDVLDYSKIEASKLSLHPEPFDLERCIQDVLVLLQPNATQKKVDLIIDYDMFLPT 323
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N GDPGR+ Q+ +NL+ N++KFT SGH+I+R P + K R
Sbjct: 324 NFIGDPGRMRQVLTNLVGNAVKFTHSGHVIVR-----------VVGLPEEDGKRQR---- 368
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ V+DTG GI E +F F Q + RK GTGLG
Sbjct: 369 -------------------VHVSVEDTGIGIAPDMIEHIFGEFNQVEDERNRKFEGTGLG 409
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
L+I R LV MGGEI V + G+ ++ + ++S
Sbjct: 410 LAITRQLVQLMGGEIWVDSEEGVGSCFGFHITMDVIAQS 448
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 30/165 (18%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P SS +S R +R+L AED Q+V K+L+ + + +G +AVE
Sbjct: 569 PEESSPPTSEAGR---RMRVLAAEDNKTNQLVFGKMLKSLDIELRFANNGREAVEQ---- 621
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
QG DLI MD MP++DG EAT +IR E + GA ++PI
Sbjct: 622 -----------YQGFQP--------DLIFMDISMPEVDGKEATRQIRAFEIDTGA-HVPI 661
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
VALTAHAM DE+ L G++ Y+TKP+ R S I R+ +P
Sbjct: 662 VALTAHAMAGDEQDILAAGLDYYMTKPL---RKASIIDRILTELP 703
>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
Length = 914
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 144/256 (56%), Gaps = 38/256 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A++ A+ + KS+FLANMSHELRTP+ +IG ++LK+ QL++ Q + I+KS+
Sbjct: 276 AKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKT--QLSSSQQDYLQTIEKSAN 333
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD + L+E++ + + +E L + IP
Sbjct: 334 NLLTIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIP 393
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDP R+ Q+ +NLI N+ KFT GHI +
Sbjct: 394 AGVIGDPLRIQQVLTNLIGNATKFTERGHINVS--------------------------- 426
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+LKQQ D +L L F + DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 427 VELKQQ--------RDERLELQFVIRDTGIGISERQQSQLFQAFRQADTSISRRYGGTGL 478
Query: 651 GLSIVRTLVNKMGGEI 666
GL I + LV +MGG+I
Sbjct: 479 GLVITQKLVQQMGGDI 494
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E T +FDLILMD QMP+MDG A EIR++ H P+VA+TAHAM+ + ++ L
Sbjct: 699 EQAQTQKFDLILMDIQMPEMDGVTACHEIRQTPMNHLT---PVVAVTAHAMSGERERLLN 755
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YLTKPI+ E ++ +L
Sbjct: 756 EGMDDYLTKPIE-EHILEQVL 775
>gi|148652199|ref|YP_001279292.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. PRwf-1]
gi|148571283|gb|ABQ93342.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. PRwf-1]
Length = 1157
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 153/272 (56%), Gaps = 8/272 (2%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR +A +S+ KS FLAN+SHELRTP+ +I G + +L LT EQ V I+KSS
Sbjct: 358 EARDQAISSSQAKSAFLANISHELRTPLNSIDGFINLLARHGDLTAEQDLYVQTIRKSSA 417
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL L+N +LD SK+E+GK+ L+ EF L + +++DM S + + + +++P
Sbjct: 418 HLLALVNDVLDFSKIEAGKLVLDKHEFSLYSAIYDVMDMLSPLAAEKGLRMAVLYYNDVP 477
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GD RV Q+ +NL+ N+IKFT G +++R + ++ + + E + ++
Sbjct: 478 NTIIGDALRVKQVLTNLVGNAIKFTDVGEVVVRVGIDEIEDA-SVIEASGQAEDEAKSHH 536
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
K+ +N+ + + + DTG G+ + +F+SF QGDPS TR++GGTGL
Sbjct: 537 AKVATDKDNSGSM-------IHIAIQDTGHGLSEKAKSQLFKSFSQGDPSITRQYGGTGL 589
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
GL I + L MGG+I ++ QL L
Sbjct: 590 GLVISKQLTKLMGGKIGFYDNDNNAAQSQLVL 621
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+G+ IL +D +V +L ++G V G AVE + + L ++
Sbjct: 821 QGVTILAVDDHLPNLLVLDALLSELGIKVITANSGYDAVEIIGKQLMYDTYDSEQAAALE 880
Query: 1008 PSETPDTPR-------------FDLILMDCQMPKMDGYEATIEIRKSES----EHG--AR 1048
ET TP+ DL+ MD QMP+M G EA +IR+ E+ EH +
Sbjct: 881 DKETGATPKDAQSSSLPVQPTTIDLVFMDVQMPRMSGDEAAKKIRQLEADAQKEHKNYHK 940
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+PI+ALTAH + + K + G++ Y+ KPI +++ + R
Sbjct: 941 RLPIIALTAHGLADGKDKFIAAGIDDYVGKPISRPQLLQILQR 983
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 24/259 (9%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R +A A+ KS+FLA MSHE+RTPM A+IG+ +L D +LT+ Q V I+ SS AL
Sbjct: 665 RDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLL-DTRLTSTQQDYVETIRSSSDAL 723
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L L+N ILD SK+ESGK+ELE FDL+ +EE +D+ + + + N+E + P
Sbjct: 724 LSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSK 783
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD---TSKNTAEFPTDRKKFGRAF 589
V GD R+ QI NL++N++KFT +G ++I +L+ + +N E
Sbjct: 784 VIGDGARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEENLDE------------ 831
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
N+ + N+ + F V DTG GI ++ +F+SF Q D ST+R++GGTG
Sbjct: 832 --------NSTETTTQPNRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTG 883
Query: 650 LGLSIVRTLVNKMGGEIKV 668
LGL I + L MGG++ V
Sbjct: 884 LGLVISKRLAEMMGGQMWV 902
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 26/143 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA +IL+++G V +GL+ +EAL R
Sbjct: 1127 LRILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALRRQ----------------- 1169
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRK--SESEHGARNIP-IVALTAHAMNADEKK 1066
+D+ILMD QMP+MDG EA +I+K + E P I+A+TA+AM +D
Sbjct: 1170 ------TYDVILMDMQMPEMDGLEAARQIKKLYGDREQDMSERPRIIAVTANAMESDRND 1223
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
C+ GM+ Y++KPI E++VS +
Sbjct: 1224 CIAAGMDDYISKPIRMEQLVSVL 1246
>gi|399545688|ref|YP_006558996.1| Sensor protein gacS [Marinobacter sp. BSs20148]
gi|399161020|gb|AFP31583.1| Sensor protein gacS [Marinobacter sp. BSs20148]
Length = 969
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 212/434 (48%), Gaps = 76/434 (17%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ IIG E+L L +Q + I+KSS
Sbjct: 289 ARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKGS-LARQQKDHLNTIRKSSEI 347
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ + F L+ +EE++ M + + N++ V + +++P
Sbjct: 348 LLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVNLVYNDVPN 407
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GDP R+ QI +NL+NN+IKFT +G +++R E D S
Sbjct: 408 NLMGDPLRLKQIITNLLNNAIKFTHAGEVVLRASLEEEDAS------------------- 448
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
N ++ R V DTG G+ +++ +F++F Q D ST R++GGTGLG
Sbjct: 449 ------NGSVTLR--------ISVADTGMGLSRAQQRPLFDAFSQADASTARQYGGTGLG 494
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + L +MGG+I + G+ L +S++ D+D P +
Sbjct: 495 LAISKRLTEEMGGKIGLESALGKGSTFWFTLTSTRASQN----DSDSPRNGL------RG 544
Query: 712 ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTN 771
ERMI +L ++K + L + +LR + VSS G A E + E T
Sbjct: 545 ERMI---YLEQQKTTGL------AMEHLLRNWGVTVERVSSPG--AMQERIEQAQQEQTG 593
Query: 772 IKALIDPVYVVVIDIALLDLSSDLWREQLNSLDI--------------FHRKAMFAWVVN 817
V +I I L+S+ +R ++S+++ H + A V +
Sbjct: 594 FA-------VALIGINRHLLNSNRYRSLVHSIEVDRDCRTLLLTPTMESHDTPLVANVSS 646
Query: 818 HQTTSPIKTELSRE 831
H T ++ EL E
Sbjct: 647 HLTKPVLRAELYNE 660
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDL+ MD QMP MDG T ++R+ E+ R I+ALTAHAM+ + + G + Y
Sbjct: 738 QFDLVFMDLQMPGMDGVATTQKLRQLETASCQR-AAIIALTAHAMSDERGRLARQGFDGY 796
Query: 1076 LTKPIDSERMVSTI 1089
+TKP+ S +++ +
Sbjct: 797 MTKPVSSRQLLDAV 810
>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
Length = 929
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLA MSHE+RTPM AIIG+ +L D LT EQ V I++SS ALL LLN +
Sbjct: 252 NQAKSLFLATMSHEIRTPMNAIIGMTGLLL-DRTLTEEQRDFVATIRQSSEALLTLLNDV 310
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+G+ E E FDL++ +E ++D+ +V+ S ++ D++ +P+ + GD R
Sbjct: 311 LDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDMAPELPQMLVGDASR 370
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ NL+ N++KFT G ++ L ++ A++
Sbjct: 371 LRQVLLNLVGNALKFTEHGGAVVSVEGTPLAGAEGEADW--------------------- 409
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
AL F V DTG GI + + +F+ F Q D S +R+ GGTGLGL+I + LV
Sbjct: 410 ----------ALTFSVQDTGPGIPEDRRAGLFQPFNQLDASVSRRFGGTGLGLAICKRLV 459
Query: 660 NKMGGEIKVVKKNSPG 675
MGG I V + PG
Sbjct: 460 EAMGGTIWVESEGVPG 475
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 27/169 (15%)
Query: 924 QIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
Q+ ++R+ +P + + L ILL ED Q +A +LE++G V +G
Sbjct: 628 QLTAARQARPSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGR 687
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES 1043
QA++ALN+ R+D++LMD QMP+MDG EAT IR+
Sbjct: 688 QALQALNQK-----------------------RYDVVLMDLQMPEMDGLEATRRIRE--- 721
Query: 1044 EHGARNIP-IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
E + P ++A+TA+AM++D ++C GM+ +L KPI E + + +LR
Sbjct: 722 ELPPKVQPWVIAMTANAMDSDREQCFAAGMDDFLGKPIRVEALTAALLR 770
>gi|336314746|ref|ZP_08569662.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
gi|335881045|gb|EGM78928.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
Length = 1547
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 159/282 (56%), Gaps = 39/282 (13%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+++++ EL L +++ A+A+N+ KS FLANMSHE+RTPM A++G+L+++KS +
Sbjct: 747 GINRDITAERELELQLRESKYLADAANSAKSMFLANMSHEIRTPMNAVLGMLQLIKSTE- 805
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ +Q+ + + ++ +LL L+N ILD SK+E+GK+ELE F+ + L EL + S
Sbjct: 806 LSTQQHDYTSKAQIAARSLLNLINDILDYSKIEAGKLELEQQPFNTEALLRELDVVLSPS 865
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
N+E + D+ +P V GD R+ Q+ NL +N+IKFT+ G ++
Sbjct: 866 LGKKNIELLFDIDSALPTAVEGDSLRLQQVLINLSSNAIKFTTEGEVV------------ 913
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ +D K + F V DTG GI S+ + +FE
Sbjct: 914 -----------------------LQLTLLQLQDKKARIRFSVRDTGIGISPSQQQRIFEG 950
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
F Q + STTR++GGTGLGL I + +V MGGE+++ ++ PG
Sbjct: 951 FTQAEASTTRQYGGTGLGLVISKRIVELMGGELQL--QSEPG 990
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 25/151 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GLR+LL ED ++VA ++LE GA V + G + ++A+ ++G
Sbjct: 1164 LRGLRLLLVEDNEFNRVVASELLEHEGAVVDMAVGGQEGIDAI--------------IKG 1209
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ S +DL+LMD QMP +DG EAT +IR ++ ++PI+A+TA+ +D++
Sbjct: 1210 NTS-------YDLVLMDVQMPVVDGLEATRQIR---ADKRFASLPIIAMTANVYTSDQED 1259
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLT-KNM 1096
C+ GMN +L KP D ++++ TIL T KN+
Sbjct: 1260 CIKAGMNGHLAKPFDLDKVIETILLFTNKNL 1290
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ +D + K +E++GA+V + G +A+ + A +
Sbjct: 1020 RVLIVDDNATALEILQKTVEQLGASVMLARSGEEALACVEHCFATNQT------------ 1067
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA-----HAMNADEK 1065
++LMD +MP M+G E I+ ++ A N+P+V + + M A
Sbjct: 1068 ------LHVVLMDYRMPGMNGLEVAQCIK---AKSDASNLPVVIMVSAFGRDEIMKAQTT 1118
Query: 1066 KCLGVGMNAYLTKPI 1080
+ L AYLTKP+
Sbjct: 1119 EVLPYA--AYLTKPV 1131
>gi|333995699|ref|YP_004528312.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
gi|333736045|gb|AEF81994.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
Length = 848
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 152/280 (54%), Gaps = 37/280 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L+ + AE + KSQFLANMSHE+RTP+ IIG++E+L+ D L +EQ Q+K S+
Sbjct: 141 LEDKEIAEKAMEAKSQFLANMSHEIRTPIQTIIGMVELLQ-DTSLDHEQSEYSSQVKFSA 199
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILD SK+E+GKMELE+ +FDL++ +E+ V+M S++ + D+
Sbjct: 200 EVLLSLINDILDFSKIEAGKMELEHIDFDLEQTIEQAVEMISMEAHRKGLSIATDVPLEA 259
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
+RGDP + QI NL N++KFT G + + TA+
Sbjct: 260 CIIIRGDPNKFRQILINLAKNAVKFTKEGGVTV------------TAQL----------- 296
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
T+L +Q A+ V DTG GI + +F +F Q D S TR+ GGTG
Sbjct: 297 -TELGKQE------------AIRVSVHDTGIGISEEARSRLFTTFMQADASNTRRFGGTG 343
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
LGL+I + LV MGG I++V G++ + + L S +
Sbjct: 344 LGLAISKNLVELMGGIIEMVPGEEGGSVFRFTIPLERSDQ 383
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 33/150 (22%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE-ALNRMLAAESSRRRSLLQGSPSE 1010
+L+AED P+ Q + I++K+G + DG A+E AL +A
Sbjct: 562 VLIAEDHPVNQKLFAMIMDKLGYPSILADDGQDAMEKALANNIA---------------- 605
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
LI MD QMP+M+GYEAT +RK G + PI+A+TA A + + CL +
Sbjct: 606 --------LIFMDIQMPRMNGYEATENLRKK----GFKK-PIIAVTASAFADEREHCLSI 652
Query: 1071 GMNAYLTKPI---DSERMVSTILRLTKNMP 1097
G++ LTKP D E+M+ + L + P
Sbjct: 653 GIDDILTKPFKRPDIEKMLLKWINLRQEEP 682
>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
Length = 1205
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 149/274 (54%), Gaps = 38/274 (13%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N KS FLANMSHE+RTPM AIIG+ + LK+D L+ Q + + ++K S+ +LL L+N
Sbjct: 478 NKAKSDFLANMSHEIRTPMNAIIGMSYLALKTD--LSKAQRNYIQKVKLSADSLLGLIND 535
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+GK+++EN +F L+ L+ + ++ ++ S +E ++ + ++P + GDP
Sbjct: 536 ILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDPL 595
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI NL NN++KFT G I + E KK G
Sbjct: 596 RLGQILINLANNAVKFTEQGEIKVSIALE---------------KKDG------------ 628
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
N + L F V D+G G+ + +F F Q D STTRK+GGTGLGL+I + L
Sbjct: 629 --------NDITLKFSVTDSGIGMTPEQCNKLFNKFTQADSSTTRKYGGTGLGLAISKEL 680
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
MGG+I V + G+ + LG S KQ
Sbjct: 681 CQLMGGDIGVTSEQGKGSTFSFTVQLGVSHALKQ 714
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++LL ED + Q +A ++LE V++ +G A++
Sbjct: 875 LAGAQLLLVEDNEINQELATELLEGQQVHVTIAENGQVAIDLYK---------------- 918
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ FD ILMDCQMP MDGYEAT IR+ + + IPI+A+TA+ M D++K
Sbjct: 919 -------SHDFDGILMDCQMPVMDGYEATEFIRQKLDD---KQIPIIAMTANVMERDKEK 968
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GMN + KPID M ST+ +
Sbjct: 969 AKNAGMNDIIAKPIDVGAMFSTLAK 993
>gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 182/336 (54%), Gaps = 48/336 (14%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I++SV +L+I + I +S+ K+ + +D + AEA++ KSQFLA +SHE+
Sbjct: 591 INSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHEI 650
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D L ++Q +S L+ L+N++LD +K+ESG +ELE+
Sbjct: 651 RTPMNGVLGMLKLLM-DTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FDL+ ++++V FS++ + +E + +SD +P V GD GR QI ++L+ NS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 555 T-SSGHII--------IRGWCENL------------DTSKNTAE----FPT--------D 581
T + GHI+ +R + + DTS N+ P D
Sbjct: 770 THNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLA-LCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
KKFGR + E++K+ + V+DTG GI Q+ +F F Q D S
Sbjct: 830 FKKFGRT-------------DVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSS 876
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
T+R +GGTG+GLSI + LV+ M GEI V + G+
Sbjct: 877 TSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGS 912
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 41/195 (21%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D + + FRE G +R+Q S+ + +L+ IL+ +D + VA L+K
Sbjct: 1068 DALVSCFRE--AFGIEKRNQVIIKKPST--LRNLLKEKHILVVDDNAVNIRVAEGALKKY 1123
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
GA V+ V G AV LN P FD MD QMP+MDGY
Sbjct: 1124 GAIVTCVKCGKDAVALLN-----------------PPHN-----FDACFMDLQMPEMDGY 1161
Query: 1033 EATIEIRKSESEHGAR---------------NIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
EAT ++R E A+ + PI A+TA + ++CL GM+ Y+
Sbjct: 1162 EATRQVRAVECGVNAKITSGEVSIENNKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVA 1221
Query: 1078 KPIDSERMVSTILRL 1092
KP + E++ S + R
Sbjct: 1222 KPFEEEQLYSAVARF 1236
>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1165
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 30/307 (9%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRL 475
AE ++ KS+FLANMSHE+RTP+ IIG+ + D LT+EQ + + +S+ LL +
Sbjct: 569 AEEASRAKSEFLANMSHEIRTPIHGIIGMASLALETD-LTDEQREHLETVSQSADCLLHI 627
Query: 476 LNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRG 535
+N ILDL+K+E+G++ELE EF + + + M V+ + ++ ++ +N+P ++ G
Sbjct: 628 VNAILDLAKIEAGRVELERIEFSVFDTVSSTIKMLQVRANQKQLQLSWEIDENVPEHLVG 687
Query: 536 DPGRVFQIFSNLINNSIKFTSSGHIII-------RGWCENLDTS----KNTAEFPTDRKK 584
D R+ Q NL+ N+IKFT G + + G E ++ K+++ PT ++
Sbjct: 688 DAARLQQCLINLVGNAIKFTHEGSVSLTAKVYTGTGPLERTSSATLKKKSSSREPTAAEE 747
Query: 585 -----------FGRAFRTKLK-QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
F T + + +N+ ++D++++L F V DTG GI + K + VF+
Sbjct: 748 PQTNDSHHVIDISEIFATDGEISRCSNSATVKKDDRVSLLFAVQDTGIGISKEKQKEVFK 807
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL----LGASS 688
+F Q D STTR +GGTGLGLSIV LV MGG I + ++ PG Y + L S
Sbjct: 808 AFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWL--ESEPGKGSTFYFIAQFDLAGHS 865
Query: 689 ESKQIYD 695
ES + D
Sbjct: 866 ESMKSRD 872
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G++ILLAED + Q VAC+ L+K G V VV DG Q ++AL R
Sbjct: 1016 LRGMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDALER--------------- 1060
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
D +D+ILMD QMP +DG +AT +IR+ E +H + PI+ LTAHA+ + K
Sbjct: 1061 ------DRNGYDIILMDVQMPVLDGLQATRKIREIEEKHNYPHKPIIGLTAHAIQGYKDK 1114
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
CL GM+AY KP ++ I
Sbjct: 1115 CLSAGMDAYACKPFQVRELIQVI 1137
>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
Length = 882
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 155/284 (54%), Gaps = 37/284 (13%)
Query: 393 TNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S
Sbjct: 355 VNRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQS 411
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
+L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F
Sbjct: 412 ELSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQS 471
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
+ ++ +E + L +NIP V D R+ QI +NL++N++KFT G+I ++D S
Sbjct: 472 KATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYI-------SVDVS 524
Query: 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632
A E + +L F + D+G GI++ K T+FE
Sbjct: 525 YEEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFE 557
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 558 PFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 601
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 760 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 800
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 801 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 857
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 858 GMDAYLPKPYKSNQL 872
>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
Length = 1175
Score = 169 bits (428), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 164/323 (50%), Gaps = 38/323 (11%)
Query: 408 SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKK 467
S ++AR+KAEA+N KS+FLANMSHE+RTP+ IIG ++L L Q + +
Sbjct: 645 SLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQT-SLAPFQQKYMQTVHN 703
Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD 527
S+ L+ L+N ILD SK+E+GK+EL DL + + VD+ Q +E +L +S
Sbjct: 704 SANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQAHQKGLEMLLQISP 763
Query: 528 NIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGR 587
++ R V+ D R+ QI NL+ N++KFT G + + N +N AEF
Sbjct: 764 DVKRFVQADSIRLRQILINLLGNAVKFTDQGEVALTVTASNTIAQENEAEFK-------- 815
Query: 588 AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
FE+ DTG GID +F +F+Q D STTRK+GG
Sbjct: 816 -------------------------FEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGG 850
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV--VVL 705
+GLGL+I L+N MG ++KV + GT Y L +E + IY + + V++
Sbjct: 851 SGLGLTISNRLLNLMGSKLKV--NSVQGTGSTFYFDLKLKTEEEPIYKSHNIKEIKKVLV 908
Query: 706 ATVGSMERMIISQWLRKKKVSTL 728
+ R I+ Q L + T+
Sbjct: 909 VDDNATNRKILGQMLAVNSIETV 931
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 27/150 (18%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRR 1001
K E +IL+ ED P+ + +A IL+K+ ++ +G +A++ +
Sbjct: 1040 KTTTEAFKILIVEDNPVNRFLANSILKKIAPNAKLISAVNGEEAIKKFKK---------- 1089
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
+ P D++ MD QMP + G EA I IR E E + PI+ALTA A+
Sbjct: 1090 -----------NKP--DIVFMDIQMPILSGIEAAIAIR--ELEEVPAHTPIIALTARALK 1134
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ +KCL +GM+ YLTKPI + + S + +
Sbjct: 1135 NEREKCLAIGMDDYLTKPIVLDDLRSVLFK 1164
>gi|336313917|ref|ZP_08568839.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
gi|335881856|gb|EGM79733.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
Length = 1493
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 173/311 (55%), Gaps = 37/311 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A+++NN KS FLA MSHE+RTPM AI+G+L++++ LT Q + Q + ++ +
Sbjct: 747 ARQQADSANNAKSAFLATMSHEIRTPMNAILGMLQLVQQTS-LTRRQEDYIRQTEIAAKS 805
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +LN ILD SKVE+GK+E+++ F+L +E+L + S + ++E + ++++P+
Sbjct: 806 LLAILNDILDFSKVEAGKLEMDSHSFELAILMEDLGTILSANLGSKDLEVLYQFAEDLPQ 865
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ Q+ NL N+IKFT +G +++ +L+ ++ TAE
Sbjct: 866 LVVGDSLRLKQVLLNLTGNAIKFTDNGEVVV-----SLEVTERTAE------------AA 908
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
K+K F+V DTG G+ + + +F+SF Q + S +R++GGTGLG
Sbjct: 909 KIK------------------FKVQDTGIGMTEQQLALIFQSFSQAESSISRRYGGTGLG 950
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV MGG++ V G+ + L S + D + VL +
Sbjct: 951 LAISKGLVELMGGQLSVQSTLGSGSSFEFELWFNCLSLNAAQADLSLLQDLKVLVVDDNQ 1010
Query: 712 E-RMIISQWLR 721
+ R I+S+ +R
Sbjct: 1011 QSRQILSEVMR 1021
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 93/167 (55%), Gaps = 30/167 (17%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
+++ Q R L GL++LL ED P QIVA ++L GA V + P G A+ L
Sbjct: 1136 DAAPRQSR-LNGLQLLLVEDNPTNQIVASELLGHEGALVDIAPGGTFALAMLE------- 1187
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1057
+ PD ++DL+LMD QMP MDGYE T IR S+ +PIVA+TA
Sbjct: 1188 ------------QQPD--KYDLVLMDIQMPDMDGYETTRRIR---SKATMLTLPIVAMTA 1230
Query: 1058 HAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK-----NMPSE 1099
+AM +D++ CL GMN ++ KP + +V+TIL+ +K N+P E
Sbjct: 1231 NAMQSDKQACLDAGMNDHVAKPFAIDTLVNTILKWSKTPVDPNVPVE 1277
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 934 CSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML 993
C S N++ +L+ L++L+ +D + + +++ G V + G QA+E
Sbjct: 985 CLSLNAAQADLSLLQDLKVLVVDDNQQSRQILSEVMRHYGCEVDLAHSGEQALE------ 1038
Query: 994 AAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053
LLQ S S + L+L+D MP +DG++ +IR+ ++P+V
Sbjct: 1039 ---------LLQHSNS-------YKLVLLDWLMPGLDGWQTAEKIRQIVQ---GPDMPVV 1079
Query: 1054 AL-TAHAMNADEKKCLGVG---------MNAYLTKPIDSERMVSTIL 1090
+ TAH ++CL +N ++ KP+ R++ +L
Sbjct: 1080 IMVTAHG-----RECLAQKQQDEQSQNLLNGFIVKPVTPSRLLDAVL 1121
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 160/298 (53%), Gaps = 36/298 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYA 471
+ +AEA++ KSQFLA +SHE+RTPM ++G+L+ +L +D +T + Y+ Q+ A
Sbjct: 349 KTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQM--CGRA 406
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L+ L+N +LD +K+E+GK+ELE FDL+ +++++ +FS + +E + + D++P+
Sbjct: 407 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPK 466
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKN---------------- 574
V GDP R QI +NL+ N++KFT GH+ +R EN + N
Sbjct: 467 VVLGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVES 526
Query: 575 --TAEFPT-------DRKKFGRAFRTKLKQQAN-------NAMNFREDNKLALCFEVDDT 618
F T DR+ + F+ L + + N + + + L ++DT
Sbjct: 527 TTNGAFNTLSGFEAADRRNSWQYFKLLLSNKESLLDDLEGENSNLSDSDHVTLAISIEDT 586
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G GI + VF F Q D ST+R +GGTG+GLSI + L MGG+I + G+
Sbjct: 587 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGS 644
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 38/171 (22%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S + +L G IL+ +D + VA L+K GA VS V G A+
Sbjct: 816 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI----------- 864
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------------- 1042
SLLQ S F MD QMP+MDG+EAT +IR+ E
Sbjct: 865 ----SLLQPPHS-------FHACFMDVQMPEMDGFEATRQIRQMEMKANEERKNKLSLTE 913
Query: 1043 -SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
S +P++A+TA + A ++C+ GM+ Y++KP D E++ + RL
Sbjct: 914 ASTFVEYRLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLCQVVSRL 964
>gi|417322829|ref|ZP_12109363.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
Length = 878
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 352 NRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 408
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F +
Sbjct: 409 LSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSK 468
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E + L +NIP V D R+ QI +NL++N++KFT G+I ++D S
Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYI-------SVDVSY 521
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
A E + +L F + D+G GI++ K T+FE
Sbjct: 522 EEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFEP 554
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 555 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 597
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 797 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 904
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 144/268 (53%), Gaps = 32/268 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A + KS+FLANMSHE+RTP+ ++G+L++L++ LT EQ V +++
Sbjct: 504 AKEMADAGSRAKSEFLANMSHEVRTPINGVVGMLQLLETT-ALTEEQQEYVAMAGRAAGR 562
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
L RLL ILDLSKVESG + L+ T F+L++ + ++D+F N N+ +DL+ +PR
Sbjct: 563 LSRLLGDILDLSKVESGALVLQQTPFELEELRQAILDVFGPMARNKNLALSVDLAQALPR 622
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ QI NL+ N++K+T SG + + A FP D
Sbjct: 623 RVMGDDVRLRQILLNLVGNAVKYTDSGFV-------------HVAVFPGDPDS------- 662
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
RE + F V DTG GI K ++VF F Q DP+ GG GLG
Sbjct: 663 ----------PPREGAPFEVVFVVADTGRGIPGHKLDSVFSPFVQTDPAAG-PQGGVGLG 711
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQ 679
L+IV+ LV MGG I + GT M+
Sbjct: 712 LAIVKRLVELMGGRIHLCSVEGQGTSMR 739
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
+ +Q G +L+ ED + ++ A ++L K+G TV +G +A++ L
Sbjct: 757 TGSQAETASGHVVLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLA--------- 807
Query: 1000 RRSLLQGSPSETPDT-PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
+TP P DLILMD QMP MDG EAT IR++ PI+ALTA+
Sbjct: 808 ---------GQTPQAQPSVDLILMDIQMPVMDGLEATRRIRENADGRFDPLTPIIALTAY 858
Query: 1059 AMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AM D ++ L G++ +L KP+ M+ + R
Sbjct: 859 AMAGDRERFLQAGLDDHLAKPVKVAEMLDAMKR 891
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 145/266 (54%), Gaps = 35/266 (13%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
+L + I AR +AE +N KS FLA MSHE+RTPM +IG+ +L D L EQ
Sbjct: 902 ELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETD-LNTEQRE 960
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
I +L+ ++N ILD SK+ESGKM++E+ +FDL+ +EE++D+F + + ++
Sbjct: 961 YAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGID 1020
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
+ ++ N+PR + GD R+ Q+ NLINN+IKFT G + ++
Sbjct: 1021 LIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVK----------------- 1063
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
+ LKQ + ++ L F V DTG GI + K +F+ F Q D S
Sbjct: 1064 ---------ISLLKQDDHGGID--------LAFTVTDTGIGIPEEKLSNLFKPFSQVDSS 1106
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEI 666
TTRK+GGTGLGL I LV MG EI
Sbjct: 1107 TTRKYGGTGLGLVISERLVKLMGDEI 1132
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 29/170 (17%)
Query: 922 RHQIGSSRRDQPCS--SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVV 979
R ++G+ R ++ S+N+ +L L IL+AED + Q + +IL K+G T+ +V
Sbjct: 1283 RAELGNQREEKSTEEKSANTLEGGFSLLHPLSILVAEDNLINQKLIQRILNKMGYTIEIV 1342
Query: 980 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR 1039
+G + +E + ML +D+ILMD QMP+MDG E T IR
Sbjct: 1343 ANGYEVLEQM--MLKT---------------------YDVILMDVQMPEMDGLETTQLIR 1379
Query: 1040 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
K + + I+A+TA+AM D++ C+ GM+ Y+ KP+ + +V+ +
Sbjct: 1380 KGKFKQPF----IIAMTANAMLEDKEICISAGMDDYIAKPMKLDELVALL 1425
>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
Length = 882
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 356 NRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 412
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F +
Sbjct: 413 LSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSK 472
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E + L +NIP V D R+ QI +NL++N++KFT G+I ++D S
Sbjct: 473 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYI-------SVDVSY 525
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
A E + +L F + D+G GI++ K T+FE
Sbjct: 526 EEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFEP 558
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 559 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 601
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 760 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 800
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 801 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 857
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 858 GMDAYLPKPYKSNQL 872
>gi|417857753|ref|ZP_12502810.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens F2]
gi|338823757|gb|EGP57724.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens F2]
Length = 1232
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 160/291 (54%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
LI+ V+ EMK+R E + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 652 LIIVTDVT-EMKMREEELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELL- 707
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ +L Q + I KS ALL ++N ILD SK+E+G+M L + FD + +E++V +
Sbjct: 708 AKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMRLRSVPFDPAEAVEDVVSL 767
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S ++E V+ + + V GD GR QI +NL+ N++KFT +GH++I
Sbjct: 768 LSSAALEKDIELVVRIDPSAFGKVMGDAGRFRQIVTNLVGNAVKFTETGHVLI------- 820
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+ S +AE A+ A+ L V+D+G GI K ET
Sbjct: 821 ELSAQSAE-------------------ASEAI---------LSLRVEDSGIGIPADKLET 852
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I L+ G I VV + G+ ++
Sbjct: 853 IFDKFSQVDGSATRRHEGTGLGLAITVGLIGLFDGVINVVSEVGTGSTFEV 903
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 24/133 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+AED + QIV +IL++ G +V +G +AV+A + +P+
Sbjct: 1101 VLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQAWE--------------EHNPA-- 1144
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH-GARNIPIVALTAHAMNADEKKCLGV 1070
+ILMD MP M+G++AT+ IR +E R++PI+ +TAH +AD ++CL
Sbjct: 1145 -------VILMDVSMPVMNGHQATLAIRAAEQAAADGRHVPIIGVTAHTQDADREQCLAA 1197
Query: 1071 GMNAYLTKPIDSE 1083
GM+ YL+KPI E
Sbjct: 1198 GMDDYLSKPISPE 1210
>gi|433660299|ref|YP_007301158.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
gi|432511686|gb|AGB12503.1| CheY-like receiver [Vibrio parahaemolyticus BB22OP]
Length = 878
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
N V +E + + I H A+ A A+N KS FLANMSHE+RTP+ I+G+ EIL S +
Sbjct: 352 NRVVEEKQRQTHEILH--AKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEIL-SQSE 408
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q V I SS+ LL LLN ILDLSK+ESG++EL E D+++ + + V +F +
Sbjct: 409 LSPHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSK 468
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +E + L +NIP V D R+ QI +NL++N++KFT G+I ++D S
Sbjct: 469 ATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYI-------SVDVSY 521
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
A E + +L F + D+G GI++ K T+FE
Sbjct: 522 EEA---------------------------LEQGRGSLTFLIKDSGIGIERDKLATIFEP 554
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q D +R+ GGTGLGL+I R LV+ MGG++ GT
Sbjct: 555 FTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGVGT 597
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A++A+ +
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLITSNGQEALDAITK------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E + G + I+ALTA + D C
Sbjct: 797 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKKVGCKKTTIIALTASVLEEDIHNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
Length = 1547
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 158/298 (53%), Gaps = 39/298 (13%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
S FLA MSHE+RTP+ ++G+L +L QL++EQ + SS LL ++N ILD S
Sbjct: 869 SDFLAMMSHEIRTPLNGVMGMLSLLNRT-QLSDEQRRKLTIASHSSNTLLNIINDILDFS 927
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD-NIPRNVRGDPGRVFQ 542
KV++GK+ELE+ EF+L +LEE + +++ +VE +LD +D N P V GDPGR+ Q
Sbjct: 928 KVDAGKIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTDINTPM-VCGDPGRIRQ 986
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ +NL+ N+IKFT+ G +++R A P
Sbjct: 987 VLANLVGNAIKFTAEGEVLVR-----------CALVP----------------------- 1012
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+ + L V DTG GI+ K + +F F Q D STTR++GGTGLGL+I + L M
Sbjct: 1013 --QKDDLIFQVSVVDTGIGIENDKLDELFNPFTQVDASTTREYGGTGLGLAICKKLCVLM 1070
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWL 720
GG+I + G+ ++LL A + + + N V+L R ++ +WL
Sbjct: 1071 GGDIAAHSELGSGSTFDFHVLLQACEQQVAVPVMNLENKSVLLIEDNKSVRELVYRWL 1128
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED P+ Q VA +L+ VG V+ +G++A++AL +S+++ L
Sbjct: 1263 RVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDAL------QSAQQWDL------- 1309
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ L+LMDCQMP+MDGYE T IR ++ + IPI+A+TA+AM D+++C
Sbjct: 1310 ------YSLVLMDCQMPEMDGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAA 1363
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ Y++KPID + + RL K +P
Sbjct: 1364 GMDDYISKPIDPQVLED---RLRKWLP 1387
>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
Length = 1755
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 159/291 (54%), Gaps = 37/291 (12%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+++++ +R + + L+ AR++AE +N KSQFLANMSHE+RTPM A++G+L++++ Q
Sbjct: 994 GINQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQT-Q 1052
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L Q V + + ++ +LL LLN ILD SK+++GK+EL+ F L+ L EL + S
Sbjct: 1053 LDTRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGN 1112
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ VE + ++ ++P VRGD R+ QI NL N++KFT +G ++I
Sbjct: 1113 QHHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIH---------- 1162
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ L+Q A + + L V DTG GI + +F
Sbjct: 1163 ----------------LSALRQDAAS---------VTLQVSVTDTGIGITPEQLSRIFNG 1197
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
F Q + STTR+ GG+GLGL I + LV MG E++V + G+ L L
Sbjct: 1198 FTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPGRGSCFSFELCL 1248
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 24/159 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G+R+LL ED L + VA ++L GA+V + DGLQ V
Sbjct: 1410 LAGVRLLLVEDNALNRQVAGELLTHEGASVVMAEDGLQGVRI------------------ 1451
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++ PD FD+I+MD QMP MDG +AT EIR +PI+A+TA+A +AD +
Sbjct: 1452 -ATQQPDA--FDIIIMDIQMPVMDGLQATREIRAVPVLAA---LPILAMTANASHADREA 1505
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
CL GMN ++ KPID + +V IL+L + A GT R
Sbjct: 1506 CLQAGMNDHVGKPIDIDEVVELILKLVQGKAVPAAGTER 1544
>gi|384418944|ref|YP_005628304.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461857|gb|AEQ96136.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 1364
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 168/322 (52%), Gaps = 51/322 (15%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + ++ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIAELMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R L+ MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLLGASSESKQIYDADFPN 700
+ Y ++ + D P+
Sbjct: 863 EFYFVITLEKSAPPQEQRDLPS 884
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 29/181 (16%)
Query: 923 HQIGSSRRDQ-PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H++ DQ P + + + + R LEG+ +LL +D+ + VA +ILE GA V+V D
Sbjct: 1004 HRLFEQLMDQRPGTRAATPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHD 1063
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G QAV L R PD F L+LMD QMP +DGYEAT +R+
Sbjct: 1064 GEQAVSTLKR-------------------APDL--FHLVLMDVQMPVVDGYEATRRLRQI 1102
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMP 1097
+ ++P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +P
Sbjct: 1103 PA---LASLPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIP 1159
Query: 1098 S 1098
S
Sbjct: 1160 S 1160
>gi|254412478|ref|ZP_05026252.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180788|gb|EDX75778.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1082
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 160/291 (54%), Gaps = 26/291 (8%)
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
C++ ++ +S ++ L A+ AE +N KSQFL+NMSHELRTP+ AIIG ++
Sbjct: 573 CLIAVSQDISDRKQVEFALQR---AKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQL 629
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L D LT E + + I +S LL L+N +L LSKVE+G+++L FDL L+ L
Sbjct: 630 LGRDSSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVLE 689
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
+MF +Q N ++ V+D + +PR V D G++ Q+ NL+NN+IKFTS G + +R
Sbjct: 690 EMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGGVTLRVKAV 749
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ ++T PT F T Q L FE++DTG GI +
Sbjct: 750 QGEMGEST-RHPT--------FNTLPIPQ-------------KLRFEIEDTGLGIASEEI 787
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
E++FE+F Q + + + GTGLGL I + V MGGEI V + + G++
Sbjct: 788 ESLFEAFVQTE-AGRKSLEGTGLGLPISQQFVRLMGGEIHVSSRLNQGSIF 837
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP MDGYEAT I+ + ++ALTA A + L G + ++ K
Sbjct: 916 LIWMDMRMPVMDGYEATKHIK---GHLKGQATVVLALTASAFEEERSLVLSAGCDDFVRK 972
Query: 1079 PIDSERMVSTI 1089
P + + + I
Sbjct: 973 PFREDVIFNKI 983
>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 1364
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 168/322 (52%), Gaps = 51/322 (15%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + ++ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIAELMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R L+ MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLLGASSESKQIYDADFPN 700
+ Y ++ + D P+
Sbjct: 863 EFYFVITLEKSAPPQEQRDLPS 884
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 29/181 (16%)
Query: 923 HQIGSSRRDQ-PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H++ DQ P + + + + R LEG+ +LL +D+ + VA +ILE GA V+V D
Sbjct: 1004 HRLFEQLMDQRPGTRAATPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHD 1063
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G QAV L R TP+ F L+LMD QMP +DGYEAT +R+
Sbjct: 1064 GEQAVSTLKR-------------------TPNL--FHLVLMDVQMPVVDGYEATRRLRQI 1102
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMP 1097
+ ++P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +P
Sbjct: 1103 PA---LASLPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIP 1159
Query: 1098 S 1098
S
Sbjct: 1160 S 1160
>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
C6786]
Length = 925
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 164/326 (50%), Gaps = 47/326 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ E +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 414 LCTL-LDISLRKESELKLE-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 467
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+++
Sbjct: 468 LLRRS-PLSMRQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDI 526
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + +E + + I GDP R+ QI SNLI N+IKFT SGHI I
Sbjct: 527 VDAYAPLAESKGLELFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISID--- 583
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K G N+A+ V DTG GI +
Sbjct: 584 -------------VHRAKTG---------PGNSAIE----------IWVSDTGIGIQPDR 611
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
T+F+ + Q D S R+ GG+GLGL + + L MGG I++ GT + + L L
Sbjct: 612 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEFGTTVTVVLPL-- 669
Query: 687 SSESKQIYDADFPNTVVVLATVGSME 712
E++Q A PN L SM
Sbjct: 670 -HEARQA--AAMPNVPTALHRNASMH 692
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G A+ A +
Sbjct: 697 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGRDALRAFSEH----------------- 739
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D +L D MP++DG+ + K ++ +PI+A+TAHA D ++
Sbjct: 740 ------QYDAVLTDLGMPELDGFGFAMFANKMRAD-----VPIIAMTAHATAEDYQRSKK 788
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
VG+ + KP+ + + R MP+
Sbjct: 789 VGIAEIVLKPLSLNTLDKVLQRHAARMPA 817
>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 1402
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 168/322 (52%), Gaps = 51/322 (15%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + LT E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 648 VIGYLGVAVDLTEQKLHEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 700
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 701 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 759
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + ++ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 760 LFDNIAELMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 816
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 817 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 842
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R L+ MGGE++V ++ PG
Sbjct: 843 GIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV--ESVPGRGS 900
Query: 679 QLYLLLGASSESKQIYDADFPN 700
+ Y ++ + D P+
Sbjct: 901 EFYFVITLEKSAPPQEQRDLPS 922
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 29/181 (16%)
Query: 923 HQIGSSRRDQ-PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H++ DQ P + + + + R LEG+ +LL +D+ + VA +ILE GA V+V D
Sbjct: 1042 HRLFEQLMDQRPGTRAATPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHD 1101
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G QAV L R TP+ F L+LMD QMP +DGYEAT +R+
Sbjct: 1102 GEQAVSTLKR-------------------TPNL--FHLVLMDVQMPVVDGYEATRRLRQI 1140
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMP 1097
+ ++P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +P
Sbjct: 1141 PA---LASLPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIP 1197
Query: 1098 S 1098
S
Sbjct: 1198 S 1198
>gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
Length = 738
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 171/335 (51%), Gaps = 45/335 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L +T V E +L+A AR+KAEA+N KS FLANMSHE+RTPM I+G+ ++L
Sbjct: 192 LNITASVQHEAQLQA-------ARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLL- 243
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
S+ QL +EQ V I+ S ALL ++N +LD SK+E+ K+ L EFDL++ + E+V +
Sbjct: 244 SETQLNDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINEVVML 303
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+ + ++D +P GDPGRV QI +NL+ N++KFT GH++IR
Sbjct: 304 LQPSARDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLHGHVLIR------ 357
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
P + + N + ++DTG GI K +
Sbjct: 358 -----VTGVPDESR-----------------------NDCDIHIAIEDTGIGIPPDKIDH 389
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG--AS 687
+F F Q D TR+ GTGLGLSI + L++ MGG + V G+ L L
Sbjct: 390 IFGEFNQIDDKKTRQFDGTGLGLSITKRLISLMGGTLWVDSDPGKGSCFGFRLTLPTVVG 449
Query: 688 SESKQIYDADFPNTVVVLATVGSMERMIISQWLRK 722
S+ AD V+V + ++ R I+++ LR+
Sbjct: 450 SQPAPPALADRLKHVIVAEDL-AVNRAILTKQLRR 483
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 28/178 (15%)
Query: 918 MFRERHQIGSSRRDQPCSSSNSSSNQKRILEG----LRILLAEDTPLIQIVACKILEKVG 973
+F Q+GS QP + + + + G +R+L AED Q++ K+ + +
Sbjct: 568 LFERLLQVGSGVLTQPKAPAPDPRPSRPAVGGTLRRMRVLAAEDNRTNQLILSKMTKDLN 627
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
+ +V +G +AV A ++ P DLI MD MP MDG +
Sbjct: 628 IDLKLVANGAEAVSAF--------------VEFDP---------DLIFMDISMPLMDGKQ 664
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT EIRK E G ++PIVALTAHAM D++ L VG++ YLTKP+ + + I R
Sbjct: 665 ATQEIRKREIGTGV-HVPIVALTAHAMAGDKQNFLAVGLDHYLTKPLQKKIICEMIQR 721
>gi|421119436|ref|ZP_15579756.1| GHKL domain protein [Leptospira interrogans str. Brem 329]
gi|410347587|gb|EKO98460.1| GHKL domain protein [Leptospira interrogans str. Brem 329]
Length = 841
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS N+Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKIKSQFLASMSHEIRTPLNGIIGLIEQFKSTPLDENQQ 506
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
Y I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 507 YIRNL-IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|383758140|ref|YP_005437125.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381378809|dbj|BAL95626.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 1383
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 140/257 (54%), Gaps = 39/257 (15%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLANMSHE+RTPM AI+G+ +L + Q + +I + LL+++N I
Sbjct: 731 NRAKSAFLANMSHEIRTPMNAILGMAHLLAREIS-EPRQRERLAKIGDAGEHLLQVINDI 789
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+E+GKM+LE TEF L + L ++ + S +E VLD +D +P + GDP R
Sbjct: 790 LDLSKIEAGKMQLEQTEFALDELLARCFEIVGERASAKGLELVLD-TDRVPARLLGDPTR 848
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q NL+ N+IKFT G W RT+L Q
Sbjct: 849 LSQALINLLANAIKFTEHG------WV---------------------GLRTELMQD--- 878
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ +L + FEV DTG GI + +F +FEQ D S+TR+HGGTGLGL++ R +
Sbjct: 879 -----DGERLLVRFEVRDTGEGITPERQARLFHAFEQADASSTRRHGGTGLGLALTRHIA 933
Query: 660 NKMGGEIKVVKKNSPGT 676
MGG++ V +++PG
Sbjct: 934 ELMGGDVGV--QSTPGA 948
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 27/178 (15%)
Query: 914 LIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973
L+ T+ R + ++ P ++ + + G R+LLAED P+ Q VA ++L VG
Sbjct: 1094 LLDTVLRVVRRRDAAAESAPAPVGDAERRLRALYAGQRVLLAEDNPINQEVAEELLRTVG 1153
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
V DG QAV+ R+L G L+LMD QMP +DG+
Sbjct: 1154 LLVDTAVDGRQAVD-------------RALAGGHA----------LVLMDLQMPGLDGFA 1190
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT EIR +PIVA+TA+A + D + CL GMN ++ KP+ E++ +T+LR
Sbjct: 1191 ATREIRARLGP----ALPIVAMTANAFDEDRELCLQAGMNDHVPKPVSPEQLYATLLR 1244
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G+ LL +D ++V + L+++G TV G A+ R L A
Sbjct: 976 VLAGMTALLVDDLQEARVVLAERLQRMGLTVDAADGGEAALAQARRRLDAGGG------- 1028
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
+D+ L+D M MDG E T R+ + G R P V +TA ADE
Sbjct: 1029 -----------YDIALVDWLMAPMDGLETT---RQLAALLGPRMPPTVLVTA----ADEP 1070
Query: 1066 K----CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
VG A L KP+ ++ T+LR+ + + A
Sbjct: 1071 GIGALAAAVGCVAVLAKPVTPSALLDTVLRVVRRRDAAA 1109
>gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
Length = 790
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 146/254 (57%), Gaps = 34/254 (13%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS+FLANM+HE+RTPM A++G ++L D L +Q + +I SS LL ++N ILD+
Sbjct: 233 KSEFLANMNHEIRTPMNAVLGRTQLLLDTD-LDAQQLDHLGKIHNSSKMLLGIINDILDI 291
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESGK+E+E FDL++ ++++ +FS S ++ D+ ++PR + GD R+ Q
Sbjct: 292 SKIESGKLEIEPHRFDLREVIDQVDTLFSAAASEKGLDVTYDIQPDLPRMLIGDSLRLTQ 351
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ SNL++N+IKFT G T E + + G A
Sbjct: 352 VLSNLLSNAIKFTPRG---------------GTVEL--NLHEVGEA-------------- 380
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+D+ + F+V D+G G+D + + +F+ FEQ D STTR++GGTGLGL I R LV M
Sbjct: 381 --DDDAAHVRFQVRDSGIGMDAEQLKRIFQPFEQADASTTRQYGGTGLGLEIGRRLVTNM 438
Query: 663 GGEIKVVKKNSPGT 676
GG ++V + G+
Sbjct: 439 GGRLEVTSRPGQGS 452
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 53/203 (26%)
Query: 927 SSRRDQPCSSSNSSSNQKRI-------LEGLRILLAEDTPLIQIVACKILEKVGATVSVV 979
S+R P S ++ + + L G RILL ED + Q VA ++LEK GA V
Sbjct: 496 SNRGSLPAEPSEERAHDQTLFRVIAPDLSGARILLVEDNRINQEVALQLLEKTGAQVQAA 555
Query: 980 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR 1039
+G A+EA+ D DLILMD QMP MDG+E T +
Sbjct: 556 ENGHAALEAV-----------------------DAREPDLILMDLQMPVMDGFETTRRLL 592
Query: 1040 KSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE----------RMVSTI 1089
++ + PI+AL+A + D + GM + KPI E R + +
Sbjct: 593 ET-----GYSGPIIALSAAVLEEDRHRAEAAGMRGLIKKPIQQEVLYGALAAELRPSAAV 647
Query: 1090 LRL--------TKNMPSEATGTT 1104
LR T+ P ATG +
Sbjct: 648 LRQPAEPRAASTQTQPGAATGAS 670
>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP6]
gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP6]
Length = 808
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 139/255 (54%), Gaps = 36/255 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
++ AEA+ N KS+FLANMSHE+RTP+ A+IGL IL D L EQ + I+ S A
Sbjct: 410 SKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGILLGTD-LNREQRDHMEIIRSSGDA 468
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK++SGKMELE FD++K +E+ VD+ + + D+ ++IP+
Sbjct: 469 LLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVAQEKGLTLGYDIEESIPK 528
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ DP R+ QI N++ N++KFTSSG + I + R GR
Sbjct: 529 TIVSDPTRLRQILVNILGNAVKFTSSGEVRI---------------LVSGRDLGGREHE- 572
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ F V DTG GI K +F+SF Q +P TTR++GG GLG
Sbjct: 573 -------------------IHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLG 613
Query: 652 LSIVRTLVNKMGGEI 666
L+I + LV M G I
Sbjct: 614 LAISKRLVELMDGSI 628
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 30/143 (20%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED + Q V K+L K+G V +GL+ + AL+R
Sbjct: 673 LRILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQ----------------- 715
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D+ILMD QMP+MDG +A +IR++ +P I+A+TA AM D++KC+
Sbjct: 716 ------DYDVILMDIQMPEMDGLDAARKIRETRP-----TLPKIIAITAFAMEGDKEKCI 764
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ Y++KP++ E + ILR
Sbjct: 765 DSGMDGYISKPVNLEEL-RAILR 786
>gi|45655765|ref|YP_003574.1| histidine kinase sensor protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421086860|ref|ZP_15547708.1| GHKL domain protein [Leptospira santarosai str. HAI1594]
gi|421103983|ref|ZP_15564579.1| GHKL domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45602736|gb|AAS72211.1| histidine kinase sensor protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366464|gb|EKP21856.1| GHKL domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430889|gb|EKP75252.1| GHKL domain protein [Leptospira santarosai str. HAI1594]
Length = 841
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS N+Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKSTPLDENQQ 506
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
Y I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 507 YIRNL-IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 878
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 145/267 (54%), Gaps = 35/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L + A ++N KS FLA+MSHE+RTP+ IIG+ EIL D L++ Q + I SS
Sbjct: 366 LQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSD-LSDHQKEVLSDIDTSS 424
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+ LL LLN ILDLSK+ESG ++L E D+++ + + V +F + ++ +E ++L + I
Sbjct: 425 HTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSVILFQSKATSKRLELNINLDERI 484
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P ++ D R+ QI NL++N++KFT G I N+D N E T + F
Sbjct: 485 PARIKVDDHRIKQIIMNLVSNAVKFTEQGSI-------NIDV--NYQESTTQKSVF---- 531
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V DTG GI+Q K +T+FE F Q D +R+ GGTG
Sbjct: 532 ---------------------LTFRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTG 570
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I R LV MGG++ GT
Sbjct: 571 LGLAICRQLVAMMGGQLTASSSKGIGT 597
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+ +
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAITK------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E E G+ I+ALTA + D + C
Sbjct: 797 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKEVGSGKTTIIALTASVLEEDIQNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|418666279|ref|ZP_13227710.1| GHKL domain protein [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758226|gb|EKR19825.1| GHKL domain protein [Leptospira interrogans serovar Pyrogenes str.
2006006960]
Length = 841
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS N+Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKIKSQFLASMSHEIRTPLNGIIGLIEQFKSTPLDENQQ 506
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
Y I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 507 YIRNL-IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|334117195|ref|ZP_08491287.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462015|gb|EGK90620.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 856
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 163/294 (55%), Gaps = 26/294 (8%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLANMSHELRTP+ +I+G +I++ L+ E + I++S LL L+N +
Sbjct: 319 NKAKSTFLANMSHELRTPLNSILGFAQIMEPSPDLSVENRENMRIIRRSGEHLLTLINEV 378
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+E+G+M L FDL + L++L DMF ++ N +++ ++P+ VR D +
Sbjct: 379 LDLSKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVENQDLQLRFQRDADVPQYVRADDIK 438
Query: 540 VFQIFSNLINNSIKFTSSGHIIIR-------GWCENLDTSKNTAEFPTDR--KKFGRA-- 588
+ Q+ NL++N+IKFT +G II+R G+ + LD+ TA F T R + F R
Sbjct: 439 LRQVLINLLSNAIKFTQTGEIILRVIKLEKSGYLDLLDSP--TACFDTTRSIRDFSRTSS 496
Query: 589 --FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
R + + +A ++ L FE++DTG GI + +F++F Q S +
Sbjct: 497 DFARDRWRDEAEDSTV----PAFFLLFEIEDTGVGIAPEELGNIFKAFVQT-ASGKKNPK 551
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GTGLGL I R V MGGEI V + GT + + +GA +Y A+ P+
Sbjct: 552 GTGLGLKISRQFVRLMGGEIVVESELELGTTFKFEIPVGA------VYAAELPD 599
Score = 46.6 bits (109), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 1019 LILMDCQMPKMDGYEATIEI------RKSESE--------HGARNIP-IVALTAHAMNAD 1063
LILMD +MP MDGYEAT +I R+ E + H IP I+ALTA +
Sbjct: 662 LILMDVRMPVMDGYEATKQIKARIKQREQEQQGNGEMNISHPDSPIPKIIALTASTIEGK 721
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTI 1089
L VG + +++KP + T+
Sbjct: 722 RSFALLVGCDDFISKPFRKTDIFDTL 747
>gi|392579684|gb|EIW72811.1| hypothetical protein TREMEDRAFT_26505 [Tremella mesenterica DSM 1558]
Length = 1406
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 151/268 (56%), Gaps = 37/268 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHEL-RTPMAAIIGLLEILKSDDQLTNEQYS 460
LR + + AR++AE +N KS+FLANMSHE+ RTPM IIG+ +L + +LT +Q
Sbjct: 789 LRESIEKNTKARQEAEGANKSKSEFLANMSHEISRTPMNGIIGM-TVLTLETELTRQQRE 847
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
+ + + +LL +++ ILD+SK+E+G+M +E F L+ + ++ V+ S + ++
Sbjct: 848 NLMIVSSLASSLLTIIDDILDISKIEAGRMTMETIAFSLRLAVFSVLKTLCVKASQNKLD 907
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
+ D+ IP + GDP R+ Q+ +NLI N++KFT+ G +
Sbjct: 908 LIFDIEPGIPDQLIGDPLRLRQVITNLIGNAVKFTTEGAV-------------------- 947
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
A +LK+ + ED +L C + DTG GI Q K + +F++F Q D S
Sbjct: 948 -------ALTCRLKEARD------EDIELEFC--IADTGIGIKQDKLDVIFDTFAQADGS 992
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
TTRK+GGTGLGL+I + LVN M G + V
Sbjct: 993 TTRKYGGTGLGLTISKRLVNLMSGNLWV 1020
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 18/142 (12%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED + Q +A K+LE G + V +G A+E +R L P
Sbjct: 1215 LDILLAEDNLVNQKLAVKLLETAGHQIDVADNGEVAIE----------KYKRKQLARKP- 1263
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ILMD MP M G EAT IR+ E G PI+ALTAHAM D+++CL
Sbjct: 1264 -------YDVILMDVSMPVMGGMEATGRIREYEEAEGVFRTPIIALTAHAMIGDKERCLD 1316
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GM YLTKP+ +++ I R
Sbjct: 1317 AGMTDYLTKPLRRGDLLAAIAR 1338
>gi|333368314|ref|ZP_08460522.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. 1501(2011)]
gi|332977501|gb|EGK14274.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. 1501(2011)]
Length = 1148
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 161/283 (56%), Gaps = 17/283 (6%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
EM+++ I +AR +A +S+ KS FLAN+SHELRTP+ +I G + +L LT EQ
Sbjct: 345 EMEMQNIFIR--EARDQAVSSSQAKSAFLANISHELRTPLNSIDGFINLLARHGDLTAEQ 402
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
V I+KSS LL L+N +LD SK+E+GK+ L+ EF L + +++DMFS +
Sbjct: 403 DLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDKHEFSLYSAIYDVMDMFSPLAAEKG 462
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAE 577
+ + +++P + GD RV Q+ +NL+ N+IKFT G ++IR G E D + +
Sbjct: 463 LRMAVMYYNDVPNTIIGDALRVKQVLTNLVGNAIKFTDVGEVVIRVGIDEVEDVT--VID 520
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
P+++ K++ Q++ + + + + DTG G+ + +F+SF QG
Sbjct: 521 MPSEQDSI------KVEDQSS------QPSGSMIHIAIQDTGHGLSEQAKSYLFKSFSQG 568
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
DPS TR++GGTGLGL I + L MGG I ++ G Q+
Sbjct: 569 DPSITRQYGGTGLGLVISKQLTRLMGGNIGFYNNDNAGAEGQV 611
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES------SRRR 1001
+G+ +L +D +V +L ++G V G AV+ +++ + ++ S +
Sbjct: 811 QGVTVLAVDDHLPNLLVLDALLSELGIKVITANSGYDAVDIISKQIMYDTYEPSDVSIDQ 870
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE------HGARNIPIVAL 1055
+ + + DL+ MD QMP+M G EA +IR+ E + + + +PI+AL
Sbjct: 871 DVDAAKNVKKGKNAKIDLVFMDVQMPRMSGDEAAKKIRQLEEDAQKQHPNYHKRLPIIAL 930
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
TAH + + K + G++ Y+ KPI +++ + R
Sbjct: 931 TAHGLADGKDKLIAAGIDDYVGKPISRPQLLQILQR 966
>gi|254424298|ref|ZP_05038016.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
gi|196191787|gb|EDX86751.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
Length = 926
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 204/387 (52%), Gaps = 32/387 (8%)
Query: 379 VCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPM 438
VC++ + +L +T+ V+ + ++ + R +A A +S FL +SHE+RTP+
Sbjct: 333 VCVIAVRMGYLLPVTSPVAVVLSTYVWVV--VWQRLQANALLQVRSAFLNTVSHEIRTPL 390
Query: 439 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
AI+ L E+L+ + L N Q + SS L+ L+N +LD SK+ESG++ + + +
Sbjct: 391 NAIVNLSEMLQ-ETPLDNRQREYAESLHSSSQTLMTLINDVLDFSKIESGQLLIGDYPVN 449
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
L + +E +++ + + + N+E V ++ N+P +R DP R+ QI SNL++N++KFT+ G
Sbjct: 450 LVETIERSIELLAPRAALKNIELVYAIAPNVPALIRSDPVRLQQILSNLLSNAVKFTAVG 509
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGR---AFRTKLKQ-------QANNAMNFREDNK 608
+ +R S++ +GR + R+KL +AN A R D
Sbjct: 510 EVSVRVRASPSHQSRS-------HTLWGRLLASVRSKLPDWIWPHWLRANYAERSRPDQG 562
Query: 609 L-ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 667
L LCFEV DTG GI ++ +F F QGD ST + +GGTGLGLSI + L+ +MGG+I
Sbjct: 563 LYELCFEVKDTGTGIPAARIPHLFRPFSQGDISTAQMYGGTGLGLSISKRLIRRMGGDIW 622
Query: 668 VVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVS- 726
G+ Q + A QI A P ++ G+ ++ + R+++++
Sbjct: 623 AKSTLRKGS--QFFFTFDA-----QIAQATLPPPNYLIGLRGTRLLVVDANPTRREQLAR 675
Query: 727 TLETSEWHGLTQILRELLDPISPVSSN 753
TL+T G+ +L E L P+ +N
Sbjct: 676 TLQTI---GILTLLAESLAEARPLMNN 699
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 26/136 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED Q VA ++LE +G VV G++ + AL
Sbjct: 801 LKILVAEDNRTNQKVALRLLELLGYRADVVNTGIEVLTALEHQ----------------- 843
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
R+D+ILMD +MP+MDG EAT IR + I+A+TA+ M++D + CL
Sbjct: 844 ------RYDVILMDMRMPEMDGVEATQRIRHMPHH---KETWIIAMTANTMDSDRELCLS 894
Query: 1070 VGMNAYLTKPIDSERM 1085
VGM+ YL KPI + +
Sbjct: 895 VGMDDYLCKPIKRDAL 910
>gi|407682658|ref|YP_006797832.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407244269|gb|AFT73455.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 958
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 145/280 (51%), Gaps = 36/280 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DAR KAE S KS FLA+MSHE+RTP+ I G+L+++ S +LT EQ + K S
Sbjct: 564 DAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASS-ELTEEQKHYLSLAKFSIQ 622
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+G++++E FD+ + LE L +++ C +
Sbjct: 623 GLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAIMCQEKGLALHFHFDLQGF 682
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GD R QI SNL+ N++KFT SG I +
Sbjct: 683 HVVQGDDVRFRQILSNLLGNAVKFTDSGCIEV---------------------------T 715
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T ++Q A DN L L V DTG GI Q K T+F+ F Q D STTRK GGTGL
Sbjct: 716 TSIQQNA--------DNSLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGL 767
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
GLSI + L MGG+IK+ G+ ++L + E+
Sbjct: 768 GLSISKQLCELMGGDIKLESVKGHGSTFSFTIMLEQADEA 807
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 23/139 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + Q++ + L T GL+A+EALN+M
Sbjct: 827 KVLIVEDNDINQVIVKQHLN--NHTTLSAKSGLEALEALNKMKVT--------------- 869
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD++LMDCQMP+MDG+EAT IR E+ N+PI+ALTA+AM D+++C+
Sbjct: 870 ------FDVVLMDCQMPEMDGFEATKRIRNGEAGERYLNVPIIALTANAMKGDKERCVNA 923
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ YL+KP D+ ++ +
Sbjct: 924 GMDDYLSKPFDAIDLIDKV 942
>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1284
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 35/278 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE + K++FLA MSHE+RTPM ++G+LE++ + L EQ + V ++ S A
Sbjct: 559 AKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELM-ALTPLDEEQRTLVSTMRDSGAA 617
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLR+++ ILDLSK+E+GK+ELE + +E + D+ + Q + + D+ ++P
Sbjct: 618 LLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAHQKGLALICDIDGSVPE 677
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+RGD GR+ QI NL N+IKFT G +++R
Sbjct: 678 RLRGDSGRLRQILFNLTGNAIKFTDRGRVVLR---------------------------- 709
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
Q A A + + L V+D+G GI +F+ F Q D STTR+ GGTGLG
Sbjct: 710 --VQAAATA----DPTLIRLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLG 763
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
L+I LV +MGG I V G++ + + L E
Sbjct: 764 LAICTRLVERMGGRIGVESVPGRGSIFRFTVELARPPE 801
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
R L++ DC MP MDGYE +R E + G R PIVA+TA+A++ + ++CL GM+ Y
Sbjct: 1043 RHRLVITDCHMPVMDGYELARRLRLEEEKDGGRRTPIVAMTANALSGERERCLAAGMDDY 1102
Query: 1076 LTKPIDSERMVSTILRLTKNMPS 1098
L KP+ ++ + R + P+
Sbjct: 1103 LAKPVTLAQLSRVLARWLEARPA 1125
>gi|406955643|gb|EKD84035.1| hypothetical protein ACD_39C00287G0001, partial [uncultured
bacterium]
Length = 795
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 154/274 (56%), Gaps = 36/274 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+ KS FLANMSHE+RTPM AIIG+ ++ D LT++Q + + +++ ++
Sbjct: 52 AKTMAEAATETKSTFLANMSHEIRTPMNAIIGMSQLALQTD-LTHQQRNYIEKVQLAAQN 110
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GKM ++ T+F L+ L + S++ +E + D++ ++P
Sbjct: 111 LLGIINDILDFSKIEAGKMAIDKTDFWLEDVLNNFAIITSLKAEEKGIELIFDIAPDVPL 170
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP R+ QI +NL NN++KFT SG I++
Sbjct: 171 GLVGDPLRLNQILTNLGNNAVKFTDSGEIMV----------------------------- 201
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++Q+AN ++ L F V D+G G++QS+ E +F F Q D S +RK GGTGLG
Sbjct: 202 GVEQRAN------DEKSAELHFWVKDSGTGMNQSQQEKLFMPFSQVDDSASRKSGGTGLG 255
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
L+I + LV M G+I VV + G+ LG
Sbjct: 256 LAISKNLVEDMHGKIWVVSEPGHGSTFHFTARLG 289
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 25/146 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G R+LL ED + Q +A ++L +V +V + G +A++ L E R+
Sbjct: 457 GARLLLVEDNEMNQELAIEVLRQVNISVILARQGQEALDIL------EKDRQ-------- 502
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FD ILMDCQMP MDGY+ T IR + G ++IPI+A+TA+AM D +K L
Sbjct: 503 --------FDGILMDCQMPVMDGYKTTRIIR---AIPGLQDIPIIAMTANAMAGDREKAL 551
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTK 1094
GMN ++ KPID +M +T+ R K
Sbjct: 552 DAGMNDHIAKPIDVSKMFATLARWIK 577
>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
Length = 1346
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 150/273 (54%), Gaps = 37/273 (13%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
++ KS+FLANMSHE+RTPM ++G+ E+L D LT EQ V I +S LL +LN
Sbjct: 812 ASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD-LTKEQRECVEIIHRSGETLLTILND 870
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+G++ELEN +F+LQ+ +E+++ +F+ + + +E + + + V+GDP
Sbjct: 871 ILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFIEERA-LEVQGDPH 929
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ Q+ SNLI N+IKFT G +++ E LD +R+ R
Sbjct: 930 RLRQVLSNLIGNAIKFTERGEVVVEAELERLD----------ERRAHWR----------- 968
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
V DTG GI + +F+ F Q D STTR++GGTGLGL+I + L
Sbjct: 969 --------------ISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQL 1014
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
V MGG I V + G+ + + SS+ K
Sbjct: 1015 VEMMGGTIGVESEVGKGSTFTVRIPFRLSSQRK 1047
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 24/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P SS + S R +LLAED P+ Q VA LE++G T VV DG QAVEA
Sbjct: 1205 PSDSSATPSPTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEA---- 1260
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
L+G +D ILMD MP MDG+EAT +IR+ E+E G R+ PI
Sbjct: 1261 ----------ALRGG---------YDAILMDVHMPVMDGFEATAQIREREAERG-RHTPI 1300
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+A+TA+A+ + ++CL GM+ Y+ KP + + + + R
Sbjct: 1301 IAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLER 1339
>gi|406595687|ref|YP_006746817.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406373008|gb|AFS36263.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 958
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 145/280 (51%), Gaps = 36/280 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DAR KAE S KS FLA+MSHE+RTP+ I G+L+++ S +LT EQ + K S
Sbjct: 564 DAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASS-ELTEEQKHYLSLAKFSIQ 622
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+G++++E FD+ + LE L +++ C +
Sbjct: 623 GLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAIMCQEKGLALHFHFDLQGF 682
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GD R QI SNL+ N++KFT SG I +
Sbjct: 683 HVVQGDDVRFRQILSNLLGNAVKFTDSGCIEV---------------------------T 715
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T ++Q A DN L L V DTG GI Q K T+F+ F Q D STTRK GGTGL
Sbjct: 716 TSIQQNA--------DNSLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGL 767
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
GLSI + L MGG+IK+ G+ ++L + E+
Sbjct: 768 GLSISKQLCELMGGDIKLESVKGHGSTFSFTIMLEQADEA 807
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 23/139 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + Q++ + L T GL+A+EALN+M
Sbjct: 827 KVLIVEDNDINQVIVKQHLN--NHTTLSAKSGLEALEALNKMKVT--------------- 869
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FD++LMDCQMP+MDG+EAT IR E+ N+PI+ALTA+AM D+++C+
Sbjct: 870 ------FDVVLMDCQMPEMDGFEATKRIRNGEAGERYLNVPIIALTANAMKGDKERCVNA 923
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ YL+KP D+ ++ +
Sbjct: 924 GMDDYLSKPFDAIDLIDKV 942
>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
Length = 1199
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 185/398 (46%), Gaps = 50/398 (12%)
Query: 312 YGSKVPPGHVIHVQNAKLGH--KQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYK 369
YGS V ++HV N G +++ M +F LP
Sbjct: 516 YGSDVIDTDLVHVSNLDFGDPSRRHEMRCWFKQKASLPWTA------------------- 556
Query: 370 TLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLAN 429
I+AS + +I + I + + +++ AE L +AEA++ KS+FLA
Sbjct: 557 -----INASAAVFIITVLVGYIFHAAIKRIVEVEAECHEMLKLTVRAEAADVAKSKFLAT 611
Query: 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK 489
+SHE+RTPM ++G+L++L D +L Q S L+ L+ +LD +K+ESG+
Sbjct: 612 VSHEIRTPMNGVLGMLQMLM-DTELDTSQEDYAKTAHASGRELISLIGDVLDQAKIESGR 670
Query: 490 MELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN-IPRNVRGDPGRVFQIFSNLI 548
+ELE FDL L+ ++ MFS + S +E + + N + V GDP R QI NL+
Sbjct: 671 LELEAVPFDLHSVLDSVLSMFSGRSSEKGIEKLAVYASNCVSEIVIGDPERFRQIIQNLV 730
Query: 549 NNSIKFT--SSGHIIIR--------GWCENLDTSKNTAEFPTDRKKFGRAFRT------- 591
NSIKFT + GHI + G + D P DR T
Sbjct: 731 GNSIKFTRDNGGHIFVTVHLVEEVTGQLDTKDAVLVNGSVPVDRDPSNSVCETLSGYPVV 790
Query: 592 -KLKQ----QANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
+ K + NN + +E + + + V+DTG GI +F F QGD ST+R +G
Sbjct: 791 NRWKSWENFKKNNINSMKESDVVRVLVTVEDTGVGISPDAQSRIFTPFVQGDSSTSRTYG 850
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
GTG+GLSI + LV M GEI V + + G+ + L
Sbjct: 851 GTGIGLSISKCLVELMDGEIGFVSEANIGSTFSFTVSL 888
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R ++ F+E +GS R++Q + S ++ G +IL+ +D + + VA L+
Sbjct: 1023 RSSVLAAAFQE--TVGSGRKNQ--VHKKTPSALGNLVRGKQILVVDDNMVNRRVAEGALK 1078
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V+ +G +AV+ L E P RFD MD MP+MD
Sbjct: 1079 KYGAIVTCANNGSEAVKML--------------------EPPH--RFDACFMDRHMPEMD 1116
Query: 1031 GYEATIEIRKSESEHGAR-----------------NIPIVALTAHAMNADEKKCLGVGMN 1073
G EAT IR E R + PI+A+TA + ++CL GM+
Sbjct: 1117 GLEATQRIRSMEELVNGRIASGEVPMVMFGNVAYWHTPILAMTADVIQGANEECLRCGMD 1176
Query: 1074 AYLTKPIDSERMVSTILRL 1092
+++KP + ++ + + R
Sbjct: 1177 DFVSKPFEEAQLYNALARF 1195
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 153/284 (53%), Gaps = 36/284 (12%)
Query: 396 VSKEMKLRAEL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E + R EL + A+R AEA+N KS+FLA MSHE+RTPM A+IG+ +L D
Sbjct: 1109 LEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLL-D 1167
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
+LT++Q V + S ALL ++N ILD SK+ESGK+ELE F+++ +E+++D+ +
Sbjct: 1168 TELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLA 1227
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ + ++E + +P + GD R+ QI +NL+NN+IKFT G +++
Sbjct: 1228 AKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVV--------- 1278
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
S + P + K N + F + DTG GI + +F
Sbjct: 1279 SVRSQPSPNQKNK----------------------NCCEIIFTIKDTGIGIAPETMDLLF 1316
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ F Q D S TRK+GGTGLGL I + L MGG + V + G
Sbjct: 1317 QPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVG 1360
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 25/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA IL+K+G VV +GL+ +EAL R
Sbjct: 1554 LRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQRQF---------------- 1597
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD MP+MDG +A+ I ++ S + I+A+TA+AM D + CL
Sbjct: 1598 -------YDVVLMDVNMPEMDGLKASQIICQTWSP--SSRPYIIAMTANAMRGDREACLA 1648
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ Y++KP+ E + +
Sbjct: 1649 AGMDHYISKPLQLEELAKAL 1668
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D P + + E P G +A+ +++ +A
Sbjct: 1408 LSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMA------------ 1455
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD+ ++D QMP+MDG +IR+ S +++P+V LT+ +
Sbjct: 1456 ----------FDIAILDVQMPEMDGLTLARQIRQRPS---YQHLPLVILTSWGQ--PDTD 1500
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
+ A L KPI ++ + N P A+
Sbjct: 1501 LSDIEFAACLNKPIKQSQLYDVLASTLGNQPIRAS 1535
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 154/266 (57%), Gaps = 10/266 (3%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+R+AEA+N KS+FLA MSHE+RTPM A+IG+ ++L D +Q V ++ S A
Sbjct: 666 AKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTPQQQ-DFVETVRSSGDA 724
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ELE FDL+ +E+ + + + + + N+E V + +P
Sbjct: 725 LLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAPKAAQKNIELVYLIQPQVPT 784
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR---GWCENLDTSKNTAEFPTDRKKFGRA 588
+ GD R+ Q+ NL+NN+IKFT G +++ G +++ +N++ + +
Sbjct: 785 QIVGDMTRLRQVLMNLLNNAIKFTERGEVVLSVELGAGDSVKQGENSSPLHPSLVRLRPS 844
Query: 589 FR-----TKLKQQANNAM-NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
R T L+ + A + ++ + + F + DTG GI K E +F F Q D S T
Sbjct: 845 LREAAPTTTLRTSSRQARPSASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMT 904
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKV 668
R++GGTGLGL I + L MGG + V
Sbjct: 905 RRYGGTGLGLVISKRLSKMMGGTLWV 930
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 25/152 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAEDT + Q VA +L+K+G + VV +G++ ++AL Q P
Sbjct: 1130 LRILLAEDTIVNQKVALLMLQKIGYSADVVTNGVEVLKAL---------------QKQP- 1173
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+LMD MP+MDG E I + E + G R I+A+TA+AM D + CL
Sbjct: 1174 -------YDLVLMDVHMPEMDGLETARRICQ-EWKVGFRP-HIIAITANAMRGDREVCLA 1224
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
GM+ Y++KPI +++ + + + E T
Sbjct: 1225 AGMDDYISKPIQLQKLAQALSKCPRQRSLEVT 1256
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P SN L+G R+L+ +D + C+I+ LQA
Sbjct: 970 PAVPEAEFSNSPMQLQGKRLLIVDDN----LTNCQII------------SLQAESWEMET 1013
Query: 993 LAAESSRRR--SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
AA+S++ L QG +FD+ ++D +MP MDG +IR+ + G +N+
Sbjct: 1014 YAAKSAKEALAQLAQGI--------QFDIAILDMEMPAMDGITLARQIRR---QSGCQNL 1062
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
P+V LT+ V A L+KPI ++ I R+ N PSEA+ T
Sbjct: 1063 PLVILTSLGREETFSDFGDVEFAASLSKPIKQSQLYDVITRVLGNQPSEASIT 1115
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 150/263 (57%), Gaps = 23/263 (8%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
+K E + KS+FLANMSHE+RTPM +IG+ +L D +LT+EQ V + S+ A+L
Sbjct: 178 QKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALL-LDTELTDEQREYVEATRSSADAML 236
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
++N ILD SK+ESGK++LE+ F+L +EE +D+ + + + +++ + D IP+ +
Sbjct: 237 TIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKIL 296
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD R+ QI NLI N++KFT+ G + I+ K + DR +
Sbjct: 297 VGDVTRLRQILVNLIGNAVKFTNEGEVFIQ--------VKPAPKHFNDRDR--------- 339
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+A + + L F V DTG GI K +F+SF+Q D STTR +GGTGLGL+
Sbjct: 340 -----SASSITGPDMWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLA 394
Query: 654 IVRTLVNKMGGEIKVVKKNSPGT 676
I + L MGG+I+V G+
Sbjct: 395 ICKKLSELMGGDIQVESDAGKGS 417
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 25/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLA+D P+ Q V +L ++G V +GL+ + AL+R
Sbjct: 590 LRILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRALDRQ----------------- 632
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+IL+D QMP++DG+E T IR E + +VA+T +A+ D +KCL
Sbjct: 633 ------PYDIILLDVQMPELDGFETTSSIR--ERWPLGKRPRVVAMTGNALLGDREKCLD 684
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTK 1094
GM+ Y++KPI + S + R K
Sbjct: 685 AGMDDYISKPIRIGELQSALERWAK 709
>gi|428320718|ref|YP_007118600.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428244398|gb|AFZ10184.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2192
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 154/283 (54%), Gaps = 39/283 (13%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
+ ++L+ E+I A A+A+N KS FLANMSHELRTP+ AI+G ++L L E
Sbjct: 1691 RTLELQREIIERQRAEDAAQAANRAKSTFLANMSHELRTPLNAILGFSQLLNRSSNLLQE 1750
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + I +S LL L+N++LDLSK+E+G+ L T FDL + L+++ +MF + N
Sbjct: 1751 QQEHLNIITRSGEHLLELINQVLDLSKIEAGRATLNQTNFDLHRLLDDIENMFQLPAQNK 1810
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
++ +++ +P+ VR D ++ QI NLI+N+IKFTS G I ++ KN
Sbjct: 1811 GLQLLVERMVGVPQYVRTDEIKLRQILINLISNAIKFTSEGGIYVK--------IKN--- 1859
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
++L Q + FEV+DTG GID S+ + +FE+F Q
Sbjct: 1860 -------------SELAHQ--------------IYFEVEDTGAGIDASELDKIFEAFVQT 1892
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+ GTGLGL+I R+ V MGGE+ V + GT+ +
Sbjct: 1893 KTGEESQQ-GTGLGLTIARSFVQLMGGEMTVSSRAGCGTIFKF 1934
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 43/168 (25%)
Query: 929 RRDQPCSSSNS-SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
+R+QP + + NQ R RIL+A+D + + K+L +G V +G +A+E
Sbjct: 1947 QREQPTRRVMAIAPNQPR----YRILVADDAFDNRQLLVKLLSAIGFEVYEAKNGREAIE 2002
Query: 988 ALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRK------- 1040
Q SP LI MD +MP MDGYEAT +I++
Sbjct: 2003 KWE--------------QYSPH---------LIFMDMRMPVMDGYEATKQIKEGNHRGIA 2039
Query: 1041 -SESEHGARNIP-------IVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+E+E +P I+A+TA + ++ L G + ++ KP
Sbjct: 2040 PTENEDFVGVVPPCLPQTAIIAITASSFEEEKAVVLSTGCDDFIRKPF 2087
>gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
Length = 887
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 171/314 (54%), Gaps = 46/314 (14%)
Query: 385 GCIC--ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
GC+ I++L N S++ ++ +LI+ R KAEA+N+ KS F+ANMSHE+RTP+ +I
Sbjct: 335 GCLTGRIIVLRNITSRK-QIEYDLIA---TREKAEAANHAKSDFIANMSHEIRTPLNGLI 390
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G +L L + Q+ + + S+ LL L+N ILDLSK+E+GK+EL N LQ+
Sbjct: 391 GFSSLLMKT-TLDDVQFHYINTVNNSAKQLLGLINDILDLSKIEAGKLELYNEMISLQEL 449
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
EE++DM + + N+E +LD+ ++P + DP + QI NL+ N++KFTS G I +
Sbjct: 450 AEEVIDMTAFTAHSKNLELLLDIPSSLPESALADPVCLKQILINLLGNAVKFTSGGEIEL 509
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
+ P+D + + L F V DTG GI
Sbjct: 510 K-----------IETVPSD----------------------NDPDYLVFIFSVRDTGIGI 536
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
+ +FE+F Q D STTRK+GGTGLGL+I L+ MG +++ ++SPG + +
Sbjct: 537 SPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQL--ESSPGQGSRFFF 594
Query: 683 LL----GASSESKQ 692
L G+++E K
Sbjct: 595 SLDLKTGSNTEHKH 608
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
DLI MD MP+M+G +A+ IRK + E+ PI+A+TA +++ ++C G++ +++
Sbjct: 799 DLIFMDIHMPEMNGLDASEAIRKLDHEYYC---PIIAVTADSLSEINEQCSRTGIDDFIS 855
Query: 1078 KPIDSERMVSTILR-LTKNMPSEATGTTR 1105
KP E + + + L K P + T R
Sbjct: 856 KPYTPETIQRAVHKWLKKPNPDKTVETGR 884
>gi|443477473|ref|ZP_21067318.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443017406|gb|ELS31856.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 758
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 216/471 (45%), Gaps = 98/471 (20%)
Query: 259 SGHIYLTSQEGYLLATS-TNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVP 317
SG +++ G L+ATS N PL N N +KA+DS+NPV+ Q ++S+ G
Sbjct: 96 SGLVFVLEPSGDLVATSLANQPLAINK----NRIKAMDSNNPVLAQSMQSMRSQLGDLAK 151
Query: 318 PGHVIHVQNAKLGHKQYYM------DTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTL 371
+ + +L ++Y++ D + LN + +++P M + + T+
Sbjct: 152 IQQTTRL-DFQLNGERYFLTASPIRDKYGLNW-----LVAVVVPESDFMEQININTQDTI 205
Query: 372 IILISA------------------------SVCILVIGCICILILTNGVSKEMKLRA--- 404
+ I A S + G + + NG ++ L +
Sbjct: 206 SLAIVALSLALSMSFFIAQLMSRFVRDLNKSATAIANGEMDQFVEVNGCAELEALASSFN 265
Query: 405 ELISHLD-------------------ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
++ S L A+ +AE ++ KS F+ANMSHELR+P+ AIIG
Sbjct: 266 QMASQLQTSFATLENRVQERTSELAVAKDRAEVASKAKSAFIANMSHELRSPLNAIIGFS 325
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
+++ L+ EQY + I +S LL L+N +LD SK+E+GK L + + DL + L++
Sbjct: 326 QVMLRTKNLSPEQYENINIIHRSGEYLLTLINNVLDFSKIEAGKNTLNSKDIDLYQLLDD 385
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
L DM ++ N +E +LD N+PR + D ++ Q+ NL+ N+IKFT G +++R
Sbjct: 386 LEDMLHLRAVNAGLELILDRGGNLPRYIHTDGVKLRQVLLNLLGNAIKFTQQGEVVLR-- 443
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
+ + +N+ E +L F+V DTG GI
Sbjct: 444 ---MSSIENS-----------------------------EPQSYSLNFQVSDTGVGIAPE 471
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+ + +FE+F Q + S GTGLGL+I R V MGG+I V + GT
Sbjct: 472 ELDQLFEAFSQTE-SGREAQEGTGLGLTISRQFVRLMGGDITVTSELGKGT 521
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+IL+ +D P+ + + K+L +G V +G +A+ M A
Sbjct: 556 KILVVDDKPINRQLLVKLLAPLGFEVKEASNGQEAI----VMWEAWQPH----------- 600
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
LI MD +MP MDGYEAT I KS ++ A I+ALTA + ++ L
Sbjct: 601 --------LIWMDMRMPVMDGYEATKYI-KSTTQGNA--TAIIALTASVLEQEKAIILSA 649
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNM 1096
G + ++ KP + + + LTK++
Sbjct: 650 GCDDFMRKPFKEQTIFAA---LTKHL 672
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 172/326 (52%), Gaps = 33/326 (10%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
IG + IL +K+ + + + +AEA++ KSQFLA +SHE+RTPM
Sbjct: 419 FFAIGFLVGYILYGAAVHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 478
Query: 441 IIGLLEILKSDDQLTNEQ--YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498
I+G+L +L D +L++ Q Y+ Q+ AL+ L+N +LD +K+E+GK+ELE+ FD
Sbjct: 479 ILGMLAMLL-DTELSSTQRDYAQTAQV--CGKALIALINEVLDRAKIEAGKLELESVPFD 535
Query: 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG 558
++ L++++ +FS + N +E + +SD +P V+GD GR QI NL+ NS+KFT G
Sbjct: 536 IRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKG 595
Query: 559 HIIIRGW--------------------CENLDTSKNTAEFPT-------DRKKFGRAFRT 591
HI ++ E++ + + + T D + +F+
Sbjct: 596 HIFVKVHLAEQSKDGAESKPALNGGVASEDITAASKPSSYNTLSGYEAADGRNSWDSFKH 655
Query: 592 KL-KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
L ++ + F + + L ++DTG GI + VF F Q D ST+R +GGTG+
Sbjct: 656 LLSSEELLTSSEFEASSNVRLMVSIEDTGIGIPLTAQGRVFMPFMQADSSTSRTYGGTGI 715
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GLSI + LV M G+I V + G+
Sbjct: 716 GLSISKCLVELMRGQISFVSRPRVGS 741
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 29/192 (15%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R +I ++ ++ +R+ P SS ++ K +L G +IL+ +D + + VA L+
Sbjct: 894 RASMIGACLQQVLELRKARQQHPEGSSPAT--LKSLLTGKKILVIDDNMVNRRVAAGALK 951
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
K GA V G A+ LLQ S FD MD QMP+MD
Sbjct: 952 KFGAEVVCAESGQVAL---------------GLLQIPHS-------FDACFMDIQMPQMD 989
Query: 1031 GYEATIEIRKSESEHGAR-----NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERM 1085
G+EAT +IR E E + ++PI+A+TA ++A ++CL GM+ Y++KP + E +
Sbjct: 990 GFEATRQIRMMEKEAKEKTKLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENL 1049
Query: 1086 VSTILRLTKNMP 1097
++ + K P
Sbjct: 1050 YKSVAKSFKANP 1061
>gi|402698893|ref|ZP_10846872.1| sensor protein GacS [Pseudomonas fragi A22]
Length = 921
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 165/310 (53%), Gaps = 33/310 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR++A ++ KS+FLANMSHE+RTP+ I+G +L+ +LT QY + I+KS+ +
Sbjct: 274 ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKS-ELTPRQYDYLSTIEKSADS 332
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L++T F+L+ L++ + + + ++E V + + P
Sbjct: 333 LLGIINEILDFSKIEAGKLVLDSTPFNLRDLLQDTLTILAPSAHEKSLELVSLVYRDTPL 392
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ QI +NL+NN+IKFT G I +R E+ D
Sbjct: 393 SLIGDPLRLKQILTNLVNNAIKFTREGTIAVRAMLEDEDD-------------------- 432
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
NNA D + L V DTG G+ +F++F Q D S +R+ GGTGLG
Sbjct: 433 ------NNA-----DGCVQLRISVQDTGIGLTSQDVRALFQAFSQADNSLSRQPGGTGLG 481
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL-GASSESKQIYDADFPNTVVVLATVGS 710
L I + LV +MGGEI V G++ + + L A +++ + A P V L
Sbjct: 482 LVISKRLVEQMGGEIGVESTPGEGSVFWISVKLPKARDDAEDLPAAPLPGRRVALLEKHD 541
Query: 711 MERMIISQWL 720
+ R + L
Sbjct: 542 LARQALQHQL 551
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL +D P ++ +LE +G+ V+ V G A+EA+
Sbjct: 672 RILCVDDNPANLLLVQTLLEDMGSKVTAVDSGYAAIEAVK-------------------- 711
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FDL+LMD QMP MDG E T +R+ E+ +PIVALTAHAM +++ L
Sbjct: 712 ---NEAFDLVLMDVQMPGMDGRETTEVVRQWETGQHNAPLPIVALTAHAMANEKRALLQS 768
Query: 1071 GMNAYLTKPIDSERMVSTILRLT 1093
GM+ YLTKPI ++ +L+ T
Sbjct: 769 GMDDYLTKPISERQLAQVVLKWT 791
>gi|409438237|ref|ZP_11265324.1| Sensor protein [Rhizobium mesoamericanum STM3625]
gi|408750103|emb|CCM76491.1| Sensor protein [Rhizobium mesoamericanum STM3625]
Length = 944
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 147/269 (54%), Gaps = 38/269 (14%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+AEA++ KS+FLANMSHE+RTPM ++G+ E+L D L Q + + I KS AL+
Sbjct: 401 RAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTD-LDTRQKTFIDIIVKSGNALVT 459
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+++GKM L T F+L + +E++ + S S N+E ++ + ++P V
Sbjct: 460 IINDILDFSKIDAGKMRLRPTTFNLLEAIEDVATLLSSTASEKNIELLVRTAPDLPSAVI 519
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD GR QI +NL+ N++KFT GH+++ G+
Sbjct: 520 GDAGRFRQIITNLVGNAVKFTERGHVLLDVGFAPG------------------------- 554
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+++ V+DTG GI K E++F+ F Q D S+TR+H GTGLGL+
Sbjct: 555 -----------AQDEIMASIRVEDTGIGIPDDKLESIFDKFSQIDSSSTRRHEGTGLGLA 603
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
I LV+ GG ++V + G++ + L
Sbjct: 604 ITAGLVDLFGGYLEVDSRPGEGSVFSVNL 632
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 24/129 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+AED + QIV +IL G + VV +G +AV+A +R
Sbjct: 816 VLVAEDNDVNQIVFTQILRGSGHSFLVVGNGQEAVDAWHRH------------------- 856
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
TPR +I+MD MP M+G++AT IR E G R +PI+ +TAHA+ AD CL G
Sbjct: 857 --TPR--IIMMDVSMPVMNGHDATRAIRDRERGQGHR-VPIIGVTAHALEADRDLCLEAG 911
Query: 1072 MNAYLTKPI 1080
M+ Y++KPI
Sbjct: 912 MDDYMSKPI 920
>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
lavamentivorans DS-1]
gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
lavamentivorans DS-1]
Length = 744
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 153/273 (56%), Gaps = 26/273 (9%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A +A+ +N KS FLA MSHE+RTPM +IG+ ++L D +L Q S ++ S A
Sbjct: 186 ALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLL-LDTKLDPAQRSYAEAVRASGEA 244
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+GK+ L+ FD + LE + ++ + + + +E V ++S ++PR
Sbjct: 245 LLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELLAPRAFDKGLEIVTEISPSVPR 304
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL N+IKFT G + +R E +TS P R+
Sbjct: 305 MLMGDEARIRQILLNLAGNAIKFTGRGGVALRLLRE--ETS------PAGRR-------- 348
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++ + + ++ L EV+DTG G+D+ E +F+ F Q D S R++ GTGLG
Sbjct: 349 ---------IDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLG 399
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
L+I + LV M G I+V + G++ + +L L
Sbjct: 400 LAITKRLVGAMEGRIEVESEEGRGSVFRAHLPL 432
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED + ++ +LE G TV + DG +AV AL
Sbjct: 606 LNVLVAEDNEINALLTRTLLEHTGHTVRLARDGAEAVAAL-------------------- 645
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E + DL+LMD MP MDG+ AT IR E H A +PI+ALTA+AM D + CL
Sbjct: 646 EADTGGKIDLVLMDLHMPGMDGFTATARIRDLEMPHAA--LPIIALTANAMADDRQACLD 703
Query: 1070 VGMNAYLTKPI 1080
GM+ YL+KP+
Sbjct: 704 AGMDDYLSKPV 714
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1820
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 153/284 (53%), Gaps = 36/284 (12%)
Query: 396 VSKEMKLRAEL----ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E + R EL + A+R AEA+N KS+FLA MSHE+RTPM A+IG+ +L D
Sbjct: 1112 LEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLL-D 1170
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
+LT++Q V + S ALL ++N ILD SK+ESGK+ELE F+++ +E+++D+ +
Sbjct: 1171 TELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLA 1230
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
+ + ++E + +P + GD R+ QI +NL+NN+IKFT G +++
Sbjct: 1231 AKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVV--------- 1281
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
S + P + K N + F + DTG GI + +F
Sbjct: 1282 SVRSQPSPNQKTK----------------------NCCEIIFTIKDTGIGIAPETMDLLF 1319
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ F Q D S TRK+GGTGLGL I + L MGG + V + G
Sbjct: 1320 QPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVG 1363
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 30/153 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA IL+K+G VV +GL+ +EAL R
Sbjct: 1557 LRILLAEDIVVNQKVALLILKKLGYRADVVANGLEVLEALQRQ----------------- 1599
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD MP+MDG +A+ I ++ S R+ P I+A+TA+AM D + CL
Sbjct: 1600 ------SYDVVLMDVNMPEMDGLKASQIICQTWS---PRSRPYIIAMTANAMRGDREACL 1650
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
GM+ Y++KP+ E + L K PS ++
Sbjct: 1651 AAGMDHYISKPLQLEELAKA---LGKCHPSTSS 1680
Score = 40.0 bits (92), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D P + + E P G +A+ +++ +A
Sbjct: 1411 LSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMA------------ 1458
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD+ ++D QMP+MDG +IR+ S +++P+V LT+ +
Sbjct: 1459 ----------FDIAILDVQMPEMDGLTLARQIRQRPS---YQHLPLVILTSWGQ--PDTD 1503
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
+ A L KPI ++ + N P A+
Sbjct: 1504 LSDIEFAACLNKPIKQSQLFDVLAASLGNQPIRAS 1538
>gi|374291160|ref|YP_005038195.1| putative hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357423099|emb|CBS85942.1| putative hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 905
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 162/322 (50%), Gaps = 37/322 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
++R +AE + KS FLA MSHE+RTPM ++G+L +L+ D L Q TV +++S+
Sbjct: 192 ESREQAEEATKAKSAFLATMSHEIRTPMNGVLGMLGLLERTD-LDEHQRDTVATMRESAS 250
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALLR+++ ILD SK+E+GKM+LE + +E + + + + + + IP
Sbjct: 251 ALLRIIDDILDFSKIEAGKMDLERVPLSVPALVEGVAETLAPAAGAKGLALLTYVDPAIP 310
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + GDP R+ QI NL N+IKFT +G +++R E TS AE P R
Sbjct: 311 QALLGDPVRLRQILFNLAGNAIKFTETGRVVLRAELETA-TSDGDAE-PLLR-------- 360
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+A+C DTG GI +S + +F+ F Q + STTR+ GGTGL
Sbjct: 361 ------------------IAVC----DTGIGIAESTCQRLFQPFTQAESSTTRRFGGTGL 398
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD----FPNTVVVLA 706
GLSI R L MGGEI V + G+ L L L ++ + V+L
Sbjct: 399 GLSISRRLAALMGGEIGVESEPGAGSTFWLRLPLARTAAPAPAENGSDTIGLDGLTVLLG 458
Query: 707 TVGSMERMIISQWLRKKKVSTL 728
ER ++++L + L
Sbjct: 459 VPDDTERGFLARYLEQAGARVL 480
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 23/170 (13%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
QP S+ + S ++ + +G IL+AED P+ + V L+ +G + P G +A+ AL+
Sbjct: 611 QP-SAPAAPSQEEAMAQGRLILVAEDNPVNRKVLLMQLQALGYAAEMAPGGAEALAALDA 669
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG----A 1047
M RRR + L+L D QMP++DG+E T IR +E++ G
Sbjct: 670 M---RQGRRR---------------YALLLTDVQMPEIDGFELTRRIRAAEADIGNSGLG 711
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
+PIVA+TA+A AD + GM+ L+KP++ ++ + R P
Sbjct: 712 ARLPIVAITANAAPADVESYRAAGMDDVLSKPLELSQLAVALARWMPPAP 761
>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
Length = 762
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 173/335 (51%), Gaps = 39/335 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A + A+ +N KS+FLANMSHE+RTPM +IG+ E++ D +L +Q I KS
Sbjct: 228 EACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELIL-DTELDEDQQMYAETISKSGS 286
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N IL+ SK+E+GK+EL+N F+LQ +E++V + S + + VE L + ++P
Sbjct: 287 ALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITLRYAPDLP 346
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
GD GRV Q+ +N++ N+IKFTS+G++ I D S A+ P +
Sbjct: 347 EFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAI-------DVSG--AKGPKGYQ------- 390
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
L EV DTG GI + + + +F +FEQ D + TR GTGL
Sbjct: 391 --------------------LGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGL 430
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGS 710
GL+I L++ MGG + V G++ + L L + + DF + V
Sbjct: 431 GLAISSRLLSLMGGRVTVKSVAGKGSVFTIRLPLTECDAVPSVQEGDFDFKGLTCLIVDD 490
Query: 711 ME--RMIISQWLRKKKVSTLETSEWHGLTQILREL 743
+E R I+S+ L V + + ++L +L
Sbjct: 491 LELNRSILSERLTSWGVQCFQAESANRALELLADL 525
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 24/154 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+AED Q+V ++L+ +++ +G +AVE +
Sbjct: 629 KLLIAEDNRTNQLVVTRMLKNDNYEITIAGNGAEAVELFKK------------------- 669
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D P DLILMD MP MDG EAT++IR+ E+ PI+ALTA+A+ A ++KCL
Sbjct: 670 --DRP--DLILMDMMMPVMDGVEATLKIRELEAVAHEAGCPIIALTANALEAHKEKCLAA 725
Query: 1071 GMNAYLTKPIDSERMVSTILR-LTKNMPSEATGT 1103
GM+ +L+KPI+ + ++ T+ + + + E TGT
Sbjct: 726 GMDDFLSKPINKKSLLETLEKWVIQQDRREKTGT 759
>gi|405363367|ref|ZP_11026321.1| two-component hybrid sensor and regulator [Chondromyces apiculatus
DSM 436]
gi|397089775|gb|EJJ20674.1| two-component hybrid sensor and regulator [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 915
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 162/319 (50%), Gaps = 40/319 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLA MSHE+RTPM AIIG+ +L D LT EQ V I++SS ALL LLN +
Sbjct: 241 NQAKSLFLATMSHEIRTPMNAIIGMTGLLL-DRALTEEQRDFVATIRQSSEALLTLLNDV 299
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+G+ E E FDL++ +E ++D+ +V+ S ++ D++ +P+ + GD R
Sbjct: 300 LDFSKIEAGRFEAELRPFDLRQCVESVLDLLAVRASEKGLDLGCDIAPQVPQMLVGDASR 359
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ NL+ N++KFT G ++ ++ ++ AE+
Sbjct: 360 IRQVLLNLVGNALKFTEHGGAVVSVEGASVSGAEGAAEW--------------------- 398
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
AL F V DTG GI + + +F+ F Q D S +R+ GGTGLGL+I + LV
Sbjct: 399 ----------ALTFSVQDTGPGIPEDRRAGLFQPFNQLDASVSRRFGGTGLGLAISKRLV 448
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD-------FPNTVVVLATVGSME 712
MGG + V + G L A S + Q Y V++ ++
Sbjct: 449 EAMGGTLWVESEGIAGRGTTFSFTLRAQS-APQAYAVHLRQEQPLLQGRRVLIVDDNALF 507
Query: 713 RMIISQWLRKKKVSTLETS 731
R ++ + LR V +ET+
Sbjct: 508 RRLLGRQLRAWGVEPVETA 526
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 27/143 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILL ED Q +A +LE++G V +G QA+ A+++
Sbjct: 641 LDILLVEDNATNQKLALLVLERLGYRADVALNGRQALHAVSQK----------------- 683
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
R+D++LMD QMP+MDG EAT IR+ E R P ++A+TA+AM++D ++C
Sbjct: 684 ------RYDVVLMDLQMPEMDGLEATRRIRQ---ELPPRAQPWVIAMTANAMDSDREQCF 734
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ +L KPI + + S +LR
Sbjct: 735 SAGMDDFLGKPIRVDALTSALLR 757
>gi|407700554|ref|YP_006825341.1| diguanylate cyclase [Alteromonas macleodii str. 'Black Sea 11']
gi|407249701|gb|AFT78886.1| GGDEF domain protein [Alteromonas macleodii str. 'Black Sea 11']
Length = 1395
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 158/297 (53%), Gaps = 37/297 (12%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
K L+A+ A +AE + KS+FLANMSHE+RTPM +IG+L +LK + LT E
Sbjct: 826 KTASLKAQASDLKQALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSN-LTTE 884
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
QY V S+ +LL L+N ILD SK+E+ K+ELE+ +FD++ +E + +
Sbjct: 885 QYQRVNIASSSANSLLVLINDILDFSKIEADKLELESVDFDVRGLIESIAQSVAHLAQEK 944
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+E V+D+S + DP R+ QI +NL++N++KFT G + + TAE
Sbjct: 945 GLEVVVDVSKISESKINSDPSRIQQILTNLLSNAVKFTEKGELSV------------TAE 992
Query: 578 -FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
P+D K N L V DTG GI SK +F++F Q
Sbjct: 993 LLPSDGK-----------------------NSALLHISVADTGIGIPASKLPHLFDAFTQ 1029
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
D STTR++GGTGLGLSI + L +GG+I V + G+ + +G +++ + +
Sbjct: 1030 VDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTELGNGSRFDVTCEVGYAAQQESV 1086
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 19/146 (13%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED + Q+VA ++E G V V +G++A++ L R ++
Sbjct: 1268 RVLLVEDNVINQMVATNVIESGGYEVDVANNGVEALDLLKRSKHEQA------------- 1314
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
++ I+MDCQMP+MDG+EAT IR + + IPI+A+TA+AM D+ C+
Sbjct: 1315 ------YNAIVMDCQMPEMDGFEATKLIRYGAAGENYKTIPIIAMTANAMQGDKDMCMEA 1368
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNM 1096
GM+ +LTKPI+ +++ ST+ + T +
Sbjct: 1369 GMDDFLTKPIEHDKVTSTLQKWTNKL 1394
>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 758
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/399 (32%), Positives = 198/399 (49%), Gaps = 52/399 (13%)
Query: 280 LLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKL-GHKQYYMDT 338
L + G LV + +M Q L S +P V + N L H++ +
Sbjct: 258 FLGHGIVGGKLVNGAEHGRIAARMALQILDGTAPSALPV--VKEIANRFLFDHRE--LTR 313
Query: 339 FFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSK 398
F L+ K LP G +I+ R + +A++R + LI S+ I ++ I L L + K
Sbjct: 314 FNLDEKALP-KGSVIVHRPRNIFEANKRLF-----LIFGSIVIALLVIIISLTLVVHIRK 367
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNE 457
+ L+ + ARRKA+ +N KS FLA+MSHE+RTP+ I+GL E+ + + +
Sbjct: 368 QTLLQLQ-----SARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELAIGNPGNPGVQ 422
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
+Y T+ I++S LL ++N ILD SKVE+GK+EL+ F+ + LE + F
Sbjct: 423 EYLTL--IRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREK 480
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
V L L++ +P+ V GD R+ QIF NL+ N++KFT G I +R
Sbjct: 481 GVTLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELR-------------- 526
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
T L + N+A ++ L FE+ D+GCGI K +++FE F Q
Sbjct: 527 ------------LTGLTSEENSA-------RMMLHFEIMDSGCGIPADKQDSIFERFTQA 567
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TR + GTGLGL+IV+ L+ MGG I V GT
Sbjct: 568 ARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTEGVGT 606
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+++GL +L+ ED P+ ++ K LEK+G V +G +A++ LLQ
Sbjct: 633 LVQGLSVLVTEDNPINRLFLQKSLEKLGHRVICAVNGQEALD---------------LLQ 677
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
T D +LMD QMP MDG AT IR E ++P++ALTAHA++ D +
Sbjct: 678 --------TATVDCVLMDIQMPVMDGSMATRHIR----ERFGHSLPVIALTAHALHGDRE 725
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRL 1092
K L G + YL KP+ + + I R+
Sbjct: 726 KYLEDGFDEYLAKPVSIKDLTKIIARV 752
>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 1156
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 153/286 (53%), Gaps = 43/286 (15%)
Query: 408 SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKK 467
S L A+RKAE S KS+FLANMSHE+RTP++AI+G +++LK ++ + + V I
Sbjct: 777 SLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKKEN-IEKKAKEYVDIIDT 835
Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD 527
SS LL+++ ILD SK+ESGK+E++ +F + E E ++ +F +C+ ++ L L +
Sbjct: 836 SSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETIIHLFLAKCAEKDIALTLILDE 895
Query: 528 NIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGR 587
++P + DP R+ QI SNL++N+IKFT G
Sbjct: 896 SLPETIHTDPLRIKQIISNLLSNAIKFTDQG----------------------------- 926
Query: 588 AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
K+ N F L V D G GI + K +FESF Q D STTR++GG
Sbjct: 927 ---KKITVTINYKNGF-------LNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGG 976
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
TGLGL+I LV +GGE+ V K G+ + Y + SE K I
Sbjct: 977 TGLGLTISYRLVKILGGELHVKSKVGAGS--EFYFSIKV-SEGKDI 1019
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 23/149 (15%)
Query: 944 KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSL 1003
K + ++LL ED Q+ ILE + V+ +G++AVEA +
Sbjct: 1028 KMTFDNKKVLLVEDVKTNQLFMSIILEGLHFEVATADNGIEAVEAFKQ------------ 1075
Query: 1004 LQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNAD 1063
+DLILMD MPKM+G EAT +I E E+ + PI+ALTA+A+ D
Sbjct: 1076 -----------NSYDLILMDEHMPKMNGIEATKQILAIEGENNLPHTPIIALTANAIKGD 1124
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
++ L GM+ Y+TKPI+ V + ++
Sbjct: 1125 RERFLKAGMDEYVTKPINQNIFVKVLRKV 1153
>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1100
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 182/352 (51%), Gaps = 34/352 (9%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE++ KS+FLANMSHE+RTP+ A+IG+ +L D L +Q + I+ S A
Sbjct: 438 AKIAAESATRAKSEFLANMSHEIRTPLNAVIGMTTLL-LDTHLDPQQQNFTETIRSSGEA 496
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+ESGK++L+ F+L+ +EE +D+ + + +E + P+
Sbjct: 497 LLTLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIASKAGEKKLELAYLIYPPTPK 556
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI N+++N++KFT +G +++ T
Sbjct: 557 TIVGDHNRLRQILVNILSNAVKFTPAGEVVV-------------------------TVTT 591
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
K+ + + NF + K + F + DTG GI + E +F+SF Q D STTR +GGTGLG
Sbjct: 592 KILSKLSEVDNFPQ--KYEIQFAIKDTGIGIPNDRIEKLFQSFSQVDSSTTRHYGGTGLG 649
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L+I + LV M G+I V + G+ L++ ++ + AD NT + G
Sbjct: 650 LAISKQLVELMDGQIWVESEVDRGSTFNFTLIVESTQDQ-----ADIHNTKEIHPLSGK- 703
Query: 712 ERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSRE 763
+I+ + ++V L+ W +T+ + + +S + + FD R+
Sbjct: 704 RILIVDNNITNQQVLILQMQCWKIITRAATSVQEALSLLQAEQFDLAILDRQ 755
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 25/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED + Q + +LE++G + +G + +EAL+R P
Sbjct: 847 LRILVAEDFVVNQKMILLMLERMGYRADIANNGFEVLEALHR---------------QP- 890
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+LMD QMP+MDG EAT IR++ + I+A+TA+AM D++ CL
Sbjct: 891 -------YDLVLMDVQMPEMDGLEATRSIRQNTT--SCPQPRIIAITANAMQGDKEACLE 941
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KP+ E +V+ +
Sbjct: 942 AGMDDYLSKPVRVEELVAAL 961
Score = 40.0 bits (92), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
+FDL ++D QMP+MDG T IR+ S +N+P+V L + + ++ +
Sbjct: 746 QFDLAILDRQMPEMDGVMLTSAIRQLPS---CQNLPLVMLNSLGNDQITEQNSEADFAGF 802
Query: 1076 LTKPIDSERMVSTI--------LRLTKNMPSEA 1100
L KP+ ++ + + ++LT P++A
Sbjct: 803 LNKPVKQSQLYNLLVAIFTGQSIKLTSYHPNQA 835
>gi|345302947|ref|YP_004824849.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
gi|345112180|gb|AEN73012.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
Length = 1346
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 150/273 (54%), Gaps = 37/273 (13%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
++ KS+FLANMSHE+RTPM ++G+ E+L D LT EQ V I +S LL +LN
Sbjct: 812 ASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD-LTKEQRECVEIIHRSGETLLTILND 870
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+G++ELEN +F+LQ+ +E+++ +F+ + + +E + + + V+GDP
Sbjct: 871 ILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFVEER-ALEVQGDPH 929
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ Q+ SNLI N+IKFT G +++ E LD +R+ R
Sbjct: 930 RLRQVLSNLIGNAIKFTERGEVVVEAELERLD----------ERRAHWR----------- 968
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
V DTG GI + +F+ F Q D STTR++GGTGLGL+I + L
Sbjct: 969 --------------ISVRDTGIGIPPDRLAHLFQPFTQLDGSTTRRYGGTGLGLAISKQL 1014
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
V MGG I V + G+ + + SS+ K
Sbjct: 1015 VEMMGGTIGVESEVGKGSTFTVRIPFRLSSQRK 1047
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 24/159 (15%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P SS + S+ R +LLAED P+ Q VA LE++G T VV DG QAVEA
Sbjct: 1205 PSDSSATPSSTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEA---- 1260
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
L+G +D ILMD MP MDG+EAT +IR+ E+E G R+ PI
Sbjct: 1261 ----------ALRGG---------YDAILMDVHMPVMDGFEATAQIREREAELG-RHTPI 1300
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+A+TA+A+ + ++CL GM+ Y+ KP + + + + R
Sbjct: 1301 IAMTANALRGERERCLEAGMDDYIAKPFKKDELKTVLER 1339
>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
Length = 806
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 31/302 (10%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+++AEA++ KSQFLA +SHE+RTPM ++G+L++L D LT+ Q + AL
Sbjct: 184 KKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKAL 242
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
+ L+N +LD +K+E+ K++LE+ FDL+ L++++ +FS + +E + +S+ +P
Sbjct: 243 ISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEI 302
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC---ENLDTSK------NTAEFPTDRK 583
+ GDPGR QI +NL+ NSIKFT GHI ++ NL T N TD K
Sbjct: 303 LLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTDEK 362
Query: 584 ---KFGRAFRTKLKQQANNAMNFREDNKLALCFE------------------VDDTGCGI 622
+ T +A ++ N E+ KL L +E V+DTG GI
Sbjct: 363 TAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGI 422
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 423 PLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTA 482
Query: 683 LL 684
+L
Sbjct: 483 VL 484
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 42/175 (24%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
S++S + +L G IL+ +D + VA L+K GA V V G A+
Sbjct: 648 SDNSGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDAL---------- 697
Query: 997 SSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYEATIEIRKSESE----------- 1044
+LLQ P +F L LMD QMP+MDG+EAT +IR E++
Sbjct: 698 -----ALLQ--------VPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDNS 744
Query: 1045 ------HGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
AR +P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 745 EIDGATRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKF 799
>gi|335034321|ref|ZP_08527672.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. ATCC 31749]
gi|333794286|gb|EGL65632.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. ATCC 31749]
Length = 1222
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 159/291 (54%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
LI+ V+ EMK+R E + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 643 LIIVTDVT-EMKVREEELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELL- 698
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ +L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E++V +
Sbjct: 699 AKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 758
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S ++E ++ + ++ V GD GR QI +N++ N++KFT +GH+++ ++
Sbjct: 759 LSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSA 818
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+ S++ V+D+G GI K ET
Sbjct: 819 EASESI-----------------------------------FSLRVEDSGIGIPVDKLET 843
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I LV G+I VV + G+ ++
Sbjct: 844 IFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEV 894
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 24/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED + QIV +IL++ G +V +G +AV+A +P+
Sbjct: 1089 LDVLVAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWEEY--------------NPA 1134
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-ARNIPIVALTAHAMNADEKKCL 1068
LILMD MP M+G++AT IR +E G +R++P++ +TAH AD ++CL
Sbjct: 1135 ---------LILMDVSMPVMNGHQATQAIRAAEQAAGDSRHVPVIGVTAHTQEADRERCL 1185
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KPI E + I
Sbjct: 1186 EAGMDDYLSKPISPESLEDKI 1206
>gi|424885547|ref|ZP_18309158.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393177309|gb|EJC77350.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 1131
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 152/284 (53%), Gaps = 38/284 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+K R E + HL +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L + L Q
Sbjct: 573 ELKSREEELRHLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTN-LDTRQ 629
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ V I KS ALL ++N ILD SK+++G+M+L FD+ + +E++ + S + N
Sbjct: 630 KTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKN 689
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E ++ + ++P V GD GR QI +NL+ N++KFT GH+ + D A
Sbjct: 690 IELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFV-------DVGFQAA-- 740
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
++ ++DT GI K E+VF+ F Q D
Sbjct: 741 --------------------------AGGEIMASIRIEDTDIGIPSEKLESVFDKFSQVD 774
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
S+TR+H GTGLGL+I LV+ GG + V + G++ + L
Sbjct: 775 ASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGKGSVFTVNL 818
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 24/142 (16%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
E + +L+AED + QIV +IL+ G + VV +G +AV A R
Sbjct: 998 EFVDVLVAEDNEVNQIVFNQILQGTGLSFLVVANGEEAVAAWERH--------------- 1042
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
TPR +I+MD MP M+G++AT IR+ E G R +PI+ +TAHA+ +D + C
Sbjct: 1043 ------TPR--IIMMDVSMPVMNGHQATQTIREREKGQGHR-VPIIGVTAHALESDRELC 1093
Query: 1068 LGVGMNAYLTKPIDSERMVSTI 1089
L GM+ Y++KPI E + I
Sbjct: 1094 LDAGMDDYMSKPISPELLEEKI 1115
>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
Length = 966
Score = 167 bits (424), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 31/302 (10%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+++AEA++ KSQFLA +SHE+RTPM ++G+L++L D LT+ Q + AL
Sbjct: 344 KKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKAL 402
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
+ L+N +LD +K+E+ K++LE+ FDL+ L++++ +FS + +E + +S+ +P
Sbjct: 403 ISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEI 462
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC---ENLDTSK------NTAEFPTDRK 583
+ GDPGR QI +NL+ NSIKFT GHI ++ NL T N TD K
Sbjct: 463 LLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTDEK 522
Query: 584 ---KFGRAFRTKLKQQANNAMNFREDNKLALCFE------------------VDDTGCGI 622
+ T +A ++ N E+ KL L +E V+DTG GI
Sbjct: 523 TAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGI 582
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 583 PLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTA 642
Query: 683 LL 684
+L
Sbjct: 643 VL 644
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 42/175 (24%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
S++S + +L G IL+ +D + VA L+K GA V V G A+
Sbjct: 808 SDNSGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDAL---------- 857
Query: 997 SSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYEATIEIRKSESE----------- 1044
+LLQ P +F L LMD QMP+MDG+EAT +IR E++
Sbjct: 858 -----ALLQ--------VPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDNS 904
Query: 1045 ------HGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
AR +P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 905 EIDGATRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKF 959
>gi|427419449|ref|ZP_18909632.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425762162|gb|EKV03015.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 923
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 152/266 (57%), Gaps = 19/266 (7%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+ ++KAE ++ KSQFLANMSHE+RTPM +IG +L + D L+ EQ V I+ SS
Sbjct: 368 EEKKKAEIASQAKSQFLANMSHEIRTPMNGVIGTTSLLLNTD-LSFEQQEYVDIIQNSSD 426
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILD SK+ESG M LE + F+L+ +E+++D+F+ + N++ + ++ ++P
Sbjct: 427 SLLGVINDILDFSKIESGYMVLEESSFELRHCIEDVLDLFASEALEKNLDLLYQIASDVP 486
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R ++GD R+ QI NL++N+IKFT G ++I L S + D K
Sbjct: 487 RCIQGDLNRLRQILMNLVSNAIKFTEKGEVLI---SVRLRQSASLNSKTIDSKTLE---- 539
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ + + L F V DTG GI +F+ F Q D STTRK+GGTGL
Sbjct: 540 -----------TIQPEFPIILEFFVKDTGIGIPIDGIPKLFKDFSQVDNSTTRKYGGTGL 588
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL+I + LV M GEI V G+
Sbjct: 589 GLAICKRLVTLMRGEIWVASDVGQGS 614
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 26/136 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED P+ Q+V +IL K+ + + +GL+ +EAL R P
Sbjct: 804 LRILVAEDNPVNQMVVLRILAKLDYSGDLAANGLEVLEALER---------------QP- 847
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+I MD QMP++DG EAT +I + E + I+A TA+ D+ C
Sbjct: 848 -------YDIIFMDLQMPEIDGLEATEQIIEKWGEDRPK---IIAATANVQQEDQAACFA 897
Query: 1070 VGMNAYLTKPIDSERM 1085
GM+ Y++KP E++
Sbjct: 898 AGMDDYISKPYALEQI 913
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q +L+ R+L+ +D+ +C +L + + + PD + +A A +R
Sbjct: 636 QVSVLQACRVLIVDDSH----ASCTVLAEQCSQWGLKPDTAPSAQA------ALGGLKRG 685
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
+FDL ++D QMP MDG E +IR + + ++P + L A +
Sbjct: 686 ------------QQFDLAIIDVQMPGMDGLELVQQIRSLQLDF---SLPCIMLGAVSKPH 730
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D+++ +A+LTKPI + I L K
Sbjct: 731 DKEELF----DAWLTKPIKYANLWKAITDLVK 758
>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 1493
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 152/258 (58%), Gaps = 22/258 (8%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE ++ KS+FLA MSHE+RTPM A+IG+ +L D +LT EQ V I+ S
Sbjct: 720 EAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPEQRDFVETIRTSGD 778
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK+ELE F L+ LEE +++ S + + +E + + P
Sbjct: 779 ALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTP 838
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + GD R+ Q+ NL++N+IKFTS G +I+ + D K D KK
Sbjct: 839 KTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK-------DVKK------ 885
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ +F E + + L FEV DTG GI + + +F++F Q D STTR++GGTGL
Sbjct: 886 -------SDDSDFTESHYV-LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGL 937
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L M G++ V
Sbjct: 938 GLAISQRLSQLMNGKMWV 955
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED Q VA K+L+++G + +GL+ ++ALNR
Sbjct: 1179 LRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQ----------------- 1221
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEI---RKSESEHGARNIPIVALTAHAMNADEKK 1066
++D+ILMD QMP+MDG EA+ I S+ G R I+A+TA+AM D +
Sbjct: 1222 ------QYDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREM 1275
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ Y+TKP+ E + + +
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid
[Agrobacterium fabrum str. C58]
gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid
[Agrobacterium fabrum str. C58]
Length = 1231
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 159/291 (54%), Gaps = 39/291 (13%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
LI+ V+ EMK+R E + L +R AEA++ KS+FLANMSHE+RTPM ++G+ E+L
Sbjct: 652 LIIVTDVT-EMKVREEELQRLLSR--AEAADRAKSEFLANMSHEIRTPMNGVLGMAELL- 707
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+ +L Q + I KS ALL ++N ILD SK+E+G+M+L + FD + +E++V +
Sbjct: 708 AKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSL 767
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
S ++E ++ + ++ V GD GR QI +N++ N++KFT +GH+++ ++
Sbjct: 768 LSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSA 827
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+ S++ V+D+G GI K ET
Sbjct: 828 EASESI-----------------------------------FSLRVEDSGIGIPVDKLET 852
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q D S TR+H GTGLGL+I LV G+I VV + G+ ++
Sbjct: 853 IFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEV 903
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 24/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED + QIV +IL++ G +V +G +AV+A + +P+
Sbjct: 1098 LDVLVAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWE--------------EYNPA 1143
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-ARNIPIVALTAHAMNADEKKCL 1068
LILMD MP M+G++AT IR +E G +R++P++ +TAH AD ++CL
Sbjct: 1144 ---------LILMDVSMPVMNGHQATQAIRAAEQAAGDSRHVPVIGVTAHTQEADRERCL 1194
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KPI E + I
Sbjct: 1195 EAGMDDYLSKPISPESLEDKI 1215
>gi|384920925|ref|ZP_10020922.1| histidine kinase [Citreicella sp. 357]
gi|384465264|gb|EIE49812.1| histidine kinase [Citreicella sp. 357]
Length = 902
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 141/257 (54%), Gaps = 40/257 (15%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AEA++ KS FLANMSHE+RTPM ++G+ ++L+ D L++EQ V I+ S A
Sbjct: 322 AKLRAEAASRAKSAFLANMSHEIRTPMNGVVGMADLLRDSD-LSDEQKLYVDTIRSSGEA 380
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+ K+ L+ FDL++ + ++V + VE ++D +P
Sbjct: 381 LLVIINDILDYSKIEAEKLTLKPELFDLERTVHDIVLLLQPAAREKGVELLVDYDMFLPT 440
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR--GWCENLDTSKNTAEFPTDRKKFGRAF 589
+V GDPGR+ QI +NLI N++KFT+ GH+++R G E+ D
Sbjct: 441 SVMGDPGRIRQILTNLIGNAVKFTADGHVMVRLTGLIEDSD------------------- 481
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ + V+DTG GI K + VF F Q D R+ GTG
Sbjct: 482 ------------------RACIHITVEDTGIGIAADKIDHVFGEFNQADDDCNRQFEGTG 523
Query: 650 LGLSIVRTLVNKMGGEI 666
LGL+I + LV MGGE+
Sbjct: 524 LGLAITKRLVEMMGGEV 540
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 901 SICPGESSSRREDLIHTMFRERHQIG--SSRRDQPCSSSNSSSNQKRILEGLRILLAEDT 958
+ P S L FR R +S R P S+ ++ + L ILLAED
Sbjct: 711 GVAPDAESGTDAPLAFPAFRHRDMTSGFASVRSAPPSAPETTPARP-----LDILLAEDN 765
Query: 959 PLIQIVACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPR 1016
Q+V K+++K+ V + +G++A+EA R
Sbjct: 766 RTNQLVFRKMIQKLDVLVKLRFAANGIEALEAYKER-----------------------R 802
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
D++ MD MPKMDG AT EIRK ES G +PI+A+TAHAM D L G++ YL
Sbjct: 803 PDIVFMDISMPKMDGKAATHEIRKIESA-GGPCVPIIAVTAHAMAGDRDGILEAGLDDYL 861
Query: 1077 TKPI 1080
TKP+
Sbjct: 862 TKPL 865
>gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 1226
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 175/346 (50%), Gaps = 50/346 (14%)
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+ +L +++ + AEL+ A+ +AE S K QFLANMSHE+RTPM +IG++++
Sbjct: 683 VVAVLARDITELKRQSAELVK---AKNEAERSLKVKEQFLANMSHEIRTPMNGVIGMIDL 739
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L +D +L EQ S V +K+SS LL +LN ILDLSK+E+GKM L ++ E+L+
Sbjct: 740 L-NDTKLDEEQRSYVKTVKRSSETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLI 798
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
+F Q ++ N E L ++P V D R+ Q+ SNL +N+IKFT +G I +
Sbjct: 799 ALFGQQANSKNNELTYHLGSDLPTFVIADQTRLLQVLSNLTSNAIKFTENGTIRVE---- 854
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
A + R KF R + EV D+G GI Q
Sbjct: 855 --------ASLISKRGKFNR-----------------------IRIEVKDSGIGISQQNI 883
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
+F SF Q D S+ + GGTGLGL+I + L + M GEI V G+ + L +
Sbjct: 884 NLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDSTVGMGSTFWFTIELKET 943
Query: 688 S--------ESKQIYDADFPNTV---VVLATVGSMERMIISQWLRK 722
S E +I A+F +T V+L ++ R + S+ LRK
Sbjct: 944 SISPTQQTTEVAEIALANFFSTYHPNVLLVDDNAVNRKVASEILRK 989
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 20/142 (14%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LL +D + + VA +IL K G V+ G A+ + + + T
Sbjct: 970 VLLVDDNAVNRKVASEILRKAGCVVTTADSGPAAISEVEKRV-----------------T 1012
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
P FD+I MD QMP MDG E T +RK + G + IVA+TA++M D ++ + G
Sbjct: 1013 DAQPGFDVIFMDIQMPDMDGVETTRNLRK---QFGNKLPTIVAMTAYSMREDRERFISQG 1069
Query: 1072 MNAYLTKPIDSERMVSTILRLT 1093
++ Y+ KPI ++ +++ + LT
Sbjct: 1070 LDDYIAKPIRAQSLIAKVKELT 1091
>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 1364
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 168/322 (52%), Gaps = 51/322 (15%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + + + L +E +LR + DA A+++N KS FLANMSHE+RTPM AI
Sbjct: 610 VIGYLGVAVDLIEQKLQEKQLRLAM----DA---AKSANQSKSDFLANMSHEIRTPMNAI 662
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+L +L+ +L V +I +S+ LL ++N ILD SK+E+G+++LE FDL +
Sbjct: 663 LGMLYLLQRS-ELPGAAQDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQ 721
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR---GDPGRVFQIFSNLINNSIKFTSSG 558
+ + ++ S VE ++ + +PR+ R GD R+ Q+ NL+ N+IKFT G
Sbjct: 722 LFDNIAELMRSSLSAKPVEMIV---EPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG 778
Query: 559 HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
+++ + FP+ + NK L F V DT
Sbjct: 779 EVVL-----------SVRRFPSG-----------------------DPNKFKLLFSVRDT 804
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
G GI + K +F F Q D ST+R++GG+GLGL+I R L+ MGGE++V ++ PG
Sbjct: 805 GIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEV--ESVPGRGS 862
Query: 679 QLYLLLGASSESKQIYDADFPN 700
+ Y ++ + D P+
Sbjct: 863 EFYFVITLEKSAPPQEQRDLPS 884
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 29/181 (16%)
Query: 923 HQIGSSRRDQ-PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H++ DQ P + + + + R LEG+ +LL +D+ + VA +ILE GA V+V D
Sbjct: 1004 HRLFEQLMDQRPGTRAATPTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHD 1063
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G QAV L R TP+ F L+LMD QMP +DGYEAT +R+
Sbjct: 1064 GEQAVSTLKR-------------------TPNL--FHLVLMDVQMPVVDGYEATRRLRQI 1102
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL----TKNMP 1097
+ ++P++ALTA A ++K L GMN ++ KP + E +V+ I T+ +P
Sbjct: 1103 PA---LASLPVIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAIRHFLQPGTRRIP 1159
Query: 1098 S 1098
S
Sbjct: 1160 S 1160
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 203/414 (49%), Gaps = 58/414 (14%)
Query: 294 VDSDNPVIQMGAQWLQSEYGS----KVPPGHVIHVQ-----NAKLGHKQYYMDTFF---- 340
V S P I A++L+ Y S K+P + H+Q + + Y D
Sbjct: 1104 VASPAPQIPFVAEYLEPGYSSILTVKIPVANNPHIQQVLAADRAIASNNVYDDPLLQNAT 1163
Query: 341 -----LNLKRLPIV---------GVIIIPR--EYIMGKADERAYKTLIILISASVCILVI 384
+NLK + +V GVI + + ++ DE I L+ A + I
Sbjct: 1164 GMCDQVNLKSMLVVRTSYKEKPNGVICLHQCDQFRQWSNDE------IELLEAVADQVGI 1217
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
+L + +L + ++ A++ AEA+N KS FLA MSHE+RTPM A+IG+
Sbjct: 1218 ALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGM 1277
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
+L D QL++EQ I+ S ALL ++N ILD SK+ESGK+ELE F+L+ +E
Sbjct: 1278 TGLLL-DTQLSHEQAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIE 1336
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E +D+ + + + +E + P +RGD R+ QI NL++N++KFT G + +
Sbjct: 1337 ESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALKFTHQGEVTVSV 1396
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
+SK + P ++ + RT +QQ + F V DTG GI
Sbjct: 1397 ------SSKRVS--PQSLEQL--SHRTNKEQQYE------------ILFAVKDTGIGIPP 1434
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
+ + +F++F Q D ST+R +GGTGLGL I + L MGG I V + G++
Sbjct: 1435 DRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIF 1488
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 27/141 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q V IL ++G V +GL+ +EAL+R
Sbjct: 1660 LRILLAEDNVVNQQVGLHILGRMGYRADVAANGLEVLEALHRQ----------------- 1702
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMP+MDG +AT I + E A N P I+A+TA+AM D + CL
Sbjct: 1703 ------SYDVVLMDVQMPEMDGLKATQRICQ---EWSAENRPHIIAMTANAMRGDRETCL 1753
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ Y++KPI E +V ++
Sbjct: 1754 QAGMDDYISKPIRVEELVRSL 1774
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL ++D MP MDG +IR+ + + IP+V LT+ + + A+L
Sbjct: 1560 FDLAILDMHMPGMDGVNLASQIRR---QPDGQEIPLVMLTSIGKPENSGQLDEAKFAAFL 1616
Query: 1077 TKPIDSERMVSTILRLTKNMPSEATGT 1103
TKPI ++ + ++ + P + T
Sbjct: 1617 TKPIKQSQLYNVLMDVLVGQPVKVRST 1643
>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
Length = 996
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 160/304 (52%), Gaps = 35/304 (11%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+++AEA++ KSQFLA +SHE+RTPM ++G+L++L D LT+ Q + AL
Sbjct: 374 KKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-DTDLTSTQRDFAQTAQVCGKAL 432
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
+ L+N +LD +K+E+ K++LE+ FDL+ L++++ +FS + +E + +S+ +P
Sbjct: 433 ISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEI 492
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ GDPGR QI +NL+ NSIKFT GHI ++ D S E + G T
Sbjct: 493 LLGDPGRFRQIITNLVGNSIKFTERGHIFVQ--VHLADHSNLATESKVEPVANGMNGHTN 550
Query: 593 LKQ--------------QANNAMNFREDNKLALCFE------------------VDDTGC 620
K +A ++ N E+ KL L +E V+DTG
Sbjct: 551 EKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKSEMPYESVSDKVTLVVSVEDTGI 610
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GI VF F Q D ST+R +GGTG+GLSI + LV MGG+I V + G+
Sbjct: 611 GIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 670
Query: 681 YLLL 684
+L
Sbjct: 671 TAVL 674
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 42/175 (24%)
Query: 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAE 996
S++S + +L G IL+ +D + VA L+K GA V V G A+ L+
Sbjct: 838 SDNSGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLH------ 891
Query: 997 SSRRRSLLQGSPSETPDTP-RFDLILMDCQMPKMDGYEATIEIRKSESE----------- 1044
P +F L LMD QMP+MDG+EAT +IR E++
Sbjct: 892 -----------------VPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDDS 934
Query: 1045 ------HGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
AR +P++A+TA + A ++C GM+ Y+TKP + +++ + +
Sbjct: 935 EIDGTTRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKF 989
>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
Length = 1314
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 36/246 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTP+ +IG+LE+L + L Q V + S+ LL L+N +LD
Sbjct: 600 KSAFLANMSHEIRTPLNGVIGMLELLGTT-TLDERQNRYVHIARSSAGTLLGLINDVLDF 658
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+GK+ELE +FDL LE++ +MFS + + +E + +P NV GDP R+ Q
Sbjct: 659 SKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPERIRQ 718
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ NL+NN+IKFT G +I+R +QQ +++
Sbjct: 719 VLINLVNNAIKFTKQGEVILRA-----------------------------EQQVHSSGV 749
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
R + V DTG GI + +F F Q D STTRK+GGTGLGL+I R L+ M
Sbjct: 750 SR------MRISVIDTGIGIPADRSSQLFAPFTQVDASTTRKYGGTGLGLAICRQLIELM 803
Query: 663 GGEIKV 668
GG + V
Sbjct: 804 GGRVGV 809
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 30/166 (18%)
Query: 933 PCSSSNSSSNQKRILE--GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
P S + + IL GL++L+AED + Q+V +IL G VV +G QA++AL
Sbjct: 1004 PAYSRTEGATPQEILAQCGLKLLVAEDNEINQMVTSEILRGSGYACDVVSNGNQAIDALV 1063
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE----HG 1046
R + L+LMDCQMP++DG+ AT +IR E H
Sbjct: 1064 R-----------------------GGYALVLMDCQMPELDGFAATKKIRALEQSGSLTHA 1100
Query: 1047 ARN-IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ +P+VALTA+A+ D CL GMN Y TKP+D ++ TI R
Sbjct: 1101 VQGPMPVVALTANAVYGDRDVCLAAGMNDYTTKPVDRAILLGTIAR 1146
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GL +L +DT + L G V+ DGLQA+ L R ++ G
Sbjct: 842 LRGLAVLTVDDTDTNLEILHDQLTSWGMRVTAARDGLQALAQL----------RTAVRSG 891
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++ L+++D QMP+MDG + I+ + R+ ++ LT+ D K
Sbjct: 892 K--------KYPLVILDHQMPEMDGLQLAAAIK---GDALLRDTNLLMLTSVDQLVDRSK 940
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
+G+ +TKPI R+ I + K+ S
Sbjct: 941 WSSLGLAGVMTKPIRQSRLFDAIAGVLKHQES 972
>gi|440683654|ref|YP_007158449.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428680773|gb|AFZ59539.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1342
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 162/323 (50%), Gaps = 35/323 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+R+AE++N KSQFLA MSHE+RTPM A+IG+ +L D L ++Q + I+ S A
Sbjct: 657 AKRQAESANRAKSQFLAMMSHEIRTPMNAVIGMTGLLL-DTNLDSQQQDLITTIRSSGDA 715
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ES ++ LE F L+ LEE +D+ + Q + +E + L+ P
Sbjct: 716 LLSIINDILDFSKIESNQLNLEAQPFSLRNCLEESLDLLASQAATKKIELIYLLTPQTPN 775
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QIF NL++N++KFT+ G +I+ + L FP +F
Sbjct: 776 TIIGDITRLRQIFVNLLSNAVKFTNIGEVIVTATAKALAIVTTAPTFPLYEIEFA----- 830
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ DTG GI K + +F+ F Q D S TRK+GGTGLG
Sbjct: 831 -----------------------IKDTGIGIPPEKIDRLFQPFSQVDSSMTRKYGGTGLG 867
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L I + L MGG + V + G+ + + A ++ I N + S
Sbjct: 868 LVISQRLSEMMGGRMWVESQIDNGSTFYFTITVPADPLTESINLNKSSN------QLNSK 921
Query: 712 ERMIISQWLRKKKVSTLETSEWH 734
+I+S + ++ T++ W
Sbjct: 922 RLLILSNHVAHRQFLTMQAESWE 944
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 31/165 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGL-----RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
R QP S+S SN + L RIL+AED P+ + IL K+G V +GL+
Sbjct: 1040 RQQPIRFSSSDSNVGQTYPDLSDLAMRILVAEDHPVNLKMIILILSKLGLRADVAGNGLE 1099
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
+ AL R +D+ILMD QMP+MDG E T +IR E
Sbjct: 1100 VLSALQRQ-----------------------SYDVILMDVQMPQMDGLETTQQIRMWHWE 1136
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
R I+A+TA+AM D++ CL GM+ Y++KPI E +V +
Sbjct: 1137 EQPR---IIAMTANAMQGDKEVCLEAGMDEYISKPIRLEDLVRVL 1178
>gi|400288800|ref|ZP_10790832.1| GAF sensor hybrid histidine kinase [Psychrobacter sp. PAMC 21119]
Length = 609
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 161/303 (53%), Gaps = 24/303 (7%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+ A+ + D +R A+ +N KS FLANMSHE+RTPM IIG++E+L S+ +L+ EQ
Sbjct: 169 MAADALQLQDKQRVAKHANEMKSDFLANMSHEIRTPMNGIIGMVEML-SETKLSQEQQEY 227
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
V IK S+ LL ++N ILDLSKVESGKM ++ +L E+V +F+++ +
Sbjct: 228 VDNIKVSNEHLLAIINGILDLSKVESGKMTIDAIPMNLSTLCNEVVSLFAIKARQRGLIL 287
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHII------IRGWCENLDTSKN- 574
+++ V+GDP R+ QI NL+NN+IKFT G + + C D SKN
Sbjct: 288 DYHYMESLSPYVQGDPVRLKQIMVNLVNNAIKFTREGGRVSIDVKHVPNCCYINDKSKND 347
Query: 575 ------TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ TD G + + Q N + L EV DTG GI +
Sbjct: 348 KSRNDESDNALTDETISGDSIIEESTSQEN----------MTLYIEVTDTGVGIKPESVD 397
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
+F+++ Q D ST R +GGTGLGLS+ ++LV+ MGG I V GT + L L
Sbjct: 398 AIFDAYNQADKSTHRLYGGTGLGLSVCKSLVDLMGGCINVDSVVGVGTTFTVLLPLPTIG 457
Query: 689 ESK 691
E +
Sbjct: 458 EEQ 460
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
ILL ED + +A K L G TV+ V DG QA+E L E
Sbjct: 482 HILLVEDDSVNATIAKKALNNSGHTVTHVTDGQQAIETF--ALYPE-------------- 525
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
R+DLILMD MP MDG +ATI++ + PI+ALTA+AM+ + +K L V
Sbjct: 526 -----RYDLILMDHHMPIMDGVQATIKLHELYDPQVLP--PIIALTANAMDGEREKYLNV 578
Query: 1071 GMNAYLTKPIDSERM 1085
GM Y TKP E++
Sbjct: 579 GMQDYCTKPFKQEQL 593
>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 987
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 177/342 (51%), Gaps = 43/342 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I ++ + VI + IL + +K+ + + + + +AEA++ KSQFLA +SH
Sbjct: 332 IALTTAFLFFVILFLVGYILYGAGNHIVKVEDDFHAMEELKVRAEAADIAKSQFLATVSH 391
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM I+G+L +L D +L++ Q + AL+ L+N +LD +K+E+GK+EL
Sbjct: 392 EIRTPMNGILGMLALL-LDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLEL 450
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
E FDL+ +++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+
Sbjct: 451 EAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSV 510
Query: 553 KFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA-----------FRT----KLKQQA 597
KFT GHI ++ D K+ D G + F+T + +
Sbjct: 511 KFTEQGHIFVK--VHLADNRKSIMNGKHDTFLNGESDEVFHISGDYHFKTLSGCEAADER 568
Query: 598 NNAMNFR-----------------------EDNKLALCFEVDDTGCGIDQSKWETVFESF 634
N+ NF+ E L +C V+DTG GI S + +F F
Sbjct: 569 NSWDNFKHLIADEEYGLDSSRETMAACESSEQVTLRVC--VEDTGIGIPFSAQDGIFMPF 626
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D ST+R +GGTG+GLSI + LV MGG+I + + G+
Sbjct: 627 VQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGS 668
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 28/156 (17%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L G +IL+ +D + + VA L+K GA V G A+E L
Sbjct: 848 LLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKVALEML---------------- 891
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE-----HGAR-NIPIVALTAHA 1059
+ P FD MD QMP+MDG+EAT IR ES+ +G+ ++PI+A+TA
Sbjct: 892 ----QLPHN--FDACFMDIQMPEMDGFEATSRIRMMESKANEEMNGSEWHVPILAMTADV 945
Query: 1060 MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
+ A KC+ GM+ Y++KP + E + + + K+
Sbjct: 946 ILATYDKCVKCGMDGYVSKPFEEENLYQEVAKFFKS 981
>gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1162
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 20/322 (6%)
Query: 376 SASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELR 435
SA + L G ++ + V+ + A L+ A AEA+N KS+FLANMSHE+R
Sbjct: 635 SAPLGSLPDGRRAVIRMAVDVTGRKEAEAALLREKGA---AEAANLAKSEFLANMSHEIR 691
Query: 436 TPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 495
TP+ +G+L++L++ L EQ + S+ L +LL+ +LDLS+VE+G++ L
Sbjct: 692 TPLNGSLGMLQLLQTT-TLDEEQQDYLTSAITSARRLTQLLSDVLDLSRVEAGRLALRAA 750
Query: 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT 555
F L+ + D+F + +E + L +P + GD R+ QI NL+ N+IKFT
Sbjct: 751 PFALEGVAGSIRDIFLLPAREKELELDIRLDPRLPARLVGDEARLRQIAFNLVGNAIKFT 810
Query: 556 SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEV 615
+G + + P + G A A N R +L L EV
Sbjct: 811 DTGSVTV---------ELTPLGLPPAARPAGNAAGDATSGPAGNTPAHRP-AQLRLLLEV 860
Query: 616 DDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
DTG GI +S E +FE F Q D S R+HGG GLGLSIVR LV MGGE+ + +++PG
Sbjct: 861 RDTGIGIPESHLERIFEPFSQLDGSHVRRHGGAGLGLSIVRRLVALMGGELSL--ESTPG 918
Query: 676 TLMQLYLLLGASSESKQIYDAD 697
T +++ L + ++DAD
Sbjct: 919 TGTNIFISLPFGA----LWDAD 936
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 23/143 (16%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL +LL ED + Q+ ++LEK G TV++V DG QA++AL+
Sbjct: 1033 GLHVLLVEDDAVNQLAVRRMLEKSGMTVTLVTDGQQALDALHHAA--------------- 1077
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FD ++MD QMP MDG AT IR + IP+VA+TAHAM D + +
Sbjct: 1078 --------FDCVVMDVQMPVMDGLTATRAIRTDPAFASRAAIPVVAMTAHAMVGDRESFM 1129
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ Y++KP++ + ILR
Sbjct: 1130 EAGMDDYVSKPVEMSGLRQAILR 1152
>gi|453085745|gb|EMF13788.1| hypothetical protein SEPMUDRAFT_84970 [Mycosphaerella populorum
SO2202]
Length = 1488
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 157/298 (52%), Gaps = 45/298 (15%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD-----QLTNEQYSTVCQIKKSSY 470
A+ ++ KSQFLANMSHE+RTP+A +IG+ E+L +D +LT EQ I++S+
Sbjct: 844 AKEASKMKSQFLANMSHEIRTPIAGVIGMSELLLDEDDSASGKLTKEQRECAENIQRSAN 903
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SKVESG++++E +FDL + ++ M S ++ + D+
Sbjct: 904 GLLTVINDILDFSKVESGRLDIEEVQFDLSVVISDVNKMLSFAAERKGLKYIDDIQQLSS 963
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GDPGR+ Q+ +NL+ NSIKFTS G + +R
Sbjct: 964 WKVMGDPGRLRQVMTNLLTNSIKFTSDGSVTMR--------------------------- 996
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
K +++ N+ + + F V+DTG GI++ + +F+ F Q D ST R+ GGTGL
Sbjct: 997 VKAQRETNDTVE--------VHFTVEDTGIGIEEEVRQRLFKPFSQADSSTARRFGGTGL 1048
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATV 708
GL+I + LV M GEI + K GT ++ +K Y + +V L T+
Sbjct: 1049 GLTISKNLVELMRGEIFLESKLGVGTRATFWIPF-----NKAPYQTSADSPLVDLGTI 1101
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 21/133 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED P+ Q +A K ++K+G V V +G +A+E L+ SPS
Sbjct: 1165 QVLVVEDNPVNQQIALKTIKKLGFPVRAVWNGQEALEYLS----------------SPS- 1207
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSES---EHGARNIPIVALTAHAMNADEKKC 1067
P+ PR +ILMD QMP MDGY AT IR ++ ++ PI+A+TA A+ D +KC
Sbjct: 1208 -PERPRPQVILMDVQMPIMDGYRATWTIRNDKAFVQNADVQSAPIIAMTASAIQGDREKC 1266
Query: 1068 LGVGMNAYLTKPI 1080
GM+ YL KP+
Sbjct: 1267 QAAGMDDYLAKPV 1279
>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1493
Score = 167 bits (422), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 151/258 (58%), Gaps = 22/258 (8%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE ++ KS+FLA MSHE+RTPM A+IG+ +L D +LT EQ V I+ S
Sbjct: 720 EAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPEQRDFVETIRTSGD 778
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK+ELE F L+ LEE +++ S + +E + + P
Sbjct: 779 ALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTP 838
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + GD R+ Q+ NL++N+IKFTS G +I+ + D K D KK
Sbjct: 839 KTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK-------DVKK------ 885
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ +F E + + L FEV DTG GI + + +F++F Q D STTR++GGTGL
Sbjct: 886 -------SDDSDFTESHYV-LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGL 937
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L M G++ V
Sbjct: 938 GLAISQRLSQLMNGKMWV 955
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED Q VA K+L+++G + +GL+ ++ALNR
Sbjct: 1179 LRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQ----------------- 1221
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEI---RKSESEHGARNIPIVALTAHAMNADEKK 1066
++D+ILMD QMP+MDG EA+ I S+ G R I+A+TA+AM D +
Sbjct: 1222 ------QYDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREM 1275
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ Y+TKP+ E + + +
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
>gi|426404768|ref|YP_007023739.1| sensor histidine kinase/response regulator [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425861436|gb|AFY02472.1| sensor histidine kinase/response regulator [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 879
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 39/303 (12%)
Query: 367 AYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHL-DARRKAEASNNYKSQ 425
A+ + L+++ + + +I C +L + N + ++ E HL D + + ++ KS+
Sbjct: 441 AFNAAVFLLTSLIFVFLI-CALLLTIANRIITVEEIVDEKTQHLIDLNVQLKKASETKSE 499
Query: 426 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKV 485
FLANMSHE+RTP+ I+G+ ++L+ + L ++Q V KK+ + LL ++N ILD+SK+
Sbjct: 500 FLANMSHEIRTPLNVIVGMSDLLE-ESPLNDDQKHYVEISKKAGHNLLSIINDILDISKI 558
Query: 486 ESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFS 545
E+G + LE TE DL + ++ +MF ++ N+E + LS++ GDP R+ Q+ S
Sbjct: 559 EAGLVTLEKTEVDLHSLVADITEMFELKAREKNLELTVYLSEDTHSIFMGDPTRIRQVLS 618
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRE 605
NLI+NS+KFT+ G I ++ KN E +
Sbjct: 619 NLISNSLKFTTDGSI-------RVELMKNQTELDGN------------------------ 647
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
L F V DTG GI + K +F+ F Q D + TRK GGTGLGLSI + LV M G+
Sbjct: 648 -----LIFHVSDTGIGIPRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGD 702
Query: 666 IKV 668
I +
Sbjct: 703 ITI 705
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
S +S+ LE L IL+ +DT +++ L+ ++ +G QA+E +
Sbjct: 738 SGPASTGTPTTLEPLSILIVDDTDDNRLLIKAYLKNTPHQITEASNGRQALELAQKQ--- 794
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
RFDLILMD QMP MDG+ AT +IRK E EH I AL
Sbjct: 795 --------------------RFDLILMDMQMPVMDGFTATQKIRKWEQEHKQPPTTIWAL 834
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
TA A+ + + L VG N +L KP+ +++ I +L++
Sbjct: 835 TAFALKNEIDRSLSVGCNLHLIKPLRKADLLNHIQKLSE 873
>gi|442319645|ref|YP_007359666.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
gi|441487287|gb|AGC43982.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
Length = 925
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 36/280 (12%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLA MSHE+RTPM AIIG+ ++ + L+ EQ + I++SS ALL LLN +LD
Sbjct: 256 KSLFLATMSHEIRTPMNAIIGMTGLML-ETHLSEEQREFISTIRQSSEALLTLLNDVLDF 314
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G++E + FDL++ +E ++D+ +V+ S ++ D+S +P+ V GD R+ Q
Sbjct: 315 SKIEAGRLEADLHPFDLRQCVESVLDLLAVRASEKGLDLGADISPQVPQVVMGDASRLRQ 374
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ NL+ N++KFT SG ++ D + G A
Sbjct: 375 VLLNLVGNALKFTESGGAVVS----------------VDGTRRGDA-------------- 404
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
D L F V DTG GI +K + +F+ F Q D + TRK GGTGLGL+I + LV M
Sbjct: 405 --PDAPWVLSFAVQDTGPGIPVTKQQGLFQPFNQLDVAVTRKFGGTGLGLAISKRLVEAM 462
Query: 663 GGEIKVVKKNSP--GTLMQLYLLLGASSESKQIY-DADFP 699
GG I V + P GT L L A+ ++ Y AD P
Sbjct: 463 GGRIWVESEGVPGRGTTFFFSLTLQAAPQTTAGYLRADQP 502
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 27/149 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILL ED P Q +A +L+++G V +G +A+E R
Sbjct: 651 LRILLVEDNPTNQRLASLLLDRLGYQVQAASNGREALEWSMRQ----------------- 693
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
RFD++LMD QMP+MDG EAT +R+ E + P +VA+TA+AM++D ++C
Sbjct: 694 ------RFDVVLMDLQMPEMDGLEATRRLRR---ELPPKVQPWVVAMTANAMDSDREQCF 744
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ +L KPI E + + ++R P
Sbjct: 745 EAGMDDFLAKPIRVEALTAALVRCQTPRP 773
Score = 39.7 bits (91), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 40/165 (24%)
Query: 926 GSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQA 985
G R DQP L+G R+L+ +D + + + + L+ GA G++A
Sbjct: 495 GYLRADQPA------------LQGRRVLIVDDNAINRRLLGRQLQTWGAEPVEAGSGMEA 542
Query: 986 VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH 1045
+ L RFDL+L+D QMP +DG I++ E
Sbjct: 543 LAKLQ----------------------PGARFDLVLIDQQMPGLDGPSLASRIKERED-- 578
Query: 1046 GARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090
+ IP++ LT+ A L +A L++P+ + + T++
Sbjct: 579 -LQKIPLLLLTSTGRRAVPPPGL---FSAVLSRPMKASHLHDTLV 619
>gi|238920900|ref|YP_002934415.1| signal transduction histidine-protein kinase BarA, putative
[Edwardsiella ictaluri 93-146]
gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA, putative
[Edwardsiella ictaluri 93-146]
Length = 918
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 153/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG +++K+ L+ Q + I++S+
Sbjct: 277 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKT--PLSATQIDYLHTIERSAN 334
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N +LD SK+E+GK+ LE+ F L++ ++E+ + + + +E L++ +++P
Sbjct: 335 NLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVP 394
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+V GDP R+ Q+ +NL+ N+IKFT G+I IR
Sbjct: 395 EHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIR--------------------------- 427
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q + A+ L +V DTG GI + + +F++F Q D S TR+HGGTGL
Sbjct: 428 IELRSQTSQAVE--------LEIQVHDTGIGISERQQSQLFQAFRQADASITRRHGGTGL 479
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + L+N+MGG+I + G+
Sbjct: 480 GLVITQKLINEMGGDIAFHSQPHKGS 505
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
D+ILMD QMP+MDG T E+ + +S H PI+A+TAHA+N + ++ L GM+ YL
Sbjct: 708 LDIILMDIQMPEMDGIRTT-ELLRQQSRHV--TTPIIAVTAHAINGERERLLRAGMDDYL 764
Query: 1077 TKPIDSERMVSTILRLTKNMPSEA 1100
KPID + + R + PS A
Sbjct: 765 AKPIDENMLRQLLNRYSGERPSTA 788
>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
Length = 926
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 174/333 (52%), Gaps = 57/333 (17%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSYA 471
++KA+ + KS+FLANMSHELRTP+ +IG ++LK+ QLT Q + I++S+
Sbjct: 281 KKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKT--QLTTNQIDYLQTIERSAGN 338
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL+++N ILD SK+E+GK LE+ FDL+ ++E + + + N+E L + +P
Sbjct: 339 LLKIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLIVDPEVPY 398
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ QI +NLI N+IKFT G I I+
Sbjct: 399 EVFGDAMRLQQILTNLIGNAIKFTEKGDIKIQ--------------------------IQ 432
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
++++Q N DNK+ L + D+G GI + + +F++F Q D S TR++GGTGLG
Sbjct: 433 RIEEQTN------RDNKVTLKIMISDSGIGISKKQQAQLFKAFGQADTSITRQYGGTGLG 486
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSM 711
L I + LV +M G I+++ G+ F T+V+ + +
Sbjct: 487 LVITQKLVKEMQGRIELISIPEQGS--------------------TFGFTIVIEKSARAA 526
Query: 712 ERMIISQWLRKKKVSTLETSEWHGL--TQILRE 742
I L+K+KV ET+E+ L TQ+LR+
Sbjct: 527 LSNIALSRLQKQKVLVFETNEYAALACTQLLRQ 559
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 965 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS-ETPDTPRFDLILMD 1023
A I + V V D ++ ++ MLA ++ + + G + E FDLI MD
Sbjct: 663 ALPIFMRKDINVMAVDDNPANLKLISVMLADRTNHVTTCINGQQAVEQAKNHHFDLIFMD 722
Query: 1024 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
QMP +DG A ++I+K + + P++A+TAH ++ ++++ L +GM+ L KPID
Sbjct: 723 IQMPVLDGINACLQIKKGKINYKT---PVIAVTAHVLSGEKEQFLQLGMDDCLAKPIDEI 779
Query: 1084 RMVSTILRLTKN 1095
+ I + T N
Sbjct: 780 ALQKMINKWTPN 791
>gi|431795166|ref|YP_007222071.1| PAS/PAC sensor hybrid histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785392|gb|AGA70675.1| PAS/PAC sensor hybrid histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 781
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI--LKSDDQLTNEQYSTVCQIKKSS 469
A+ KAEA+N KS+FLANMSHE+RTP+ IIG++++ L + D+ E V K S+
Sbjct: 273 AKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTALDESQRENLRVV---KSSA 329
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
Y+L +++N ILD SK+E+GK+ ++ F+L+K +E+ + + + ++ L NI
Sbjct: 330 YSLFKIINDILDFSKIEAGKLAIDEMCFNLKKVIEDTIKTHAPEAERRGLDLNTILPANI 389
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P N+ GDPGR+ Q+ +NL+NN+IKFT G + + C + + K+ EF
Sbjct: 390 PNNLIGDPGRIKQVLNNLLNNAIKFTEQGEVSLSLKC--IQSDKDFWEFK---------- 437
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
F + DTG GI ++ +F+ F Q D S TRK+GGTG
Sbjct: 438 -----------------------FTIMDTGIGISKADQAKLFKQFNQVDGSITRKYGGTG 474
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I + LV MGG I + + G+
Sbjct: 475 LGLAISKKLVEMMGGRIWLESQKGKGS 501
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 27/158 (17%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P + + ++R L RILLAED + +V ++L+K G V V DG A+
Sbjct: 519 PTLEQTNENLKERDLGPYRILLAEDHLVNSLVITEMLKKHGHDVDVAMDGEAAL------ 572
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IP 1051
+L Q +P +D+IL+D Q+PK+DG E T IR E GA+N P
Sbjct: 573 ---------ALYQRNP--------YDVILLDIQLPKLDGMEVTKRIRHME---GAKNHTP 612
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I+ALTA+A+ AD ++ L GM+ Y+ KP+ E +V T+
Sbjct: 613 IIALTAYALKADRERFLSSGMDEYIPKPVMMEELVMTL 650
>gi|428298374|ref|YP_007136680.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428234918|gb|AFZ00708.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 837
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 154/287 (53%), Gaps = 37/287 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A++ AEA+N KS FLA MSHE+RTPM IIG+ +L D L EQ V I+ S
Sbjct: 302 AKQAAEAANFAKSDFLAVMSHEIRTPMNGIIGMTNLL-LDTSLKPEQLDYVETIRNSGDT 360
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ELE FDL+ +EE +D+ + Q + +E + L + P
Sbjct: 361 LLTIINDILDFSKIESGKLELEKHPFDLRVCVEEALDLLASQATAKGIELIYKLESHTPT 420
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL++N++KFT+ G I++
Sbjct: 421 QIIGDITRLRQIILNLVSNAVKFTTDGEILVT---------------------------I 453
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+QQ + N + D +L F + DTG GI + + + +F++F Q D STTR++GGTGLG
Sbjct: 454 STQQQISPEENSQHDCELQ--FAISDTGVGIPRDRLDRLFQAFSQVDVSTTRRYGGTGLG 511
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
L+I + L MGG + V + G+ +L Q++ A F
Sbjct: 512 LAIGKRLSEIMGGRMWVESEEGKGSTFYFTAIL-------QVHPASF 551
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 27/131 (20%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILL ED + Q +A K+LEK+G V +GL+AV+A + L
Sbjct: 719 LKILLVEDGLVNQKIALKLLEKLGYQADVANNGLEAVKATQKQL---------------- 762
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++ MD QMP+MDG EAT +IRK S+ I+A+TA+A D ++CL
Sbjct: 763 -------YDVVFMDVQMPEMDGLEATRQIRKELSKQPQ----IIAMTANARPEDRQECLN 811
Query: 1070 VGMNAYLTKPI 1080
GMN Y++KPI
Sbjct: 812 AGMNDYISKPI 822
>gi|383761309|ref|YP_005440291.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381577|dbj|BAL98393.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1100
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 136/253 (53%), Gaps = 39/253 (15%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTPM A+IG+ +L S LT EQ V I+ S ALL ++N ILD
Sbjct: 596 KSIFLANMSHEIRTPMNAVIGMTSLLLST-PLTPEQRDYVETIRTSGDALLSVINDILDF 654
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESG++ELEN F L+ +E+ D+F+ + + VE + + ++P + GD R+ Q
Sbjct: 655 SKIESGRLELENHPFQLEACIEDTFDLFASKAAAQGVELISRIDASVPAWIMGDLSRLRQ 714
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NL+ N++KFT G +I+R E
Sbjct: 715 ILVNLVGNAVKFTHEGEVIVRATAEA---------------------------------- 740
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
E L L V DTG GI + +F+ F Q DPS +R++GGTGLGL I R L M
Sbjct: 741 --EGELLRLHLAVQDTGIGIAPDQIHRLFKPFSQVDPSLSRRYGGTGLGLVISRRLAQLM 798
Query: 663 GGEIKVVKKNSPG 675
GG+I V +++PG
Sbjct: 799 GGDIWV--ESAPG 809
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 84/145 (57%), Gaps = 28/145 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q V ++LEK G + V +GL+A+EAL+R
Sbjct: 979 LRILLAEDNLVNQKVVLRMLEKFGCSADVASNGLEALEALHRQ----------------- 1021
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKS-ESEHGARNIPIVALTAHAMNADEKKCL 1068
+DL+LMD MP+MDG EAT +IR+S SE R IVALTA A+ D++ CL
Sbjct: 1022 ------PYDLVLMDMHMPEMDGLEATKQIRRSLASERQPR---IVALTAAALREDQEACL 1072
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLT 1093
GM+A+LTKP+ E + S ILR T
Sbjct: 1073 AAGMDAFLTKPVRPEHLAS-ILRTT 1096
>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 957
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 158/286 (55%), Gaps = 39/286 (13%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
I V G C+L +T +S+ + EL AR+ AEA+N KS+FLANMSHE+RTPM
Sbjct: 541 ITVNGEQCLLNITRDISERKRYEEELQQ---ARQAAEAANRAKSEFLANMSHEIRTPMNG 597
Query: 441 IIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500
+IG++++L+ +L +EQ + ++ S+ LL LLN ILDLSK+E+GK+ LE +F L+
Sbjct: 598 VIGMVQLLQFT-RLNSEQQEYLQCLETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLR 656
Query: 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI 560
++E+V Q ++ L+D+IP + GDP R+ QI NL+ N+IKFT++G I
Sbjct: 657 HSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGSI 716
Query: 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC 620
I A TD +++ L +C V DTG
Sbjct: 717 TI-------------AARITD----------------------QQNGTLTICLSVSDTGI 741
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
G+ + +F FEQ D STTR+ GGTGLGL+I R L MGG I
Sbjct: 742 GMTPEALQRIFAPFEQADNSTTRRFGGTGLGLTICRRLAELMGGRI 787
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED +L+++G V VV DG QA++ R R
Sbjct: 830 LQLLLAEDNAPNAATITAMLKRMGHQVEVVNDGKQALD-----------RWRC------- 871
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
R+D +L+D MP M G EAT IR+ E + G ++IPI+A+TAHA+ D L
Sbjct: 872 -----NRYDALLLDVSMPVMGGSEATRLIREEEQQTG-QHIPIIAVTAHALRGDRDLFLQ 925
Query: 1070 VGMNAYLTKPIDSERMVSTILRLT 1093
G + Y+ KP+D + + + RLT
Sbjct: 926 NGFDGYVAKPVDMQHLARELERLT 949
>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
Length = 944
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 138/256 (53%), Gaps = 32/256 (12%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLA MSHE+RTPM AIIG+ +L D LT EQ V I++SS ALL LLN +
Sbjct: 267 NQAKSLFLATMSHEIRTPMNAIIGMTGLLL-DRALTEEQRDFVATIRQSSEALLTLLNDV 325
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LD SK+E+G+ E E FDL++ +E ++D+ +V+ S ++ DL+ +P+ + GD R
Sbjct: 326 LDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASR 385
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ Q+ NL+ N++KFT G ++ L ++ A++
Sbjct: 386 LRQVLLNLVGNALKFTEHGGAVVSVEGLALGGTEGAADW--------------------- 424
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
L F V DTG GI + +F+ F Q D S +R+ GGTGLGL+I + LV
Sbjct: 425 ----------ELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLV 474
Query: 660 NKMGGEIKVVKKNSPG 675
MGG I V + PG
Sbjct: 475 EAMGGTIWVESEGVPG 490
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 27/169 (15%)
Query: 924 QIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983
Q+ R+ +P + + L ILL ED Q +A +LE++G V +G
Sbjct: 643 QLPEPRQTRPSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGR 702
Query: 984 QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES 1043
QA++AL++ R+D +LMD QMP+MDG EAT IR+
Sbjct: 703 QALQALSQK-----------------------RYDAVLMDLQMPEMDGLEATRRIRQ--- 736
Query: 1044 EHGARNIP-IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
E + P ++A+TA+AM++D ++C GM+ +L KPI E + + +LR
Sbjct: 737 ELPPKAQPWVIAMTANAMDSDREQCFSAGMDDFLGKPIRVEALTAALLR 785
>gi|455788927|gb|EMF40883.1| GHKL domain protein [Leptospira interrogans serovar Lora str. TE
1992]
Length = 440
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 180/358 (50%), Gaps = 55/358 (15%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q I+KS
Sbjct: 57 LKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQQHIRNLIQKSG 115
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q + + +D S +
Sbjct: 116 ENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDYSPDF 175
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 176 IDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------------------ 217
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
K+ +V D+G GI + K + +F+ F Q D S +RK+GGTG
Sbjct: 218 ------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLDSSISRKYGGTG 259
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQIYDAD--FPNT 701
LGL+I + LV M G+I V + S G+ + +LL S+ +I D P+T
Sbjct: 260 LGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPEITDLSSLSPDT 319
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPY 759
+++A S ++S L+K K+ ++ ++ L+ I+ V + FD +
Sbjct: 320 FILIAEDDSTNIFLLSGILKKLKIK----------FELAKDGLEAITKVRVSRFDLIF 367
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 321 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 359
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 360 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 415
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 416 MSDFLGKPYYKKDIEQMI 433
>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 962
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 37/282 (13%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILD 481
KSQFLANMSHELRTPM ++G+L++ L+S +L Y + +S +LL++LN ILD
Sbjct: 571 KSQFLANMSHELRTPMTGVLGMLDLALQSTSELQQSDY--IRTAYRSGRSLLQILNDILD 628
Query: 482 LSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVF 541
LSKVE+GK L+ F L+ + E D+ + + +E LDL+ ++P +V GD R+
Sbjct: 629 LSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQDLPWHVVGDQVRLR 688
Query: 542 QIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM 601
Q+ +NL+ N++KFT G + ++ ++ + TAE
Sbjct: 689 QVLTNLVGNAVKFTERGRVTVQ-----VEVADKTAE------------------------ 719
Query: 602 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661
+L L F V DTG GI Q K +F++F Q D S TR +GGTGLGL+I + +V +
Sbjct: 720 -----AELLLRFRVSDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGTGLGLAISKEIVQR 774
Query: 662 MGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVV 703
MGGEI G+ LG + + + A +VV
Sbjct: 775 MGGEIGFESGEGVGSTFTFTARLGIAEDCDDLAVAAGSESVV 816
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 24/162 (14%)
Query: 928 SRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
+R Q S N ++ GLR+L+AED I+ V +L+K+ V DG VE
Sbjct: 818 TRTPQDVSEGNRQERNRQEGSGLRLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVE 877
Query: 988 ALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA 1047
QG +DLILMD QMP++DG++AT IR+ E E GA
Sbjct: 878 KWR--------------QGE---------YDLILMDVQMPRLDGFQATRAIREQEQEQGA 914
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
R IPI+A+TAHAM D+++CL GM+ Y++KPI+ + + +
Sbjct: 915 R-IPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKV 955
>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
Length = 1318
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 158/304 (51%), Gaps = 44/304 (14%)
Query: 383 VIGCICILI-LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
V G + IL+ LT E +LR DA+ A+A + K +FLANMSHE+RTPM I
Sbjct: 573 VSGIVGILLDLTERKLMETELR-------DAKETADAMSRAKGEFLANMSHEIRTPMNGI 625
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G++ L + +L Q+ + +I +S+ LL ++N ILD SK+E GK+ +E +F L +
Sbjct: 626 LGMVH-LALNTELDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDE 684
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHII 561
+ L ++ S++ +E +LD+ +P + GDP R+ Q+ NL N++KFT G ++
Sbjct: 685 VFDNLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVV 744
Query: 562 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG 621
+ A R +L + + + L F V DTG G
Sbjct: 745 V-------------------------AVRIELLTERD----------VVLHFSVKDTGIG 769
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681
ID+ K +F++F Q D S TR+ GGTGLGLSI + LV MGG++ V G+
Sbjct: 770 IDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSSTLGAGSTFAFT 829
Query: 682 LLLG 685
+ G
Sbjct: 830 ITCG 833
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 28/154 (18%)
Query: 938 NSSSNQ--KRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
N+ +NQ K + G ILL ED + Q VA +L+ V +G QA+
Sbjct: 977 NTPANQLEKPVFGGQTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAI--------- 1027
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
++L+ P DL+LMD QMP +DG AT +IR++ + +PI+A+
Sbjct: 1028 ------NMLEQHP--------VDLVLMDMQMPVLDGVSATEQIRRNPD---WQQLPIIAM 1070
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
TA+AM +D +C+ GMN++L KPI+ + T+
Sbjct: 1071 TANAMQSDVDRCIAAGMNSHLAKPINVRNLYQTL 1104
>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1390
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 145/271 (53%), Gaps = 35/271 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++A+ AE+++ KS FLA MSHE+RTPM IIG+ E+L QL+ EQ + IK S
Sbjct: 736 VEAKLAAESASKAKSDFLATMSHEIRTPMHGIIGMTELLMQT-QLSREQTEYLEIIKASG 794
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+LLRL+N ILD SK+E+GK ELE+ F L+ L E ++ ++Q +E +S +
Sbjct: 795 DSLLRLINDILDFSKIEAGKFELEHIGFGLRAMLGETMESLAIQAHQKGLELAFRVSPEV 854
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P ++GDP R+ QI NL+ N+IKFTS+G + +D +A P
Sbjct: 855 PDVLKGDPVRLRQIIVNLVGNAIKFTSAGEVF-------MDVIVESASTP---------- 897
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
N+ L F V DTG GI + K + +F SF Q D +R++GGTG
Sbjct: 898 -----------------NETTLHFSVSDTGIGIPEDKQQEIFSSFTQVDTGMSRRYGGTG 940
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
LGL+I L M G++ V K G+ L
Sbjct: 941 LGLAIGSRLAAMMDGKLWVESKIGNGSTFHL 971
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 24/146 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILL ED P+ Q +A ++LEK G TVS+ +G +A+++L AES
Sbjct: 1144 LKILLVEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSLE----AES------------ 1187
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FDLILMD +MP+M+G+E T IR +E G +IPI+A+TAHAM D ++CL
Sbjct: 1188 -------FDLILMDIEMPEMNGFETTQAIRNAEQSSG-EHIPIIAMTAHAMTGDRERCLD 1239
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKN 1095
GM+ Y++KP+DS + TI + T++
Sbjct: 1240 AGMDGYVSKPVDSRELFFTIDKFTQD 1265
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GL +L+ +D + +IL G + V + A+ A+ +
Sbjct: 994 LMGLPVLVVDDNATNLRILKEILTGFGMNPTCVNEASAALTAVK--------------EA 1039
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+E+P F L ++D MP+MDG+E + I ++ G+R I+ LT+ D ++
Sbjct: 1040 QKTESP----FLLTILDANMPEMDGFELSRTIVETT---GSRGPVIMMLTSSRNRGDSER 1092
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
C G++ YL KPI + + I
Sbjct: 1093 CKQCGISIYLKKPIKQAELFNAI 1115
>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 921
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 37/266 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ ++G ++LK+ +L Q + I+KS+
Sbjct: 279 AKKRAQEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKT--RLNPSQQDYLLTIEKSAN 336
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ LEN FD + L+E++ + + +E L + D IP
Sbjct: 337 NLLTIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIP 396
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
++ GD R+ Q+ +NLI N++KFT G+I + T E +D
Sbjct: 397 PSLIGDALRIQQVLTNLIGNAVKFTERGNIDV------------TVELKSD--------- 435
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++D + L F V DTG GI + + +F++F Q D S +R++GGTGL
Sbjct: 436 -------------KDDEGIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + LV++MGGE+ + + G+
Sbjct: 483 GLVITQKLVSQMGGEVSLTSRLHQGS 508
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDLI MD QMP+MDG A +I +E R P++A+TAHAM + ++ + GM+ YL
Sbjct: 711 FDLIFMDIQMPEMDGVTACQQIHDTELN---RTTPVIAVTAHAMAGERERLINAGMDDYL 767
Query: 1077 TKPIDSERMVSTIL 1090
TKPI+ E ++ +L
Sbjct: 768 TKPIE-EHILQQVL 780
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 170/327 (51%), Gaps = 33/327 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV + VI + I +++ K+ A+ + + +AEA++ KSQFLA +SHE+
Sbjct: 640 INASVGVFVITLLLGHIFYAAINRIAKVEADYRQMRELKVRAEAADVAKSQFLATVSHEI 699
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D +L Q KS L+ +++ +LD +K+E+GK+ELE
Sbjct: 700 RTPMNGVLGMLQMLM-DTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEA 758
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FD + L+E++ +FS + + +E + S+ +P+ V GDP R QI +NL+ NS+KF
Sbjct: 759 VAFDPRAILDEVLSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKF 818
Query: 555 T-SSGHIII--------------------RGWCENLDTSKNTAE----FPTDRKKFGRAF 589
T GH+ + G + D + T + FP + A
Sbjct: 819 THDKGHVFVSVHLASEVKNPLHIMDAVLREGLNLSQDITNRTYDTLSGFPVCNRWKSWAN 878
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
TKL E + L V+DTG GI +F F Q D ST+R +GGTG
Sbjct: 879 FTKLS-------GTNEPEIIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTG 931
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+GLSI R LV+ MGGEI V + G+
Sbjct: 932 IGLSISRCLVDLMGGEIGFVSEPGIGS 958
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 39/162 (24%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+IL+ +D + + VA +L+K GA V+ V G A++ L E
Sbjct: 1141 QILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKML--------------------E 1180
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-----------------NIPIV 1053
P FD MD QMP+MDG+EAT +IR ESE + +IPI+
Sbjct: 1181 LPHN--FDACFMDLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPIL 1238
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
A+TA + + ++C+ GMN Y++KP + E++ + R K+
Sbjct: 1239 AMTADSTQSSNEECIKCGMNDYVSKPFEEEQLYMAMARFFKS 1280
>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
Length = 861
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 152/282 (53%), Gaps = 36/282 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR +AE ++ KS FLANMSHE+RTPM ++G+ E+L+ + LT+EQ V I+ S
Sbjct: 321 EARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLR-ESPLTDEQRLYVDTIRGSGE 379
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+E+ K++L FDL++ + E++ + +E + + +P
Sbjct: 380 ALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMFLP 439
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ V GDPGRV QI +NL+ N++KFT+ GH+++R G
Sbjct: 440 QRVVGDPGRVRQILTNLVGNAVKFTNEGHVLVR--------------------VLG---- 475
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ A+ A++ R V+DTG G+ K E +F F Q + R GTGL
Sbjct: 476 ---LRHAHGALDVR--------ITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGL 524
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
GL+I + LV M GEI V + G+ L + L ++ S++
Sbjct: 525 GLAITKRLVEMMEGEIWVKSEPGQGSCFGLRIPLAVAAPSEE 566
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 31/177 (17%)
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
FR R G+S R P + + L +LLAED Q+V K+++K+G + +
Sbjct: 707 FRHRPVTGASPRPHPAERPVARPAPR----PLDVLLAEDNRTNQLVFRKMVQKLGQPLRL 762
Query: 979 --VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
+G++AV A R DLI MD MP MDG EAT
Sbjct: 763 RFADNGIEAVRAYREQ-----------------------RPDLIFMDISMPHMDGREATR 799
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
EIR E+ G +PI+A+TAHAM D + + G++ YLTKP+ + + + + T
Sbjct: 800 EIRALEA--GGPRVPIIAVTAHAMTGDREGVIEAGLDDYLTKPLRKAELAALLDKWT 854
>gi|386284841|ref|ZP_10062060.1| two-component sensor histidine kinase/response regulator
[Sulfurovum sp. AR]
gi|385344244|gb|EIF50961.1| two-component sensor histidine kinase/response regulator
[Sulfurovum sp. AR]
Length = 1069
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 36/310 (11%)
Query: 395 GVSKEMKLRAELI-SHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G + K +L+ + D + A +N KS FLANMSHE+RTP+ I+G EIL+S +
Sbjct: 386 GTKEAYKFLEDLVETAKDDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTN- 444
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT EQ + I KSS LL ++N ILDLSK+ES K+E+E+ FD +E E V+ ++V
Sbjct: 445 LTEEQEEFLSIIDKSSENLLSIINNILDLSKIESNKVEIESIVFDAAEEFESAVETYAVA 504
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ N++ + I ++GDP ++ +I NL++N++KFTS G + NLD K
Sbjct: 505 ATEKNIDMNYYMDPTISAKLKGDPTKIKEIVINLLSNAVKFTSYGGEV------NLDIVK 558
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
T E +R KF V D G G+ + + +F++
Sbjct: 559 ETDENGVNRVKFS----------------------------VRDNGIGMTKDQQSRIFDA 590
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
F Q D S TRK+GGTGLGL+I V MGG++++ GT L L + ++
Sbjct: 591 FSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDYGTTFFFSLPLEEVASTEVN 650
Query: 694 YDADFPNTVV 703
Y+ F + V+
Sbjct: 651 YENAFNDLVL 660
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 26/154 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + Q + +ILE+ G TV + +GL++ E +RRS
Sbjct: 791 KVLVTEDNIINQKLIRRILEEHGITVDIANNGLESFE-----------KRRS-------- 831
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+ MD QMP MDG EAT EI E + +IPIVALTA+A+ D ++ L
Sbjct: 832 ----GDYDLLFMDIQMPVMDGIEATHEILDYEEDEELAHIPIVALTANALKGDRERFLAE 887
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEATGTT 1104
GM+ Y+TKPI++ ++ L K + +A G T
Sbjct: 888 GMDEYITKPIETTELLYI---LNKFLSDKAIGET 918
>gi|417772538|ref|ZP_12420426.1| GHKL domain protein [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418683146|ref|ZP_13244354.1| GHKL domain protein [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400325053|gb|EJO77334.1| GHKL domain protein [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409945215|gb|EKN95231.1| GHKL domain protein [Leptospira interrogans serovar Pomona str.
Pomona]
gi|455667754|gb|EMF33045.1| GHKL domain protein [Leptospira interrogans serovar Pomona str. Fox
32256]
Length = 841
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF +K +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKKTVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRTFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSELVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|334120111|ref|ZP_08494194.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457293|gb|EGK85918.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1521
Score = 166 bits (420), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 157/302 (51%), Gaps = 22/302 (7%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+ ++ V E++ + + AR +A A+ KS+FLA MSHE+RTPM +IG+ +L
Sbjct: 653 VKLMAQWVGSELERQQTDVDLAKARDQALAATRAKSEFLATMSHEIRTPMNGVIGMTGLL 712
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
D LT EQ V I+ S ALL L+N ILD SK+ESGK++LE FD++ +EE +D
Sbjct: 713 L-DTPLTREQRDFVETIRSSGDALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLD 771
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
+ + + + +E + +P GD R+ QI NL++N++KFT +G +++ +
Sbjct: 772 LVAAKAAEKKLEVGYLIDRAVPATAIGDSTRLRQILINLLSNAVKFTEAGEVVVAVTAKK 831
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+ S A+ P A N + + F V DTG GI + +
Sbjct: 832 ISVSAANAKEPP----------------AINGEPVVINPAYEIHFAVKDTGIGIPSDRMD 875
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV-----VKKNSPGTLMQLYLL 683
+F+SF Q D ST+R++GGTGLGL+I + L MGG + V V N P
Sbjct: 876 RLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGSVAGNPPADFRSAVFD 935
Query: 684 LG 685
LG
Sbjct: 936 LG 937
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 23/91 (25%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLA+D + Q VA +IL+++G V +G++ +EAL R
Sbjct: 1145 LRILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRRQ----------------- 1187
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRK 1040
+D++LMD QMP+MDG E T IR+
Sbjct: 1188 ------PYDVVLMDVQMPEMDGLETTRRIRE 1212
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 1025 QMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
Q PK+ E+ RKS+ E+ P IVA+TA+AM D ++C+ GM+ YL+KPI E
Sbjct: 1266 QNPKLTEEESNN--RKSKIENRKSTRPWIVAMTANAMQGDREECMAAGMDDYLSKPIAIE 1323
Query: 1084 RMVSTIL 1090
++V ++
Sbjct: 1324 QLVRALI 1330
Score = 43.5 bits (101), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL ++D QMP+MDG +IR+ +P+V LT+ + + A+L
Sbjct: 1043 FDLAVLDMQMPEMDGLALAAQIRRYPD---CEKLPLVMLTSIGRQEINSPAMEMDFAAFL 1099
Query: 1077 TKPIDSERMVSTILRLTKNMPSEATG 1102
KPI ++ + ++ + +E G
Sbjct: 1100 NKPIKQSQLYNVLINIFGEQTTEFKG 1125
>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1159
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 164/308 (53%), Gaps = 42/308 (13%)
Query: 389 ILILTNGVSKEMKLRAEL---ISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
+L + N V++EM+ + EL I L+ R +A ++ K FLANMSHE+RTPM AIIG+
Sbjct: 370 LLCVGNNVTEEMRHKKELENLIVELEKTREEAVEASRAKGDFLANMSHEIRTPMNAIIGM 429
Query: 445 LEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
+ L++D L +Q + +I S+ ALLR++N ILD SK+E+G++++E EF+L+ L
Sbjct: 430 SHLALQTD--LAPKQRDYLKKIDGSAKALLRIINDILDFSKIEAGRLDMEAAEFNLEDVL 487
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
+ + + + + +E + +P ++ GD R+ QI NL NS+KFT G I+I
Sbjct: 488 DSVATLITPKAEEKGLEVLFRTEPGLPLHLVGDSLRLGQILINLAGNSVKFTEQGEIVI- 546
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGID 623
S E K ++QA L F V DTG G+
Sbjct: 547 --------STQLVE--------------KTEEQA------------VLAFSVRDTGIGMT 572
Query: 624 QSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL 683
+ +F+ F Q D STTRK GGTGLGLSI + LV MGG+I V + G++
Sbjct: 573 AEQAGKLFQPFVQADSSTTRKFGGTGLGLSISKQLVEIMGGQISVESEPGKGSVFDFTAA 632
Query: 684 LGASSESK 691
G + +S+
Sbjct: 633 FGLARKSR 640
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 28/153 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G R+L+AED + Q VA +ILE G V + +G +AVE L++
Sbjct: 800 IRGSRVLVAEDNEINQQVAREILESAGLVVDIAANGREAVE---------------LVRA 844
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+P +D +LMD QMP++DG +AT+E+R + R++PI+A+TAHAM D ++
Sbjct: 845 NP--------YDAVLMDIQMPELDGLQATVELR---GDGRYRDLPIIAMTAHAMAGDREQ 893
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
L GM+ ++TKPID + + + +LR K P E
Sbjct: 894 SLKAGMDDHVTKPIDPDVLFAVLLRWIK--PGE 924
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 20/146 (13%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+GLR+L+ +D+ + + LE + V V G +A+ AL+R AA+ +G
Sbjct: 650 LQGLRVLVVDDSGTSREILTDALESMSFEVGVATTGAEALVALDR--AAD--------EG 699
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P FDL+LMD +MP MDG EA I+KS H A +V +TA+ +
Sbjct: 700 RP--------FDLVLMDYKMPGMDGIEAARRIKKSSRLHQAPT--VVMVTAYGREEIMSR 749
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL 1092
VG+ +L KP+ +++TI+ +
Sbjct: 750 AERVGVEGFLIKPVGQSVLLNTIMEV 775
>gi|410613317|ref|ZP_11324379.1| integral membrane sensor hybrid histidine kinase [Glaciecola
psychrophila 170]
gi|410167161|dbj|GAC38268.1| integral membrane sensor hybrid histidine kinase [Glaciecola
psychrophila 170]
Length = 589
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 153/285 (53%), Gaps = 37/285 (12%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
V K+ +L E + ++A+A+ + KS FLANMSHE+RTPM +IG+LE++ S+ +L
Sbjct: 188 VEKQRELELERDVAIQHEQEAKAATDAKSAFLANMSHEIRTPMNGVIGMLELV-SNSKLD 246
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
EQ + K+S+ +L+ ++N ILD SK+E+G++ LE EFDL+K E + Q +
Sbjct: 247 EEQQDFMATAKRSAESLMIIINDILDFSKIEAGELTLERVEFDLEKIFSEFIHDQQFQAN 306
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575
++ L+ NV GDP R+ Q+ SNL++N+IKFT SG II++ +L+T
Sbjct: 307 KKGLKLKLEKQYIRQENVVGDPHRIIQVLSNLLSNAIKFTESGSIIVQ---YDLNTL--- 360
Query: 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
D+ L L V DTG G+ + +F+SF
Sbjct: 361 ------------------------------DDHLCLSVMVTDTGIGVSDASLPYLFDSFS 390
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
Q D STTR GGTGLGL+I + + MGG I K G++ Q
Sbjct: 391 QADMSTTRNFGGTGLGLAITKQICELMGGGITAQSKLGEGSVFQF 435
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 20/142 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+LL ED + Q V IL + V V DGL+A+ L
Sbjct: 464 LRVLLVEDNLINQEVMIAILNSLEIKVDVANDGLEALAMLTH------------------ 505
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
T FDLILMDCQMP +DGYEAT +R + IPI+ALTA+ MN++ +KCL
Sbjct: 506 --TQTSTFDLILMDCQMPNLDGYEATRRLRAGAAGELFSKIPIIALTANTMNSEREKCLE 563
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
GMN YLTKPI+++ + S + +
Sbjct: 564 AGMNEYLTKPINTDALKSILAK 585
>gi|384486106|gb|EIE78286.1| hypothetical protein RO3G_02990 [Rhizopus delemar RA 99-880]
Length = 2359
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 36/255 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR AE +N KS+FLANMSHE+RTPM IIG+ L + +LT +Q + + + +
Sbjct: 1833 AREAAELANRSKSEFLANMSHEIRTPMNGIIGMTS-LTLETELTRQQRENLMIVSSLANS 1891
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +++ ILD+SK+E+G+M +E F L+ + ++ +V+ + ++ + + +IP
Sbjct: 1892 LLTIIDDILDISKIEAGRMNIETIPFSLRSAIFSVLKTLAVKANQKKLDLIYHVDQSIPD 1951
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R+ Q+ +NLI N++KFT+ G +++R N+ G F
Sbjct: 1952 QVIGDPLRLRQVITNLIGNAVKFTTRGEVVLRTRAVNM----------------GENFV- 1994
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+L LC V DTG GI + K +F++F Q D STTR++GGTGLG
Sbjct: 1995 ----------------RLELC--VSDTGIGIQEDKLHVIFDTFCQADGSTTREYGGTGLG 2036
Query: 652 LSIVRTLVNKMGGEI 666
LSI R LV MGG++
Sbjct: 2037 LSISRHLVRLMGGDL 2051
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 24/144 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +LLAED + Q +A +ILEK G VSVV +G AVEA
Sbjct: 2222 LEVLLAEDNDVNQKLAVRILEKFGHHVSVVANGKLAVEAY-------------------- 2261
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA-RNIPIVALTAHAMNADEKKCL 1068
++ FDLILMD QMP M G+EAT +IR+ E + R+IPI+ALTAHAM D +KCL
Sbjct: 2262 ---ESQYFDLILMDVQMPVMGGFEATQKIREIEKASASNRHIPIIALTAHAMIGDREKCL 2318
Query: 1069 GVGMNAYLTKPIDSERMVSTILRL 1092
GM+ Y+TKP+ +++ I +
Sbjct: 2319 EAGMDEYVTKPLRFPELIAAIKKF 2342
>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
salsuginis DSM 16511]
Length = 800
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 205/418 (49%), Gaps = 63/418 (15%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G K +L E++ + RR A+ N KS FLANMSHE+RTPM IIG E+LKS
Sbjct: 113 GYRKAFELLQEIVRQAREDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKST-P 171
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L +EQ I+KSS+ LL ++N ILDLSK+ES K+E+E+ F+ EL+ +D F V
Sbjct: 172 LNDEQQEFANIIEKSSHNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTIDNFGVV 231
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ +++E + +I ++GDP ++ +I +NL+NN++KFT +G I E L+ ++
Sbjct: 232 AAENDIELYYFIDPSISSRLKGDPTKIKEILTNLLNNAVKFTEAGG-EISVEIEKLEATQ 290
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
DR + F V DTG G+ Q + + +FE
Sbjct: 291 G------DRS--------------------------LIEFRVIDTGIGMSQEQIKKIFEP 318
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
F Q D S TRK+GGTGLGL+I + V MGG++ V + G+ L L + +
Sbjct: 319 FTQADSSITRKYGGTGLGLTITKEYVELMGGKLLVESEEGKGSTFSFTLPLEEIRDEETD 378
Query: 694 YDADFPNTVVVLATVGSMERMIISQWLRK------------KKVSTLET----------- 730
Y F + ++ + + R +Q+L++ + L T
Sbjct: 379 YRNAFTDVILCIYQGDEVNRF--NQYLQRYADYFGMELQPFRSAQELHTFVSEGNCPALL 436
Query: 731 SEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLK-AEMTNIKALIDPV-YVVVIDI 786
++ + Q LRE+LD + P A +SRE LK + TN L P Y ++D+
Sbjct: 437 MDFDRIPQSLREVLDRL-PEEDLYLLARVTSREELKDYKFTNENILFKPATYTKILDM 493
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + Q + ILE +G V + +GL+A E L +G+
Sbjct: 521 KVLVVEDNIINQKLVKNILEGLGLDVDIANNGLEAFE---------------LRRGND-- 563
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DLI MD QMP M+G EAT EI + E + ++PIVALTA+A+ D ++ L
Sbjct: 564 ------YDLIFMDIQMPVMNGIEATHEILEYEEDEELPHVPIVALTANALKGDRERFLAE 617
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKN 1095
GM+ Y++KPI+ ++ + + K+
Sbjct: 618 GMDEYISKPIEMSELIYILNKFLKD 642
>gi|416394702|ref|ZP_11686249.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
gi|357263210|gb|EHJ12245.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
Length = 723
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 150/270 (55%), Gaps = 22/270 (8%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A +KAEA+N K +FLANMSHELRTP+ AI+G +I++ +L EQ + I S
Sbjct: 239 EAVKKAEAANRIKGEFLANMSHELRTPLNAILGFAQIMRRSSKLDAEQQENLSIITGSGE 298
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL L+N++LDLSK+E+G+ + TE D + L++L DMF + + + + S N+P
Sbjct: 299 HLLNLINQVLDLSKIEAGRTIINKTELDFYRLLDDLEDMFQFKAEEQKLRLLFERSPNVP 358
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ +R D ++ Q+ NLINN++KFT G + +R E+L+ F
Sbjct: 359 QYIRTDQVKLRQVLINLINNALKFTEEGGVSLRVRGESLN--------------FMETND 404
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
TK + N ++ K + E++DTG GI Q + + +FE F Q GTGL
Sbjct: 405 TK---ETENKLS----TKKTIIIEIEDTGQGISQEELDRLFEPFVQS-KGVKNNQEGTGL 456
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GL+I R +N MGG+I + + GT+++
Sbjct: 457 GLTISRKFINLMGGDIAMNSEVGRGTIIKF 486
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 26/130 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D + + K+L +G + +G +A++ Q P
Sbjct: 519 RILVVDDRYSNRELVVKLLTPLGFEIRTASNGKEAIQVWQ--------------QWEPH- 563
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
LI MD +MP MDGYEAT I+ + + I+ALTA ++ L
Sbjct: 564 --------LIWMDMRMPIMDGYEATKVIKTT---MKGQATAIIALTASVFEEEKAVVLST 612
Query: 1071 GMNAYLTKPI 1080
G ++++ KP
Sbjct: 613 GCDSFIRKPF 622
>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
gi|387868577|ref|YP_005700046.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
Length = 919
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 152/266 (57%), Gaps = 38/266 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG +++K+ L+ Q + I++S+
Sbjct: 277 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTP--LSATQIDYLHTIERSAN 334
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N +LD SK+E+GK+ LE+ F L++ ++E+ + + + +E L++ +++P
Sbjct: 335 NLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVP 394
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+V GDP R+ Q+ +NL+ N+IKFT G+I IR
Sbjct: 395 EHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIR--------------------------- 427
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q A+ L +V DTG GI + + +F++F Q D S TR+HGGTGL
Sbjct: 428 IELRSQTAQAVE--------LEVQVHDTGIGISERQQSQLFQAFRQADASITRRHGGTGL 479
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL I + L+N+MGG+I + G+
Sbjct: 480 GLVITQKLINEMGGDIAFHSQPHKGS 505
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
D+ILMD QMP+MDG T E+ + + H PI+A+TAHA+N + ++ L GM+ YL
Sbjct: 708 LDIILMDIQMPEMDGIRTT-ELLRQQPRHA--TTPIIAVTAHAINGERERLLRAGMDDYL 764
Query: 1077 TKPIDSERMVSTILRLTKNMPSEAT 1101
KPID + + R + PS T
Sbjct: 765 AKPIDENMLRQLLNRYSGERPSAPT 789
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 176/341 (51%), Gaps = 46/341 (13%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ + VI + I+ S+ K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 309 ITNPLGAFVIWMLVGYIICAAWSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 368
Query: 435 RTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM ++G+L+ +L +D +T + ++ Q+ AL+ L+N +LD +K+E+G++ELE
Sbjct: 369 RTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQM--CGRALITLINDVLDRAKIEAGRLELE 426
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FDL+ +++++ +FS + +E + + D++P+ V GDP R QI +NL+ N++K
Sbjct: 427 AVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKLVVGDPWRFRQILTNLVGNAVK 486
Query: 554 FTSSGHIIIR-GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN---------- 602
FT GH+ +R EN + N T K G K++ AN A+N
Sbjct: 487 FTDRGHVFVRVCLAENSNVEANQVLNVTLNGKDG-----KVESTANGALNTLSGFQAADE 541
Query: 603 ------FR---------------------EDNKLALCFEVDDTGCGIDQSKWETVFESFE 635
F+ + + + L ++DTG GI + VF F
Sbjct: 542 RNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDTGVGIPLHAQDRVFTPFM 601
Query: 636 QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
Q D ST+R +GGTG+GLSI + L MGG+I + S G+
Sbjct: 602 QADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGS 642
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 37/170 (21%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S + +L G IL+ +D + VA L+K GA V V G A+
Sbjct: 815 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDAI----------- 863
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE-----------SEHG 1046
SLLQ P FD MD QMP+MDG+EAT +IR+ E S G
Sbjct: 864 ----SLLQ--PPH-----HFDACFMDVQMPEMDGFEATRQIREMEKKANEEQKKLTSTEG 912
Query: 1047 ARNI----PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092
+ + P++A+TA + A +KC+ GM+ Y++KP D E++ + RL
Sbjct: 913 STFVEWHSPVLAMTADVIQATYEKCMKSGMDGYVSKPFDEEQLYQAVSRL 962
>gi|448240549|ref|YP_007404602.1| hybrid sensory histidine kinase [Serratia marcescens WW4]
gi|445210913|gb|AGE16583.1| hybrid sensory histidine kinase [Serratia marcescens WW4]
Length = 908
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 151/256 (58%), Gaps = 38/256 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+D L+ Q + I++S+
Sbjct: 281 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTD--LSATQTDYLQTIERSAN 338
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N +LD SK+E+GK+ LE+ F L++ L+E+V + + + +E LD+ +++P
Sbjct: 339 NLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVVVLLAPSAHDKGLELTLDVHNDVP 398
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GD R+ QI +NL+ N+IKFT +G+I IR
Sbjct: 399 EQVIGDSLRLQQIITNLLGNAIKFTETGNIDIR--------------------------- 431
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L++Q D ++ + ++ DTG GI + + +F++F Q D S +R+HGGTGL
Sbjct: 432 VELRKQL--------DRRVEVEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTGL 483
Query: 651 GLSIVRTLVNKMGGEI 666
GL I + LV +MGG+I
Sbjct: 484 GLVITQKLVKEMGGDI 499
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
DLILMD QMPKMDG A+ IR+ + PIVA+TAHA + + + L GM+ YL
Sbjct: 708 LDLILMDIQMPKMDGIHASELIRQLPHHNST---PIVAVTAHAASGEREHLLQAGMDDYL 764
Query: 1077 TKPIDSERMVSTIL 1090
KPID E+M++ +L
Sbjct: 765 AKPID-EKMLTRVL 777
>gi|418697991|ref|ZP_13258972.1| GHKL domain protein [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410763064|gb|EKR29221.1| GHKL domain protein [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 689
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 185/369 (50%), Gaps = 55/369 (14%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 295 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 353
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 354 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 413
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 414 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 466
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 467 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 497
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 498 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 557
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPV 750
I D P+T +++A S ++S L+K K+ ++ ++ L+ I+ V
Sbjct: 558 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKIK----------FELAKDGLEAITKV 607
Query: 751 SSNGFDAPY 759
+ FD +
Sbjct: 608 RVSRFDLIF 616
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 570 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 608
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 609 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 664
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 665 MSDFLGKPYYKKDIEQMI 682
>gi|428773679|ref|YP_007165467.1| PAS/PAC sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428687958|gb|AFZ47818.1| PAS/PAC sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 944
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 156/290 (53%), Gaps = 44/290 (15%)
Query: 381 ILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
I+ G IC +S +K++ ELI A+ AEA+ KS F A MSHE+RTPM
Sbjct: 537 IIWHGYIC------DISDRIKIQQELIH---AKETAEAATKSKSAFFAMMSHEIRTPMNG 587
Query: 441 IIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500
+IG+ +L D LT EQ V I+ S +LL ++N ILD SK+ESGK+ELE +F+L+
Sbjct: 588 VIGMTGLL-LDTNLTPEQKKLVEIIRSSGDSLLTIINDILDFSKIESGKLELEKQDFNLR 646
Query: 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI 560
+ ++ + D+ Q +++ +P GD R+ Q+ NL+ N++KFT G +
Sbjct: 647 ECVDSVFDLLKYQAQKQDLDFYYFYDPELPTMFVGDISRIRQVLVNLLGNALKFTEKGEV 706
Query: 561 --IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618
I G TK++Q+ NN ++K + F V D+
Sbjct: 707 SLTISG--------------------------TKIEQRQNN------NSKYEIKFAVKDS 734
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
G GI + K + +F+SF Q D ST RK+GGTGLGL+I + L KMGG+I V
Sbjct: 735 GIGIPKQKQDRLFKSFSQVDSSTNRKYGGTGLGLAISKLLTEKMGGKIWV 784
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 25/132 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q VA L+K+G V +GL+ ++AL R
Sbjct: 827 LKILLAEDNTVNQKVALLSLKKIGYLADVASNGLEVIDALQRQ----------------- 869
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ILMD QMP+MDG AT IRK+ + +I +A+TA AM D CL
Sbjct: 870 ------HYDVILMDVQMPEMDGLTATRWIRKNYPKDQQPHI--IAMTAGAMENDRTLCLD 921
Query: 1070 VGMNAYLTKPID 1081
GMN Y++KPI+
Sbjct: 922 AGMNGYISKPIN 933
>gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 878
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 143/267 (53%), Gaps = 35/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L + A ++N KS FLA+MSHE+RTP+ IIG+ EIL D L++ Q + I SS
Sbjct: 366 LKTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSD-LSDHQKEVLTDIDTSS 424
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+ LL LLN ILDLSK+ESG ++L E D+++ + + + +F + ++ +E ++L + I
Sbjct: 425 HTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILFQSKATSKQLELNINLDERI 484
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + D R+ QI NL++N++KFT GHI + + E PT + F
Sbjct: 485 PPRIMVDDHRIKQIIMNLVSNAVKFTHEGHISV---------DVDYQESPTQKSVF---- 531
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V DTG GI++ K T+FE F Q D +R+ GGTG
Sbjct: 532 ---------------------LTFRVTDTGVGIERDKLNTIFEPFTQEDEGISRQFGGTG 570
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I R LV MGG++ GT
Sbjct: 571 LGLAICRQLVAMMGGKLTATSSKGIGT 597
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAITT------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E E G+ I I+ALTA + D + C
Sbjct: 797 ---GEQFDAILMDCMMPVMDGLTATKEIRRWEKEVGSDKITIIALTASVLEEDIQNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 778
Score = 166 bits (419), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 36/319 (11%)
Query: 391 ILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
I +N EM++ A I A KA+++N KS+FL+ MSHELRTPM AI+G+ +L
Sbjct: 243 IQSNNRDLEMEVAARTIELRTAMEKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLM- 301
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
D L +E+ S + I+ SS ALL L+N +LD SK+ESG ++LE+ F+L LEE +D+
Sbjct: 302 DKDLDDERQSYIKIIRSSSDALLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIV 361
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ + ++ ++ + +P V+GD R+ Q+ NL+ N++KFT GH+ + C +
Sbjct: 362 AAPRRDAPIDFIVTIDPKLPAIVKGDVTRLRQVLINLLGNAVKFTQKGHVWLEAKCCVVG 421
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
S+N + + DTG GI + +
Sbjct: 422 ESEN----------------------------------VFASIAIHDTGIGIPDDRKHRL 447
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA-SSE 689
F++F Q D S TR+ GGTGLGL+I + L MGG I+V + G+ Q + L +E
Sbjct: 448 FQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIPLNCEENE 507
Query: 690 SKQIYDADFPNTVVVLATV 708
+ Y + P+ V A++
Sbjct: 508 TLATYPSPNPDAVPFTASL 526
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
HQ+ + + + S N ++E L ILLAED L Q V I+++ G + +V DG
Sbjct: 624 HQVLGTAKPK-TKSDNKFDKPAPVIENLNILLAEDNKLNQKVFKLIMKREGYKIDIVDDG 682
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
+A+ A+ + R+DLI MD QMP MDG EAT IR S
Sbjct: 683 AEALAAILKQ-----------------------RYDLIFMDLQMPVMDGLEATRSIRSSG 719
Query: 1043 SEHGARNIP-IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
+ P I+ TA+ + GMN YL KP+ E + + + + N
Sbjct: 720 DKISQ---PWIIGFTANVESDAAPAIRAAGMNDYLPKPVKDENIRAALRKFADN 770
>gi|453064689|gb|EMF05653.1| hybrid sensory histidine kinase BarA [Serratia marcescens VGH107]
Length = 908
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 151/256 (58%), Gaps = 38/256 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK+D L+ Q + I++S+
Sbjct: 281 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTD--LSATQTDYLQTIERSAN 338
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N +LD SK+E+GK+ LE+ F L++ L+E+V + + + +E LD+ +++P
Sbjct: 339 NLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVVVLLAPSAHDKGLELTLDVHNDVP 398
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GD R+ QI +NL+ N+IKFT +G+I IR
Sbjct: 399 EQVIGDSLRLQQIITNLLGNAIKFTETGNIDIR--------------------------- 431
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L++Q D ++ + ++ DTG GI + + +F++F Q D S +R+HGGTGL
Sbjct: 432 VELRKQL--------DRRVEVEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTGL 483
Query: 651 GLSIVRTLVNKMGGEI 666
GL I + LV +MGG+I
Sbjct: 484 GLVITQKLVKEMGGDI 499
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
DLILMD QMPKMDG A+ IR+ + PIVA+TAHA + + + L GM+ YL
Sbjct: 708 LDLILMDIQMPKMDGIHASELIRQLPHHNST---PIVAVTAHAASGEREHLLQAGMDDYL 764
Query: 1077 TKPIDSERMVSTIL 1090
KPID E+M++ +L
Sbjct: 765 AKPID-EKMLTRVL 777
>gi|337751508|ref|YP_004645670.1| histidine kinase [Paenibacillus mucilaginosus KNP414]
gi|379724472|ref|YP_005316603.1| histidine kinase [Paenibacillus mucilaginosus 3016]
gi|336302697|gb|AEI45800.1| histidine kinase [Paenibacillus mucilaginosus KNP414]
gi|378573144|gb|AFC33454.1| histidine kinase [Paenibacillus mucilaginosus 3016]
Length = 398
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 151/293 (51%), Gaps = 37/293 (12%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIG 443
G + I + + ++ L E L+ A+ +AE + KSQFLA MSHE+RTP+ +I
Sbjct: 122 GFVSIYLAHKKLQQQTDLLNERTRELERAKVQAEQAAMAKSQFLAVMSHEIRTPLNGVIA 181
Query: 444 LLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
+ ++L+ D L EQ I++S ALL ++N ILDLSK+ESGKMEL+ +L+ L
Sbjct: 182 MADLLEETD-LNEEQREYTETIRRSGAALLYIINDILDLSKIESGKMELKEEAMNLRICL 240
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
E ++MF + ++E D+ N+P + GD R+ QI NLI N++KFT G + +
Sbjct: 241 METIEMFHAESRAKSLEMTYDIDPNVPECILGDESRLRQILINLIGNAVKFTDQGGVHV- 299
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGID 623
CE RE +L L V DTG GI
Sbjct: 300 SVCE----------------------------------REREGQRLQLELRVADTGIGIP 325
Query: 624 QSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+ K +F+ F Q D S TR++GGTGLGL+I R LV+ MGG I + + G
Sbjct: 326 EEKRSLLFQPFSQVDSSMTRRYGGTGLGLAICRNLVHLMGGTIALGSSDRQGA 378
>gi|345872552|ref|ZP_08824484.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343918342|gb|EGV29106.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1547
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 145/273 (53%), Gaps = 41/273 (15%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTPM AI+GL +L+ +T+EQ + +I ++ LL ++N ILDL
Sbjct: 950 KSTFLANMSHEIRTPMNAIVGLTFLLRQGG-VTHEQADRLAKIDSAAQHLLSIVNDILDL 1008
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESG++ELE T+F L L+ M + Q + V +D D +P+ +RGDP R+ Q
Sbjct: 1009 SKIESGRLELEQTDFALSSILDNACSMIADQARSKGVAIEVDPGD-VPKWLRGDPTRLRQ 1067
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
N + N+IKFT G I++R C +L ++ A
Sbjct: 1068 ALLNYVGNAIKFTDQGRILLR--C-------------------------RLVEKREYACL 1100
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
R FEV D+G GI S+ +F F Q D STTRKHGGTGLGL+I R L M
Sbjct: 1101 VR--------FEVSDSGIGIASSELPRLFSPFAQADVSTTRKHGGTGLGLAITRRLALLM 1152
Query: 663 GGEIKVVKKNSPGTLMQLYLLLG----ASSESK 691
GG+ V + G+ LG S+E+K
Sbjct: 1153 GGDAGVASEQGRGSTFWFTARLGLGHAVSAEAK 1185
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 932 QPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
+P N+ + + G R+LL ED + Q VA ++L V +V + +G +AVE +
Sbjct: 1185 KPSERDNADAVLRARYSGARLLLVEDNFINQEVALELLHAVSLSVDIAENGQEAVERVG- 1243
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
+ + L+LMD QMP MDG EAT IR + + H R P
Sbjct: 1244 ----------------------SGDYALVLMDVQMPVMDGLEATRRIRAAGT-HAGR--P 1278
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
I+A+TA+A + D + CL GM+ ++ KP++ + +++++ EA +
Sbjct: 1279 ILAMTANAFDEDRQACLRAGMDDFVPKPVEPSALYASLVKWLSQDAGEADAS 1330
>gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 898
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 159/294 (54%), Gaps = 41/294 (13%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS FLANMSHE+RTPM ++GL ++L+ +LT EQ + I+ S+ LL L+N I
Sbjct: 523 NQAKSDFLANMSHEIRTPMNGVVGLTQLLRFT-ELTTEQVEYLDSIETSADNLLSLINDI 581
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+ESGK+ELE T+F L+K +++++ + ++ +++ ++P V GD R
Sbjct: 582 LDLSKIESGKVELEFTDFSLRKAIQDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLR 641
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
V Q+F NL+ N+IKFT G I I A +
Sbjct: 642 VKQVFINLLGNAIKFTERGTITI----------------------------------AVS 667
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
+ RE N+ + V DTG G+ Q + +F+ F Q D STTR+ GGTGLGLSI R L
Sbjct: 668 ILE-RESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSICRKLA 726
Query: 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMER 713
MGG I V ++ PG+ +L L + + + A P++ V L+T+ ER
Sbjct: 727 ELMGGAITV--ESIPGSGSSFHLDLSFTCSTAK---AIQPDSKVQLSTIQKPER 775
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 904 PGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQI 963
PG SS DL T +++ QP S S+ QK L IL+AED L Q
Sbjct: 739 PGSGSSFHLDLSFT-------CSTAKAIQPDSKVQLSTIQKP-ERPLTILIAEDNQLNQR 790
Query: 964 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023
IL K+G +G +A+E R RS D +LMD
Sbjct: 791 TLEVILLKIGYQPVCTDNGQKALE-----------RWRS------------GGIDAVLMD 827
Query: 1024 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
QMP M+G EA +IR E+ ++ PI+ALTA A+ E+K + G + YLTKP+ +
Sbjct: 828 IQMPVMNGLEALEQIRTEEAI--GKHTPIIALTADALKDTEEKLIKAGFDGYLTKPVKIK 885
Query: 1084 RMVSTILRLT 1093
+ + RLT
Sbjct: 886 DLAGELARLT 895
>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
Length = 1221
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 155/294 (52%), Gaps = 34/294 (11%)
Query: 394 NGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD 452
G+ ++M+ ++ L+ AR +AE +N KS FLA MSHE+RTPM +IG++++L
Sbjct: 535 TGIMRDMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLDQT- 593
Query: 453 QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512
L+ Q I++S++ALL ++ ILD SK+E+G++E+E T L+K +E +
Sbjct: 594 SLSTYQREMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTH 653
Query: 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572
++ VE L + +P V GD R+ QI NLINN+IKF+S
Sbjct: 654 MAASKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFSSG--------------- 698
Query: 573 KNTAEFPTDRKKFGR-AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+ GR A R ++ + + + + F+V D G G+D + E +F
Sbjct: 699 ---------MSRLGRVAVRASPAEEVDG-------DVVTVMFQVIDNGIGMDDAARERLF 742
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
F QGD STTR+ GGTGLGL I R LV M GEI V K G++ + + G
Sbjct: 743 TPFSQGDASTTRRFGGTGLGLIICRRLVELMKGEISVESKPDVGSVFTVRIPFG 796
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + Q V + L +G +V +G EAL + + E
Sbjct: 969 ILVAEDNEINQKVIRQQLTLLGFAADIVVNGR---EALQKWKSGE--------------- 1010
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+ LIL D MP+MDGY+ T IR ++ G IPI+ALTA+A+ + ++C +G
Sbjct: 1011 -----YALILTDLHMPEMDGYQLTQSIRAEKT--GRYQIPIIALTANALKGEAERCRALG 1063
Query: 1072 MNAYLTKPIDSERMVSTI 1089
M+ YL+KP+ E++ S +
Sbjct: 1064 MDDYLSKPVQLEQLKSVL 1081
>gi|386727213|ref|YP_006193539.1| histidine kinase [Paenibacillus mucilaginosus K02]
gi|384094338|gb|AFH65774.1| histidine kinase [Paenibacillus mucilaginosus K02]
Length = 398
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 151/293 (51%), Gaps = 37/293 (12%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIG 443
G + I + + ++ L E L+ A+ +AE + KSQFLA MSHE+RTP+ +I
Sbjct: 122 GFVSIYLAHKKLQQQTDLLNERTRELERAKVQAEQAAMAKSQFLAVMSHEIRTPLNGVIA 181
Query: 444 LLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503
+ ++L+ D L EQ I++S ALL ++N ILDLSK+ESGKMEL+ +L+ L
Sbjct: 182 MADLLEETD-LNEEQREYTETIRRSGAALLYIINDILDLSKIESGKMELKEEAMNLRICL 240
Query: 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR 563
E ++MF + ++E D+ N+P + GD R+ QI NLI N++KFT G + +
Sbjct: 241 METIEMFHAESRAKSLEMTYDIDPNVPECILGDESRLRQILINLIGNAVKFTDQGGVHV- 299
Query: 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGID 623
CE RE +L L V DTG GI
Sbjct: 300 SVCE----------------------------------REREGQRLQLELRVADTGIGIP 325
Query: 624 QSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+ K +F+ F Q D S TR++GGTGLGL+I R LV+ MGG I + + G
Sbjct: 326 EEKRSLLFQPFSQVDSSMTRRYGGTGLGLAICRNLVHLMGGTIALGSSDHQGA 378
>gi|255576481|ref|XP_002529132.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223531411|gb|EEF33245.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 671
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 161/543 (29%), Positives = 262/543 (48%), Gaps = 65/543 (11%)
Query: 157 IKGNISAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQV---PDGVAS----WHVAV 209
+K I WY++ +DP TG+ G A+ L N + I + +G AS W+ A
Sbjct: 151 LKLPIKYTWYKQAVDPDTGKLYGNANESQVSFLANASWIQEALASGNGYASIGNGWNSAQ 210
Query: 210 S-KFTNSPLL--SAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTS 266
F NS + + +W P A++ A ++++ G +YL +
Sbjct: 211 DLMFLNSVTMLGQGVISLWFPVN------ALINFFNA-----------IDLYGGCLYLAT 253
Query: 267 QEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQN 326
G +LA P TG ++ ++ + N G Q S +P ++
Sbjct: 254 LSGNVLANGL--PNTQMVVTGKSVSFSLMNLN-----GDQIEHLGSFSCMPDNGMLRPSI 306
Query: 327 AKLGHKQYYMDTFFLNLKRLPIVGV-----IIIPREYIMGKADERAYKTLIILISASVCI 381
K+G +Y +L IVGV + P ++ D LI+L+ +
Sbjct: 307 LKIGDTEYMAYC-----SQLEIVGVQSVYALAFPYHKLVSSVDRSTKVALILLMVMIAAV 361
Query: 382 LVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
+L++ ++E+ L + LI ++A ++AE + KS A+ +H++R +A I
Sbjct: 362 FFSILSFVLLMVRAATREIHLCSALIKQMEATQQAERKSMNKSLAFASATHDIRAALAGI 421
Query: 442 IGLLEILKSDDQLTNEQYST-VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500
GL+EI S +++ Q T + Q+ L+ LLN +LD SK+E+GKM++E EFDL
Sbjct: 422 TGLIEI--SYGEVSPYQLQTNLQQMDDCVKDLVGLLNSVLDTSKIEAGKMQVELEEFDLA 479
Query: 501 KELEELVDMFSVQCSNHNVETVLDLSD-NIPR--NVRGDPGRVFQIFSNLINNSIKFTSS 557
LE++VD+F ++ +LD D +I + NV+GD G++ Q+ NL+ N++KFTS
Sbjct: 480 NLLEDVVDLFHAVGMKKGLDIILDPCDGSILKFSNVKGDRGKLKQVLCNLLGNAVKFTSE 539
Query: 558 GHIIIRGWC-----ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN----NAMNFREDNK 608
GH+ +R W EN+ + N P + K + K+ + N+M + N
Sbjct: 540 GHVSVRVWAQKASMENMIIASN----PKELWKLCSCWFMNHKEDHDVEIMNSMK-QNPNC 594
Query: 609 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+ FEVDDTG GI + K ++VFE+F Q T GGTGLGL IV++LV MGGEI +
Sbjct: 595 IEFMFEVDDTGIGIPKEKQKSVFENFVQ-VKETAFGQGGTGLGLGIVQSLVRLMGGEIGI 653
Query: 669 VKK 671
V K
Sbjct: 654 VDK 656
>gi|428316967|ref|YP_007114849.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428240647|gb|AFZ06433.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2171
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 157/289 (54%), Gaps = 34/289 (11%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
L +S K AEL DA AEA+N KS FLANMSHELRTP+ AI+G +++ D
Sbjct: 1650 LEQEISHRKKTEAELEQAKDA---AEAANKAKSTFLANMSHELRTPLNAILGFSQLMNQD 1706
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
L NEQ + I +S LL L+N++LDLSKVE+G+M L T F+L L E+ DMF+
Sbjct: 1707 TNLLNEQKENLNIIHRSGDHLLTLINQVLDLSKVEAGRMTLSETNFELHHFLGEIEDMFA 1766
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENL 569
++ + ++ + + ++P+ +R D ++ Q+ NLI N+IKFT SG + +++ +N
Sbjct: 1767 LKAKSQGLQLRFECAVDVPQYIRADEVKLRQLLINLIGNAIKFTPSGSVSLVVKKSQKN- 1825
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
+++ AE NN + + FEV DTG G+ + E
Sbjct: 1826 --AQSQAEIEI----------------TNNPQS------TTITFEVKDTGVGMKPDELEK 1861
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVV---KKNSPG 675
+F+ F Q S + GTGLGL+I R V MGGEI V+ K +PG
Sbjct: 1862 LFQPFVQ-TASGQKVQQGTGLGLTISRQFVRLMGGEITVISGGKAFTPG 1909
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D + + K+L+ +G V +G++A+E + S
Sbjct: 1962 RILVVDDKDDNRQLLVKLLKPLGFEVQEASNGIEALEIWD------------------SY 2003
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+P LI MD +MP +DGYEAT I+ + + ++ALTA ++ L
Sbjct: 2004 SPH-----LIWMDMRMPVIDGYEATKRIKTTIK---GQATAVIALTASVWEEEKAVILSA 2055
Query: 1071 GMNAYLTKPIDSE 1083
G + ++ KP E
Sbjct: 2056 GCDDFVRKPFHKE 2068
>gi|224125030|ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222857861|gb|EEE95408.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1001
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 197/363 (54%), Gaps = 13/363 (3%)
Query: 334 YYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILT 393
+Y T L++ L V V+ PR ++ + +L++L + I++ C + +
Sbjct: 221 FYCST--LDIAGLKSVYVLAYPRNGLVHLVHRNSMLSLLLLALVFIFIVISLCTYLFLTA 278
Query: 394 NGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
++EM L A LI +A ++AE + K++ A +H++R +AA+ + + +
Sbjct: 279 RATNREMFLCASLIKQTEATQQAERKSMNKTKAFAGANHDVRNSLAAVRASIHFCQEEAN 338
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
++ + + Q++ + LL +LN ILD+SK+E+GK LE +F+L + LEE+VDMF
Sbjct: 339 PESKLAAQLVQLENHTKDLLGILNSILDMSKIEAGKTSLEIEDFNLAELLEEVVDMFYPL 398
Query: 514 CSNHNVETVLDLSDNI---PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
N ++ VLD D NVRGD ++ QI NL+NN+IKFTS GH+ IR + +
Sbjct: 399 GMNKGIDIVLDPCDGSTLKSANVRGDRLKLKQILCNLVNNAIKFTSEGHVSIRTVVKKKN 458
Query: 571 TSKN-TAEFPTDRKKFGRAFRTKLKQQAN--NAMNFRED--NKLALCFEVDDTGCGIDQS 625
K A T KF F K + N +A+N E+ N++ FEVDDTG GI +
Sbjct: 459 FRKEIIASNRTTVMKFLSRFCYKNQDSFNDLDALNTVEENPNEVEFEFEVDDTGKGIPKD 518
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK--NSPGTLMQLYLL 683
K +++FE + Q + T + GTGLGL IV++LV M GE+++V+K GT + +
Sbjct: 519 KQKSLFEDYVQVKETATGQE-GTGLGLGIVQSLVRVMKGELRIVEKELGERGTCFKFNVF 577
Query: 684 LGA 686
L +
Sbjct: 578 LSS 580
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 10/146 (6%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G +L+ ED+ L+Q + +L+K+GA+V V +G +A + +++ L+ + +G
Sbjct: 863 LNGKNVLVVEDSMLLQRLTSSVLKKLGASVEVCTNGKEAFDEVSKSLSDQKK------EG 916
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P +D+I MDC+MP M+G+EAT IR E ++ +IPI+ALTAHAM K
Sbjct: 917 DSISLP----YDIIFMDCEMPVMNGFEATRLIRMEEEQYSGVHIPIIALTAHAMPEQTSK 972
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL 1092
GM+ +LTKP++ +M+ IL +
Sbjct: 973 VFDAGMDFHLTKPLEERKMLEVILSI 998
>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 7894]
Length = 927
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 416 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 469
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 470 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 528
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ QI SNLI N+IKFT GHI I
Sbjct: 529 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISI---- 584
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 585 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 613
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 614 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|365097211|ref|ZP_09331456.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363413505|gb|EHL20701.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1631
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 143/258 (55%), Gaps = 38/258 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A+ AE S KS FLANMSHE+RTPM AIIG+ + LKS L++ Q+ V +I+++
Sbjct: 862 AKELAEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSG--LSDRQHDYVSKIQQAGQ 919
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+GK+ +E F L L+ + D+ + +E V D++ ++P
Sbjct: 920 HLLGVINDILDFSKIEAGKLVVEKHPFALDHMLDSVADVVGYKAGAKGLELVCDVAPDVP 979
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
N+ GD R+ QI N NN+IKFT G I I
Sbjct: 980 PNLIGDSLRMGQILINFANNAIKFTERGEISIA--------------------------- 1012
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L + E +++ L FEV DTG G+ + +F+SF+Q D STTR++GGTGL
Sbjct: 1013 VRLMES--------EGSRVLLRFEVRDTGIGLTPEQMGRLFQSFQQADTSTTRRYGGTGL 1064
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I ++L MGGE+ V
Sbjct: 1065 GLAICKSLAELMGGEVGV 1082
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 26/152 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
+ G +LL ED L Q+VA ++L G V V +G A++ + R
Sbjct: 1262 IRGASVLLVEDNELNQMVAVELLRDAGFAVDVAENGEAAIDCIERKA------------- 1308
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+D++LMD QMP MDG AT +R S H +PIVA+TA+AM AD ++
Sbjct: 1309 ----------YDVVLMDMQMPVMDGETATRRLR-SNPRHA--QLPIVAMTANAMEADRQR 1355
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
C GMN ++ KPI+ + + + R + P
Sbjct: 1356 CFAAGMNDHVAKPIEPAALWAALGRWIRPRPG 1387
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D V +L +G V GL EAL+R+ R S+ +
Sbjct: 1113 LRGRRVLVVDDNQTAATVLSDMLTSMGFDVEQAHSGL---EALDRL-------RESMARH 1162
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEK 1065
P F L+L+D MP MDG + I+ G +P ++ +TA+ +
Sbjct: 1163 QP--------FGLLLLDWHMPGMDGIQLAGHIKGL----GMAQVPKMLMVTAYGREDVMR 1210
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
G++ L KP+++ + T+++ ++ P+
Sbjct: 1211 AARLQGIDTVLIKPVNASLLFDTLMQPLEHAPA 1243
>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
Length = 661
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 172/341 (50%), Gaps = 51/341 (14%)
Query: 383 VIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAII 442
+IGC+ + T +E +++ L+S A+ +AE ++ KS+FLA+MSHE+RTP+ I+
Sbjct: 138 IIGCVFVFRDT---IREREIQRNLLS---AKEEAERASQAKSEFLASMSHEIRTPLTTIL 191
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G+ ++L L EQ V + + LL L+N ILDLSK+E+GK+E+E EFDL
Sbjct: 192 GMADLLDKT-PLGAEQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHL 250
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
L + ++ +++ +E LS V GD R+ QI NLI N+IKFT G + +
Sbjct: 251 LRQTCEIMALRAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERGKVTV 310
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
A R ++ A N F V DTG GI
Sbjct: 311 E------------------------AVRWPAEESAENTW---------FGFVVSDTGIGI 337
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
K E VFE F Q D ST+R++GGTGLGL+I R LV MGG I++ + G+ + +
Sbjct: 338 PPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTIRLASREGEGSRFTVEI 397
Query: 683 -------LLGASSESKQIYDADFPNTVVVLATVGSMERMII 716
+LGAS ++ Q + P L T G+ R ++
Sbjct: 398 PLPWRGAILGASGKTSQ--EGALP--AAGLPTAGAATRRLL 434
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LLAED P +++ L+ + + +G +AV QG
Sbjct: 432 RLLLAEDAPENRLLFKAYLKGTPYLLDLAVNGEEAVVKFK--------------QG---- 473
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+L+D QMP MDGY A +R E+E G IPIVALTAHA D +K
Sbjct: 474 -----HYDLVLLDIQMPGMDGYAAARAMRAWEAEQGREAIPIVALTAHAFRDDIRKSREA 528
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + ++ KPI + + TI
Sbjct: 529 GCDGHMVKPIKMDDFLRTI 547
>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 719
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 39/303 (12%)
Query: 385 GCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
G + +L + +++ + EL +AR AE ++ KS+FLANMSHE+RTP++AIIG+
Sbjct: 312 GALGVLAVGQDITERKRSEVELC---EARDAAEEASRAKSEFLANMSHEIRTPISAIIGM 368
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
E + + LT EQ + +KK++ +LL ++N ILD+SK+E+ KMEL +F+L + LE
Sbjct: 369 SE-MTLNTNLTGEQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLE 427
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
+ + + VQ +E ++SD++ R GD R+ QI NL+ N+IKFT G++ +
Sbjct: 428 KQLSVLKVQAEEKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEKGYVEV-- 485
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
++ +F E L F V DTG GI +
Sbjct: 486 -------------------------------SVDHVGSFEEG--AVLEFRVKDTGIGISE 512
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
K E +FESF Q + +++H G+GLGL+I R LV MGG I + G+ + + L
Sbjct: 513 DKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFSSREGWGSEFKFTVRL 572
Query: 685 GAS 687
+S
Sbjct: 573 KSS 575
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 27/143 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RILLAED Q+ L + G V +GL+A++ L+
Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLD-------------------- 638
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
++ FD+ILMD QMP+MDG EAT +IR+ +E IPI+ALTA+AM D +K L
Sbjct: 639 --NSGPFDVILMDVQMPEMDGLEATKKIREQGNE-----IPIIALTAYAMEGDREKFLSN 691
Query: 1071 GMNAYLTKPIDSERMVSTILRLT 1093
GM+AY +KP++ + +V I +L
Sbjct: 692 GMDAYSSKPVNIDELVQIIGKLV 714
>gi|418703081|ref|ZP_13263972.1| GHKL domain protein [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418712068|ref|ZP_13272814.1| GHKL domain protein [Leptospira interrogans str. UI 08452]
gi|421116195|ref|ZP_15576583.1| GHKL domain protein [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410012199|gb|EKO70302.1| GHKL domain protein [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410767315|gb|EKR37991.1| GHKL domain protein [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410791472|gb|EKR85147.1| GHKL domain protein [Leptospira interrogans str. UI 08452]
Length = 841
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSELVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|428307527|ref|YP_007144352.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428249062|gb|AFZ14842.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 865
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 175/341 (51%), Gaps = 33/341 (9%)
Query: 399 EMKLRAE--LISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
E++L A+ + + L R A + KS+FLA MSHE+RTPM +IG+ E++ + +LT+
Sbjct: 160 ELRLAAKKAVETELALREAALEATRAKSEFLATMSHEIRTPMNGVIGMTELML-NTKLTS 218
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
+Q V I+ S ALL ++N ILD SK+ES K+ELE F++ LEE +D+ + + +
Sbjct: 219 QQQHFVETIRHSGEALLTIINDILDFSKIESQKLELEKQPFNILNCLEESLDILAPKAAE 278
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
N+E + N P+ + GD R+ QI NL++N++KFT G +++ L +N
Sbjct: 279 KNLELAYIIQPNTPKKLIGDVTRLRQIIINLLSNAVKFTKDGEVLVSITSHQLPAGENIE 338
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
+ P LK N L F V DTG GI + + +F+SF Q
Sbjct: 339 QNP------------HLK------------NCYELQFAVKDTGIGIPTERMDRLFQSFSQ 374
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
D STTR++GGTGLGL+I + L MGG + V G++ Y + A S + D
Sbjct: 375 VDSSTTREYGGTGLGLAISKRLTELMGGRMWVESTVGQGSI--FYFTIIAPS----VADG 428
Query: 697 DFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLT 737
++ + + +I+ +++ L+ W LT
Sbjct: 429 SLAQENIIPPQLVGKQLLIVDDNATNREILMLQGQSWGMLT 469
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 27/132 (20%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA LE++G V +GL+ +EAL R
Sbjct: 590 LRILLAEDNSVNQQVALYFLEQIGYLADVAANGLEVLEALQRQ----------------- 632
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMP MDG T R+ +E+ P I+A+TA+ M D+++CL
Sbjct: 633 ------AYDVVLMDVQMPVMDGLATT---RQINAEYAPTARPRIIAMTANTMQGDKEECL 683
Query: 1069 GVGMNAYLTKPI 1080
GM+ Y++KPI
Sbjct: 684 QAGMDDYISKPI 695
>gi|418708645|ref|ZP_13269446.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410770978|gb|EKR46190.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 841
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 785
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 142/271 (52%), Gaps = 41/271 (15%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
++ KL AE AR AE ++ KSQFLANMSHELRTPM AI+G+L++L+ +LT++
Sbjct: 243 EQAKLAAE-----KARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGT-ELTDK 296
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q S ++ +LL LLN ILD SKVE+GKM L+ F + L +L + S
Sbjct: 297 QRSYTHNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVGAK 356
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
+E + D+ ++P + GD R+ Q+ NL N++KFT G ++IR
Sbjct: 357 TIEVLFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIR-------------- 402
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
R K N A F E F V DTG GI +F F Q
Sbjct: 403 -----------LRLK---ATNGAKAFVE-------FAVSDTGIGIASENQAHIFSGFSQA 441
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+ STTR+ GGTGLGL+I + LV MGG ++V
Sbjct: 442 EASTTRRFGGTGLGLAICQRLVGLMGGTLEV 472
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 936 SSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAA 995
++ + N+ + L+G+R+L+ ED + Q+VA +L++ GA V++ +G AVE L
Sbjct: 647 AAPQAVNKPKRLDGMRLLVVEDNKINQLVAKGLLKQEGAEVTLADNGQLAVELL------ 700
Query: 996 ESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055
+ PD F+ +LMD QMP MDGYEAT +R N+P++A+
Sbjct: 701 -------------TAQPDA--FEAVLMDVQMPVMDGYEATRALRTMPV---FANLPVIAM 742
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
TA+AM +D + CL GMN ++ KP + + +V T+L T
Sbjct: 743 TANAMASDREACLAAGMNDHVGKPFEIDHLVRTLLHFT 780
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q+ L + L+ +D P+ + + + +G V V G QA+E R+ AA+S
Sbjct: 503 QRHPLAAQKALVVDDNPVARALLATMTRSLGWDVDVAEGGPQALE---RVQAAQSG---- 555
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM-- 1060
G P + +I MD +MP DG+E T IR + G I +V+ AM
Sbjct: 556 ---GKP--------YQVIFMDWRMPDWDGWETTRRIRAA-MPGGDTLILMVSANGRAMMA 603
Query: 1061 --NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102
ADE+ L N +L KP+ + ++ ++ ATG
Sbjct: 604 ERTADEQALL----NGFLVKPVTASMLLDAVMDAQAASAKAATG 643
>gi|417766462|ref|ZP_12414414.1| GHKL domain protein [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417787087|ref|ZP_12434772.1| GHKL domain protein [Leptospira interrogans str. C10069]
gi|418725424|ref|ZP_13284042.1| GHKL domain protein [Leptospira interrogans str. UI 12621]
gi|400351289|gb|EJP03529.1| GHKL domain protein [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|409949939|gb|EKO04472.1| GHKL domain protein [Leptospira interrogans str. C10069]
gi|409961061|gb|EKO24808.1| GHKL domain protein [Leptospira interrogans str. UI 12621]
Length = 841
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|418690838|ref|ZP_13251945.1| GHKL domain protein [Leptospira interrogans str. FPW2026]
gi|400359874|gb|EJP15855.1| GHKL domain protein [Leptospira interrogans str. FPW2026]
Length = 841
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|418731799|ref|ZP_13290074.1| GHKL domain protein [Leptospira interrogans str. UI 12758]
gi|410773793|gb|EKR53819.1| GHKL domain protein [Leptospira interrogans str. UI 12758]
Length = 841
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSELVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|294653541|ref|NP_714785.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
str. 56601]
gi|386076228|ref|YP_005990417.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
str. IPAV]
gi|293630747|gb|AAN51800.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai
str. 56601]
gi|353459890|gb|AER04434.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
str. IPAV]
gi|456825892|gb|EMF74270.1| GHKL domain protein [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 841
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|421128300|ref|ZP_15588515.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421132976|ref|ZP_15593134.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022893|gb|EKO89660.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434025|gb|EKP83166.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 841
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E ++++ L AR AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 447 EFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQ 505
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q +
Sbjct: 506 QHIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKG 565
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ +D S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 566 LVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------- 618
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
K+ +V D+G GI + K + +F+ F Q D
Sbjct: 619 -----------------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLD 649
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQ 692
S +RK+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +
Sbjct: 650 SSISRKYGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPE 709
Query: 693 IYDAD--FPNTVVVLATVGSMERMIISQWLRKKKV 725
I D P+T +++A S ++S L+K K+
Sbjct: 710 ITDLSSLSPDTFILIAEDDSTNIFLLSGILKKLKI 744
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 722 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 760
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 761 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 816
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 817 MSDFLGKPYYKKDIEQMI 834
>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
Length = 856
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 136/253 (53%), Gaps = 34/253 (13%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
K++FLA MSHE+RTPM +IGL ++L +D LT+ Q ++ I+ S LL ++N ILD
Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLADGGLTHRQRDSIETIRASGETLLTIINDILDF 543
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK ESG +ELE FDL L VD+ + + +++ L +P+ V GD R+ Q
Sbjct: 544 SKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARLRQ 603
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NLI N++KFT+SG + + N+ ++ AE P
Sbjct: 604 ILVNLIGNAVKFTTSGAVSV-----NVTAARPAAEPP----------------------- 635
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
K L F V DTG GI + + +F+ F Q D STTR++GGTGLGL+I + L M
Sbjct: 636 ----QKWELHFAVRDTGIGIPAERMDRLFKPFSQVDASTTRRYGGTGLGLAICKRLAELM 691
Query: 663 GGEIKVVKKNSPG 675
G I V ++ PG
Sbjct: 692 DGRIWV--ESEPG 702
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 27/132 (20%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED PL Q VA ++L ++G +V DG + + AL R
Sbjct: 736 LRILLAEDNPLNQKVALQLLRRLGYRANVATDGEEVLRALRRQ----------------- 778
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
R+DL+LMD QMP +DG EAT R+ SE A P I+ALTA A DE+ CL
Sbjct: 779 ------RYDLVLMDVQMPMIDGLEAT---RRIASEFAAAERPRIIALTAGATLQDEQACL 829
Query: 1069 GVGMNAYLTKPI 1080
GM+ +++KPI
Sbjct: 830 RAGMDGFISKPI 841
>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 663
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 215/468 (45%), Gaps = 68/468 (14%)
Query: 399 EMKLRAELISHL-----DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
E++L A + L +A+ KAE +N KS FLANMSHELR+P+ AI+G +I+
Sbjct: 160 ELRLAARKVDELNAELAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSKT 219
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L +E V I +S LL L+N +LDLSK+E+G L FDL + L++L DMF ++
Sbjct: 220 LPSEHIENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLK 279
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ ++ + + S ++PR VR D ++ QI NL+NN++KFT G + +R +
Sbjct: 280 ADDRRLQLIFERSPDVPRYVRTDEVKLRQILINLLNNALKFTQVGGVSVRVVTDGGSLVT 339
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
TA KQ + E K L FEV+D+G GI + +++FE
Sbjct: 340 GTAT----------------KQITD------ESEKTMLRFEVEDSGPGIAPEELDSLFEV 377
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT----LMQLYLLLGASSE 689
F Q + GTGLGL I R V MGGEI V + GT +Q+ ++ + E
Sbjct: 378 FVQTQ-TGKEAQEGTGLGLPISRKFVQLMGGEIAVSSEVGSGTNFKFNIQVNVVDASEIE 436
Query: 690 SKQI------YDADFPNTVVVLATVGSMERMIISQWLR------------KKKVSTLETS 731
SKQ+ + + P +++ + R ++ Q L K+ V ++
Sbjct: 437 SKQLARRAIALEPNQPQYRILIVDDKPLNRQLLIQLLNPFGFALKEAMDGKEAVEIADSW 496
Query: 732 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDL 791
E H + +R PV +G++A + K + T I AL V + L
Sbjct: 497 EPHLIWMDMR------MPV-MDGYEATKQIKGSTKGQATAIIALTASVLEEERAVILSAG 549
Query: 792 SSDLWREQLNSLDIF-----HRKAMF------AWVVNHQTTSPIKTEL 828
D R+ DIF H F A HQ+ S + EL
Sbjct: 550 CDDFMRKPFREADIFTAIEKHIGVRFIYEEATAKSFAHQSNSQTQDEL 597
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D PL + + ++L G + DG +AVE
Sbjct: 455 RILIVDDKPLNRQLLIQLLNPFGFALKEAMDGKEAVE----------------------- 491
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D+ LI MD +MP MDGYEAT +I+ S + I+ALTA + + L
Sbjct: 492 IADSWEPHLIWMDMRMPVMDGYEATKQIKGSTK---GQATAIIALTASVLEEERAVILSA 548
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + ++ KP + + I
Sbjct: 549 GCDDFMRKPFREADIFTAI 567
>gi|371775823|ref|ZP_09482145.1| putative two-component system sensor protein [Anaerophaga sp. HS1]
Length = 1446
Score = 165 bits (417), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 144/254 (56%), Gaps = 36/254 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLA MSHE+RTP+ AIIG + D T Q + +I+ SS +LL ++N ILD
Sbjct: 793 KSDFLARMSHEIRTPLNAIIGWTHLALEKDN-TQGQTEYLKRIQSSSRSLLGIINDILDF 851
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G++ELE +FDL++ L+ L DM + + N+E V D++ ++P ++ GDP R+ Q
Sbjct: 852 SKIEAGRLELEYIDFDLEQVLQNLADMVLFRVNEKNLELVFDIAPDVPLSLVGDPLRLEQ 911
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ NL+NN++KFT G++ ++ ++L
Sbjct: 912 VLVNLVNNAVKFTDKGYVSVKIEVKSL--------------------------------- 938
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+ K L F ++DTG G+ + + +F++F Q D STTRK+GG+GLGL+I + L + M
Sbjct: 939 --KGEKAELLFAIEDTGIGLKEEQKNNLFKAFSQADVSTTRKYGGSGLGLAICKRLTHMM 996
Query: 663 GGEIKVVKKNSPGT 676
GEI V + G+
Sbjct: 997 DGEIWVESEYGKGS 1010
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+L+ ED + + ++L T V +G +A++ N S
Sbjct: 1187 LRLLMVEDNETNRQLTVELLSMANITTDVATNGQEALDLAN---------------NSNG 1231
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
P +D+ILMD MP M+GY AT +++ E G + +P+VA+TA A+ E +CL
Sbjct: 1232 HCP----YDVILMDIHMPGMNGYTATRRLKRIE---GWKEVPVVAMTAEALGDVEAQCLQ 1284
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM + KPID + + I R+ P
Sbjct: 1285 AGMAGLVGKPIDPDDLFRVIFRVVFGEP 1312
>gi|427725002|ref|YP_007072279.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
gi|427356722|gb|AFY39445.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
Length = 905
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 154/276 (55%), Gaps = 25/276 (9%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
K+R+++ A+ KAE +N KS FLANMSHELRTP+ AI+G ++++ D LT EQ +
Sbjct: 353 KIRSQITVIQKAQEKAEIANQAKSSFLANMSHELRTPLNAILGFTQVMQHHDSLTTEQNN 412
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
+ I +S LL L+N +LD+SK+E+GK L F+L K LE L M + + ++
Sbjct: 413 HLNIINQSGEHLLALINDVLDMSKIEAGKSTLNKDSFNLPKLLETLEAMLKFKAESKGLD 472
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
V+D + ++PR +R D ++ Q+ NL+ N++KFT G + ++ + + + E P
Sbjct: 473 LVIDCAPDVPRWIRTDQQKLRQVLINLLGNALKFTQDGQVQLQ-----VTQTNASEENPE 527
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
R + A L FEV D+G GI + + +F+SF QG+
Sbjct: 528 SRLEATSALSQ------------------VLTFEVIDSGPGITPEELQHLFDSFSQGEHG 569
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
++ GGTGLG++I ++ V MGG+I+V + GT
Sbjct: 570 --KQQGGTGLGMAISQSFVQLMGGKIRVESQLGQGT 603
>gi|388259239|ref|ZP_10136413.1| multi-sensor hybrid histidine kinase [Cellvibrio sp. BR]
gi|387937197|gb|EIK43754.1| multi-sensor hybrid histidine kinase [Cellvibrio sp. BR]
Length = 971
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 184/356 (51%), Gaps = 48/356 (13%)
Query: 392 LTNGVSKEMKLRA-ELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
+T E +L+ + I H A++ AE +N KS FLA MSHE+RTP++ +IG++++L
Sbjct: 278 ITQAKQAEQELKQLDAIKH--AQQVAELANQAKSSFLATMSHEIRTPISGVIGMVDVLHQ 335
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
L Q V I+ S+ +LL +++ ILD SK+ESG++ELE F L+ +E++ +
Sbjct: 336 T-SLKGYQIEMVDIIRDSANSLLSIIDDILDFSKIESGRLELEAVPFSLEHSIEKVCSLL 394
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ NVE L + N+P + GD R+ QI NL+NN+IKF+S
Sbjct: 395 DRMALDKNVELSLFIDSNLPETLVGDELRLRQILINLVNNAIKFSSGA------------ 442
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
+ FG+ R + A NA ++ + F + D G G+ + +
Sbjct: 443 ------------EPFGKV-RLSVSVHAKNA------GEMVIEFAISDNGIGMSEQTLGRL 483
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL--LLGASS 688
F F Q D STTR +GGTGLGL+I R LV M GEI V + + G++ ++ + L+ A++
Sbjct: 484 FSPFMQADASTTRHYGGTGLGLTITRHLVELMQGEIVVESRLNIGSVFRVRIPFLMNAAT 543
Query: 689 ESKQIYDADFPNTVVVLA-TVGSMERM--IISQWLRKK-----KVSTLETSEWHGL 736
+ A+ PN ++L VG + + I Q+L V+ +E EWH L
Sbjct: 544 ---GVTPANNPNFSLLLCIVVGDLSGLSAIWGQYLSASGAVVIPVAAVELIEWHEL 596
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 25/128 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+LLAED Q V + L +G V VV +G EA +R+ A
Sbjct: 708 LLLAEDNETNQKVITRQLALLGYAVDVVSNG---EEAFDRLTA----------------- 747
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+ L++ D MP MDGY ++R + IPI+AL+A+A+ + KC +G
Sbjct: 748 ---ERYALLITDIHMPVMDGYRLIAKVRAAN--RAFNKIPIIALSANALREEVDKCKQLG 802
Query: 1072 MNAYLTKP 1079
N YL KP
Sbjct: 803 ANEYLVKP 810
>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei 91]
Length = 927
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 416 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 469
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 470 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 528
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 529 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 584
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 585 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 613
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 614 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BCC215]
Length = 927
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 416 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 469
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 470 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 528
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 529 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 584
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 585 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 613
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 614 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|406879817|gb|EKD28312.1| hypothetical protein ACD_79C00343G0002 [uncultured bacterium]
Length = 652
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 36/314 (11%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
KAE++N KS+FLANMSHE+RTPM IIG++ L D +L+ +Q + +K+ + +L+
Sbjct: 267 KAESANKAKSEFLANMSHEIRTPMNGIIGMIG-LTLDTELSAQQRENLETVKQCADSLMN 325
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N ILDLSK+E+GK+EL+ F++ ++ + + +VQ + V+D+ +P N+
Sbjct: 326 LINSILDLSKIEAGKLELKYDVFNINNTIDGIFKILNVQVALKGNTFVIDVHPEVPSNLI 385
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GD R+ Q+ NL+ N+IKFT G + NL + + +D +K
Sbjct: 386 GDELRIRQVLVNLLGNAIKFTEEGQV-------NLSVGIQSKQNKSDEY---------IK 429
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ + L F++ D+G GI + K T+F+SF Q D S+ R++ GTGLGL+I
Sbjct: 430 E-------------VELYFKISDSGIGIPEDKIHTIFDSFTQVDGSSKRRYAGTGLGLTI 476
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDAD---FPNT---VVVLATV 708
+ L+N MGGEI V + G+ L +++K AD PNT V+LA
Sbjct: 477 SKKLINMMGGEIGVESQLGNGSTFYFTLKFKLPAKNKIQRTADQINSPNTRPLKVLLAED 536
Query: 709 GSMERMIISQWLRK 722
+ R I L K
Sbjct: 537 NLINRKIAVAILNK 550
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++LLAED + + +A IL K G V +G + +E L R
Sbjct: 529 LKVLLAEDNLINRKIAVAILNKYGYKVETAVNGQEVIEFLKR------------------ 570
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+FD+ILMD QMP MDG EAT+ IR S + IPI+ALTAHA D+ K +
Sbjct: 571 -----EKFDVILMDVQMPVMDGLEATLIIRNSNEKLLDSQIPIIALTAHAFEEDKAKFIK 625
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTK 1094
GMN++++KP + E++V I R+ K
Sbjct: 626 AGMNSFISKPFNKEQLVHEIERVVK 650
>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei DM98]
Length = 927
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 416 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 469
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 470 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 528
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 529 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 584
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 585 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 613
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 614 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|383791538|ref|YP_005476112.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383108072|gb|AFG38405.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 866
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 188/345 (54%), Gaps = 30/345 (8%)
Query: 339 FFLNLKRLPIVGVI--------IIPREYIMGKADERAYKTLIILISASVCILVIGCICIL 390
FFL + I+GV+ I+P + ++ + L S + I ++ +
Sbjct: 379 FFLLTYGILILGVLLHSLRALGILPYSLLTAHGNQFGFA----LSSVVLSIGLVRSVHAT 434
Query: 391 ILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
+ + +RA+ ++A+++AEA++ KS+FLANMSHE+RTP+ +IG E+L+
Sbjct: 435 LEARVAQRTSTIRAQQAELIEAKQQAEAASIAKSEFLANMSHEIRTPLQGVIGFTELLE- 493
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
+ L +Q + S+++L+ ++ ILD SK+E+G++EL+ + D+ + + + V M
Sbjct: 494 NTPLNEKQQKFLQHASLSAHSLMEVITDILDFSKIEAGRLELDPVQIDVIEVVRQSVGMM 553
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
++ + ++ L+L D++P DP R+ Q+ NL++N+IKFT G + +R E+
Sbjct: 554 QMRAAQEGLDLQLELQDDMPAVATIDPVRLRQVVVNLLSNAIKFTEQGSVRVRMSWES-- 611
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
RK A ++ ++ + E + EV+DTG GI +++ + +
Sbjct: 612 -----------RKGDTAAAQSTASMHDQSSGSAPEPGRY--WIEVEDTGIGIPEAQRDKL 658
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
F++F Q D STTR++GGTGLGL I + KMGG I++ +++PG
Sbjct: 659 FKAFSQADSSTTRRYGGTGLGLVISNHIAEKMGGRIRL--ESTPG 701
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 21/134 (15%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED P +++ +I+ ++ T + EA + AE+ R
Sbjct: 739 ILIAEDDPHNRVIIREIVHRILPTARLY-------EAQD---GAEACR-----------I 777
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+T L+ MD MP+MDG AT IR++E+E ++PIVALTA +CL G
Sbjct: 778 AETLELQLVFMDMLMPEMDGIAATRCIREAEAEFDRPHVPIVALTARVQKEVRDQCLAAG 837
Query: 1072 MNAYLTKPIDSERM 1085
M+ +L+KPI +E++
Sbjct: 838 MDDFLSKPIRAEQV 851
>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
Length = 923
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 412 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 465
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 466 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 524
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 525 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 580
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 581 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 609
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 610 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 667
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 695 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 737
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 738 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 786
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 787 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 816
>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
Length = 735
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 140/244 (57%), Gaps = 36/244 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS+FLANMSHE+RTPM AIIGL + L + +L +Q S + +++ +S ALL ++N ILD
Sbjct: 356 KSEFLANMSHEIRTPMNAIIGLAQ-LTLETRLDPQQKSYLERLRNASTALLSIINDILDF 414
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+ K+E+ + E +L L++ V +F ++ L+++D+IP+++ GDP R+ Q
Sbjct: 415 SKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDPLRLGQ 474
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ +NLI+N++KFT G + +R +
Sbjct: 475 VLNNLISNAVKFTERGSVTVRAELAD---------------------------------- 500
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
R+D ++ + V DTG GID+ + E +F+ F Q D S R+ GGTGLGLSI R LV M
Sbjct: 501 -RDDQQVIIRILVSDTGIGIDKEQSERLFQPFTQADGSIVRRFGGTGLGLSIARNLVELM 559
Query: 663 GGEI 666
GG I
Sbjct: 560 GGSI 563
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 901 SICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPL 960
S CP + S+ F R + ++ QP ++ + G RILL ED +
Sbjct: 566 SSCPDQGST-------FAFTTRLDLAATVPSQPDQPQHTPYEIAGPIHGARILLVEDNEV 618
Query: 961 IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020
Q VA + L K G V+ G + VE + + FD +
Sbjct: 619 NQFVAREFLTKAGLKVTCAAHGGEGVEWIKNSV-----------------------FDAV 655
Query: 1021 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
LMD QMP MDG +AT IRK + R +PI+A+TA AM AD + CL GM+ YL+KPI
Sbjct: 656 LMDMQMPVMDGVQATQLIRKLPA---GRQLPIIAMTAAAMEADRQTCLDAGMDDYLSKPI 712
>gi|343502495|ref|ZP_08740346.1| signal transduction histidine kinase [Vibrio tubiashii ATCC 19109]
gi|342814362|gb|EGU49307.1| signal transduction histidine kinase [Vibrio tubiashii ATCC 19109]
Length = 1086
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 152/276 (55%), Gaps = 41/276 (14%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
++KE K +A L + A+A+N KS FLANMSHE+RTPM ++G+L +L S+ +L
Sbjct: 410 ITKEKKAQASLQQESEI---AQAANEAKSMFLANMSHEIRTPMNGVVGMLSLL-SEGELD 465
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+EQ + V IK S+ LL ++N ILD SK+E+G+M LE+ +LQ LE +D+ +Q +
Sbjct: 466 SEQRAMVSTIKDSALTLLHIINDILDFSKIEAGQMRLESAPVELQNLLERSLDVLYLQAN 525
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTSKN 574
N ++ L N+P+ + D R+ QI NL+ N++KFT S+ + + W
Sbjct: 526 NKGIDMYLTYDPNLPKVIMSDSVRISQIMLNLVGNAVKFTDSTSEVKGKVWV-------- 577
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFE--VDDTGCGIDQSKWETVFE 632
G N +A C + V+D G G+ + + E +F+
Sbjct: 578 -------SASLGS-------------------NGIAPCIDLMVEDNGIGMTEEQQENLFK 611
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+F Q D STTR +GGTGLGLSI +L++ MGG I V
Sbjct: 612 AFTQADTSTTRLYGGTGLGLSITHSLLDLMGGSINV 647
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSE-SEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDLIL DC MP MDGYE T +IR+ E + +IPI+A+TA+AM ++C+ GM+ Y
Sbjct: 869 FDLILTDCHMPVMDGYELTSQIRQMERDDKDLGHIPIIAITANAMKEASEQCMTCGMDDY 928
Query: 1076 LTKPIDSERMVSTILR 1091
LTKP++ +++ ++I++
Sbjct: 929 LTKPVELKKLNASIIK 944
>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
1710b]
gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
1710b]
Length = 988
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 477 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 530
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 531 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 589
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 590 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 645
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 646 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 674
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 675 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 732
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 760 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 802
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 803 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 851
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 852 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 881
>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei B7210]
Length = 988
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 477 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 530
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 531 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 589
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 590 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 645
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 646 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 674
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 675 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 732
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 760 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 802
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 803 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 851
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 852 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 881
>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei 14]
Length = 927
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 416 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 469
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 470 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 528
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 529 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 584
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 585 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 613
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 614 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei NCTC 13177]
Length = 922
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 411 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 464
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 465 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 523
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 524 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 579
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 580 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 608
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 609 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 666
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 694 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 736
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 737 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 785
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 786 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 815
>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
Length = 927
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 150/286 (52%), Gaps = 43/286 (15%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E+KL+ +AR A+ +N KS FLA MSHE+RTP+ AIIG LE+L+ L+ +Q
Sbjct: 429 ELKLK-------EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS-PLSEQQ 480
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E VD ++ +
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 540
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 541 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---------------- 584
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
R K R + A+ V+DTG GI + T+F+ + Q D
Sbjct: 585 DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDRIATLFDVYTQAD 625
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 626 ASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 671
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 699 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 741
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 742 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 790
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 791 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 820
>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
Length = 1823
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1357 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFAETIHGAGSDLLQLI 1416
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKVE+GKM++ T L +LVD E LDLS +P
Sbjct: 1417 NDILDLSKVEAGKMDVSPTRI----ALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPAT 1472
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG ++IR GR
Sbjct: 1473 LHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIR--------------------PAGRDVP 1512
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++Q A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGL
Sbjct: 1513 VAIREQLLEAGSLRDPDADLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGL 1572
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
GLSI R + +GGEI + G+ LYL L S Q Y P
Sbjct: 1573 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGYQQSMP 1621
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1749 VVLMDIMMPEMDGYATTSAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTK 1805
Query: 1079 PIDSERMVSTI 1089
P+D + ++S +
Sbjct: 1806 PVDPDHLLSVM 1816
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 156/285 (54%), Gaps = 26/285 (9%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A R+A ++ KS+FLANMSHE+RTPM AI+G+ E L + +LT EQ + I+ SS
Sbjct: 537 EAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTE-LAGNTELTPEQKEYLSIIQNSSE 595
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL LLN ILD SK+E+GK++LE +F L++ + V ++ VE V+ + ++
Sbjct: 596 SLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVEPDME 655
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+GDP R+ Q+ NL+ N+IKFT G + ++ AE
Sbjct: 656 DGFKGDPDRLRQVLVNLVGNAIKFTQQGEV-------QVEVRLAAAE------------- 695
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ Q A + +KL + F V DTG GI K E +FE+F Q D S+ RK+GGTGL
Sbjct: 696 -EMLQHAARDEGYL--SKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSRRKYGGTGL 752
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL--GASSESKQI 693
GLSI LV M G I + + G+ L L G ++ +Q+
Sbjct: 753 GLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLPLEPGEDAQKEQV 797
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 75/134 (55%), Gaps = 23/134 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L L+ILLAED + Q++A +IL + G V V DG +AV+AL R
Sbjct: 951 LRPLKILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALAR--------------- 995
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDL+LMD QMP MDG EAT IR E E G P++A+TAHA+ D +K
Sbjct: 996 --------ENFDLVLMDVQMPVMDGLEATRLIRAREQEEGLLRTPVIAITAHALKGDREK 1047
Query: 1067 CLGVGMNAYLTKPI 1080
CL GM++Y+ KPI
Sbjct: 1048 CLEAGMDSYVQKPI 1061
>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 305]
gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 305]
Length = 1014
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei K96243]
gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
[Burkholderia pseudomallei K96243]
Length = 1014
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|354581430|ref|ZP_09000334.1| multi-sensor hybrid histidine kinase [Paenibacillus lactis 154]
gi|353201758|gb|EHB67211.1| multi-sensor hybrid histidine kinase [Paenibacillus lactis 154]
Length = 905
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 31/279 (11%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYA 471
++ E S+ YKSQFLANMSHELRTP+ +++ L +IL + LT E+ I S
Sbjct: 496 KELEQSSKYKSQFLANMSHELRTPLNSMLILSQILSENKNGNLTEEEQHYASVIHNSGSE 555
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSKVE+GKM+++ +L + E++ F+ + N++ V+++ D++P
Sbjct: 556 LLNLINDILDLSKVEAGKMQIDMDLVNLTELPEQMRGYFAKSAESKNLDFVIEMDDDLPD 615
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ D R+ QI NL++N+IKFT SG + L SK + +D G
Sbjct: 616 IIYSDGLRLHQILRNLLSNAIKFTESGRV-------RLHVSKMNSIVTSDFMITGE---- 664
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
A+ F V+DTG GI ++ ++FE+F QG+ T RK GGTGLG
Sbjct: 665 ------------------AIAFSVEDTGIGIASNQLHSIFEAFHQGEEMTARKFGGTGLG 706
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
LSI L +GG I V + G+ LYL L SE+
Sbjct: 707 LSISLHLAKLLGGYITVESEEGKGSTFILYLPLVTDSET 745
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 1015 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA 1074
P D +L+D MP+MDG EA IR S ++PI+ +TA AM+ D + LG G N
Sbjct: 827 PEIDFVLLDIVMPEMDGVEALKRIR---SNPDWADLPIIIMTARAMDRD--QYLGYGANG 881
Query: 1075 YLTKPIDSERMVSTILRLT 1093
Y+ KP+ E++V+ I LT
Sbjct: 882 YIMKPVRMEKVVAAIKELT 900
>gi|356503926|ref|XP_003520750.1| PREDICTED: histidine kinase CKI1-like [Glycine max]
Length = 1056
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 266/556 (47%), Gaps = 73/556 (13%)
Query: 163 AIWYREPLDPITGEKIGKA--SPIPPDDLINIAGISQVPDGVASW--------------H 206
+I+Y +P++ TGE GKA S +P + +IN + + + S+
Sbjct: 120 SIYYIQPVNRDTGELYGKAIISEVPSN-IINTSWFVKAVNSSLSYASLGTKWNNDHDLLF 178
Query: 207 VAVSKFTNSPLLSAALPV------WDPTTSNKSIVAVVGVTTALSSVGQLMKELVE-VHS 259
V+ S+ + ++S +PV + P +N S+V G K LVE + +
Sbjct: 179 VSSSRIKGTQVISLGIPVTTITDFFTPVGANLSLVTKDG------------KMLVEGIQN 226
Query: 260 GHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPG 319
+ ++ Y + + N + ++ +V D D
Sbjct: 227 TRLGFSNDMVYFQSVNANG----DQTSYDGVVSCKDGD------------------AEAA 264
Query: 320 HVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASV 379
++++Q +Y + +++ + V V+ +PR+ + + K L +L + V
Sbjct: 265 SILNIQGV-----EYLIRCSTIDIMEIKSVYVLAVPRKGLDHFVLDIKKKGLALLTTMIV 319
Query: 380 CILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMA 439
IL+ + I + +EM L LI +A ++AE KS A+ SH++R +A
Sbjct: 320 MILIAMVSFLYINVRSLRREMHLCWSLIKQNEATQQAERKCMNKSLAFASASHDVRASLA 379
Query: 440 AIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499
+ GL+E+ + +E + + Q+ + LL LLN ILD SKVE+GKM LE EFD+
Sbjct: 380 GLTGLIEMSFHEVSPDSELGTNLRQMDSCTKDLLGLLNSILDASKVEAGKMLLEEEEFDV 439
Query: 500 QKELEELVDMFSVQCSNHNVETVLD-LSDNIPRNVR--GDPGRVFQIFSNLINNSIKFTS 556
+ LE++VD++ V+ VLD + ++ R R GD G++ Q+ NL++N++KFT
Sbjct: 440 FQLLEDVVDLYHSVAMKKGVDIVLDPCNGSVLRYSRTKGDRGKLKQVLCNLLSNAVKFTE 499
Query: 557 SGHIIIRGWCE--NLDTSK-NTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED-NKLALC 612
GHI +R W + +L +S T ++ + R R + +N ++D N +
Sbjct: 500 EGHIAVRAWAQKPSLQSSMIATHQYGSSRLLSRLCCRQNEARDDVEDLNIQQDPNCMDFT 559
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672
EVDDTG GI + K ++VFE++ Q TT GTGLGL IV++LV M G+I+++ K+
Sbjct: 560 IEVDDTGKGIPKEKHKSVFENYVQV-KETTLGQEGTGLGLGIVQSLVRLMHGDIEIMDKD 618
Query: 673 --SPGTLMQLYLLLGA 686
GT + +LL A
Sbjct: 619 IGEKGTCFRFNVLLTA 634
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 43/262 (16%)
Query: 834 NIVVTKPLYKGKMIQLLETAVRGKILGMQNRI-SSTTNEGNGEEIRGSIANYSASKHQKF 892
+IV++KPL+ ++ Q++ +IL + +++E E+ + S+ + A + +
Sbjct: 831 DIVLSKPLHGHRLFQVI------RILPEYGGVWPCSSSETKKEKGQVSLTDEGAIRRVEL 884
Query: 893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRI 952
++C G SS ++ + R+ H Q C SN+K L G++
Sbjct: 885 QEC---------GSSSVTQQSYDRSRARKSHI--HQGEIQECEEL---SNEKP-LWGMKC 929
Query: 953 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1012
L+ ED L++ + L+++GA+V +G QAV+ + L SS R
Sbjct: 930 LVVEDVVLLRRITKSTLDRLGASVMECENGEQAVQTVEEGLTRNSSNRPC---------- 979
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-- 1070
D ILMDCQMP MDGYEAT IR+ E HG +IPI ALTA N ++ L +
Sbjct: 980 -----DFILMDCQMPVMDGYEATRRIREIEKSHGV-HIPIFALTA---NTGKEAILSIEA 1030
Query: 1071 GMNAYLTKPIDSERMVSTILRL 1092
GM+ +L KPI+ E ++ I R+
Sbjct: 1031 GMDDHLIKPINKEALLKAIKRI 1052
>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei S13]
gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei S13]
Length = 1014
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|386863859|ref|YP_006276807.1| two-component system sensor protein [Burkholderia pseudomallei
1026b]
gi|418534917|ref|ZP_13100724.1| two-component system sensor protein [Burkholderia pseudomallei
1026a]
gi|385357344|gb|EIF63406.1| two-component system sensor protein [Burkholderia pseudomallei
1026a]
gi|385660987|gb|AFI68409.1| two-component system sensor protein [Burkholderia pseudomallei
1026b]
Length = 1014
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
Length = 919
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 16/297 (5%)
Query: 425 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 484
+FLA++SHE+RTPM IIG+ L +LT EQ + +K S+ ALL ++N +LD SK
Sbjct: 183 EFLASVSHEIRTPMNGIIGMTS-LALQTELTQEQREYLEMVKISADALLSIINDVLDFSK 241
Query: 485 VESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIF 544
+E+GK+E+E FD + + + V +++ +E D+ ++P + GDP R+ Q+
Sbjct: 242 IEAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVL 301
Query: 545 SNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFR 604
NL++N++KFT +G +++R ++ E D + + ++ A
Sbjct: 302 VNLVSNAVKFTDAGEVVVRAEVDSRAPLTPEEEASADSQGTPSLYAGEVLGDA------- 354
Query: 605 EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGG 664
+ L V DTG GI K VF++F Q D STTRK+GGTGLGL+I LV MGG
Sbjct: 355 ----VVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLGLTICARLVEMMGG 410
Query: 665 EIKVVKKNSPGT----LMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIIS 717
+I + + G+ +QL L GA+ + D T V++A + R I++
Sbjct: 411 KIWIESEAGKGSTFHFTLQLRALEGAARSRRLEIPKDLLGTKVLIADDNATARRILA 467
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 29/168 (17%)
Query: 933 PCSSSNSSSNQKRIL-----EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVE 987
P +S S++ +R GLR+L+AED + Q + + LE+ G V +V +G AVE
Sbjct: 591 PTRTSLRSADPRRAAPGPRARGLRVLVAEDNAINQKLMRRWLERQGHHVHIVENGRLAVE 650
Query: 988 ALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA 1047
+ ++D+ L+D +MP+MDG +A +R E G
Sbjct: 651 KIA-----------------------GGQYDVALLDVEMPEMDGLQAARVVRARERREGG 687
Query: 1048 RNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
++P++ +TA+AM D ++CL G + Y++KP+ E + I RL
Sbjct: 688 -HMPLIVVTAYAMKGDRERCLRAGFDGYVSKPVQVEELYDMIDRLAAG 734
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++L+A+D + + +E G V G A+ AL+ E S +L G
Sbjct: 448 LLGTKVLIADDNATARRILADTIEGWGMKAVPVDSGAAAIAALS-----EDSGVWALPWG 502
Query: 1007 SPSETPDTPR--FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
P P F L ++D +MPK+DG+ RK E G ++ L++ + AD
Sbjct: 503 KPGGNAVGPSSSFGLAIVDARMPKVDGFAVVEHCRKREILKGRV---LMLLSSTSAQADV 559
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTIL 1090
+C +G+ A +TKP+ + + +
Sbjct: 560 ARCRDLGVFAMVTKPVKTSHLQEAVF 585
>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 668]
gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 668]
Length = 1014
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 1236
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 150/275 (54%), Gaps = 33/275 (12%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
GV ++++ +++ L AR +AE +N KS FLA MSHE+RTPM +IG++++L+
Sbjct: 536 GVMRDIREHVRIMNDLQQARIEAEQANKAKSAFLAAMSHEIRTPMNGVIGMIDVLRQT-S 594
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
LT Q I+ S+Y+LL ++ ILD SK+E+GK+E+E L +E M +
Sbjct: 595 LTGYQMEMANLIRDSAYSLLSIIEDILDFSKIEAGKLEIEKIPMSLANIVENACGMLAHV 654
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ VE L + IP N+ GDP R+ QI N+INN+IKF+S
Sbjct: 655 ALSKKVELTLFIDPEIPENMLGDPLRLRQILVNIINNAIKFSSK---------------- 698
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
++K G+ L ++N +++ + F++ D G G+++ E +F+S
Sbjct: 699 --------QEKQGKVSVRVLLTESN-------PDQVVVTFQITDNGIGMNKETQEKLFKS 743
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
F QGDPSTTR+ GGTGLGL+I L M EI V
Sbjct: 744 FSQGDPSTTRRFGGTGLGLAISHHLAELMDAEITV 778
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 29/163 (17%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P S + ++RIL IL+AED + Q V + L +G + DG EAL R
Sbjct: 966 PKPISREEALRQRIL----ILVAEDNDINQKVIRQQLNLLGYAADIASDG---KEALKRW 1018
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
T +DL+L D MP+MDG+E T EIR E+ + IPI
Sbjct: 1019 --------------------QTGDYDLLLTDLHMPEMDGFELTREIRTIEANQ--KRIPI 1056
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
VALTA+A+ ++++CL GM+ YL+KP+ E + + + + N
Sbjct: 1057 VALTANALKGEKERCLQTGMDDYLSKPVQLEDLRAMLEKYLPN 1099
>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
Length = 993
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 187/376 (49%), Gaps = 56/376 (14%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I + + VI C+ IL + +K+ + + D + KAEA++ KSQFLA +SH
Sbjct: 333 IAYTTAFLFFVILCLVGYILYAAGTHIVKVEDDYNAMQDLKVKAEAADIAKSQFLATVSH 392
Query: 433 ELRTPM-AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM + L +L+++ T Y+ Q AL+ L+N +LD +K+E+GK+E
Sbjct: 393 EIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLE 450
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FDL+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS
Sbjct: 451 LEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNS 510
Query: 552 IKFTSSGHIIIR------------GWCE-----------------NLDTSK--------- 573
+KFT GHI ++ G CE NL T
Sbjct: 511 VKFTERGHIFVKVHLAEKRQCTMNGKCETFLNGGCDDVLHVSGSYNLKTLSGYEAADERN 570
Query: 574 ---NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
N D + F F +K+ A++ ++ L V+DTG GI S +++
Sbjct: 571 SWDNFKHHIADEEFF---FDASVKKLASS----ESYEQVTLMVSVEDTGIGISFSAQDSI 623
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG----- 685
F F Q D ST+R +GGTG+GLSI + LV MGG+I + + G+ G
Sbjct: 624 FMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTFKKN 683
Query: 686 ASSESKQIYDADFPNT 701
++++ K++ D P++
Sbjct: 684 STTDMKKLNFEDLPSS 699
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 37/189 (19%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
G+ + Q ++ S+ + +L G +IL+ +D + + VA L+ GA V G
Sbjct: 824 FGTGKTRQFGKDMSNGSSVRSLLCGKKILVVDDNLVNRRVAAGALKNFGADVKCAASGKA 883
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIR----- 1039
A+E L P + FD MD QMP+MDG+EAT IR
Sbjct: 884 ALEMLQY----------------PHD------FDACFMDIQMPEMDGFEATRRIRMMERE 921
Query: 1040 -----KSES--EHGAR---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
KSES E+G + ++PI+A+TA ++A KCL GM+ Y++KP + E + +
Sbjct: 922 ASEQLKSESGEENGKKSEFHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAV 981
Query: 1090 LRLTKNMPS 1098
+ K+ P+
Sbjct: 982 AKFFKSKPA 990
>gi|452853014|ref|YP_007494698.1| Multi-sensor hybrid histidine kinase [Desulfovibrio piezophilus]
gi|451896668|emb|CCH49547.1| Multi-sensor hybrid histidine kinase [Desulfovibrio piezophilus]
Length = 1241
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 144/264 (54%), Gaps = 33/264 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R AEA+N KS+FLA MSHE+RTPM AI+G+ EI +L + Q + + S+ L
Sbjct: 710 REDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTEI-TLQTELNDAQRDYLHTVMNSARHL 768
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L ++N ILDLSK+E+ K+ L+ T+FDL + + +Q ++ +LD+++++P
Sbjct: 769 LSIINDILDLSKIEARKLTLDRTDFDLPYHVRTTIKGLEIQGREKELKVILDIAEDVPTC 828
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
V+GDP + Q+ NL+ N+IKFT G I IR D + ++ T
Sbjct: 829 VKGDPLSLRQVLMNLVGNAIKFTHRGIISIRVSKAAPDPHRTASDART------------ 876
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
+ L FEV+DTG GI + +T+F+SF Q TTR GGTGLGL
Sbjct: 877 ----------------IGLLFEVEDTGIGIPEEFMDTIFQSFSQ----TTRAFGGTGLGL 916
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGT 676
+I + L+ MGG+I V K G+
Sbjct: 917 AICKQLIGLMGGDICVESKVGNGS 940
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 27/161 (16%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G+ +L+AED + +V LE++G T SV +GL+ +E L
Sbjct: 971 GVHVLVAEDNDVNVMVTSLRLEEMGYTYSVASNGLEVLELLK------------------ 1012
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKS--ESEHGARNIPIVALTAHAMNADEKK 1066
FDLILMD +MP +DG AT IR + IPI+ +TAHA+ K
Sbjct: 1013 -----NEDFDLILMDIEMPVLDGISATKAIRSAVPGGPIPNPAIPIIGVTAHALKEFRDK 1067
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL--TKNMPSEATGTTR 1105
L GM+ Y++KP+D + + I RL T+ M S + T+R
Sbjct: 1068 SLDAGMDDYVSKPVDFNELSAIINRLVGTRAMISPSRQTSR 1108
>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 415
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 152/286 (53%), Gaps = 21/286 (7%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
+LR + AR A KS+FLA MSHE+RTPM ++G+ + L D LT EQ
Sbjct: 135 ELRESQATLTQARDAAIEGARLKSEFLATMSHEIRTPMNGVLGMTDWLL-DTPLTAEQLD 193
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
I+ S ALL ++N ILD SK+ESGK+ LE +FDL L+ ++ +F + +
Sbjct: 194 CAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDFDLSTFLDRVMALFGERAQRKGLL 253
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT--SKNTAEF 578
+++++P ++ GDP R+ QI SNL+ N+IKF+ G + + LD ++ EF
Sbjct: 254 LTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEHGSVSV---LVELDQRPAEQGLEF 310
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
P R +G Q + R F V D G GI+ S + +F+ F Q D
Sbjct: 311 PATR--YGEP-----SAQQEQVTHIR--------FSVSDNGIGIEPSAFSKLFQPFVQAD 355
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
STTRK+GGTGLGL+I + LV MGG I + G++ + + L
Sbjct: 356 GSTTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPL 401
>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 576]
gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 576]
Length = 1014
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 28/131 (21%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPI 1080
VG+ + KP+
Sbjct: 878 VGIAEIVLKPL 888
>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1655]
gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1655]
Length = 1014
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|334342915|ref|YP_004555519.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
gi|334103590|gb|AEG51013.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
Length = 766
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 146/298 (48%), Gaps = 40/298 (13%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
L S E ++ + ARR AE ++ K+ FLANMSHE+RTPM I+G ++L
Sbjct: 264 LVRDASGEPDFFVCVVEDIGARRSAEMASAAKTGFLANMSHEIRTPMNGILGFADLLLGA 323
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
L +Q+ V I S A++RLLN ILDLSKVE+G+ME+ FDL L+ +++
Sbjct: 324 G-LPPDQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVR 382
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
V ++ + D++D++PR V GD R+ Q+ NL+ N++KFTS GH+ +R + D
Sbjct: 383 VGAEQKGIDLIRDIADDLPRTVTGDGLRLRQVVLNLLGNAVKFTSEGHVALRVHLDGADR 442
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
L V+D+G GI + +F
Sbjct: 443 ---------------------------------------LVIVVEDSGPGIAPERQAAIF 463
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
E F Q D T + GG+GLGLSI LV M GE+ + G+ L L A+ E
Sbjct: 464 EKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLPCEAAGE 521
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 20/135 (14%)
Query: 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQ 1005
+L LR+L+AED + Q + +LE++G + ++V DG QAV A+ R +
Sbjct: 536 LLHDLRVLVAEDHDVNQELVRAMLERIGCSATIVEDGAQAVAAVLRARG----------E 585
Query: 1006 GSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK 1065
G+P +D++LMD QMP M G +A IR A +PI+ALTA+A D
Sbjct: 586 GAP--------YDIMLMDMQMPVMGGLDAARAIRAQGVS--AHELPILALTANAFGEDVH 635
Query: 1066 KCLGVGMNAYLTKPI 1080
L GM A+L KP+
Sbjct: 636 ASLAAGMQAHLAKPL 650
>gi|255542874|ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223548461|gb|EEF49952.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 912
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 216/428 (50%), Gaps = 18/428 (4%)
Query: 255 VEVHSGHIYLTSQEGYLLATSTNAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQS-EYG 313
++ H G+ YL + +G ++ + + G V+ + + +MG L
Sbjct: 62 LDFHGGYFYLGTVDGQVIMQTIPPDTQIDMLNGSVTVQIFNPNGG--KMGQDNLSCFSVD 119
Query: 314 SKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLII 373
K+ P H K+ +Y L + + V V+ PR+ ++ + I+
Sbjct: 120 GKLRPLH------GKIVGNRYIFYCSNLYIAGVQSVYVLAYPRDGLVNLVQRNIKLSTIL 173
Query: 374 LISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHE 433
L V I I +++ +EM L A LI +A ++AE + K++ A +H+
Sbjct: 174 LALVFVFIFTSFLIYMVMTVRATKREMFLCAALIKQTEATQQAERKSMNKTKAYAGANHD 233
Query: 434 LRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
+R +AAI GL+E+ + D + +E + + Q++ + LL +LN +LD+SK+E+GK LE
Sbjct: 234 VRASLAAITGLIELCQDDVKSGSELATNLDQMQNCTRDLLEILNSVLDMSKIEAGKTSLE 293
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD--NIPRNVRGDPGRVFQIFSNLINNS 551
EF+L + LE++V M+ V+ VLD D +P +VRGD ++ QI NL++N+
Sbjct: 294 IEEFNLAQLLEDVVGMYYPLGMKKCVDIVLDPCDASKLP-DVRGDRIKLKQILCNLLSNA 352
Query: 552 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF---RED-N 607
IKFTS+GH+ +R + + K T KF R + K + F +E+ N
Sbjct: 353 IKFTSAGHVSVRAVVKKKNIEKEIIASSTTALKFLSWMRRRNKDACTDLDAFHTVKENPN 412
Query: 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIK 667
++ FEVDDTG GI + K ++FE + Q + + G GLGL IV++LV M GE+
Sbjct: 413 EMEFEFEVDDTGQGIPKDKQTSIFEDYVQVKETAIGQE-GCGLGLGIVQSLVRVMKGELT 471
Query: 668 VVKKNSPG 675
+++K PG
Sbjct: 472 IIEKE-PG 478
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 11/143 (7%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++L+ ED L++ + L K+GA V +G EAL ++ A S +++ +G
Sbjct: 775 LNGKKVLVVEDAELLRRIVTTTLGKLGANVEACTNG---EEALTQVCKALSDQKK---EG 828
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
P +D I MDC+MP M+GYEAT IR E +H +IPI+ALTAHAM + K
Sbjct: 829 DSKSIP----YDYIFMDCEMPVMNGYEATRLIRIEERKHDV-HIPIIALTAHAMPEEASK 883
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+ GM+ +L KP+ ++++ I
Sbjct: 884 SIDAGMDFHLNKPLQVDKLLGVI 906
>gi|428177713|gb|EKX46591.1| hypothetical protein GUITHDRAFT_45786, partial [Guillardia theta
CCMP2712]
Length = 2293
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 39/306 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+L++A+ V G I +I GV +++ L+ +A+A+N+ KSQFLA MSH
Sbjct: 1855 VLLNATTRRDVTGAIVGVI---GVGQDITEMRRLMEQEALLFQAQAANDAKSQFLATMSH 1911
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTP+ I+G+ +++ + L +EQ QIK SS +LL L+N ILDL+K+E+GK+EL
Sbjct: 1912 EMRTPLNVIMGMNDLI-LETSLLDEQRKFAEQIKSSSESLLVLINDILDLTKIEAGKLEL 1970
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
+ +FDL++ +E+ VD + + +E +S N P V GDP R+ QI NL++N I
Sbjct: 1971 VSVDFDLRQVIEDTVDSVASKALGKGLEICCYMSPNTPTVVNGDPDRLRQILLNLLSNGI 2030
Query: 553 KFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612
KFT+SG + + E E PT +AFR
Sbjct: 2031 KFTNSGQVYLLAEMEE--------ETPTH-----QAFR---------------------- 2055
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672
F+V D+G GI + + +F F Q D STTR +GGTGLGL+I + M G + V
Sbjct: 2056 FKVYDSGIGISEEGQKKLFNRFSQVDSSTTRTYGGTGLGLAISKQFAELMNGSMGVQSNL 2115
Query: 673 SPGTLM 678
G+L
Sbjct: 2116 GKGSLF 2121
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
FDL+LMDC MP MDG++AT +IR+ + + PI+A+TA+AM D KC+ GM+ Y+
Sbjct: 2220 FDLVLMDCNMPIMDGWQATEKIRQRAGLN--QTTPIIAVTANAMKGDRDKCIAAGMDDYI 2277
Query: 1077 TKPIDSERMVSTILR 1091
+KP++ +R+ I +
Sbjct: 2278 SKPVERKRLYEIIAK 2292
>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106a]
gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106b]
gi|403521445|ref|YP_006657014.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BPC006]
gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106a]
gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106b]
gi|403076512|gb|AFR18091.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BPC006]
Length = 1032
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 521 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 574
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 575 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQET 633
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 634 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 689
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 690 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 718
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 719 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 776
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 804 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 846
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 847 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 895
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 896 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 925
>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1710a]
gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1710a]
Length = 1014
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pakistan 9]
gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pakistan 9]
Length = 1032
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 521 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 574
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 575 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 633
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 634 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 689
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 690 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 718
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 719 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 776
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 804 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 846
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 847 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 895
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 896 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 925
>gi|418542561|ref|ZP_13107982.1| two-component system sensor protein [Burkholderia pseudomallei
1258a]
gi|418549083|ref|ZP_13114163.1| two-component system sensor protein [Burkholderia pseudomallei
1258b]
gi|385355279|gb|EIF61493.1| two-component system sensor protein [Burkholderia pseudomallei
1258a]
gi|385356130|gb|EIF62268.1| two-component system sensor protein [Burkholderia pseudomallei
1258b]
Length = 1014
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1069
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 143/277 (51%), Gaps = 34/277 (12%)
Query: 409 HLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKK 467
HL+ AR +AE ++ K FLA MSHE+RTP+ A+IGL + L + Q EQ + I++
Sbjct: 544 HLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSDALL-EGQAAPEQIDHLRAIRE 602
Query: 468 SSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSD 527
S+ LL ++N ILD SK+E+GK+ LE FD + + E + + S + ++
Sbjct: 603 SAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRALVAEALRAVELVASQKRLALSATIAP 662
Query: 528 NIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGR 587
N+P +RGDPGR+ QI NL+ N++KFT++G + + P D+ GR
Sbjct: 663 NVPAALRGDPGRLRQILLNLLGNAVKFTAAGSVAV-----------TVETVPADQTPAGR 711
Query: 588 AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
+ L V DTG G+D ++ +FE F QG R+ GG
Sbjct: 712 ---------------------IGLAVAVTDTGIGLDPTRASELFERFNQGPGKAARRFGG 750
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
TGLGL+I + LV +MGG I V + G+ + L
Sbjct: 751 TGLGLAISKELVERMGGHIGVTSRQGAGSRFAFTVFL 787
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 940 SSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSR 999
++N K LRILL ED L V + ++G ++V +A L +
Sbjct: 802 TANAKAAPGPLRILLVEDNALNAAVTRLHMGRMGHDLTVAESAREAFACLAQ-------- 853
Query: 1000 RRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR----NIPIVAL 1055
RFD +LMD +MP++DG EAT IR + G +PI+A+
Sbjct: 854 ---------------ERFDAVLMDIEMPEIDGIEATSAIRAG-APLGTPVLDPTVPIIAV 897
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
TAHA+ ++CL GM+ ++TKP++ + +T+ L + P
Sbjct: 898 TAHAVEDVRQQCLEAGMDGFVTKPVNYRALEATLDALRREPP 939
>gi|406935782|gb|EKD69662.1| hypothetical protein ACD_47C00045G0004 [uncultured bacterium]
Length = 913
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 147/274 (53%), Gaps = 36/274 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE +N K +FLANMSHE+RTPM AI+G L++L S+ ++ EQ V Q SS
Sbjct: 270 AKESAEKANLAKGRFLANMSHEIRTPMNAILGFLDLL-SESGVSGEQLEYVRQANSSSKL 328
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL LLN ILD SK+E+G++ +E EF+L++ LE+ V M S + N+ + D++P
Sbjct: 329 LLYLLNDILDFSKIEAGRVSMEKIEFNLRRTLEDTVKMLSHKAGAKNLYLLAVTDDDVPE 388
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+V GDPGR+ QI SN++ N+IKFT G + I+
Sbjct: 389 DVSGDPGRLKQILSNILYNAIKFTHEGGVRIK---------------------------- 420
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+M + + + FE+ DTG G+ S +F+ F Q D S TRK+GGTGLG
Sbjct: 421 -------VSMAEDHETEAVIRFEIRDTGIGMSGSAIANLFKPFSQADESMTRKYGGTGLG 473
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
L+I R L M G+I V GT + LG
Sbjct: 474 LAISRELARMMDGDITVESVEGSGTAFFAAVRLG 507
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 30/159 (18%)
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
H I S R D + + +K L ILLAED + + + +L+ G + DG
Sbjct: 660 HGISSPRADVENPPAERAPGRK-----LEILLAEDNSVNRKLIGSMLKSRGYRFDLASDG 714
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
+A+E ++D++ MDCQMP MDGYE+ +I++
Sbjct: 715 KEALEKCC-----------------------AKKYDVVFMDCQMPVMDGYESAGKIKQCL 751
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
+ GA +I VA+TA+AM D +KCLG GM+ Y++KPI+
Sbjct: 752 AGSGAPHI--VAMTANAMEGDREKCLGAGMDDYISKPIN 788
>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei MSHR346]
gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei MSHR346]
Length = 1032
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 521 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 574
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 575 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 633
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 634 VDAYAPLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISI---- 689
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 690 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 718
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 719 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 776
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 804 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 846
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 847 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 895
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 896 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 925
>gi|418394962|ref|ZP_12969017.1| two-component system sensor protein [Burkholderia pseudomallei
354a]
gi|418558470|ref|ZP_13123026.1| two-component system sensor protein [Burkholderia pseudomallei
354e]
gi|385362593|gb|EIF68401.1| two-component system sensor protein [Burkholderia pseudomallei
354e]
gi|385374452|gb|EIF79331.1| two-component system sensor protein [Burkholderia pseudomallei
354a]
Length = 1014
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 503 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 556
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 557 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 615
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 616 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 671
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 672 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 700
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 701 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 758
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 786 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 828
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 829 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 877
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 878 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 907
>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 406e]
gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 406e]
Length = 1035
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 156/298 (52%), Gaps = 42/298 (14%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+C L L + KE +L+ + +AR A+ +N KS FLA MSHE+RTP+ AIIG LE
Sbjct: 524 LCTL-LDISLRKESELKLK-----EARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLE 577
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ +Q + ++ S ALL ++N ILDLSKVESG+M LEN FD+ L+E
Sbjct: 578 LLRRS-PLSEQQSERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQET 636
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
VD ++ + + + + + + R+ GDP R+ Q+ SNLI N+IKFT GHI I
Sbjct: 637 VDAYAPLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISI---- 692
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
R K R + A+ V+DTG GI +
Sbjct: 693 ------------DVHRAKAAR-------------------DGSAIEIWVNDTGIGIRPDR 721
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
T+F+ + Q D S R+ GG+GLGL + + LV MGG I++ GT + + L L
Sbjct: 722 IATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTVTVALPL 779
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+AED P + + LE + V VV +G +A+ A
Sbjct: 807 LHVLVAEDHPANRALLRDQLEALDHRVDVVENGREALRAFGEH----------------- 849
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
++D++L D MP++DGY K + PIVA+TAHA + D ++
Sbjct: 850 ------QYDIVLTDLGMPELDGYGFARFANKMRA-----GTPIVAMTAHATDEDYQRSKK 898
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
VG+ + KP+ + + R P+E
Sbjct: 899 VGIAEIVLKPLSLTTLEKVLQRHAMRAPAE 928
>gi|354564979|ref|ZP_08984155.1| multi-sensor hybrid histidine kinase [Fischerella sp. JSC-11]
gi|353550105|gb|EHC19544.1| multi-sensor hybrid histidine kinase [Fischerella sp. JSC-11]
Length = 2264
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 26/281 (9%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRL 475
A+A+N KS+FLANMSHELRTP+ AI+G +I+ D L++E + I ++ LL L
Sbjct: 1730 ADAANRAKSEFLANMSHELRTPLNAILGFTQIMSRDSTLSSENKQNLAIINRAGEHLLNL 1789
Query: 476 LNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRG 535
+N IL++SK+E+G+ L + FDL L+ L +M ++ ++ V + + IPR VR
Sbjct: 1790 INDILEMSKIEAGRTTLNLSSFDLIYLLDNLQEMLHIRAVAKGLKLVFEYAPEIPRYVRT 1849
Query: 536 DPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQ 595
D ++ Q+ N++ N+IKFT +G + +R F TD KK R +++
Sbjct: 1850 DSSKLRQVLLNVLGNAIKFTETGSVKLRV-------------FLTDAKKDDR----EIEG 1892
Query: 596 QANNAMNF--------REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647
+ NF K LCFE+ DTG GI + + +F++F Q + + + G
Sbjct: 1893 LGDGEKNFTPPPHLPTTPSQKPHLCFEIQDTGPGISPEEIDLLFQAFGQTE-AGRKSQQG 1951
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
TGLGL+I R V MGGEI V G++ Y+ +G +S
Sbjct: 1952 TGLGLAISRKYVQLMGGEINVSSTVGVGSVFSFYIQIGIAS 1992
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS-ETPDTPRFDLILMDCQMPKMDGY 1032
++ +V D + ++AL+ L+ R L+ GS E DLIL+D +MP +DGY
Sbjct: 12 GSILIVDDSWEHLQALSATLSQYGYAVRGLITGSMVLEVAKLALPDLILLDIKMPDIDGY 71
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMV 1086
E +++ E+ +IP++ L+ + D+ K +G Y+TKP +E ++
Sbjct: 72 EVCQQLKADEA---TCHIPVIFLSVYHDVFDKVKAFKIGAVDYITKPFQAEEVL 122
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 55/171 (32%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D +++ K+L +G +V +G +A+ L
Sbjct: 2017 RILVVDDANDSRLLLVKLLTSIGFSVREATNGKEAISIWESWLP---------------- 2060
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEI-----------------RKSESEHGARNIP-- 1051
DLILMD +MP MDGYEAT EI R+ + E+ N
Sbjct: 2061 -------DLILMDMRMPIMDGYEATREIKRRERQDKGDKGDIGILRRGDGENVVDNFSAS 2113
Query: 1052 -------------IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I+ALTA+A + + G + ++ KP E ++ +
Sbjct: 2114 PTLRVWGSSSPTIIIALTANAFEEQRQAMISAGCDDFINKPFREELLLEKL 2164
>gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 1193
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 147/273 (53%), Gaps = 19/273 (6%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSS 469
A+ AE +N KS+FLANMSHE+RTPM AI+G E+L+ DD + S + I S
Sbjct: 687 AKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQGIIDDPRSR---SYLNSIASSG 743
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILDLSK++SGK+++ L+ +EE+ +F V L ++D+I
Sbjct: 744 KILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDI 803
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + D R+ QI N++ N++KFT G + I K T + P +R+K +
Sbjct: 804 PSTIIFDEVRLRQILFNVLGNALKFTHEGAVKI--------AVKATKKLPENREKIDHVY 855
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+L Q + A + L V+DTG GI + + +F++F Q + +TRK+GGTG
Sbjct: 856 HNRLVNQQSKADCY------CLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGTG 909
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGL+I R L +GG I + + G+ Y
Sbjct: 910 LGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYF 942
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF---DLILMDCQMPKMD 1030
AT+ VV D + E + A ++ R L E + +F D+ILMD +MP+MD
Sbjct: 970 ATILVVDDVISNRELIEGYFA--NTHHRILQAKDGIEAINQAQFYHPDVILMDLRMPRMD 1027
Query: 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
G E++ +I K + ++IPIV +TA + DE++ L L KPI + T+
Sbjct: 1028 GLESS-KILKEDPL--TQDIPIVIITASS-KKDEEQLLKTFCVTCLYKPISRSELFETL 1082
>gi|427733873|ref|YP_007053417.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
gi|427368914|gb|AFY52870.1| PAS domain S-box [Rivularia sp. PCC 7116]
Length = 1486
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 170/300 (56%), Gaps = 12/300 (4%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+TN + KL + + A++ AEA+N+ KS+FLA M+HELRTP+ AI+G +IL
Sbjct: 971 ITNLLRANAKLEQQSQELIRAKQTAEAANHAKSEFLARMTHELRTPLNAILGFTQILNRQ 1030
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
L +Q + I +SS+ LL L+N ILD+SK+E+G EL T FDL + L+ + M
Sbjct: 1031 RNLQTQQKQYLDTILRSSHHLLGLINDILDISKIEAGMAELHITSFDLYRLLDGIESMLY 1090
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
++ + ++ +L IP+ ++ D ++ QI N++ N+IKFT SG + +R
Sbjct: 1091 LKAKSKQLQFTFELDPEIPQYIQTDESKLRQILINILGNAIKFTDSGKVELRL------- 1143
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
TA + K + +TK ++Q N + L+L F++ D+G GI + +++F
Sbjct: 1144 ---TALASQEEKSIQESNQTKTQEQ-NTENPLLSSSTLSLQFQITDSGKGIATEELKSIF 1199
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
++F Q +P T + GTGLGL+I + V MGG+IK+ K GT ++ ++ G ++ +
Sbjct: 1200 DAFVQSNP-TYQAQDGTGLGLAICKRFVQLMGGDIKIHSKLGEGTTVEFNIIAGVTANEQ 1258
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 15/116 (12%)
Query: 978 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIE 1037
+ P G Q VEA N A E + D P +LILMD +MP +DGY+AT +
Sbjct: 1297 LTPIGFQLVEANNGQEAIELWEQ------------DEP--NLILMDMRMPVIDGYQATKQ 1342
Query: 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
IR+ E ++ +IPI+ALTA A N + + L +G + ++ KP E ++ I R T
Sbjct: 1343 IREKE-KNTQHHIPIIALTATAFNENRELILMIGCDDFIPKPFQEEVLLEKIARHT 1397
>gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 1193
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 147/273 (53%), Gaps = 19/273 (6%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSS 469
A+ AE +N KS+FLANMSHE+RTPM AI+G E+L+ DD + S + I S
Sbjct: 687 AKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQGIIDDPRSR---SYLNSIASSG 743
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILDLSK++SGK+++ L+ +EE+ +F V L ++D+I
Sbjct: 744 KILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDI 803
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + D R+ QI N++ N++KFT G + I K T + P +R+K +
Sbjct: 804 PSTIIFDEVRLRQILFNVLGNALKFTHEGAVKI--------AVKATKKLPENREKIDHVY 855
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+L Q + A + L V+DTG GI + + +F++F Q + +TRK+GGTG
Sbjct: 856 HNRLVNQQSKADCY------CLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKYGGTG 909
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGL+I R L +GG I + + G+ Y
Sbjct: 910 LGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYF 942
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF---DLILMDCQMPKMD 1030
AT+ VV D + E + A ++ R L E + +F D+ILMD +MP+MD
Sbjct: 970 ATILVVDDVISNRELIEGYFA--NTHHRILQAKDGIEAINQAQFYHPDVILMDLRMPRMD 1027
Query: 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
G E++ +I K + ++IPIV +TA + DE++ L L KPI + T+
Sbjct: 1028 GLESS-KILKEDPL--TQDIPIVIITASS-KKDEEQLLKTFCVTCLYKPISRSELFETL 1082
>gi|424029906|ref|ZP_17769407.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-01]
gi|408883581|gb|EKM22363.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
protein [Vibrio cholerae HENC-01]
Length = 878
Score = 164 bits (414), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 146/267 (54%), Gaps = 35/267 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L + A ++N KS FLA+MSHE+RTP+ IIG+ EIL S +L++ Q + I SS
Sbjct: 366 LQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEIL-SQSELSDHQKEVLTDIDTSS 424
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+ LL LLN ILDLSK+ESG ++L E D+++ + + + +F + ++ +E ++L + I
Sbjct: 425 HTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILFQSKATSKQLELNINLDERI 484
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P ++ D R+ QI NL++N++KFT G C N+D + E T + F
Sbjct: 485 PARIKVDDHRIKQIVMNLVSNAVKFTEKG-------CINVDV--DYQESTTQKSVF---- 531
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
L F V DTG GI++ K +++FE F Q D +R+ GGTG
Sbjct: 532 ---------------------LTFRVSDTGVGIEKDKLDSIFEPFTQEDEGISRQFGGTG 570
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGL+I R LV MGG++ GT
Sbjct: 571 LGLAICRQLVAMMGGKLAATSSKGVGT 597
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 22/135 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q +A L+K G + +G +A+EA+ +
Sbjct: 756 RILIAEDNLMNQKIASFFLDKAGYDYLIASNGQEALEAITK------------------- 796
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+FD ILMDC MP MDG AT EIR+ E E G+ I I+ALTA + D + C
Sbjct: 797 ---GEKFDAILMDCMMPVMDGLTATKEIRRWEKEVGSGKITIIALTASVLEEDIQNCFAA 853
Query: 1071 GMNAYLTKPIDSERM 1085
GM+AYL KP S ++
Sbjct: 854 GMDAYLPKPYKSNQL 868
>gi|359434928|ref|ZP_09225170.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
gi|357918503|dbj|GAA61419.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
Length = 983
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 38/308 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
KAE + KSQFLA MSHE+RTPM ++G+LE+++ + L+ + V K S+++LL
Sbjct: 459 KAEDAAIVKSQFLATMSHEIRTPMNGVLGMLELIQLE-PLSKSIETKVGIAKSSAHSLLG 517
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK E+GK+ELEN F+ + + E+ + +E +LDL P +
Sbjct: 518 VINDILDFSKAEAGKIELENINFNAKDLIGEIAAAQAFTAQEKGIEIILDLVRLEPAQLC 577
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDPGR+ Q+ +NL++N++KFT+ G ++I ++ G AF+ K+K
Sbjct: 578 GDPGRIRQVLTNLLSNAVKFTNEGEVVISAQINKVEK--------------GLAFQIKVK 623
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
D+G GI++ K + +F F Q D STTR++GGTGLGL+I
Sbjct: 624 ----------------------DSGIGINEKKQQKLFTPFSQVDASTTREYGGTGLGLAI 661
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYL-LLGASSESKQIYDADFPNTVVVLATVGSMER 713
+ L M G I + + G+ + + + + I+ D N V++ R
Sbjct: 662 CKQLCELMNGSISLTSEAGTGSEFTATISVTQGDQKERYIHKLDIKNLSVLVVDDNKTNR 721
Query: 714 MIISQWLR 721
++ISQ L
Sbjct: 722 IVISQQLE 729
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 20/142 (14%)
Query: 939 SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESS 998
SS ++++ ILL ED + Q V+ +L+K+ +++ +G QAV+ L++
Sbjct: 849 SSLRKEKLQRYAHILLVEDNLINQRVSTLMLKKLNCDITLAENGQQAVDILSK------- 901
Query: 999 RRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAH 1058
+ F+++LMDCQMP MDG++AT IR ++ ++I I+ALTA+
Sbjct: 902 -------------HEDGYFNVVLMDCQMPVMDGFDATAAIRNGDAGDKHKDIKIIALTAN 948
Query: 1059 AMNADEKKCLGVGMNAYLTKPI 1080
AM +D+++C GM+ YL+KPI
Sbjct: 949 AMESDKQRCFDAGMDNYLSKPI 970
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
++ L +L+ +D +IV + LE GA V + D +A+E + + + +
Sbjct: 706 IKNLSVLVVDDNKTNRIVISQQLEHWGAQVELASDAYEALEMCEKRINNKQTM------- 758
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+D+ ++D QMP MDG A + K+ +++ +N+P+V +T+ A ++
Sbjct: 759 ----------YDIAVLDMQMPGMDGI-ALCKALKAHNDY--KNMPLVMMTSIAGMEGAQR 805
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
G AY KP+ + M+S + +T N
Sbjct: 806 YSDAGFQAYFPKPVTTADMISALCVITNN 834
>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
17132]
gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
17132]
Length = 1076
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 161/305 (52%), Gaps = 43/305 (14%)
Query: 391 ILTNGVSKEMKLRAELISHLDARRKAEASNNY----KSQFLANMSHELRTPMAAIIGLLE 446
I GV++++ EL+ D +KA+ + K QFLANMSHE+RTPM IIG+++
Sbjct: 535 IEVEGVARDV---TELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMID 591
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L ++ +L Q V I+ SS LL +LN ILDLSK+E+G+M +E FDL++ L+ L
Sbjct: 592 VL-NETELDKSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNL 650
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
V +F + + N + + + GD R+ QI SNL +N+IKFT +G++IIR
Sbjct: 651 VALFKQKAAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFTQNGNVIIRIQW 710
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
E D ++ +F L FEV DTG GI +
Sbjct: 711 EGQD----------EKTQF-------------------------LRFEVADTGIGISEEN 735
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
+ +F SF+Q D ST + GGTGLGL I + LV MGGEI + K G++ L G
Sbjct: 736 QKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIGLTSKLGEGSVFWFTLPAGL 795
Query: 687 SSESK 691
+ E +
Sbjct: 796 AVEGE 800
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 25/139 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL +D + + VA +IL+K V G++A++
Sbjct: 823 KILLVDDNAINRKVAMEILKKANCHVIGADSGMKALDTFQ-------------------- 862
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ P FDLILMD QMP+MDG E T +R+ + G++ +VA+TA++M D +K L
Sbjct: 863 --NNPDFDLILMDIQMPEMDGIETTKILRE---KFGSKLPKVVAMTAYSMENDREKFLSS 917
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ YL KPI + ++ +
Sbjct: 918 GMDNYLAKPIRANLLIQKV 936
>gi|392382751|ref|YP_005031948.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356877716|emb|CCC98562.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1179
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 144/258 (55%), Gaps = 17/258 (6%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ KAEA K +FLA MSHE+RTPM +IG+ +L+ + L EQ I+ S+
Sbjct: 464 EAKEKAEAGQRSKMEFLATMSHEIRTPMNGVIGMAGLLQ-ETHLDEEQRGYADTIRDSAE 522
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILD SK+++G++ LE ++F+ +E +V++ + + + +E + +
Sbjct: 523 SLLTIINDILDFSKIDAGRLTLEVSDFEAVPLVESVVELLAPRATAKGLELACYVPPALH 582
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+RGDPGR+ QI NL N++KFT G + I L ++ A P DR + G
Sbjct: 583 GPLRGDPGRLRQILINLAGNAVKFTDQGSVTI-----VLSVEQDDAAGPDDRPEPG---- 633
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ + + + + FEV DTG GI + + +F F Q D S+ R+HGGTGL
Sbjct: 634 -------DSLVPAPHETPVTIRFEVRDTGIGIAAADHKRLFTMFSQVDGSSARRHGGTGL 686
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L MGG I V
Sbjct: 687 GLAICKRLAELMGGRIGV 704
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 25/141 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED P+ V +L + G V V +GL+AV A+ +
Sbjct: 911 RILVAEDNPVNLQVTLALLRRAGHAVDSVSNGLEAVNAVAAL------------------ 952
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+LMD QMP+MDG AT IR+ A +PIVA+TA+ M D+ CL
Sbjct: 953 -----PYDLVLMDVQMPEMDGLAATRAIRRMGGI--AARVPIVAMTANVMEGDQAICLAA 1005
Query: 1071 GMNAYLTKPIDSERMVSTILR 1091
GM+ YL KPI +++++ T+ R
Sbjct: 1006 GMDDYLPKPIVADQLLQTVAR 1026
>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1225
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 169/328 (51%), Gaps = 35/328 (10%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
I+ASV + VI + I +++ K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 580 INASVGVFVITLLLGHIFYAAINRIAKVEDDYRQMRELKVRAEAADVAKSQFLATVSHEI 639
Query: 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494
RTPM ++G+L++L D +L Q KS L+ +++ +LD +K+E+GK+ELE
Sbjct: 640 RTPMNGVLGMLQMLM-DTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEA 698
Query: 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKF 554
FD + L+E++ +FS + + +E + S+ +P+ V GDP R QI +NL+ NS+KF
Sbjct: 699 VAFDPRAILDEILSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKF 758
Query: 555 T-SSGHIII--------------------RGWCENLDTSKNTAE----FPT-DRKKFGRA 588
T GH+ + G N D S T + FP +R K
Sbjct: 759 THDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWAN 818
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
F+ E + L V+DTG GI +F F Q D ST+R +GGT
Sbjct: 819 FK--------QLSGINEPEIIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGT 870
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
G+GLSI + LV+ MGGEI V + G+
Sbjct: 871 GIGLSISKCLVDLMGGEIGFVSEPGIGS 898
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 39/162 (24%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+IL+ +D + + VA +L+K GA V+ V G A++ L +
Sbjct: 1084 QILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKML--------------------K 1123
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-----------------NIPIV 1053
P FD MD QMP+MDG+EAT +IR ESE + +IPI+
Sbjct: 1124 LPHN--FDACFMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPIL 1181
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
A+TA + + ++C+ GM+ Y++KP + E++ + R K+
Sbjct: 1182 AMTADSTQSSNEECIKCGMDDYVSKPFEEEKLYMAMARFFKS 1223
>gi|410632756|ref|ZP_11343407.1| signal transduction histidine-protein kinase BarA [Glaciecola
arctica BSs20135]
gi|410147621|dbj|GAC20274.1| signal transduction histidine-protein kinase BarA [Glaciecola
arctica BSs20135]
Length = 1047
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 160/278 (57%), Gaps = 41/278 (14%)
Query: 392 LTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKS 450
TNGV+ ++ + I+ L A +A+ ++ KS+FLANMSHE+RTP+ I+G+ ++L +
Sbjct: 499 FTNGVATSLRGAFQDITELKHAEEQAKEASRAKSEFLANMSHEIRTPINGILGMNDLLLN 558
Query: 451 DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF 510
+ N+++ +K SS++LL L+N ILD SK+E+GK+++E + +L L +++D
Sbjct: 559 SNLDENQRHFAQL-VKMSSHSLLHLINDILDFSKIEAGKLDIEIQDINLYALLGDIIDSM 617
Query: 511 SVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570
+ + + ++E VLD++ +PR ++ DP RV Q+ +NL++N+IKFT G +I+R ++
Sbjct: 618 AARAQDKHLELVLDIAPALPRWIKIDPYRVKQVLNNLLSNAIKFTEKGEVILR-----VE 672
Query: 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
++ N + F + DTG GI + K +
Sbjct: 673 STSNE----------------------------------LIKFTIIDTGEGIAEDKQTQL 698
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
F F Q D S TR+HGGTGLGL+I + L +MGG+I V
Sbjct: 699 FTQFMQVDSSNTRQHGGTGLGLAISKQLTERMGGQISV 736
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 21/138 (15%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ ED + Q + ++L+ + + +G EALN ML+ + GS
Sbjct: 922 ILIVEDNYINQQIVIEMLKSLDCDYHLAGNG---QEALN-MLSNHN--------GS---- 965
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
FDLILMDCQMP M+GY+AT IR +E + +NIPI+ALTA+AM D+ KC G
Sbjct: 966 -----FDLILMDCQMPLMNGYDATRHIRATEHQQFDKNIPIIALTANAMKGDDIKCFEAG 1020
Query: 1072 MNAYLTKPIDSERMVSTI 1089
MN YL+KP SE++ +
Sbjct: 1021 MNDYLSKPFLSEQLAEIL 1038
>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
Length = 1235
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 140/259 (54%), Gaps = 36/259 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++AR+KAE+++ KS FLA+MSHE+RTPM AIIGL +++ QL Q + ++ SS
Sbjct: 469 VEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKT-QLNKRQRDFMEKVLSSS 527
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL LN +LD SK+E+ K+ L+ T FD++ L + ++ + + VE +LD+ +
Sbjct: 528 DVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVELLLDIDQKV 587
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P GDP R+ QI NL +N++KFT G +II
Sbjct: 588 PFQWIGDPIRLGQILINLASNAVKFTEQGEVII--------------------------- 620
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
R KL +Q N R F V DTG GI+Q + +F F Q D S TRK+GGTG
Sbjct: 621 RVKLLEQHNQQSTLR--------FSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTG 672
Query: 650 LGLSIVRTLVNKMGGEIKV 668
LGL+I R L MGG I V
Sbjct: 673 LGLAISRQLTELMGGRIWV 691
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 31/189 (16%)
Query: 904 PGESSSRREDLIHTMFRER-HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQ 962
P ++S ++L+ F+E+ + + +R+ ++S S L ++L+ +D+ L +
Sbjct: 836 PVDASCIHDNLVEIFFQEKTSRTCAQKRELNLNNSLDLS----ALRDKKVLIVDDSILNR 891
Query: 963 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022
VA + L VG VS +G QA++ +N+ +DL+LM
Sbjct: 892 EVASEFLLDVGIQVSTANNGQQALDMINQY-----------------------HYDLVLM 928
Query: 1023 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS 1082
D QMP MDG AT ++RK+ + +PI+A+TAHA D ++ L GMN +L KPID
Sbjct: 929 DVQMPVMDGLTATKQLRKNPLH---KQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDH 985
Query: 1083 ERMVSTILR 1091
+ + T+ R
Sbjct: 986 QLLYLTVTR 994
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G+R L+ +D + + V IL +G V+ V DG ++ L +
Sbjct: 724 LKGMRALVVDDNAMAREVLADILTSLGLEVTTVADGYAGIDELEK--------------A 769
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+TP +D++ +D +P ++G E +I + + H + ++ +TA+ ++ E
Sbjct: 770 CSKQTP----YDVVFLDWNIPGINGVETASKIER--NVHITKPAAMLMVTAYDVDKFESD 823
Query: 1067 CLGVGMNAYLTKPIDS 1082
V + ++KP+D+
Sbjct: 824 AHNVNIKKIISKPVDA 839
>gi|451980027|ref|ZP_21928427.1| putative Multi-sensor hybrid histidine kinase [Nitrospina gracilis
3/211]
gi|451762718|emb|CCQ89649.1| putative Multi-sensor hybrid histidine kinase [Nitrospina gracilis
3/211]
Length = 1661
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 33/273 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+ A+ +A ++N KS+FLANMSHE+RTPM AI+GL L +++ +Q + +I+KS
Sbjct: 882 MQAQTEAISANEAKSRFLANMSHEIRTPMNAILGLAH-LALQNEMPPKQKGYLEKIEKSG 940
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL ++N ILD SKVE+GK++LE F++++ LE + + E V S +
Sbjct: 941 QNLLGIINDILDFSKVEAGKLDLEMIPFEIRETLEHISQQQTYFAEECETELVFFCSPMV 1000
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P V GDP RV Q+ +NL++N++KFTS G + A
Sbjct: 1001 PGRVIGDPLRVAQVLTNLVSNALKFTSKGTV---------------------------AV 1033
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
T L + N + N++ L F V DTG G+ + + + VF +F Q D STTRK+GGTG
Sbjct: 1034 YTDLVESPNA-----KQNRVELKFVVQDTGIGMAEDQIQGVFGAFTQADASTTRKYGGTG 1088
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGL+I R LV M G I V + GT + L
Sbjct: 1089 LGLAITRQLVGLMRGRIHVESEPGEGTTFTVAL 1121
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 33/189 (17%)
Query: 913 DLIHTMFRERH-QIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEK 971
D++ ++F + Q+ S +P S+ + ++ G R+L+AED + Q V ++L+K
Sbjct: 1258 DMVTSLFYNKDSQMMRSAACKPESAFDPTT-----FHGCRVLVAEDNEINQEVVEELLQK 1312
Query: 972 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031
VG V++V +G AV+ L+ + FD++LMD QMP MDG
Sbjct: 1313 VGFDVTIVDNGKAAVDRLS-----------------------SEEFDMVLMDLQMPVMDG 1349
Query: 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
EA +IR+ + ++P++ALTA+AM D ++ GMN ++TKPID E M T+ R
Sbjct: 1350 LEAARQIRQDKK---FESLPVIALTANAMTGDRERTAEAGMNDHVTKPIDPESMYKTLSR 1406
Query: 1092 LTKNMPSEA 1100
K+ P+ A
Sbjct: 1407 WIKS-PARA 1414
>gi|408418122|ref|YP_006759536.1| two component system sensor kinase, hybrid [Desulfobacula toluolica
Tol2]
gi|405105335|emb|CCK78832.1| two component system sensor kinase, hybrid [Desulfobacula toluolica
Tol2]
Length = 1205
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 153/266 (57%), Gaps = 30/266 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE-ILKSDDQLTNEQYSTVCQIKKSSY 470
A AE +N KS+FLA MSHE+RTPM A+IG+ E +LK+ L EQ + + +SS
Sbjct: 665 ASEVAEQANLAKSRFLATMSHEIRTPMNAVIGMTEMVLKT--TLNKEQKKYLEVVYQSSE 722
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL L++ ILD+S +E+ K++LEN FDL K ++++V MFS + N++ + + +P
Sbjct: 723 HLLALIDDILDISAIEAKKIDLENRPFDLNKLIKDVVSMFSNKADQQNIKLSYSIQE-VP 781
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GD R+ QI NLINN++KFT G I I+ + ++NT+ P + +K
Sbjct: 782 VYLNGDASRMRQILVNLINNAVKFTPKGSIQIKAAYDR--DAENTSSDPLNPEK------ 833
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ L F + DTG GI + K++ +F+ F Q + S +R +GGTGL
Sbjct: 834 ------------------IKLLFSIKDTGIGIPEDKFDHIFKDFIQLESSLSRTYGGTGL 875
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL+I + LV MGG+I V + S GT
Sbjct: 876 GLAICKKLVILMGGDIWVESELSKGT 901
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 24/146 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+ ILLAED + Q V ILEK G V++V +G QA++A+
Sbjct: 949 LKKCHILLAEDFEINQEVITPILEKHGFLVTIVINGEQALQAVQE--------------- 993
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDLILMD QMP MDG EAT++IR + A +IPI+ALTAHA+ D ++
Sbjct: 994 --------KSFDLILMDVQMPVMDGLEATLKIRNLKDPLKA-SIPIIALTAHALKGDRER 1044
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRL 1092
L GM+ YL+KP+ S ++ I +L
Sbjct: 1045 FLKAGMDEYLSKPVHSNELIRVISKL 1070
>gi|407699007|ref|YP_006823794.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407248154|gb|AFT77339.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 959
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 143/280 (51%), Gaps = 36/280 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR KAE S KS FLA+MSHE+RTP+ I G+L+++ S +L+ EQ + K S
Sbjct: 565 EAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLMASS-ELSEEQKHYLSLAKFSIQ 623
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N ILD SK+E+G++++E FD+ + LE L +++ C +E
Sbjct: 624 GLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAIMCQEKGLELHFHFDLQGY 683
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V+GD R QI SNL+ N++KFT +GHI +
Sbjct: 684 HVVQGDDVRFRQILSNLLGNAVKFTDTGHIEV---------------------------T 716
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
T +K+ A D L L V DTG GI Q K T+F+ F Q D STTRK GGTGL
Sbjct: 717 TSIKKNA--------DGTLTLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGL 768
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
GLSI + L MGG I + G+ + L + E+
Sbjct: 769 GLSISKQLCELMGGSITLESVKGHGSTFTFTISLEEADEA 808
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 27/141 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + QI+ + L T GL+A+EALN+M
Sbjct: 828 KVLIVEDNDINQIIVKQHLSN--HTTLSAKSGLEALEALNKMKVT--------------- 870
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR--NIPIVALTAHAMNADEKKCL 1068
FD+ILMDCQMP+MDG+EAT IR E+ GAR ++PI+ALTA+AM D+++C+
Sbjct: 871 ------FDVILMDCQMPEMDGFEATQRIRNGEA--GARYLDVPIIALTANAMKGDKERCV 922
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KP D+ ++ +
Sbjct: 923 NAGMDDYLSKPFDAADLIDKV 943
>gi|428225087|ref|YP_007109184.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427984988|gb|AFY66132.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1764
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 29/264 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
++++AEA+N KS+FLA MSHE+RTPM A+IG+ +L D L +Q V I+ S A
Sbjct: 1059 SKQEAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLL-DTPLNAQQRDFVETIRFSGDA 1117
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ELEN FDL+ +EE++D+ + ++E + P
Sbjct: 1118 LLTIINDILDFSKIESGKLELENHPFDLRTCIEEVIDLMVPRAVEKDLELAYLVDSQSPT 1177
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
GD R+ QI NL+ N+IKFT+ G +++ LD
Sbjct: 1178 QFVGDVTRLRQILVNLMGNAIKFTTVGEVVLTVMARPLD--------------------- 1216
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
A+ ++ L F V DTG GI + +F+ F Q D STTR++GGTGLG
Sbjct: 1217 -------EAIAADGSSRYTLQFAVKDTGIGIAPDAMDRLFKPFSQADASTTREYGGTGLG 1269
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L I + L MGG + V + G
Sbjct: 1270 LVISQRLSQMMGGTLWVESRGKIG 1293
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 28/143 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAEDT + Q VA +L+K+G V +G++ + AL R
Sbjct: 1504 LRILLAEDTVVNQKVALLMLQKMGYRADVAGNGIEVLAALKRQ----------------- 1546
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+DLILMD QMP+MDG E T IR+ E G+ N P IVA+TA+AM D ++CL
Sbjct: 1547 ------PYDLILMDVQMPEMDGLETTRRIRQGE---GSDNQPWIVAMTANAMRGDREQCL 1597
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GM+ Y++KP+ + + T LR
Sbjct: 1598 AAGMDDYISKPVHIQEL-ETALR 1619
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRK-SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FD+ ++D QMP+MDG + +R+ + EH IP++ LT+ + + A
Sbjct: 1404 FDIAILDMQMPEMDGLSLAVTMRRYGQCEH----IPLLMLTSLGQLQECHQSSEARFAAC 1459
Query: 1076 LTKPIDSERMVSTILRLTKNMPSEA 1100
L+KP+ ++ + N P +A
Sbjct: 1460 LSKPVKQSQLYEALALALSNQPIKA 1484
>gi|164657947|ref|XP_001730099.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
gi|159103994|gb|EDP42885.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966]
Length = 1333
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 146/265 (55%), Gaps = 34/265 (12%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ L + +L+ Q
Sbjct: 774 LRDSIQKNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTS-LTLETELSRTQREN 832
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + LL +++ ILD+SK+E+G+M +E F L+ + ++ SV+ + +
Sbjct: 833 LVTVSTLASNLLAIIDDILDISKIEAGRMNIEEIPFSLRGIVFSVLKTLSVRAAQKKLNL 892
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
V +++ N+P + GD R+ QI +NLI N++KFT SG I+
Sbjct: 893 VYEVAPNVPDPLIGDALRLKQIITNLIGNAVKFTESGGIV-------------------- 932
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
A R KL N+A E L F D+G GI Q K + +F++F Q D ST
Sbjct: 933 ------ALRCKL----NSAPGAPET---VLEFCASDSGIGIKQDKLDMIFDTFCQADGST 979
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEI 666
TRK+GGTGLGLSI R LVN MGG++
Sbjct: 980 TRKYGGTGLGLSISRRLVNLMGGDM 1004
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 89/173 (51%), Gaps = 34/173 (19%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P N+SS ILLAED + Q +ACKIL+ G V VV +G QAV+A +
Sbjct: 1159 PSEGGNNSS--------YHILLAEDNLVNQKLACKILQNQGHKVDVVDNGEQAVQATEQC 1210
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
++D+ILMD MP M G EAT+ IR E +IPI
Sbjct: 1211 -----------------------KYDVILMDVSMPVMGGIEATMAIRDREDSQNLEHIPI 1247
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST---ILRLTKNMPSEATG 1102
VALTAHAM D++KCL GMNAY++KPI +VST IL PS +G
Sbjct: 1248 VALTAHAMLGDKEKCLQAGMNAYVSKPIRRVELVSTLNQILSQKSEPPSNDSG 1300
>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1493
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 150/258 (58%), Gaps = 22/258 (8%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE ++ KS+FLA MSHE+RTPM A+IG+ +L D +LT EQ V I+ S
Sbjct: 720 EAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DMELTPEQRDFVETIRTSGD 778
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK+ELE F L+ LEE +++ S + +E + + P
Sbjct: 779 ALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTP 838
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ + D R+ Q+ NL++N+IKFTS G +I+ + D K D KK
Sbjct: 839 KTILVDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKK-------DVKK------ 885
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ +F E + + L FEV DTG GI + + +F++F Q D STTR++GGTGL
Sbjct: 886 -------SDDSDFTESHYV-LQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGL 937
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L M G++ V
Sbjct: 938 GLAISQRLSQLMNGKMWV 955
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 26/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED Q VA K+L+++G + +GL+ ++ALNR
Sbjct: 1179 LRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALNRQ----------------- 1221
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEI---RKSESEHGARNIPIVALTAHAMNADEKK 1066
++D+ILMD QMP+MDG EA+ I S+ G R I+A+TA+AM D +
Sbjct: 1222 ------QYDVILMDVQMPEMDGLEASKHICAAYSDGSDMGPRKPRIIAMTANAMQGDREM 1275
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ Y+TKP+ E + + +
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
[Synechococcus sp. PCC 7002]
gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
[Synechococcus sp. PCC 7002]
Length = 1076
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 150/315 (47%), Gaps = 45/315 (14%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
S FLA MSHE+RTPM IIG+L +L + LT EQ S+ +LL LLN ILD S
Sbjct: 553 SMFLATMSHEIRTPMNGIIGMLNLLLYSEGLTTEQQEHAHIALSSAESLLMLLNDILDFS 612
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K+E+GK++LE +FDL + E + + + + DL +++GDPGR+ QI
Sbjct: 613 KMEAGKLQLETVDFDLHQFFENFAKLMAFAAQEKGLNLIFDLRGLRHGSIQGDPGRLRQI 672
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
+NL++N+IKFT+ G ++IR E
Sbjct: 673 LTNLVSNAIKFTNQGEVMIRCQTE------------------------------------ 696
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
R ++L V DTG GI K +FE F Q + TTR++GGTGLGL+I + L MG
Sbjct: 697 RVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAITQRLCQVMG 756
Query: 664 GEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKK 723
G I+V+ G+ L GA AD ++ +E +I+ + ++
Sbjct: 757 GTIEVISTPGEGSCFTFTLGYGAGRSQLSRMTAD---------SLQGLEILIVEEQQTQR 807
Query: 724 KVSTLETSEWHGLTQ 738
++ E W Q
Sbjct: 808 EILRDELQAWGATVQ 822
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P S S S++++ R+LL ED P+ QI+ + ++ G +V V P G +A++
Sbjct: 928 PDSGSQPSASKQGQKISARLLLVEDNPVNQIIIRGLCQQFGFSVDVAPGGTEALQ----- 982
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052
+LQ +P P + LILMDC MPKM+G++ + IR+ R IPI
Sbjct: 983 ----------MLQATPENQP----YRLILMDCLMPKMNGFQTSQHIRRGGGGDRHRQIPI 1028
Query: 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ALT A++++ L GMN YL+KP++ + + T+
Sbjct: 1029 IALTTTLGEANQEQYLAAGMNDYLSKPLNPQTLRETL 1065
>gi|386829361|ref|ZP_10116468.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386430245|gb|EIJ44073.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 611
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 148/272 (54%), Gaps = 47/272 (17%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ AE +N KS+FLANMSHELRTP+ I+G +IL+ D LT +Q + I++S
Sbjct: 147 NAKESAETANRAKSRFLANMSHELRTPLNGILGYAQILRHDSNLTPQQQEGINIIQRSGE 206
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDL----- 525
LL L+N ILDLSK+E+ +MEL ++F L++ L +VD+F ++ ++ + D
Sbjct: 207 YLLTLINDILDLSKIEADRMELYQSDFSLEQFLNNVVDLFRMRAEQKDIRFIYDSPFVRK 266
Query: 526 -SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 584
+ +P +RGD R+ QI NL+ N+IKFT G +I
Sbjct: 267 EKNALPTAIRGDEKRLRQILINLLGNAIKFTEKGQVI----------------------- 303
Query: 585 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
FR + +E +K +CF V+DTG GI +K E VF F+Q S ++
Sbjct: 304 ----FRVE-----------KEHDK--ICFSVEDTGIGIPSNKLEEVFLPFQQIG-SHNQQ 345
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
GTGLGLSI LVN MGG++++ + G+
Sbjct: 346 MEGTGLGLSISNRLVNMMGGKLQITSQLGQGS 377
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 34/158 (21%)
Query: 940 SSNQKRILEGL--------RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNR 991
S NQ IL + ++L+ +D Q+V +L+ +G +S G +A+E
Sbjct: 392 SDNQPSILPKITGYEGQQRKVLIVDDQKFNQLVCKHLLQPLGFEISHAYTGQEAIEKTQE 451
Query: 992 MLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051
+ + D+ILMD MP+MDG+ T IRK A +I
Sbjct: 452 L-----------------------KPDVILMDLVMPEMDGFTTTERIRKLPI---ASDIT 485
Query: 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
I+A +A A + D+++ L G + ++ KPI ++ ++ +
Sbjct: 486 IIAASASAFSQDQQRSLASGCDDFIAKPIKADELLKKL 523
>gi|428213830|ref|YP_007086974.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002211|gb|AFY83054.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1249
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 210/450 (46%), Gaps = 71/450 (15%)
Query: 234 IVAVVGVTTALSSVGQLMKELVEVHS-GHIYLTSQEGYLLATSTNAPLLTNSSTGPNLV- 291
++ + G + ++ + Q +L+E + L S E ++AT +LT ++ L+
Sbjct: 600 VIGITGTASNITQLKQTQAKLIETNRLQKAILNSAEHTIIATDPQGTILTFNAAAERLLG 659
Query: 292 ----KAVDSDNPVI-------QMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMDTFF 340
+ N VI Q A L +E G V PG V A+LG
Sbjct: 660 YKAHEVTTQANVVIIHTREELQERADTLTAELGYAVAPGFDAIVAKARLG---------- 709
Query: 341 LNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVSKEM 400
+P + RE+ + D + + +S + IG I + G+ ++
Sbjct: 710 -----VPDI------REWTYLRKDGSRFP---VWLSITALQDAIGQITGFL---GIGSDI 752
Query: 401 KLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
R + L A A+ +N+ KS+FLANMSHELRTP+ AI+G +++ D L E
Sbjct: 753 TDRKQAEEALKQAAIAAQMANHAKSEFLANMSHELRTPLNAILGFAQVMAGDPSLHPEHQ 812
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
+ I ++ LL L+N IL++SK+E+G+ L+ FDL + L +L DM + N+
Sbjct: 813 QQIEIINRAGSHLLELINDILEMSKIEAGRTTLKIEPFDLGQMLRDLEDMLQFKAHEKNL 872
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
+++ N+P +R D ++ Q+ N++ N+IKFT G I +R + + EF
Sbjct: 873 LLSTEVTPNVPLYIRADQAKLRQVLINILGNAIKFTQRGAITLR-------VHRGSGEF- 924
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
++G N R+ + L FEV+DTG GI + +FESF G
Sbjct: 925 ----EWG---------------NHRDYSTEFLQFEVEDTGPGIAPEEMNLIFESF--GQT 963
Query: 640 STTRKHG-GTGLGLSIVRTLVNKMGGEIKV 668
T RK G GTGLGL I R V MGGEI+V
Sbjct: 964 ETGRKSGQGTGLGLPISRQFVRMMGGEIQV 993
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D +++ K+L +G V +G +A+ + LQ P
Sbjct: 1037 RILVVDDMLESRLLLVKLLGSIGFEVREAENGQEAIA--------------TSLQWQP-- 1080
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
DLILMD +MP MDGYEAT +I+ H I+ALTA D
Sbjct: 1081 -------DLILMDIRMPIMDGYEATKQIKAIVGSHKP---AILALTASVFEEDRSAVFAA 1130
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + +L KP++ + ++ I
Sbjct: 1131 GCDDFLRKPLEKDELLEKI 1149
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 26/138 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ +DT + +L G V P+GL A++A+ +
Sbjct: 13 VLVVDDTVANLKLLVDLLSGHGYKVRAAPNGLLALQAVEVSIP----------------- 55
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
DLIL+D MP ++GY+ ++ E R IPI+ ++A D+ + VG
Sbjct: 56 ------DLILLDIMMPDLNGYDVCKHLKSHEE---TRPIPIIFISALYETFDKVRGFAVG 106
Query: 1072 MNAYLTKPIDSERMVSTI 1089
+ Y+TKP +++ I
Sbjct: 107 GSDYITKPFQEAEVLARI 124
>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
Length = 1947
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 189/371 (50%), Gaps = 65/371 (17%)
Query: 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLR 474
A+ +N KS FLANMSHE+RTPM AIIG+ + L++D LT++Q + + ++ +S+ +LL
Sbjct: 1211 ADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTD--LTSKQRNYIEKVHRSAESLLG 1268
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+GK+++E +F L ++ LV + ++ +H +E +LD+ ++P +
Sbjct: 1269 IINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGLELLLDVPPDLPTALI 1328
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GDP R+ QI NL NN++KFT G +++
Sbjct: 1329 GDPLRLSQILINLGNNAVKFTEDGEVVV----------------------------AVRV 1360
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
++ +NA ++ + F V D+G G+++ + +F+SF Q D STTRK+GGTGLGL+I
Sbjct: 1361 EEESNA-------EVRMHFSVRDSGIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAI 1413
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERM 714
+ LV M GEI V + G+ Q A E +Q + P V +G + +
Sbjct: 1414 SKQLVAMMDGEIWVESEPGVGSDFQFT----ACFEKQQ---GEIPEPTVAPDDLGPLPIL 1466
Query: 715 IISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKA 774
++ Q RE+L I + S GF +S EM
Sbjct: 1467 VVDD------------------NQSAREILAAI--LESLGFQIKTASGGRQAVEMIKAAD 1506
Query: 775 LIDPVYVVVID 785
+P +V++D
Sbjct: 1507 ADEPFKLVMLD 1517
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G ++LL ED + Q +A +IL G TV V +G +A++ ++AA
Sbjct: 1609 LRGAQVLLVEDNEINQELAVEILTTHGMTVQVANNGQEALD----LIAAH---------- 1654
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+FD +LMDCQMP MDGYEAT IR + + +++P++A+TA+AM D++K
Sbjct: 1655 ---------QFDGVLMDCQMPVMDGYEATRHIRNNPA---TKDLPVLAMTANAMVGDKEK 1702
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
+ GMN ++ KPI+ + T+ +
Sbjct: 1703 VIEAGMNDHIAKPINLADLFKTMAK 1727
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 23/143 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL+ +D + + ILE +G + G QAVE +++ + +
Sbjct: 1463 LPILVVDDNQSAREILAAILESLGFQIKTASGGRQAVE---------------MIKAADA 1507
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+ P F L+++D +MP +DG + I++ + +N P I+ +TA ++
Sbjct: 1508 DEP----FKLVMLDWRMPGLDGVQTGQLIQEDTT---LKNQPKIIMITAFGREEMQEGAG 1560
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
G+ ++ +LTKP + ++ I+R
Sbjct: 1561 GLAISGFLTKPATASSLLDEIMR 1583
>gi|428769178|ref|YP_007160968.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683457|gb|AFZ52924.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 899
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 141/534 (26%), Positives = 238/534 (44%), Gaps = 100/534 (18%)
Query: 203 ASW-HVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGH 261
A+W V + + T +SA +P+++ + V+ LS + +K+L +G
Sbjct: 172 ATWSDVFIYQGTPRLAISAVVPIYN---QENQLEGVLFSDLLLSLISNFLKDLSVSKTGE 228
Query: 262 IYLTSQEGYLLATSTNAPLLTNSSTG------PNLVKAVDSDNPVIQMGAQWLQSEYGS- 314
I + YL+A+S P + + P + +S + I+ + + ++ S
Sbjct: 229 IIIVDDNNYLVASSLEKPFIITNPDAKKIEQQPERISLENSQHEKIRQLSTNINKKFSSL 288
Query: 315 -KVPPGHVIHVQNAKLGHKQYYMDTF-FLNLKRLPIVGVIIIPREYIMGKADERA----- 367
+ V KL ++ Y++ F + N P +I+IP++ ++G +
Sbjct: 289 NNLKESQFWQV---KLDNQYYFIQAFPYNNYLTKPWYILILIPKQDLVGDIEANTKLTII 345
Query: 368 ------------------YKTLIILI------------SASVCILV----IGCICILI-- 391
Y T IL+ S IL +G + I
Sbjct: 346 IWFFILLIALFLALWTTNYITKPILLLDRALSNFQKGNHQSPIILKRRDELGHLAIAFNE 405
Query: 392 -------LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL 444
L + +++K R + +S +A+ KAE +N KS+FLANMSHELRTP+ AI+G
Sbjct: 406 MTNEIQELVQNLEEKVKDRTKELS--EAKDKAEVANQAKSEFLANMSHELRTPLNAILGF 463
Query: 445 LEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504
+I++ L E ++ I +S LL L+N ILDLSK+E+GK+ L DL K L+
Sbjct: 464 AQIMRKSPTLPEEHQESIEIINRSGEHLLTLINNILDLSKIEAGKITLNKENIDLYKLLD 523
Query: 505 ELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
E+ D+F + + + + DN+P+ ++ D ++ QI NL++N+IKFT G + ++G
Sbjct: 524 EIEDIFKYKAEKKGIHLIFEKLDNLPQFIKTDAPKLRQIIINLVSNAIKFTEEGGVSLQG 583
Query: 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
L+ + + K+ L F + DTG GI
Sbjct: 584 TINKLNNN---------------------------------EKKVELLFIIRDTGKGIKH 610
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
+ T+F+ F Q S + GTGLGLSI + V MGG IKV + + GT+
Sbjct: 611 QELATLFQPFTQT-KSGKEVNEGTGLGLSISKKFVELMGGNIKVSSEENVGTIF 663
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP MDGYEAT +I K ++ A I+A+TA + ++ L G + ++ K
Sbjct: 742 LIFMDMRMPVMDGYEAT-KIIKGTTKGNAT--AIIAVTASVLEEEKAIILSAGCDDFVRK 798
Query: 1079 PIDSERMVSTI 1089
P E + S +
Sbjct: 799 PFRQETIFSML 809
>gi|442610467|ref|ZP_21025189.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441747989|emb|CCQ11251.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 916
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 150/272 (55%), Gaps = 36/272 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A+ +AE ++ K+ FLA MSHE+RTPM ++G+L +L ++ L+ Q V S++
Sbjct: 402 EAKEQAEHASMAKADFLATMSHEIRTPMNGVLGMLSLL-GEEPLSETQAQQVEVASSSAH 460
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
L+R++N ILD SK+ESGK+EL+ T FDL K ++E +++ +VE +LD ++
Sbjct: 461 LLMRIINDILDFSKIESGKLELDITHFDLIKLMKETCSSQALRAHEKSVELILDTTELTI 520
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ V D R+ QI +NLI N+IKFT G +I+ + KNTA
Sbjct: 521 QFVNSDTVRIQQIVTNLIGNAIKFTKQGEVIV--------SLKNTA-------------- 558
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ L V D+G GI +K + +FE F Q D STTR+ GGTGL
Sbjct: 559 -------------TSGSQCELLISVKDSGIGIAANKLDVIFEQFSQADSSTTRQFGGTGL 605
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
GLSIVR L + +GG+I V + G+ + L
Sbjct: 606 GLSIVRRLCDLLGGKIWVESEIGLGSTFNVLL 637
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 89/141 (63%), Gaps = 21/141 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+IL+ +DTP+ Q+V K+L + ++ +G EA+N++L AE
Sbjct: 790 KILVVDDTPVNQLVVSKMLASLNTEIAFAANG---EEAINKLLEAE-------------- 832
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+TP FDLILMDC MP MDGYEAT +IR +++I IVA+TA+AM+ D++KCL V
Sbjct: 833 --NTP-FDLILMDCLMPVMDGYEATKQIRAGRVPQ-SQDITIVAMTANAMSGDKEKCLAV 888
Query: 1071 GMNAYLTKPIDSERMVSTILR 1091
GMN Y++KPI+ + ++ T+ R
Sbjct: 889 GMNDYVSKPINKDVLIETVHR 909
>gi|337750279|ref|YP_004644441.1| sensor histidine kinase [Paenibacillus mucilaginosus KNP414]
gi|336301468|gb|AEI44571.1| sensor histidine kinase [Paenibacillus mucilaginosus KNP414]
Length = 1388
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 149/285 (52%), Gaps = 32/285 (11%)
Query: 408 SHLDARRKAEA---SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTV 462
S + +KAE ++ YKS+FLANMSHELRTP+ +++ L + L ++D+ LT +Q +
Sbjct: 677 SKTELEKKAEELALASRYKSEFLANMSHELRTPLNSLLILAKSLAANDEGNLTEDQIESA 736
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
I LL L+N ILDLSKVE+GKM++ E L L L + F +
Sbjct: 737 KIIHSGGLDLLTLINDILDLSKVEAGKMDIHREEVRLAGMLRHLQNQFGHVAQEKGLVFK 796
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582
L+L+ +P + D R QI NL++N+ KFTS G + +R + T
Sbjct: 797 LELAPGLPETIVTDSQRAEQILKNLLSNAFKFTSQGSVSVRIYAPGPGT----------- 845
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
R F L + A+ EV DTG GI K +FE+F+Q D ST+
Sbjct: 846 ----RFFSGALVPEETVAL------------EVRDTGIGIPAGKQRAIFEAFQQADGSTS 889
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
R++GGTGLGL+I R L +GGEI++ + G++ LYL G S
Sbjct: 890 RQYGGTGLGLTISRELARLLGGEIQLQSREGEGSVFTLYLPAGGS 934
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G +ILL +D K+L + G V + +G A+E L
Sbjct: 1265 LKGRKILLVDDDLRNTFALSKVLRQHGLNVVMADNGKLALEKL----------------- 1307
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
E+ D +L++MD MP MDGYEA IR + +H A +PI+ALTA AM D +K
Sbjct: 1308 ---ESEDG--VELVIMDIMMPVMDGYEAMKRIR-ANPKHAA--LPIIALTAKAMAGDREK 1359
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+ G N Y+TKP+D+++++S I
Sbjct: 1360 SIEGGANDYMTKPVDTDKLLSLI 1382
>gi|427421170|ref|ZP_18911353.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757047|gb|EKU97901.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 911
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 145/268 (54%), Gaps = 24/268 (8%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
+L+ L+ AR +A A+ KS FLANMSHE+RTPM I+G+ +L D LT EQ +
Sbjct: 246 QLQGNLVGLAIARDEALAAAQSKSDFLANMSHEIRTPMNGILGMSGLLL-DTNLTQEQRN 304
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
I +L+ ++N ILD SK+ESGK+++E F+L+ +EE +D+ + + + N+E
Sbjct: 305 FSETIWNCCNSLITIINDILDFSKIESGKLDMEECPFELRTCIEESLDLLATKAAEKNLE 364
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
IP + GD R+ QI NL+ N+IKFT G I+++
Sbjct: 365 LAYLAEPGIPDRLVGDVTRLRQILVNLVGNAIKFTHEGEILVK----------------V 408
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
K F +T + Q E + + + F+V DTG GI K +F+SF Q D S
Sbjct: 409 HTKPFTVVSQTHIDQDI-------EKDYVTIHFDVQDTGIGIPTDKMNRLFKSFSQVDSS 461
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
T RK+GGTGLGL+I + L MGG + V
Sbjct: 462 TARKYGGTGLGLAISKQLCELMGGNMSV 489
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 25/140 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED + Q + + L K+G +V +G +A++AL R
Sbjct: 674 LRILVAEDNLVNQQLIRQWLGKMGYRPDLVGNGYEAIDALKRQ----------------- 716
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD MP+MDG AT EI K S + I+ALTA+AM D ++CL
Sbjct: 717 ------TYDVVLMDVHMPEMDGLTATAEICKQWSVD--KRPYIIALTANAMKGDRERCLN 768
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GMN Y++KPI +V +
Sbjct: 769 AGMNNYISKPIHVPDLVKAL 788
>gi|411120737|ref|ZP_11393109.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709406|gb|EKQ66921.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1202
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 153/274 (55%), Gaps = 35/274 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE SN KS+FLANMSHELRTP+ AI+G +++ + Y + I +S
Sbjct: 704 AKEAAELSNRAKSEFLANMSHELRTPLNAILGFTQVVMRECVSNQVIYEYLEIINRSGEH 763
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +L++S++E+GK+ L ++FDL L+ L DM ++ + +++ + ++ ++P+
Sbjct: 764 LLNLINDVLEMSRIEAGKVALNISDFDLHYLLKNLEDMLRLKADSKDLDLICEIDPDVPQ 823
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+GD G++ Q+ N++ N+IKFT+ G + +R R+
Sbjct: 824 YVQGDEGKLRQVLINILGNAIKFTTEGGVALR-------------------------VRS 858
Query: 592 KLKQQANNAMNFREDNK-----LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
++ Q N +E++K L FEV+DTG GI + ET+FE F Q H
Sbjct: 859 QVSQNDNG----QEEDKGTVEETTLFFEVEDTGPGIAPDEVETIFEPFVQARREGVL-HE 913
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GTGLGLSI RT V MGG+I++ + GTL+Q
Sbjct: 914 GTGLGLSISRTFVQLMGGDIRIHSIPNQGTLVQF 947
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 979 VPDGLQAVEALNRMLAAESSRRRSLLQGSPS--ETPDTPRFDLILMDCQMPKMDGYEATI 1036
+PD LQ L R+L+ + + R G + + TP DLIL+D QMP MDGY+
Sbjct: 19 IPDNLQL---LARVLSKQDYQVRLAANGEEALLDVQLTPP-DLILLDIQMPGMDGYQVCE 74
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+++ +E R+IP++ L+ D+ K +G ++TKP ++ +++ I
Sbjct: 75 KLKSNEQ---TRHIPVIFLSVAQETDDKVKAFAIGAADFVTKPFATQELLARI 124
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGAR----NIPIVALTAHAMNADEKKCLGVGMNA 1074
LI MD +MP MDGYEAT +IR E++ G I+ALTA A D + L VG
Sbjct: 1024 LIWMDIRMPVMDGYEATQKIRAMEADRGETGSEPKTVIIALTASAFEEDRARALEVGCTD 1083
Query: 1075 YLTKPI 1080
++ KP
Sbjct: 1084 FVGKPF 1089
>gi|381160225|ref|ZP_09869457.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878289|gb|EIC20381.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1200
Score = 163 bits (412), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 135/254 (53%), Gaps = 28/254 (11%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTP+ AI+GL ++L L Q + + K +S +LL ++N ILD
Sbjct: 436 KSGFLANMSHEIRTPLNAIMGLTDLLLRG-TLEERQREFLTKTKLASKSLLAVINDILDF 494
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G +E+E T+F L + + L +MF+ + VE V+ ++ P + GDP R+ Q
Sbjct: 495 SKIEAGHLEIEQTDFSLHELIANLSEMFAYRAHEKGVELVVAIAPGTPTELIGDPTRLSQ 554
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NL N++KFT G + I + + E P
Sbjct: 555 ILINLTGNALKFTQQGEVQITADLAQTSGTPGSEEAP----------------------- 591
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
+ + L +V DTG GI + + +FE+F Q D S TR+HGGTGLGL+I R L + M
Sbjct: 592 ----DTVKLRLQVRDTGPGIAPERLDAIFEAFAQADGSVTRRHGGTGLGLAICRRLAHLM 647
Query: 663 GGEIKVVKKNSPGT 676
GG++ V G+
Sbjct: 648 GGDVTVASVPGQGS 661
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 29/179 (16%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972
D I ++F + S+R P + +S Q L G R+LL ED + ++VA + LE
Sbjct: 803 DTIVSLFGHQDAAASTR---PVLLAEASDRQPPDLSGQRVLLVEDIEMNRLVALEWLEAA 859
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032
+ +GL EALN++ R + ++ +LMD QMP++DG
Sbjct: 860 RLDTDIAENGL---EALNKV------RENT--------------YNAVLMDIQMPELDGL 896
Query: 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
EAT IR +E R++PI+A+TAHA+ D ++CL GM+ YL+KPID ++ + R
Sbjct: 897 EATRRIR---AEFPDRHLPIIAMTAHALKGDMERCLAAGMDDYLSKPIDPAQLFGALER 952
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 27/160 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GLR+L+ ED + + +E V G EALN++
Sbjct: 686 LRGLRVLVVEDNATSREMLVAQIESFHMRAVAVASG---EEALNQL-------------A 729
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL-TAHAMNADEK 1065
P+++ FDL+L+D +MP ++G E + IR+ + + P+V + +A+A +
Sbjct: 730 DPAQS-----FDLVLLDWKMPGLNGLETAVRIRQ---DLKLPHTPMVCMISAYAREDLLQ 781
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
+ ++A+L KP++ + TI+ L + +A +TR
Sbjct: 782 QSERSVLDAFLHKPVNQSFLFDTIVSLFGH--QDAAASTR 819
>gi|428770084|ref|YP_007161874.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
gi|428684363|gb|AFZ53830.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
Length = 765
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 141/264 (53%), Gaps = 32/264 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ KAE KS+FLANMSHE+RTPM +IG+ ++L S L EQ + V I S
Sbjct: 364 AKEKAEIVAKAKSEFLANMSHEIRTPMNGVIGMAQLL-SLTHLNEEQQTYVHTIIDSGET 422
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESG ++LE F ++ ++ ++++ S Q +N+ ++ IP
Sbjct: 423 LLTIINDILDFSKIESGNLQLEERPFAFREIIKTIINLLSPQAEKNNIRISCFIAPQIPS 482
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ GD R QI NL+ NSIKFT G I I +N+ + + E+
Sbjct: 483 NLLGDSIRFRQILLNLMGNSIKFTHVGSIKIYADIKNVYSQQGWQEYE------------ 530
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ V+DTG GI++ + +F+ F Q D S TRK+GGTGLG
Sbjct: 531 -------------------IMIRVEDTGVGIERDRLSYLFQPFSQADNSITRKYGGTGLG 571
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPG 675
L+I +TL+N MGG I V + G
Sbjct: 572 LAISKTLINLMGGTIWVESNGNIG 595
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 27/143 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED + Q V L+K+G + + +GL E LN++
Sbjct: 648 LQILLAEDNLVNQKVTLSFLKKLGYSADIAKNGL---EVLNKI----------------- 687
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ +D+ILMD QMP+MDG T +IR E + I+ALTA+A++ D++ CL
Sbjct: 688 ---ENKTYDIILMDVQMPEMDGLTTTKKIR----EMSIKQPFIIALTANALDQDQQMCLF 740
Query: 1070 VGMNAYLTKPIDSERMVSTILRL 1092
GMN Y+ KP+ + IL++
Sbjct: 741 AGMNDYIRKPVKINELNQAILKI 763
>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
marina MBIC11017]
Length = 834
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 150/271 (55%), Gaps = 36/271 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+KA+ +N KS+FLA+MSHELRTP+ AI+G +++ D ++ +Q +T+ I +S
Sbjct: 360 ARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQAISTQQQNTLQIINRSGEH 419
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LD+SK+E+G+ L +F+L L+ L DMF+++ + ++ L L D++P+
Sbjct: 420 LLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALKLDDHLPQ 479
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD ++ Q+ NLI N+IKFT +G + I G A +T
Sbjct: 480 FIHGDESKLRQVLINLIGNAIKFTEAGEVSITA---------------------GMAEQT 518
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
D +L+L F V+D+G GI + E +F+ F Q S ++ GTGLG
Sbjct: 519 G-------------DGELSLTFAVEDSGPGIAPDEVERIFDPFIQAKSSQAQQ--GTGLG 563
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L+I V M G+I V K S G++ + +
Sbjct: 564 LAISAQFVRLMKGDISVCSKLSRGSIFRFTI 594
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1019 LILMDCQMPKMDGYEATIEIRK--SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
LI MD +MP MDG +AT IR ESE A I+ALTA + +K L G N ++
Sbjct: 668 LIWMDMRMPVMDGMQATRAIRALVQESESQAPEPVILALTASVFEENREKILSAGCNKFV 727
Query: 1077 TKP 1079
KP
Sbjct: 728 RKP 730
>gi|339484233|ref|YP_004696019.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806378|gb|AEJ02620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 1247
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 148/275 (53%), Gaps = 33/275 (12%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
GV ++++ ++ L AR AE ++ KS FLA MSHE+RTPM +IG++++L+
Sbjct: 549 GVMRDIREHVRMMKDLKQARIDAEQASRAKSSFLAAMSHEIRTPMNGVIGMIDVLRQT-S 607
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L+ Q I+ S+YALL ++ ILD SK+E+GK+E+E L +E M +
Sbjct: 608 LSGYQMEMANLIRDSAYALLSIIEDILDFSKIEAGKLEIEKIPMRLASVVENACGMLAHL 667
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
VE L + IP NV GDP R+ Q+ N+INN+IKF+S+
Sbjct: 668 ALTKGVELTLFIDPGIPENVLGDPLRLRQVLVNIINNAIKFSSA---------------- 711
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
++K G+ L ++N +++ + F++ D G G+D+ + +F+S
Sbjct: 712 --------QEKPGKVSVRVLLTESN-------PDQVVITFQITDNGIGMDKETQDKLFKS 756
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
F QGDPSTTR+ GGTGLGL+I L M EI V
Sbjct: 757 FSQGDPSTTRRFGGTGLGLAISHHLAELMDAEITV 791
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 25/158 (15%)
Query: 941 SNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRR 1000
S ++ + +G IL+AED + Q V + L +G + DG +A++ L
Sbjct: 982 SREEALRQGKLILVAEDNDINQKVIRQQLNLLGYAGDIANDGREALKRLQDC-------- 1033
Query: 1001 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1060
+ L+L D MP+MDG+E T IR E+ ++IPI+ALTA+A+
Sbjct: 1034 ---------------NYALLLTDLHMPEMDGFELTKAIRSGETSK--KHIPIIALTANAL 1076
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
+ + CL GM+ YL+KP+ E + T+ + N S
Sbjct: 1077 KGEREHCLNAGMDDYLSKPVQLEDLRLTLEKYLSNAKS 1114
>gi|418479281|ref|ZP_13048364.1| signal transduction histidine kinase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|384573020|gb|EIF03523.1| signal transduction histidine kinase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 1086
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 151/276 (54%), Gaps = 41/276 (14%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
++KE K +A L + A+A+N KS FLANMSHE+RTPM ++G+L +L S+ +L
Sbjct: 410 ITKEKKAQASLQQESEI---AQAANEAKSMFLANMSHEIRTPMNGVVGMLSLL-SEGELD 465
Query: 456 NEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCS 515
+EQ + V IK S+ LL ++N ILD SK+E+G+M LE+ +LQ LE +D+ +Q +
Sbjct: 466 SEQRAMVSTIKDSALTLLHIINDILDFSKIEAGQMRLESAPVELQNLLERSLDVLYLQAN 525
Query: 516 NHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTSKN 574
N ++ L N+P+ + D R+ QI NL+ N++KFT S+ + + W
Sbjct: 526 NKGIDMYLTYDPNLPKVIMSDSVRISQIMLNLVGNAVKFTDSTSEVKGKVWV-------- 577
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFE--VDDTGCGIDQSKWETVFE 632
G N +A C + V+D G G+ + + E +F+
Sbjct: 578 -------SASLGS-------------------NGIAPCIDLMVEDNGIGMTEEQQENLFK 611
Query: 633 SFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
+F Q D TTR +GGTGLGLSI +L++ MGG I V
Sbjct: 612 AFTQADTRTTRLYGGTGLGLSITHSLLDLMGGSINV 647
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSE-SEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
FDLIL DC MP MDGYE T +IR+ E + +IPI+A+TA+AM ++C+ GM+ Y
Sbjct: 869 FDLILTDCHMPVMDGYELTSQIRQMERDDKDLGHIPIIAITANAMKEASEQCMTCGMDDY 928
Query: 1076 LTKPIDSERMVSTILR 1091
LTKP++ +++ ++I++
Sbjct: 929 LTKPVELKKLNASIIK 944
>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 878
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 189/413 (45%), Gaps = 65/413 (15%)
Query: 313 GSKVPPGHVIHVQNA-KLGHKQYY----MDTFFLNLKRLPIVGVIIIPR----------- 356
GS PGH++ L YY T L + LPIV ++I R
Sbjct: 331 GSTHYPGHMLCFTLCFALTMNSYYTGGHQSTLRLLMSTLPIVSALVIGRRASVQWSFVVL 390
Query: 357 --------------EYIMG--KADERAYKTLIILISASVCILVIGCICILILTNGVSKEM 400
EY+ G R++ II ++ V I + +C + +E
Sbjct: 391 IILLLFFIANLLGYEYVDGIPTITIRSHMNFIIDVTL-VLITMSFTLCYQYFIDEAHRET 449
Query: 401 KLR-AELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
K + +L DA +A + + +FLA MSHE+RTP+ +IG+ +L+ L E+
Sbjct: 450 KTKNLQLTVAKDAAVEAYQA---RQEFLATMSHEIRTPLNGLIGMATLLRDSLSLPPEEK 506
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
+K LLRL+N ILDLSK+E+ +M +EN F ++ E+ + + Q HN+
Sbjct: 507 QMAKSVKSCGDILLRLVNDILDLSKLEANQMVVENIGFRVKDMAHEICQVLAAQAKEHNL 566
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
+++DN+P + GD GR+ Q+ NL N+IKFT G + I +D ++ AE
Sbjct: 567 RLQYEVADNVPPVLFGDTGRILQVLMNLTGNAIKFTPEGVVKII-----IDLIEDDAE-- 619
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
+ F+ D + +CF V DTG G+ + +FE+F Q DP
Sbjct: 620 --------------------KITFKSD-EYNVCFRVQDTGIGVPPESHQKIFEAFVQADP 658
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ 692
S +RK+GG+GLGL + LV M GEI V G+ L L SE ++
Sbjct: 659 SDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHGGSTFWFILPLNVGSEMEE 711
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 32/137 (23%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+++L+AED + Q VA K LEK+G V +G + + L
Sbjct: 729 IKVLVAEDNVINQRVAVKFLEKLGIKADVASNGNEVLSNL-------------------- 768
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP------IVALTAHAMNAD 1063
+ ++DLI MD QMP +DG + IR+ E+ A+ P I LTA+ M+ D
Sbjct: 769 ---ENHQYDLIFMDFQMPILDGLRCSYTIRQMET---AKIWPMRFPIFICGLTANTMSTD 822
Query: 1064 EKKCLGVGMNAYLTKPI 1080
+K+C GMN +++KP
Sbjct: 823 KKRCFDNGMNWFISKPF 839
>gi|374374364|ref|ZP_09632023.1| multi-sensor hybrid histidine kinase [Niabella soli DSM 19437]
gi|373233806|gb|EHP53600.1| multi-sensor hybrid histidine kinase [Niabella soli DSM 19437]
Length = 730
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 167/312 (53%), Gaps = 45/312 (14%)
Query: 366 RAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAEL-ISHLDARRKAEASNNYKS 424
+ + T++ +++ ++ G I I+ ++ +L L IS L AR+ A N
Sbjct: 182 KTFGTILAIVAVVTSLIAFGYISYKII-----EQQRLIHRLNISELKARQSARVKEN--- 233
Query: 425 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 484
FLANMSHE+RTP+ AI+G +LK + +L+++ + I K+ LL+++N ILD+SK
Sbjct: 234 -FLANMSHEIRTPLNAILGFTGLLKQEPELSSQAGNYTTSIHKAGENLLQIVNNILDISK 292
Query: 485 VESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIF 544
+E+G M +E+ F+++ ++ ++++ +C +E ++ + + +P+ + GD RV Q+
Sbjct: 293 IEAGMMVVEHAPFEIRHTFSDIRNIYNQKCIEKGLEFIVTIDEGVPQFLLGDEVRVTQMI 352
Query: 545 SNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFR 604
NL+ N+IKFT G I + T RKK G A
Sbjct: 353 VNLVGNAIKFTDKGSIQV---------------IVTSRKKTGDA---------------- 381
Query: 605 EDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGG 664
+ L F+V DTG G+ + + +FE F+Q + R++GGTGLGLSIV+ LV+ M G
Sbjct: 382 ----ITLKFQVIDTGIGMTEPEEAAIFERFQQSEEGIARRYGGTGLGLSIVKDLVHLMNG 437
Query: 665 EIKVVKKNSPGT 676
I+V K G+
Sbjct: 438 TIEVHSKKGWGS 449
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 1014 TPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN 1073
T ++ LILMD QMP DGY IR + PIVA+TA A+ ++++C+ GMN
Sbjct: 523 TQKYALILMDIQMPVADGYSTAGVIRNDLK----IDTPIVAMTADALPGEKERCMAAGMN 578
Query: 1074 AYLTKPIDSERMVSTI 1089
YL+KPI+ + I
Sbjct: 579 EYLSKPINESELKKMI 594
>gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola sp.
4H-3-7+YE-5]
gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola sp.
4H-3-7+YE-5]
Length = 911
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 163/311 (52%), Gaps = 41/311 (13%)
Query: 379 VCILVIGCICILILTNG---VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELR 435
V I+ IL++ N +S+++++R ++ A+ +A+ +N KSQFLANMSHE+R
Sbjct: 495 VVIVAFSMTLILLMNNRQAVLSRKVEIRTRALAL--AKHEADKANKAKSQFLANMSHEIR 552
Query: 436 TPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 495
TP+ AIIG ++ K + L Q S + +I SS LL ++N ILD+SK+ES K+ LE
Sbjct: 553 TPLNAIIGFSQLAKRSNDLAEHQ-SYIHKISSSSDTLLAIINDILDISKIESEKLVLEEM 611
Query: 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV--RGDPGRVFQIFSNLINNSIK 553
EFDL L MF S NV+ L+ DN+P + +GDP R+ QI NL +N+IK
Sbjct: 612 EFDLHDILNRASTMFEPGASIKNVDWALE--DNLPAGLFFKGDPLRIEQIVINLCSNAIK 669
Query: 554 FTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613
FT G I++ L+ +KN + PT R +
Sbjct: 670 FTQQGRIVLHATL--LEHNKNESP-PTAR----------------------------IQI 698
Query: 614 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673
V DTG GI ++ +F +F Q D STTR+ GGTGLGL+I L M G + + +
Sbjct: 699 TVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTIESEEG 758
Query: 674 PGTLMQLYLLL 684
G+ L + L
Sbjct: 759 VGSEFTLTITL 769
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 26/144 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RIL+AED + Q+V +IL +G VV +G AV+A +
Sbjct: 790 LQGKRILVAEDNDINQVVITEILNSLGLKALVVDNGALAVQAASHH-------------- 835
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDLILMDCQMP +DGY AT +IR+ +H ++PI+ALTA M ++K
Sbjct: 836 ---------HFDLILMDCQMPVLDGYAATEQIRQ---QHDKSSLPIIALTADVMQESKQK 883
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
VG N +++KP++ E++ + +L
Sbjct: 884 AQQVGFNEHVSKPVNIEKLTAVLL 907
>gi|392966709|ref|ZP_10332128.1| multi-sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
gi|387845773|emb|CCH54174.1| multi-sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
Length = 1246
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 177/346 (51%), Gaps = 50/346 (14%)
Query: 388 CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
+ L +++ + AEL+ A+ +AE S K +FLANMSHE+RTPM +IG++++
Sbjct: 686 VVAALARDITELKRQAAELVK---AKDEAERSLKVKERFLANMSHEIRTPMNGVIGMIDL 742
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L +D QL +EQ V IK+SS LL +LN ILDLSK+E+GKM L L++ E+L+
Sbjct: 743 L-TDTQLNDEQREYVRTIKRSSETLLNILNDILDLSKIEAGKMVLHEAPVALKEIFEKLI 801
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
+F Q ++ N L++ +P V D R+ QI SNL +N+IKFT +G +
Sbjct: 802 ALFGQQAASKNNRLTYQLAEELPTFVIADQTRLLQILSNLTSNAIKFTENGSV------- 854
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
++D S + R KF R + EV DTG GI
Sbjct: 855 DVDVS-----LVSKRGKFNR-----------------------IRIEVRDTGIGISPENI 886
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG-- 685
+F SF Q D S+ + GGTGLGL+I + L + M GE+ V + G+ + L
Sbjct: 887 NLLFNSFSQVDTSSRKSFGGTGLGLAISKELAHLMKGEVGVESEVGKGSTFWFIIELKET 946
Query: 686 ------ASSESKQIYDADFPNTV---VVLATVGSMERMIISQWLRK 722
++E+ ++ A+F + V+L ++ R + S+ LRK
Sbjct: 947 AISPTQQTTEAAEVTLANFFSEYHPQVLLVDDNAVNRKVASEILRK 992
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++LL +D + + VA +IL K G V+ G +A+ ++ + +
Sbjct: 972 QVLLVDDNAVNRKVASEILRKAGCIVTTAASGPEAIASVAHGAGGKGPDATVTTVTPTPD 1031
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
TP FD+I MD QMP MDG E T +R E + PIVA+TA++M D ++ L
Sbjct: 1032 TPRPTPFDVIFMDIQMPDMDGVETTRHLR----EQFKQLPPIVAMTAYSMREDRERFLSQ 1087
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
G++ Y+ KPI ++ +++ + L S+ T
Sbjct: 1088 GLDDYIAKPIRAQSLIAKVKELVDAGQSKRAST 1120
>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
Length = 646
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 145/280 (51%), Gaps = 39/280 (13%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTPM ++G+ E+L D LT EQ IK S ALL ++N +LD
Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETD-LTEEQRLFASTIKTSGEALLVIINDVLDY 274
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+ K+ L FDL++ + ELV + V + +E ++D +P GDPGR+ Q
Sbjct: 275 SKIEAEKLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRFVGDPGRIRQ 334
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I +NL+ N++KFT SGH+++R + D GRA
Sbjct: 335 IMTNLLGNAVKFTESGHVLVRVTGVHPDAE-------------GRA-------------- 367
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
++ V+DTG GI K + +F F Q D RK GTGLGL+I + L+ M
Sbjct: 368 -------SVHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRLM 420
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV 702
GG+I V + G+ + L + +I +AD PN +
Sbjct: 421 GGKIWVDSEPGKGSTFGFSVSLPVA----EIVEADMPNLI 456
>gi|443478414|ref|ZP_21068171.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443016304|gb|ELS30996.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1360
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 148/294 (50%), Gaps = 43/294 (14%)
Query: 389 ILILTNGVSKEMKLRAELISH-------LDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
I I V KL+ EL H A+ AEA+N KS+FLANMSHE+RTPM +
Sbjct: 912 IAIAIQQVHLYQKLQLELAEHKQTEIALAQAKELAEAANKSKSEFLANMSHEIRTPMNGV 971
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G+ ++L S L N+Q + V I S ALL ++N ILD+SK+ESG ++LE EF+
Sbjct: 972 VGMAQLLASTP-LRNDQKNFVQIILDSGDALLNIINDILDISKIESGNLQLEQKEFNFDD 1030
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHII 561
+ + + Q + N+ +SD+ V GD R+ QIF NLI N+IKFT G+I
Sbjct: 1031 TIGSVCKLLGKQAFDKNINLQCQISDHALTTVLGDSSRLRQIFINLIGNAIKFTEQGYI- 1089
Query: 562 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG 621
N+ S+ K NN FR F + DTG G
Sbjct: 1090 ------NISYSR--------------------KPITNNIYEFR--------FSIVDTGIG 1115
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
ID + + +F F Q D S R++GGTGLGL+I + +V M G I V + G
Sbjct: 1116 IDSDRIDKLFTPFTQADASINRQYGGTGLGLAICKRIVELMNGTIWVESRGQVG 1169
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 13/148 (8%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+ ED L Q +A +LEK+G V V +G + L+ L +++ Q +
Sbjct: 1225 LKILVVEDNILNQKIAVLMLEKLGYKVDAVNNGR---DCLDMFLNQDTN------QDTNQ 1275
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+T P +D+I MD +MP M G EAT IRK S + IVA+TA + D + C+
Sbjct: 1276 DT--NPTYDIIFMDVKMPVMGGLEATQLIRKRLS--SSTQPWIVAITADVLPHDYEACIN 1331
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMP 1097
VGMN Y++KPI + + TI + P
Sbjct: 1332 VGMNDYISKPITIKDIKRTISQYMNQAP 1359
>gi|410663795|ref|YP_006916166.1| multi-sensor hybrid histidine kinase [Simiduia agarivorans SA1 =
DSM 21679]
gi|409026152|gb|AFU98436.1| multi-sensor hybrid histidine kinase [Simiduia agarivorans SA1 =
DSM 21679]
Length = 1004
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 170/329 (51%), Gaps = 44/329 (13%)
Query: 397 SKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
S E L E + AR AE +N KS+FLA+MSHE+RTPM ++G+L ++ + L
Sbjct: 311 SSEAALLIERRALQQARIDAEEANRAKSEFLASMSHEIRTPMNGVLGMLTHVQRSN-LDK 369
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
Q + + S+ +LL ++N ILD SK+++ K+ELE+ +F K L ++ + +C+
Sbjct: 370 TQAHQLALARTSAESLLTIINDILDFSKIDARKLELESLDFCPLKLLGDVAESMGERCAE 429
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
N+E +LD + V+GDP R+ QI NL+ N+IKFT G II+R
Sbjct: 430 KNLELILDFRELPAVFVKGDPSRLRQIVINLLANAIKFTQQGEIILRA------------ 477
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
LK+ A++ + L +V+DTG GID + +F+ F Q
Sbjct: 478 ---------------SLKENADHFL---------LGLDVEDTGIGIDAKQLAHLFQPFTQ 513
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
D STTR++GGTGLGL+I + L MGG++ V G+ ++ L SE ++I
Sbjct: 514 ADSSTTRRYGGTGLGLTICKHLCELMGGDVSVESVVGEGSRFHAHIQL-LHSERQRIPVP 572
Query: 697 DFPNTVVVL------ATVGSMERMIISQW 719
D + + + AT GS+ + +W
Sbjct: 573 DIRQSAIRILVVDDNATNGSIVADQLKRW 601
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 20/145 (13%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G ++L+ ED + Q V +LE G + G A++ L +
Sbjct: 728 LKGTQVLVVEDNVINQEVVQMLLEDAGIVCTFANHGQDAIDQLKQ--------------- 772
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ S P +ILMDCQMP MDG+EAT IR+ ++ + +PI+A+TA+AM D ++
Sbjct: 773 AGSAAPQ-----VILMDCQMPVMDGFEATRAIRRGDAGDAFKTLPIIAMTANAMQGDRER 827
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL GM+ YL+KPID + ++ T+ +
Sbjct: 828 CLAAGMSDYLSKPIDPDLVMLTLTK 852
Score = 48.9 bits (115), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
+RIL+ +D + L++ GA ++ G QA+ LN +
Sbjct: 578 AIRILVVDDNATNGSIVADQLKRWGADTALAGSGEQALIQLNHAVR-------------- 623
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
D P FDL ++D MP MDG IR + S N+ +V +T+ + + ++
Sbjct: 624 ----DAP-FDLAIIDLSMPDMDGRALAKAIRATPS---LANLKLVLMTSFSQYGEAREYA 675
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKN--MP 1097
+G +AY KP+ +E + I L + MP
Sbjct: 676 ALGFHAYFPKPVTTEDLYKAIAVLMDDTHMP 706
>gi|386394368|ref|ZP_10079149.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385735246|gb|EIG55444.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1526
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 180/343 (52%), Gaps = 28/343 (8%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
I +L + VS+ + EL L+A+R AE ++ KS+FLANMSHE+RTP++ IIG+ +
Sbjct: 1100 IGLLSVLRDVSERKRSEDEL---LEAKRTAEDASQAKSEFLANMSHEIRTPLSGIIGMTD 1156
Query: 447 ILKSDDQLTNEQYSTVCQ-IKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
+L D NE+ + I++S+ +L+ ++N ILD SK+E+ K+EL+ FDL + ++
Sbjct: 1157 LLLGAD--PNERQRLYLESIQESADSLMAIINDILDFSKIEARKLELQEQPFDLAQIMDA 1214
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
+ F + + +P ++ GDP R+ QI NL+ N+IKFTS G + I+
Sbjct: 1215 TLKGFKPLAEKKGLALTTFVHSGVPTDLFGDPVRLKQILVNLVGNAIKFTSKGGVDIQVG 1274
Query: 566 CENLDTSKNT-AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQ 624
NL N + PT+ A R +++ L F V DTG GI
Sbjct: 1275 TLNLPDEMNIFPKRPTNGPPPDDASRV---------------SRVRLLFSVRDTGIGIPL 1319
Query: 625 SKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+++F F QGD T +++ GTGLGLSI ++L+ M G I VV + G+ +LL
Sbjct: 1320 KNQQSIFGMFSQGDVGTKKQYAGTGLGLSITKSLITMMDGNIWVVSQEGKGSTFYCSVLL 1379
Query: 685 ------GASSESKQIYDADFPNTVVVLATVGSMERMIISQWLR 721
G+ + +++ A ++LA + R+ + + LR
Sbjct: 1380 KIQNQHGSKTTTEEAAPAPGRPLKILLAEDNPINRLFLQELLR 1422
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 23/148 (15%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILLAED P+ ++ ++L G T+ DG +A+EAL
Sbjct: 1402 LKILLAEDNPINRLFLQELLRNDGHTIKPAVDGQEALEALQ------------------- 1442
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FDL+LMD MP MDG EAT IR S S+ IPI+ALTAHA DE++ L
Sbjct: 1443 ----NEAFDLVLMDISMPGMDGIEATRRIRGSVSDKIDAKIPIIALTAHAFREDEERFLK 1498
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMP 1097
GM+ YL+KPID ++ + + K+ P
Sbjct: 1499 AGMDGYLSKPIDPAKLRKILNKYAKSKP 1526
>gi|428202001|ref|YP_007080590.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979433|gb|AFY77033.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 954
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 157/280 (56%), Gaps = 22/280 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE +N KS FLANMSHELRTP+ AI+G ++L + LT +Q + I +S
Sbjct: 469 AKEVAERANRAKSDFLANMSHELRTPLNAILGFSQLLNRETSLTKQQQENIGIINRSGEH 528
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LDL+K+ESGKM L T+FDL L+ + +M +++ + ++ +++ S+++PR
Sbjct: 529 LLSLINDVLDLAKIESGKMALYPTDFDLYALLDLIEEMLALRAESKGLQFIIERSNDLPR 588
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ D ++ Q+ NL+ N+IKFT G +I+R ++ + + A R
Sbjct: 589 YINTDDKKLRQVLINLLGNAIKFTHEGSVILR--ASSVMSHDSLA-------------RN 633
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+Q+ N+ + + FE++DTG GI + +T+FE+F Q + + + GTGLG
Sbjct: 634 HKEQRIND------QGQTTIYFEIEDTGAGIAPEEIDTLFEAFVQTE-TGKQSQQGTGLG 686
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
L I + V MGG I V K G++ + + S SK
Sbjct: 687 LPITKKFVELMGGTITVSSKVGQGSIFKFNIQAQLSEASK 726
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP M+GYEAT +I+ S + IVALTA + ++ L G + ++ K
Sbjct: 792 LIWMDMRMPVMNGYEATQQIK---SHIQGQATVIVALTASTLEEEKAVILSAGCDDFVRK 848
Query: 1079 PIDSE 1083
P E
Sbjct: 849 PFREE 853
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 34/278 (12%)
Query: 218 LSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277
++A P++ T +V V+GV L+S+ +++L + ++ + G L+A+S+
Sbjct: 211 ITATSPIY---TQKHQLVGVIGVDLLLASISDFLQQLKISPTAKTFIVERNGLLIASSST 267
Query: 278 APLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAKLGHKQYYMD 337
T + + A++S + IQ A++LQ ++ + + G +Q+
Sbjct: 268 EKPFTLVNGVAKRLSALNSSDERIQATAKYLQQKFSNFQAIKDKQKLDFQLQGKRQFVRV 327
Query: 338 TFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILTNGVS 397
T + + L + VI IP M + + T+ + A + +++G I +T +
Sbjct: 328 TPWKDEFGLDWLVVITIPESDFMAQINANTQTTITLCFVALLIAVLLGLITSRWITQPIL 387
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
+ K I+ D ++ E + G++E+ + +
Sbjct: 388 RLGKASVA-IAQGDLNQRVE-----------------------VKGIIEL-----SVLSH 418
Query: 458 QYSTVCQIKKSSYALLRLLNRILDL--SKVESGKMELE 493
++ + Q ++S+A L L N++LD ++E ELE
Sbjct: 419 SFNEMAQQLQASFANLALSNQLLDRVNQELEKSNQELE 456
>gi|376296963|ref|YP_005168193.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
Length = 1165
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 38/260 (14%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKS 468
L R AEA+N KS+FLA MSHE+RTPM AI+G+ EI L++D LT++Q + +K S
Sbjct: 653 LRTREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTEITLQTD--LTDDQRDYLKTVKDS 710
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
+ LL ++N ILDLSK+E+ K+EL++ +FDL + + VQ ++ VL++ +
Sbjct: 711 AQHLLSIINDILDLSKIEARKLELDHVDFDLPFHVRTTIKGLEVQARQKGLDMVLEIDEA 770
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
P V+GDP + Q+ NL N+IKFT G I IR P + + G
Sbjct: 771 APNCVKGDPLSLRQVLVNLAGNAIKFTHRGTIAIR-------VGPGQGPAPDEARTVG-- 821
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
+ F V+DTG GI + +++F+SF Q TTR GGT
Sbjct: 822 ----------------------VAFAVEDTGIGIPREFLDSIFQSFSQ----TTRAFGGT 855
Query: 649 GLGLSIVRTLVNKMGGEIKV 668
GLGL+I + L++ MGG+I V
Sbjct: 856 GLGLAICKQLISLMGGDIVV 875
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+AED + +V LE +G T +V GL+ ++ L R P
Sbjct: 915 VRVLVAEDNDVNIMVTTLKLEDMGYTYAVAKTGLEVLDLLKR---------------EP- 958
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKS--ESEHGARNIPIVALTAHAMNADEKKC 1067
FDLILMD +MP +DG T IR + +IPI+ +TAHA+ K
Sbjct: 959 -------FDLILMDIEMPVLDGISTTKAIRSAVPGGPIPDPDIPIIGVTAHALKEFRDKS 1011
Query: 1068 LGVGMNAYLTKPIDSERMVSTILRL 1092
L GM+ Y+ KP+D + I RL
Sbjct: 1012 LDAGMDDYVAKPVDFHELAVIINRL 1036
>gi|346226117|ref|ZP_08847259.1| putative two-component system sensor protein [Anaerophaga
thermohalophila DSM 12881]
Length = 1427
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 145/254 (57%), Gaps = 36/254 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLA MSHE+RTP+ AIIG L + T EQ + +I+ SS +LL ++N ILD
Sbjct: 779 KSDFLARMSHEIRTPLNAIIGWTH-LALEKSGTQEQNDYLKRIQSSSRSLLGIINDILDF 837
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G++ELE +FDL++ L+ L DM + + +E V D++ ++P ++ GDP R+ Q
Sbjct: 838 SKIEAGRLELEYIDFDLEQVLQNLADMVLFKANEKGLELVFDIAPDVPLSLVGDPLRLEQ 897
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ NL+NN++KFT G++ ++ R K R+ +T+
Sbjct: 898 VLVNLVNNAVKFTDKGYVNVK-----------------IRVKSTRSEKTE---------- 930
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
L F V+DTG G+ + + +F++F Q D STTRK+GG+GLGL+I + + M
Sbjct: 931 --------LLFAVEDTGIGLKEEQKNNLFKAFSQADVSTTRKYGGSGLGLAICKRITQMM 982
Query: 663 GGEIKVVKKNSPGT 676
GEI V + G+
Sbjct: 983 NGEIWVESEYGKGS 996
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++L+ ED + V ++L VV G A++ LA +
Sbjct: 1173 LKLLMVEDNDTNRQVTVELLAMANIKTDVVASGQDALD-----LAGQHK----------G 1217
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ P +D+ILMD MP M+GY AT I++ E G +P+VA+TA A+ E +CL
Sbjct: 1218 KCP----YDIILMDIHMPGMNGYTATRRIKRIE---GWEEVPVVAMTAEALGDVESQCLQ 1270
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM + KPID + + I RL P ++ T
Sbjct: 1271 AGMTGLVGKPIDPDDLFRVIYRLVFGEPEDSGKT 1304
>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Moorea producens 3L]
gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Moorea producens 3L]
Length = 549
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 147/268 (54%), Gaps = 35/268 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD---------DQLTNEQYST 461
+A+ KAE +N KS+FLANMSHELRTP+ I+G +IL+ D LT +Q
Sbjct: 143 EAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDAALAASKGERNLTAKQLEG 202
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I+KS LL L+N ILDLSK+E+GKM L TEF+L LEE+V + ++ S N+
Sbjct: 203 LKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMRASEKNIVL 262
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFPT 580
+ + N+P V+ D R+ Q+ NL++N++KFT G++ G E+ +
Sbjct: 263 RFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQGNVTFNVGVIEDQNP--------- 313
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
T L Q ++ + R + FEV DTG GI + ET+F+ FEQ S
Sbjct: 314 ----------TSLDQGKDSQIQHR-----TIRFEVIDTGIGISPQQLETIFQPFEQTGDS 358
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
R GTGLGL+I R LV MG ++ V
Sbjct: 359 KYRA-AGTGLGLAISRQLVEFMGSQLNV 385
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ +D P K LE G V V DG +E + E
Sbjct: 10 ILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVE------------------YEP 51
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
PD LIL+D MP +DG+E +K ++ +++IPI+ +TA A + K L +G
Sbjct: 52 PD-----LILLDVNMPVIDGFETC---KKLKNNPISKDIPIIFMTAFADINHKIKGLSLG 103
Query: 1072 MNAYLTKPIDSERMVSTI 1089
Y+ KP + E +++ +
Sbjct: 104 AVDYIPKPFEQEEVLARV 121
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075
R DLIL D MP + E+R+ +N+PI+AL+A +K+ +G +
Sbjct: 468 RPDLILTDLFMPVKTAFTMVPEMREIPD---LKNVPIIALSARTFEIVQKQSQMLGCEGF 524
Query: 1076 LTKPIDSER 1084
L KPID +R
Sbjct: 525 LPKPIDQDR 533
>gi|390945034|ref|YP_006408795.1| PAS domain-containing protein [Belliella baltica DSM 15883]
gi|390418462|gb|AFL86040.1| PAS domain S-box [Belliella baltica DSM 15883]
Length = 1439
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 155/287 (54%), Gaps = 37/287 (12%)
Query: 395 GVSKEM-KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+++++ KL+ A+ KAE ++ KSQFL+ MSHE+RTPM A+IG+ +L DD
Sbjct: 1039 GIARDITKLKEAQRELFYAKEKAEQASTIKSQFLSIMSHEIRTPMNAVIGMAHLLIEDDP 1098
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
+ Q + ++ S+ LL L+N ILD +K++SGK+ELE FD+ ++ ++ Q
Sbjct: 1099 RPD-QLENLKTLQFSAENLLGLINDILDYNKIDSGKIELEKVAFDIDMVFNRIIHSYTYQ 1157
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++ +L ++P+ + GDP R+ Q+ +NLI+N+IKFT G
Sbjct: 1158 AREKKLDVSFELDADLPKIMTGDPVRLAQVANNLISNAIKFTERG--------------- 1202
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
F + + K+ F + + + + FE +D+G GI K T+FE+
Sbjct: 1203 -----------FVKIYLKKV---------FEKKDSVKIRFEFEDSGIGIPDDKIATIFEA 1242
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q TTRK+GGTGLGL+IV+ LV GG I V + + GT+
Sbjct: 1243 FTQASTDTTRKYGGTGLGLAIVKRLVELFGGTISVNRTSIGGTIFSF 1289
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 25/151 (16%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRR 1000
N ++ L IL+AED + QI+ K L K G V + DG +A+EAL
Sbjct: 1309 NTQKNLSHASILVAEDNLVNQIMIKKFLNKWGVKEVVMANDGNEAIEAL----------- 1357
Query: 1001 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1060
+ F+LIL+D QMP+ DGYE IR + E R +PI+ALTA ++
Sbjct: 1358 ------------EGKEFNLILLDLQMPEKDGYEVGRYIRAHDDEK-IRTLPIIALTASSL 1404
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ + VGMN Y+ KP + + + + I++
Sbjct: 1405 LEVKDQIDAVGMNDYIPKPFNPDNLYAKIIK 1435
>gi|417773632|ref|ZP_12421508.1| GHKL domain protein [Leptospira interrogans str. 2002000621]
gi|410576517|gb|EKQ39523.1| GHKL domain protein [Leptospira interrogans str. 2002000621]
Length = 634
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 182/363 (50%), Gaps = 58/363 (15%)
Query: 405 ELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQ 464
EL+ LD AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q
Sbjct: 249 ELLKALD---DAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQQHIRNL 304
Query: 465 IKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLD 524
I+KS LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q + + +D
Sbjct: 305 IQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVD 364
Query: 525 LSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKK 584
S + GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 365 YSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------------- 411
Query: 585 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
K+ +V D+G GI + K + +F+ F Q D S +RK
Sbjct: 412 -----------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLDSSISRK 448
Query: 645 HGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQIYDAD- 697
+GGTGLGL+I + LV M G+I V + S G+ + +LL S+ +I D
Sbjct: 449 YGGTGLGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPEITDLSS 508
Query: 698 -FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFD 756
P+T +++A S ++S L+K K+ ++ ++ L+ I+ V + FD
Sbjct: 509 LSPDTFILIAEDDSTNIFLLSGILKKLKIK----------FELAKDGLEAITKVRVSRFD 558
Query: 757 APY 759
+
Sbjct: 559 LIF 561
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 515 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 553
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 554 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 609
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 610 MSDFLGKPYYKKDIEQMI 627
>gi|374580766|ref|ZP_09653860.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
gi|374416848|gb|EHQ89283.1| PAS domain S-box [Desulfosporosinus youngiae DSM 17734]
Length = 788
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 161/303 (53%), Gaps = 42/303 (13%)
Query: 391 ILTN--GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
ILTN V +++ R ++I ++ A+ AEA+N KS FLANMSHE+RTPM AI+G ++
Sbjct: 292 ILTNYIAVKEDITKRKQMIQEMEVAKSAAEAANRAKSTFLANMSHEIRTPMNAILGYTQL 351
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L+ D L+++Q + I +S LL L+N +L++SK+ESG++ + + +F L L+E
Sbjct: 352 LQRDVSLSSDQKEYLQIINQSGEHLLALINDVLEMSKIESGRVLINSEDFSLIDLLDECA 411
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
MF +Q + +DL IP +R D ++ Q+ N+I NSIKFT +G I IR C
Sbjct: 412 KMFRIQIQQKALIFKIDLLSQIPNFIRADGKKIRQVLINIIGNSIKFTDNGSITIRVLC- 470
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
TD + +++L L EV+DTGCGI +
Sbjct: 471 ------------TDGQI---------------------EDELILTIEVEDTGCGIAPEEI 497
Query: 628 ETVFESFEQGDPSTTRKHGG--TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
VFE FEQ + + KH G TGLG+ I R MGG++ V K G+ L++
Sbjct: 498 AKVFEVFEQ---TQSGKHVGSSTGLGMPISRHYARLMGGDLTVTSKLGEGSKFTFTLIIH 554
Query: 686 ASS 688
+S
Sbjct: 555 RTS 557
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+IL+ +D + + IL KVG +V DG +A+ Q P
Sbjct: 582 KILVVDDIVTNRTLLRLILGKVGFSVQEAGDGKEALSLFR--------------QWKP-- 625
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D+ILMD +MPKMDG+EAT R +S + + ++ +TA + D + L
Sbjct: 626 -------DVILMDARMPKMDGFEAT---RLIKSTPEGQRVGVIIITASVLENDRLEALES 675
Query: 1071 GMNAYLTKPI 1080
G + ++ KP
Sbjct: 676 GADGFIRKPF 685
>gi|428771294|ref|YP_007163084.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428685573|gb|AFZ55040.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1594
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 39/308 (12%)
Query: 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLL 476
+++N KS+FLA+MSHE+RTPM AI G + +D L+N+Q S + +I+K+ +LL ++
Sbjct: 851 DSANKAKSEFLASMSHEIRTPMNAIQGFTHLALQED-LSNKQKSYLVKIQKACESLLLII 909
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILD SK+E+GK++LE F L L ++ ++ + +E V D+ D++ + GD
Sbjct: 910 NDILDFSKIEAGKLDLEADNFLLDNILTDVANLLHPRIQEKGLELVFDIDDHLDCSFLGD 969
Query: 537 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ 596
R+ QI +NLINN+IKFT G I+I T +QQ
Sbjct: 970 SLRLSQILTNLINNAIKFTEKGQIVI----------------------------TVRRQQ 1001
Query: 597 ANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
++K+ L F V+DTG GI + K +F+ F Q D S TRK+GGTGLGL I R
Sbjct: 1002 IT-------EDKITLYFCVEDTGVGIAKDKLSLLFKPFSQADNSITRKYGGTGLGLVISR 1054
Query: 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV---VVLATVGSMER 713
L+ MGG+I + + G+ + L + + + + + +++ S+ R
Sbjct: 1055 RLIEIMGGKIWAESQENKGSKFHFTINLNKGNSNSNLIPRNLSHLTSNPILVVDDNSIIR 1114
Query: 714 MIISQWLR 721
+I+++L
Sbjct: 1115 QVITRFLE 1122
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 26/147 (17%)
Query: 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLL 1004
+ + +LL ED + Q + ++L+++ + V +GL+A+E +
Sbjct: 1243 QCFQNCHLLLVEDNEINQEIVVELLQEID--IDVANNGLEALEKVM-------------- 1286
Query: 1005 QGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
T +D ILMD MP+MDG EAT IRK E E+ + +PI+A+TAHAM D+
Sbjct: 1287 ---------TQNYDAILMDISMPEMDGLEATKRIRKLEGEYFQK-LPIIAMTAHAMTGDK 1336
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ L GMN ++TKPI+ ++ T+++
Sbjct: 1337 ELSLKAGMNDHITKPINPNQLKETLMQ 1363
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+ +D +I+ V + LE V V GL+A++ L +
Sbjct: 1104 ILVVDDNSIIRQVITRFLESFSFAVKAVNSGLEAIKELEK-------------------- 1143
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCLGV 1070
+ LI++D QMP ++G E I+ ++ NIP I+ +TAH ++ E+
Sbjct: 1144 -GEKDYKLIIIDWQMPYLNGIET---IQAIKANPNITNIPLILMITAHHISELEELKKKQ 1199
Query: 1071 GMNAYLTKPIDSERMVSTILRL 1092
+ +L+KPI + + IL +
Sbjct: 1200 ELQHFLSKPITKSSLFNAILEV 1221
>gi|359446280|ref|ZP_09235975.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
gi|358039883|dbj|GAA72224.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
Length = 1573
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 180/335 (53%), Gaps = 40/335 (11%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+ L+ ++ VS+ K AE + A +A+ + KSQFLA MSHE+RTPM ++G+LE
Sbjct: 1023 LATLVGSSLVSQRRKQTAEKLK--VALVQAKEAGVAKSQFLATMSHEIRTPMNGVLGMLE 1080
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+++ + L + V K+S+++LL ++N ILD SKVE+GK+ELE+ F+ + + +
Sbjct: 1081 LIQLEP-LPKHVETKVGIAKQSAHSLLAVINDILDFSKVEAGKVELESINFNARDLIGYV 1139
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
+ ++ +E +LDL P +++GDP R+ Q+ +NL++N++KFTS G ++I
Sbjct: 1140 AEAQALSAQGKGIEIILDLVAVEPSHLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASI 1199
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
+ PTD+ G F+ +K D+G GI + K
Sbjct: 1200 K-----------PTDQ---GLEFKVSVK----------------------DSGIGISKEK 1223
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
+ +F F Q D STTR++GGTGLGL+I + L MGG I V + G++ ++L
Sbjct: 1224 QKQLFSPFTQVDASTTREYGGTGLGLAICKQLCELMGGYISVSSEIGKGSVFTAQMILEE 1283
Query: 687 SSESKQ-IYDADFPNTVVVLATVGSMERMIISQWL 720
E ++ + + + +++ R++IS+ L
Sbjct: 1284 GEEQERYVPNVNINELTILVVDDNQTNRLVISEQL 1318
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 20/130 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
ILL ED P+ Q V+ +L+K+ V+V +G QA+E L+
Sbjct: 1451 EILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEILS-------------------- 1490
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ F L+LMDCQMP MDGY AT IR + + + I I+ALTA+AM +D+++C+
Sbjct: 1491 AHEKGHFSLVLMDCQMPVMDGYSATTAIRNNAAGEQHKAIKIIALTANAMESDKQRCIDA 1550
Query: 1071 GMNAYLTKPI 1080
GM+ YL+KPI
Sbjct: 1551 GMDDYLSKPI 1560
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL+ +D ++V + L GA V + D QA+E + +
Sbjct: 1299 LTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALEMCENRIKNQQKV---------- 1348
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ ++D QMP MDG E +I K+++ + + +P+V +T+ A D ++
Sbjct: 1349 -------YDIAVLDMQMPDMDGIELC-KILKADANY--QPMPLVMMTSIAGMEDAQRYSD 1398
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
G AY KP+ + ++S + + N +A
Sbjct: 1399 AGFQAYFPKPVTTADLISALSVIANNPQKQA 1429
>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 693
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 155/289 (53%), Gaps = 42/289 (14%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G SK + R + + L +AR++AE++N+ KSQFLA MSHE+RTP+ A++GL++ L +D
Sbjct: 300 GTSKNITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTL-ADSG 358
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L EQ V Q+ +S+ LL ++N ILDLSK+ESG EL N E + + +V+ S Q
Sbjct: 359 LRQEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQ 418
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
N N+ ++ +P + GD R+ QI NLI N+IKFTS+G +
Sbjct: 419 ARNKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTSTGSV------------- 465
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
R ++ EDN + V DTG GI + +F
Sbjct: 466 -------------RVLARRV-----------EDN---IEISVIDTGIGIAKQAQNNLFHP 498
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
F Q D S TRK+GGTGLGL+I + L++KM G+I++ G+ ++ L
Sbjct: 499 FHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSSLGIGSCFKVIL 547
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 26/140 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILLAED+ Q+VA +LEK G V +V +G +A+EA+
Sbjct: 571 LNILLAEDSITNQMVARLMLEKRGHKVHIVNNGEEALEAIRH------------------ 612
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+FDL+ MD MP +DG EAT +R E IPI+ALTA+ M D+ +
Sbjct: 613 ---GHKKFDLVFMDVSMPLVDGVEATRIVRSEGIE-----IPIIALTANVMKQDQIEYHE 664
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GMN +L KPI + S +
Sbjct: 665 AGMNEFLPKPIRGSELTSIL 684
>gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1295
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 143/271 (52%), Gaps = 29/271 (10%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYA 471
R E S YKS+FLANMSHELRTP+ +I+ L ++L ++ + L Q I S
Sbjct: 559 RDLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNLQPRQLEFANTIHNSGSD 618
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LDLSK+E+G+ME+ +L++ ++ L+ F Q + + +++ P
Sbjct: 619 LLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQNGLRLSGEITPEAPA 678
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ D R+ QI NL++N++KFT G I +R C GR R
Sbjct: 679 TIFTDETRLRQILKNLLSNALKFTQQGEITLR--C-------------------GRPARA 717
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+L R + A+ F V D+G GI K E VFE+F+Q D +T+RK GGTGLG
Sbjct: 718 ELP------TGLRLVPERAVYFAVSDSGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLG 771
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LSI R L +GGE+ V GT L+L
Sbjct: 772 LSISRQLARLLGGELSVSSCEGEGTTFTLWL 802
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 25/167 (14%)
Query: 923 HQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDG 982
H++ S D+ + +++ I +G +LL +D +LE+ G + V DG
Sbjct: 1148 HRVEKSLPDEQQEIIKTLHHRESIFDGRTVLLVDDDMRNVFALSSVLEEHGLEIVVARDG 1207
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042
+A+ L+ + P+ DL+LMD MP+MDGYEA IR+
Sbjct: 1208 REALAKLD----------------------EHPKIDLVLMDIMMPEMDGYEAMRRIRRDP 1245
Query: 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ G +PI+ALTA AM D+ KCL G N YL KP+DSER++S +
Sbjct: 1246 ARRG---LPIIALTAKAMRGDKDKCLEAGANDYLAKPVDSERLLSLL 1289
>gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB18]
gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB18]
Length = 1022
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 164/316 (51%), Gaps = 42/316 (13%)
Query: 367 AYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQF 426
A ++LII + I VI C + ++ + + ++ H A R+AEA+N KS+F
Sbjct: 255 ATRSLIIFALGLIGIFVISCTLFTMF----ARSARAQNRILKH--AVRRAEAANEAKSEF 308
Query: 427 LANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVE 486
LANMSHE+RTP+ ++G+ ++L D LT Q + I S L+ +LN +LD++K++
Sbjct: 309 LANMSHEIRTPLNGVLGMADVLMRTD-LTPVQRNYAQLIVTSGSLLMTILNDVLDMAKLD 367
Query: 487 SGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSN 546
SG++ ++ + +LQ +L+E + Q ++E VLD++ ++PR+V+ DP R+ QI N
Sbjct: 368 SGQLAIKPCKVELQLQLKEAASFYFAQAREKDLELVLDVAPDVPRHVQLDPMRLRQILGN 427
Query: 547 LINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 606
LI N++KFTS G + + ++ D +K GR
Sbjct: 428 LIGNALKFTSKGGVAVIVSYQHQD------------EKSGR------------------- 456
Query: 607 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
L V DTG G+ + + +F F Q + R GTGLGL+I + L N MGGEI
Sbjct: 457 ----LHISVVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEI 512
Query: 667 KVVKKNSPGTLMQLYL 682
V + G+ ++
Sbjct: 513 GVTSEKGVGSTFSFWI 528
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 23/147 (15%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G +LL +D + I+ +I+++ G V +G ++ RM A S
Sbjct: 688 GSSVLLVDDNQINLIILEEIMKEFGFAVEATTEGASSI----RMAEAGS----------- 732
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FDL+L+DCQMP M+G+ T ++R+ + ++ PIVA+TA+A+ D + C+
Sbjct: 733 --------FDLMLIDCQMPVMNGFVVTGKMRELMAAGEIKSCPIVAVTANALKGDREACI 784
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKN 1095
GM+ + KPI + + +L K+
Sbjct: 785 EAGMDDVVFKPISIRIIADALDQLVKS 811
>gi|427715590|ref|YP_007063584.1| GAF sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427348026|gb|AFY30750.1| GAF sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 2213
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 47/286 (16%)
Query: 412 ARR----KAEA---SNNYKSQFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTV 462
ARR KAE S+ YKS+FLANMSHELRTP+ +++ L +L + LT++Q
Sbjct: 1511 ARRSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNVESNLTSKQVEYS 1570
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
I + LL L+N ILDL+K+ESG M ++ T+ L + E++ F +N +
Sbjct: 1571 QTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLSELSEQIERTFQHTANNKRLTFT 1630
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR------GWCENLDTSKNTA 576
++L+ +PR + D R+ Q+ NL++N+ KFT SG + +R GW N
Sbjct: 1631 VELAPELPRTIYTDAKRLQQVLKNLLSNAFKFTESGEVALRIEVAQQGWSFN-------- 1682
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
K RA + + F V DTG GI K + +FE+F+Q
Sbjct: 1683 -----NKSLNRA-------------------QTVIAFSVRDTGIGIAPEKQKVIFEAFQQ 1718
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
D +T+RK+GGTGLGLSI R + + GGEIK+V + G+ YL
Sbjct: 1719 ADGTTSRKYGGTGLGLSISREIAHLFGGEIKLVSQIGQGSTFTFYL 1764
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGM 1072
+TP D++LMD MP+MDGY+ T IR++E + +PI+ALTA AM D +KC+ G
Sbjct: 2134 NTPDIDVVLMDVMMPEMDGYDTTRLIRQNER---FKTLPIIALTAKAMQGDREKCMESGA 2190
Query: 1073 NAYLTKPIDSERMVSTILRL 1092
+ Y+TKP+D E+++S +LR+
Sbjct: 2191 SDYITKPVDIEQLLS-LLRV 2209
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 147/277 (53%), Gaps = 36/277 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+AR +AE +N KS+FLANMSHE+RTPM A+IG ++L L + Q IK+S
Sbjct: 495 EARDRAERANAAKSEFLANMSHEIRTPMNAVIGFTDLLLDS-GLDDIQMDYAKTIKQSGE 553
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
L+ L+N ILD SK+E+G ++ E +FD + ++ DM + +E + + D +P
Sbjct: 554 GLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRIGEKPIEILCHIGDTVP 613
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+++GDP RV Q+ +NL+ N+ KFT +G I + +LD +
Sbjct: 614 DHIKGDPTRVRQVLTNLMANAPKFTEAGEIEL-----SLDVEEE---------------- 652
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++ ++ L V DTG GI +K E +F+ F+Q D STTRK+GGTGL
Sbjct: 653 --------------DEGRVKLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGL 698
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GLSI + + MGG++ G++ LG S
Sbjct: 699 GLSICKQISRLMGGDVWAESDEGKGSIFHFTAWLGKS 735
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 83/153 (54%), Gaps = 34/153 (22%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RILLAED P+ Q +A +L+K G V V +G +A+E L +A+ +
Sbjct: 911 VRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEIL---MASRNG----------- 956
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-------------NIPIVALT 1056
F LI MD QMP+MDG+ AT EIR+ ESEH + IPI+A+T
Sbjct: 957 -------FHLIFMDVQMPEMDGFTATREIRRLESEHVLKPPQCTDFHASTIARIPIIAMT 1009
Query: 1057 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
AHAM D + C+ GM+ Y+TKPI E + S +
Sbjct: 1010 AHAMKGDREACIDAGMDDYITKPIKREGVFSIV 1042
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSES-----EHGARNIPIVALTAHAMNADEKKCLGVG 1071
FD+ + D QMP M GYE +IR ES + R++P++AL++ D K+C VG
Sbjct: 800 FDICITDIQMPIMSGYEVARQIRLFESPVSGLQTSIRSLPLMALSS-VRGQDAKRCREVG 858
Query: 1072 MNAYLTKPIDSERMVSTILRL 1092
+ +L KPI ER+ + R+
Sbjct: 859 FDGFLGKPIRRERLYRMLERI 879
>gi|359437875|ref|ZP_09227924.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
gi|358027362|dbj|GAA64173.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
Length = 1573
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 180/335 (53%), Gaps = 40/335 (11%)
Query: 387 ICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+ L+ ++ VS+ K AE + A +A+ + KSQFLA MSHE+RTPM ++G+LE
Sbjct: 1023 LATLVGSSLVSQRRKQTAEKLK--VALVQAKEAGVAKSQFLATMSHEIRTPMNGVLGMLE 1080
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+++ + L + V K+S+++LL ++N ILD SKVE+GK+ELE+ F+ + + +
Sbjct: 1081 LIQLEP-LPKHVETKVGIAKQSAHSLLAVINDILDFSKVEAGKVELESINFNARDLIGYV 1139
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
+ ++ +E +LDL P +++GDP R+ Q+ +NL++N++KFTS G ++I
Sbjct: 1140 AEAQALSAQGKGIEIILDLVAVEPSHLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASI 1199
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
+ PTD+ G F+ +K D+G GI + K
Sbjct: 1200 K-----------PTDQ---GLEFKVSVK----------------------DSGIGISKEK 1223
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
+ +F F Q D STTR++GGTGLGL+I + L MGG I V + G++ ++L
Sbjct: 1224 QKQLFSPFTQVDASTTREYGGTGLGLAICKQLCELMGGYISVSSEIGKGSVFTAQMILEE 1283
Query: 687 SSESKQ-IYDADFPNTVVVLATVGSMERMIISQWL 720
E ++ + + + +++ R++IS+ L
Sbjct: 1284 GEEQERYVPNVNINELTILVVDDNQTNRLVISEQL 1318
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 20/130 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
ILL ED P+ Q V+ +L+K+ V+V +G QA+E L+
Sbjct: 1451 EILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEILS-------------------- 1490
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ F L+LMDCQMP MDGY AT IR + + + I I+ALTA+AM +D+++C+
Sbjct: 1491 AHEKGHFSLVLMDCQMPVMDGYSATTAIRNNAAGEQHKAIKIIALTANAMESDKQRCIDA 1550
Query: 1071 GMNAYLTKPI 1080
GM+ YL+KPI
Sbjct: 1551 GMDDYLSKPI 1560
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL+ +D ++V + L GA V + D QA+E + +
Sbjct: 1299 LTILVVDDNQTNRLVISEQLGHWGAHVELASDAKQALEMCENRIKNQQKV---------- 1348
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D+ ++D QMP MDG E +I K+++ + + +P+V +T+ A D ++
Sbjct: 1349 -------YDIAVLDMQMPDMDGIELC-KILKADANY--QPMPLVMMTSIAGMEDAQRYSD 1398
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
G AY KP+ + ++S + + N +A
Sbjct: 1399 AGFQAYFPKPVTTADLISALSVIANNPQKQA 1429
>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 1545
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 168/325 (51%), Gaps = 43/325 (13%)
Query: 399 EMKLR-AELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
E+K+R AEL +AR++A ++ KS+FLANMSHE+RTPM ++G+ E+L D L +
Sbjct: 971 ELKMREAEL---REARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSD-LDPK 1026
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + I KS ALL ++N ILD SK+++G++ L+ F+L + +E++ + S +
Sbjct: 1027 QKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEK 1086
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
++E ++ + + GD GR+ QI +NL+ N++KFT GH+++ E +
Sbjct: 1087 DLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERV-------- 1138
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
PT K L V DTG GI + K + VFE F Q
Sbjct: 1139 -PTGTK---------------------------LTISVTDTGIGIPEEKLKLVFEKFSQV 1170
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL--GASSESKQIYD 695
D S+TR+H GTGLGL+I LV MGG+I V G+ + L ++I
Sbjct: 1171 DTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTLPRAGQQNGQRIMP 1230
Query: 696 ADFPNTVVVLATVGSMERMIISQWL 720
D V++ ++ R I+++ +
Sbjct: 1231 IDVTGARVLIVDDNAVNRAILTEQM 1255
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 57/238 (23%)
Query: 880 SIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNS 939
S+AN S +R + I P SS E L+ T+ R RH G S QP ++ +
Sbjct: 1326 SLANTS------YRDLGIDAQLIKPARSSVLLETLVATIQRHRHNTGGSDA-QPLAADVA 1378
Query: 940 SSN-----------QKRILEG---------------LRILLAEDTPLIQIVACKILEKVG 973
+SN Q+ +L+ L IL+AED + Q+V +IL + G
Sbjct: 1379 ASNVTRPQPSAPSEQRALLQPPSIRPRPPVAAGGDRLDILVAEDNEVNQMVFTQILGETG 1438
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
+V +G +A++A R+ +P +ILMD MP+M+G E
Sbjct: 1439 YGFEIVGNGRKALDAFGRL--------------NPC---------MILMDVSMPEMNGLE 1475
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT IR+ E E G ++PIV +TAHA+ D ++CL GM+ YL KPI ++ + R
Sbjct: 1476 ATAAIRRLEEETGT-HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVER 1532
>gi|428771873|ref|YP_007163661.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686152|gb|AFZ46012.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1346
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 35/243 (14%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
S FLANMSHE+RTPM +IG+ ++L + LT EQ V I++SS LL ++N ILD S
Sbjct: 954 SNFLANMSHEIRTPMNGVIGIAQLL-ALSPLTPEQRDLVATIEESSNVLLSIINDILDFS 1012
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K++SGK+ELE T F LQ L+ + +FS Q ++ N+E + D+IP V GD R+ Q+
Sbjct: 1013 KIDSGKLELEQTGFSLQDLLKSISLLFSKQITDKNIEFAYHIDDSIPPMV-GDSTRLKQV 1071
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
F NLI+N+ KFTS G I IR +K+G
Sbjct: 1072 FLNLISNAFKFTSQGSIKIR------------------VEKYGV---------------L 1098
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
D+ L + DTG G+ + +F F Q D S +RK+GGTGLGL+I ++L+N MG
Sbjct: 1099 TPDSHQTLIVSIRDTGIGVPSDRISLLFTPFTQADTSISRKYGGTGLGLAISKSLINMMG 1158
Query: 664 GEI 666
G I
Sbjct: 1159 GTI 1161
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 29/138 (21%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
L+ILLAED + Q VA +L+K+G + +GL+ +E + +
Sbjct: 1222 ALKILLAEDDRVNQKVALLMLKKLGYQADIALNGLEVLEKVAQQ---------------- 1265
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKC 1067
+D+ILMD QMP M G +AT EIRK G R P I+ALTA+A+ D+++C
Sbjct: 1266 -------NYDVILMDLQMPHMGGIQATQEIRK-----GDRPQPYIIALTANALEEDQQQC 1313
Query: 1068 LGVGMNAYLTKPIDSERM 1085
VGMN +L+KP+ ++
Sbjct: 1314 KSVGMNDFLSKPLQLHKL 1331
>gi|417761785|ref|ZP_12409788.1| GHKL domain protein [Leptospira interrogans str. 2002000624]
gi|418671484|ref|ZP_13232836.1| GHKL domain protein [Leptospira interrogans str. 2002000623]
gi|409942303|gb|EKN87917.1| GHKL domain protein [Leptospira interrogans str. 2002000624]
gi|410581745|gb|EKQ49554.1| GHKL domain protein [Leptospira interrogans str. 2002000623]
Length = 671
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 179/358 (50%), Gaps = 55/358 (15%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
L A AE +N KSQFLA+MSHE+RTP+ IIGL+E KS L Q I+KS
Sbjct: 288 LKALDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST-PLDESQQHIRNLIQKSG 346
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL+++N ILD SK+E K+ LE EF ++ +EE + +F Q + + +D S +
Sbjct: 347 ENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQATQKGLVLSVDYSPDF 406
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
GD R+ Q+ SNLI+N++KFT SG I IR + E ++T
Sbjct: 407 IDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIET------------------ 448
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
K+ +V D+G GI + K + +F+ F Q D S +RK+GGTG
Sbjct: 449 ------------------KIEYKIQVIDSGIGIPREKIDLLFQKFFQLDSSISRKYGGTG 490
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA------SSESKQIYDAD--FPNT 701
LGL+I + LV M G+I V + S G+ + +LL S+ +I D P+T
Sbjct: 491 LGLAISKKLVELMNGKIHVSQNKSKGSTFEFTVLLSEFVSKDHSTYLPEITDLSSLSPDT 550
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPY 759
+++A S ++S L+K K+ ++ ++ L+ I+ V + FD +
Sbjct: 551 FILIAEDDSTNIFLLSGILKKLKIK----------FELAKDGLEAITKVRVSRFDLIF 598
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
IL+AED + IL+K+ + DGL+A+ +
Sbjct: 552 ILIAEDDSTNIFLLSGILKKLKIKFELAKDGLEAITKVR--------------------- 590
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
RFDLI MD MP +DG A+ I ++ + + I+A+TA + D+ KC G
Sbjct: 591 --VSRFDLIFMDINMPHLDGISASNFIL-TDPMISPKPV-IIAVTADVLQEDKIKCRQAG 646
Query: 1072 MNAYLTKPI---DSERMV 1086
M+ +L KP D E+M+
Sbjct: 647 MSDFLGKPYYKKDIEQMI 664
>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 1397
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 45/293 (15%)
Query: 388 CILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
I ++ +G++ ++R ++ L+ AR +AE +N KS FLA MSHE+RTPM +IG+ +
Sbjct: 678 VIKLIPSGINVSERIR--ILKDLEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMAD 735
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L+ L+ Q V I++S++ALL ++ ILD SK+E+G++E+E ++K +E+
Sbjct: 736 VLQQT-SLSGYQMEMVDLIRESAFALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKA 794
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS----GHIII 562
M + VE L L IP V GD R+ Q+ NL NN+IKF+S G + +
Sbjct: 795 CAMLESLAARKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSV 854
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
R D T E FE+ D G G+
Sbjct: 855 RALLVEHDQDTVTVE-----------------------------------FEITDNGIGM 879
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
++ +F SF QGD STTR++GGTGLGL+I LV MGG I+V +++PG
Sbjct: 880 NEEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSIQV--RSAPG 930
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 26/163 (15%)
Query: 941 SNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRR 1000
S +K + EG IL+AED+ + Q V + L +G + DG EAL R
Sbjct: 1113 SREKALSEGRLILVAEDSEINQKVIRQQLSLLGYAADIAKDG---GEALKRW-------- 1161
Query: 1001 RSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM 1060
++ + L+L D MP++DGY+ T IR E E GA PI+A+TA+A+
Sbjct: 1162 ------------ESNNYALLLTDLHMPEIDGYQLTAAIRLKEGEQGAARKPIIAITANAL 1209
Query: 1061 NADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
+ + C VGM+ YL+KP+ + + L K +PS + T
Sbjct: 1210 KGEAEHCRAVGMDDYLSKPVQLSHLKAV---LQKWLPSPGSST 1249
>gi|300865287|ref|ZP_07110101.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336760|emb|CBN55251.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1581
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 194/370 (52%), Gaps = 38/370 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+N KS+FLANMSHELRTP+ I+G ++++K+D +T +Q ++ I++
Sbjct: 1076 AKEVAEAANRAKSEFLANMSHELRTPLNGILGYVQLIKADKNITEDQQESLGNIQQCGEH 1135
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+ ILDLSK+E+ KMEL EF+L ++ + D+F ++ + N+ + ++P
Sbjct: 1136 LLTLIEDILDLSKIEARKMELSPVEFNLPNFVKNIADLFQMRSAQKNIAFTCEQISSLPT 1195
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GWCENLDTSKNTAEFP---TDRKKFGR 587
V GD R+ Q+ NL+ N++KFT+SG + R G+ E D + T ++ T +K+ G
Sbjct: 1196 YVCGDDKRLRQVLINLLGNAVKFTNSGSVTFRVGYVEAGDWGE-TGDWGLGITSKKEQGT 1254
Query: 588 AFRTKLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGDPSTTRK 644
K + A+N+ L + F+V+DTG GI+++K E +F F Q + R
Sbjct: 1255 T-----KTEQLTAINY----PLPITKIRFQVEDTGIGIEENKLEEIFLPFHQ---VSDRV 1302
Query: 645 HG--GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL---------YLLLGASSESKQI 693
+ GTGLGLSI LV MGGEI V G++ + Y L A E +I
Sbjct: 1303 YSIEGTGLGLSISYKLVKMMGGEISVKSSLGKGSVFWIDLELPSAGTYCELAAPPEKGRI 1362
Query: 694 YDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRE------LLDPI 747
V++ + R ++ + L + +E ++ Q E L+D +
Sbjct: 1363 VGFTGNKRKVLIVDDNDINRAMLRRLLSRIGFEIMEAADGKDCLQKAVEFLPNVILMDLL 1422
Query: 748 SPVSSNGFDA 757
PV +GF+A
Sbjct: 1423 MPV-MDGFEA 1431
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 68/139 (48%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ +D + + + ++L ++G + DG + LQ +
Sbjct: 1371 KVLIVDDNDINRAMLRRLLSRIGFEIMEAADG------------------KDCLQKAVEF 1412
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P+ +ILMD MP MDG+EAT +R+ +N+ ++AL+A + +++ L
Sbjct: 1413 LPN-----VILMDLLMPVMDGFEATRCLRRIPE---LKNVVLLALSASVFHNTQEESLLA 1464
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + +L KP+++ +++ +
Sbjct: 1465 GCDQFLRKPVEASQLLERL 1483
>gi|406606624|emb|CCH41996.1| Hybrid signal transduction histidine kinase J [Wickerhamomyces
ciferrii]
Length = 1043
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 155/291 (53%), Gaps = 15/291 (5%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N+ KS+FL SHELRTP I+ + L D +LT Q
Sbjct: 468 LRESIKRNTAAREAAELANSAKSEFLGIFSHELRTPFNGILNYTQ-LTLDTELTQYQREM 526
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL ++N ILD+SK+E+ +M +E EF L+ + + +V+ ++
Sbjct: 527 LSTVHNLANSLLTIINDILDISKIEANRMTVEEAEFSLRGTVFGALKTLAVKSIEKPLDL 586
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++ + P ++ GD R+ Q+ NL+ N+IKFTS GH+ L K T T
Sbjct: 587 IYEVDSSFPDSIIGDSFRLRQVILNLVGNAIKFTSKGHV-------KLSVKKATDPLDTQ 639
Query: 582 RKKFGRAFRTKLKQQANNAMN-----FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
K + + N +N ++D+ L L F V DTG GI + K + +FE+F Q
Sbjct: 640 ISKTIENNNYVIGTNSGNLINDSAPQIKKDSTLVLEFCVSDTGIGIKKEKLDLIFETFTQ 699
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
D STTRK GGTGLGLSI + L++ MGGEI V+ G+ + Y + S
Sbjct: 700 ADGSTTRKFGGTGLGLSISKKLIHLMGGEIWVISAFREGS--KFYFTIATS 748
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 28/145 (19%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q +A +ILEK G VSVV +GL+A E + +
Sbjct: 895 ILLAEDNLVNQKLAVRILEKYGHQVSVVKNGLEAFEEVKK-------------------- 934
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-----IPIVALTAHAMNADEKK 1066
R+D++LMD QMP M G+EAT +IR E E + +PI+ALTAHAM D ++
Sbjct: 935 ---KRYDVVLMDVQMPIMGGFEATEKIRLWEKEVNPLDPFSVRLPIIALTAHAMLGDRER 991
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
CL M+ Y++KP+ +V TI +
Sbjct: 992 CLENQMDEYISKPLKPNLLVQTIAK 1016
>gi|386726113|ref|YP_006192439.1| sensor histidine kinase [Paenibacillus mucilaginosus K02]
gi|384093238|gb|AFH64674.1| sensor histidine kinase [Paenibacillus mucilaginosus K02]
Length = 1388
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 149/285 (52%), Gaps = 32/285 (11%)
Query: 408 SHLDARRKAEA---SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTV 462
S + +KAE ++ YKS+FLANMSHELRTP+ +++ L + L ++D+ LT +Q +
Sbjct: 677 SKTELEKKAEELALASRYKSEFLANMSHELRTPLNSLLILAKSLAANDEGNLTEDQIESA 736
Query: 463 CQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETV 522
I LL L+N ILDLSKVE+GKM++ E L L L + F +
Sbjct: 737 KIIHSGGLDLLTLINDILDLSKVEAGKMDIHREEVRLAGMLRHLQNQFGHVAQEKGLVFK 796
Query: 523 LDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582
L+L+ +P + D R QI NL++N+ KFTS G + +R + T
Sbjct: 797 LELAPGLPETIVTDSQRAEQILKNLLSNAFKFTSQGSVSVRIYAPGPGT----------- 845
Query: 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT 642
R F L + A+ EV DTG GI K +FE+F+Q D ST+
Sbjct: 846 ----RFFSGALVPEETVAL------------EVRDTGIGIPAGKQRAIFEAFQQADGSTS 889
Query: 643 RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
R++GGTGLGL+I R L +GGEI++ + G++ L+L G S
Sbjct: 890 RQYGGTGLGLTISRELARLLGGEIQLQSREGEGSVFTLFLPAGGS 934
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G +ILL +D K+L + G V + +G A+E L
Sbjct: 1265 LKGRKILLVDDDLRNTFALSKVLRQHGLNVVMADNGKLALEKL----------------- 1307
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
E+ D +L++MD MP MDGYEA IR + +H A +PI+ALTA AM D +K
Sbjct: 1308 ---ESEDG--VELVIMDIMMPVMDGYEAMKRIR-ANPKHAA--LPIIALTAKAMAGDREK 1359
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+ G N Y+TKP+D+++++S I
Sbjct: 1360 SIEGGANDYMTKPVDTDKLLSLI 1382
>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 828
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 36/271 (13%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++A+ +AE ++ KS FLANMSHE+RTPM A+IG ++L D LT++Q KKS
Sbjct: 266 IEAKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDML-LDTDLTDDQRDYAMTAKKSG 324
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+LL LLN ILD SK+E+G++ E +FD + ++ ++ + + VE + + ++
Sbjct: 325 ESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVIRPRVESKPVEILCHVGADV 384
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P V+GDPGR Q+ NL++N+ KFT SG I + +LD A DR KF
Sbjct: 385 PSFVKGDPGRYRQVLVNLMSNATKFTESGEIEL-----SLDVEAEEA----DRIKFHATV 435
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
R DT GI + K +F+ F+Q D S TRK+GGTG
Sbjct: 436 R--------------------------DTAMGIPEDKLSLIFDPFQQADGSMTRKYGGTG 469
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
LGL++ R L M G++ V + + G++
Sbjct: 470 LGLTVCRQLSRFMDGDVWVESEVNKGSIFHF 500
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 89/179 (49%), Gaps = 34/179 (18%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPC--SSSNSSSNQKRILEGLR----ILLAEDTPLIQIV 964
RE L+ M R + S+ C + Q +LE ++ ILLAED + Q +
Sbjct: 635 REKLLQMMARLIQTVKST---SECFEGARKKIVTQYSLLEEMKHSVCILLAEDNFVNQKL 691
Query: 965 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024
A +L K G V V +G EAL + +A +PD FDLI MD
Sbjct: 692 ARMMLTKAGYRVVVANNG---KEALEKYMA----------------SPDD--FDLIFMDV 730
Query: 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
QMP+MDG AT IR E G IPIVA+TAHAM D +KCL GM+ Y+TKPI E
Sbjct: 731 QMPEMDGLIATKTIR----EKGFDAIPIVAMTAHAMKGDREKCLEAGMDDYITKPIKRE 785
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D + ILE G V + +G V L + LAA G+P
Sbjct: 525 RILVVDDNLRNLEILTHILEFAGMAVVALKNGEAVVPILRKALAA----------GNP-- 572
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FDL + D QMP M GYE +R E R++P++AL++ M + C
Sbjct: 573 ------FDLCISDIQMPVMSGYEVARRVRNEEVP--LRDLPMIALSSF-MEREAGLCKEA 623
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPS 1098
G + +L+KPI E+++ + RL + + S
Sbjct: 624 GFDGFLSKPIHREKLLQMMARLIQTVKS 651
>gi|224102477|ref|XP_002312692.1| predicted protein [Populus trichocarpa]
gi|222852512|gb|EEE90059.1| predicted protein [Populus trichocarpa]
Length = 1136
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 163/548 (29%), Positives = 262/548 (47%), Gaps = 67/548 (12%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQV---PDGVASWHVAVSKFTNSPLLSAA 221
WYR+P+D TG+ G A P N + I Q G AS+ S A
Sbjct: 151 WYRQPVDSDTGKVYGDAVKTLPFITTNASWIEQALNSSQGYASFE--------SGWNGAQ 202
Query: 222 LPVWDPTTS--NKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAP 279
P++ T S ++++++ AL+S VE++ G +YL +Q G +L
Sbjct: 203 DPLFLNTVSLHGQAVLSLGFSAKALTS----FFNNVELYGGSLYLATQSGKVLVGGL--- 255
Query: 280 LLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHV-------QNAKLGHK 332
PN + V +N V S Y +K+ + HV N KL
Sbjct: 256 --------PN-TQIVIKENSV---------SLYMTKLNGDQIDHVGNVSCMPNNGKLQDS 297
Query: 333 QYYMD--TFFLNLKRLPIVGV-----IIIPREYIMGKADERAYKTLIILISASVCILVIG 385
Y++ + + ++ IVGV + P + + +L++ I I +
Sbjct: 298 VLYLEEAKYRVLCSQVEIVGVQSVYALAFPYNGLASSVNRSIEISLVLFIIMIAAIFISI 357
Query: 386 CICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL 445
IL++ +E+ L + LI ++A ++AE + KS A+ SH++R +A I GL+
Sbjct: 358 VSFILLVVRAAGREIHLCSALIKQMEATQQAERKSMNKSLAFASASHDIRAALAGITGLI 417
Query: 446 EILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
EI ++ + +E + + Q+ + L+ LLN ILD SK+E+GKM+LE EFDL K LE+
Sbjct: 418 EICYAEARAGSELDTNLQQMDDCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLED 477
Query: 506 LVDMFSVQCSNHNVETVLDLSD-NIPRN--VRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
VD++ V+ VLD D +I ++ V+GD ++ Q+ NL++N++KFT GH+ +
Sbjct: 478 AVDLYHPVGMKKGVDVVLDPYDGSILKHSRVKGDRVKLKQVLCNLLSNAVKFTFEGHVSV 537
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRE----DNKLALCFEVDDT 618
R W + S +++ R F + N F E + + FEV+DT
Sbjct: 538 RAWTQK--PSLENKIIASNQNGLWRCFLCLFFK---NKKEFDEVKQKQSSIEFVFEVNDT 592
Query: 619 GCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS--PGT 676
G GI + K ++VFE+F Q T GGTGLGL IV++LV MGGEI +V K + GT
Sbjct: 593 GKGIPREKQKSVFENFVQVK-ETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGKKGT 651
Query: 677 LMQLYLLL 684
+ + L
Sbjct: 652 CFKFNVFL 659
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R + + ++ + L GL++L+ +D + + V IL+ GATV V +G +A + +
Sbjct: 978 RSSEIQEARGNPSKDKSLSGLKLLVVDDNEISRKVTRHILKGHGATVEVFENGEEAFQLV 1037
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
L + S++ P +D ILMDC+MPKMDG EAT +IRK E +G +
Sbjct: 1038 RIGLHNQREHSHSIV---------LP-YDYILMDCEMPKMDGCEATRQIRKEEKFYGV-H 1086
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
IPI+A +A KK G + + K I+ E++ TI
Sbjct: 1087 IPILAFSADNSGGQGKKMKEAGTDGRVNKKINMEQLEETI 1126
>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1627
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 171/310 (55%), Gaps = 10/310 (3%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS+FLANMSHELRTP+ AI+G +++ +D L+ E + I ++
Sbjct: 1118 AKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHNDPALSGEYQQYIHIISQAGEY 1177
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N IL++SK+E+G++ L FDL L L +M ++ ++ D N+P+
Sbjct: 1178 LLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKLKGLQLQFDCDLNVPQ 1237
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL-----DTSKNTAEFPTDRKKFG 586
+ D ++ Q+ NL+NN+IKFT SG++ +R + + L + N +E
Sbjct: 1238 FIATDDKKLRQVLINLLNNAIKFTESGYVTLRVFSQPLLKHGSFSGDNQSELVKQLTPIL 1297
Query: 587 RAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
A + L + N N E + + FEV+DTG GI + + +FE+F Q + + +
Sbjct: 1298 PASES-LSEAPTNHPNHLE--LIPIYFEVEDTGLGIAPHELDRLFEAFSQTE-AGFKSSE 1353
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLA 706
GTGLGL I + V MGGEIKV + G++ +++ ++S + ++ VV LA
Sbjct: 1354 GTGLGLPISQRFVQLMGGEIKVSSQPGVGSIFAFKIIV-KPADSTSVESVNYSQKVVGLA 1412
Query: 707 TVGSMERMII 716
T ++R+++
Sbjct: 1413 TQQRIDRILV 1422
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ ED +++ K+L+ +G V +G +A+ + S
Sbjct: 1419 RILVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAITIWS------------------SW 1460
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P DLI MD +MP M+GYEAT I+ + G + + I+ALTA A D + L
Sbjct: 1461 KP-----DLIFMDIRMPVMNGYEATQYIKS--TPEGNQTV-IIALTASAFEEDRQMILSA 1512
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + ++ KP E +++ I
Sbjct: 1513 GCDDFIRKPFQEEEILTVI 1531
>gi|347756505|ref|YP_004864068.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
gi|347589022|gb|AEP13551.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
Length = 780
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 170/353 (48%), Gaps = 41/353 (11%)
Query: 393 TNGVSKEMKLRAELISHLDARRKAEASNNY-----KSQFLANMSHELRTPMAAIIGLLEI 447
T V +E+ L + ++ L+ R + KS FLANMSHE+RTPM +IG+ +
Sbjct: 202 TTAVIREISLARDRLASLNRRLEQARDAAQAAARAKSAFLANMSHEIRTPMNGVIGMSNL 261
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
L S L+ EQ + I+ S+ +LL +LN ILD SK+E+G + +E T FDL++ +E +
Sbjct: 262 LASTP-LSGEQREYLETIRSSAESLLVILNDILDFSKIEAGALHIEQTPFDLRECIESTL 320
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
D+ + S ++ + DN+P + DP R Q+ NL++N+IKFT G +++ E
Sbjct: 321 DVIAEPASRKRLDVAYLIEDNVPTTIVSDPTRFRQVLLNLLSNAIKFTEQGEVVVTVSAE 380
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
LD + + TKL AN+ + L +V DTG GI
Sbjct: 381 PLDDDEPSL--------------TKLT--AND-----RPRRYELRVDVRDTGIGIPPEAH 419
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
VF FEQ +T R +GGTGLGL+I + LV +GG I + GT L ++
Sbjct: 420 GRVFRDFEQATETTYRVYGGTGLGLAISKRLVEMLGGNIWFESEVGRGTTFHFTLPCESA 479
Query: 688 SESKQIYD----ADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGL 736
++Y + N + ++ + R I+ LR WH L
Sbjct: 480 PNQPRVYVRGSLPELENKIALVVDDNATNRHILEYQLRA----------WHAL 522
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+L+ ED + + +A ++LEK+G DG++ VEA+ +A E
Sbjct: 641 LRVLVVEDNVVNRKLAVRMLEKLGYQPDTASDGIEGVEAILGAVACEKP----------- 689
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+ MD QMP DG EA E+R + + +ALTA + + +
Sbjct: 690 -------YDLVFMDVQMPGKDGLEAVREVRAALAPDMCPR--FIALTAAVLEEERRAAFA 740
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
G++ YL KP +V+ +
Sbjct: 741 AGVDDYLGKPFTIHDLVAAL 760
>gi|410672264|ref|YP_006924635.1| PAS domain protein [Methanolobus psychrophilus R15]
gi|409171392|gb|AFV25267.1| PAS domain protein [Methanolobus psychrophilus R15]
Length = 1076
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 146/279 (52%), Gaps = 36/279 (12%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
S+FLA MSHE+RTPM AI+G ++L + +++N Q ++KS LL L+ +LD+S
Sbjct: 695 SEFLATMSHEIRTPMNAIMGFTDLL-METEMSNAQRHYTQIVQKSGGTLLNLIEDVLDIS 753
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K+ +GK+ELE +FDL ++ +D ++ +E L +N+P + GDP R+ QI
Sbjct: 754 KIAAGKLELERLDFDLLDLFKDFIDTMGLRAQLKGLELSYSLKENVPLLLHGDPSRLTQI 813
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
+NL N+IKFTS G +II E+ Q +N M
Sbjct: 814 LTNLTGNAIKFTSEGKVIIHVSVES--------------------------QNCDNVM-- 845
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
L F V DTG GI + K + +FE F Q D S +R+ GGTGLGL+I + LV M
Sbjct: 846 -------LRFSVSDTGIGIPEEKIDLIFEKFIQADSSNSRRFGGTGLGLAISKQLVKMMD 898
Query: 664 GEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV 702
G I V+ K G+ + L S++K + ++ N +
Sbjct: 899 GNIGVISKVGEGSEFWFTVWLEKQSKAKCVEKSEKENLI 937
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 23/131 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L ILL ED Q VA +L + V V +G +A++AL
Sbjct: 944 LNILLVEDDMHSQEVAQSMLINLEFDVDTVNNGAEAIKAL-------------------- 983
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+T +DL+LMD QMP++DG EAT IR ES+ ++IPI+ALTAHA+ D K
Sbjct: 984 ---ETQPYDLVLMDIQMPEIDGLEATKLIRSPESKVINKDIPIIALTAHAIEGDRDKFFE 1040
Query: 1070 VGMNAYLTKPI 1080
GMN Y++KPI
Sbjct: 1041 AGMNDYISKPI 1051
>gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 929
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 168/315 (53%), Gaps = 21/315 (6%)
Query: 403 RAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
AEL+ L ++ KAEA+N KS FLANMSHELRTP+ AI+G ++L D LT +Q T
Sbjct: 400 HAELMHQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDKNLTPKQKQT 459
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I +S LL L+N +L++SK+E+G++ L DL L+ + +MF ++ + ++
Sbjct: 460 LTSINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKL 519
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
++D + ++P +R D R+ Q+ N++ N++KFT G + ++ + + L S N D
Sbjct: 520 LVDKALDLPPYIRTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPL-RSPNLVPTHDD 578
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
NA+ + LC +V+DTG GI S+ +FE+F Q
Sbjct: 579 ----------------GNAVTEEHQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGR 622
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 701
G GLGL+I + + MGG I + K GT +Q+ + + A +++K + D P
Sbjct: 623 NSTEGA-GLGLAICQHCIELMGGNILIDSKEGQGTTVQIKVPVMA-TQTKSVDHLDVP-M 679
Query: 702 VVVLATVGSMERMII 716
V LA RM++
Sbjct: 680 VQTLAPGHPHIRMLV 694
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 43/150 (28%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+ ED P + ++ VG V V +G QAV
Sbjct: 690 IRMLVVEDNPENAQIVIDLMTSVGFEVQSVVNGQQAVACWQ------------------- 730
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGA--------------------RN 1049
T + +ILMD QMP M+GYEAT IR ES+ G+ N
Sbjct: 731 ----TWQPHVILMDWQMPVMNGYEATQTIRTLESQAGSTIHLQGSQDSSNSPSVLFPLNN 786
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKP 1079
I+ALTA +++C G + +L KP
Sbjct: 787 TIIIALTASVFEDTKQECFKAGCDDFLRKP 816
>gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Lyngbya sp. PCC 8106]
gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Lyngbya sp. PCC 8106]
Length = 1471
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 145/266 (54%), Gaps = 31/266 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A++KAE +NN KSQFL+ ++HELR+P+ I+G ++L+ D L ++Q V I +
Sbjct: 990 EAKQKAETANNAKSQFLSRVTHELRSPLNIILGFTQLLERCDNLDSQQQQQVNLIFNNGQ 1049
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL+L+N +LDL KVE+ +MEL FDL ++EL +MF ++ +E ++L +P
Sbjct: 1050 QLLKLINELLDLGKVEANRMELNVEWFDLYCLMDELQEMFKLEIQRKGLEFRVNLDSQVP 1109
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ ++ D ++ Q+ NLI N+IKFT G I +R N+D++ +
Sbjct: 1110 QQIQTDKTKLRQVLINLITNAIKFTDVGQICLRV---NVDSTLS---------------- 1150
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
N ED L L FEV+DTG GI + + +FE F QG S GTGL
Sbjct: 1151 -----------NQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGK-SGRNSQQGTGL 1198
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGT 676
GL+I R V MGGEI V GT
Sbjct: 1199 GLAICRYFVEMMGGEIGVNSTLGAGT 1224
>gi|428206402|ref|YP_007090755.1| integral membrane sensor hybrid histidine kinase [Chroococcidiopsis
thermalis PCC 7203]
gi|428008323|gb|AFY86886.1| integral membrane sensor hybrid histidine kinase [Chroococcidiopsis
thermalis PCC 7203]
Length = 964
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 161/297 (54%), Gaps = 32/297 (10%)
Query: 399 EMKLRAE--LISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN 456
E++LR E I A+ AE +N KS+FLANMSHELRTP+ AI+G +++ + L+N
Sbjct: 472 ELELRVEKRTIELQHAKIAAELANRAKSEFLANMSHELRTPLNAILGFSQLMNREPSLSN 531
Query: 457 EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSN 516
Q + I +S LL L+N +LDL+K+ESGKM L T+FDL L+ + +M +++ +
Sbjct: 532 RQQENLRIINRSGEHLLSLINDVLDLAKIESGKMTLYPTDFDLYVLLDSIKEMLALRAES 591
Query: 517 HNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576
++ ++ S+N+P+ ++ D ++ Q+ NL+ N+IKFTS G + +R
Sbjct: 592 KGLQLTIERSNNLPQYIKTDDKKLRQVLINLLGNAIKFTSVGSVTLR------------V 639
Query: 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ 636
E R+ NN + L FEV DTG GI ++ +VFE+F Q
Sbjct: 640 ELAGARQPI-----------TNN------QQPITLHFEVADTGAGIAPTEINSVFEAFVQ 682
Query: 637 GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
+ + + GTGLGL I ++ V MGG+I V + GT+ Q + S SK +
Sbjct: 683 TE-TGKQSQQGTGLGLPITKSFVELMGGKITVNSELGKGTVFQFNIQALESDVSKAV 738
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP M+GY+AT +I+ S + I+ALTA + ++ L G + ++ K
Sbjct: 802 LIWMDMRMPVMNGYDATQQIK---SHLQGQATAIIALTASTLEEEKAIVLSAGCDDFVRK 858
Query: 1079 PIDSE 1083
P E
Sbjct: 859 PFHEE 863
>gi|337265957|ref|YP_004610012.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
gi|336026267|gb|AEH85918.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
Length = 1255
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 171/325 (52%), Gaps = 43/325 (13%)
Query: 399 EMKLR-AELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
E+K+R AEL +AR++A ++ KS+FLANMSHE+RTPM ++G+ E+L + L +
Sbjct: 682 ELKMREAEL---REARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSN-LDPK 737
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q + I KS ALL ++N ILD SK+++G++ L+ F+L + +E++ + S +
Sbjct: 738 QKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEK 797
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
++E ++ + + GD GR+ QI +NL+ N++KFT GH+++ E +
Sbjct: 798 DLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERM-------- 849
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
PT K L V DTG GI + K + VFE F Q
Sbjct: 850 -PTGTK---------------------------LTISVTDTGIGIPEEKLKLVFEKFSQV 881
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE--SKQIYD 695
D S+TR+H GTGLGL+I LV MGG+I V G+ + L ++ + ++I
Sbjct: 882 DTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTLPSAEQQNGQRIMP 941
Query: 696 ADFPNTVVVLATVGSMERMIISQWL 720
D V++ ++ R I+++ +
Sbjct: 942 VDVTGARVLIVDDNAVNRAILTEQM 966
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 58/238 (24%)
Query: 880 SIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQ-IGSSRRDQPCSSSN 938
S+AN S +R + I P SS E L+ T+ R RH +G + QP +
Sbjct: 1037 SLANTS------YRDLGIDAQLIKPARSSVLLETLVATVQRHRHTTVGHAA--QPSAGEA 1088
Query: 939 SSSNQKRIL-------------------------EGLRILLAEDTPLIQIVACKILEKVG 973
++ Q++ L + L IL+AED + Q+V +IL + G
Sbjct: 1089 PNAPQRQSLAPSEQRAQLQPPPVRPRLPAVGGDGQRLDILVAEDNEVNQMVFTQILGETG 1148
Query: 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE 1033
+V +G +A++A ++ +P +ILMD MP+M G E
Sbjct: 1149 YGFEIVSNGRKALDAFGKL--------------NPC---------MILMDVSMPEMSGLE 1185
Query: 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
AT IR+ E + G ++PIV +TAHA+ D ++CL GM+ YL KPI ++ + R
Sbjct: 1186 ATAAIRRLEEDTGT-HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVER 1242
>gi|91793039|ref|YP_562690.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217]
gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217]
Length = 1659
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 159/283 (56%), Gaps = 37/283 (13%)
Query: 395 GVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+++++ + EL L A+ +A+A++ KS FLANMSHE+RTPM AI+G+L++++ D
Sbjct: 871 GINRDITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTD- 929
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
+T +Q V + + ++ +LL LLN ILD SK+++GK+ ++ L++ + EL + +
Sbjct: 930 MTPQQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAAN 989
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
++E + DL +IP V D R+ Q+ NL N+IKFT+ GH+I++
Sbjct: 990 MRRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQ---------- 1039
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
F KL +K+ L V DTG GI+ S+ + +F+
Sbjct: 1040 --------------VFNLKLSS-----------HKVRLRISVADTGIGINVSQLDKIFQG 1074
Query: 634 FEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F Q + ST+R+ GGTGLGL+I + LV MG E++V + G+
Sbjct: 1075 FMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVESQEGQGS 1117
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 26/150 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+GL IL+ ED L + V ++L+ GA V++ G++ V+ +
Sbjct: 1284 LQGLSILVVEDNALNRQVIDELLKLQGAIVTLAEGGIEGVKQV----------------- 1326
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIR-KSESEHGARNIPIVALTAHAMNADEK 1065
T FD+++MD QMP +DG EAT IR EH +PI+A+TA+A D +
Sbjct: 1327 ----TDQGMDFDIVIMDMQMPDIDGLEATRLIRADGRFEH----LPILAMTANASAIDRE 1378
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095
CL GMN ++ KP+D +V IL LT++
Sbjct: 1379 NCLRAGMNDHIGKPVDMSELVPRILTLTRD 1408
>gi|440705084|ref|ZP_20885892.1| HAMP domain protein [Streptomyces turgidiscabies Car8]
gi|440273186|gb|ELP61967.1| HAMP domain protein [Streptomyces turgidiscabies Car8]
Length = 1791
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 153/280 (54%), Gaps = 24/280 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1325 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADTNLTPKQVEFAETIHGAGSDLLQLI 1384
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S ++P + D
Sbjct: 1385 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKRLDFSVRVSPDLPATLHTD 1444
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR AE P ++
Sbjct: 1445 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGAEVPV-----------AIR 1484
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1485 EQLLEAGSLRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1544
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
R + +GGEI + G+ LYL L S Q Y
Sbjct: 1545 SREIARLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGY 1584
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1717 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTK 1773
Query: 1079 PIDSERMVSTI 1089
P+D + ++S +
Sbjct: 1774 PVDPDHLLSVM 1784
>gi|381158920|ref|ZP_09868153.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880278|gb|EIC22369.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 811
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 155/297 (52%), Gaps = 40/297 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLT 455
++ + L ELI +A+ +AEA++ +S+FLANMSHE+RTP+ ++G+L++L DD
Sbjct: 409 ITNQKALEQELI---EAKERAEAASQARSEFLANMSHEIRTPLNGVMGMLQVL--DDAEL 463
Query: 456 NEQYSTVCQIK-KSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
Q+ I SS LL ++N ILD SK+E+GK+ + + FDL L ++ F Q
Sbjct: 464 ETQFKEAVSIAMGSSQTLLTVINDILDFSKIEAGKLSIAHEPFDLNALLPSVIAAFGQQA 523
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+N V L+ ++P V GD R+ Q+ NL+ N+IKFT G + LDT
Sbjct: 524 ANKGVALRSGLAPDLPARVLGDAARLRQVLFNLLGNAIKFTERGEV-------RLDTRVL 576
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
+ + P ++ L F + DTG GI + + +FESF
Sbjct: 577 SGKDPA---------------------------RMRLEFAISDTGIGIPEDRLADIFESF 609
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
Q D S TR+ G+GLGL+IVR LV M G++ + GT ++ + + ++E +
Sbjct: 610 TQVDSSNTRRFQGSGLGLAIVRRLVGLMDGQVTIASTLGQGTEVRFDIRVETAAEDE 666
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 23/138 (16%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ L++L+ +D P V +L ++G V +G QA++ L
Sbjct: 685 KALQVLVVDDEPTNTKVLSMMLNRLGHQVQTAANGRQALDRLR----------------- 727
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
+ FDL+ MD MP+MDG EAT IR ++ ++PIVALTAHAM D ++
Sbjct: 728 ------SQAFDLVFMDASMPEMDGLEATRHIRDNQDGDLDPSVPIVALTAHAMKGDRERF 781
Query: 1068 LGVGMNAYLTKPIDSERM 1085
L GM+ YL+KP+D++ +
Sbjct: 782 LAAGMDDYLSKPVDAKAL 799
>gi|410464865|ref|ZP_11318255.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409982033|gb|EKO38532.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 722
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 148/274 (54%), Gaps = 30/274 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR+ AEA++ KS FLAN+SHELRTP+ IIG+ ++L D L +Q + I++++ A
Sbjct: 465 ARQAAEAASQAKSDFLANVSHELRTPLNGIIGMGQVLAGSD-LDPDQRQCLDDIQQAAGA 523
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLRL+ +LDLS++ES ++ L+N F L L+ + + ++ D+ ++P+
Sbjct: 524 LLRLVENLLDLSRLESDRLALDNHPFVLSSILQGVEAALAPLAQEKGLKLSTDIGGDVPQ 583
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD ++ Q +NL+ N++KFT SG + I A R
Sbjct: 584 LLCGDGDKLRQTLTNLVGNAVKFTPSGSVAIE------------------------ASRA 619
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ + QA E + + F V DTG GI ++ E +FE F Q D S+TR+ GGTGLG
Sbjct: 620 QPRLQAGP-----EGETVEVEFAVRDTGIGIAKADQERIFERFTQADASSTRRFGGTGLG 674
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
L+I R LV MGG++ V G++ + L G
Sbjct: 675 LAISRGLVEAMGGKLTVDSAPGQGSVFRFRLRFG 708
>gi|423064226|ref|ZP_17053016.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406713469|gb|EKD08637.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1376
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 33/272 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE--QYSTVCQIKKS 468
+A R A+A+N KS+FLANMSHE+RTPM AI+G ++L+S L +E Q V I S
Sbjct: 872 EATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQS---LVSEPRQQQYVKSIAAS 928
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
LL L+N ILDLSK+E+GKMEL DL+ LEE+ +F + + VE + +++DN
Sbjct: 929 GKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDN 988
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P+ + D R+ QI N++ N++KFT G + I ++ T+ NT P
Sbjct: 989 LPKAIMFDEVRLRQILLNMVGNALKFTDEGWVKI-----SVVTNSNT---PL-------- 1032
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
NA N ++ ++L + DTG GI + + +F+SF Q + +TRK+GG+
Sbjct: 1033 ----------NAEN--PESTISLEIAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGS 1080
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GLGL+I + L +GG I + + G+ L
Sbjct: 1081 GLGLAITKRLTQMLGGTISLESQLGKGSQFTL 1112
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
D+I+MD +MP++DG EAT +++++ + IPI+ LTA +++ D ++ + + +L
Sbjct: 1187 DVIMMDLRMPELDGVEATKQLKENPV---TKQIPIIILTASSLDRDHQELSSI-QDGFLH 1242
Query: 1078 KPI 1080
KP+
Sbjct: 1243 KPV 1245
>gi|376006951|ref|ZP_09784158.1| putative two-component hybrid sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
gi|375324692|emb|CCE19911.1| putative two-component hybrid sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
Length = 1375
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 33/272 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE--QYSTVCQIKKS 468
+A R A+A+N KS+FLANMSHE+RTPM AI+G ++L+S L +E Q V I S
Sbjct: 872 EATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQS---LVSEPRQQQYVKSIAAS 928
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
LL L+N ILDLSK+E+GKMEL DL+ LEE+ +F + + VE + +++DN
Sbjct: 929 GKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDN 988
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P+ + D R+ QI N++ N++KFT G + I ++ T+ NT P
Sbjct: 989 LPKAIMFDEVRLRQILLNMVGNALKFTDEGWVKI-----SVVTNSNT---PL-------- 1032
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
NA N ++ ++L + DTG GI + + +F+SF Q + +TRK+GG+
Sbjct: 1033 ----------NAEN--PESTISLEIAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGS 1080
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GLGL+I + L +GG I + + G+ L
Sbjct: 1081 GLGLAITKRLTQMLGGTISLESQLGKGSQFTL 1112
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
DLI+MD +MP++DG EAT +++++ + + IPI+ LTA +++ D ++ + + +L
Sbjct: 1186 DLIMMDLRMPELDGVEATKQLKENPA---TKQIPIIILTASSLDRDHQELSSI-QDGFLH 1241
Query: 1078 KPI 1080
KP+
Sbjct: 1242 KPV 1244
>gi|428217026|ref|YP_007101491.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988808|gb|AFY69063.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1584
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 146/265 (55%), Gaps = 8/265 (3%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS+FLANMSHELRTP+ AI+GL +++ + L EQ + I S
Sbjct: 1121 AKESADAANIAKSKFLANMSHELRTPLNAILGLTQLMSDEPMLGKEQKENLSIINNSGEH 1180
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +L++SK+ESGK L ++F+L L L+ M + ++ ++N+P+
Sbjct: 1181 LLSLINDVLEMSKIESGKAILNQSKFNLHNLLNNLISMLQWRAREKQLQLEFVCAENVPK 1240
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ DP ++ Q+ NL N+IKFT +G +I+ W E T PTD + +
Sbjct: 1241 YIEADPVKLRQVLINLTGNAIKFTQAGKVILSVWVE---PEPPTEIIPTDNE----PNIS 1293
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
Q+A N N + DN+L L F+V DTG GI + VF F Q + S R GTGLG
Sbjct: 1294 VDPQEAANRSNNQLDNQLDLWFKVIDTGVGIAPEDLKEVFNPFIQSE-SGLRSTEGTGLG 1352
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
LSI R V MGG+I V GT
Sbjct: 1353 LSISREFVRLMGGDITVTSTLDQGT 1377
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 25/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RILL ED + Q VA ++L+K+G + + +GL+A+ AL R++
Sbjct: 1449 VRILLVEDNLVNQKVAVRMLQKIGYSADIANNGLEAIAAL---------RQKD------- 1492
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+DL+LMD QMP+MDG EATI I + E + I+A+TA+AM+ D +CL
Sbjct: 1493 -------YDLVLMDVQMPEMDGIEATIAILQEWPED--QQPIIIAMTANAMSQDRDRCLA 1543
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ ++ KPI R+ ST++
Sbjct: 1544 SGMSDHIAKPIKLARLQSTLM 1564
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 113/228 (49%), Gaps = 26/228 (11%)
Query: 198 VPDGVASWHVAVSKFTNSPL-LSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVE 256
+ G +W S +++ + ++A P++D +N++++ V+ + L+ + Q + EL
Sbjct: 181 ISQGRYAWSRPYSSESSAAVEVTAVTPIYD---ANQNLLGVLSIELNLNQLSQFLAELDI 237
Query: 257 VHSGHIYLTSQEGYLLATST-NAPLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSK 315
SG Y+ + G L+A+S + P++ NS ++A++S+N +IQ+ A+ L +E+
Sbjct: 238 SKSGQAYIIERSGRLIASSAPDTPIMQNSMR----LRAIESENSLIQLSAEGLANEFTDL 293
Query: 316 VPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPI--------VGVIIIPREYIMGKADERA 367
VQ +KL + D F ++ PI + V+ +P+ M + + +
Sbjct: 294 EQI-----VQESKLEITEEGRDIF---VQVSPIGDSSDVDWLVVVAVPKADFMQEVKDGS 345
Query: 368 YKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRK 415
+TL++ I A + +G + + + K++ + A+ ++ D +K
Sbjct: 346 LQTLLLCIVALLVATELGIVMARWIVKPI-KDLNIAAKQLTTQDFSQK 392
>gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1376
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 154/272 (56%), Gaps = 33/272 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE--QYSTVCQIKKS 468
+A R A+A+N KS+FLANMSHE+RTPM AI+G ++L+S L +E Q V I S
Sbjct: 872 EATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQS---LVSEPRQQQYVKSIAAS 928
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
LL L+N ILDLSK+E+GKMEL DL+ LEE+ +F + + VE + +++DN
Sbjct: 929 GKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEKKVELIREINDN 988
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P+ + D R+ QI N++ N++KFT G + I ++ T+ NT P
Sbjct: 989 LPKAIMFDEVRLRQILLNMVGNALKFTDEGWVKI-----SVVTNSNT---PL-------- 1032
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
NA N ++ ++L + DTG GI + + +F+SF Q + +TRK+GG+
Sbjct: 1033 ----------NAEN--PESTISLEIAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGS 1080
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
GLGL+I + L +GG I + + G+ L
Sbjct: 1081 GLGLAITKRLTQMLGGTISLESQLGKGSQFTL 1112
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
D+I+MD +MP++DG EAT +++++ + IPI+ LTA +++ D ++ + + +L
Sbjct: 1187 DVIMMDLRMPELDGVEATKQLKENPV---TKQIPIIILTASSLDRDHQELSSI-QDGFLH 1242
Query: 1078 KPI 1080
KP+
Sbjct: 1243 KPV 1245
>gi|410646534|ref|ZP_11356984.1| sensor protein [Glaciecola agarilytica NO2]
gi|410133706|dbj|GAC05383.1| sensor protein [Glaciecola agarilytica NO2]
Length = 911
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 41/311 (13%)
Query: 379 VCILVIGCICILILTNG---VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELR 435
V I+ IL++ N +S+++++R ++ A+ +A+ +N KSQFLANMSHE+R
Sbjct: 495 VVIVAFSMTLILLMNNRQAVLSRKVEIRTRALAL--AKHEADKANKAKSQFLANMSHEIR 552
Query: 436 TPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 495
TP+ AIIG ++ K + L Q S + +I SS LL ++N ILD+SK+ES K+ LE
Sbjct: 553 TPLNAIIGFSQLAKRSNDLAEHQ-SYIHKISSSSDTLLAIINDILDISKIESEKLVLEEM 611
Query: 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV--RGDPGRVFQIFSNLINNSIK 553
EFDL L MF S NV+ L+ DN+P + +GDP R+ QI NL +N+IK
Sbjct: 612 EFDLHDILNRASTMFEPGASIKNVDWALE--DNLPAGLFFKGDPLRIEQIVINLCSNAIK 669
Query: 554 FTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613
FT G I++ +T+K+ PT +
Sbjct: 670 FTQQGRIVLHAAIVEQNTNKSP---PTA----------------------------CIQI 698
Query: 614 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673
V DTG GI ++ +F +F Q D STTR+ GGTGLGL+I L M G + + +
Sbjct: 699 TVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTIESEEG 758
Query: 674 PGTLMQLYLLL 684
G+ L + L
Sbjct: 759 VGSEFTLTITL 769
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RIL+AED + Q+V +IL +G VV +G AV A +
Sbjct: 790 LQGKRILVAEDNDINQVVITEILNSLGLKALVVDNGALAVHAASHH-------------- 835
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDLILMDCQMP +DGY AT +IR+ +H ++PI+ALTA M ++K
Sbjct: 836 ---------HFDLILMDCQMPVLDGYAATEQIRQ---QHDKSSLPIIALTADVMQESKQK 883
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
VG N +++KP++ E++ + +L
Sbjct: 884 AQQVGFNEHVSKPVNIEKLTAVLL 907
>gi|373487511|ref|ZP_09578178.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372008586|gb|EHP09211.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 844
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 38/265 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DAR +A +S+FLANMSHE+RTPM +IG+ ++L L EQ I+ S+
Sbjct: 332 DARDEALQLAGLRSEFLANMSHEIRTPMNGVIGMTDLLIRT-PLNAEQVDYATTIRSSAM 390
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LLRL+N ILD SK+E+GKM LE FDLQ+ L++L+ V+ N VE +S + P
Sbjct: 391 TLLRLINDILDFSKIEAGKMTLEKIGFDLQELLDDLLAALGVKAHNRGVELATWVSGDAP 450
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ Q+ SNL +N++KFT G ++IR
Sbjct: 451 TRLMGDPIRLRQVLSNLTDNALKFTEHGSVLIR--------------------------- 483
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+ R+++ L FEV D+G G+ Q +F+SF QGD STTRK+GGTGL
Sbjct: 484 --------ITLQSRDEDSAVLRFEVQDSGIGMSQEVAGRLFQSFFQGDSSTTRKYGGTGL 535
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPG 675
GL+I + + M G I V +++PG
Sbjct: 536 GLAICKKIAELMDGSIGV--ESTPG 558
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 28/148 (18%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA IL+K+G V +G +A+EA +RR++
Sbjct: 721 ILLAEDNLVNQRVALAILKKMGLKADVAANGREALEA---------NRRKA--------- 762
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+D+ILMDCQMP+MDG++AT IR E E R +PI+A+TA+AM+ D ++C+ G
Sbjct: 763 -----YDVILMDCQMPEMDGFQATRLIRDGEGE--GRRVPILAMTANAMHGDRERCVEAG 815
Query: 1072 MNAYLTKPIDSERMVSTILRLTKNMPSE 1099
M+ Y+ KP+ + S +L L + +P++
Sbjct: 816 MDDYIAKPV---TLDSLMLLLHRWLPAD 840
>gi|392966499|ref|ZP_10331918.1| GAF sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
gi|387845563|emb|CCH53964.1| GAF sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
Length = 1147
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 148/275 (53%), Gaps = 27/275 (9%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYA 471
++ E + YKS+FLANMSHELRTP+ +++ L ++L + LT++Q I KS
Sbjct: 468 KELEVTGKYKSEFLANMSHELRTPLNSVLILAKLLSENKNGNLTDKQTEYANTIYKSGTN 527
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSK+E+GK+++ E +Q + +L MFSV V+ V ++P
Sbjct: 528 LLELINDILDLSKIEAGKIDINIEEVPVQSIIRDLSQMFSVVAEEKGVQFVKQTEPSVPS 587
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+R D R+ Q+ NL++N+ KFT I + A P + FG +
Sbjct: 588 AIRTDKQRLEQVIRNLLSNAFKFTPRDGSITLSF----------ATAPA-HQLFGSESLS 636
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
KQ L V DTG GI K + +FE+F+Q D ST+RK+GGTGLG
Sbjct: 637 NAKQ--------------VLAISVTDTGIGIPPEKQQIIFEAFQQADGSTSRKYGGTGLG 682
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
LSI + LV ++GGE+ + + G+ +YL + A
Sbjct: 683 LSISKELVRRLGGEMGLTSEVGKGSTFTIYLPVDA 717
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 16/169 (9%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILL-----AEDTPLIQIVACKILEKV--GATVSVVPDG 982
R P +SS ++ R+++ L + L AE +PL + VA + + G V +V D
Sbjct: 976 RISPVVIRDSSQSKNRLIDELELFLYKVQEAERSPLPKQVAVSTSDGMLKGRKVLLVDDD 1035
Query: 983 LQAVEALNRMLAAESSRRRSLLQGSPSET----PDTPRFDLILMDCQMPKMDGYEATIEI 1038
++ V AL+ +L E L G E + P D++LMD MP+MDGYEAT I
Sbjct: 1036 MRNVFALSTLL--EEYDMDVLTAGDGKEALELLDEQPGVDIVLMDIMMPEMDGYEATRRI 1093
Query: 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVS 1087
R ++ + +P++ALTA AM D +KC+ G + Y+TKP+++ +++S
Sbjct: 1094 RANQR---FQKLPVIALTAKAMTGDREKCIEAGASDYITKPVNNTQLIS 1139
>gi|423066488|ref|ZP_17055278.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406712004|gb|EKD07201.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1366
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 152/269 (56%), Gaps = 42/269 (15%)
Query: 403 RAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL + L A+ A+ +N+ KS+FLANMSHELRTP+ AI+G ++L + LT++Q
Sbjct: 879 QAELFTQLQQAKEAADTANHAKSEFLANMSHELRTPLNAILGFTQLLGQNSGLTSQQQDY 938
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I++S LL L+N +LDLSK+E+G + L T F+L+ LE + M ++ S+ N+
Sbjct: 939 LQIIQQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVL 998
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ L +IP V+ D ++ Q+ NL++N+IKFT +G++ +RG
Sbjct: 999 DIQLDQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTLRG----------------- 1041
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+F + + Q L FEV+DTG GI + E +F+ F Q D
Sbjct: 1042 ------SFVSSVSQ---------------LYFEVEDTGPGITPDEQERLFQPFVQTD--V 1078
Query: 642 TRKH-GGTGLGLSIVRTLVNKMGGEIKVV 669
R+H GTGLGL+I + VN MGG+I +V
Sbjct: 1079 GRRHQQGTGLGLAISQQYVNLMGGKITIV 1107
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LILMD +MP MDGY+AT +IR ++ G I I+A+TAHA ++ L G N + K
Sbjct: 1203 LILMDMRMPVMDGYQATQQIR--QTPQGQSTI-IIAITAHAFESERSSILATGCNDLIHK 1259
Query: 1079 PIDSERMVSTI 1089
P + + ++ I
Sbjct: 1260 PFNIKTLLDCI 1270
>gi|410642520|ref|ZP_11353030.1| sensor protein [Glaciecola chathamensis S18K6]
gi|410137817|dbj|GAC11217.1| sensor protein [Glaciecola chathamensis S18K6]
Length = 911
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 162/313 (51%), Gaps = 45/313 (14%)
Query: 379 VCILVIGCICILILTNG---VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELR 435
V I+ IL++ N +S+++++R ++ A+ +A+ +N KSQFLANMSHE+R
Sbjct: 495 VVIVAFSMTLILLMNNRQAVLSRKVEIRTRALAL--AKHEADKANKAKSQFLANMSHEIR 552
Query: 436 TPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 495
TP+ AIIG ++ K + L Q S + +I SS LL ++N ILD+SK+ES K+ LE
Sbjct: 553 TPLNAIIGFSQLAKRSNDLAEHQ-SYIHKISSSSDTLLAIINDILDISKIESEKLVLEEM 611
Query: 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV--RGDPGRVFQIFSNLINNSIK 553
EFDL L MF S NV+ L+ DN+P + +GDP R+ QI NL +N+IK
Sbjct: 612 EFDLHDILNRASTMFEPGASIKNVDWALE--DNLPAGLFFKGDPLRIEQIVINLCSNAIK 669
Query: 554 FTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613
FT G I++ +T+K+ PT C
Sbjct: 670 FTQQGRIVLHAAIVEQNTNKSP---PTA------------------------------CI 696
Query: 614 E--VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
+ V DTG GI ++ +F +F Q D STTR+ GGTGLGL+I L M G + + +
Sbjct: 697 QITVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTIESE 756
Query: 672 NSPGTLMQLYLLL 684
G+ L + L
Sbjct: 757 EGVGSEFTLTITL 769
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 26/144 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G RIL+AED + Q+V +IL +G VV +G AV+A +
Sbjct: 790 LQGKRILVAEDNDINQVVITEILNSLGLKALVVDNGALAVQAASHH-------------- 835
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FDLILMDCQMP +DGY AT +IR+ +H ++PI+ALTA M ++K
Sbjct: 836 ---------HFDLILMDCQMPVLDGYAATEQIRQ---QHDKSSLPIIALTADVMQESKQK 883
Query: 1067 CLGVGMNAYLTKPIDSERMVSTIL 1090
VG N +++KP++ E++ + +L
Sbjct: 884 AQQVGFNEHVSKPVNIEKLTAVLL 907
>gi|381188108|ref|ZP_09895670.1| PAS domain protein [Flavobacterium frigoris PS1]
gi|379649896|gb|EIA08469.1| PAS domain protein [Flavobacterium frigoris PS1]
Length = 588
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 188/370 (50%), Gaps = 55/370 (14%)
Query: 313 GSKVPPGHVIHVQNAKLGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLI 372
GS++ I + N++LG FF++ + P+ + + + + E L
Sbjct: 100 GSQLLGKQRIKLINSRLG--------FFISDETKPVFNIFL--NKIFKDRVKESCEVVLN 149
Query: 373 ILISASVCILVIGCI------CILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQF 426
+ + +L+ G I C +I+ + +++ + ELI A+ +A A++ K+ F
Sbjct: 150 VKDTRPTYVLLTGIISEDPKECHIIMVDFTERKL-IEMELIK---AKEQAMAASKAKTDF 205
Query: 427 LANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVE 486
LANMSHE+RTP+ IIG +L + L Q + I +S+ L+ ++N +LD SK+E
Sbjct: 206 LANMSHEIRTPLNGIIGFTGLLMGSN-LDKSQEEYMSTINESANTLIHIVNEVLDFSKIE 264
Query: 487 SGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSN 546
+GK+ELE +E DL + +++D+F Q ++ +L++ IP+ V+ D R+ Q+ N
Sbjct: 265 AGKLELEISETDLFELSNQVIDLFKYQTLEKKIDLILNIDPQIPQFVQADVTRLKQVLVN 324
Query: 547 LINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 606
LI+N++KFT SG I + + E PT K +
Sbjct: 325 LISNAVKFTYSGTITL-----------DVTETPTSNKYYS-------------------- 353
Query: 607 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEI 666
+ F V DTG GI+++ E +F+SF Q D ST R+ GGTGLGL+I L++ MG ++
Sbjct: 354 ---TINFSVRDTGIGIEEANNEKIFKSFMQCDSSTCRQFGGTGLGLTISNQLLDLMGSKL 410
Query: 667 KVVKKNSPGT 676
V K G+
Sbjct: 411 NVESKFGEGS 420
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 28/164 (17%)
Query: 919 FRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSV 978
F++ +Q + + S +N S + L +IL+ ED + +A +L+++ +
Sbjct: 428 FKKSNQSATKASENGSSGNNDSWSTLSPLNYNKILVVEDNKINMFLAKTLLKRIIPNCDI 487
Query: 979 VP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATI 1036
+ DG +E + E PD ++LMD QMP +GY+A
Sbjct: 488 IEAVDGNDGIEKYTK------------------EQPD-----IVLMDIQMPNKNGYDAAS 524
Query: 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
+IRK + GA IPI+A+TA + +++KC VGM+ Y+ KPI
Sbjct: 525 DIRKLK---GAEKIPIIAMTAGILTGEKEKCFEVGMDDYMPKPI 565
>gi|386828000|ref|ZP_10115107.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428884|gb|EIJ42712.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 984
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 230/475 (48%), Gaps = 71/475 (14%)
Query: 383 VIGCICIL-ILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAI 441
VIG + +L +T EM L+ +A+ AE +N KSQFLA+MSHELRTP+ I
Sbjct: 457 VIGLLTMLEDITQRKQTEMNLQ-------NAKESAERANKAKSQFLASMSHELRTPLNGI 509
Query: 442 IGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501
+G ++L+ + + +Q + I++S LL L+N +LDL+K+E+G+ EL+ E +
Sbjct: 510 LGYAQLLQQNYEFNQKQLEGLSIIQRSGEHLLTLINDVLDLAKIEAGRFELQLGEIRFHQ 569
Query: 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHII 561
L +L +FS++ + V ++S ++P VRGD R+ Q+ NL+ N++KFT G I
Sbjct: 570 FLNDLNSLFSMRSTQKGVAFFYNMSSHLPTVVRGDEKRLRQVLINLLGNAVKFTEQGGRI 629
Query: 562 IRGWCENLDTSKNTAEFP-TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC 620
N+ AE P TD +K + F + DTG
Sbjct: 630 ----TLNVGYVTTDAEIPSTDEQK--------------------------IRFLISDTGI 659
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHG---GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTL 677
GI Q + + +F F+Q D + GTGLGL+I RTLV MGG ++V ++ G
Sbjct: 660 GIPQEQLDKIFLPFQQADNKIHHQINAAEGTGLGLTISRTLVEMMGGCLQV--SSTIGVG 717
Query: 678 MQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLT 737
Q + + S + Q TV+V+ + S +++I Q +KK + +++E +
Sbjct: 718 SQFWFDIHLPSLTTQ--------TVMVVEAIPSPQKIIGYQEGKKKVLIIDDSAENRYML 769
Query: 738 QILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY--VVVIDIALLDLSSDL 795
L L+ I +SNG E L+ KAL VY +++D+ + ++
Sbjct: 770 VNLLSPLEFILAEASNGV-------EGLE------KAL--QVYPDAILVDLLMPEMDGFA 814
Query: 796 WREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLL 850
L L F + A ++ T I+T G N+ V KP+Y +++++
Sbjct: 815 LIRHLRELPAFKNTLIIA--ISASTFEHIQTASYSAGCNVFVGKPIYINNLLEII 867
>gi|427403266|ref|ZP_18894263.1| hypothetical protein HMPREF9710_03859, partial [Massilia timonae CCUG
45783]
gi|425718002|gb|EKU80956.1| hypothetical protein HMPREF9710_03859, partial [Massilia timonae CCUG
45783]
Length = 1334
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 149/273 (54%), Gaps = 31/273 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE + KS+FLANMSHE+RTP+A +IG+L D L + + + + ++ A
Sbjct: 893 AKERAEDATRQKSEFLANMSHEMRTPLAGVIGMLGFALRDAALRDNTREQILRGQANAEA 952
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N +LD SK+E+GK+ +E +FDL +++ + +F Q + H+++ + + DN+PR
Sbjct: 953 LLAIINDLLDFSKIEAGKLTVERIDFDLHEKMRNVASLFQEQAAGHSLDFSVQVDDNVPR 1012
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GDP RV Q+ NLI N+ KFT SG + ++ C P D+
Sbjct: 1013 FLVGDPTRVRQVLVNLIGNAFKFTRSGSVTVQVECR-----------PDDQD-------- 1053
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R + F V DTG GI +F+ FEQ D +TTR++GGTGLG
Sbjct: 1054 ------------RPPGMHMIRFTVRDTGIGIPSDALPRLFQKFEQADTTTTRRYGGTGLG 1101
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
L+I R LV MGG I V + G++ + L L
Sbjct: 1102 LAICRQLVELMGGTIGVNSQEGKGSVFSVLLPL 1134
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 39/162 (24%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L IL AED P QI+A ++E++G + +V +GL+AV A R
Sbjct: 1155 LSILCAEDFPTNQIIARLMVEELGHAIDIVDNGLEAVAACARK----------------- 1197
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-------IVALTAHAMNA 1062
R+DL+LMD +MP+MDG AT IR G ++ P IVALTA+A +
Sbjct: 1198 ------RYDLVLMDGRMPEMDGASATRLIRAG----GPQDAPVIDPHLMIVALTANASDE 1247
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTILR-----LTKNMPSE 1099
D + L GM+A+LTKPID + + + R L + +P E
Sbjct: 1248 DRTRYLACGMDAFLTKPIDEAALHTQLARAIERQLQRGVPLE 1289
>gi|357442269|ref|XP_003591412.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
gi|355480460|gb|AES61663.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
Length = 646
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 186/345 (53%), Gaps = 21/345 (6%)
Query: 334 YYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCICILILT 393
Y + + +++ + V V+ +P+ + K L +LI V I I + L L
Sbjct: 301 YLIHCYPIDIMGIESVHVLAVPQNGSLIFNPSHKGKGLTLLIVMMVMIF-IAILSFLFLN 359
Query: 394 NGVSK-EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI----- 447
GV+K EM L A L+ +A +AE N KS A SH+LR +A +IGL+E+
Sbjct: 360 LGVTKREMHLCASLMQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLIEMSSKLV 419
Query: 448 -----LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
L+++ + ++E + + Q+ + LL LLN ILD SK+E+GKM+LE EFDL
Sbjct: 420 VTNSKLETNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSNL 479
Query: 503 LEELVDMFSVQCSNHNVETVLD-LSDNIPRN--VRGDPGRVFQIFSNLINNSIKFTSSGH 559
LE++VD++ VE VLD + ++ ++ V+GD ++ Q+ NL++N++KFT GH
Sbjct: 480 LEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAVKFTDEGH 539
Query: 560 IIIRGWCE--NLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN-NAMNFREDNK--LALCFE 614
I +R W + L SK + K F K K+ + A+N + + + FE
Sbjct: 540 ITVRAWTQKAKLQNSKTKTNHKSVMKHLSWLFNKKDKECEDIEAVNLAQQDPCLMDFVFE 599
Query: 615 VDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
VDDTG GI + ++VFE++ Q ++ + GTGLGL IV++LV
Sbjct: 600 VDDTGKGIPKENHKSVFENYVQVKENSVGQ-VGTGLGLGIVQSLV 643
>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
DSM 5476]
gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
DSM 5476]
Length = 1068
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 143/269 (53%), Gaps = 34/269 (12%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
KAEA++ K +FL+ MSHE+RTP+ AI+G+ I T + + + ++ SS LL
Sbjct: 550 EKAEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQHLDDTKKVENCLKKLTLSSNHLL 609
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
L+N +LD+SK+ESGK+EL + FD + LE L +++ Q +E L+ + +
Sbjct: 610 ALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKGLEYKTVLTGEVDETL 669
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD R+ QI +NL++N++KFT +G I R
Sbjct: 670 VGDSLRLNQILTNLLSNALKFTPAGGSI--------------------------QLRVSQ 703
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
K Q +N + L FEV DTGCGID+ ++ +FESFEQ D S T K+GGTGLGLS
Sbjct: 704 KVQGSNTVR--------LHFEVTDTGCGIDEQNYQKIFESFEQEDSSVTNKYGGTGLGLS 755
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
IV+ MGG + V + G+ + L
Sbjct: 756 IVKRFSELMGGSVSVSSRLGEGSTFAVEL 784
Score = 98.2 bits (243), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 23/157 (14%)
Query: 925 IGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQ 984
I S +++ P S S + G +LL ED L + +A ++L GA V DG++
Sbjct: 919 ISSLKQEHPLFDSQDSMDAD--FHGKHLLLVEDNQLNREIAVELLRITGAEVECAKDGIE 976
Query: 985 AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESE 1044
AVE L SP E +DLILMD QMP+MDG EAT +IRK +
Sbjct: 977 AVE---------------LFSQSPVE-----HYDLILMDIQMPRMDGLEATRQIRKLDRP 1016
Query: 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
A ++PIVA+TA+A DE K GMNA+L+KP+D
Sbjct: 1017 D-AGSVPIVAMTANAFAEDEHKSKAAGMNAHLSKPLD 1052
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++L +D P +L ++G V +G AV S ++ + S
Sbjct: 802 LKVLAVDDDPDTISYIHSLLHRMGVQVECAENGNLAV---------------SQVRDAHS 846
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
D FD+ + C++P +DG+E T I E V +TA+ EK+
Sbjct: 847 RQED---FDICFVSCRLPDLDGFETTRRIH----EIVPNETTAVLITAYDAAEIEKEAAQ 899
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMP 1097
G + L KP+ + + TI L + P
Sbjct: 900 SGASGVLAKPLFASTITQTISSLKQEHP 927
>gi|428217660|ref|YP_007102125.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
gi|427989442|gb|AFY69697.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
Length = 892
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 165/294 (56%), Gaps = 15/294 (5%)
Query: 390 LILTNGVSKEMKL-RAELISHLDARR-KAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
L+ + GV + + A+LI+ ++A+ + + KSQFLANMSHELRTPM AIIG ++
Sbjct: 586 LLASFGVQAAIAIGNAQLINQIEAQNAQLLEATQLKSQFLANMSHELRTPMNAIIGFSQV 645
Query: 448 L--KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505
L + D L+ Q + +I ++ +LL L+N ILDLSK+E+G+ME F L + ++
Sbjct: 646 LLRQRRDSLSENQQDMLERILRNGKSLLELINDILDLSKIEAGRMEASPEFFHLDELIQH 705
Query: 506 LVDMFSVQCSNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRG 564
D SN + + + I R + DP RV Q+ +NL++N+IKFT G + +
Sbjct: 706 TCDSLQPLASNKGLNFFFN--NQIGRCTIYHDPVRVRQVITNLVSNAIKFTDHGDVKVVL 763
Query: 565 WCENLDTSKNTAEFPTDRK-KFGRAFRTKLK--QQANNAMNFREDNKLALCFEVDDTGCG 621
+ N+ + DR +F +L + N A + + D + + +V DTG G
Sbjct: 764 HYSQPEPIANSED---DRDGQFIHQSSVELDHIEHLNQADSNKLDRQPPVIIDVCDTGIG 820
Query: 622 IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
ID T+FE F Q D S+TR+HGGTGLGL+I LV+ MGGEI + ++PG
Sbjct: 821 IDAEHQRTIFEQFRQVDQSSTRRHGGTGLGLAITEQLVHMMGGEISLA--STPG 872
>gi|254413568|ref|ZP_05027338.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179675|gb|EDX74669.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1315
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 160/288 (55%), Gaps = 31/288 (10%)
Query: 395 GVSKEMKLRAEL-ISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G+++++ R ++ ++ +A+ AE +N KS FLANMSHELRTP+ AI+G ++++
Sbjct: 822 GIAEDITDRKQIELALTEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRSST 881
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
+ + I +SS LL L+N++LDLSK+E+G++ L T FDL L ++ ++F ++
Sbjct: 882 FPADYQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIK 941
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573
+ ++ + D SD +P+ V+ D ++ Q+ NL++N+ KFT G I ++ +
Sbjct: 942 ARDKGLQLLFDYSDQVPQYVQTDAVKLRQVLINLLSNAFKFTQEGGISVK-----VSRGI 996
Query: 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633
+ E PT K ++ L FE++DTG G+ + E++F++
Sbjct: 997 DVGETPTANKP----------------------EEITLQFEIEDTGAGMAAEELESIFDA 1034
Query: 634 FEQGDPSTTRKHG-GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q T ++H GTGLGLSI R V MGG++ V + GT+ +
Sbjct: 1035 FIQS--KTGKQHQEGTGLGLSISRKFVQLMGGDLTVASQVDQGTVFRF 1080
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP MDGYEAT +I+ + + I+A+TA ++++ + L +G + +++K
Sbjct: 1157 LIFMDMRMPIMDGYEATQQIKATTQ---GQATAIIAVTASSLDSQKAVILSMGCDGFISK 1213
Query: 1079 PI 1080
P
Sbjct: 1214 PF 1215
>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 823
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 143/275 (52%), Gaps = 41/275 (14%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
+L L S A + A+++N KS FLA MSHE+RTPM ++G+ E+L D LT EQ
Sbjct: 162 QLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLGTD-LTKEQSR 220
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
V +++S ALL ++N ILD SK+E+G+MELE FDL++ + +F+ + +E
Sbjct: 221 YVETVRRSGEALLSIINNILDFSKIEAGRMELETIPFDLRQLASDAAAIFAEDAARKGLE 280
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
L+L +PR GDPGR+ Q+ NL+ N++KFT G +
Sbjct: 281 LSLELERGLPRMFLGDPGRLRQVMVNLLGNAVKFTLKGGV-------------------- 320
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS 640
R LK A+ + V+DTG GI +F F QGD S
Sbjct: 321 ---------RLTLKLAEEPAL---------VRISVEDTGIGIAPEARLRIFNQFAQGDES 362
Query: 641 TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
TRK+GGTGLGL+I R L MGG + V ++ PG
Sbjct: 363 MTRKYGGTGLGLAIARQLTELMGGVLDV--ESEPG 395
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 85/182 (46%), Gaps = 31/182 (17%)
Query: 910 RREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKIL 969
R+E L + + RR+ C + ++ +LL ED P+ Q V +L
Sbjct: 530 RQEGLYRALITALGMDDAERREAGCCADRPPRPRQ-------VLLVEDNPVNQEVGKGML 582
Query: 970 EKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029
E +G V VV DGL AV + + R+DL+ MDCQMP M
Sbjct: 583 ESLGCRVKVVEDGLAAVNEVRQ-----------------------NRYDLVFMDCQMPVM 619
Query: 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
DG EAT IR E G R +P++ALTA+AM D CL G + YL+KP +++ +
Sbjct: 620 DGLEATRRIRAREEGTGNR-VPVIALTAYAMKGDRLACLEAGADEYLSKPFTRDQIAKIM 678
Query: 1090 LR 1091
R
Sbjct: 679 QR 680
>gi|410862181|ref|YP_006977415.1| diguanylate cyclase [Alteromonas macleodii AltDE1]
gi|410819443|gb|AFV86060.1| GGDEF domain protein [Alteromonas macleodii AltDE1]
Length = 1351
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 60/374 (16%)
Query: 380 CILVIGCICILI--------------------LTNGVS-KEMKLRAELISHLDARRKAEA 418
C L+IG I +++ L VS K L A+ + +A KAE
Sbjct: 764 CALLIGVIILVVYLRTRLHQTEITKQKRFVHALEQQVSEKTASLEAQAHNLKNALEKAEE 823
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
+ KS+FLANMSHE+RTPM +IG+L++LK D LT EQ V S+ +LL L+N
Sbjct: 824 ATKLKSEFLANMSHEIRTPMNGVIGMLDLLKKSD-LTVEQRQRVNIASSSASSLLVLIND 882
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+ K+E+E+ +FDL+ +E L + + ++D+S V DP
Sbjct: 883 ILDFSKIEANKLEIESVDFDLRSLIETLAQSIAHTAQLKGLAVIVDVSKVDASKVNSDPT 942
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI +NL++N++KFT G + I L SKN ++
Sbjct: 943 RIQQILTNLLSNAVKFTEQGELSI---TAALLPSKNEGQY-------------------- 979
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+ C V DTG GI+ K +FE+F Q D STTR++GGTGLGLSI + L
Sbjct: 980 ----------VVRC-AVKDTGIGIEPRKLAQLFEAFTQVDASTTRRYGGTGLGLSITKKL 1028
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF-PNTVVVLATVGSMERMIIS 717
+GG++K + G+ ++ + +++K + +D P+T ++ R ++
Sbjct: 1029 CELLGGDVKASSEVGKGSCFEVIFEVNKVNDAKSVAPSDVAPHTHCLIVDSNVSNREVLK 1088
Query: 718 QWLRKKKVSTLETS 731
R+ V +ETS
Sbjct: 1089 ---RQLNVWGVETS 1099
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 922 RHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H+ R P ++ ++ EGLR+LL ED + Q+VA ILE G TV V +
Sbjct: 1198 EHKADDFGRSAPVEEASHNATPHNSPEGLRVLLVEDNAINQLVATTILEGEGLTVDVANN 1257
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G +A+ + LQ P + L++MDCQMP+MDG+E T IR
Sbjct: 1258 GKEAL---------------AFLQQPQQAKP----YSLVVMDCQMPEMDGFETTKHIRSG 1298
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ ++IPIVA+TA+AM +D+ KCL GMN +LTKPID E+++ T+ +
Sbjct: 1299 AAGAHYQSIPIVAITANAMQSDKDKCLQSGMNDFLTKPIDQEKVILTLQK 1348
>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
MA-4680]
Length = 1829
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 24/280 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1357 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLTPKQVEFAETIHGAGSDLLQLI 1416
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1417 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1476
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR A+ P ++
Sbjct: 1477 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGADVPV-----------AIR 1516
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1517 EQLLEAGSLRDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1576
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
R + +GGEI + G+ LYL L S Q Y
Sbjct: 1577 SREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELPPQGY 1616
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1755 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTK 1811
Query: 1079 PIDSERMVSTI 1089
P+D + +++ +
Sbjct: 1812 PVDPDHLLTVM 1822
>gi|374300887|ref|YP_005052526.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 1087
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 154/304 (50%), Gaps = 38/304 (12%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI- 447
+ +L G+ +K R H AR +AEA+N K++FLANMSHELRTP+ ++G++E+
Sbjct: 681 VTLLLEGMLAHLKRRRAEEGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMIELA 740
Query: 448 -LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+ D T++ K S LL ++N +LDL+K+E+GK+ELE F+L++ L+
Sbjct: 741 GMSCADPKTHDFLRMA---KDSGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNT 797
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
+ + L + ++P ++ GD GR Q+ +NL+ N++KFT G +
Sbjct: 798 FYPVCMVAERKGLRCSLVVDQSVPEHLVGDLGRFRQVVTNLVGNAVKFTEKGEV------ 851
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
NL + F TD + + F V DTG GI Q
Sbjct: 852 -NLSVMRIPHPFATD--------------------------SVQIRFRVKDTGIGIPQDM 884
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
+F+ F Q S + K+GGTGLGL+I R LVN MGG+I VV + G+ G
Sbjct: 885 HNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFTATFGL 944
Query: 687 SSES 690
+S+S
Sbjct: 945 TSDS 948
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 23/153 (15%)
Query: 954 LAEDTPLIQIV--ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
L D+PL+ + C E V V+ D +NR++A E LQG +ET
Sbjct: 944 LTSDSPLVDAIEKTCGTAESKRLRVLVIEDN-----PINRIVAKELL----TLQGCGAET 994
Query: 1012 PDT----------PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
DT +D +L+D ++P M+G E IR+ E+ G + +VALTA+A+
Sbjct: 995 ADTGHEGLEKLRQSEYDCVLLDIRLPDMEGTEVLQRIRRGEA--GNPKVCVVALTAYALE 1052
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094
D + L GM+ YL KPI SE ++ + R+ K
Sbjct: 1053 GDRNRFLQAGMDDYLAKPISSEDLLRVLKRIQK 1085
>gi|376004104|ref|ZP_09781863.1| putative two-component hybrid sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
gi|375327512|emb|CCE17616.1| putative two-component hybrid sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
Length = 1338
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 151/269 (56%), Gaps = 42/269 (15%)
Query: 403 RAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL + L A+ A+ +N KS+FLANMSHELRTP+ AI+G ++L + LT++Q
Sbjct: 851 QAELFTQLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNSGLTSQQQDY 910
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I++S LL L+N +LDLSK+E+G + L T F+L+ LE + M ++ S+ N+
Sbjct: 911 LQIIQQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVL 970
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ L +IP V+ D ++ Q+ NL++N+IKFT +G++ +RG
Sbjct: 971 DIQLDQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTLRG----------------- 1013
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+F + + Q L FEV+DTG GI + E +F+ F Q D
Sbjct: 1014 ------SFVSSVSQ---------------LYFEVEDTGPGITPDEQERLFQPFVQTD--V 1050
Query: 642 TRKH-GGTGLGLSIVRTLVNKMGGEIKVV 669
R+H GTGLGL+I + VN MGG+I +V
Sbjct: 1051 GRRHQQGTGLGLAISQQYVNLMGGKITIV 1079
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LILMD +MP MDGY+AT +IR ++ G I I+A+TAHA ++ L G N + K
Sbjct: 1175 LILMDMRMPVMDGYQATQQIR--QTPQGQSTI-IIAITAHAFESERSSILATGCNDLIHK 1231
Query: 1079 PIDSERMVSTI 1089
P + + ++ I
Sbjct: 1232 PFNIKTLLDCI 1242
>gi|359462399|ref|ZP_09250962.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 929
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 184/363 (50%), Gaps = 32/363 (8%)
Query: 366 RAYKTLIILISASVCILVIGCICILILTNGVSKEMKLR-----------AELISHLD-AR 413
RAY + +LI L++ C + + + + R AEL+ L ++
Sbjct: 352 RAYMLVPVLIGGQFWGLLVTCQQTPHQWDDIEQSLLRRVGDQLGVALQHAELMYQLQKSK 411
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
KAEA+N KS FLANMSHELRTP+ AI+G ++L D LT +Q T+ I +S LL
Sbjct: 412 EKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDKNLTPKQKQTLTSINRSGSHLL 471
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
L+N +L++SK+E+G++ L DL L+ + +MF ++ + ++ ++D + ++P +
Sbjct: 472 NLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLMVDKAPDLPPYI 531
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
R D R+ Q+ N++ N++KFT G + ++ + + L + PT
Sbjct: 532 RTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPLISPDLV---PTHDD---------- 578
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
NA+ + LC +V+DTG GI S+ +FE+F Q G GLGL+
Sbjct: 579 ----GNAVAEENQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRNSTEGA-GLGLA 633
Query: 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMER 713
I + + MGG I + K GT +Q+ + + A +++K + D P V LA R
Sbjct: 634 ICQHCIELMGGNILIDSKEGQGTTVQIKVPVMA-TQTKSVDHLDVP-MVQTLAPGHPHIR 691
Query: 714 MII 716
M++
Sbjct: 692 MLV 694
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 43/150 (28%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L+ ED P + ++ VG V V +G QAV
Sbjct: 690 IRMLVVEDNPENAQIVIDLMTSVGFEVQSVVNGQQAVACWQ------------------- 730
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG--------------------ARN 1049
T + +ILMD QMP M+GYEAT IR ES+ G N
Sbjct: 731 ----TWQPHVILMDWQMPVMNGYEATQTIRTLESQAGYTIHLQASQDSSSSPSVLFPLNN 786
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKP 1079
I+ALTA +++C G + +L KP
Sbjct: 787 TIIIALTASVFEDTKQECFEAGCDDFLRKP 816
>gi|428312449|ref|YP_007123426.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428254061|gb|AFZ20020.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 655
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 138/261 (52%), Gaps = 30/261 (11%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
N KS F+ANMSHELR+P+ I+G +++ L EQ + I +S LL L+N++
Sbjct: 186 NVAKSTFIANMSHELRSPLNVILGFTQLMTKSSTLAPEQRENLSIIARSGEHLLTLINQV 245
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGR 539
LDLSK+E+G+ L T FDL + L++L DMF ++ +++ V + + +IP+ VR D +
Sbjct: 246 LDLSKIEAGRTTLNETNFDLHRLLDDLEDMFQLKADERHLQLVFERNSDIPQYVRTDEVK 305
Query: 540 VFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANN 599
+ QI NL+NN+IKFT G + +R +K+Q +N
Sbjct: 306 LRQILINLLNNAIKFTQEGGVCLR-----------------------------VKRQTSN 336
Query: 600 AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659
++ L FE++DTG GI Q E +FE+F Q + + GTGLGL I R V
Sbjct: 337 DETEENISQFKLNFEIEDTGYGICQDDLEAIFEAFVQSQ-TGKQAQEGTGLGLPIARKFV 395
Query: 660 NKMGGEIKVVKKNSPGTLMQL 680
M GEI V + GT+
Sbjct: 396 QLMDGEITVSSEVGHGTIFNF 416
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
E DT LI MD +MP +DGYEAT +I+ + I+ALTA + D L
Sbjct: 484 EVWDTWEPHLIWMDMRMPILDGYEATKQIKGISK---GQATAIIALTASTLEEDRAIVLS 540
Query: 1070 VGMNAYLTKPI 1080
G + ++ KP
Sbjct: 541 AGCDGFVRKPF 551
>gi|408672306|ref|YP_006872054.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
gi|387853930|gb|AFK02027.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
17448]
Length = 1101
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 39/288 (13%)
Query: 389 ILILTNGVSKEM-KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI 447
I I GV++++ +L+ L A+ +AE S K +FLANMSHE+RTPM +IG++++
Sbjct: 552 IPIEVEGVARDISELKKTTAELLVAKDEAERSLKVKERFLANMSHEIRTPMNGVIGMIDL 611
Query: 448 LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELV 507
+ + L EQ V IKKSS LL +LN ILDLSK+E+GKM+L N D+++ LE LV
Sbjct: 612 M-YETPLNPEQKDYVQTIKKSSETLLTILNDILDLSKIEAGKMDLHNAPLDIKEILERLV 670
Query: 508 DMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCE 567
+F + N + ++D++P + D R+ QIFSNL +N++KFT +G + I
Sbjct: 671 ALFRQRAIEKNNKISYHIADDVPAYLIADQTRLLQIFSNLTSNALKFTENGSVTI----- 725
Query: 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW 627
+ K AN +N L E+ DTG GI +
Sbjct: 726 -----------------------SLSKVSANGKINI-------LRGEITDTGIGISEDDQ 755
Query: 628 ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ +F +F+Q D ST + GGTGLGL+I R L M G++ V+ ++PG
Sbjct: 756 KLLFGAFQQVDNSTKKSFGGTGLGLAISRELCRLMKGDMGVI--STPG 801
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILL +D + + VA +IL K G V G +A+E
Sbjct: 841 KILLVDDNQVNRKVASEILIKAGCEVLTADSGAKAIEVFG-------------------- 880
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+ FD+I MD QMP+MDG E T +R+ +G IVA+TA++M D ++ L
Sbjct: 881 --EGHGFDVIFMDIQMPEMDGIETTKRLRQL---YGNALPKIVAMTAYSMQHDRERFLSE 935
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM+ Y+ KPI + ++ + + N +++ T
Sbjct: 936 GMDDYVPKPIRASILIQKVNEIVPNAQAKSPQT 968
>gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1366
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 151/269 (56%), Gaps = 42/269 (15%)
Query: 403 RAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL + L A+ A+ +N KS+FLANMSHELRTP+ AI+G ++L + LT++Q
Sbjct: 879 QAELFTQLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLLGQNSGLTSQQQDY 938
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ I++S LL L+N +LDLSK+E+G + L T F+L+ LE + M ++ S+ N+
Sbjct: 939 LQIIQQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVL 998
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ L +IP V+ D ++ Q+ NL++N+IKFT +G++ +RG
Sbjct: 999 DIQLDQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTLRG----------------- 1041
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+F + + Q L FEV+DTG GI + E +F+ F Q D
Sbjct: 1042 ------SFVSSVSQ---------------LYFEVEDTGPGITPDEQERLFQPFVQTD--V 1078
Query: 642 TRKH-GGTGLGLSIVRTLVNKMGGEIKVV 669
R+H GTGLGL+I + VN MGG+I +V
Sbjct: 1079 GRRHQQGTGLGLAISQQYVNLMGGKITIV 1107
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LILMD +MP MDGY+AT +IR ++ G I I+A+TAHA ++ L G N + K
Sbjct: 1203 LILMDMRMPVMDGYQATQQIR--QTPQGQSTI-IIAITAHAFESERSSILATGCNDLIHK 1259
Query: 1079 PIDSERMVSTI 1089
P + + ++ I
Sbjct: 1260 PFNIKTLLDCI 1270
>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
Length = 723
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 144/279 (51%), Gaps = 35/279 (12%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A AE++N KS FLANMSHE+RTPM ++G+ ++L+ D LT +Q V IK S
Sbjct: 204 EAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMADVLRDTD-LTEDQRLYVDTIKNSGE 262
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N +LD SK+E+ K++L FDL++ ++E++ + +E LD +P
Sbjct: 263 ALLVIINDVLDYSKIEAKKLDLHPEPFDLERAIQEVIMLLQPLAREKGLEMALDYDLFMP 322
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDPGR+ Q+ +NL+ N++KFTS GH+++R P
Sbjct: 323 TTLVGDPGRIRQVLTNLLGNAVKFTSDGHVLVR-----------VTGVPD---------- 361
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+E K+ + ++DTG GI + +F F Q + RK GTGL
Sbjct: 362 -------------KETGKVQVNIAIEDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGL 408
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
GL+I + L+ M G+I V + G+ L L A E
Sbjct: 409 GLAISQRLIQMMEGDIWVTSEEQAGSCFGFKLPLEAHGE 447
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 32/164 (19%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L +RIL AED Q+V K+++ + + + +G +AV+
Sbjct: 584 LRKMRILAAEDNKTNQLVFSKMIQHLDIDLMIANNGQEAVDMYQ---------------- 627
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+ R D+I MD MPKMDG EA++ IRK E G R PIVALTAHAM+ D+K
Sbjct: 628 -------SYRPDMIFMDISMPKMDGKEASMAIRKIEGTTGIR-CPIVALTAHAMSGDDKN 679
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR--------LTKNMPSEATG 1102
L G++ YLTKP+ + ++S I + L + P ATG
Sbjct: 680 ILAAGLDHYLTKPLRKQDIISQIAQNQPHGTRPLEADAPHHATG 723
>gi|357634004|ref|ZP_09131882.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357582558|gb|EHJ47891.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 858
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 181/348 (52%), Gaps = 35/348 (10%)
Query: 391 ILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGL--LEIL 448
+L + + +++ EL++ ARR+AEA++ K+QFLAN+SHELRTP+ I+G+ L IL
Sbjct: 444 VLFDMGAARLRVETELVA---ARRQAEAASEAKTQFLANVSHELRTPINGILGMAQLAIL 500
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
+ E + TV + ++ L+ +++ +L+L+ VESG + EF L++ LE L
Sbjct: 501 EGAVGRDAEYWQTV---RDATDRLVAIVDNLLELASVESGSLSPLLREFSLRRLLESLRG 557
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
FSV+ + LD++ +P + GDP R+ QI NL++N+I+FT SG + ++
Sbjct: 558 AFSVRAGLAGLTLGLDITPGLPDRLLGDPFRLRQILGNLLDNAIRFTPSGGVSMQ----- 612
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
P D + G Q+ A +F N ++L F V DTG GI + K
Sbjct: 613 --------IRPFDPRTAGG------PQRVFVAGDF---NGISLVFTVTDTGIGIPKDKQA 655
Query: 629 TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
+FESF G+ T++ GGTG+GLSI R L +GG I V + G+ L + + S
Sbjct: 656 AIFESFTLGEDHLTKRFGGTGMGLSIARRLAELLGGSIWVESRPGFGSTFHLTVPMWPVS 715
Query: 689 ES-----KQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 731
+ AD P ++ ++ R+ +++ LRK LE
Sbjct: 716 DEAGPALASALPADLPPLRFLVVEDEAVNRLALARSLRKLGHEVLEAG 763
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 23/150 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L LR L+ ED + ++ + L K+G V +G +A+ R L+ E
Sbjct: 730 LPPLRFLVVEDEAVNRLALARSLRKLGHEVLEAGNGEEAL----RQLSME---------- 775
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
R D+++MD QMP MDG A IR E R +P+VALTA+A+ D K+
Sbjct: 776 ---------RVDVVIMDVQMPVMDGLAAVAHIRNGEVPGTNRRLPVVALTAYALEGDRKR 826
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
L GM+ ++TKP D ++++ + ++ +
Sbjct: 827 FLAAGMDEFVTKPCDMDQLLRAVAKVVGKV 856
>gi|428208244|ref|YP_007092597.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
gi|428010165|gb|AFY88728.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
Length = 822
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 38/349 (10%)
Query: 339 FFLNLKRLPIVGVIIIPRE----YIMGKADERAYKTLIILISASVCILVIGCICILILTN 394
+ N +LP++GV E ++ E A+ L V + + C+ I
Sbjct: 260 LYRNYAKLPVIGVYRWLNEQDLALLVEMQQEEAFAPARQLAGTIVLVGLASVGCLSIGVY 319
Query: 395 GVSKEMKLRAELISHLDAR-----RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
+++++K+ E + + R ++AEA+N KS+FLANMSHELRTP+ AI+G +++
Sbjct: 320 WLTRQLKISREQLENYSHRLEQKAQEAEAANLAKSEFLANMSHELRTPLNAILGFTQLMS 379
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
D L+ Q + I +S LL L+N +L ++K+E+G+ L FDL + L+ L +M
Sbjct: 380 RDRSLSAAQLENLDTINRSGEHLLTLINDVLSMAKIEAGRTILNENSFDLYELLDSLEEM 439
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
++ ++ + + + +P+ VR D ++ Q+ NL+ N+IKFT +G I+R
Sbjct: 440 LRLKAEAKGLQLIFERTPEVPQCVRADESKLRQVLINLLGNAIKFTQAGGAILR------ 493
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
RTK Q ++ L FEV+DTG GI S+ E
Sbjct: 494 -------------------VRTK---QDKQEVSQSPPTTCTLHFEVEDTGPGIAASELER 531
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
+F+ F Q + + + H GTGLGL+I + V MGGEI V GT+
Sbjct: 532 LFKPFVQTE-AGRKSHEGTGLGLTISQQFVRLMGGEIAVSTTLGHGTIF 579
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 26/133 (19%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ ED + + K+LE VG V +G + V S
Sbjct: 613 RILVVEDKWENRQLLVKMLESVGFEVREAENGEEGVAIWE------------------SW 654
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P LI MD +MP MDGYEAT +I+ H I+ALTA A + + L
Sbjct: 655 QPQ-----LIWMDMRMPVMDGYEATRQIKAHLKGHAT---IIIALTASAFDEERAVVLSA 706
Query: 1071 GMNAYLTKPIDSE 1083
G N ++ KP+ E
Sbjct: 707 GCNDFVRKPLREE 719
>gi|374299148|ref|YP_005050787.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1232
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 160/296 (54%), Gaps = 38/296 (12%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
+L+SA V + + G CIL + +++ +++ E+ A+ +AE +N KS FLANMSH
Sbjct: 801 LLLSADV-VRIGGKPCILTVGADITERIRMEGEMRR---AKEQAEIANRAKSDFLANMSH 856
Query: 433 ELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492
E+RTPM ++G+++ L +L KKS+ LL ++ ILDLSK+E+G+MEL
Sbjct: 857 EIRTPMNGVMGMID-LSLMQKLPTRVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMEL 915
Query: 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552
FD++ +E V ++ ++ ++ + + +IP + GDP R+ Q+ +NL++N++
Sbjct: 916 TEDIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLLCGDPVRLRQVLANLVSNAV 975
Query: 553 KFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612
KFT G +++ + + + P D ++ L
Sbjct: 976 KFTHKGRVLV-------NVERTGHDLPRD--------------------------EVRLL 1002
Query: 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
F V DTG GI + K +FESF Q + +T ++GGTGLGL+I + LV MGG I V
Sbjct: 1003 FSVSDTGIGIPREKLSLIFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIGV 1058
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 23/140 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + +I+A ++L ++G V+ V +G A+EAL R
Sbjct: 1098 LRILLAEDNEINRILAIELLHELGHEVTAVENGRLALEALGR------------------ 1139
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
RFDL+LMD QMP+M G EA IR+ +P+VALTA+A+ D ++ L
Sbjct: 1140 -----ERFDLVLMDVQMPEMGGLEAVRRIREEPPAGVDPRLPVVALTAYALEGDRERFLA 1194
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ YL+KPI + + T+
Sbjct: 1195 AGMDGYLSKPIRARELELTL 1214
>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
Length = 1214
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 145/266 (54%), Gaps = 28/266 (10%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S+ YKS+FLANMSHELRTP+ +++ L ++L ++ LT Q I ++ ALL+L+
Sbjct: 766 SSRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNLTPRQVEFAKTIHEAGTALLQLI 825
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+G+M++ + L + +E + F+ + + + L + P+ + D
Sbjct: 826 NDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDKELAFTVRLDPSAPQEIYTD 885
Query: 537 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ 596
R+ Q+ NL++N+IKFT G + R + GRA Q
Sbjct: 886 EQRLQQVLRNLLSNAIKFTHEGEV---------------------RLEVGRA--PADVQY 922
Query: 597 ANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656
A+ A+ D L F V DTG GI +K + +FE+F Q D +T+RK+GGTGLGLSI R
Sbjct: 923 ADEALKNTPD---MLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLSICR 979
Query: 657 TLVNKMGGEIKVVKKNSPGTLMQLYL 682
+ +GGEI V G+ LYL
Sbjct: 980 QIARLLGGEIHVASTPGEGSTFTLYL 1005
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 931 DQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALN 990
D P S + L G +IL+ +D +LE+ GATV +G + +E L
Sbjct: 1054 DSPRPSDADRWQGEDPLNGAKILIIDDDIRNVFALTSVLERHGATVVYAENGREGIEQLE 1113
Query: 991 RMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050
R L+LMD MP+MDG+ T IRK ++
Sbjct: 1114 R----------------------NEDVALVLMDIMMPEMDGWATTSAIRKMPQ---FADL 1148
Query: 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
PI+ALTA M+ D +K + G + Y+ KP+D
Sbjct: 1149 PIIALTAKVMHGDREKSIASGASDYVPKPVD 1179
>gi|428297287|ref|YP_007135593.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
gi|428233831|gb|AFY99620.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
Length = 759
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 146/280 (52%), Gaps = 37/280 (13%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E K++ A+ A+A+N KS F+ANMSHELR+P+ AI+G +I+ L E
Sbjct: 277 EQKVKERTAELEQAKLIADAANQAKSTFIANMSHELRSPLNAILGFAQIMTRSQALGKEN 336
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
V I +S LL L+N +LDLSK+E+GK L FDL + L+++ DMF ++ N
Sbjct: 337 QENVGIIYRSGEHLLTLINNVLDLSKIEAGKTTLNPKNFDLHRLLDDIHDMFQIKAEEKN 396
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
++ +++ ++P+ +R D ++ Q+ NLINN +KFT SG + IR
Sbjct: 397 LQLIMEYEPDVPQYIRTDEVKLRQVLINLINNGLKFTQSGGVSIR--------------- 441
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ Q N N D + FEV+D+G GI + +FE+F Q
Sbjct: 442 --------------VGHQKNTLANEDAD---TINFEVEDSGAGIAPEELGELFEAFSQ-- 482
Query: 639 PSTTRKHG--GTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
+TT K GTGLGL I R V+ MGG+I+V + GT
Sbjct: 483 -TTTGKQAQEGTGLGLPISRQFVSLMGGDIQVKSQVEKGT 521
Score = 45.4 bits (106), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 26/139 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ +D PL + + K+L +G + +G +A+
Sbjct: 557 RLLIVDDKPLNRQLLIKLLSPLGFQLQEASNGQEAINIW--------------------- 595
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+T LI MD +M MDGYEAT I+ + + ++A+TA + ++ L
Sbjct: 596 --ETWEPHLIWMDMRMTVMDGYEATQRIKNTTK---GQATAVIAVTASVLEEEKAVVLSA 650
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
G + +L KP E + +
Sbjct: 651 GCDDFLRKPFREEEIFQVM 669
>gi|315125665|ref|YP_004067668.1| histidine kinase response regulator hybrid protein
[Pseudoalteromonas sp. SM9913]
gi|315014179|gb|ADT67517.1| histidine kinase response regulator hybrid protein
[Pseudoalteromonas sp. SM9913]
Length = 726
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 166/313 (53%), Gaps = 40/313 (12%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+ A+ +NN KS+FLANM+HELRTP+ I+ L E S+ T E+ ST+ I KS++ L
Sbjct: 185 KEAADIANNTKSKFLANMTHELRTPLHGILNLAEFAISE-TTTEEKNSTLKSILKSAHYL 243
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
++N ILD SK+E+GK+E+E+ F L + + +++ Q S ++ + + I N
Sbjct: 244 SNIVNDILDFSKIEAGKLEIEHINFSLNEVISDVIKPLLQQASAKGIKLITSIDPKIADN 303
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
++GDP R+ QI +NL +N+IKFT+ G + ++ +N +
Sbjct: 304 LKGDPLRISQILNNLCSNAIKFTNFGQVELKISVKN----------------------ST 341
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L+ Q L FEV DTG G++++ E +F+ F Q D ST+RK+GGTGLGL
Sbjct: 342 LQTQV-------------LTFEVIDTGLGVNETVQEHLFKEFHQADSSTSRKYGGTGLGL 388
Query: 653 SIVRTLVNKMGGEIKV---VKKNSPGTLMQLYLLLGASSESKQIYD-ADFPNTVVVLATV 708
SI L M G + + K S T Q + + SKQ D + + V++A
Sbjct: 389 SICARLSELMQGHLSFTSKIVKGSTFTYEQSFEIALLPPTSKQCTDITNLQGSTVLIAED 448
Query: 709 GSMERMIISQWLR 721
+ ++II + L+
Sbjct: 449 NKINQLIIVKMLK 461
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 26/143 (18%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L+G +L+AED + Q++ K+L+ A + + DG + V+ + S+
Sbjct: 438 LQGSTVLIAEDNKINQLIIVKMLKAHNANLIIAEDGKECVKYF---------KEHSV--- 485
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
DLI MD QMP+MDG +AT IR + + +PI+A+TA+ + D +
Sbjct: 486 -----------DLIFMDIQMPEMDGIKATQAIRALPT---GKTVPIIAMTANTLKQDIEH 531
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
L +GM+ YLTKP D ++ S +
Sbjct: 532 YLDIGMDGYLTKPFDKAKINSLL 554
>gi|428310547|ref|YP_007121524.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252159|gb|AFZ18118.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1113
Score = 160 bits (404), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 145/258 (56%), Gaps = 29/258 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE +N KS FLA+MSHELRTP+ ++G +++ D LT+EQ ++ I +S +
Sbjct: 625 AKEAAEVANRAKSLFLASMSHELRTPLNIMLGFTQVMNRDSSLTSEQRESLQIINRSGHH 684
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +LDLSK+E+G++ L+ + FDL L L +MF+ + + ++ L+++ ++P+
Sbjct: 685 LLALINDVLDLSKIEAGRLTLDESSFDLISLLRSLREMFNQKAESKGLQLHLEIASDVPQ 744
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V DP ++ Q+ NL+ N+IKFT G + ++ +KN E RK
Sbjct: 745 YVSADPNKLRQVLINLLGNAIKFTQKGSVSLKV------KTKNEKEKTEPRKNL------ 792
Query: 592 KLKQQANNAMNFREDNKLA-LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+KLA L FEV DTG GID ++ ++F++F Q GTGL
Sbjct: 793 ---------------DKLACLTFEVSDTGVGIDPNEINSIFDAFVQTQSGKVAPE-GTGL 836
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I R V MGG+I V
Sbjct: 837 GLAISRKFVRLMGGDITV 854
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP+MDGYEAT IR S G I I+ALTAH + D L G N +++K
Sbjct: 943 LIWMDIRMPQMDGYEATQRIRS--SVEGQATI-IIALTAHVSSRDRTLALSAGCNDFISK 999
Query: 1079 PIDSERMVSTI 1089
P E + + +
Sbjct: 1000 PFQEETLFAKM 1010
>gi|372282181|ref|ZP_09518217.1| sensor histidine kinase/response regulator, partial [Oceanicola sp.
S124]
Length = 422
Score = 160 bits (404), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 145/275 (52%), Gaps = 42/275 (15%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L +T+ V E +LR +AR+KAEA+N KS FLANMSHE+RTPM ++G+ ++L
Sbjct: 190 LNITSAVRYERRLR-------EARQKAEAANRAKSTFLANMSHEIRTPMNGVVGMADLL- 241
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+D LT EQ I+ S ALL ++N +LD SK+E+ +++L FDL++ + E+V +
Sbjct: 242 NDTVLTEEQRLYAETIRSSGEALLVIINDVLDYSKIEAERLQLHPVPFDLERCIHEVVLL 301
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+ ++D P GDPGR+ Q+ +NL+ N++KFT+ GH++IR
Sbjct: 302 LRPTAKEKGLALLIDYDLFTPTGFIGDPGRIRQVLTNLVGNAVKFTAHGHVLIR------ 355
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
P + + +++ V+DTG GI K +
Sbjct: 356 -----VVGLPRS-----------------------DSDSVSVTVTVEDTGIGIAPDKAQI 387
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGG 664
+F F Q D ++R+ GTGLGL+I L+ MGG
Sbjct: 388 IFGEFNQADTDSSRQFEGTGLGLAISERLIKLMGG 422
>gi|351730132|ref|ZP_08947823.1| multi-sensor hybrid histidine kinase [Acidovorax radicis N35]
Length = 993
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 152/292 (52%), Gaps = 37/292 (12%)
Query: 392 LTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
L N +E + AEL AR +A A+ KS FLA MSHE+RTPM +IG++++L +
Sbjct: 295 LANANVRERQRSAEL---EQARNEANAAAQAKSNFLAAMSHEIRTPMNGVIGMIDVL-AR 350
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
L + Q + V I++S+++LL ++ ILD SK+E+G +++E+ + + +E++ M +
Sbjct: 351 SSLKSPQVAMVDLIRESAFSLLSIIEDILDFSKIEAGHLDVESEPMAVGEVVEKVCAMLN 410
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
VE L IP +V GD R+ QI NL+NN+IKF++ G
Sbjct: 411 RLAEKQGVELTLFTDPEIPHSVLGDALRLRQILINLVNNAIKFSAGG------------- 457
Query: 572 SKNTAEFPTDRKKFGR-AFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
+ GR A R L QQ + + L F+V D G G+ ++ T+
Sbjct: 458 -----------RTAGRVAVRAVLVQQ--------QPQSVTLEFQVIDNGIGMGEATLATL 498
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
F +F Q D STTR+ GGTGLGL I L +MGG I VV G+ L L
Sbjct: 499 FTAFTQADVSTTRRFGGTGLGLVISGNLAQRMGGSISVVSAPGAGSTFTLRL 550
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 37/157 (23%)
Query: 933 PCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992
P + S + ++R L IL+ ED + Q V + L +G T + DGLQA+
Sbjct: 710 PIALSREEARRQRRL----ILVVEDNDINQKVIMQQLSLLGLTADLTGDGLQAL------ 759
Query: 993 LAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG------ 1046
R RS + LI+ D MP MDGY+ IR E E
Sbjct: 760 -----IRWRS------------GDYALIVTDLHMPGMDGYQLASVIRAEEQERANALVRA 802
Query: 1047 --ARNIP--IVALTAHAMNADEKKCLGVGMNAYLTKP 1079
A P I+ALTA+A+ + ++C GM+ Y++KP
Sbjct: 803 GKAVEPPVRILALTANALKTEAQRCKDAGMDDYMSKP 839
>gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3]
gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3]
Length = 1064
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 33/279 (11%)
Query: 426 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKV 485
FLA MSHE+RTPM IIG++++L + L +Q S I+ SS++LL ++N ILD SK+
Sbjct: 422 FLATMSHEIRTPMNGIIGMIDLLLTS-SLNRDQRSMTNTIRDSSFSLLNIINDILDFSKI 480
Query: 486 ESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFS 545
E+GK+ELE+ F + + LE ++D + V L NIP +++GDP R+ Q+
Sbjct: 481 EAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDPVRIRQVLF 540
Query: 546 NLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRE 605
NL+ N++KF++ + G T K++ +N + F
Sbjct: 541 NLVGNAVKFSAV------------------------QDSRGEVRITLKKKELSNQLVF-- 574
Query: 606 DNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGE 665
L E+ D G GI+ + E +F+ F Q + STTR+ GGTGLGL+I + LVN MGG+
Sbjct: 575 -----LTIEIQDNGIGIEAKQLERLFQPFTQAESSTTRQFGGTGLGLAICQNLVNLMGGK 629
Query: 666 IKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVV 704
I V G++ ++ L E D+P +V+
Sbjct: 630 IDVSSTVGKGSIFKVNLSF-PYIERPSPLTHDYPKVIVI 667
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 24/133 (18%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G IL+AED Q V + L K+G + V DG+ A
Sbjct: 808 GRLILVAEDNQTNQEVIKRQLSKLGYSCIVADDGVHA----------------------- 844
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
E T +F ++L DC MP+ DGYE T +R + + G + +PI+A+TA+A+ + +KC+
Sbjct: 845 EELYPTYKFAMVLTDCHMPRRDGYELTRVLRSMQKKSGIK-VPIIAITANALVGESEKCI 903
Query: 1069 GVGMNAYLTKPID 1081
GM+ YL+KP++
Sbjct: 904 AAGMDDYLSKPVE 916
>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
Length = 1828
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 24/286 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D+ L+ +Q I + LL+L+
Sbjct: 1347 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFAETIHGAGSDLLQLI 1406
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1407 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1466
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT +G ++IR A+ PT ++
Sbjct: 1467 EQRLLQVLRNLLSNAVKFTDNGAVELVIR---------PAGADVPT-----------AIR 1506
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1507 EQLLEAGSLRDADADLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSI 1566
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
R + +GGEI + G+ LYL L S Q Y P
Sbjct: 1567 SREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELPPQGYAPPTPG 1612
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G R+L+ +D +LE+ G V +G + +E L +
Sbjct: 1706 GERVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQ----------------- 1748
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K +
Sbjct: 1749 -----NDDVAVVLMDIMMPEMDGYATTSAIRRMPQFAG---LPIIALTAKAMKGDREKAI 1800
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
G + Y+TKP++ + +++ +
Sbjct: 1801 DSGASDYVTKPVEPDYLLTVM 1821
>gi|254413786|ref|ZP_05027555.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179383|gb|EDX74378.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1038
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 145/258 (56%), Gaps = 28/258 (10%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
DAR+ AE +N KS+FLA MSHE+RTPM +IG+ +L D +LT +Q I+ S
Sbjct: 364 DARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGLLL-DTELTPDQRHFAETIRNSGD 422
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
ALL ++N ILD SK+ESGK++LE F+L+ +E+ +D+ + + + +E +IP
Sbjct: 423 ALLTIINDILDFSKIESGKLDLEEQPFELRDCVEDALDLLAAKAAAKKLELGYRFDSHIP 482
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
VRGD RV QI NL++N++KFT +G I++ L+
Sbjct: 483 DQVRGDVTRVRQILVNLLSNAVKFTEAGEIVVSVTGRKLE-------------------- 522
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
N A + + N+ + F V+DTG GI + +F+ F Q D ST+R++GGTGL
Sbjct: 523 -------NEADSHPDSNRYHIQFAVNDTGIGIAPQRMHRLFKPFSQVDSSTSRQYGGTGL 575
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + L MGG + V
Sbjct: 576 GLAICKQLSAMMGGTMWV 593
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 28/151 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+AED + Q++A ++L+++G VV DGL+A+EAL+R
Sbjct: 793 RILVAEDNLVNQLLAVRLLQRMGYRADVVSDGLEALEALHRQ------------------ 834
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+D++ MD QMP MDG EAT I ++ + A I+A+TA+AM +D ++CL
Sbjct: 835 -----PYDMVFMDVQMPHMDGLEATQRI--CQTWNAATRPRIIAMTANAMESDRQECLKA 887
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEAT 1101
GM+ Y++KPI E +V L +++P++ T
Sbjct: 888 GMDDYISKPIRVEELVRV---LNQSVPNQET 915
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 1015 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA 1074
P FDL ++D QMP++DG +R+ + +P++ LT+ + E V A
Sbjct: 690 PSFDLAILDMQMPQVDGLSLAATLRQRPD---CQQLPLIMLTSIGIPEKELNAAQVDFAA 746
Query: 1075 YLTKPIDSERMVSTILRLTKNMPSE 1099
+L KPI ++ S +++ MP++
Sbjct: 747 FLNKPIKQSQLYSVLVQTVGGMPTK 771
>gi|427722297|ref|YP_007069574.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
gi|427354017|gb|AFY36740.1| multi-sensor hybrid histidine kinase [Leptolyngbya sp. PCC 7376]
Length = 1268
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 141/257 (54%), Gaps = 33/257 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE +N KS+FLA MSHE+RTPM A+IG+ +L D L N+Q V I+ S
Sbjct: 709 AKEEAEKANRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DTPLRNQQKEFVEIIRSSGNN 767
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESGK+ELEN F +++ +EE +D+ + + + ++ L ++
Sbjct: 768 LLTIINDILDFSKIESGKLELENQPFQVRQCVEECLDIVASRANEKSLNIAHVLDPHLAP 827
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ QI NL+ N++KFT G +++ NT E T R +
Sbjct: 828 WVMGDVTRLRQILVNLLGNAVKFTEKGEVVVF-------VQANTCELGTRRSQ------- 873
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L F V DTG GI + + +F+SF Q D STTR++GGTGLG
Sbjct: 874 ------------------RLTFAVLDTGIGIPPERMDRLFQSFSQVDASTTRQYGGTGLG 915
Query: 652 LSIVRTLVNKMGGEIKV 668
L I + L MGG++ V
Sbjct: 916 LVISQRLTTAMGGKMWV 932
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 31/214 (14%)
Query: 878 RGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSS 937
RG ++ KFR ++ P + S +L++ ++ + + P S
Sbjct: 1075 RGRQSHTDHDSEDKFRTTLYQ-----PFKQSHLYNNLVNLFTKQTSNSAQAVKATPLKQS 1129
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
S + L ILLAED + Q VA +L+++G VV +GL+ + AL
Sbjct: 1130 PFDSRLGEVYP-LSILLAEDNIVNQKVALNVLQRLGYVADVVANGLEVLSALK------- 1181
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS-ESEHGARNIP-IVAL 1055
+D+ILMD QMP+MDG EAT I++ +S + P I+A+
Sbjct: 1182 ----------------IKTYDVILMDIQMPEMDGLEATKLIKEHWQSMNQTALCPSIIAM 1225
Query: 1056 TAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
TA+AM D + C GM YL+KPI +V +
Sbjct: 1226 TANAMTGDRQICQEAGMEDYLSKPIQVPALVQVL 1259
>gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
Length = 1288
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 32/295 (10%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 687 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 746
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 747 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 806
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK +D
Sbjct: 807 AYQVDSSVPDFVTGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISK------SD 853
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
R++ +DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 854 REEC-------------------KDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 894
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S ++ +A
Sbjct: 895 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQSIRMINA 949
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1093 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAVKKR------------------- 1133
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E +G PI+ALTAHAM D +KC+
Sbjct: 1134 ----RYDVILMDVQMPVMGGFEATGKIREYEKSNGLSRTPIIALTAHAMLGDREKCIQAQ 1189
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1190 MDEYLAKPLKQNQMMQTILK 1209
>gi|381159961|ref|ZP_09869193.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380878025|gb|EIC20117.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 958
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 151/288 (52%), Gaps = 18/288 (6%)
Query: 382 LVIGCICILILTNGVS-KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAA 440
L I +C L + N + E++ ++ L +AE++N KS+FLAN++HE+RTP+
Sbjct: 344 LAIASLCGLAIANARTYAELQRTIAQVTQL--AEQAESANRAKSEFLANVTHEIRTPLNG 401
Query: 441 IIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500
+IG+ ++L + L EQ V I+ ALL L+N LD +KVE+G + LE F L
Sbjct: 402 VIGMTDLLL-ESALEREQCQRVETIRDCGTALLALVNDFLDFAKVEAGALRLETLPFALD 460
Query: 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHI 560
+ L + + + ++ ++ +P ++RGDPGR+ Q+ NL+ N+IKFT G +
Sbjct: 461 ELLHSALAILEPRARAQGLKLHQEIDIRVPLHLRGDPGRLRQVLINLLGNAIKFTEQGEV 520
Query: 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC 620
+ T AE P G A + +Q + L V DTG
Sbjct: 521 RV--------TIGLAAEAP------GSAQPGQPEQAEQTERPEEPGQPVRLRVAVSDTGI 566
Query: 621 GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKV 668
GI + K T+F F Q D STTR+ GGTGLGL+IV+ L MGGE+ V
Sbjct: 567 GIPEDKLGTLFAKFSQVDTSTTRRFGGTGLGLAIVKQLAELMGGEVGV 614
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LLAED + Q +A L ++G V V DG +A+ AL
Sbjct: 661 RVLLAEDNRVNQQIAEAQLARLGFEVRTVGDGFEALAALREQC----------------- 703
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
FDL+LMD QMP+MDG+ AT IR + +PI+A+TAHAM+ ++CL
Sbjct: 704 ------FDLVLMDVQMPRMDGFAATARIRTARDGVRTPTVPIIAMTAHAMHGYRERCLAA 757
Query: 1071 GMNAYLTKPIDSERMVSTILR 1091
GMN YL KP+ + + R
Sbjct: 758 GMNDYLVKPLQPADLAEVLGR 778
>gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 1351
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 60/374 (16%)
Query: 380 CILVIGCICILI--------------------LTNGVS-KEMKLRAELISHLDARRKAEA 418
C L+IG I +++ L VS K L A+ + +A KAE
Sbjct: 764 CALLIGVIILVVYLRTRLHQTEITKQKRFVHALEQQVSEKTASLEAQAHNLKNALEKAEE 823
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
+ KS+FLANMSHE+RTPM +IG+L++LK D LT EQ V S+ +LL L+N
Sbjct: 824 ATKLKSEFLANMSHEIRTPMNGVIGMLDLLKKSD-LTVEQGQRVNIASSSASSLLVLIND 882
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+ K+E+E+ +FDL+ +E L + + ++D+S V DP
Sbjct: 883 ILDFSKIEANKLEIESVDFDLRSLIETLAQSIAHTAQLKGLAVIVDVSKVDASKVNSDPT 942
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ QI +NL++N++KFT G + I L SKN ++
Sbjct: 943 RIQQILTNLLSNAVKFTEQGELSI---TAALLPSKNEGQY-------------------- 979
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
L V DTG GI+ K +FE+F Q D STTR++GGTGLGLSI + L
Sbjct: 980 -----------VLRCAVKDTGIGIEPRKLAQLFEAFTQVDASTTRRYGGTGLGLSITKKL 1028
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF-PNTVVVLATVGSMERMIIS 717
+GG++K + G+ ++ + +++K + +D P+T ++ R ++
Sbjct: 1029 CELLGGDVKASSEVGKGSCFEVIFEVNKVNDAKGVAPSDVAPHTHCLIVDSNVSNREVLK 1088
Query: 718 QWLRKKKVSTLETS 731
R+ V +ETS
Sbjct: 1089 ---RQLNVWGVETS 1099
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 922 RHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPD 981
H+ R P ++ ++ EGLR+LL ED + Q+VA ILE G TV V +
Sbjct: 1198 EHKADDFGRSAPVEEASHNATPHNSPEGLRVLLVEDNAINQLVATTILEGEGLTVDVANN 1257
Query: 982 GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKS 1041
G +A+ + LQ P + L++MDCQMP+MDG+E T IR
Sbjct: 1258 GKEAL---------------AFLQQPQQAKP----YSLVVMDCQMPEMDGFETTKHIRSG 1298
Query: 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
+ ++IPIVA+TA+AM +D+ KCL GMN +LTKPID E+++ T+ +
Sbjct: 1299 AAGAHYQSIPIVAITANAMQSDKDKCLQSGMNDFLTKPIDQEKVILTLQK 1348
>gi|418466816|ref|ZP_13037723.1| sensory histidine kinase [Streptomyces coelicoflavus ZG0656]
gi|371552605|gb|EHN79846.1| sensory histidine kinase [Streptomyces coelicoflavus ZG0656]
Length = 1828
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 154/290 (53%), Gaps = 32/290 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1362 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLI 1421
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKV++GKM++ T L +LVD + E LDLS +P
Sbjct: 1422 NDILDLSKVDAGKMDVSPTRI----ALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPAT 1477
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG + +IR P R + +A R
Sbjct: 1478 MHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIR---------------PA-RDEVPKAIR 1521
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L + A + E + + F V DTG GI SK + +FE+F+Q D +T+RK+GGTGL
Sbjct: 1522 EQLLE----AGSMNEPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGL 1577
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GLSI R + +GGEI + G+ LYL L S Y P+
Sbjct: 1578 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPHGYQQPLPS 1627
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 25/161 (15%)
Query: 929 RRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEA 988
RR S S++ G ++L+ +D +LE+ G +V +G + +E
Sbjct: 1686 RRSDDGQEPASQSSRGIRFGGQKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEV 1745
Query: 989 LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR 1048
L + ++LMD MP+MDGY T IR+ G
Sbjct: 1746 LEQH----------------------EDVAVVLMDIMMPEMDGYATTTAIRRMPQFAG-- 1781
Query: 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+PI+ALTA AM D +K + G + Y+TKP+D + +++ +
Sbjct: 1782 -LPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVM 1821
>gi|77361536|ref|YP_341111.1| sensory box sensor histidine kinase/response regulator
[Pseudoalteromonas haloplanktis TAC125]
gi|76876447|emb|CAI87669.1| putative Sensory box sensor histidine kinase/response regulator
[Pseudoalteromonas haloplanktis TAC125]
Length = 1256
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 161/295 (54%), Gaps = 39/295 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE + KS+F+AN+SHE+RTP+ A+ GLL++L + LT +Q Q K ++++
Sbjct: 649 AKHDAERATLAKSRFIANLSHEIRTPLNAVFGLLDML-IEQGLTPKQLEQTAQAKHAAHS 707
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL +LNR+LD ++VES +L+ F + + ++ + + C N +E ++D+ I
Sbjct: 708 LLLMLNRMLDFARVESVAAQLKLAPFSIVELVDICESLTAPLCENKGIELIIDIDPLISP 767
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
N+ D R+ Q+ NL+ N++KFT +G I ++ +D P+D +
Sbjct: 768 NLICDSIRLQQVLGNLLTNAVKFTKTGSITLK-----MDL------LPSDTSE------- 809
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
QQ +CF+V DTG GID++ +F++F QGD S+TR H G GLG
Sbjct: 810 ---QQH-------------ICFKVIDTGVGIDKADQRRLFDAFTQGDESSTRTHHGVGLG 853
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLA 706
L+IV++ V MGGEI + + G +LL KQ+ D NT+V+L+
Sbjct: 854 LAIVKSAVLLMGGEIALNSEKGEGCEFYFSVLLDVVPACKQLPD----NTLVILS 904
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
DLILMD QMP +DG +AT IR+ ++ A +PI ALTAH AD ++ L GMN +LT
Sbjct: 1068 DLILMDVQMPHLDGCQATTLIRQ---QYSAEQLPIFALTAHCEPADIERSLACGMNKHLT 1124
Query: 1078 KPIDSERMVSTILRLTKNMPS 1098
KP+ +E ++ I LT PS
Sbjct: 1125 KPVVAEVLIGAITDLTPYKPS 1145
>gi|428311457|ref|YP_007122434.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253069|gb|AFZ19028.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 716
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 157/305 (51%), Gaps = 39/305 (12%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LR + +A+ AE +N KSQFLANMSHELRTP+ AI+G ++L D LT EQ
Sbjct: 173 EAELRQSEATMQEAKEAAERANRAKSQFLANMSHELRTPLNAILGFTQLLIRDSSLTIEQ 232
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
++ I +S LL L+N +L +SK+E GK+ L+ FDL + L+ L MF +
Sbjct: 233 RESIEIINRSGEHLLELINDVLQMSKIEVGKVTLDQQSFDLYRLLDSLEAMFQLPAQKKG 292
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
++ + D + +P++V+ D ++ Q+ NL+ N++KFT+ G + +R
Sbjct: 293 LQLIFDYAPGLPQHVQTDENKLRQVLINLLGNALKFTAFGSVTLR--------------- 337
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDN-----------KLALCFEVDDTGCGIDQSKW 627
KLK + ++ + + N + L F V+DTG GI+
Sbjct: 338 ----------VSRKLKVEGSHELQVEKFNVESSTPPLNLQPVTLYFAVEDTGPGIEPEDL 387
Query: 628 ETVFESFEQGDPSTTRKHG-GTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686
+ +FE+F Q + RK GTGLGL I R V MGG+I V GT+ Q + +
Sbjct: 388 DLIFEAFIQT--AIGRKSSEGTGLGLPISRKFVQLMGGDITVNSTLGKGTIFQFEVQVSL 445
Query: 687 SSESK 691
SS ++
Sbjct: 446 SSATE 450
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 40/150 (26%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D P +++ K+L +G V +G +A+E NR
Sbjct: 471 RILVVDDAPESRLLLVKLLAALGFEVQEAVNGQEALEQWNRF------------------ 512
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-------ARNI----------PIV 1053
P LI MD +MP +DGYEAT +I+ E E G R + I+
Sbjct: 513 ---QPH--LIWMDMRMPILDGYEATQQIKAREQERGKDGKSTQGREVIHPSAPIGKTVII 567
Query: 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
ALTA A + + VG + ++ KP E
Sbjct: 568 ALTASAFEEERHLVVSVGCDDFVRKPFREE 597
>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 834
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 36/293 (12%)
Query: 384 IGCICILILTNGVSKEMKLRAELISHLD-ARRKAEASNNYKSQFLANMSHELRTPMAAII 442
I + I IL + E+ R + L A+ +AE ++ KS F+AN+SHE+RTPM AI+
Sbjct: 182 IAWVVINILIRKLRAEIDARKQTEKELILAKEQAETASEAKSFFVANVSHEIRTPMNAIL 241
Query: 443 GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502
G+ +++ D L Q + +I ++ +LL L+N ILD SK+E+GK+++EN F L
Sbjct: 242 GMCYLMQRTD-LDARQTDFLNRINVAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGV 300
Query: 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIII 562
L++L M + + + +E + +S ++P+ ++GDP R+ QI NL+NN+IKFT G I++
Sbjct: 301 LQQLAQMEAAKAAEKQLELIFSVSQDVPQRLKGDPDRLGQILLNLVNNAIKFTERGKIVV 360
Query: 563 RGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
T K++A + + + L F + DTG GI
Sbjct: 361 ------------TVRL--------------YKKEAGD------EGPVMLRFSIRDTGVGI 388
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+F +F Q D +R++ GTGLGL+I + LV MGG K+ K++PG
Sbjct: 389 APKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGG--KIWAKSTPG 439
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 20/147 (13%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+L+ ED P Q VA +L +G V + +GLQA+ + L R+ L
Sbjct: 477 RVLVVEDNPGNQEVARHLLGDLGLHVDICNNGLQAINRIKDAL----YRKEGL------- 525
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DLI MD QMP+MDG +AT +RK G P++A+TA A+ D+++CL
Sbjct: 526 ------WDLIFMDIQMPEMDGLQATQLLRKLP---GLDKTPVIAMTAMAIAGDKERCLKA 576
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMP 1097
GMN Y+TKPID ++ T+ + P
Sbjct: 577 GMNDYITKPIDVNQLYRTLKAWMREAP 603
>gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88]
Length = 1288
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 32/295 (10%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 687 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 746
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 747 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 806
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK +D
Sbjct: 807 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISK------SD 853
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
R++ +DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 854 REEC-------------------KDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 894
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S ++ A
Sbjct: 895 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQSIRMISA 949
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1093 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAVKKR------------------- 1133
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E +G PI+ALTAHAM D +KC+
Sbjct: 1134 ----RYDVILMDVQMPVMGGFEATGKIREYEKSNGLSRTPIIALTAHAMLGDREKCIQAQ 1189
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1190 MDEYLAKPLKQNQMIQTILK 1209
>gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
Length = 1290
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 146/275 (53%), Gaps = 32/275 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 699 LRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 758
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 759 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 818
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK+T E
Sbjct: 819 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISKSTREIC-- 869
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+D + A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 870 -----------------------QDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGST 906
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TRK GGTGLGLSI + LVN MGG++ V + G+
Sbjct: 907 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGS 941
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 81/140 (57%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GL AVEA+ +
Sbjct: 1105 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLAAVEAVKQH------------------- 1145
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E E G PI+ALTAHAM D +KCL
Sbjct: 1146 ----RYDVILMDVQMPIMGGFEATGKIREWEKETGLSRTPIIALTAHAMLGDREKCLQAQ 1201
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1202 MDEYLAKPLKQNQMMQTILK 1221
>gi|392307758|ref|ZP_10270292.1| sensor protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1105
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 159/284 (55%), Gaps = 36/284 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
++A+ AE ++ KS+FLA+MSHE+RTPM ++G+L +L + LT+EQ+ S+
Sbjct: 557 IEAKAMAENASIAKSEFLASMSHEIRTPMNGVLGMLNLLLNS-SLTDEQHHRARVAMGSA 615
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
+LL L+N ILD SKV++GK+ELE +FDL+ L E + ++Q +E +L+++D
Sbjct: 616 NSLLTLINDILDFSKVDAGKLELEYLDFDLRGMLGEFAESAAIQAHEKQLELILNMTDIN 675
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
V+GDPGR+ QI +NL++N+IKFT+ G ++I +L S +T
Sbjct: 676 ESVVKGDPGRLRQILTNLVSNAIKFTNEGEVVIE---TSLTDSDDT-------------- 718
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+ L C + DTG GI + +F+SF Q D STTRK+GGTG
Sbjct: 719 -----------------HWLFECI-IRDTGIGISHVQQRKLFKSFSQVDASTTRKYGGTG 760
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
LGL+IV+ L M G++ V G+ + L S+ S Q+
Sbjct: 761 LGLAIVKKLCELMHGDVSVNSDVGRGSQFTFAVKLQKSAGSLQV 804
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 36/190 (18%)
Query: 905 GESSSRREDLIHTMFRE--RHQIGSSRRD-QPCSSSNSSSNQKRILEGLRILLAEDTPLI 961
GE+ ++ E L+ T + + +H++G+ D + C S +RILLAED +
Sbjct: 939 GEALAKAEPLVTTHYIKTLKHKVGAEIGDVEWCQS-------------VRILLAEDNQVN 985
Query: 962 QIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020
QIVA + +K+G + + V +G + + L + +E + +I
Sbjct: 986 QIVATSMFKKMGISFIDVAANGKEVISYLKQAQHSEP-------------------YKVI 1026
Query: 1021 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080
MDCQMP+MDGYEAT IR+ ++ + IPI+A+TA+AM D+ KCL GM+ Y+ KPI
Sbjct: 1027 FMDCQMPEMDGYEATHAIRQGKAGALYKEIPIIAMTANAMVGDKNKCLEAGMDDYVAKPI 1086
Query: 1081 DSERMVSTIL 1090
E + +L
Sbjct: 1087 VPEVLYEKML 1096
Score = 44.3 bits (103), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L +L+ +D + V LE GA VS G+QA+ A+ + E +R
Sbjct: 813 LHLLIVDDNDTNREVLRGQLEHWGAQVSEAASGVQAL-AICELYYEEHNRC--------- 862
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
FD+ +D QMP MDG + + ++ +N+ +V +T+ D +
Sbjct: 863 -------FDITFLDMQMPNMDGAQLGKALLANQR---FKNMKLVMMTSMGHQGDARFFAD 912
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKN 1095
+G + Y KP + + + +T+N
Sbjct: 913 LGFSGYFPKPATTSDLFDALAIVTEN 938
>gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 915
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 135/559 (24%), Positives = 247/559 (44%), Gaps = 88/559 (15%)
Query: 198 VPDGVASWHVAVSKFTNSPL-LSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVE 256
+ G +W + + S L ++A+ P++D T ++ V V +LS +G ++ L
Sbjct: 174 IEQGGPAWSPIHALYAQSILAINASQPLYDET---GTLRGVFTVNFSLSQIGNFLRNLKI 230
Query: 257 VHSGHIYLTSQEGYLLATSTNA-PLLTNSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSK 315
SG ++ + G L+A+S N P + +KA + +P+I+ A++L ++G
Sbjct: 231 GRSGQTFIVERSGELVASSANVLPFTITAQKKATRIKATEFGSPLIRATAKYLVEDFGGL 290
Query: 316 VPPGHVIHVQNAKL---GHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLI 372
+ +N +Q+ F + + L + V+++P M + + T+I
Sbjct: 291 ---NQITQSKNLTFLVENQRQFVQVLPFSDSRNLDWLIVVVVPESDFMEQINANTNTTII 347
Query: 373 I-----LISASVCILVIGCICI-------------------LILTNGVSK---------- 398
+ LI+ + IL I + ++ GVS+
Sbjct: 348 LCIFALLIATGLGILTSQWIAVPIQRLSQASSAIADGKLNQTVIVKGVSEIQVLGESFNK 407
Query: 399 ------------EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
E++++ +A+ AE +N+ KS+FLANMSHELRTP+ I+G +
Sbjct: 408 MARQLQDSFTALEVRVKQRTAELQEAKLAAELANSAKSEFLANMSHELRTPLNGILGYAQ 467
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
IL + + I++ LL L+N ILDLSK+E+ KME+ +F L+ +
Sbjct: 468 ILMRSKNIQETDLKGLGIIQQCGSHLLTLINDILDLSKIEARKMEIYPNQFHFLAFLQAV 527
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIR-GW 565
++ ++ + + +P +V+ D R+ Q+ NL+ N++KFT G + + G
Sbjct: 528 SEIVRIKAEQKGITFISQFDPALPVSVQADEKRLRQVLINLLGNAVKFTEEGSVTFKVGV 587
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
E+ + F NA+N + F+++DTG G+ +
Sbjct: 588 IESSTIDAEASTF--------------------NAIN-------KIRFQIEDTGLGMSEE 620
Query: 626 KWETVFESFEQ-GDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
+ + +F+ FEQ GD + R+ GTGLGL+I +V M +I+V + G+ L L
Sbjct: 621 QKQKIFDPFEQVGD--SKRRAEGTGLGLAISSKIVEVMSSQIRVTSQLGEGSQFWFDLDL 678
Query: 685 GASSESKQIYDADFPNTVV 703
+SE D T+V
Sbjct: 679 PCASEFTLKPTFDLKGTIV 697
Score = 43.9 bits (102), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
D I+ D MP MDG+E +R S+ ++ ++ +A AD+ K L G NA+L
Sbjct: 749 DAIITDLIMPIMDGFELLRRLRISDQ---FKDTVVIVSSASVFEADQYKSLEAGANAFLP 805
Query: 1078 KPI 1080
KP+
Sbjct: 806 KPV 808
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 146/269 (54%), Gaps = 17/269 (6%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+A A+ KS+FLA MSHE+RTPM A+IG+ +L D L EQ V ++ S ALL
Sbjct: 674 EALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTD-LNPEQRDFVETVRASGDALLT 732
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+ESGK++LE F+L+ +E+ +D+ + + + VE + + P +
Sbjct: 733 IINDILDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMII 792
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GD RV QI NL++N++KFT G +++ + +A P G
Sbjct: 793 GDVTRVRQILVNLLSNAVKFTEKGEVVV--------SVSASAIPPQQAGGIGTDSLILKD 844
Query: 595 QQANNAMNFREDNKLA-----LC---FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646
Q+ N ++ N + LC F V DTG GI + +F+SF Q D STTR++G
Sbjct: 845 QETTNGHLHKDLNPDSSAGNPLCQIQFTVSDTGIGIPPERMNRLFKSFSQVDSSTTREYG 904
Query: 647 GTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
GTGLGL+I + L MGG + VV G
Sbjct: 905 GTGLGLAISKRLSELMGGRMWVVSGEGVG 933
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 24/141 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA +IL ++G V +G++ ++AL+R
Sbjct: 1153 LRILLAEDHLVNQKVALQILHRLGYRADVAGNGIEVLQALDRQ----------------- 1195
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD MP+MDG AT +I + + + P I+A+TA+AM D + CL
Sbjct: 1196 ------HYDVVLMDVHMPEMDGLAATRQICQDALDGRLSHRPRIIAMTANAMQGDRELCL 1249
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GM+ Y++KPI +V +
Sbjct: 1250 DAGMDDYISKPIRMPELVEAL 1270
>gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR]
Length = 1288
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 32/295 (10%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 687 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 746
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 747 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 806
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK +D
Sbjct: 807 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISK------SD 853
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
R++ +DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 854 REEC-------------------KDNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 894
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDA 696
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S ++ A
Sbjct: 895 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQSIRMISA 949
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1093 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAVKKR------------------- 1133
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E +G PI+ALTAHAM D +KC+
Sbjct: 1134 ----RYDVILMDVQMPVMGGFEATGKIREYEKSNGLSRTPIIALTAHAMLGDREKCIQAQ 1189
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1190 MDEYLAKPLKQNQMIQTILK 1209
>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
Length = 1029
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 49/394 (12%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+S ++ VI + IL + +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 362 LSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 421
Query: 435 RTPM-AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM + L +L+++ T Y+ Q AL+ L+N +LD +K+E+GK+ELE
Sbjct: 422 RTPMNGILGMLGLLLRTELNSTQRDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLELE 479
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FDL+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 480 AVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVK 539
Query: 554 FTSSGHIIIR-GWCENL--------DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN-- 602
FT GHI ++ EN +T +N G +T +A + N
Sbjct: 540 FTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNW 599
Query: 603 -------------------------FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
F E L +C V+DTG GI S + +F F Q
Sbjct: 600 DNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVC--VEDTGIGIPFSAQDRIFMPFVQA 657
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS-----SESKQ 692
D ST+R +GGTG+GLSI + LV MGG+I + + G+ G +E K+
Sbjct: 658 DSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKK 717
Query: 693 IYDADFPNTVVVLATV---GSMERMIISQWLRKK 723
+ D P++ L V G R ++++ K+
Sbjct: 718 VNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKR 751
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 34/173 (19%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S++ + +L G +IL+ +D + + VA L+ GA V G A+E L
Sbjct: 875 NGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEML-------- 926
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------SEHGAR- 1048
+ P +FD MD QMP+MDG+EAT IR+ E SE G R
Sbjct: 927 ------------QFPH--KFDACFMDIQMPEMDGFEATRRIREMERTANEETNSECGERK 972
Query: 1049 ---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
++PI+A+TA ++A ++CL GM+ Y++KP + E + + + + P+
Sbjct: 973 SEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPT 1025
>gi|443313166|ref|ZP_21042778.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442776571|gb|ELR86852.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 792
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 159/307 (51%), Gaps = 46/307 (14%)
Query: 380 CILVIGCICILILTNGV---SKEMKLRAELISHLDAR-----RKAEASNNYKSQFLANMS 431
I+++G + + +L+ GV +K++++ E + + + ++A A+N KS FLANMS
Sbjct: 289 TIVLVGLVSVGLLSTGVYWLTKQLQISREQLENYSHKLEQKAQEALAANRAKSAFLANMS 348
Query: 432 HELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
HELRTP++AI+G +++ D L + Q + I +S LL L+N +L +SK+E+G +
Sbjct: 349 HELRTPLSAILGFTQLMTRDRTLDSAQLENLAIISRSGEHLLTLINDVLSMSKIEAGSII 408
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
L+ F+L L+ L +MF+++ +E + + S ++P + D ++ Q+ NL+ N+
Sbjct: 409 LDENSFNLNSLLDSLAEMFAIKAEAKGLELIFERSQDLPNYLHADESKLSQVLINLLGNA 468
Query: 552 IKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611
IKFT +G +I+R N + L L
Sbjct: 469 IKFTETGRVILRASVIN-------------------------------------NEHLTL 491
Query: 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671
FEV+DTG GI+ + E +F+ F Q + + H GTGLGLSI + M GEI +
Sbjct: 492 HFEVEDTGTGIESHELEKLFKPFVQTQ-AGQKSHQGTGLGLSISQQFACLMSGEIALKST 550
Query: 672 NSPGTLM 678
S GT+
Sbjct: 551 PSQGTVF 557
Score = 47.0 bits (110), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP MDGY+AT R +S+ ++ I+ALTA A + + L G + ++ K
Sbjct: 636 LIWMDMRMPVMDGYQAT---RHIKSQLNGQSTIIIALTASAFDEERALVLSAGCDDFVCK 692
Query: 1079 PI 1080
P
Sbjct: 693 PF 694
>gi|224104183|ref|XP_002333975.1| predicted protein [Populus trichocarpa]
gi|222839404|gb|EEE77741.1| predicted protein [Populus trichocarpa]
Length = 1119
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 257/544 (47%), Gaps = 59/544 (10%)
Query: 165 WYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPV 224
WYR+P+D TG G A P N + I Q + + S + ++
Sbjct: 151 WYRQPVDSDTGTVYGDAVKSLPFIKTNASWIEQALNSSQGYASFESGWNDAQ-------- 202
Query: 225 WDPTTSNKSIVAVVGVTTALSSVGQLMKEL--VEVHSGHIYLTSQEGYLLATSTNAPLLT 282
DP N + GV + S L L VE++ G +YL +Q G +L L
Sbjct: 203 -DPLFLNTVSLLRQGVLSLGFSAKALTSFLNNVELYGGSLYLATQSGKVLVGG-----LP 256
Query: 283 NSSTGPNLVKAVDSDNPVIQMGAQWLQSEYGSKVPPGHVIHVQNAK-------------- 328
N+ T V +N V S Y +K+ + HV N
Sbjct: 257 NTQT-------VIKENSV---------SLYMTKLNGDQIDHVGNVSCMPNNGKQEDSVLY 300
Query: 329 LGHKQYYMDTFFLNLKRLPIVGVIIIPREYIMGKADERAYKTLIILISASVCILVIGCIC 388
LG +Y + + + + V ++ P + + +LI+ I I +
Sbjct: 301 LGEAKYRVSCSQVEIVGVQSVYALVFPYNGLASSVNRSIKISLILFIILIAAIFISIVSF 360
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+L++ +E+ L + LI ++A ++AE + KS A SH++R +A I GL+EI
Sbjct: 361 VLLVVRAARREIHLCSALIKQMEATQQAERKSMNKSLAFATASHDIRAALAGITGLIEIC 420
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
++ + +E + + Q+ + L+ LLN ILD SK+E+GKM+LE EFDL K LE+ VD
Sbjct: 421 YAEVRAGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVD 480
Query: 509 MFSVQCSNHNVETVLDLSD-NIPRN--VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGW 565
++ V+ VLD D +I ++ V+GD G++ Q+ NL++N++KFT G + +R W
Sbjct: 481 LYHPVGMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTFEGQVSVRAW 540
Query: 566 CENLDTSKNTAEFPTDRKKFGRAFRT---KLKQQANNAMNFREDNKLALCFEVDDTGCGI 622
+ S +++ R F K K++ N+ ++ + + FEV+DTG GI
Sbjct: 541 TQK--PSLENKIIASNQNGLWRCFSCLFFKNKKEFNDVK--QKQSSMEFVFEVNDTGKGI 596
Query: 623 DQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS--PGTLMQL 680
+ K ++VFE+F Q T GGTGLGL IV++LV MGGEI +V K + GT +
Sbjct: 597 PKEKQKSVFENFVQ-VKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGEKGTCFKF 655
Query: 681 YLLL 684
+ L
Sbjct: 656 NVFL 659
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 26/145 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GL+ L+A+D + + V IL+ GATV V +G ++ + L R++
Sbjct: 989 LSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEESFQ-LVRIVYG----------- 1036
Query: 1007 SPSETPDTPRFDLILMDC--QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADE 1064
+ +L+ C QMPKMDG EAT +IRK E +G +IPI+A +A +
Sbjct: 1037 -----------NHVLISCIQQMPKMDGCEATRQIRKKEKFYGV-HIPILAFSADNSGGEG 1084
Query: 1065 KKCLGVGMNAYLTKPIDSERMVSTI 1089
KK G + + K I++E++ TI
Sbjct: 1085 KKMKEAGTDGRVNKKINTEQLEETI 1109
>gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
Length = 919
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 157/293 (53%), Gaps = 36/293 (12%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
I+ L +++ ++ ELI ARR AE +N KS+FLANMSHE+RTPM A++G +L
Sbjct: 571 IMALVQDITERKQVHQELI----ARRSAEEANRAKSRFLANMSHEIRTPMNAVLGFARML 626
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
++D L +Q + I +S LL+LLN ILD+S++E+G+ L +F L +++L+
Sbjct: 627 ENDPALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDKLMT 686
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
MF + + +E VL+ ++P ++ D G++ QI +NL++N+IKFTS+G + +
Sbjct: 687 MFELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKL------ 740
Query: 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE 628
+K A+ A E+ L L F+V D+G GI
Sbjct: 741 -------------------TISSKPPGPADTAC---EEQDLGLVFQVQDSGPGITAQDQA 778
Query: 629 TVFESFEQGDPSTTRKH-GGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+FE F Q + + H GGTGLGL+I R MGG + V + G+ +L
Sbjct: 779 QLFEPFFQ---TQNKMHPGGTGLGLTISREYAVLMGGNLTVSSQEGRGSCFRL 828
>gi|124262616|ref|YP_001023086.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
gi|124261862|gb|ABM96851.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
Length = 527
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 28/268 (10%)
Query: 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILD 481
KS+FLA MSHE+RTP+ ++G E+L+ + E+ V + +SS AL+ L+N ILD
Sbjct: 1 MKSRFLATMSHEIRTPLNGVVGAAELLQKNGLSEREKAQMVSLLTQSSRALMALINDILD 60
Query: 482 LSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVF 541
SK++ GK+ +E +L+ + E ++F+ Q +N ++E + ++PR + GDP R+
Sbjct: 61 WSKLDVGKVMIERHPINLRALVFESNELFAAQAANKDIELTSSCNPDVPRTLHGDPTRIR 120
Query: 542 QIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAM 601
QI +NL++N++KFT G + I + +D P++R + G ++
Sbjct: 121 QIVNNLVSNAVKFTERGGVHIHLSIDGID--------PSERHQEGDPRTVRI-------- 164
Query: 602 NFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661
EV DTG GI K +F++F QGD S TR GGTGLGL I + L N
Sbjct: 165 ------------EVSDTGIGISPEKLGKLFKAFSQGDVSVTRNFGGTGLGLVISQELANL 212
Query: 662 MGGEIKVVKKNSPGTLMQLYLLLGASSE 689
MGG I+V G++ L + A+ +
Sbjct: 213 MGGRIEVSSTPGVGSVFTALLPMIATDQ 240
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 24/155 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L GLR+L+AED + Q+V +L + A S+ +G +A++AL AE
Sbjct: 382 LRGLRVLIAEDNQVNQVVFQAMLAQAEADCSIARNGQEALDAL-----AEH--------- 427
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEH-GARNIPIVALTAHAMNADEK 1065
+FD++LMD QMP +DG A E+R ES + G+ +VA+TA+ D
Sbjct: 428 ---------KFDVVLMDVQMPVLDGISAVRELRARESSNPGSGRTTVVAMTANTEPQDIA 478
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
+C GM+ +L KP ++ S + R P+ A
Sbjct: 479 QCRSAGMDDFLPKPFSIGQLTSVLARHAHRSPAAA 513
>gi|149927944|ref|ZP_01916194.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
[Limnobacter sp. MED105]
gi|149823383|gb|EDM82616.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
[Limnobacter sp. MED105]
Length = 755
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 150/280 (53%), Gaps = 31/280 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ KA+ SN+ KSQF+ANMSHE+RTP+ I+GL EI+ S+ L + + I+ S+
Sbjct: 253 AKLKADKSNDLKSQFVANMSHEIRTPLNGILGLTEIILSNSALAEKPRRNLELIQLSAEH 312
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLR++N ILD SK+++ ++++ F+L+ ++ +V M S + +V TVLD+ ++P
Sbjct: 313 LLRVVNDILDFSKIDANCLDMDPQPFELRPNVQAMVKMVSSAYAKPHVATVLDIDPDVPN 372
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ Q+ +NL++N++KFT G + +
Sbjct: 373 YLFGDCPRIMQVLNNLLSNALKFTQHGQV---------------------------SLTI 405
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
K KQ + +K + F V DTG GI +S +F++F Q +P T RK+GGTGLG
Sbjct: 406 KTKQGTEKT----QKSKSKIHFAVRDTGMGISESARTEIFKAFSQAEPGTARKYGGTGLG 461
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
L+I + L+ M I + + G+ L L E K
Sbjct: 462 LTITQRLLELMNSRIHLWSEEGVGSEFSFTLELPIVEEQK 501
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GLR+L+AED + Q +L ++G + DGL A++A+
Sbjct: 529 GLRVLVAEDNMVNQTFISHVLTQLGISYRFADDGLAALQAV------------------- 569
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
D +FDL+ MD MP M G EA I ++ +H +N+PIV LTA A+ + C+
Sbjct: 570 ----DQEKFDLVFMDMHMPNMGGLEACRAIL-AKPQH--KNLPIVGLTADAIADTREACM 622
Query: 1069 GVGMNAYLTKPIDSERMVSTILRLTKNM 1096
GM Y++KP + + + RL N+
Sbjct: 623 SAGMREYISKPFKRSDIEAVLARLKFNV 650
>gi|93609097|gb|ABF13477.1| DRK1 histidine kinase [Ajellomyces dermatitidis]
Length = 1274
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 686 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 745
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 746 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 805
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G +
Sbjct: 806 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV--------------------- 844
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ R+ R + K DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 845 KLAISRSDREECK-----------DNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 893
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 894 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQS 942
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 72/140 (51%), Gaps = 36/140 (25%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1092 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAIKKR------------------- 1132
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G E PI+ALTAHAM D +KC+
Sbjct: 1133 ----RYDVILMDVQMPVMGGLEVL-------------RTPIIALTAHAMLGDREKCIQAQ 1175
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1176 MDEYLAKPLKQNQMIQTILK 1195
>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
Length = 1013
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 154/289 (53%), Gaps = 41/289 (14%)
Query: 389 ILILTNGVSKEM--KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLE 446
+L GV+ ++ + RAE L AR +A + KS+FLA MSHE+RTPM +IG+
Sbjct: 450 MLYAVGGVATDITDRKRAEEALAL-ARDQAMEAARLKSEFLATMSHEIRTPMNGVIGMTN 508
Query: 447 ILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEEL 506
+L + LT EQ ++ S LL ++N ILD SK+E+G++ LE +FD + +++
Sbjct: 509 LLL-ESALTPEQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDFDFRGMIDDT 567
Query: 507 VDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWC 566
+D+ + Q ++ V + ++P VRGDPGR+ Q+ NL+ N+IKFT G +++R
Sbjct: 568 LDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDRGEVVLR--- 624
Query: 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK 626
+ Q A + + R D V DTG GI
Sbjct: 625 ------------------------MTVAQDAQSHVVLRGD--------VTDTGIGISPEG 652
Query: 627 WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+F++F Q D STTR++GGTGLGL+I + L M GEI + +++PG
Sbjct: 653 RNKLFQTFSQVDASTTRRYGGTGLGLAICKRLTELMQGEIGM--ESAPG 699
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 25/144 (17%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
+L+ +D L Q+VA +LE++G V V AES + + + S
Sbjct: 889 VLVVDDQKLNQVVAVSLLERLGCLVDV----------------AESGQAAAEAVAATS-- 930
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
+DL+ MDCQM MDGY+A IRK E G +PI+ALT H +D +CL G
Sbjct: 931 -----YDLLFMDCQMFGMDGYQAAALIRKREG--GGPRVPIIALTGHMQQSDRAQCLAAG 983
Query: 1072 MNAYLTKPIDSERMVSTILRLTKN 1095
M+ LTKP+ + + + R K
Sbjct: 984 MDDCLTKPLQFTLLEAMLRRWLKK 1007
>gi|428771474|ref|YP_007163264.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
gi|428685753|gb|AFZ55220.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
Length = 932
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 145/279 (51%), Gaps = 33/279 (11%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+A++KAE +N KS FLANMSHELRTPM AI+G +I+ L+ EQ + I++S
Sbjct: 459 EAKQKAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSQTLSPEQLENISIIQRSGN 518
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL L+N +LDLSK+E+GKM L FDL LEE+ D+ ++ + ++ L++ +P
Sbjct: 519 YLLNLINNVLDLSKIEAGKMTLNEKNFDLHALLEEIEDLLQLKAEDKGLQLNLEIDTYVP 578
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
R V D ++ Q+ NL+NN IKFT G + I + S T E
Sbjct: 579 RFVCTDETKLRQVLINLVNNGIKFTEEGGVNIL-----VSLSNQTLEM------------ 621
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+N+ + F V+DTG GI Q VFE+F Q + + GTGL
Sbjct: 622 ---------------ENQRYIKFAVEDTGAGIAQEDLSKVFEAFTQTEVGRNVQE-GTGL 665
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSE 689
GL I R V MGG+I++ G++ +++ +E
Sbjct: 666 GLPISRRFVQLMGGDIEIQSTLGEGSIFSFEIVVTLVTE 704
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP MDGYEAT I+ + + I+ALTA + ++ L G + ++ K
Sbjct: 774 LIWMDMRMPVMDGYEATQYIKGTLKGNAT---AIIALTASVLEEEKAVILSAGCDDFIRK 830
Query: 1079 PI 1080
P
Sbjct: 831 PF 832
>gi|387126922|ref|YP_006295527.1| sensor histidine kinase/response regulator [Methylophaga sp. JAM1]
gi|386273984|gb|AFI83882.1| sensor histidine kinase/response regulator [Methylophaga sp. JAM1]
Length = 1139
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 153/273 (56%), Gaps = 36/273 (13%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY-STVCQIKKSS 469
+++ AEA+N KSQFLANMSHE+RTPM AI+G E+L D+Q+T + S + I+ +
Sbjct: 646 ESKTHAEAANLAKSQFLANMSHEIRTPMNAILGFTELL--DEQITEPRLKSFIKTIRSAG 703
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
LL L+N ILDLSK+E+GK++L T D +E+ +MF +Q N ++ LD+ ++
Sbjct: 704 NTLLLLINDILDLSKIEAGKLQLNKTATDPHLLFDEIANMFVLQIRNKDLALHLDIDPDL 763
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
P + D R+ Q+ NLI+N++KFT +GHI I +N+D
Sbjct: 764 PHGLLLDATRLRQVLFNLISNAVKFTDTGHIRIHVHADNVDDHL---------------- 807
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
+KL L V+DTG GI +++ E +FE F Q RK+GGTG
Sbjct: 808 -----------------SKLDLHIRVEDTGIGIPEAEVEHIFEIFAQQSGQDVRKYGGTG 850
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
LGLSI R L+ MGG I++ K+ G++ + L
Sbjct: 851 LGLSITRRLIEMMGGHIRLQSKSGEGSVFSIDL 883
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAM-NADEKKCLGVGMNAYL 1076
DL+LMD +MP MDGYEA +I+ + ++P+VALTA M +A E+ L +AYL
Sbjct: 958 DLVLMDIRMPVMDGYEAAKQIKMIKP-----DLPMVALTASVMKDAYEQDRLD-HFDAYL 1011
Query: 1077 TKPI 1080
KP+
Sbjct: 1012 RKPV 1015
>gi|357635433|ref|ZP_09133311.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357583987|gb|EHJ49320.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 1340
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 138/257 (53%), Gaps = 32/257 (12%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
+ K FLANMSHE+RTP+ A++G ++++ D +L Q + +++S+ LL L+N
Sbjct: 821 GSQAKGAFLANMSHEIRTPLNAVLGYVQLMLRD-RLEPRQRERLAVVEESAATLLSLIND 879
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+G+MEL+N FDL L +V V N ++ L + +PR+VRGD
Sbjct: 880 ILDYSKIEAGRMELKNESFDLPACLAAVVKEQEVLARNKGLDLTLAMGPEVPRDVRGDGL 939
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ Q+ NL++N++K+T +G + + T T E P G A R L+
Sbjct: 940 RLRQVLRNLLSNAVKYTEAGSVAV--------TVSRTGELP---GPAGEAPRQILR---- 984
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
F V DTG GI + + +F+SF Q D TR+ GTGLGL+I R L
Sbjct: 985 --------------FAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGTGLGLAICRRL 1030
Query: 659 VNKMGGEIKVVKKNSPG 675
MGG + V ++ PG
Sbjct: 1031 AGLMGGGVFV--ESVPG 1045
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 24/147 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q + LRILL ED + ++ A +LE G V++ +G A++ L R
Sbjct: 1081 QAEAMPRLRILLVEDNRVNRVFAGDLLESRGHEVAMAENGRAALDFLAR----------- 1129
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
R D++LMD QMP MDG AT IR E +P+V L+A+AM+
Sbjct: 1130 ------------ERVDVVLMDIQMPVMDGLAATRAIRAGEGGIDP-TLPVVGLSAYAMDQ 1176
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ ++ L G++ Y+TKPID E +
Sbjct: 1177 ERERFLAAGLDGYITKPIDVEAFFEVV 1203
>gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
Length = 1287
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 686 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 745
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 746 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 805
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G +
Sbjct: 806 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV--------------------- 844
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ R+ R + K DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 845 KLAISRSDREECK-----------DNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 893
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 894 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQS 942
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1092 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAIKKR------------------- 1132
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E ++G PI+ALTAHAM D +KC+
Sbjct: 1133 ----RYDVILMDVQMPVMGGFEATGKIREYEKKNGLSRTPIIALTAHAMLGDREKCIQAQ 1188
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1189 MDEYLAKPLKQNQMIQTILK 1208
>gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188]
Length = 1287
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 686 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 745
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 746 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 805
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G +
Sbjct: 806 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV--------------------- 844
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ R+ R + K DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 845 KLAISRSDREECK-----------DNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 893
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 894 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQS 942
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1092 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAIKKR------------------- 1132
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E ++G PI+ALTAHAM D +KC+
Sbjct: 1133 ----RYDVILMDVQMPVMGGFEATGKIREYEKKNGLSRTPIIALTAHAMLGDREKCIQAQ 1188
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1189 MDEYLAKPLKQNQMIQTILK 1208
>gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3]
Length = 1287
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 686 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 745
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E F ++ + + +V+ + +
Sbjct: 746 LNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKANEKFLSL 805
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G +
Sbjct: 806 AYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHGEV--------------------- 844
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ R+ R + K DN+ A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 845 KLAISRSDREECK-----------DNEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGST 893
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 894 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGLGSSFHFTCVVELADQS 942
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 83/140 (59%), Gaps = 23/140 (16%)
Query: 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSET 1011
ILLAED + Q VA KILEK V+VV +GLQAVEA+ +
Sbjct: 1092 ILLAEDNDVNQRVAVKILEKCNHGVTVVSNGLQAVEAIKKR------------------- 1132
Query: 1012 PDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG 1071
R+D+ILMD QMP M G+EAT +IR+ E ++G PI+ALTAHAM D +KC+
Sbjct: 1133 ----RYDVILMDVQMPVMGGFEATGKIREYEKKNGLSRTPIIALTAHAMLGDREKCIQAQ 1188
Query: 1072 MNAYLTKPIDSERMVSTILR 1091
M+ YL KP+ +M+ TIL+
Sbjct: 1189 MDEYLAKPLKQNQMIQTILK 1208
>gi|456387662|gb|EMF53152.1| sensory histidine kinase [Streptomyces bottropensis ATCC 25435]
Length = 1794
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 155/288 (53%), Gaps = 24/288 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ LT +Q I + LL+L+
Sbjct: 1325 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFAETIHGAGSDLLQLI 1384
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1385 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1444
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR A+ P +K
Sbjct: 1445 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGADVPV-----------AIK 1484
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + R+ + + F V DTG GI K +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1485 EQLLEAGSLRDADADMIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1544
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV 702
R + +GGEI + G+ LYL L S Q Y P+++
Sbjct: 1545 SREIARLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGYANSAPDSL 1592
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1720 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIDSGASDYVTK 1776
Query: 1079 PIDSERMVSTI 1089
P+D + ++ +
Sbjct: 1777 PVDPDHLLEVM 1787
>gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
Length = 773
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 146/268 (54%), Gaps = 38/268 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + K++FLANMSHELRTP+ +IG ++LK+ +T++Q + I +S+
Sbjct: 271 AKKRAQEAVRIKTEFLANMSHELRTPLNGVIGFTRQMLKTP--ITSQQMEYLYVIDRSAN 328
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL+++N ILD S++ES K+ LE F L+ + E++++ + + N+ + D +P
Sbjct: 329 NLLKIINDILDFSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVKNLPLHHHIDDKLP 388
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ GDP R+ QI +NLI N+IKFT G G
Sbjct: 389 NLMIGDPIRLQQILTNLIGNAIKFTDKG---------------------------GVTLD 421
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
KL+QQ ++ + F V DTG GI +F++F Q D S TR +GGTGL
Sbjct: 422 IKLRQQQHHLIQID--------FTVTDTGIGIKPEHRPILFQAFNQADASITRHYGGTGL 473
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLM 678
GLSI + LVN+M GEI + + S GT+
Sbjct: 474 GLSITKRLVNEMKGEIDFISEVSKGTVF 501
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
DLILMD QM MDG +A+ E+ +H R PIVA+TA + N + YL
Sbjct: 576 LDLILMDIQMADMDGIQAS-ELIHQLPQH--RETPIVAVTAFSNNETK----NTPFIDYL 628
Query: 1077 TKPIDSERM 1085
+KP+D +
Sbjct: 629 SKPLDENHL 637
>gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS]
Length = 1284
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 695 LRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 754
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 755 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 814
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK+T E
Sbjct: 815 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISKSTRELC-- 865
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+D + A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 866 -----------------------QDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGST 902
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ + + +S
Sbjct: 903 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGSTFHFTCKVNLADQS 951
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 31/162 (19%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R P ++ N+ S ILLAED + Q VA KILEK V+VV +GL AVEA+
Sbjct: 1087 RSTPLTTDNTRS--------FDILLAEDNDVNQKVAVKILEKCNHGVTVVSNGLAAVEAV 1138
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ R+D+ILMD QMP M G+EAT +IR+ E E+G +
Sbjct: 1139 KQH-----------------------RYDVILMDVQMPIMGGFEATGKIREWEKENGLQR 1175
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
PI+ALTAHAM D +KCL M+ YL KP+ +M+ TIL+
Sbjct: 1176 TPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQTILK 1217
>gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides
posadasii str. Silveira]
Length = 1285
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 699 LRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 758
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 759 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 818
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK+T E
Sbjct: 819 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISKSTRELC-- 869
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+D + A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 870 -----------------------QDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGST 906
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ + + +S
Sbjct: 907 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGSTFHFTCKVNLADQS 955
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 31/162 (19%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R P ++ N+ S ILLAED + Q VA KILEK V+VV +GL AVEA+
Sbjct: 1091 RSTPLTTDNTRS--------FDILLAEDNDVNQKVAVKILEKCNHGVTVVSNGLAAVEAV 1142
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ R+D+ILMD QMP M G+EAT +IR+ E E+G +
Sbjct: 1143 KQH-----------------------RYDVILMDVQMPIMGGFEATGKIREWEKENGLQR 1179
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
PI+ALTAHAM D +KCL M+ YL KP+ +M+ TIL+
Sbjct: 1180 TPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQTILK 1221
>gi|392867974|gb|EAS33695.2| DRK1 histidine kinase [Coccidioides immitis RS]
Length = 1286
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 32/289 (11%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 699 LRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 758
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 759 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 818
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L SK+T E
Sbjct: 819 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------KLTISKSTRELC-- 869
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+D + A F V DTG GI++ K + +F++F+Q D ST
Sbjct: 870 -----------------------QDEEYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGST 906
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ + + +S
Sbjct: 907 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEFGHGSTFHFTCKVNLADQS 955
Score = 116 bits (291), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 90/162 (55%), Gaps = 31/162 (19%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R P ++ N+ S ILLAED + Q VA KILEK V+VV +GL AVEA+
Sbjct: 1091 RSTPLTTDNTRS--------FDILLAEDNDVNQKVAVKILEKCNHGVTVVSNGLAAVEAV 1142
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ R+D+ILMD QMP M G+EAT +IR+ E E+G +
Sbjct: 1143 KQH-----------------------RYDVILMDVQMPIMGGFEATGKIREWEKENGLQR 1179
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091
PI+ALTAHAM D +KCL M+ YL KP+ +M+ TIL+
Sbjct: 1180 TPIIALTAHAMLGDREKCLQAQMDEYLAKPLKQNQMMQTILK 1221
>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1860
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 141/267 (52%), Gaps = 23/267 (8%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS+FLA MSHE+RTPM A+IG+ +L D L +Q V I+ S LL ++N ILD
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLL-DTPLNADQREFVETIRTSGDGLLTIINDILDF 1213
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+ESGKM+LE F+L+ +EE +D+ + + + +E L+ P + GD R+ Q
Sbjct: 1214 SKIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQ 1273
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I NL++N++KFT G I+ F D +FG T
Sbjct: 1274 ILVNLLSNAVKFTQEGETIV----------AVNGTFVQD-AQFGNPMATA---------- 1312
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
E + F V DTG GI + + +F+SF Q D STTRK+GGTGLGL+I + L M
Sbjct: 1313 -TEGGVYQIHFSVKDTGVGIPPDRMDRLFKSFSQVDSSTTRKYGGTGLGLAIAKRLSELM 1371
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSE 689
GG + V + G+ + A+SE
Sbjct: 1372 GGTMWVESQVGVGSTFHFTIQATATSE 1398
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 38/186 (20%)
Query: 913 DLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEG---LRILLAEDTPLIQIVACKIL 969
D++ +F R S+R+D S Q L+ L+ILLAED + Q VA +IL
Sbjct: 1528 DILIGIFSRR----SNRKDSRVHRVPSFPKQSIPLKSDRPLKILLAEDNVVNQKVALRIL 1583
Query: 970 EKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029
E++G V +GL+A+ ALNR +D+ILMD QMP+M
Sbjct: 1584 ERMGYRADVASNGLEAIAALNRQ-----------------------SYDVILMDVQMPEM 1620
Query: 1030 DGYEATIEIRKSESEHGARNIP------IVALTAHAMNADEKKCLGVGMNAYLTKPIDSE 1083
DG EAT I K + R+I I+A+TA+AM D + CL GM+ Y++KPI E
Sbjct: 1621 DGLEATRHICKEWTLR--RDISPMGRPWIIAMTANAMQGDREICLQAGMDNYISKPIRME 1678
Query: 1084 RMVSTI 1089
+ +
Sbjct: 1679 ALAQAL 1684
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
ET DT RFDL ++D QMP+MDG IR+ G +P++ LT+ ++ G
Sbjct: 1455 ETADT-RFDLAILDMQMPEMDGLALAAAIRQLP---GGDRLPLIMLTSLGWQPVSREAAG 1510
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
+ A+L+KPI ++ ++
Sbjct: 1511 IDFAAFLSKPIKQSQLFDILI 1531
>gi|428226980|ref|YP_007111077.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986881|gb|AFY68025.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1299
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 148/265 (55%), Gaps = 36/265 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR A KSQFLANMSHE+RTPM ++G+ +L+ D LT +Q V I S+
Sbjct: 599 AREAAFEHARLKSQFLANMSHEIRTPMNGVLGMAGLLRKTD-LTPKQQDFVQAICTSAEH 657
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+E+G+M+L+ +FDL LE +V++ S Q + +E + + +PR
Sbjct: 658 LLAIINDILDFSKLEAGEMQLDKLDFDLDDCLEMVVNLLSTQAAEKRLEIAILVDQAVPR 717
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GDPGR+ Q+ NL++N+IKFTS G +++R NL+ A +P
Sbjct: 718 QIQGDPGRLRQVLLNLMSNAIKFTSQGDVVLR---VNLE-----ATWP------------ 757
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
QQA L F V DTG GI + +F+SF Q D S TR GTGLG
Sbjct: 758 ---QQA------------VLRFSVTDTGIGISPEGQQRLFQSFSQVDASLTRPFEGTGLG 802
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + LV MGGEI V + G+
Sbjct: 803 LAISQQLVQLMGGEIGVESELGQGS 827
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 25/132 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+ILL ED P+ Q V LE+ G + +VV G +A+E L +
Sbjct: 1006 LKILLVEDHPINQQVILHQLEEFGYSPAVVSHGQEALEYLEK------------------ 1047
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
ET DLILMDCQMP +DGY T +R+ E + R + ++ALTAHAM D +KCL
Sbjct: 1048 ET-----CDLILMDCQMPVLDGYATTRLLREREGDQ--RRMVVIALTAHAMPTDREKCLA 1100
Query: 1070 VGMNAYLTKPID 1081
GM+ Y++KP+D
Sbjct: 1101 AGMDDYISKPVD 1112
>gi|326474208|gb|EGD98217.1| DRK1 histidine kinase [Trichophyton tonsurans CBS 112818]
Length = 1331
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 152/289 (52%), Gaps = 22/289 (7%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 706 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 765
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 766 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 825
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L+ K+ P D
Sbjct: 826 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------TLEIKKHVPPPPAD 878
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
G R D++ A F V DTG GI + K + +F++F+Q D ST
Sbjct: 879 ----GEPER-----------EVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGST 923
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 924 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFTCVVKKADQS 972
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 89/164 (54%), Gaps = 31/164 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R P +S +S S ILLAED + Q VA KILEK V+VV +GLQA+E +
Sbjct: 1108 RSTPLTSDDSRS--------FDILLAEDNDVNQKVAVKILEKCNHGVTVVGNGLQALETI 1159
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ RFD+ILMD QMP M G+EAT EIR E HG
Sbjct: 1160 KKR-----------------------RFDVILMDVQMPIMGGFEATGEIRAYEKRHGLTR 1196
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
PI+ALTAHAM D +KC+ M+ YL+KP+ +M+ TIL+ T
Sbjct: 1197 TPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQTQMMQTILKCT 1240
>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 700
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 158/289 (54%), Gaps = 46/289 (15%)
Query: 395 GVSKEMKLRAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ 453
G +K + R + + L +AR++AE++N KSQF+A MSHE+RTP+ A++GL+E L S
Sbjct: 300 GTAKNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLGLMESL-SLSG 358
Query: 454 LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQ 513
L ++Q + Q+ +S++ LL ++N ILDLS++ESG L N++ ++ + ++ + D S Q
Sbjct: 359 LDSKQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVADQLSPQ 418
Query: 514 CSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDT 571
+ NV+ ++ D+IP+ + GD R+ Q+ NLI N++KFTS G I+ R E ++
Sbjct: 419 ATKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGSVRIVARKIEETIEI 478
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
+ V DTG GI + E +F
Sbjct: 479 A------------------------------------------VIDTGIGIAKDAQENIF 496
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
F Q D S TR++GGTGLGL+I + L+ KM G+I + + G+ ++
Sbjct: 497 NPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKISLESELGTGSCFKI 545
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 26/171 (15%)
Query: 935 SSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLA 994
S N + ++ + L ILLAED+ Q+VA +LE+ G V++ +G +A+ L
Sbjct: 556 SCENDTQSKHKSNCSLNILLAEDSNTNQLVAKLMLERRGHKVAITNNGKEAINVL----- 610
Query: 995 AESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054
LQG +FDL+LMD MP +DG EAT ++RK E +IPIVA
Sbjct: 611 ---------LQGHN-------KFDLVLMDISMPVLDGLEATKQLRKREI-----SIPIVA 649
Query: 1055 LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATGTTR 1105
LTA+AM +D+K +GM+ +L KPI S + + + + ++T TT+
Sbjct: 650 LTANAMQSDQKIYHEIGMDGFLAKPICSNELDQLLEKYQELKEKQSTITTQ 700
>gi|149925352|ref|ZP_01913616.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
MED105]
gi|149825469|gb|EDM84677.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
MED105]
Length = 752
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 146/271 (53%), Gaps = 38/271 (14%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST-VCQIKKSSYA 471
+RK E+++ KSQFLANMSHE+RTP+ AI+G +L DQ+ + Q V Q++++S
Sbjct: 370 QRKRESASKEKSQFLANMSHEIRTPLNAILGFNSLLG--DQVRDPQSKEYVKQVREASEQ 427
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++ +L S++E+G +++E+ EFDL + + + +F+ + + ++ L++ P
Sbjct: 428 LLGMVEDVLSFSQIEAGSIKIESVEFDLHERVRRTLRLFTAKAQHKGLDLELEIDAMTPL 487
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GDP R Q+ SNL+NN+IKF+ SG + ++ + LDT G RT
Sbjct: 488 LVNGDPARYGQVLSNLLNNAIKFSDSGVVRVKVQADRLDTQ-------------GAVIRT 534
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
EV D G G D S++E + FEQ D + TR+ GG+GLG
Sbjct: 535 ----------------------EVHDQGIGFDVSEFERLTRPFEQADNTATRRFGGSGLG 572
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L+I + L MGGE+ V G++ L
Sbjct: 573 LAICKRLTELMGGELFVASVPQAGSVFGFTL 603
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 24/145 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G +IL+ ED L Q V +L K+ A V +V +G AVEA+ A+SS
Sbjct: 626 LLGKKILVVEDNKLNQHVIKALLSKMQADVLLVDNGQMAVEAVR----ADSS-------- 673
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
DL+LMD MP M+G +A I IR+ +PIVALTA A+ DEK
Sbjct: 674 ----------IDLVLMDIHMPVMNGIDAAIAIRQLPGP--VSRLPIVALTAGALQEDEKA 721
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
C+ GMN +L+KP+D ++ + R
Sbjct: 722 CMDAGMNEFLSKPVDVPKLRQVLAR 746
>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
Length = 1793
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 24/280 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ LT +Q I + LL+L+
Sbjct: 1325 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFAETIHGAGSDLLQLI 1384
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1385 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1444
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR A+ P +K
Sbjct: 1445 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGADVPV-----------AIK 1484
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1485 EQLLEAGSLRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1544
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
R + +GGEI + G+ LYL L S Q Y
Sbjct: 1545 SREIARLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGY 1584
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 25/143 (17%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
EG ++L+ +D +LE+ G +V +G + +E L +
Sbjct: 1669 FEGEKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQH-------------- 1714
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K
Sbjct: 1715 --------DDVTVVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREK 1763
Query: 1067 CLGVGMNAYLTKPIDSERMVSTI 1089
+ G + Y+TKP+D + ++ +
Sbjct: 1764 AIDSGASDYVTKPVDPDHLLGVM 1786
>gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 791
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 144/277 (51%), Gaps = 36/277 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AEA+N K FLANMSHE+RTP+ IIG E+L + L EQ + I S +
Sbjct: 396 AKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELL-LNSPLQEEQKEYLKNIFFSGKS 454
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N+ILD SK++SGK+E E+ +L ++ +D+F V ++ + + + N+P+
Sbjct: 455 LLELVNQILDFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAASKGIALHIQIDPNLPK 514
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V DP R+ QI SNLI N+IKFT G + +
Sbjct: 515 YVSLDPLRIRQILSNLIGNAIKFTHEGSV-----------------------------KV 545
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L+Q N + + + FEV DTG GID + +F+SF Q D S TRK+GG+GLG
Sbjct: 546 SLQQMERNG------DYVTISFEVSDTGIGIDMNVGSRLFDSFSQADTSITRKYGGSGLG 599
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASS 688
L+I L+ KM ++ + + G+ L L S
Sbjct: 600 LTITNELLLKMNSKLTIQSELGKGSQFSFPLTLEVKS 636
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077
DLI+MD QMP MDGY ATIEIR+ E+ + + PIVALTA A A + + GM+ +LT
Sbjct: 712 DLIIMDLQMPIMDGYTATIEIRRLET-NSNKKTPIVALTAGAFYAVKDSAMESGMDDFLT 770
Query: 1078 KPIDSERMVSTI---LRLTK 1094
KPI + + +T+ LRL +
Sbjct: 771 KPISASHLYATVEKWLRLGR 790
>gi|428311153|ref|YP_007122130.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252765|gb|AFZ18724.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1152
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 151/279 (54%), Gaps = 18/279 (6%)
Query: 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLL 476
E +N KS+FLANMSHELRTP+ AIIG ++L D L EQ + I++S LL L+
Sbjct: 638 ETANRAKSRFLANMSHELRTPLNAIIGFTQLLTRDSSLNPEQQEYLGIIQRSGEHLLELI 697
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N +L +SK+E G++ L FDL L+ L MF + N N++ V D + +P+ V+ D
Sbjct: 698 NNVLQMSKIEVGRVTLNKNNFDLYHLLDTLEAMFKLPVQNKNLQLVFDRTPTLPQYVQTD 757
Query: 537 PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQ 596
++ Q+ NL+ N+IKFT+ G + +R + S+ + P R L +
Sbjct: 758 ESKLRQVLINLLGNAIKFTTEGGVTLR--IASKFKSEESNNLPVKR----------LNVE 805
Query: 597 ANNAMNFREDNKL---ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH-GGTGLGL 652
+ ++++ KL L FEV+DTG GI + +++FE F Q T R+ GTGLGL
Sbjct: 806 GSQPSSYQQHLKLQPVTLYFEVEDTGFGIAPEEMDSLFEPFLQ--TQTGRQALEGTGLGL 863
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
I R V MGG+I+V G++ + + + E K
Sbjct: 864 PIARQFVQLMGGDIRVSSHLGKGSIFHFEIEVDIAQEPK 902
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+ +D +++ K+L VG V +G +A+E + S
Sbjct: 923 RILVVDDRLESRVLLVKLLASVGFEVLEAVNGQEAIELWS------------------SW 964
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P LI MD +MP MDGYEAT I+ ++ + IVALTA A + L
Sbjct: 965 EPH-----LIWMDMRMPVMDGYEATKRIK---ADLKGQATAIVALTASAFEEERSVVLSA 1016
Query: 1071 GMNAYLTKPI 1080
G + ++ KP
Sbjct: 1017 GCDDFVRKPF 1026
>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
Length = 869
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 144/270 (53%), Gaps = 35/270 (12%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+A +N KSQFLANMSHE+RTPM +IG+ ++L + L EQ I +S+ +LL+
Sbjct: 216 EARDANVAKSQFLANMSHEIRTPMNGVIGMADLLL-ETALDTEQRKYAQTIIRSARSLLK 274
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
++N ILD SK+E+ + ELE+++F+L L E+ + ++ +E + + IP ++
Sbjct: 275 IINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLI 334
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GD GR+ QI NL+ N++KFT G + + KL+
Sbjct: 335 GDSGRIRQILVNLLGNAVKFTPVGGEV--------------------------GVKLKLQ 368
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
Q+ D + + F V DTG GI + +++FE F Q D ST RK+GGTGLGLSI
Sbjct: 369 QET--------DRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGTGLGLSI 420
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
L +MGG I V G++ ++L
Sbjct: 421 SNHLATRMGGRINVESHPGEGSVFSFNIVL 450
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 37/200 (18%)
Query: 898 EFSSICPG-----ESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSS--NQKRILEGL 950
EFS IC G E +R++L + ++ +R C S+ S GL
Sbjct: 557 EFSEICGGNCLFLEKPVQRDELFLMLSDTIERMPPAR----CESAEPQSLLPATAPTAGL 612
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+L+ ED+P+ Q VA +L K+G V G +A+E +
Sbjct: 613 VVLIVEDSPVNQQVAVAMLRKLGCEPDVASGGREALELMR-------------------- 652
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
T +D++ MDCQMP+MDGYEAT IR +RN+P+VA+TA+ M D ++C+
Sbjct: 653 ---TTAYDMVFMDCQMPEMDGYEATGRIRSGSGMKSSRNVPVVAMTANVMKGDRERCIAS 709
Query: 1071 GMNAYLTKPI---DSERMVS 1087
GM+ Y+ KP+ D R++S
Sbjct: 710 GMDDYIAKPLQKSDFRRVLS 729
>gi|326477630|gb|EGE01640.1| two-component osmosensing histidine kinase [Trichophyton equinum
CBS 127.97]
Length = 1321
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 152/289 (52%), Gaps = 22/289 (7%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
LR + + AR AE +N KS+FLANMSHE+RTPM IIG+ ++ D L
Sbjct: 706 LRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYPREM 765
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
+ + + +LL +++ ILD+SK+E+ +M +E+ F ++ + + +V+ + +
Sbjct: 766 LNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKANEKFLNL 825
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ ++P V GDP R+ QI NL+ N+IKFT G + L+ K+ P D
Sbjct: 826 TYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEV-------TLEIKKHVPPPPAD 878
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
G R D++ A F V DTG GI + K + +F++F+Q D ST
Sbjct: 879 ----GEPER-----------EVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGST 923
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
TRK GGTGLGLSI + LVN MGG++ V + G+ ++ + +S
Sbjct: 924 TRKFGGTGLGLSISKRLVNLMGGDVWVTSEYGRGSTFHFTCVVKKADQS 972
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 89/164 (54%), Gaps = 31/164 (18%)
Query: 930 RDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989
R P +S +S S ILLAED + Q VA KILEK V+VV +GLQA+E +
Sbjct: 1108 RSTPLTSDDSRS--------FDILLAEDNDVNQKVAVKILEKCNHGVTVVGNGLQALETI 1159
Query: 990 NRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN 1049
+ RFD+ILMD QMP M G+EAT EIR E HG
Sbjct: 1160 KKR-----------------------RFDVILMDVQMPIMGGFEATGEIRAYEKRHGLTR 1196
Query: 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093
PI+ALTAHAM D +KC+ M+ YL+KP+ +M+ TIL+ T
Sbjct: 1197 TPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQTQMMQTILKCT 1240
>gi|428213852|ref|YP_007086996.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002233|gb|AFY83076.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1828
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 24/270 (8%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS+FLANMSHELRTP+ AI+G +++ D L E + + I ++ LL L+N +L++
Sbjct: 1349 KSEFLANMSHELRTPLNAILGFTQVMARDASLKPENHEHLKIINRAGGHLLALINDVLEM 1408
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+G+M + FDL L+ L +MF ++ + ++ + + D +P+ V+ D ++ Q
Sbjct: 1409 SKIEAGRMSFNSVNFDLLNLLKSLNEMFQIKAESKQLQIIFEGWDELPQFVKTDESKLRQ 1468
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
+ N++ N+IKFT +GH+I+R E D P D G N
Sbjct: 1469 VLINIVGNAIKFTETGHVILR--IEVTDAPTGVNPDPGDFSDSG------------NPGK 1514
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRK-HGGTGLGLSIVRTLVNK 661
F L FE++DTG GI + +FE F G T RK GTGLGL I R V
Sbjct: 1515 F-------LYFEIEDTGPGIAPEEMGKLFEPF--GQTETGRKSQQGTGLGLPISRKFVQL 1565
Query: 662 MGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
MGG+I+V GT+ + + SSE +
Sbjct: 1566 MGGDIQVTSIVGQGTVFAFAVAIAPSSEGE 1595
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LILMD QMP MDGYEAT I+ + + IVALTA A + K L G + ++ K
Sbjct: 1663 LILMDMQMPVMDGYEATRHIKSTAQ---GQKTTIVALTASAFEEERKMILDAGCDDFIRK 1719
Query: 1079 PIDSERMVSTILR 1091
P E ++ TI R
Sbjct: 1720 PFLEELLLETIGR 1732
>gi|375006596|ref|YP_004975380.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357427854|emb|CBS90802.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1159
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 139/265 (52%), Gaps = 34/265 (12%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+ +N K +FLA MSHE+RTPM ++G L ++ + L EQ + +S A
Sbjct: 577 AKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVDGPN-LDEEQRQLLDVANRSGKA 635
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL++++ ILDLSK+E+GK E+E +F+L+ + + +D+ + +++ +P
Sbjct: 636 LLQIIDDILDLSKLEAGKAEVEPVDFELRAVMRDCIDLLEPTAGGRGLILTREVAPAVPD 695
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
VR D R+ Q+ NL+ N++KFT ++ G A R
Sbjct: 696 RVRADLRRIRQVLVNLVGNALKFT---------------------------QRRGVAVRV 728
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
L+ +A +F L F+V DTG GI + T+F F QGD STTR+ GGTGLG
Sbjct: 729 GLEGEAVPGHSF------FLRFDVADTGIGIPEDVQPTLFRRFTQGDSSTTRRFGGTGLG 782
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I R LV MGG I VV G+
Sbjct: 783 LAISRELVTLMGGRIGVVSAEGKGS 807
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LR+L+AED + + + +L + G V+ V DGLQAV +
Sbjct: 856 LRVLVAEDNEINRDIVVTMLRRGGHRVTAVEDGLQAVRLV-------------------- 895
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ RFDL+LMD QMP MDG AT IR A +PIVALT + M + L
Sbjct: 896 ---EEDRFDLVLMDVQMPVMDGVTATRHIRAMPGP--ASRLPIVALTGNVMPGHRAEYLA 950
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKNMPSEATGT 1103
GM AYLTKPI S + IL +E +GT
Sbjct: 951 AGMTAYLTKPIVSADLFE-ILSSVSASRTEPSGT 983
>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 935
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 180/352 (51%), Gaps = 36/352 (10%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LRA + R+AEA++ KS+FLANMSHE+RTPM A+IG ++L S+ +Q
Sbjct: 560 EDELRAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLL-SNTVKDPQQ 618
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ + I+ S +LL L+N ILDLS++E+GKM LE + +++ L ++ +F ++ +
Sbjct: 619 RNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQG 678
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ + + +P + D R+ Q+ NL+ N+IKFT G + +R +S+
Sbjct: 679 ISLEVSVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRATATPRKSSEKQPVE 738
Query: 579 PT----DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
T DR+ F R L V DTG GI + E +F++F
Sbjct: 739 ETASEVDRRCFYR-----------------------LVVTVSDTGIGIPPDQQEQIFDAF 775
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
EQ + TR++GGTGLGL+I R LV MGGE++V + G+ + L ++ ++
Sbjct: 776 EQQEGQNTRRYGGTGLGLAISRKLVRMMGGELQVESEPGAGSTFTVKLPRVEATGAQAEE 835
Query: 695 DADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDP 746
D + +LA SM+ WL+++ EW + +RE DP
Sbjct: 836 DGTPEESERLLAQTLSMQE---RGWLQEQLARDF-GDEW----ETVRESGDP 879
>gi|428307122|ref|YP_007143947.1| PAS sensor protein [Crinalium epipsammum PCC 9333]
gi|428248657|gb|AFZ14437.1| PAS sensor protein [Crinalium epipsammum PCC 9333]
Length = 2407
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 151/265 (56%), Gaps = 26/265 (9%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +A A+ KS+FLA MSHE+RTPM A+IG+ +L D LT EQ I+ S
Sbjct: 1811 ARDQALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL-DTNLTAEQRKFAEIIRNSGEL 1869
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD SK+ESGK++LE FDLQ+ + +D+ ++ N N++ L P
Sbjct: 1870 LLTLINDILDFSKIESGKLQLELQPFDLQQVITSSLDLLALNALNKNLKLTYLLDPQTPT 1929
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++GD R+ QI NL++N++KFT G +I+ ++ K AE
Sbjct: 1930 TIKGDSTRLRQILVNLLSNAVKFTDKGEVIV-----SVTAQKLVAE-------------- 1970
Query: 592 KLKQQANNAMNFREDNKLALC---FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
+ NN++++ + L F V DTG GI +++ E +F+SF Q D ST+R++GGT
Sbjct: 1971 ---ESLNNSISYTPTSDSGLYKIQFAVKDTGIGIPENRMERLFKSFMQVDSSTSRQYGGT 2027
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNS 673
GLGL+I + L MGG+I V N+
Sbjct: 2028 GLGLAISKHLSEMMGGQIWVESGNA 2052
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 27/143 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRIL+AED + Q VA +L+ +G +V +GL+ +EAL+ SR
Sbjct: 2138 LRILVAEDNRVNQDVALHLLQAIGYRADIVNNGLEVLEALH-------SRP--------- 2181
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMP+MDG AT +I SE + ++P I+A+TA+AM D+++CL
Sbjct: 2182 -------YDVVLMDVQMPEMDGLSATQQIC---SEWDSESLPWIIAMTANAMQGDKEECL 2231
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
GMN Y++KPI E ++ + R
Sbjct: 2232 AAGMNDYISKPIRIEELIQALSR 2254
>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
Length = 1829
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 153/290 (52%), Gaps = 32/290 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1362 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLI 1421
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKV++GKM++ T L +LVD + E LDLS +P
Sbjct: 1422 NDILDLSKVDAGKMDVSPTRI----ALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPAT 1477
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG + +IR + E PT
Sbjct: 1478 MHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARD---------EVPT---------- 1518
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++Q A + + + + F V DTG GI SK + +FE+F+Q D +T+RK+GGTGL
Sbjct: 1519 -AIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGL 1577
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GLSI R + +GGEI + G+ LYL L S Y P+
Sbjct: 1578 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPHGYQQPLPS 1627
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 918 MFRERHQIGSS-------RRDQPCSSSNSSSNQKRILE--GLRILLAEDTPLIQIVACKI 968
+FR R + + R QP + + R + G ++L+ +D +
Sbjct: 1667 LFRRRRKSSADTEGRPEVRERQPGAGQEAVPQAHRGIRFGGQKVLIVDDDIRNVFALTSV 1726
Query: 969 LEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028
LE+ G +V +G + +E L + ++LMD MP+
Sbjct: 1727 LEQHGLSVLYAENGREGIEVLEQH----------------------EDVAVVLMDIMMPE 1764
Query: 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST 1088
MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TKP+D + +++
Sbjct: 1765 MDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTV 1821
Query: 1089 I 1089
+
Sbjct: 1822 M 1822
>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
Length = 1285
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 153/292 (52%), Gaps = 40/292 (13%)
Query: 403 RAELISHL-DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+AEL+ L A+ A+A+N KS+FLANMSHELRTP+ AI+G ++L D L+++Q+
Sbjct: 800 QAELLEQLTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLLARDSSLSDKQHEY 859
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
V I +S LL LLN +L++SK+E+G++ L FDL + L L +MF ++ + ++
Sbjct: 860 VGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEEMFQLKAQSKGLQL 919
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ D ++P+ ++ D ++ QI NLI N IKFT G +I+R L T
Sbjct: 920 IFDCHPDVPQYIKTDESKLRQILINLIGNGIKFTEVGSVILRVKLSLLST---------- 969
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
+ + FEV+DTG GI + +T+F+ F Q S
Sbjct: 970 ---------------------------MTIDFEVEDTGLGIAPEELDTLFQPFIQT-VSG 1001
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQI 693
+ GTGLGL I + V MGG I V + G++ + + SES Q+
Sbjct: 1002 RKSQEGTGLGLPISQKFVQLMGGNISVKSNLNKGSMFRFEIPF-TQSESAQV 1052
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 24/140 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
RIL+A+D +++ +L +G V +GLQ VE S
Sbjct: 1072 RILIADDKWESRLMLVNLLSPLGFEVREAENGLQTVELWQ------------------SW 1113
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPIVALTAHAMNADEKKCLG 1069
+P LI MD +MP +DGY+AT +IR+ ES + I+ALTA ++
Sbjct: 1114 SPH-----LIWMDMRMPLIDGYQATKQIREKESMTSTQQRTKIIALTASVLDTQRMTVFN 1168
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
G + ++ KP+ E++ I
Sbjct: 1169 AGCDDFVAKPVRKEKVFEKI 1188
>gi|440684403|ref|YP_007159198.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428681522|gb|AFZ60288.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1382
Score = 158 bits (400), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 148/258 (57%), Gaps = 27/258 (10%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ +AE +N K +FLA MSHE+RTPM A+IG+ +L D QLT +Q I+ S A
Sbjct: 714 AKEEAEIANLTKGEFLATMSHEIRTPMNAVIGMTGLL-LDTQLTPQQLEFAEIIRNSGDA 772
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
+L L+N ILD SK+ESGK+E+E F+L+ LEE +D+ + + S +E +
Sbjct: 773 MLTLINDILDFSKIESGKLEIEEQIFNLRTCLEESLDLVAPKASEKGLELAYLMYPETYE 832
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL++N+IKFT+SG +I+ + +
Sbjct: 833 VISGDVTRLRQILVNLLSNAIKFTNSGEVIL-------------------------SVTS 867
Query: 592 KLKQQANNAMNFREDNKL-ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
++K Q+++ +++++L + F V DTG GI + K +F+ F Q D STTR +GGTGL
Sbjct: 868 QIKDQSDSEFISQQNSQLYEIKFTVKDTGIGIPEDKMHRLFKPFSQVDASTTRHYGGTGL 927
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL I + L MGG++ V
Sbjct: 928 GLVISKRLTELMGGKMWV 945
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 76/141 (53%), Gaps = 27/141 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L+IL+AED + Q VA IL+++G V +GL+ + AL RR+S
Sbjct: 1130 LKILVAEDNVVNQKVAINILQRLGYRADVAANGLEVLVAL---------RRQS------- 1173
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCL 1068
+D++LMD QMP+MDG AT +I K E P I+A+TA+AM D +KCL
Sbjct: 1174 -------YDVVLMDLQMPEMDGLTATRQIYK---EWPLSKRPWIIAMTANAMQGDREKCL 1223
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
GMN Y TKPI E + +
Sbjct: 1224 AAGMNDYTTKPIRIEELTKAL 1244
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA--HAMNADEKKCLGVGMN 1073
+FD+ ++D QMP+MDG EIRK + +P+V LT+ + + L +
Sbjct: 1025 QFDIAILDMQMPEMDGLTLASEIRKL---NNCERLPLVMLTSIGDGQSNTNYQNLNLEFV 1081
Query: 1074 AYLTKPIDSERMVSTILRLTKN---MPSEAT 1101
AYLTKPI +++ ++ ++KN MP E T
Sbjct: 1082 AYLTKPIKKANLLNILINISKNNVVMPKENT 1112
>gi|386842918|ref|YP_006247976.1| two-component system sensor kinase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103219|gb|AEY92103.1| two-component system sensor kinase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796210|gb|AGF66259.1| two-component system sensor kinase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 1791
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 149/289 (51%), Gaps = 32/289 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ L+ +Q I + LL+L+
Sbjct: 1325 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLI 1384
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKVE+GKM++ T L +LVD E LDLS +P
Sbjct: 1385 NDILDLSKVEAGKMDVSPTRI----ALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPAT 1440
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG + +IR G +
Sbjct: 1441 LHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIR--------------------PAGASVP 1480
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++Q A + R+ + F V DTG GI SK +FE+F+Q D +T+RK+GGTGL
Sbjct: 1481 QSIREQLLEAGSLRDPGGELIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGL 1540
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
GLSI R + +GGEI + G+ LYL L S Q Y P
Sbjct: 1541 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGYQQSVP 1589
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1717 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTK 1773
Query: 1079 PIDSERMVSTI 1089
P+D + ++S +
Sbjct: 1774 PVDPDHLLSVM 1784
>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
Length = 1829
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 153/290 (52%), Gaps = 32/290 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1362 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLI 1421
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKV++GKM++ T L +LVD + E LDLS +P
Sbjct: 1422 NDILDLSKVDAGKMDVSPTRI----ALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPAT 1477
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG + +IR + E PT
Sbjct: 1478 MHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARD---------EVPT---------- 1518
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++Q A + + + + F V DTG GI SK + +FE+F+Q D +T+RK+GGTGL
Sbjct: 1519 -AIREQLLEAGSMNDPDAELIAFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGL 1577
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GLSI R + +GGEI + G+ LYL L S Y P+
Sbjct: 1578 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPHGYQQPLPS 1627
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 918 MFRERHQIGSS-------RRDQPCSSSNSSSNQKRILE--GLRILLAEDTPLIQIVACKI 968
+FR R + + R QP + + R + G ++L+ +D +
Sbjct: 1667 LFRRRRKSSADTEGRPEVRERQPGAGQEAVPQAHRGIRFGGQKVLIVDDDIRNVFALTSV 1726
Query: 969 LEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028
LE+ G +V +G + +E L + ++LMD MP+
Sbjct: 1727 LEQHGLSVLYAENGREGIEVLEQH----------------------EDVAVVLMDIMMPE 1764
Query: 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST 1088
MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TKP+D + +++
Sbjct: 1765 MDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTV 1821
Query: 1089 I 1089
+
Sbjct: 1822 M 1822
>gi|428310651|ref|YP_007121628.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252263|gb|AFZ18222.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1449
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 138/257 (53%), Gaps = 21/257 (8%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A++ AE +N KS+FLA MSHE+RTPM IIG+ +L + LT +Q I SS A
Sbjct: 819 AKQAAEVANQAKSEFLAMMSHEIRTPMNGIIGMNNLLL-NTSLTEQQQEFARTIGSSSEA 877
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LLR++N ILDLSK+ESGK+E E+ FDL +E V++ + + + +E + P
Sbjct: 878 LLRIINDILDLSKIESGKLEWEDQPFDLLSCIEAAVNLLTPKAVDQRLELTYQMDAQTPL 937
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ GD R+ QI NL++N++KFT +G + + L S+ + F R +
Sbjct: 938 TLVGDVTRLHQILLNLLSNAVKFTDAGQVKVSVTAHALGNSEPSNLVLNPHSPFPRLYEI 997
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ F V DTG GI + +F+ F Q D ST+R++GGTGLG
Sbjct: 998 Q--------------------FAVQDTGIGISPEQMNRLFKPFSQVDASTSRRYGGTGLG 1037
Query: 652 LSIVRTLVNKMGGEIKV 668
L+I + L MGG + V
Sbjct: 1038 LAISQRLCELMGGRMWV 1054
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 45/162 (27%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + Q VA L+++G VV +G + +EAL R
Sbjct: 1140 LRILLAEDNRVNQQVALLTLKQLGYQADVVNNGREVLEALRRQ----------------- 1182
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSES-----EHGARNIPI------------ 1052
+D++LMD +MP+MDG AT I + + ++ + PI
Sbjct: 1183 ------PYDVVLMDVEMPQMDGLTATRLICQEWNADLILKNAGKESPITQSDAVTTYLQS 1236
Query: 1053 -----VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+A+TA+AM D +KCL GM+ Y++KPI + ++ +
Sbjct: 1237 QRPRIIAMTAYAMAGDRQKCLEAGMDDYISKPIQEQELIRAL 1278
>gi|392549462|ref|ZP_10296599.1| GGDEF domain protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1378
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 154/283 (54%), Gaps = 35/283 (12%)
Query: 398 KEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE 457
K L+++ + A +KAE + KS+FLANMSHE+RTPM ++G+LE+LK +LT E
Sbjct: 834 KTASLKSQAMELEAALKKAEQATRLKSEFLANMSHEIRTPMNGVLGMLELLKHS-ELTPE 892
Query: 458 QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNH 517
Q +V S+++LL L+N ILD SK+E+ K+ELE +FD+++ E+L + ++
Sbjct: 893 QEHSVGIASSSAHSLLSLINDILDFSKIEADKLELEFIDFDVRQLFEQLAESMALGAQTK 952
Query: 518 NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577
V V+DL+ + DPGR+ QI +N+++N+IKFT G I++
Sbjct: 953 GVGLVVDLTGVQTAMINSDPGRIRQIAANILSNAIKFTEQGEIVMSA------------- 999
Query: 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
+ + D+K L + DTG GI + ++F+SF Q
Sbjct: 1000 ---------------------SLTHSISDDKTMLTCRIQDTGIGIPEEMLSSLFDSFIQV 1038
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
D STTRK+GGTGLGLSI + L +GG++ V G+ +
Sbjct: 1039 DASTTRKYGGTGLGLSITKRLCQLLGGDVSVSSTVGHGSCFEF 1081
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 20/139 (14%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+LL ED + Q+VA +ILE +G T+ + +GL+A++ L
Sbjct: 1250 HVLLVEDNKVNQLVATRILEHLGVTIDIAENGLEALDKL--------------------R 1289
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+T + L+LMDCQMPKMDGYEAT IR +++ + +IPI+A+TA+AM D +KCL
Sbjct: 1290 NTETQAYTLLLMDCQMPKMDGYEATRRIRSAQAGNHYTDIPIIAMTANAMQGDRQKCLDA 1349
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ Y+TKPI+S ++ +
Sbjct: 1350 GMDDYITKPIESAKVTEKL 1368
>gi|261252516|ref|ZP_05945089.1| sensor histidine kinase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417952699|ref|ZP_12595757.1| GacS/BarA family sensor protein [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260935907|gb|EEX91896.1| sensor histidine kinase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342818925|gb|EGU53776.1| GacS/BarA family sensor protein [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 810
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 144/274 (52%), Gaps = 41/274 (14%)
Query: 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSY 470
+ + KA+AS KS FLA +SHE+RTPM ++G +IL D LT+EQ + + +S
Sbjct: 341 EEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTD-LTSEQRKHMKTLYESGE 399
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
++ LLN ILD SKVE G +ELE F L+ + + ++ CS ++ + +P
Sbjct: 400 HMMTLLNEILDFSKVEQGHLELERAPFPLEAIIGSINSVYYTLCSEKGLQ--FKVYSEVP 457
Query: 531 --RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
R R D R+ QI NL+NN++KFTS G++
Sbjct: 458 ESRWYRCDKARLRQILFNLLNNAVKFTSRGYV---------------------------- 489
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
K+Q N NF L +V DTG GID++ + VF+ FEQ + STTR+ GGT
Sbjct: 490 -EVGFKEQTRNGRNF-------LVIQVRDTGIGIDKAVQDKVFKPFEQAESSTTRRFGGT 541
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
GLGL+IV+ L + M GEIK+ + G+ ++ L
Sbjct: 542 GLGLAIVKQLCDLMDGEIKLTSEVGIGSCFEVAL 575
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
GL+ L+ ED I+ + G + V +G AV A+
Sbjct: 597 GLKALIVEDNRTNSIILNTFMTNKGFSCDCVENGELAVHAIT------------------ 638
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
T +DL+LMD MP MDG EAT IR + + I+ TA ++ +
Sbjct: 639 -----TGEYDLVLMDNHMPVMDGIEATAVIRGLSGQKS--KVLILGCTADVFKDTWQRMI 691
Query: 1069 GVGMNAYLTKPIDSERMVSTIL 1090
G N ++KP+D + +L
Sbjct: 692 ASGANYIISKPVDETELDDALL 713
>gi|443475947|ref|ZP_21065876.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019143|gb|ELS33280.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1390
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 143/257 (55%), Gaps = 23/257 (8%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ AE + KS FLA+MSHE+RTPM +IG+ EIL++ QLT EQ V IK S +
Sbjct: 970 AKSAAEEATRAKSAFLASMSHEIRTPMNGVIGMTEILEAT-QLTIEQKDYVKTIKDSGES 1028
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESG M +E EF +++ + ++ +F Q ++ + ++ ++P+
Sbjct: 1029 LLAIINDILDFSKIESGMMTIEENEFVIEEVVRDVCKLFKNQTTDKQISLQHTIALDVPK 1088
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V GD R+ Q+ NL+ N+IKFT G + +L S P
Sbjct: 1089 IVIGDRARLRQVLLNLVGNAIKFTHQGQV-------SLSISGRLLSKP------------ 1129
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
QQ ++ + + K L + DTG GI ++ +++F+ F Q D S RK+GGTGLG
Sbjct: 1130 ---QQGSHRELAKHELKYELLVAIADTGIGIARNHLDSLFQPFTQADTSIGRKYGGTGLG 1186
Query: 652 LSIVRTLVNKMGGEIKV 668
L+I + LV MGG I V
Sbjct: 1187 LAISKLLVELMGGTIWV 1203
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVP-DGLQAVEALNRMLAAESSRRRSLLQGSP 1008
LRILL ED + Q VA + ++G + + DGLQA++ L
Sbjct: 1264 LRILLVEDNSVNQRVATLMFRRLGYQIEAIANDGLQAIQFLQ------------------ 1305
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
FDL+LMD QMP+MDG AT IR + IVA+TA M D + C
Sbjct: 1306 -----NHEFDLVLMDIQMPEMDGITATKLIRTDLKSQ----VRIVAMTADVMPEDRQACF 1356
Query: 1069 GVGMNAYLTKPIDSE---RMVSTILRLTKNMPS 1098
GM+ Y++KPID + R+VS++L + PS
Sbjct: 1357 DAGMDDYVSKPIDIQDVIRIVSSVLDGQREAPS 1389
>gi|345888476|ref|ZP_08839559.1| hypothetical protein HMPREF0178_02333 [Bilophila sp. 4_1_30]
gi|345040645|gb|EGW44882.1| hypothetical protein HMPREF0178_02333 [Bilophila sp. 4_1_30]
Length = 670
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 144/264 (54%), Gaps = 38/264 (14%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N KS FLANMSHELRTPM AIIGL + LK+D LT +QY + +I +SS ALL +LN
Sbjct: 281 NRAKSSFLANMSHELRTPMNAIIGLSYLALKTD--LTTQQYEYISRISESSTALLGILND 338
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILDL+KVE+ K+EL T F+L+KEL L + + +E L+++ ++P + GD
Sbjct: 339 ILDLTKVEANKLELARTPFNLKKELGILAAVVLPEAEGKGLEFSLEIAPDVPLLLMGDAL 398
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
RV Q+ NL NN++KFT G + + R ++ N
Sbjct: 399 RVRQVLLNLCNNAVKFTDEGSV---------------------------SLRVRVVDSTN 431
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
++ L F V D G GI +S+ +F F Q D S TR+ GGTGLGL+I + L
Sbjct: 432 --------TRVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRL 483
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYL 682
V MGG + V + + G+ ++ L
Sbjct: 484 VELMGGTLTVGSRVNKGSTFRVEL 507
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ ED L Q V +L + G V +G AV+
Sbjct: 539 LVGQRVLVVEDNELNQYVILNMLARFGVETCVAENGRDAVDRY----------------- 581
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+E D FD+ILMD QMP M+GY+AT IR+S R++PI+A+TAHAM DE++
Sbjct: 582 --AEDQD---FDVILMDVQMPVMNGYDATRRIRESGLPR-CRSVPILAMTAHAMRGDEER 635
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GMNA+LTKPID +V ++ R
Sbjct: 636 SFAAGMNAHLTKPIDVRELVFSLSR 660
>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
Length = 670
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 144/264 (54%), Gaps = 38/264 (14%)
Query: 420 NNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
N KS FLANMSHELRTPM AIIGL + LK+D LT +QY + +I +SS ALL +LN
Sbjct: 281 NRAKSSFLANMSHELRTPMNAIIGLSYLALKTD--LTTQQYEYISRISESSTALLGILND 338
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILDL+KVE+ K+EL T F+L+KEL L + + +E L+++ ++P + GD
Sbjct: 339 ILDLTKVEANKLELARTPFNLKKELGILAAVVLPEAEGKGLEFSLEIAPDVPLLLMGDAL 398
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
RV Q+ NL NN++KFT G + + R ++ N
Sbjct: 399 RVRQVLLNLCNNAVKFTDEGSV---------------------------SLRVRVVDSTN 431
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
++ L F V D G GI +S+ +F F Q D S TR+ GGTGLGL+I + L
Sbjct: 432 --------TRVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRL 483
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYL 682
V MGG + V + + G+ ++ L
Sbjct: 484 VELMGGTLTVGSRVNKGSTFRVEL 507
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ ED L Q V +L + G V +G AV+
Sbjct: 539 LVGQRVLVVEDNELNQYVILNMLARFGVETCVAENGRDAVDRY----------------- 581
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
+E D FD+ILMD QMP M+GY+AT IR+S R++PI+A+TAHAM DE++
Sbjct: 582 --AEDQD---FDVILMDVQMPVMNGYDATRRIRESGLPR-CRSVPILAMTAHAMRGDEER 635
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILR 1091
GMNA+LTKPID +V ++ R
Sbjct: 636 SFAAGMNAHLTKPIDVRELVFSLSR 660
>gi|358449868|ref|ZP_09160345.1| histidine kinase [Marinobacter manganoxydans MnI7-9]
gi|357225917|gb|EHJ04405.1| histidine kinase [Marinobacter manganoxydans MnI7-9]
Length = 933
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 182/349 (52%), Gaps = 32/349 (9%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LRA + R+AEA++ KS+FLANMSHE+RTPM A+IG ++L S+ +Q
Sbjct: 560 EDELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLL-SNSVTDPQQ 618
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ + I+ S +LL L+N ILDLS++E+GKM L+ + +++ L+++ +F ++
Sbjct: 619 RNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQG 678
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ + + +P + D R+ Q+ NL+ N+IKFT G + +R + L K +AE
Sbjct: 679 ITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTVRATAKPL--KKRSAEA 736
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ + R + L V D+G GI + E +F++FEQ +
Sbjct: 737 EQNPEAPERQY-------------------YKLIVTVSDSGIGIPPDQVERIFDAFEQQE 777
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
TR++GGTGLGL+I R L MGGE++V + G++ + L + +Q D
Sbjct: 778 GQNTRRYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTVTLPR-VEATVEQAEDEGV 836
Query: 699 PN-TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDP 746
P + +LA SM+ WLR++ + EW + +RE DP
Sbjct: 837 PKESDRLLAQTLSMQE---RGWLREQLAADF-GDEW----EAVRESGDP 877
>gi|358635242|dbj|BAL22539.1| periplasmic sensor hybrid histidine kinase [Azoarcus sp. KH32C]
Length = 1468
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 148/281 (52%), Gaps = 39/281 (13%)
Query: 396 VSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQL 454
+ + +L+A L A+ AE + +S+FLANMSHE+RTPM AI+G+L + LKS +L
Sbjct: 698 IERTAQLKAANKELLKAKDIAEDAKRAQSEFLANMSHEIRTPMNAILGMLYLALKS--EL 755
Query: 455 TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514
T Q++ + + + ++++LL ++N ILD+SK+E+GK+++E EF L LE+L D
Sbjct: 756 TPSQHNYLAKAQGAAHSLLGIINDILDISKIEAGKLDIEQVEFGLDTVLEQLTDAVGYLA 815
Query: 515 SNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574
+ VE ++ IP + GDP R+ QI NL N++KFT G + + C
Sbjct: 816 EDKGVEFLVRYDPAIPSRLVGDPLRLGQILLNLCGNAVKFTERGEVELSFRC-------- 867
Query: 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESF 634
++ E + L F V DTG G+ +FE F
Sbjct: 868 --------------------------IDAGETDILLQVF-VRDTGIGMTAEVQRKLFEKF 900
Query: 635 EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
Q D STTR+ GGTGLGL+I R L MGG I V + PG
Sbjct: 901 TQADQSTTRRFGGTGLGLAISRNLAELMGGNIW-VDDSQPG 940
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+LL ED + + A ++L G V G +AV+ +
Sbjct: 1119 LAGARVLLVEDNDINREFATELLRSEGIEVDEARTGAEAVDRVQ---------------- 1162
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR---NIPIVALTAHAMNAD 1063
T +D +LMD QMP MDG EA IR G +PIVA+TA AM D
Sbjct: 1163 -------TGDYDAVLMDIQMPVMDGLEAARRIRALAGLPGCEAFARLPIVAMTALAMTRD 1215
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097
+K GMN ++TKPI ER+++T+ + + P
Sbjct: 1216 AEKSQAAGMNDHVTKPIAPERLMATLAKWVQVPP 1249
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP----IVALTAHAMNADEKKCLGVGM 1072
+DL+LMD +MP M+G EAT I + + IP +V +TA+ + G+
Sbjct: 1022 YDLVLMDWRMPGMNGDEATALIHRDGA------IPHHPKVVMVTAYGREDVFRFAEQAGV 1075
Query: 1073 NAYLTKPIDSERMVSTIL 1090
+ +L KP+ ++ TIL
Sbjct: 1076 DGFLIKPVSPSVLLDTIL 1093
>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
Length = 1307
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 149/270 (55%), Gaps = 24/270 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L + + L+++Q I + LL+L+
Sbjct: 722 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSDLLQLI 781
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKME+ T L + ++ + F N++ + +S +P + D
Sbjct: 782 NDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTD 841
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG +IIR A+ P ++
Sbjct: 842 EQRLLQVLRNLLSNAVKFTGSGAVELIIR---------PAGADVPD-----------AIR 881
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + E + + F V DTG GI + K +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 882 EQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSI 941
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
R + +GGEI + G+ LYL L
Sbjct: 942 SREIARLLGGEIDAQSQPGRGSTFTLYLPL 971
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PIVALTA AM D +K + G + Y+TK
Sbjct: 1233 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIVALTAKAMKGDREKAIDSGASDYVTK 1289
Query: 1079 PIDSERMVSTI 1089
P+D +R+++ +
Sbjct: 1290 PVDPDRLLTAL 1300
>gi|381157613|ref|ZP_09866847.1| PAS domain S-box, partial [Thiorhodovibrio sp. 970]
gi|380881476|gb|EIC23566.1| PAS domain S-box, partial [Thiorhodovibrio sp. 970]
Length = 1266
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 168/332 (50%), Gaps = 48/332 (14%)
Query: 364 DERAYKTLIILISASVCILVIGCICILILTNGVSKEM-----------KLRAELISHLDA 412
D Y + +I+A+ +L + + NG K + K+R L A
Sbjct: 475 DGTPYGLDVQMITATGKLLWVRAVGNAEFDNGRCKRLFGTFQDIDEAKKIREALEQ---A 531
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
R +A+ +N KS+FLANMSHE+RTP+ ++IG ++L+ +L Q + V + +S+ +L
Sbjct: 532 RAEADTANRSKSEFLANMSHEIRTPLNSVIGFSDLLRQSSELNETQRNYVGYVNQSAKSL 591
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L LLN ILD SK+E+GK+EL + DL +++D+ + + +E +L ++ +P
Sbjct: 592 LDLLNDILDFSKIEAGKLELSPEQIDLDDLTRQIIDVVRYKTNEKGLELLLHIASEVPHV 651
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ DP R+ Q+ NLI+N+IKFT +GHI I E DT +
Sbjct: 652 IHADPIRLRQVLINLISNAIKFTEAGHIRIDISAEQTDTPGIS----------------- 694
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
L F V DTGCGI + E +F++F Q D STTRK GGTGLGL
Sbjct: 695 -----------------ELGFAVSDTGCGIALDQQERIFDAFTQEDASTTRKFGGTGLGL 737
Query: 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
SI L+N MG +++ + G+ + L
Sbjct: 738 SISNRLLNLMGSRLELDSEPGQGSTFSFRVRL 769
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 28/144 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKV--GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
LRILL +D PL I+A ++ ++ GA + G AV
Sbjct: 948 LRILLVDDHPLNLILARHLVAEMLPGAHIEEFSGGEDAVRYC------------------ 989
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC 1067
T +TP DL+LMD QMP M+GY+AT +IR ES R +PI+ALTA + ++++C
Sbjct: 990 ---TENTP--DLVLMDVQMPGMNGYDATSQIRARES---GRRVPIIALTAGTLKGEKERC 1041
Query: 1068 LGVGMNAYLTKPIDSERMVSTILR 1091
L GM+ YL KPID + + + ++R
Sbjct: 1042 LQAGMDDYLVKPIDIDALHAALVR 1065
>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
Length = 1838
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 152/286 (53%), Gaps = 24/286 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D+ L+ +Q I + LL+L+
Sbjct: 1347 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADENLSPKQVEFAETIHGAGSDLLQLI 1406
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1407 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1466
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT +G ++IR G ++
Sbjct: 1467 EQRLLQVLRNLLSNAVKFTDTGAVELVIR--------------------PAGTDVPPAIR 1506
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + RE + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1507 EQLLEAGSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGGTGLGLSI 1566
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
R + +GGEI + G+ LYL L S Q Y P
Sbjct: 1567 SREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELPPQGYAPPTPG 1612
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1764 VVLMDIMMPEMDGYATTSAIRRMPQFAG---LPIIALTAKAMKGDREKAIDSGASDYVTK 1820
Query: 1079 PIDSERMVSTI 1089
P++ + ++S +
Sbjct: 1821 PVEPDYLLSVM 1831
>gi|357402093|ref|YP_004914018.1| Sensor protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358162|ref|YP_006056408.1| two-component system sensor kinase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337768502|emb|CCB77215.1| Sensor protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365808670|gb|AEW96886.1| two-component system sensor kinase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 1802
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 24/276 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D L+ +Q I + LL+L+
Sbjct: 1331 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFAETIHGAGSDLLQLI 1390
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1391 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPVTLHTD 1450
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT +G ++IR G+ ++
Sbjct: 1451 EQRLLQVLRNLLSNAVKFTDAGAVELVIR--------------------PAGKDIPNAIR 1490
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q + + R+ ++ + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1491 EQLLESGSLRDPDQEIIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1550
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
R + +GGEI + G+ LYL L +E+
Sbjct: 1551 SREIARLLGGEIHADSEPGRGSTFTLYLPLNTGAEA 1586
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 25/141 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
G ++L+ +D +LE+ G TV +G + +E L
Sbjct: 1680 GEKVLIVDDDIRNVFALTSVLEQHGLTVLYAENGREGIEVL------------------- 1720
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
E D ++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K +
Sbjct: 1721 -EQHDD--VAVVLMDIMMPEMDGYATTSAIRRMPQFAG---LPIIALTAKAMKGDREKSI 1774
Query: 1069 GVGMNAYLTKPIDSERMVSTI 1089
G + Y+TKP+D++ ++S +
Sbjct: 1775 ESGASDYVTKPVDTDHLLSVM 1795
>gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum]
Length = 947
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 171/340 (50%), Gaps = 34/340 (10%)
Query: 356 REYIMGKADERAYKTLIILISASVCIL-VIGCICILILTNGVSKEMKLR-AELISHLDAR 413
EY+ G + +I ++ I+ +I +C + +E KL+ A+L DA
Sbjct: 493 HEYVQGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAA 552
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL 473
+A + + +FLA MSHE+RTP+ +IG+ +L+ L E+ + +K LL
Sbjct: 553 IEAYQA---RQEFLATMSHEIRTPLNGLIGMATLLRDSHNLPPEEKTMAKAVKSCGDILL 609
Query: 474 RLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNV 533
RL+N ILDLSK+E+ +M LE+ F +++ +++ + S Q + ++ ++SD IP +
Sbjct: 610 RLVNDILDLSKLEANQMGLEHIPFKMRELTQQICHVLSGQANEKGIQLACEVSDKIPATL 669
Query: 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593
GD GR+ QI NL N++KFT SG++ I +D + +E + RK
Sbjct: 670 VGDSGRILQILMNLTGNALKFTQSGYVKII-----VDLIEEESELVSSRK---------- 714
Query: 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653
+ + F + DTG G+ + +FE+F Q DPS +RK+GG+GLGL
Sbjct: 715 -------------GEYNISFRIKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLY 761
Query: 654 IVRTLVNKMGGEIKVVKK-NSPGTLMQLYLLLGASSESKQ 692
+ LV M GEI V + G+ + L ++S Q
Sbjct: 762 LCAKLVKLMKGEIGVYNNPDCEGSTFWFIIPLEEGTDSMQ 801
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 27/146 (18%)
Query: 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGS 1007
+ +++L+AED + Q VA K LEK+G V +G + +E L +
Sbjct: 814 DCIKVLIAEDNIINQRVAVKFLEKIGIKADVAGNGNEVLEILEKQ--------------- 858
Query: 1008 PSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE-SEHGARNIP---IVALTAHAMNAD 1063
+DLI MD QMP +DG + IR+ E ++ +R+ P I LTA+ M+ D
Sbjct: 859 --------HYDLIFMDFQMPILDGLRCSKTIREYERNDKWSRHKPSIFICGLTANTMSTD 910
Query: 1064 EKKCLGVGMNAYLTKPIDSERMVSTI 1089
+K+C GMN +++KP E++ S I
Sbjct: 911 KKRCFDHGMNHFISKPFQLEQLRSAI 936
>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
Tu6071]
gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
Tu6071]
Length = 2013
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 149/270 (55%), Gaps = 24/270 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L + + L+++Q I + LL+L+
Sbjct: 1389 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSDLLQLI 1448
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKME+ T L + ++ + F N++ + +S +P + D
Sbjct: 1449 NDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTD 1508
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG +IIR A+ P ++
Sbjct: 1509 EQRLLQVLRNLLSNAVKFTGSGAVELIIR---------PAGADVPD-----------AIR 1548
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + E + + F V DTG GI + K +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1549 EQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1608
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
R + +GGEI + G+ LYL L
Sbjct: 1609 SREIARLLGGEIDAQSQPGRGSTFTLYLPL 1638
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PIVALTA AM D +K + G + Y+TK
Sbjct: 1939 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIVALTAKAMKGDREKAIDSGASDYVTK 1995
Query: 1079 PIDSERMVSTI 1089
P+D +R+++ +
Sbjct: 1996 PVDPDRLLTAL 2006
>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
Length = 760
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 191/394 (48%), Gaps = 49/394 (12%)
Query: 375 ISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHEL 434
+S ++ VI + IL + +K+ + + + +AEA++ KSQFLA +SHE+
Sbjct: 93 LSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEI 152
Query: 435 RTPM-AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493
RTPM + L +L+++ T Y+ Q AL+ L+N +LD +K+E+GK+ELE
Sbjct: 153 RTPMNGILGMLGLLLRTELNSTQRDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLELE 210
Query: 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK 553
FDL+ L++++ +FS + + +E + +SD +P V GDPGR QI +NL+ NS+K
Sbjct: 211 AVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVK 270
Query: 554 FTSSGHIIIR-GWCENL--------DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN-- 602
FT GHI ++ EN +T +N G +T +A + N
Sbjct: 271 FTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNW 330
Query: 603 -------------------------FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG 637
F E L +C V+DTG GI S + +F F Q
Sbjct: 331 DNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVC--VEDTGIGIPFSAQDRIFMPFVQA 388
Query: 638 DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS-----SESKQ 692
D ST+R +GGTG+GLSI + LV MGG+I + + G+ G +E K+
Sbjct: 389 DSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKK 448
Query: 693 IYDADFPNTVVVLATV---GSMERMIISQWLRKK 723
+ D P++ L V G R ++++ K+
Sbjct: 449 VNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKR 482
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 34/173 (19%)
Query: 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAES 997
N S++ + +L G +IL+ +D + + VA L+ GA V G A+E L
Sbjct: 606 NGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEML-------- 657
Query: 998 SRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE--------SEHGAR- 1048
+ P +FD MD QMP+MDG+EAT IR+ E SE G R
Sbjct: 658 ------------QFPH--KFDACFMDIQMPEMDGFEATRRIREMERTANEETNSECGERK 703
Query: 1049 ---NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098
++PI+A+TA ++A ++CL GM+ Y++KP + E + + + + P+
Sbjct: 704 SEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPT 756
>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
Length = 1963
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 149/270 (55%), Gaps = 24/270 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L + + L+++Q I + LL+L+
Sbjct: 1367 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSDLLQLI 1426
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKME+ T L + ++ + F N++ + +S +P + D
Sbjct: 1427 NDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTD 1486
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG +IIR A+ P ++
Sbjct: 1487 EQRLLQVLRNLLSNAVKFTGSGAVELIIR---------PAGADVPD-----------AIR 1526
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + E + + F V DTG GI + K +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1527 EQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1586
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
R + +GGEI + G+ LYL L
Sbjct: 1587 SREIARLLGGEIDAQSQPGRGSTFTLYLPL 1616
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PIVALTA AM D +K + G + Y+TK
Sbjct: 1889 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIVALTAKAMKGDREKAIDSGASDYVTK 1945
Query: 1079 PIDSERMVSTI 1089
P+D +R+++ +
Sbjct: 1946 PVDPDRLLTAL 1956
>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
Length = 1928
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 149/270 (55%), Gaps = 24/270 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L + + L+++Q I + LL+L+
Sbjct: 1310 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAERNLSHKQVEFAETIYGAGSDLLQLI 1369
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKME+ T L + ++ + F N++ + +S +P + D
Sbjct: 1370 NDILDLSKVEAGKMEVSPTRIALVQLVDYVEATFRPMTVEKNLDFSVRVSPELPATLHTD 1429
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG +IIR A+ P ++
Sbjct: 1430 EQRLLQVLRNLLSNAVKFTGSGAVELIIR---------PAGADVPD-----------AIR 1469
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + E + + F V DTG GI + K +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1470 EQLLEAGSLTEPDGKMIAFSVTDTGIGIAEGKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1529
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684
R + +GGEI + G+ LYL L
Sbjct: 1530 SREIARLLGGEIDAQSQPGRGSTFTLYLPL 1559
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PIVALTA AM D +K + G + Y+TK
Sbjct: 1854 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIVALTAKAMKGDREKAIDSGASDYVTK 1910
Query: 1079 PIDSERMVSTI 1089
P+D +R+++ +
Sbjct: 1911 PVDPDRLLTAL 1921
>gi|427728900|ref|YP_007075137.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427364819|gb|AFY47540.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 615
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 193/408 (47%), Gaps = 60/408 (14%)
Query: 351 VIIIPREYIMGKADE--RAYKTLIILISASVCILVIGCICILILTNGVSKEMKLRAELIS 408
V+I +E++ E ++ KTLI+ IS S V G C ++ ++ + A L
Sbjct: 82 VLIALQEHLQATEYEFKQSQKTLILEISGSSIEFVNGEKCAVLAIRDITARKQTEAAL-- 139
Query: 409 HLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKS 468
A+ A+ +N KSQFLANMSHELRTP+ I+G ++L L Q + I +S
Sbjct: 140 -QQAKEAADVANIAKSQFLANMSHELRTPLNIILGFTQLLTRYGSLDTHQQEYLDTISRS 198
Query: 469 SYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDN 528
LL+L++ +L++SK+E+GK L T FDL+ LE L M S++ + ++ + L+ +
Sbjct: 199 GEHLLKLIDDVLEMSKIEAGKTTLNPTGFDLKHLLETLYQMLSLKSQSKGLQLIFKLAPD 258
Query: 529 IPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRA 588
+P+ + D ++ Q+ NL+ N+IKFT G + +R W
Sbjct: 259 LPQYICADESKLRQVLINLLGNAIKFTQIGSVTLRVW----------------------- 295
Query: 589 FRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648
Q A+ D + L FEV+DTG GI+ E +FE F Q + GT
Sbjct: 296 -------QDTEAI----DTGIRLLFEVEDTGSGIELMDMERLFEPFVQTQTGENSQE-GT 343
Query: 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATV 708
GLGL I + V MGGE+ + GT+ + + + S Q+ A V+ LA
Sbjct: 344 GLGLPISQKFVRLMGGEMTANSQVGVGTIFR-FDIHTQQIRSDQVETAKSSQQVIALAVG 402
Query: 709 GSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFD 756
R+++++ + + QI+ +LL P+ GFD
Sbjct: 403 QPKYRILVAE-------------DKPEIRQIMIKLLQPV------GFD 431
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 35/193 (18%)
Query: 896 SFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEG---LRI 952
S +F + GE ++ + + T+FR R DQ ++ SS + G RI
Sbjct: 350 SQKFVRLMGGEMTANSQVGVGTIFRFDIHTQQIRSDQ-VETAKSSQQVIALAVGQPKYRI 408
Query: 953 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1012
L+AED P I+ + K+L+ VG V V +G +A+ AL + S P
Sbjct: 409 LVAEDKPEIRQIMIKLLQPVGFDVREVNNGEEAI-ALCK-----------------SWCP 450
Query: 1013 DTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP--IVALTAHAMNADEKKCLGV 1070
DL+ MD +MP MDGYEAT I+ A + P ++ALT A D L
Sbjct: 451 -----DLVWMDMRMPVMDGYEATKRIKT------AIDSPPVVIALTGSAFEEDRIVALST 499
Query: 1071 GMNAYLTKPIDSE 1083
G + ++ KP E
Sbjct: 500 GCDDFVRKPFRVE 512
>gi|408528904|emb|CCK27078.1| two-component system sensor kinase [Streptomyces davawensis JCM 4913]
Length = 1796
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 149/284 (52%), Gaps = 32/284 (11%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D LT +Q I + LL+L+
Sbjct: 1332 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLTPKQVEFAETIHGAGSDLLQLI 1391
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLS----DNIPRN 532
N ILDLSKVE+GKM++ T L +LVD E LDLS +P
Sbjct: 1392 NDILDLSKVEAGKMDVSPTRI----ALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPAT 1447
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHI--IIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ Q+ NL++N++KFT SG + +IR A+ P
Sbjct: 1448 LHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIR---------PAGADVPV---------- 1488
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+++Q + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGL
Sbjct: 1489 -GIREQLLETGSLRDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGL 1547
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
GLSI R + +GGEI + G+ LYL L S Q Y
Sbjct: 1548 GLSISREIAQLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGY 1591
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1722 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIESGASDYVTK 1778
Query: 1079 PIDSERMVSTI 1089
P+D + ++S +
Sbjct: 1779 PVDPDHLLSVM 1789
>gi|345009740|ref|YP_004812094.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
4113]
gi|344036089|gb|AEM81814.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
4113]
Length = 1851
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 151/280 (53%), Gaps = 24/280 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L +D L+ +Q I + LL+L+
Sbjct: 1353 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNADGNLSPKQVEFAETIHGAGSDLLQLI 1412
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1413 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1472
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR A+ P A R +L
Sbjct: 1473 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGADVP-------HAIREQLL 1516
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1517 EHGA----LRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1572
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
R + +GGEI + G+ LYL L S Q Y
Sbjct: 1573 SREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELPPQGY 1612
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
L+LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1777 LVLMDIMMPEMDGYATTAAIRRMPQFAG---LPIIALTAKAMKGDREKSIEAGASDYVTK 1833
Query: 1079 PIDSERMVSTI 1089
P+D++ +++ +
Sbjct: 1834 PVDTDHLLTVM 1844
>gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae]
gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720]
Length = 1082
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 154/299 (51%), Gaps = 38/299 (12%)
Query: 400 MKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
+ LR + + AR AE +N+ KS+FLANMSHE+RTP+ IIG+ + L D +LT Q
Sbjct: 468 LNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQ-LSLDTELTQYQR 526
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
+ + + +LL +++ ILD+SK+E+ +M +E +F L+ + + +V+ N+
Sbjct: 527 EMLSIVNNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGNVFGALKTLAVKAIEKNL 586
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
+ + P N+ GD R+ Q+ NL N+IKFT G + + + K + P
Sbjct: 587 DLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKKGKVSV--------SVKKSDVTP 638
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
D +KL L F V DTG GI++ K +F++F Q D
Sbjct: 639 AD------------------------SDKLLLEFNVSDTGIGIERDKLGLIFDTFCQADG 674
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS-----SESKQI 693
STTRK GGTGLGLSI + L+ MGGEI V G+ + + S SES+Q+
Sbjct: 675 STTRKFGGTGLGLSISKQLIQLMGGEIWVTSDYGHGSCFSFTVSVSQSKIKYTSESEQL 733
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 28/151 (18%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
+ILLAED + Q +A KILEK G V VV +GL+A EA+ +
Sbjct: 866 KILLAEDNLVNQKLAVKILEKQGHKVHVVENGLEAFEAIRK------------------- 906
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHG-----ARNIPIVALTAHAMNADEK 1065
++D++LMD QMP M G+EAT +IR+ E + + PI+ALTAHAM D +
Sbjct: 907 ----NKYDVVLMDVQMPVMGGFEATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDRE 962
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
K L GM+ Y++KP+ + ++ TI + N+
Sbjct: 963 KSLAKGMDDYVSKPLKPKLLMQTIAKCIHNI 993
>gi|440229490|ref|YP_007343283.1| signal transduction histidine kinase [Serratia marcescens FGI94]
gi|440051195|gb|AGB81098.1| signal transduction histidine kinase [Serratia marcescens FGI94]
Length = 910
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 145/256 (56%), Gaps = 38/256 (14%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLL-EILKSDDQLTNEQYSTVCQIKKSSY 470
A+++A+ + KS+FLANMSHELRTP+ +IG ++LK++ T Y + I++S+
Sbjct: 281 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTELSATQNDY--LQTIERSAN 338
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL ++N +LD SK+E+GK+ LE+ F L++ L+E++ + + +E LD+ +++P
Sbjct: 339 NLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVP 398
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
V GD R+ Q+ +NL+ N++KFT +G+I IR R
Sbjct: 399 EQVIGDSLRLQQVITNLLGNAVKFTETGNIDIR-----------------------VELR 435
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+ Q L ++ DTG GI + + +F++F Q D S +R+HGGTGL
Sbjct: 436 NQLEHQVE------------LEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTGL 483
Query: 651 GLSIVRTLVNKMGGEI 666
GL I + LV +M G+I
Sbjct: 484 GLVITQKLVKEMNGDI 499
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 953 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1012
LL +TP Q +A ++ TV V D ++ + +LA + + +LL E
Sbjct: 644 LLRMETPR-QELAAPARNRLPLTVMAVDDNPANLKLIGTLLAEQVEK--TLLCEGGEEAI 700
Query: 1013 DTPR---FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
R DLILMD QMP +DG + IR+ + PIVA+TAHA++ + + L
Sbjct: 701 ALARDNVLDLILMDIQMPNIDGIRTSELIRQLPHHNST---PIVAVTAHAVSGEREHLLQ 757
Query: 1070 VGMNAYLTKPIDSERMVSTIL 1090
GM+ YL KPID E M++ +L
Sbjct: 758 AGMDDYLAKPID-EAMLTRVL 777
>gi|359413753|ref|ZP_09206218.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172637|gb|EHJ00812.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 983
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 146/271 (53%), Gaps = 37/271 (13%)
Query: 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLS 483
S FLANMSHE+RTPM IIG L +L+ +L Q + IK SSY L+ ++N ILD+S
Sbjct: 453 SLFLANMSHEIRTPMNGIIGFLSLLEKS-ELDIYQKDYIQTIKGSSYTLISIINDILDIS 511
Query: 484 KVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI 543
K+E+GK+E+E FDL +E + ++ + ++ +S +IPR V GDP ++ QI
Sbjct: 512 KIEAGKIEMEVISFDLISTIESAIGLYKAKAMEKGLKLNSYISSDIPRVVMGDPIKLRQI 571
Query: 544 FSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603
+NLI+N++KFT +G + + A+
Sbjct: 572 INNLISNAVKFTDNGEVAVEV-----------------------------------ALTH 596
Query: 604 REDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663
+ L E+ D+G G+++ + VF+ F Q D + TR++GGTGLGL+I R+LV MG
Sbjct: 597 ESHKDIELFMEIRDSGIGMNEKEINEVFKPFVQADSNFTRQYGGTGLGLAICRSLVEMMG 656
Query: 664 GEIKVVKKNSPGTLMQLYLLLGASSESKQIY 694
G I++ + G+ ++ L L +E ++Y
Sbjct: 657 GSIELKSEEGKGSTFRINLRL-TKAEKMEVY 686
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 27/145 (18%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
++ILL ED + + IL+ G + +G++AV A
Sbjct: 729 IKILLVEDNEINIRLFINILKVRGLKCDIALNGVEAVAAY-------------------- 768
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+ ++D+I MDCQMP MDGYEAT +IR +ES+H IPI+A+TAHAM D +KCL
Sbjct: 769 ---ENNKYDIIFMDCQMPMMDGYEATKKIRNTESKH----IPIIAMTAHAMQGDREKCLE 821
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTK 1094
GM+ YLTKP +++ + + K
Sbjct: 822 AGMDDYLTKPFGFNQVIEMLQKYVK 846
>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 1131
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 149/277 (53%), Gaps = 29/277 (10%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTNEQYSTVCQIKKSSYA 471
R+ E ++ YKS FLANMSHELRTP+ +++ L ++L + D LT +Q I +S
Sbjct: 446 RELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLTAKQIEYATIIHRSGND 505
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDL+K+E+G + + ++ + +L +F+V V+ + L +++P
Sbjct: 506 LLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLITKLHESVPA 565
Query: 532 NVRGDPGRVFQIFSNLINNSIKFT-SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ D R+ QI NL++N+ KFT G I + E F + R
Sbjct: 566 EILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVET---------------SFPKITR 610
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
+L+++ K L V DTG GI K + +FE+F+Q D ST+RK+GGTGL
Sbjct: 611 QELRKE-----------KSLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGL 659
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687
GLSI R L+ ++GGEI + + G+ L+L L S
Sbjct: 660 GLSISRELIKRLGGEITLHSEEGKGSTFTLWLPLSLS 696
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT----PRFDLILMDCQMPK 1028
G TV +V D ++ V +++ +L E ++ + E DT + DL+LMD MP
Sbjct: 1010 GKTVLLVDDDMRNVFSISTLL--EENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPV 1067
Query: 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST 1088
MDGYEAT RK +E+ +PI+ALTA AM D +KCL G + Y+TKP+D +++S
Sbjct: 1068 MDGYEAT---RKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSV 1124
Query: 1089 I 1089
+
Sbjct: 1125 M 1125
>gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 977
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 142/274 (51%), Gaps = 36/274 (13%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
AR +AE K +FLANMSHE+RTPM A++GL +L+ L +E + QI +S +
Sbjct: 568 ARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLERQ-PLPDEAHELARQIHRSGQS 626
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL ++N ILD SK+ESG++E+E F L + L+ LV + ++ ++ V+ +++
Sbjct: 627 LLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLES 686
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
++ GDP R+ QI NL +N++KFTS G + +R E++
Sbjct: 687 SLVGDPLRLGQILINLTSNAVKFTSDGQVEVR--VESIA--------------------- 723
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
R ++ L F V DTG GID +F+ F Q D STTR+ GG+GLG
Sbjct: 724 ------------RSHTEVTLRFTVRDTGIGIDPETQAHLFQPFTQADASTTRRFGGSGLG 771
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
L I R L MGG + + G+ L L G
Sbjct: 772 LVICRRLAELMGGRLGLDSVPGEGSTFWLELTFG 805
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 903 CPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQ 962
PGE S+ +L + + G+S D S L GLR+L+ +D+ + +
Sbjct: 791 VPGEGSTFWLELTFGLTEHESRPGTSSLDASPESGEPP------LSGLRVLVVDDSEINR 844
Query: 963 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022
VA I GA V + DG QAV+ L A D++LM
Sbjct: 845 EVAQLIFSGEGAEVCSLNDGRQAVDWLIAHPMA---------------------VDIVLM 883
Query: 1023 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081
D MP MDG AT IR++ IPIVALTA A+ E L GM+A+L KP+D
Sbjct: 884 DVHMPVMDGRTATRLIRETPE---IAWIPIVALTADAVGDQEGAALEAGMDAFLPKPLD 939
>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
Length = 720
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 39/278 (14%)
Query: 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482
KS FLANMSHE+RTPM ++G+ E+L + +LT EQ IK S ALL ++N +LD
Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLM-ETELTEEQRLFTSTIKNSGEALLVIINDVLDY 274
Query: 483 SKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQ 542
SK+E+ K+ L FDL++ + ELV + V + ++ ++D +P GDPGR+ Q
Sbjct: 275 SKIEAEKLILHAEPFDLERCIHELVTLMQVNARDKGLDVLVDYDLFLPTQFVGDPGRIRQ 334
Query: 543 IFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMN 602
I +NL+ N++KFT +GH+++R DT GRA
Sbjct: 335 IMTNLLGNAVKFTENGHVLVRVTGVYSDTE-------------GRA-------------- 367
Query: 603 FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662
++ V+DTG GI K + +F F Q D RK GTGLGL+I + L+ M
Sbjct: 368 -------SIHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRMM 420
Query: 663 GGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPN 700
GG+I V + G++ + L + ++ + FPN
Sbjct: 421 GGKIWVESEPGNGSIFGFSISLPVA----EVGEIAFPN 454
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 24/135 (17%)
Query: 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSP 1008
+R+L AED ++V +++ + ++ +G +AV+ + +P
Sbjct: 582 AMRVLAAEDNRTNRLVFSNMVKGLDIELTFAENGQEAVDLFQSL--------------AP 627
Query: 1009 SETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068
D+I MD MP+MDG EAT IR E++ G R++PIVA+TAHAM D+ + L
Sbjct: 628 ---------DVIFMDISMPEMDGKEATRAIRAIEAQSG-RHVPIVAMTAHAMTGDDAEIL 677
Query: 1069 GVGMNAYLTKPIDSE 1083
G++ YLTKP+ E
Sbjct: 678 AAGLDHYLTKPLRKE 692
>gi|385329994|ref|YP_005883945.1| extracellular solute-binding protein, family 3 [Marinobacter
adhaerens HP15]
gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [Marinobacter
adhaerens HP15]
Length = 902
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 182/349 (52%), Gaps = 32/349 (9%)
Query: 399 EMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
E +LRA + R+AEA++ KS+FLANMSHE+RTPM A+IG ++L S+ +Q
Sbjct: 529 EDELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLL-SNSVTDPQQ 587
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
+ + I+ S +LL L+N ILDLS++E+GKM L+ + +++ L+++ +F ++
Sbjct: 588 RNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQG 647
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+ + + +P + D R+ Q+ NL+ N+IKFT G + +R + L K +AE
Sbjct: 648 ITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTVRATAKPL--KKRSAEA 705
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
+ + R + L V D+G GI + E +F++FEQ +
Sbjct: 706 EQNPEAPERQY-------------------YKLIVTVSDSGIGIPPDQVERIFDAFEQQE 746
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADF 698
TR++GGTGLGL+I R L MGGE++V + G++ + L + +Q D
Sbjct: 747 GQNTRRYGGTGLGLAISRKLARMMGGELEVESEQGSGSVFTVTLPR-VEATVEQAEDEGV 805
Query: 699 P-NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDP 746
P + +LA SM+ WLR++ + EW + +RE DP
Sbjct: 806 PKESDRLLAQTLSMQE---RGWLREQLAADF-GDEW----EAVRESGDP 846
>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
autotrophica DSM 16294]
gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
autotrophica DSM 16294]
Length = 1053
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 147/265 (55%), Gaps = 36/265 (13%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
+ A+ ++ KS FLANMSHE+RTP+ I+G E+LK D L EQ V I+KSS L
Sbjct: 379 KEAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLK-DTGLKEEQQEFVEIIEKSSENL 437
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L ++N ILDLSK+ES K+E+E+ F+ +E E VD+++V+ S +++ + + +
Sbjct: 438 LEIINNILDLSKIESNKLEIEDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDPELEQP 497
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK-NTAEFPTDRKKFGRAFRT 591
++GDP ++ ++ NL++N++KFTSS I N+D K + + T R K
Sbjct: 498 LKGDPTKIKEVVINLLSNAVKFTSSSGAI------NVDIRKLQSPQEGTTRVK------- 544
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
FEV D+G G+ + +FE+F Q D S TRK+GGTGLG
Sbjct: 545 ---------------------FEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLG 583
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGT 676
L+I + MGG++ + + GT
Sbjct: 584 LTISARFIELMGGQLDLHSEPGEGT 608
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 23/137 (16%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+AED + Q + + LE +G +V + +GL+A + +R+
Sbjct: 772 KVLVAEDNIINQKLIKRTLEDLGLSVDIASNGLEAFQ-----------KRKD-------- 812
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DLI MD QMP +DG EAT EI + E + ++PI+ALTA+A+ D ++ L
Sbjct: 813 ----HNYDLIFMDIQMPFLDGTEATQEILEYEEVYNQPHVPIIALTANALKGDRERFLRA 868
Query: 1071 GMNAYLTKPIDSERMVS 1087
G++ Y TKP+ E +++
Sbjct: 869 GLDEYTTKPLVREEIIT 885
>gi|254567876|ref|XP_002491048.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
[Komagataella pastoris GS115]
gi|238030845|emb|CAY68768.1| Histidine kinase osmosensor that regulates a MAP kinase cascade
[Komagataella pastoris GS115]
gi|328352426|emb|CCA38825.1| Hybrid signal transduction histidine kinase J [Komagataella
pastoris CBS 7435]
Length = 1113
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 148/277 (53%), Gaps = 32/277 (11%)
Query: 400 MKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459
+ LR + + AR AE +N+ KS+FLANMSHE+RTPM IIG+ + L + +LT Q
Sbjct: 466 LNLRESIQRNTAAREAAELANSAKSEFLANMSHEIRTPMNGIIGMTQ-LTLETELTQYQR 524
Query: 460 STVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNV 519
+ + + +LL +++ ILD+SK+E+ +M +E F L+ + + +V+ +
Sbjct: 525 EMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIAFSLRGTVFGALKTLAVKAIEKQL 584
Query: 520 ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579
+ + + ++ P N+ GD R+ Q+ NL N+IKFT+ G + + T K A
Sbjct: 585 DLIYQVDNSFPDNLIGDSFRLRQVILNLAGNAIKFTTHGKVTL--------TVKKAARIV 636
Query: 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
++ D KL L F V DTG GI++ K +F++F Q D
Sbjct: 637 SNN-----------------------DEKLLLEFCVSDTGIGIEEDKLGLIFDTFCQADG 673
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
STTRK GGTGLGLSI + L++ MGGEI V G+
Sbjct: 674 STTRKFGGTGLGLSISKQLIHLMGGEIWVTSGYGAGS 710
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 33/168 (19%)
Query: 934 CSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRML 993
S SNS +Q ILLAED + Q +A +ILEK G V VV +GL+A A+ +
Sbjct: 853 ASPSNSDGSQS-----YNILLAEDNLINQKLAVRILEKHGHKVEVVENGLEAFNAVKK-- 905
Query: 994 AAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI--- 1050
R+D++LMD QMP M G+EAT IR E + ++
Sbjct: 906 ---------------------NRYDVVLMDVQMPIMGGFEATANIRDWERKSNPVDVLGF 944
Query: 1051 --PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096
PI+ALTAHAM D ++CL M+ YL+KP+ ++ TI + N+
Sbjct: 945 RTPIIALTAHAMLGDRERCLKAQMDEYLSKPLKPTVLLQTISKCIHNI 992
>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Neptuniibacter
caesariensis]
gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
sp. MED92]
Length = 670
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 158/277 (57%), Gaps = 42/277 (15%)
Query: 402 LRAELISHLDARRKA---EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ 458
LR E+IS L+ R+K E++N YKS F++N+SHE+RTPM ++GL+++L + L ++Q
Sbjct: 150 LRNEVISRLELRKKIKQLESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLL-ETPLNDKQ 208
Query: 459 YSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518
IK+S +LLR++N +LDLSKVE+GK+ +E EF+L + +++L + FS +
Sbjct: 209 LRYAQAIKRSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKK 268
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
+E D+ R + GD R+ QI +NL++N+IKFT +GW
Sbjct: 269 LELRTDIQLKSDRFI-GDHYRLKQILNNLLSNAIKFTD------KGWT------------ 309
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
A R K+ + D++ L F V DTG G+ + + +F+ F+Q +
Sbjct: 310 ---------ALRIKVVSET--------DDQATLKFSVSDTGLGLSEKQQSQLFKRFQQAN 352
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPG 675
+ TR+ GG+GLGLSI + L+ M G+I V K+ PG
Sbjct: 353 ETITREFGGSGLGLSICKQLLALMDGDIGV--KSEPG 387
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 23/135 (17%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
++L+ ED + QIVA +LEK+G V + +G + L
Sbjct: 420 KVLVVEDNRVNQIVAKGVLEKLGLEVELAENGAVGMTKLR-------------------- 459
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
+DL+ MDC MP M G+EAT IR S IPI+A++A+AM+ D ++C V
Sbjct: 460 ---DNYYDLVFMDCHMPVMSGFEATKGIRSPNSLVHNPGIPIIAMSANAMDTDIEQCYEV 516
Query: 1071 GMNAYLTKPIDSERM 1085
GM+ + KP++ E++
Sbjct: 517 GMDGFTAKPLEREKI 531
>gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
Length = 862
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 14/295 (4%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
+R AE ++ KS FLANMSHE+RTP+ I+G+ ++ + LT EQ + +K +
Sbjct: 386 SRTAAEQASQAKSDFLANMSHEIRTPIHGILGMSALVLATG-LTEEQRDNMTTVKDCADM 444
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILD++K+E+G+ E+E F+L ++ + + + + D+ +P
Sbjct: 445 LLHLINGILDVAKIEAGRFEVELVSFNLCHVIKSTLHILEPRAREKRLWLKWDVDARVPT 504
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHI------IIRGWCENLDTSKNTAEFPTDRKKF 585
+ GD G++ NL+ N++KFT G++ + G ++D +KF
Sbjct: 505 VLVGDSGKLRHCLLNLVGNALKFTHQGYVQVTVAPYVDGLYPSVDPESTDRVMALTERKF 564
Query: 586 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKH 645
+K Q + ++ L F V D+G G+ + K +F+ F Q DPS +R +
Sbjct: 565 VFVPHCTVKNQPRTV---SDGAQMKLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLY 621
Query: 646 GGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT----LMQLYLLLGASSESKQIYDA 696
GGTGLGL IV+ V MGG+I V + G+ L+ YL+ G E Y+A
Sbjct: 622 GGTGLGLCIVQRFVELMGGQICVESEYGTGSTFCILLPFYLIEGTRVEETSNYEA 676
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 77/139 (55%), Gaps = 21/139 (15%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED + Q VA ++L+K G V V DGL+AVEAL
Sbjct: 729 RVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKS------------------- 769
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
D +DL+LMD QMP MDG EAT IRK E G + IPI+ LTA+AM + C
Sbjct: 770 --DHKAYDLVLMDIQMPGMDGLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEA 827
Query: 1071 GMNAYLTKPIDSERMVSTI 1089
GM+ YL KP D ++++STI
Sbjct: 828 GMDGYLPKPFDIKQVLSTI 846
>gi|428319892|ref|YP_007117774.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428243572|gb|AFZ09358.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2269
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 148/271 (54%), Gaps = 30/271 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N KS+FL+ MSHELRTP+ AI+G ++L D L++ Q + I +S
Sbjct: 1784 AKEVADAANQAKSEFLSKMSHELRTPLNAILGFTQVLARDSSLSDVQQGQLGIISRSGEH 1843
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N +L++SK+E+G++ L T FDL L L +M ++ + ++ ++ NIP+
Sbjct: 1844 LLALINDVLEMSKIEAGRIILNPTSFDLYYLLYSLEEMLKIKADSKGLQLCWHINSNIPQ 1903
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+ D ++ Q+ NL+ N+IKFT+ G + +R N PTD + RT
Sbjct: 1904 YVKTDESKLRQVLINLLGNAIKFTAKGSVTLRVAAINAKQKS-----PTDNE-----LRT 1953
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ FEV+DTG GID ++ +++FE+F Q D + + GTGLG
Sbjct: 1954 -------------------IRFEVEDTGHGIDPTEVDSLFEAFVQTD-AGRKSQEGTGLG 1993
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
L I R V MGG+I V + GT+ Y+
Sbjct: 1994 LPISRQFVQLMGGDITVSSTLNRGTIFSFYI 2024
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD QMP +DGYEAT +I+ + PIVALTA A + L G + +++K
Sbjct: 2099 LIWMDMQMPVIDGYEATRQIKAKIQDEAT---PIVALTASAFEEERALVLSSGCDDFVSK 2155
Query: 1079 PIDSE 1083
P E
Sbjct: 2156 PFQEE 2160
>gi|386393413|ref|ZP_10078194.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385734291|gb|EIG54489.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1340
Score = 157 bits (397), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 137/257 (53%), Gaps = 32/257 (12%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNR 478
+ K FLANMSHE+RTP+ A++G ++++ D +L Q + +++S+ LL L+N
Sbjct: 821 GSQAKGAFLANMSHEIRTPLNAVLGYVQLMLRD-RLEPRQRERLAVVEESAATLLSLIND 879
Query: 479 ILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
ILD SK+E+G+MEL+N FDL L +V V N ++ L + +PR+VRGD
Sbjct: 880 ILDYSKIEAGRMELKNESFDLPACLAAVVKEQEVLARNKGLDLTLAMGPEVPRDVRGDGL 939
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ Q+ NL++N++K+T +G + + T E P G A R L+
Sbjct: 940 RLRQVLRNLLSNAVKYTEAGSVAV--------AVSRTGELP---GPAGEAPRQVLR---- 984
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
F V DTG GI + + +F+SF Q D TR+ GTGLGL+I R L
Sbjct: 985 --------------FAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGTGLGLAICRRL 1030
Query: 659 VNKMGGEIKVVKKNSPG 675
MGG + V ++ PG
Sbjct: 1031 AGLMGGGVFV--ESVPG 1045
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 24/147 (16%)
Query: 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRS 1002
Q + LRILL ED + ++ A +LE G V++ +G A++ L R
Sbjct: 1081 QAEAMPRLRILLVEDNRVNRVFAGDLLESRGHEVAMAENGRAALDFLAR----------- 1129
Query: 1003 LLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA 1062
R D++LMD QMP MDG AT IR E +P+V L+A+AM+
Sbjct: 1130 ------------ERVDVVLMDIQMPVMDGLAATRAIRAGEDGIDP-ALPVVGLSAYAMDQ 1176
Query: 1063 DEKKCLGVGMNAYLTKPIDSERMVSTI 1089
+ ++ L G++ Y+TKPID E +
Sbjct: 1177 ERERFLAAGLDGYITKPIDVEAFFEVV 1203
>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
Length = 2478
Score = 157 bits (397), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 142/264 (53%), Gaps = 30/264 (11%)
Query: 422 YKSQFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSSYALLRLLNRI 479
YKS+FLANMSHELRTP+ +++ L ++L D L+ +Q I S LL L+N I
Sbjct: 1773 YKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLSTKQVEYANTIYASGGDLLSLINEI 1832
Query: 480 LDLSKVESGKMELENTEFDLQKELEELVDM-FSVQCSNHNVETVLDLSDNIPRNVRGDPG 538
LDLSKVE+GKM++E + L EL + ++ F + +++ PR++R DP
Sbjct: 1833 LDLSKVEAGKMQVEPRDIVL-TELNQFIERSFLPVAEQKGLSFTVEVGPGAPRHIRTDPQ 1891
Query: 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQAN 598
R+ Q+ NL++N+ KFT G + + + G F ++ +++
Sbjct: 1892 RLQQVLKNLLSNAFKFTDEGSV----------------QLKVKLAEVGTHFDHEVLRRS- 1934
Query: 599 NAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658
+ L F V DTG GI + K +FE+F+Q D ST RK+GGTGLGLSI R +
Sbjct: 1935 ---------RYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREI 1985
Query: 659 VNKMGGEIKVVKKNSPGTLMQLYL 682
+GGEI+V + G+ LYL
Sbjct: 1986 AKLLGGEIQVTSEPGRGSTFTLYL 2009
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076
D++LMD MP+MDGYE IRK + ++PI+A+TA A+ D +KC+ G + YL
Sbjct: 2403 VDIVLMDVMMPEMDGYETMRAIRK---DLKYSSLPIIAVTAKALKDDREKCMAAGASDYL 2459
Query: 1077 TKPIDSERMVSTI 1089
KP+D+++++ I
Sbjct: 2460 PKPVDTDKLLELI 2472
>gi|334119354|ref|ZP_08493440.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458142|gb|EGK86761.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2016
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 143/263 (54%), Gaps = 24/263 (9%)
Query: 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472
RR+AEA++ KS+FLA MSHE+RTPM A+IG+ +L D +L +Q + I+ S L
Sbjct: 1321 RREAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLL-DTELKAQQRDFIETIRNSGDTL 1379
Query: 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRN 532
L ++N ILD SK+ESGK+ELE L+ +E +D +V+ ++ + P+
Sbjct: 1380 LSIINDILDFSKIESGKLELEMYPLSLRDCIENAIDQLAVKADQKGIDLGYLIYPQTPKF 1439
Query: 533 VRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592
+ GD R+ QI NL+NN IKFT +G + I +D+ K +E
Sbjct: 1440 ILGDVTRLRQILVNLLNNGIKFTETGEVTISVQASLVDSDKTISE--------------- 1484
Query: 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652
N + + E + F + DTG GI ++ + +F+SF Q D STTR++GGTGLGL
Sbjct: 1485 ---PGNLSESLYE-----IEFAIQDTGIGIPANRLDRLFKSFSQVDASTTRQYGGTGLGL 1536
Query: 653 SIVRTLVNKMGGEIKVVKKNSPG 675
+I + L M G + V + G
Sbjct: 1537 AISKRLSETMNGMMWVESRGHVG 1559
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 32/199 (16%)
Query: 904 PGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQI 963
P + S + LIH + + Q ++ P S + +R+ LRILLAED + Q
Sbjct: 1710 PIKQSQLYQILIHVL---QAQPTKVQQHLPISVEDDMKLAQRL--PLRILLAEDHLVNQK 1764
Query: 964 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023
VA +LE++G + +GL+ +EAL+R +DL+LMD
Sbjct: 1765 VALLLLERLGYRADIAANGLEVLEALHRQ-----------------------PYDLVLMD 1801
Query: 1024 CQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCLGVGMNAYLTKPIDS 1082
QMP+MDG EA+ R+ E A P I+A+TA+AM D + CL GMN Y++KPI
Sbjct: 1802 VQMPEMDGLEAS---RRICQEWPAPPRPWIIAMTANAMQGDRQLCLDAGMNDYISKPIRV 1858
Query: 1083 ERMVSTILRLTKNMPSEAT 1101
E ++ + + N + T
Sbjct: 1859 EALIQALSQCQLNQEQQHT 1877
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQG 1006
L G R+L+ +D P + + + G + AVEALN + + E+
Sbjct: 1603 LSGKRLLIVDDQPTNRQILTLQAQSWGMQIRAAQS---AVEALNWLESGET--------- 1650
Query: 1007 SPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066
FD+ ++D QMP+M G I + H +P+V LT+
Sbjct: 1651 ----------FDVAILDMQMPQMHGLTLASAIHQHPKCH---RLPLVLLTSMGYPEASSS 1697
Query: 1067 CLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099
L A+L+KPI ++ ++ + + P++
Sbjct: 1698 ALSTHFAAFLSKPIKQSQLYQILIHVLQAQPTK 1730
>gi|110834459|ref|YP_693318.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
SK2]
gi|110647570|emb|CAL17046.1| sensor histidine kinase/response regulator [Alcanivorax borkumensis
SK2]
Length = 942
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 168/328 (51%), Gaps = 40/328 (12%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+R I+ ++A KA A N+ KS+FLA MSHE+RTPM I+G+ ++L+ D +T +Q
Sbjct: 421 VRDRAIAEMEAF-KAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRTD-MTQQQEQY 478
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
V I +S+ +LLR++N ILD SK+ESGK+EL+ L+ +++ V +F++ S +
Sbjct: 479 VGTIYQSTQSLLRVINDILDYSKIESGKLELDYRSIALENIVDDCVRLFALHSSEKGLPL 538
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ + +P ++ DP R+ QI +NL++N+ K T GHI
Sbjct: 539 YIHIDSRVPERIKTDPIRLKQIITNLLSNAFKCTDRGHI--------------------- 577
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
A LKQ NN L EV DTG G+D+ + ++F++F D S
Sbjct: 578 ------ALHVNLKQPPNN------KGVCMLMIEVVDTGIGLDEGQQSSLFQAFT--DLSA 623
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 701
KH G GLGL I + L+ +GGEI V +S G ++ L E+ Q N
Sbjct: 624 KTKHNGAGLGLVICKRLIELLGGEIGV--SSSLGRGATFWISLPVEVETNQ-RKPVLENR 680
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLE 729
V+ + + + + +SQ L + TLE
Sbjct: 681 KAVIISSSAPQLLSLSQMLSRWGAKTLE 708
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 22/143 (15%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++++AED + Q+V IL+ +G ++V DG QA+E L++ P+
Sbjct: 813 LKVIVAEDNAVNQLVIDSILKSLGIHATLVSDGEQALE---------------LVRNRPN 857
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGAR-NIPIVALTAHAMNADEKKCL 1068
+D+I MDC+MP MDGY+A+ EIR E+EH A+ + I+AL+AHA +K
Sbjct: 858 H------WDIIFMDCEMPIMDGYQASREIRALEAEHEAQPHCWIIALSAHATGDYVQKAR 911
Query: 1069 GVGMNAYLTKPIDSERMVSTILR 1091
G++ YL+KP+ +++ + R
Sbjct: 912 DAGVDDYLSKPVSQQQVRDALKR 934
>gi|350563713|ref|ZP_08932534.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349778848|gb|EGZ33199.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1253
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 151/296 (51%), Gaps = 59/296 (19%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI--LKSDDQLTNEQYSTVCQIKKSS 469
A+R+A+A+N KS+FLANMSHE+RTPM IIG+ E+ ++D Q + Q V Q S
Sbjct: 783 AKREADAANKAKSEFLANMSHEIRTPMNGIIGMSELGLTETDPQKMHHQLERVNQ---SG 839
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMF-----------SVQCSNHN 518
LL ++N ILD SK+E+GK+EL+ +F L + +EL D+F SVQC+
Sbjct: 840 RLLLGIINDILDFSKIEAGKLELDPQQFQLSQLKDELTDLFEGLAHEKGLAFSVQCA--- 896
Query: 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578
DN + + GD R+ Q+ +NLI N++KFT G +
Sbjct: 897 ------CKDNCVQCLYGDNLRLRQVLTNLIGNAVKFTDRGEV------------------ 932
Query: 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGD 638
KL ANN + L FE+ DTG G+ + + +F +F Q D
Sbjct: 933 ---------RLSIKLDSPANNPFG------VFLSFEIQDTGIGMTAEQQQKLFNAFTQAD 977
Query: 639 PSTTRKHGGTGLGLSIVRTLVNKMGG-EIKVVKKNSPGTLMQLYLLLGASSESKQI 693
S TRKHGGTGLGL I LV MGG +I + + + G++ + + + +QI
Sbjct: 978 TSITRKHGGTGLGLVISERLVRLMGGDDIHIQSQPNKGSIFSFSVPMMTCNPQQQI 1033
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 31/150 (20%)
Query: 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSE 1010
R+LL ED + Q VA +L ++G + + +G AVE +
Sbjct: 1050 RVLLVEDNEINQEVAATMLTQLGLALELAENGQIAVEKAKQ------------------- 1090
Query: 1011 TPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV 1070
P FDLILMD QMP MDGY+A IR+ + ++PIVALTA AM D K L V
Sbjct: 1091 ----PDFDLILMDIQMPVMDGYQACQAIRQFNA-----SMPIVALTAAAMVEDRAKALSV 1141
Query: 1071 GMNAYLTKPIDSERMVSTILRLTKNMPSEA 1100
GMN +L KP++S+ + L++++P E+
Sbjct: 1142 GMNDHLAKPLNSDDLYRV---LSEHLPKES 1168
>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1231
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 147/269 (54%), Gaps = 25/269 (9%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+A+N+ KS+FLANMSHELRTP+ AI+G +++ D L+ E + I +S
Sbjct: 736 AKESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDRSLSTEYIQYLNIINRSGEH 795
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N IL++SK+E+G+M L EFDL L+ L DM ++ + ++ +P+
Sbjct: 796 LLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKALKLTFQRDKTVPK 855
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
V+ D ++ QI NLI N++KFT G++I+R K GR R+
Sbjct: 856 FVKTDQSKLRQILINLIGNALKFTEKGNVILR------------------VKVAGRE-RS 896
Query: 592 KLKQQANNAMN---FREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG-G 647
+Q+ N + F + L FEV+DTG GI ++ +FE+F G +T K G G
Sbjct: 897 NNEQKENTNIPSSFFLLPSSFFLQFEVEDTGPGIAPEDFDKLFEAF--GQTATGLKSGQG 954
Query: 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
TGLGL I + V MGGEI V + G
Sbjct: 955 TGLGLPISQKFVQLMGGEITVSSQLGQGA 983
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LI MD +MP +DGYEAT +IR ++ +R I+ALTA +++ L G + + K
Sbjct: 1065 LIWMDMRMPVIDGYEATKKIR---AQSKSRETVIIALTASVFEEEQQLILSAGCDDMVRK 1121
Query: 1079 PIDSERMVSTI 1089
P + +++ +
Sbjct: 1122 PFKEQELLAKM 1132
>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
Length = 782
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 42/287 (14%)
Query: 390 LILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK 449
L +T V+ E +LR+ AR +AEA+N KS FLANMSHE+RTPM ++G+ E+L
Sbjct: 195 LDITTSVNYEEELRS-------ARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELL- 246
Query: 450 SDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509
+D L++EQ IK S ALL ++N +LD SK+E+ K+ L FDL++ + E+V +
Sbjct: 247 NDTTLSDEQKLYANTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVML 306
Query: 510 FSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENL 569
+ + ++D +P GDPGR+ Q+ +NL N++KFT+ GH+ +R
Sbjct: 307 LQPTARDKGLTILVDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLR------ 360
Query: 570 DTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWET 629
++ E+ A+ ++DTG GI K +
Sbjct: 361 ----------------------------VTGISNPEEGTCAVHCMIEDTGIGIPVEKIDH 392
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
VF F Q + RK GTGLGL+I R L+ M GEI V G+
Sbjct: 393 VFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWVESDEGKGS 439
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 24/142 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+RIL AED Q+V K+++ + + +G++AV +L Q S
Sbjct: 650 MRILAAEDNRTNQLVFRKMVKDLNIELQFANNGVEAV---------------ALYQ---S 691
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
PD L+ MD MP+MDG EAT EIRK E+ G R++PIVALTAHAM D L
Sbjct: 692 FEPD-----LVFMDISMPEMDGKEATGEIRKLEALTG-RHVPIVALTAHAMTGDSDGILA 745
Query: 1070 VGMNAYLTKPIDSERMVSTILR 1091
G++ YLTKP+ ++ IL+
Sbjct: 746 AGLDHYLTKPLRKAVILERILQ 767
>gi|254423560|ref|ZP_05037278.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196191049|gb|EDX86013.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 1070
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 153/275 (55%), Gaps = 10/275 (3%)
Query: 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLR 474
+A +N KSQFLA MSHELRTP+ AI+G ++L + L+ EQ + I +S LL
Sbjct: 556 EANTANRAKSQFLAKMSHELRTPLNAILGFTQLLHYHETLSFEQRDRLNIINRSGEHLLS 615
Query: 475 LLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVR 534
L+N +L+ S++E+G++ L + FDL + +E + +M +++ SN N+ ++ + +P+ V
Sbjct: 616 LINDVLETSRIEAGQLRLNESCFDLHQFIESIREMLTLRASNKNLLLKVNQTPRVPQYVW 675
Query: 535 GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
GD ++ Q+ NL+ N+IKFT++G + IR C + + P + + +
Sbjct: 676 GDEIKLRQVIINLVGNAIKFTNNGEVRIRVSCLS-----GMGKAPIAKLTEEQEEVLTEE 730
Query: 595 QQANN----AMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
N ++ + N + FEV DTGCGI ++ +FE F+Q + R + GTGL
Sbjct: 731 VLTNEIEGVSITEKVSNTACIQFEVSDTGCGIKSENFDAIFEPFKQTK-AGRRAYEGTGL 789
Query: 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685
GLSI R MGG+I+V + G+ ++ LG
Sbjct: 790 GLSISRQNARLMGGDIEVHSQLGEGSTFVCHVQLG 824
Score = 47.0 bits (110), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIP-IVALTAHAMNADEKKCLGVGMNAYL 1076
D ILMD MP+MDGY AT +IR ++ P I+AL+A ++ + G + Y+
Sbjct: 896 DCILMDLYMPRMDGYAATQQIRAEQAAIELTFPPAIIALSASVIDHFRSDLVSFGFDDYV 955
Query: 1077 TKPI 1080
+KP
Sbjct: 956 SKPF 959
>gi|441191797|ref|ZP_20970731.1| two-component system sensor kinase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
gi|440613670|gb|ELQ77074.1| two-component system sensor kinase, partial [Streptomyces rimosus
subsp. rimosus ATCC 10970]
Length = 574
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 147/268 (54%), Gaps = 24/268 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ L+ +Q I + LL+L+
Sbjct: 326 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLI 385
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 386 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 445
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL+ N++KFT SG ++IR +++ PTD R L
Sbjct: 446 EQRLLQVLRNLLANAVKFTDSGAVELVIRPAGDDV---------PTD-------IREHLL 489
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ RE + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 490 EHGA----LREADAGMIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSI 545
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYL 682
R + +GGEI + G+ LYL
Sbjct: 546 SREIARLLGGEIHAASEPGRGSTFTLYL 573
>gi|443477136|ref|ZP_21067004.1| response regulator receiver sensor signal transduction histidine
kinase [Pseudanabaena biceps PCC 7429]
gi|443017794|gb|ELS32161.1| response regulator receiver sensor signal transduction histidine
kinase [Pseudanabaena biceps PCC 7429]
Length = 569
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 142/267 (53%), Gaps = 45/267 (16%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILK-SDDQLTNEQYSTVCQIKKSSY 470
A+ A+++N KSQFL NMSHELRTP+ I+G ++LK S+D + N++ + Q +S
Sbjct: 229 AKEAADSANKAKSQFLTNMSHELRTPLNGILGYAQVLKTSNDPIKNQKGLDIIQ--RSGN 286
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
LL L+N ILDLSK+E+GK+ELE F L L EL+D F VQ S VE V IP
Sbjct: 287 HLLTLINDILDLSKIEAGKLELEYEPFYLNGLLTELLDTFKVQASKQKVEIVYRTIGQIP 346
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
+ V GD R+ Q+ NL+ N+IKFTS G ++ ++L ++K
Sbjct: 347 KLVYGDARRLRQVLFNLMGNAIKFTSEG--LVSLTVQDLGSNK----------------- 387
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQ-GDPSTTRKHGGTG 649
+ F++ D+G GI +FESFEQ GDP + GTG
Sbjct: 388 --------------------IRFDIVDSGVGIASEDLSKIFESFEQVGDPKDMQ--SGTG 425
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGT 676
LGLSI + LV MGGE+ V G+
Sbjct: 426 LGLSISQKLVALMGGELNVTSALGEGS 452
>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
Length = 1610
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 166/301 (55%), Gaps = 15/301 (4%)
Query: 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTNEQYSTVCQIKKSSYA 471
R+ E ++ YKS+FLANMSHELRTP+ +++ L ++L + LT++Q I +
Sbjct: 895 RELELASRYKSEFLANMSHELRTPLNSLLILAQLLTENRAGNLTDKQVEYAKTIHSAGSD 954
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N ILDLSKVE+G++E+ +E + F + +E + +++++P
Sbjct: 955 LLTLINEILDLSKVEAGRIEVHAEAVSFTDLVEMIEQKFRHVAAEQKLEFQITVANDLPP 1014
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRT 591
+ D R+ QI +NL++N+ KFTS G + LD P ++ G RT
Sbjct: 1015 ILHTDRQRLKQILNNLLSNAFKFTSQGAV-------KLDIQFLGENTPGYSQQEGVRGRT 1067
Query: 592 KLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651
+ + RE +++A F V DTG GI K ETVFE+F+Q D ST+R++GGTGLG
Sbjct: 1068 TPGDFQPDGIKGREKSQIA--FSVTDTGIGIPTDKQETVFEAFQQVDGSTSRRYGGTGLG 1125
Query: 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLY----LLLGASSESKQIYDADFPNTVVVLAT 707
LSI R L +GG+I + + G+ LY + +S++++ I + NT +L+
Sbjct: 1126 LSISRQLARLLGGDILLHSEADKGSTFTLYISEKIERHSSNDNRDIPETQIQNTPALLSP 1185
Query: 708 V 708
+
Sbjct: 1186 I 1186
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 23/146 (15%)
Query: 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRR 1001
+++ IL G ++L+ +D P ILE V +G +A+E L +
Sbjct: 1480 DKEAILAGKKVLIVDDDPRNTFALATILEDKNMEVIAGENGHEALELLEQH--------- 1530
Query: 1002 SLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061
++LMD MP+MDGYEA +IR ++ R +PI+ALTA AM
Sbjct: 1531 -------------EDIAIVLMDIMMPEMDGYEAMRQIR-AQKNRFRRQLPIIALTAKAMK 1576
Query: 1062 ADEKKCLGVGMNAYLTKPIDSERMVS 1087
D+ KC+ G N YL+KP+D+++++S
Sbjct: 1577 GDKTKCIEAGANDYLSKPVDTDKLIS 1602
>gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
sp. DG881]
gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax
sp. DG881]
Length = 927
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 174/348 (50%), Gaps = 47/348 (13%)
Query: 402 LRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYST 461
+R I+ ++A KA A N+ KS+FLA MSHE+RTPM I+G+ ++L+ +T++Q
Sbjct: 408 VRDRAIAEMEAF-KAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRTS-MTHQQAQY 465
Query: 462 VCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVET 521
V I +S+ +LL ++N ILD SK+ESGK+EL+ L+ +++ V +F+++ S ++
Sbjct: 466 VGTIYQSTQSLLTVINDILDYSKIESGKLELDYQPIALENIVDDCVRLFALRSSEKSLPL 525
Query: 522 VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTD 581
+ + +P ++ DP R+ QI +NL++N+ KFT GH+
Sbjct: 526 YIHIDSRVPERIKTDPIRLKQIITNLLSNAFKFTDRGHV--------------------- 564
Query: 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST 641
A LKQ NN L EV DTG G+D+ + ++F++F D S
Sbjct: 565 ------ALHVNLKQPVNN------KGMCVLMIEVVDTGIGLDEGQQSSLFQAFS--DLSA 610
Query: 642 TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNT 701
KH G GLGL I + L+ +GG+I V G L L + KQ A N
Sbjct: 611 KGKHNGAGLGLVICKRLIELLGGDIGVSSSLGRGATFWLSLPVEVEKIQKQPVLA---NR 667
Query: 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISP 749
+ + + + + +SQ L + TLE + + LDP SP
Sbjct: 668 TAAIISSTAPQLLSLSQILSRWGAKTLEYRD-------VITALDPASP 708
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 29/146 (19%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
L++++AED + Q+V IL+ +G ++V DG QAVE +
Sbjct: 800 LKVIVAEDNAVNQLVIDSILKSLGIHATLVSDGAQAVEQVR------------------- 840
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP----IVALTAHAMNADEK 1065
PD +D+I MDC+MP MDGY+AT EIR E+ A+ P I+AL+AHA +
Sbjct: 841 NHPD--YWDIIFMDCEMPVMDGYQATREIRALET---AQETPPHCWIIALSAHATGDYVQ 895
Query: 1066 KCLGVGMNAYLTKPIDSERMVSTILR 1091
K G++ YL+KP+ S++ V LR
Sbjct: 896 KARDAGVDDYLSKPV-SQQQVHDALR 920
>gi|411120735|ref|ZP_11393107.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410709404|gb|EKQ66919.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 1060
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 27/298 (9%)
Query: 389 ILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEIL 448
+L+L S K EL DA AE +N KS+FLANMSHELRTP+ AI+G +I+
Sbjct: 514 LLLLLEETSDRKKTELELQQAKDA---AEVANRAKSEFLANMSHELRTPLNAILGFTQIM 570
Query: 449 KSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVD 508
D L+ + + + I +S LL L+N +L+LSK+E+G++ L +T FDL LE L
Sbjct: 571 SHDPFLSEQNQNYLNIINRSGQHLLELINDVLELSKIEAGRIRLNSTSFDLHYFLESLEQ 630
Query: 509 MFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCEN 568
M V+ + + V + + ++P+ + D G++ Q+ NL+ N+IKFTS G + +R +
Sbjct: 631 MLRVKAIDKQLTLVFERATDLPQYITTDEGKLRQVLINLLGNAIKFTSQGSVTMRVQKQE 690
Query: 569 LDTSKNTAE-FPTDR--KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQS 625
++ S ++ +DR + ++FR L FE++DTG GI
Sbjct: 691 IENSSQVSQNLCSDRSPEYLNKSFR--------------------LYFEIEDTGPGIASE 730
Query: 626 KWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL 683
+ +F++F Q + + + GTGLGL I V MGG+I V G++ + +L
Sbjct: 731 DLQQLFQAFVQTK-TGQQANEGTGLGLKISSRFVQLMGGDITVQSIVGKGSIFRFDIL 787
>gi|428212540|ref|YP_007085684.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000921|gb|AFY81764.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1342
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 162/321 (50%), Gaps = 43/321 (13%)
Query: 396 VSKEMKLRAELISH---LD-ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD 451
+ +E + R +L LD A++ AE +N KS+FLA MSHE+RTP+ +IG+ ++L
Sbjct: 744 LERETQQRQQLAEQNLALDRAKQLAEVANQAKSEFLAMMSHEIRTPINGVIGMTDLLLDT 803
Query: 452 DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFS 511
Q T +Q I+ SS +LLR++N ILDLSK+ESGK+E + F L + V + +
Sbjct: 804 AQ-TQQQRQWTETIRNSSESLLRIINDILDLSKIESGKLEFDERPFSLPDCIARAVSVLA 862
Query: 512 VQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571
Q + + V ++ P + GD R+ QI NL+ N++KFT G I+
Sbjct: 863 PQATARGIRIVTQINPETPPQIMGDRTRLQQILVNLLGNAVKFTEVGEAIV--------- 913
Query: 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVF 631
S N + P L + ++R + F+V DTG GI +F
Sbjct: 914 SVNASPIP----------EALLASDNQQSCHYR------IQFQVQDTGIGIPPEGMHRLF 957
Query: 632 ESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESK 691
ESF Q D ST+R++GGTGLGL+I + L MGG++ V S GT G E+
Sbjct: 958 ESFSQVDLSTSRRYGGTGLGLAISKRLCESMGGQMWV---ESMGTCA------GNPPENW 1008
Query: 692 QIY----DADFPNTVVVLATV 708
Q+ D++FP + V
Sbjct: 1009 QVQPFSSDSEFPGSTFYFTIV 1029
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 23/140 (16%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED P+ Q VA + LEK+G +V +GL+A+EAL R
Sbjct: 1069 LRILLAEDNPVNQEVAMRTLEKIGYRADLVQNGLEALEALRRQ----------------- 1111
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+D++LMD +MP+MDG AT IR+ I+A+TA+AM D +KC
Sbjct: 1112 ------PYDVVLMDIEMPQMDGLTATKRIREEWQNRPEPGPKIIAITAYAMEGDRQKCFA 1165
Query: 1070 VGMNAYLTKPIDSERMVSTI 1089
GM+ Y+TKP + + S +
Sbjct: 1166 AGMDGYITKPFRIKALASAL 1185
>gi|300865281|ref|ZP_07110095.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336754|emb|CBN55245.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 963
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 23/291 (7%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYA 471
A+ A+ +N KS+FL+NMSHELRTP+ AI+G ++L D L EQ + I +S
Sbjct: 419 AKEAADKANRAKSEFLSNMSHELRTPLNAILGFTQLLARDSSLKFEQKEHLGIISRSGEH 478
Query: 472 LLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPR 531
LL L+N IL +SK+E G++ + FDL + LE + MF +Q N++ ++D++ ++P+
Sbjct: 479 LLNLINNILQMSKIEVGQVTVNKNNFDLYRLLESIEKMFQLQAEKKNLQLIIDIAPDLPQ 538
Query: 532 NVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE-------FPTDR-- 582
V+ D ++ Q N++ N+IKFT G + +R + K E FP +
Sbjct: 539 YVQTDESKLRQTLINILGNAIKFTQEGGVTLRVRMKEEAIKKKEDERISQKDNFPVKQLK 598
Query: 583 ----------KKFGRAFRTKLKQQANNAMN---FREDNKLALCFEVDDTGCGIDQSKWET 629
K + + +L + N N F +D+ L FE++DTG GI + +
Sbjct: 599 SIDLEPIEIAKNQEKIYNWELTESTKNIKNSLCFSDDSSFFLQFEIEDTGLGIAPEEIDN 658
Query: 630 VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680
+F+ F Q + S + GTGLGL I R V MGG+I V + G++ +
Sbjct: 659 LFKPFVQTE-SGMKAQEGTGLGLPISRQFVQLMGGDITVNSDINKGSIFKF 708
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
LILMD +MP MDGYEAT I+ + + I+ALTA A + + L G + ++ K
Sbjct: 785 LILMDMRMPVMDGYEATKRIK---AHLKGQATVIIALTASAFDEERSIILSTGCDDFVAK 841
Query: 1079 PI 1080
P
Sbjct: 842 PF 843
>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
NAS-14.1]
gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
NAS-14.1]
Length = 713
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 35/281 (12%)
Query: 410 LDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSS 469
+DAR AEA+N+ KS FLA MSHE+RTPM I+G+ E+L D LT +Q V IK S+
Sbjct: 203 VDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVL-GDTALTQDQRLYVDTIKTSA 261
Query: 470 YALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNI 529
ALL ++N +LD S++E+ ++ + FDL++ +E++ + ++ LD +
Sbjct: 262 EALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVLLLLQPLAVQKGLDLALDYDLFL 321
Query: 530 PRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589
PR + GD GR+ Q+ +NL+ N++KFT +GHI+IR T G
Sbjct: 322 PRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRA---------------TGLPDAG--- 363
Query: 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTG 649
A N + + ++DTG GI E + F Q + GTG
Sbjct: 364 -------AGNVL---------IKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTG 407
Query: 650 LGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSES 690
LGL+I + LV MGGEI V ++ G+ L L A +S
Sbjct: 408 LGLAICQRLVQLMGGEIWVTSEHGVGSCFGFELPLKAQEDS 448
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 25/146 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
+R+L AED ++V K+L+++ + + +G +AV
Sbjct: 582 MRVLAAEDNKTNRLVLRKMLQRLNIDLQLATNGQEAVALF-------------------- 621
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
+T R DL+ MD MPKM+G +A IR E E A + PIVALTAHA+ ++++ L
Sbjct: 622 ---ETFRPDLVFMDISMPKMNGKDAAAAIRALEGE--ASSCPIVALTAHAIQDEKERILA 676
Query: 1070 VGMNAYLTKPIDSERMVSTILRLTKN 1095
G++ +LTKP+ +V+ + R N
Sbjct: 677 AGLDHFLTKPLRKAELVALLNRYCPN 702
>gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
NRRL 11379]
Length = 1809
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 24/304 (7%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ L+ +Q I + LL+L+
Sbjct: 1327 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLI 1386
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1387 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1446
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT +G ++IR A+ P A R L
Sbjct: 1447 EQRLLQVLRNLLSNAVKFTDTGAVELVIR---------PAGADVPN-------AIREHLL 1490
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+ A + R+ + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1491 E----AGSLRDADADLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSI 1546
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERM 714
R + +GGEI + G+ LYL L + Q Y A + VL G M +
Sbjct: 1547 SREIARLLGGEIHAASEPGRGSTFTLYLPLHRAELPPQGYPAVGSGSAEVLGGAGEMGQA 1606
Query: 715 IISQ 718
SQ
Sbjct: 1607 QPSQ 1610
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PIVALTA AM D +K + G + Y+TK
Sbjct: 1735 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIVALTAKAMKGDREKAIDCGASDYVTK 1791
Query: 1079 PIDSERMVSTI 1089
P+D + +++ +
Sbjct: 1792 PVDPDHLLAVM 1802
>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1011
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 171/346 (49%), Gaps = 52/346 (15%)
Query: 373 ILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSH 432
I ++ + VI + IL + +K+ + + + +AEA++ KSQFLA +SH
Sbjct: 334 IALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAADVAKSQFLATVSH 393
Query: 433 ELRTPM-AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491
E+RTPM + L +LK++ T Y+ Q AL+ L+N +LD +K+E+GK+E
Sbjct: 394 EIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQ--ACGKALIALINEVLDRAKIEAGKLE 451
Query: 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNS 551
LE FD++ L++++ +FS + N +E + +SD +P V GDPGR QI +NL+ NS
Sbjct: 452 LEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNS 511
Query: 552 IKFTSSGHIII---------------------RGWCENLDTS------------------ 572
+KFT GHI + RG E + S
Sbjct: 512 VKFTERGHIFVKVHLSENSMSTMNGKTEKFINRGSGEPVHMSGAYNSKTLSGYEAADERN 571
Query: 573 --KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETV 630
N D + F F +K+ A+ + ++ L V+DTG GI S + +
Sbjct: 572 SWDNFKHLIADEEFF---FDASVKKAASESY-----EQVTLMVSVEDTGIGIPFSAQDRI 623
Query: 631 FESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGT 676
F F Q D ST+R +GGTG+GLSI + LV MGGEI + + G+
Sbjct: 624 FMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGS 669
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 35/201 (17%)
Query: 911 REDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970
R ++ ++ G R+ N S+ + +L G +IL+ +D + + VA L+
Sbjct: 822 RASMVAACLQQVLGTGKKRQHGKDMKPNGSTLVRSLLCGKKILVVDDNVVNRRVAAGALK 881
Query: 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030
GA V+ G A+E L + P FD MD QMP+MD
Sbjct: 882 NFGADVTCAESGKTALEML--------------------QLPHN--FDACFMDIQMPEMD 919
Query: 1031 GYEATIEIRKSESE------HGARN-------IPIVALTAHAMNADEKKCLGVGMNAYLT 1077
G++AT IR E++ +G N IPI+A+TA ++A +C+ GM+ Y++
Sbjct: 920 GFQATQRIRMMETKANEQQMNGEGNGWKDKYHIPILAMTADVIHATYDECVKYGMDGYVS 979
Query: 1078 KPIDSERMVSTILRLTKNMPS 1098
KP + E + + + P+
Sbjct: 980 KPFEEENLYQAVAKFFNPKPT 1000
>gi|428772854|ref|YP_007164642.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
gi|428687133|gb|AFZ46993.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
Length = 946
Score = 157 bits (396), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 19/284 (6%)
Query: 401 KLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYS 460
+L+A + A+ +AE +N KS FLANMSHELRTPM AI+G +I+ +L +EQ
Sbjct: 447 QLQAGNLELAQAKERAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSKKLDSEQLE 506
Query: 461 TVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVE 520
+ I +S LL L+N +LDLSK+E+GKM L DL ++E+ D+ ++ N++
Sbjct: 507 NISIINRSGNYLLNLINNVLDLSKIEAGKMMLNLKNIDLYNLIDEIEDLLYLKAEEKNLQ 566
Query: 521 TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580
+N+PR +R D ++ Q+ N+INN IKFT G + N+ T + +F
Sbjct: 567 LTFITDENVPRYIRTDETKLRQVLINIINNGIKFTDEGGV-------NIVTEIMSNDFS- 618
Query: 581 DRKKFGRAFRTKLKQQANNAMNFREDN-KLALCFEVDDTGCGIDQSKWETVFESFEQGDP 639
+T++ + N +D + + F V+D+G GI + + VF++F Q +
Sbjct: 619 ---------QTQVNKSWNQEDECYQDYPYVRIKFTVEDSGIGIAKEDIDKVFDAFIQTEV 669
Query: 640 STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLL 683
+ GTGLGLSI R V MGG+I + GT+ + +L
Sbjct: 670 G-RKSQEGTGLGLSISRKFVQLMGGDISLRSNLGKGTVFRFDIL 712
>gi|429201720|ref|ZP_19193168.1| HAMP domain protein [Streptomyces ipomoeae 91-03]
gi|428662748|gb|EKX62156.1| HAMP domain protein [Streptomyces ipomoeae 91-03]
Length = 1794
Score = 157 bits (396), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 153/285 (53%), Gaps = 24/285 (8%)
Query: 419 SNNYKSQFLANMSHELRTPMAAIIGLLEIL--KSDDQLTNEQYSTVCQIKKSSYALLRLL 476
S YKS+FLANMSHELRTP+ +++ L ++L ++ LT +Q I + LL+L+
Sbjct: 1325 SMRYKSEFLANMSHELRTPLNSLLILAKLLADNAESNLTPKQVEFAETIHGAGSDLLQLI 1384
Query: 477 NRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD 536
N ILDLSKVE+GKM++ T L + ++ + F + ++ + +S +P + D
Sbjct: 1385 NDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTD 1444
Query: 537 PGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLK 594
R+ Q+ NL++N++KFT SG ++IR A+ P ++
Sbjct: 1445 EQRLLQVLRNLLSNAVKFTDSGAVELVIR---------PAGADVPV-----------AIR 1484
Query: 595 QQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654
+Q A + + + + F V DTG GI SK +FE+F+Q D +T+RK+GGTGLGLSI
Sbjct: 1485 EQLLEAGSLSDPDADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSI 1544
Query: 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFP 699
R + +GGEI + G+ LYL L S Q Y + P
Sbjct: 1545 SREIARLLGGEIHAQSEPGRGSTFTLYLPLHPSELPPQGYAHNAP 1589
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078
++LMD MP+MDGY T IR+ G +PI+ALTA AM D +K + G + Y+TK
Sbjct: 1720 VVLMDIMMPEMDGYATTTAIRRMPQFAG---LPIIALTAKAMKGDREKAIDSGASDYVTK 1776
Query: 1079 PIDSERMVSTI 1089
P+D + +++ +
Sbjct: 1777 PVDPDHLLTVM 1787
>gi|374301703|ref|YP_005053342.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 842
Score = 157 bits (396), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 144/258 (55%), Gaps = 30/258 (11%)
Query: 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEI-LKSDDQLTNEQYSTVCQIKKSSY 470
A++ AEA+N KS+FLA+MSHE+RTPM IIGL E+ L + + Y + +K+S+
Sbjct: 449 AKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQEPKAKIRDY--LQMVKQSAN 506
Query: 471 ALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIP 530
+LL ++N ILDLSK+E+G++ELE+ +FDL+ L+ L + + + + +P
Sbjct: 507 SLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAERKGLSFSTAIDPGVP 566
Query: 531 RNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFR 590
++GD GR+ QIF NLI N+IK+T +G + +R E+ GR
Sbjct: 567 DWIKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGVED-----------------GRG-- 607
Query: 591 TKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650
A +A ++ L V DTG GI + K +FE F+ G + + K+ GTGL
Sbjct: 608 ------AQDAGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDTG--ARSAKYDGTGL 659
Query: 651 GLSIVRTLVNKMGGEIKV 668
GL+I + LV MGG I V
Sbjct: 660 GLAITKRLVELMGGRITV 677
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 25/143 (17%)
Query: 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPS 1009
LRILLAED + + +A ++L+ +G V+ V DG QA+E L++
Sbjct: 717 LRILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSK------------------ 758
Query: 1010 ETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG 1069
RFDL+LMD QMP+M G E T IR E+ G ++PIVALTA+A+ D ++ L
Sbjct: 759 -----ERFDLVLMDVQMPQMHGDEVTRRIRAGEA--GDPHVPIVALTAYALKGDRERFLA 811
Query: 1070 VGMNAYLTKPIDSERMVSTILRL 1092
GM+ YL+KPID + + + R+
Sbjct: 812 AGMDDYLSKPIDMQELERVLKRI 834
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,519,024,478
Number of Sequences: 23463169
Number of extensions: 687028516
Number of successful extensions: 2305974
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 40535
Number of HSP's successfully gapped in prelim test: 80806
Number of HSP's that attempted gapping in prelim test: 1986604
Number of HSP's gapped (non-prelim): 250249
length of query: 1105
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 951
effective length of database: 8,745,867,341
effective search space: 8317319841291
effective search space used: 8317319841291
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)