Query 001298
Match_columns 1105
No_of_seqs 651 out of 5506
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 6.1E-59 1.3E-63 595.3 75.3 484 413-1096 437-920 (924)
2 PRK11107 hybrid sensory histid 100.0 3.6E-58 7.7E-63 595.3 77.7 503 414-1097 284-789 (919)
3 PRK15347 two component system 100.0 5.6E-56 1.2E-60 575.0 70.0 424 413-1094 388-811 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 2.5E-53 5.4E-58 553.1 56.5 370 413-1095 454-823 (968)
5 PRK11091 aerobic respiration c 100.0 1.6E-52 3.4E-57 533.3 48.4 370 415-1096 275-646 (779)
6 PRK11466 hybrid sensory histid 100.0 2.3E-51 5E-56 531.6 56.2 364 415-1096 436-801 (914)
7 PRK09959 hybrid sensory histid 100.0 2.8E-47 6E-52 506.4 50.1 375 412-1094 701-1075(1197)
8 KOG0519 Sensory transduction h 100.0 2.7E-48 5.8E-53 485.1 14.7 579 395-1094 191-785 (786)
9 PRK10618 phosphotransfer inter 100.0 3.8E-44 8.2E-49 453.2 46.5 235 412-685 439-673 (894)
10 PRK13837 two-component VirA-li 100.0 3.2E-42 6.9E-47 440.2 53.5 367 421-1096 448-815 (828)
11 COG5002 VicK Signal transducti 100.0 1E-40 2.3E-45 358.2 19.6 223 423-686 225-450 (459)
12 COG2205 KdpD Osmosensitive K+ 100.0 2.3E-37 5.1E-42 365.3 34.0 227 415-686 652-881 (890)
13 PRK13557 histidine kinase; Pro 100.0 9.9E-36 2.1E-40 362.2 47.6 369 423-1097 163-537 (540)
14 PRK09303 adaptive-response sen 100.0 3.7E-35 8E-40 343.3 32.4 233 411-685 139-378 (380)
15 PRK11006 phoR phosphate regulo 100.0 9.3E-33 2E-37 328.3 29.5 221 422-685 203-424 (430)
16 PRK10604 sensor protein RstB; 100.0 7.4E-32 1.6E-36 320.9 35.7 222 416-687 205-426 (433)
17 PRK10364 sensor protein ZraS; 100.0 2.5E-30 5.3E-35 309.9 43.4 214 422-686 236-450 (457)
18 PRK10815 sensor protein PhoQ; 100.0 6.2E-31 1.3E-35 316.7 38.3 217 420-685 263-479 (485)
19 PRK09835 sensor kinase CusS; P 100.0 5.6E-30 1.2E-34 308.0 45.6 223 418-684 257-480 (482)
20 TIGR03785 marine_sort_HK prote 100.0 5.7E-30 1.2E-34 320.3 45.3 223 417-683 479-703 (703)
21 COG4191 Signal transduction hi 100.0 4.8E-30 1E-34 296.1 39.8 212 423-684 384-601 (603)
22 PRK10549 signal transduction h 100.0 1.8E-30 3.9E-35 311.2 37.6 227 417-687 234-461 (466)
23 TIGR01386 cztS_silS_copS heavy 100.0 5.3E-30 1.1E-34 305.6 35.1 218 421-683 239-457 (457)
24 PRK09470 cpxA two-component se 100.0 3.1E-29 6.8E-34 299.7 41.2 222 417-685 237-458 (461)
25 PRK10755 sensor protein BasS/P 100.0 8.3E-30 1.8E-34 295.2 34.8 215 420-685 134-351 (356)
26 PRK10490 sensor protein KdpD; 100.0 9.4E-30 2E-34 325.4 35.7 224 418-686 659-884 (895)
27 TIGR02938 nifL_nitrog nitrogen 100.0 6.6E-30 1.4E-34 306.5 30.4 214 421-684 274-494 (494)
28 PRK11100 sensory histidine kin 100.0 5.9E-28 1.3E-32 289.2 43.9 220 421-685 254-474 (475)
29 PRK10337 sensor protein QseC; 100.0 2.2E-28 4.9E-33 291.9 38.0 215 420-682 234-449 (449)
30 PRK09467 envZ osmolarity senso 100.0 2.1E-28 4.6E-33 290.8 34.0 214 415-685 221-434 (435)
31 COG3852 NtrB Signal transducti 100.0 9.8E-29 2.1E-33 263.5 24.4 221 421-686 130-356 (363)
32 COG4251 Bacteriophytochrome (l 100.0 3.5E-28 7.5E-33 279.2 25.5 227 413-687 514-744 (750)
33 TIGR02966 phoR_proteo phosphat 100.0 7.2E-28 1.6E-32 273.7 27.8 218 423-682 114-333 (333)
34 PRK11073 glnL nitrogen regulat 100.0 1.7E-26 3.7E-31 266.3 29.1 217 422-684 129-347 (348)
35 PRK11360 sensory histidine kin 99.9 4.1E-25 8.9E-30 271.6 30.5 214 422-686 389-603 (607)
36 COG0642 BaeS Signal transducti 99.9 9E-25 2E-29 245.7 30.4 217 422-686 114-331 (336)
37 TIGR02916 PEP_his_kin putative 99.9 8.2E-24 1.8E-28 265.6 28.8 203 423-683 475-679 (679)
38 PRK11086 sensory histidine kin 99.9 2.9E-22 6.2E-27 244.7 39.8 194 424-686 340-537 (542)
39 PRK13560 hypothetical protein; 99.9 1.3E-23 2.8E-28 268.4 24.8 208 412-686 594-805 (807)
40 COG5000 NtrY Signal transducti 99.9 3.6E-22 7.9E-27 229.6 29.4 206 426-684 489-708 (712)
41 PRK11644 sensory histidine kin 99.9 1.8E-21 3.9E-26 234.9 30.2 196 420-684 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 5.2E-21 1.1E-25 234.4 26.4 196 425-686 340-541 (545)
43 COG0745 OmpR Response regulato 99.9 3.3E-21 7.1E-26 208.8 17.1 121 950-1098 1-121 (229)
44 COG4192 Signal transduction hi 99.9 1E-19 2.2E-24 202.1 27.1 211 425-685 453-667 (673)
45 COG3290 CitA Signal transducti 99.8 1E-17 2.2E-22 193.7 36.5 194 425-686 335-533 (537)
46 PRK13559 hypothetical protein; 99.8 4.4E-18 9.4E-23 197.6 22.9 185 423-685 170-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 7.9E-19 1.7E-23 168.8 12.3 109 535-684 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.8 8.4E-17 1.8E-21 198.1 26.2 194 426-686 363-561 (565)
49 COG3706 PleD Response regulato 99.7 7.8E-17 1.7E-21 185.9 21.1 224 777-1097 31-254 (435)
50 COG3437 Response regulator con 99.7 1.5E-17 3.2E-22 183.7 13.4 121 948-1093 13-133 (360)
51 PF00072 Response_reg: Respons 99.7 2.5E-16 5.4E-21 150.7 15.5 111 952-1090 1-112 (112)
52 PRK10600 nitrate/nitrite senso 99.7 1.9E-15 4.2E-20 186.5 27.2 185 434-686 373-558 (569)
53 COG2204 AtoC Response regulato 99.7 1.9E-16 4.1E-21 184.1 16.0 118 950-1095 5-122 (464)
54 COG4753 Response regulator con 99.7 1.2E-16 2.6E-21 185.2 13.7 119 950-1096 2-123 (475)
55 COG0784 CheY FOG: CheY-like re 99.7 6.5E-16 1.4E-20 151.7 16.7 121 948-1095 4-126 (130)
56 COG2197 CitB Response regulato 99.6 2.7E-15 5.9E-20 161.1 16.7 118 951-1096 2-121 (211)
57 COG4566 TtrR Response regulato 99.6 3E-15 6.6E-20 151.4 13.5 120 949-1096 4-123 (202)
58 PRK09581 pleD response regulat 99.6 3.6E-14 7.7E-19 169.3 25.2 269 703-1094 5-273 (457)
59 PRK10547 chemotaxis protein Ch 99.6 2.4E-14 5.2E-19 175.7 21.3 146 497-686 343-525 (670)
60 PLN03029 type-a response regul 99.6 1.3E-14 2.8E-19 157.4 16.7 138 949-1092 8-145 (222)
61 PRK10046 dpiA two-component re 99.6 4.2E-14 9E-19 153.7 17.0 117 949-1093 4-122 (225)
62 COG4565 CitB Response regulato 99.6 3.3E-14 7.1E-19 146.8 14.3 117 950-1094 1-119 (224)
63 PRK11173 two-component respons 99.6 7.3E-14 1.6E-18 152.2 17.7 118 950-1096 4-121 (237)
64 PRK10529 DNA-binding transcrip 99.6 8.4E-14 1.8E-18 150.0 17.3 118 950-1096 2-119 (225)
65 PRK10816 DNA-binding transcrip 99.6 8.8E-14 1.9E-18 149.8 17.3 119 950-1096 1-119 (223)
66 PRK09836 DNA-binding transcrip 99.5 1.4E-13 3E-18 148.6 17.4 119 950-1096 1-119 (227)
67 PRK10766 DNA-binding transcrip 99.5 2.2E-13 4.8E-18 146.3 17.0 118 950-1096 3-120 (221)
68 PRK09468 ompR osmolarity respo 99.5 2.8E-13 6.2E-18 147.5 18.0 121 949-1097 5-125 (239)
69 COG3947 Response regulator con 99.5 3.1E-14 6.8E-19 151.8 9.7 117 950-1096 1-117 (361)
70 PRK10643 DNA-binding transcrip 99.5 3.3E-13 7.1E-18 144.5 17.8 119 950-1096 1-119 (222)
71 TIGR02154 PhoB phosphate regul 99.5 4.2E-13 9.2E-18 143.8 18.0 121 950-1096 3-123 (226)
72 PRK10161 transcriptional regul 99.5 3.4E-13 7.3E-18 145.8 17.3 121 950-1096 3-123 (229)
73 PRK10701 DNA-binding transcrip 99.5 4.1E-13 9E-18 146.5 17.2 117 951-1096 3-119 (240)
74 PRK13856 two-component respons 99.5 3.8E-13 8.3E-18 147.2 17.0 117 951-1096 3-120 (241)
75 PRK10430 DNA-binding transcrip 99.5 4E-13 8.6E-18 147.3 16.6 117 950-1092 2-120 (239)
76 PRK10336 DNA-binding transcrip 99.5 6.3E-13 1.4E-17 142.1 17.7 119 950-1096 1-119 (219)
77 TIGR02875 spore_0_A sporulatio 99.5 4.4E-13 9.5E-18 148.9 16.9 121 949-1095 2-124 (262)
78 PRK10955 DNA-binding transcrip 99.5 4.7E-13 1E-17 144.6 16.6 116 951-1096 3-118 (232)
79 PRK11517 transcriptional regul 99.5 7.5E-13 1.6E-17 142.1 17.3 118 950-1096 1-118 (223)
80 TIGR03787 marine_sort_RR prote 99.5 8.5E-13 1.8E-17 142.4 17.2 118 951-1096 2-121 (227)
81 PRK04184 DNA topoisomerase VI 99.5 2.9E-13 6.2E-18 160.8 13.0 117 533-686 30-154 (535)
82 PRK11083 DNA-binding response 99.4 1.7E-12 3.7E-17 139.5 16.8 119 950-1096 4-122 (228)
83 TIGR01387 cztR_silR_copR heavy 99.4 2E-12 4.3E-17 138.0 17.1 118 952-1097 1-118 (218)
84 PRK10840 transcriptional regul 99.4 1.9E-12 4E-17 139.6 16.6 120 949-1096 3-127 (216)
85 CHL00148 orf27 Ycf27; Reviewed 99.4 2.6E-12 5.7E-17 139.5 17.4 119 949-1096 6-124 (240)
86 PRK09958 DNA-binding transcrip 99.4 3E-12 6.5E-17 135.6 16.4 119 950-1096 1-120 (204)
87 PRK14084 two-component respons 99.4 2.9E-12 6.4E-17 140.7 16.2 116 950-1095 1-118 (246)
88 smart00387 HATPase_c Histidine 99.4 4.1E-12 8.8E-17 119.5 14.2 109 535-684 1-110 (111)
89 PRK10923 glnG nitrogen regulat 99.4 5E-12 1.1E-16 152.5 17.1 117 950-1094 4-120 (469)
90 PRK15115 response regulator Gl 99.4 4E-12 8.8E-17 152.2 16.0 120 949-1096 5-124 (444)
91 COG4567 Response regulator con 99.4 3.3E-12 7.2E-17 124.2 12.0 114 951-1092 11-124 (182)
92 PRK12555 chemotaxis-specific m 99.4 5.6E-12 1.2E-16 145.5 15.9 116 950-1094 1-129 (337)
93 PRK10360 DNA-binding transcrip 99.4 9E-12 1.9E-16 131.1 16.1 116 950-1096 2-119 (196)
94 PRK09483 response regulator; P 99.4 9.8E-12 2.1E-16 133.0 16.5 119 950-1096 2-122 (217)
95 PRK09935 transcriptional regul 99.4 1.5E-11 3.2E-16 130.5 17.2 119 950-1096 4-124 (210)
96 PRK10365 transcriptional regul 99.4 4.2E-12 9.1E-17 151.9 14.6 118 949-1094 5-122 (441)
97 PRK11361 acetoacetate metaboli 99.4 8.3E-12 1.8E-16 150.1 16.7 118 949-1094 4-121 (457)
98 PRK11697 putative two-componen 99.4 9.1E-12 2E-16 135.9 15.6 115 950-1095 2-118 (238)
99 PRK10710 DNA-binding transcrip 99.4 2.1E-11 4.5E-16 132.4 17.9 118 950-1096 11-128 (240)
100 TIGR02915 PEP_resp_reg putativ 99.3 8.1E-12 1.8E-16 149.7 15.7 113 952-1094 1-118 (445)
101 PRK15479 transcriptional regul 99.3 2.7E-11 5.8E-16 129.5 17.5 119 950-1096 1-119 (221)
102 TIGR01818 ntrC nitrogen regula 99.3 1.1E-11 2.5E-16 149.1 15.6 115 952-1094 1-115 (463)
103 PRK10100 DNA-binding transcrip 99.3 2.3E-11 5E-16 131.2 14.0 116 949-1096 10-128 (216)
104 PRK00742 chemotaxis-specific m 99.3 4.2E-11 9.1E-16 139.2 17.0 117 949-1094 3-132 (354)
105 COG2201 CheB Chemotaxis respon 99.3 3.1E-11 6.7E-16 135.8 15.0 116 950-1094 2-130 (350)
106 PRK09390 fixJ response regulat 99.3 3.5E-11 7.6E-16 125.9 14.2 120 949-1096 3-122 (202)
107 PF00512 HisKA: His Kinase A ( 99.3 1.6E-11 3.5E-16 107.3 9.7 67 422-488 1-68 (68)
108 PRK09581 pleD response regulat 99.3 8.2E-11 1.8E-15 140.5 17.5 118 951-1094 4-121 (457)
109 PRK11475 DNA-binding transcrip 99.2 6.5E-11 1.4E-15 126.8 13.7 108 962-1097 3-117 (207)
110 TIGR01052 top6b DNA topoisomer 99.2 3.7E-11 7.9E-16 141.6 12.5 106 533-678 22-134 (488)
111 PRK10610 chemotaxis regulatory 99.2 3.3E-10 7.1E-15 108.2 17.0 122 949-1096 5-127 (129)
112 PRK14868 DNA topoisomerase VI 99.2 6E-11 1.3E-15 143.4 14.3 128 515-683 21-160 (795)
113 PRK13435 response regulator; P 99.2 2.6E-10 5.7E-15 114.6 16.7 117 949-1097 5-123 (145)
114 PRK15369 two component system 99.2 4.2E-10 9.1E-15 118.4 16.7 120 949-1096 3-124 (211)
115 PRK13558 bacterio-opsin activa 99.2 1.3E-10 2.9E-15 146.3 14.9 117 950-1094 8-126 (665)
116 PRK10651 transcriptional regul 99.2 4.2E-10 9.2E-15 119.5 16.4 119 950-1096 7-127 (216)
117 PRK10403 transcriptional regul 99.2 4.4E-10 9.5E-15 119.2 16.3 118 950-1095 7-126 (215)
118 PRK14867 DNA topoisomerase VI 99.2 1.1E-10 2.3E-15 141.4 12.9 114 534-686 28-151 (659)
119 cd00075 HATPase_c Histidine ki 99.2 1.9E-10 4.2E-15 106.3 11.7 101 540-682 1-103 (103)
120 PRK15411 rcsA colanic acid cap 99.2 3.1E-10 6.7E-15 121.9 14.2 118 951-1097 2-125 (207)
121 COG3707 AmiR Response regulato 99.1 2.8E-10 6.1E-15 116.6 12.1 116 949-1093 5-121 (194)
122 COG0643 CheA Chemotaxis protei 99.1 1.6E-09 3.4E-14 134.2 19.3 141 500-686 393-575 (716)
123 PRK09191 two-component respons 99.1 1.6E-09 3.5E-14 120.0 16.0 117 950-1097 138-256 (261)
124 TIGR01925 spIIAB anti-sigma F 99.1 8.5E-10 1.8E-14 110.3 11.9 97 535-681 35-135 (137)
125 PRK10693 response regulator of 99.0 1E-09 2.2E-14 124.9 12.3 89 978-1094 2-91 (303)
126 COG4585 Signal transduction hi 99.0 2.2E-07 4.9E-12 108.6 30.6 123 503-684 243-365 (365)
127 PRK03660 anti-sigma F factor; 99.0 3.6E-09 7.8E-14 106.9 12.6 102 535-686 35-140 (146)
128 cd00156 REC Signal receiver do 98.9 1.3E-08 2.8E-13 92.9 13.1 112 953-1092 1-112 (113)
129 COG3851 UhpB Signal transducti 98.9 5.4E-07 1.2E-11 99.4 27.0 194 420-683 300-493 (497)
130 KOG0519 Sensory transduction h 98.9 2E-08 4.3E-13 127.3 18.2 390 411-853 374-783 (786)
131 COG2972 Predicted signal trans 98.8 1.7E-06 3.7E-11 104.2 29.2 185 423-685 259-453 (456)
132 COG3850 NarQ Signal transducti 98.8 1.7E-06 3.6E-11 100.8 25.2 185 428-683 374-567 (574)
133 PRK15029 arginine decarboxylas 98.8 4.5E-08 9.7E-13 121.9 13.5 108 950-1085 1-122 (755)
134 COG3920 Signal transduction hi 98.8 1.9E-06 4.1E-11 93.4 24.0 192 422-686 18-217 (221)
135 COG3279 LytT Response regulato 98.7 3.7E-08 8E-13 108.4 10.2 115 950-1094 2-118 (244)
136 COG4564 Signal transduction hi 98.7 2.4E-05 5.1E-10 85.8 30.1 186 435-686 263-449 (459)
137 PRK04069 serine-protein kinase 98.6 2.7E-07 5.9E-12 95.1 12.0 102 536-685 39-144 (161)
138 COG3275 LytS Putative regulato 98.4 2.9E-05 6.2E-10 89.3 23.1 130 494-686 414-553 (557)
139 smart00388 HisKA His Kinase A 98.4 9.9E-07 2.1E-11 75.0 8.3 64 423-487 2-65 (66)
140 KOG0787 Dehydrogenase kinase [ 98.4 1.4E-05 3.1E-10 89.4 18.8 202 440-684 153-380 (414)
141 PRK15426 putative diguanylate 98.4 6.4E-05 1.4E-09 93.2 26.2 72 202-277 220-294 (570)
142 TIGR01924 rsbW_low_gc serine-p 98.4 2.6E-06 5.7E-11 87.6 11.5 101 537-685 40-144 (159)
143 PF14501 HATPase_c_5: GHKL dom 98.2 1.4E-05 3.1E-10 75.5 12.0 92 536-682 2-97 (100)
144 PRK11107 hybrid sensory histid 98.2 9.4E-06 2E-10 106.3 14.7 118 946-1093 533-650 (919)
145 cd00082 HisKA Histidine Kinase 98.2 8.3E-06 1.8E-10 68.6 8.4 62 423-484 4-65 (65)
146 COG3706 PleD Response regulato 98.2 1.6E-06 3.4E-11 101.2 5.2 92 974-1095 13-104 (435)
147 PF02743 Cache_1: Cache domain 98.1 2.5E-06 5.5E-11 77.3 3.3 71 205-278 1-72 (81)
148 TIGR00585 mutl DNA mismatch re 97.8 9.1E-05 2E-09 84.8 11.5 97 538-681 21-125 (312)
149 COG1389 DNA topoisomerase VI, 97.7 0.00012 2.6E-09 83.9 8.7 115 535-688 32-154 (538)
150 PF13581 HATPase_c_2: Histidin 97.4 0.00077 1.7E-08 66.1 9.8 93 536-681 28-124 (125)
151 smart00448 REC cheY-homologous 96.7 0.0096 2.1E-07 46.0 8.3 54 951-1027 2-55 (55)
152 PF06490 FleQ: Flagellar regul 96.7 0.011 2.3E-07 57.0 9.6 106 951-1092 1-107 (109)
153 PRK00095 mutL DNA mismatch rep 96.4 0.013 2.8E-07 73.3 10.4 87 539-672 22-114 (617)
154 COG2172 RsbW Anti-sigma regula 96.1 0.042 9.2E-07 55.7 10.7 95 535-679 36-135 (146)
155 cd02071 MM_CoA_mut_B12_BD meth 95.1 0.49 1.1E-05 46.5 13.6 111 952-1090 2-121 (122)
156 PRK02261 methylaspartate mutas 95.0 0.39 8.5E-06 48.2 12.8 118 949-1094 3-135 (137)
157 PF13589 HATPase_c_3: Histidin 94.7 0.02 4.3E-07 57.4 2.6 66 612-682 35-105 (137)
158 TIGR00640 acid_CoA_mut_C methy 94.0 1.6 3.4E-05 43.7 14.3 112 956-1093 13-127 (132)
159 PRK05559 DNA topoisomerase IV 92.4 0.25 5.4E-06 62.0 7.1 83 536-661 34-131 (631)
160 TIGR01055 parE_Gneg DNA topois 91.9 0.21 4.5E-06 62.5 5.5 50 612-661 63-124 (625)
161 cd02067 B12-binding B12 bindin 91.7 2.2 4.8E-05 41.4 11.5 95 956-1078 10-109 (119)
162 PF00072 Response_reg: Respons 90.9 3.8 8.3E-05 38.3 12.2 109 704-850 2-111 (112)
163 PF03709 OKR_DC_1_N: Orn/Lys/A 90.2 1.4 3.1E-05 42.8 8.5 103 963-1093 7-112 (115)
164 TIGR03815 CpaE_hom_Actino heli 89.9 0.97 2.1E-05 52.1 8.4 85 973-1093 1-86 (322)
165 TIGR01059 gyrB DNA gyrase, B s 89.6 0.58 1.3E-05 59.1 6.6 82 536-660 27-123 (654)
166 COG4999 Uncharacterized domain 89.2 1.2 2.7E-05 42.7 6.8 113 946-1090 8-122 (140)
167 COG0745 OmpR Response regulato 88.8 4.8 0.0001 44.1 12.3 116 703-856 3-118 (229)
168 PRK05644 gyrB DNA gyrase subun 88.1 0.89 1.9E-05 57.1 6.8 82 536-660 34-130 (638)
169 PRK05218 heat shock protein 90 88.0 1.9 4E-05 54.2 9.5 57 612-672 74-142 (613)
170 PRK14083 HSP90 family protein; 87.1 0.71 1.5E-05 57.4 5.0 45 612-656 64-115 (601)
171 COG5381 Uncharacterized protei 84.9 1.9 4.2E-05 42.8 5.7 24 542-565 66-89 (184)
172 COG0323 MutL DNA mismatch repa 84.8 1.3 2.8E-05 55.7 5.7 27 612-638 54-80 (638)
173 TIGR01501 MthylAspMutase methy 84.4 14 0.00031 37.0 11.7 110 957-1094 13-133 (134)
174 cd02072 Glm_B12_BD B12 binding 84.3 18 0.00038 36.0 12.2 105 958-1090 12-127 (128)
175 PRK00208 thiG thiazole synthas 83.8 10 0.00022 41.7 11.3 91 967-1093 117-224 (250)
176 cd04728 ThiG Thiazole synthase 83.4 11 0.00023 41.5 11.2 100 957-1093 108-224 (248)
177 COG2185 Sbm Methylmalonyl-CoA 83.3 25 0.00054 35.5 12.8 120 949-1094 12-138 (143)
178 PF02310 B12-binding: B12 bind 82.3 9 0.00019 36.9 9.4 93 958-1079 13-112 (121)
179 PRK11677 hypothetical protein; 79.9 18 0.00039 36.2 10.5 78 380-473 8-85 (134)
180 PRK15399 lysine decarboxylase 78.6 16 0.00034 46.5 12.0 100 951-1080 2-107 (713)
181 PTZ00130 heat shock protein 90 77.9 3 6.5E-05 53.1 5.4 44 612-655 136-190 (814)
182 PRK15400 lysine decarboxylase 76.8 17 0.00036 46.3 11.5 81 951-1061 2-88 (714)
183 COG2204 AtoC Response regulato 76.8 21 0.00045 43.1 11.8 118 702-857 6-123 (464)
184 smart00433 TOP2c Topoisomerase 76.8 3 6.6E-05 52.1 5.1 48 612-659 34-93 (594)
185 cd02070 corrinoid_protein_B12- 76.1 21 0.00045 38.3 10.6 99 950-1077 83-190 (201)
186 PRK00043 thiE thiamine-phospha 75.0 38 0.00083 36.1 12.5 73 1016-1094 124-209 (212)
187 PTZ00272 heat shock protein 83 75.0 3.7 8.1E-05 52.0 5.2 20 612-631 73-92 (701)
188 cd02069 methionine_synthase_B1 74.1 27 0.00059 37.8 11.0 101 950-1078 89-201 (213)
189 PRK14939 gyrB DNA gyrase subun 73.2 2.8 6E-05 53.5 3.5 88 530-660 25-130 (756)
190 PRK09426 methylmalonyl-CoA mut 72.2 30 0.00065 44.3 12.3 117 950-1094 583-708 (714)
191 PRK15347 two component system 67.1 38 0.00082 44.7 12.3 120 701-854 691-810 (921)
192 COG3105 Uncharacterized protei 61.5 73 0.0016 31.4 9.6 16 458-473 75-90 (138)
193 PF06295 DUF1043: Protein of u 61.5 67 0.0015 31.9 9.9 19 455-473 63-81 (128)
194 PRK00278 trpC indole-3-glycero 61.5 1.4E+02 0.0031 33.4 13.7 96 953-1077 139-239 (260)
195 PRK10841 hybrid sensory kinase 60.9 66 0.0014 42.8 12.7 117 700-854 801-917 (924)
196 TIGR02956 TMAO_torS TMAO reduc 60.7 53 0.0011 43.7 11.9 121 700-855 702-822 (968)
197 PRK01130 N-acetylmannosamine-6 60.0 90 0.002 33.7 11.6 57 1016-1078 139-202 (221)
198 PRK11466 hybrid sensory histid 59.2 71 0.0015 42.2 12.7 120 699-855 680-799 (914)
199 PF05690 ThiG: Thiazole biosyn 58.0 85 0.0018 34.4 10.4 97 963-1090 113-221 (247)
200 TIGR00007 phosphoribosylformim 57.9 96 0.0021 33.7 11.5 56 1016-1077 158-217 (230)
201 TIGR02370 pyl_corrinoid methyl 57.7 44 0.00094 35.7 8.4 98 951-1077 86-192 (197)
202 PRK05458 guanosine 5'-monophos 56.8 1.4E+02 0.0031 34.6 12.8 98 951-1078 113-230 (326)
203 COG5385 Uncharacterized protei 56.5 2.5E+02 0.0054 29.1 17.4 185 426-673 18-204 (214)
204 cd04729 NanE N-acetylmannosami 55.0 1.4E+02 0.0031 32.1 12.1 43 1030-1078 164-206 (219)
205 PF10669 Phage_Gp23: Protein g 53.0 2E+02 0.0043 26.9 11.8 16 417-432 64-79 (121)
206 cd05212 NAD_bind_m-THF_DH_Cycl 51.7 49 0.0011 33.4 7.1 55 946-1028 25-83 (140)
207 PRK10558 alpha-dehydro-beta-de 50.8 1.7E+02 0.0036 32.8 11.9 73 1016-1092 40-113 (256)
208 PF03602 Cons_hypoth95: Conser 50.3 55 0.0012 34.6 7.6 67 950-1039 66-138 (183)
209 TIGR01334 modD putative molybd 50.0 58 0.0013 36.8 8.1 71 975-1076 191-261 (277)
210 CHL00162 thiG thiamin biosynth 49.9 1.5E+02 0.0033 32.9 10.8 105 957-1093 122-238 (267)
211 KOG2353 L-type voltage-depende 48.9 15 0.00032 48.8 3.6 80 199-278 422-510 (1104)
212 PRK13587 1-(5-phosphoribosyl)- 48.8 79 0.0017 34.8 8.9 55 1017-1077 163-220 (234)
213 PRK13111 trpA tryptophan synth 48.6 51 0.0011 36.9 7.4 60 1030-1094 75-140 (258)
214 PRK05703 flhF flagellar biosyn 48.4 1.5E+02 0.0033 35.7 11.8 111 948-1082 250-369 (424)
215 PF14827 Cache_3: Sensory doma 48.3 20 0.00043 34.7 3.7 42 199-245 73-114 (116)
216 KOG1979 DNA mismatch repair pr 48.1 26 0.00057 42.6 5.2 25 613-637 59-83 (694)
217 cd00331 IGPS Indole-3-glycerol 47.5 2.6E+02 0.0055 30.1 12.6 43 1031-1077 158-200 (217)
218 TIGR00736 nifR3_rel_arch TIM-b 47.4 85 0.0018 34.5 8.7 58 1015-1077 160-219 (231)
219 cd04726 KGPDC_HPS 3-Keto-L-gul 47.2 2.4E+02 0.0053 29.6 12.2 84 963-1077 93-185 (202)
220 cd00452 KDPG_aldolase KDPG and 46.9 75 0.0016 33.6 8.1 70 977-1078 102-171 (190)
221 TIGR01058 parE_Gpos DNA topois 46.5 15 0.00032 46.3 3.1 50 612-661 67-128 (637)
222 PRK11173 two-component respons 46.4 2.5E+02 0.0054 30.0 12.4 115 702-855 5-119 (237)
223 cd04723 HisA_HisF Phosphoribos 45.9 1.5E+02 0.0033 32.5 10.5 54 1018-1077 161-217 (233)
224 PRK09468 ompR osmolarity respo 45.9 2.9E+02 0.0062 29.4 12.8 117 701-855 6-122 (239)
225 PRK10529 DNA-binding transcrip 45.9 2.8E+02 0.0061 29.1 12.6 114 703-855 4-117 (225)
226 PF01596 Methyltransf_3: O-met 45.7 98 0.0021 33.4 8.8 58 949-1025 70-130 (205)
227 PRK10701 DNA-binding transcrip 45.6 2.7E+02 0.0059 29.7 12.6 114 703-855 4-117 (240)
228 COG3105 Uncharacterized protei 44.3 3E+02 0.0065 27.3 10.7 17 465-481 61-77 (138)
229 PRK11091 aerobic respiration c 44.1 1.7E+02 0.0038 37.9 12.5 121 699-855 524-644 (779)
230 TIGR01037 pyrD_sub1_fam dihydr 43.6 1.9E+02 0.0042 32.8 11.4 59 1032-1096 223-287 (300)
231 PRK10128 2-keto-3-deoxy-L-rham 43.4 2.8E+02 0.006 31.3 12.2 75 1016-1094 39-113 (267)
232 TIGR02154 PhoB phosphate regul 43.3 3.4E+02 0.0073 28.2 12.7 117 703-855 5-121 (226)
233 TIGR03239 GarL 2-dehydro-3-deo 43.0 1.9E+02 0.0041 32.2 10.8 72 1016-1091 33-105 (249)
234 PRK00748 1-(5-phosphoribosyl)- 42.4 97 0.0021 33.6 8.4 56 1016-1077 159-219 (233)
235 PRK10816 DNA-binding transcrip 42.3 3.6E+02 0.0078 28.2 12.7 115 703-855 3-117 (223)
236 cd04727 pdxS PdxS is a subunit 42.2 90 0.002 35.2 7.9 61 1030-1096 181-248 (283)
237 PF10090 DUF2328: Uncharacteri 41.9 4.5E+02 0.0097 27.8 19.3 170 439-671 2-174 (182)
238 TIGR00262 trpA tryptophan synt 41.5 83 0.0018 35.1 7.7 59 1030-1093 73-137 (256)
239 TIGR03151 enACPred_II putative 41.3 2.2E+02 0.0047 32.7 11.3 83 965-1077 101-189 (307)
240 PRK07896 nicotinate-nucleotide 41.3 1.1E+02 0.0023 34.9 8.5 72 975-1077 202-273 (289)
241 cd00564 TMP_TenI Thiamine mono 41.1 1.8E+02 0.0039 30.1 9.9 56 1016-1078 115-178 (196)
242 PF01408 GFO_IDH_MocA: Oxidore 40.6 2.9E+02 0.0063 26.1 10.6 46 1050-1095 65-112 (120)
243 PLN02591 tryptophan synthase 40.4 84 0.0018 35.0 7.5 59 1030-1094 65-129 (250)
244 PRK12724 flagellar biosynthesi 40.4 2.7E+02 0.0059 33.5 12.0 109 948-1081 251-370 (432)
245 PRK11889 flhF flagellar biosyn 40.0 3.1E+02 0.0068 32.9 12.2 113 948-1082 268-389 (436)
246 PRK05458 guanosine 5'-monophos 39.8 77 0.0017 36.7 7.2 54 1017-1076 112-166 (326)
247 PRK13125 trpA tryptophan synth 39.7 2.9E+02 0.0062 30.5 11.6 89 962-1079 118-215 (244)
248 PF10087 DUF2325: Uncharacteri 39.6 1.8E+02 0.0039 27.1 8.6 90 951-1068 1-93 (97)
249 PRK10161 transcriptional regul 39.5 3.8E+02 0.0083 28.2 12.5 117 703-855 5-121 (229)
250 PTZ00314 inosine-5'-monophosph 39.1 2.3E+02 0.0049 35.0 11.6 49 1023-1077 324-372 (495)
251 PRK11840 bifunctional sulfur c 39.0 3E+02 0.0065 31.8 11.6 104 956-1091 181-296 (326)
252 PRK10643 DNA-binding transcrip 38.9 4.3E+02 0.0093 27.3 12.6 73 779-855 45-117 (222)
253 TIGR00693 thiE thiamine-phosph 38.8 1.8E+02 0.004 30.5 9.6 56 1016-1077 116-179 (196)
254 TIGR01302 IMP_dehydrog inosine 38.6 2.7E+02 0.0059 33.8 12.1 100 948-1077 235-355 (450)
255 PRK09836 DNA-binding transcrip 38.6 4.2E+02 0.0091 27.8 12.6 74 778-855 44-117 (227)
256 COG0512 PabA Anthranilate/para 38.6 49 0.0011 35.1 4.9 95 950-1077 2-98 (191)
257 PF02254 TrkA_N: TrkA-N domain 38.4 2.7E+02 0.0058 26.3 9.9 93 949-1077 21-115 (116)
258 COG4566 TtrR Response regulato 38.0 2.7E+02 0.0059 29.7 10.1 116 702-855 6-121 (202)
259 PRK13856 two-component respons 37.9 4.4E+02 0.0096 28.2 12.8 114 703-855 4-118 (241)
260 cd04724 Tryptophan_synthase_al 37.3 1.2E+02 0.0026 33.5 8.1 58 1030-1093 63-126 (242)
261 PLN03029 type-a response regul 37.3 3.7E+02 0.008 29.0 11.9 138 701-854 9-146 (222)
262 cd02068 radical_SAM_B12_BD B12 37.1 2.9E+02 0.0063 26.8 10.1 105 960-1092 3-110 (127)
263 PLN03237 DNA topoisomerase 2; 37.0 46 0.001 45.4 5.5 54 612-665 112-177 (1465)
264 cd04730 NPD_like 2-Nitropropan 37.0 3.7E+02 0.0079 29.1 11.9 57 1016-1078 122-185 (236)
265 PRK11677 hypothetical protein; 36.6 4.4E+02 0.0095 26.5 11.0 77 372-448 4-85 (134)
266 TIGR02311 HpaI 2,4-dihydroxyhe 36.5 4.2E+02 0.0091 29.4 12.3 74 1016-1093 33-107 (249)
267 PRK10955 DNA-binding transcrip 36.3 3.9E+02 0.0085 28.0 11.9 113 703-855 4-116 (232)
268 PRK06096 molybdenum transport 36.1 1.3E+02 0.0028 34.2 8.1 72 975-1077 192-263 (284)
269 PRK12723 flagellar biosynthesi 35.8 3.9E+02 0.0085 31.8 12.4 109 949-1081 206-323 (388)
270 PRK07107 inosine 5-monophospha 35.3 1.6E+02 0.0035 36.3 9.4 105 948-1077 253-380 (502)
271 PRK09966 putative inner membra 35.0 5.6E+02 0.012 30.0 14.0 32 246-277 74-106 (407)
272 COG0784 CheY FOG: CheY-like re 35.0 3.9E+02 0.0085 25.1 12.6 115 700-851 5-121 (130)
273 cd02065 B12-binding_like B12 b 34.8 1.9E+02 0.0041 27.6 8.3 79 956-1061 10-92 (125)
274 TIGR00343 pyridoxal 5'-phospha 34.6 53 0.0012 37.0 4.7 59 1030-1094 184-249 (287)
275 PTZ00109 DNA gyrase subunit b; 34.2 5.2 0.00011 51.4 -3.6 15 613-627 163-177 (903)
276 PRK11359 cyclic-di-GMP phospho 33.9 1.9E+02 0.0042 37.3 10.6 102 964-1092 682-794 (799)
277 PRK10766 DNA-binding transcrip 33.9 4.9E+02 0.011 27.1 12.1 114 703-855 5-118 (221)
278 COG4122 Predicted O-methyltran 33.7 1.1E+02 0.0023 33.5 6.8 57 951-1028 86-144 (219)
279 COG0326 HtpG Molecular chapero 33.6 35 0.00076 42.4 3.4 47 612-658 75-132 (623)
280 PRK00811 spermidine synthase; 33.3 1.8E+02 0.0038 33.0 8.9 70 950-1043 101-182 (283)
281 PRK05567 inosine 5'-monophosph 33.2 4.4E+02 0.0094 32.4 12.8 43 1032-1077 317-359 (486)
282 PRK10046 dpiA two-component re 33.1 5.1E+02 0.011 27.7 12.2 73 779-855 51-123 (225)
283 KOG1977 DNA mismatch repair pr 33.0 71 0.0015 39.9 5.6 56 539-637 21-76 (1142)
284 PF07652 Flavi_DEAD: Flaviviru 33.0 1.3E+02 0.0028 30.8 6.6 88 948-1059 32-136 (148)
285 cd04732 HisA HisA. Phosphorib 33.0 3.9E+02 0.0085 28.8 11.3 54 1018-1077 162-218 (234)
286 PRK05848 nicotinate-nucleotide 32.8 3.5E+02 0.0076 30.6 10.9 71 976-1077 186-256 (273)
287 PRK07428 nicotinate-nucleotide 32.7 1.6E+02 0.0035 33.5 8.2 71 976-1077 200-270 (288)
288 PRK08385 nicotinate-nucleotide 32.6 3E+02 0.0066 31.2 10.4 97 951-1077 156-258 (278)
289 PRK11083 DNA-binding response 32.6 5.5E+02 0.012 26.6 12.3 73 779-855 48-120 (228)
290 PLN02274 inosine-5'-monophosph 32.6 4.8E+02 0.01 32.3 12.9 99 949-1077 260-379 (505)
291 PRK10923 glnG nitrogen regulat 32.4 4E+02 0.0087 32.2 12.4 116 702-855 5-120 (469)
292 PRK06731 flhF flagellar biosyn 32.3 4E+02 0.0086 30.1 11.3 111 949-1081 103-222 (270)
293 PRK14974 cell division protein 32.0 4.1E+02 0.009 30.9 11.6 112 949-1082 168-291 (336)
294 TIGR03787 marine_sort_RR prote 32.0 6.1E+02 0.013 26.5 12.5 115 703-855 3-119 (227)
295 TIGR01163 rpe ribulose-phospha 31.9 3.2E+02 0.0068 28.9 10.2 60 1017-1078 127-193 (210)
296 COG3437 Response regulator con 31.8 1.6E+02 0.0035 34.3 8.0 115 701-850 15-129 (360)
297 PRK12726 flagellar biosynthesi 31.5 5.5E+02 0.012 30.7 12.4 112 949-1082 234-354 (407)
298 COG2022 ThiG Uncharacterized e 31.4 3.7E+02 0.0079 29.6 10.0 85 963-1078 120-211 (262)
299 KOG1978 DNA mismatch repair pr 31.4 49 0.0011 41.2 4.1 24 612-635 51-74 (672)
300 PRK06543 nicotinate-nucleotide 31.4 3.8E+02 0.0083 30.4 10.8 68 976-1077 197-264 (281)
301 PLN02823 spermine synthase 31.2 1.7E+02 0.0036 34.1 8.3 55 950-1028 128-188 (336)
302 TIGR00735 hisF imidazoleglycer 31.1 4.1E+02 0.0088 29.5 11.1 52 1032-1089 188-246 (254)
303 PRK09483 response regulator; P 30.4 6.3E+02 0.014 26.1 12.6 75 778-856 47-121 (217)
304 TIGR01818 ntrC nitrogen regula 30.3 3.6E+02 0.0078 32.5 11.5 112 705-854 3-114 (463)
305 PRK10336 DNA-binding transcrip 30.2 6.3E+02 0.014 26.0 12.8 74 778-855 44-117 (219)
306 TIGR00734 hisAF_rel hisA/hisF 30.2 1.3E+02 0.0029 32.7 6.9 55 1017-1077 155-212 (221)
307 PRK08883 ribulose-phosphate 3- 30.2 1.8E+02 0.004 31.6 7.9 107 965-1094 98-216 (220)
308 PHA02569 39 DNA topoisomerase 30.1 26 0.00057 43.9 1.6 52 612-663 80-145 (602)
309 PRK01130 N-acetylmannosamine-6 30.0 1.4E+02 0.0031 32.2 7.1 55 1031-1091 44-116 (221)
310 TIGR01163 rpe ribulose-phospha 30.0 2.2E+02 0.0049 30.1 8.6 55 1030-1090 43-98 (210)
311 PRK04180 pyridoxal biosynthesi 29.7 80 0.0017 35.7 5.1 59 1030-1094 190-255 (293)
312 PRK15041 methyl-accepting chem 29.6 1.1E+03 0.024 29.3 15.8 16 390-405 212-227 (554)
313 CHL00200 trpA tryptophan synth 29.4 1.5E+02 0.0033 33.2 7.4 57 1030-1092 78-140 (263)
314 PRK03958 tRNA 2'-O-methylase; 29.4 7E+02 0.015 26.3 12.4 88 950-1066 32-121 (176)
315 COG2197 CitB Response regulato 29.4 6.3E+02 0.014 27.1 11.9 77 777-857 45-121 (211)
316 TIGR02875 spore_0_A sporulatio 29.0 7.7E+02 0.017 26.8 13.0 76 778-855 48-123 (262)
317 PF02581 TMP-TENI: Thiamine mo 29.0 2.9E+02 0.0064 28.8 9.1 82 964-1076 87-175 (180)
318 PLN02617 imidazole glycerol ph 28.9 4.3E+02 0.0092 33.0 11.6 69 1017-1091 453-531 (538)
319 TIGR00566 trpG_papA glutamine 28.0 1.3E+02 0.0029 31.7 6.3 32 952-983 2-33 (188)
320 cd02940 DHPD_FMN Dihydropyrimi 27.8 2.6E+02 0.0056 31.9 9.0 42 1032-1077 239-280 (299)
321 PRK07695 transcriptional regul 27.8 4.2E+02 0.0092 28.0 10.2 53 1016-1075 115-174 (201)
322 TIGR01387 cztR_silR_copR heavy 27.7 6.7E+02 0.015 25.7 11.8 74 778-855 42-115 (218)
323 cd00429 RPE Ribulose-5-phospha 27.6 4.3E+02 0.0094 27.8 10.3 59 1017-1077 128-193 (211)
324 cd00381 IMPDH IMPDH: The catal 27.2 5.6E+02 0.012 29.6 11.7 29 1049-1077 197-225 (325)
325 cd01573 modD_like ModD; Quinol 27.0 2.3E+02 0.005 31.9 8.3 71 976-1077 187-257 (272)
326 PRK09959 hybrid sensory histid 26.9 3.7E+02 0.0079 36.8 11.9 116 701-854 959-1074(1197)
327 PRK06843 inosine 5-monophospha 26.8 5.9E+02 0.013 30.5 11.9 102 948-1077 164-284 (404)
328 COG0313 Predicted methyltransf 26.8 1.9E+02 0.0041 32.5 7.3 83 947-1059 28-116 (275)
329 PRK13566 anthranilate synthase 26.5 1.8E+02 0.0039 37.5 8.1 39 945-983 522-560 (720)
330 cd02809 alpha_hydroxyacid_oxid 26.5 5.5E+02 0.012 29.2 11.4 58 1016-1077 193-255 (299)
331 PRK05581 ribulose-phosphate 3- 26.3 6.9E+02 0.015 26.6 11.7 74 1016-1092 131-217 (220)
332 PTZ00108 DNA topoisomerase 2-l 25.9 63 0.0014 44.2 4.1 51 612-662 95-157 (1388)
333 PRK12704 phosphodiesterase; Pr 25.7 55 0.0012 40.4 3.3 44 1051-1094 251-296 (520)
334 PRK05742 nicotinate-nucleotide 25.5 3E+02 0.0065 31.2 8.8 69 975-1077 192-260 (277)
335 cd01572 QPRTase Quinolinate ph 25.5 1.5E+02 0.0032 33.4 6.4 64 1033-1102 170-233 (268)
336 PF15086 UPF0542: Uncharacteri 25.4 4.9E+02 0.011 23.3 7.9 25 372-396 24-48 (74)
337 TIGR01304 IMP_DH_rel_2 IMP deh 25.0 2.9E+02 0.0064 32.6 8.9 29 1049-1077 255-283 (369)
338 PRK09958 DNA-binding transcrip 24.9 7.5E+02 0.016 25.2 12.2 74 779-856 46-119 (204)
339 TIGR00078 nadC nicotinate-nucl 24.9 2.4E+02 0.0052 31.7 7.9 91 951-1075 157-247 (265)
340 PRK07259 dihydroorotate dehydr 24.8 5.9E+02 0.013 28.9 11.3 60 1031-1096 222-287 (301)
341 PRK15115 response regulator Gl 24.8 4.6E+02 0.0099 31.4 11.0 117 701-855 6-122 (444)
342 PF14097 SpoVAE: Stage V sporu 24.7 6.2E+02 0.013 26.5 9.8 70 952-1041 3-80 (180)
343 PF06388 DUF1075: Protein of u 24.6 2.1E+02 0.0046 29.1 6.5 24 374-397 95-118 (146)
344 PRK10669 putative cation:proto 24.6 5.9E+02 0.013 31.7 12.1 71 1015-1096 480-550 (558)
345 CHL00148 orf27 Ycf27; Reviewed 24.5 8.3E+02 0.018 25.6 13.2 72 779-855 51-122 (240)
346 smart00052 EAL Putative diguan 24.5 2.8E+02 0.006 29.6 8.2 93 964-1083 137-240 (241)
347 PF01729 QRPTase_C: Quinolinat 24.5 2.3E+02 0.005 29.6 7.1 72 975-1077 83-154 (169)
348 PTZ00170 D-ribulose-5-phosphat 24.4 2.2E+02 0.0049 31.1 7.4 108 964-1094 105-222 (228)
349 COG3290 CitA Signal transducti 24.3 90 0.0019 38.2 4.5 35 215-252 136-170 (537)
350 cd01568 QPRTase_NadC Quinolina 24.2 2.5E+02 0.0054 31.6 7.9 71 975-1077 184-254 (269)
351 COG0742 N6-adenine-specific me 24.1 1.4E+02 0.003 31.8 5.4 53 950-1024 67-122 (187)
352 TIGR03088 stp2 sugar transfera 24.0 5E+02 0.011 29.8 10.9 108 949-1095 229-338 (374)
353 TIGR00417 speE spermidine synt 24.0 4.1E+02 0.0089 29.7 9.6 70 950-1043 97-177 (270)
354 PRK11361 acetoacetate metaboli 23.9 6.2E+02 0.014 30.3 12.0 115 702-854 6-120 (457)
355 cd00331 IGPS Indole-3-glycerol 23.9 2.7E+02 0.006 29.8 8.0 67 1019-1091 48-116 (217)
356 PRK04457 spermidine synthase; 23.8 5.2E+02 0.011 28.9 10.3 71 949-1043 90-168 (262)
357 cd04722 TIM_phosphate_binding 23.6 4.7E+02 0.01 26.5 9.6 56 1016-1077 136-198 (200)
358 PRK05637 anthranilate synthase 23.5 2.2E+02 0.0048 30.7 7.0 34 950-983 2-35 (208)
359 PLN02871 UDP-sulfoquinovose:DA 23.4 7.5E+02 0.016 29.8 12.5 106 949-1095 290-400 (465)
360 cd04741 DHOD_1A_like Dihydroor 23.3 1.3E+02 0.0028 34.3 5.5 40 1033-1076 231-270 (294)
361 COG0134 TrpC Indole-3-glycerol 23.3 6.9E+02 0.015 28.0 10.7 84 966-1078 149-236 (254)
362 PRK11517 transcriptional regul 23.3 8.4E+02 0.018 25.2 12.5 73 778-855 44-116 (223)
363 PRK05749 3-deoxy-D-manno-octul 23.2 6.7E+02 0.014 29.7 11.9 108 949-1095 262-388 (425)
364 PRK07649 para-aminobenzoate/an 23.2 95 0.0021 33.1 4.1 38 952-989 2-39 (195)
365 PRK10365 transcriptional regul 23.1 4.5E+02 0.0098 31.3 10.5 117 701-855 6-122 (441)
366 cd02810 DHOD_DHPD_FMN Dihydroo 23.0 3.2E+02 0.0068 30.8 8.6 41 1032-1076 230-270 (289)
367 TIGR00064 ftsY signal recognit 22.8 5.7E+02 0.012 28.7 10.4 112 948-1081 99-228 (272)
368 PF06305 DUF1049: Protein of u 22.1 4.6E+02 0.01 22.4 7.5 16 378-393 24-39 (68)
369 PF08348 PAS_6: YheO-like PAS 21.8 89 0.0019 30.6 3.2 71 171-251 39-113 (118)
370 PRK08649 inosine 5-monophospha 21.7 4.3E+02 0.0093 31.2 9.4 90 963-1077 177-284 (368)
371 PRK08649 inosine 5-monophospha 21.7 7.9E+02 0.017 29.1 11.6 55 1015-1077 153-214 (368)
372 TIGR01302 IMP_dehydrog inosine 21.6 2.8E+02 0.006 33.7 8.1 55 1016-1076 236-291 (450)
373 PF00977 His_biosynth: Histidi 21.6 3.6E+02 0.0078 29.4 8.4 55 1017-1077 162-219 (229)
374 PF07568 HisKA_2: Histidine ki 21.5 5.8E+02 0.013 22.7 8.6 72 430-511 2-73 (76)
375 PRK02083 imidazole glycerol ph 21.4 3.6E+02 0.0078 29.8 8.5 69 1016-1090 166-245 (253)
376 TIGR01306 GMP_reduct_2 guanosi 21.3 1.3E+03 0.028 26.8 12.9 42 1031-1078 186-227 (321)
377 PRK10415 tRNA-dihydrouridine s 21.0 5E+02 0.011 30.0 9.7 40 1032-1077 183-223 (321)
378 PRK06106 nicotinate-nucleotide 21.0 3.4E+02 0.0074 30.8 8.1 68 976-1077 198-265 (281)
379 PRK14722 flhF flagellar biosyn 21.0 6.3E+02 0.014 29.9 10.6 93 950-1066 168-264 (374)
380 PLN02589 caffeoyl-CoA O-methyl 21.0 4.2E+02 0.0091 29.5 8.7 58 950-1025 105-165 (247)
381 PRK01033 imidazole glycerol ph 20.8 2.5E+02 0.0054 31.3 7.0 54 1018-1077 168-225 (258)
382 cd04731 HisF The cyclase subun 20.8 4.2E+02 0.0092 28.9 8.8 56 1016-1077 40-99 (243)
383 PRK06978 nicotinate-nucleotide 20.7 3.3E+02 0.0072 31.1 7.9 68 976-1077 209-276 (294)
384 TIGR01305 GMP_reduct_1 guanosi 20.6 5.9E+02 0.013 29.7 9.8 84 970-1077 93-177 (343)
385 PRK08745 ribulose-phosphate 3- 20.5 5.2E+02 0.011 28.3 9.2 106 965-1093 102-219 (223)
386 TIGR03128 RuMP_HxlA 3-hexulose 20.5 1E+03 0.022 25.1 14.3 95 963-1090 92-203 (206)
387 PF09936 Methyltrn_RNA_4: SAM- 20.4 6.1E+02 0.013 26.9 9.0 103 950-1081 43-161 (185)
388 PRK08072 nicotinate-nucleotide 20.2 2.1E+02 0.0046 32.4 6.3 55 1032-1092 175-229 (277)
389 TIGR00262 trpA tryptophan synt 20.2 1E+03 0.022 26.5 11.6 43 1031-1079 186-228 (256)
390 PRK10840 transcriptional regul 20.1 1E+03 0.022 25.0 12.5 74 779-856 50-126 (216)
391 cd01748 GATase1_IGP_Synthase T 20.1 3E+02 0.0065 29.1 7.2 32 952-983 1-32 (198)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=6.1e-59 Score=595.32 Aligned_cols=484 Identities=26% Similarity=0.413 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001298 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492 (1105)
Q Consensus 413 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l 492 (1105)
+++++++++.|++|+++|||||||||++|.|++++|.. ...++++.+++..|..++.+|.++|+++||++|++++.+.+
T Consensus 437 ~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~-~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l 515 (924)
T PRK10841 437 AQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQT-KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKI 515 (924)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 34456677889999999999999999999999999864 44677888899999999999999999999999999999999
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~ 572 (1105)
+.++|++.+++++++..+...+..|++.+.+.++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.+.+...
T Consensus 516 ~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~----- 590 (924)
T PRK10841 516 EPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD----- 590 (924)
T ss_pred eeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe-----
Confidence 999999999999999999999999999999988888777899999999999999999999999999988765321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
...+.|+|.|||+||+++.+++||+|||+.+.+..+..+|+||||
T Consensus 591 -----------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL 635 (924)
T PRK10841 591 -----------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGL 635 (924)
T ss_pred -----------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhH
Confidence 124789999999999999999999999998876667778999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 732 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 732 (1105)
+||++||++|||+|+++|.+|+||+|+|.||+...............+..+.+..........+..|+..+|..+.....
T Consensus 636 ~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~ 715 (924)
T PRK10841 636 AICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEG 715 (924)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEccc
Confidence 99999999999999999999999999999998644332222233445666777777777778888999998876543321
Q ss_pred chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298 733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 812 (1105)
Q Consensus 733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 812 (1105)
... .+..+++.|..... .. . .. ...
T Consensus 716 ~~~-----------------------------------------~~~d~~i~d~~~~~-~~-~----~~--------~~~ 740 (924)
T PRK10841 716 QEP-----------------------------------------TPEDVLITDDPVQK-KW-Q----GR--------AVI 740 (924)
T ss_pred ccC-----------------------------------------CcCcEEEEcCcccc-cc-c----hh--------hhh
Confidence 000 00112222210000 00 0 00 000
Q ss_pred EEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhcc
Q 001298 813 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 892 (1105)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1105)
.+...+... + ..........+|.....+...+..........
T Consensus 741 ~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------------------------------- 782 (924)
T PRK10841 741 TFCRRHIGI-P-----LEIAPGEWVHSTATPHELPALLARIYRIELES-------------------------------- 782 (924)
T ss_pred hhhhccccC-h-----hhcccCceeeccCChHHHHHHHHHHhhccccc--------------------------------
Confidence 000000000 0 00001112223333333333322221100000
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 001298 893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972 (1105)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~ 972 (1105)
+ ... ..............+++||||||++.++..+..+|++.
T Consensus 783 -----------~----------------------~~~-----~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~ 824 (924)
T PRK10841 783 -----------D----------------------DSA-----NALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSL 824 (924)
T ss_pred -----------c----------------------ccc-----ccccccccccccCCCCEEEEECCCHHHHHHHHHHHHHc
Confidence 0 000 00000000011124679999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus 973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
||.|..+.||.+|++.+.. .+||+||||++||.|||+|++++||+.. ..+||
T Consensus 825 G~~v~~a~~g~eal~~l~~-----------------------~~~DlVl~D~~mP~mdG~el~~~ir~~~-----~~~pI 876 (924)
T PRK10841 825 GYQCKTANDGVDALNVLSK-----------------------NHIDIVLTDVNMPNMDGYRLTQRLRQLG-----LTLPV 876 (924)
T ss_pred CCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence 9999999999999999864 4799999999999999999999999753 35899
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|++|++...++..+|+++|||+||.||++.++|...|.++....
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887644
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=3.6e-58 Score=595.31 Aligned_cols=503 Identities=31% Similarity=0.463 Sum_probs=400.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001298 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493 (1105)
Q Consensus 414 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~ 493 (1105)
++++++++.|++|+++|||||||||++|+|+++++... ..++++++++..|.+++.+|..+|+++++++|+|.+++.++
T Consensus 284 ~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 284 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT-PLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 44566777889999999999999999999999988654 46788889999999999999999999999999999999999
Q ss_pred ceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCC
Q 001298 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSK 573 (1105)
Q Consensus 494 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~ 573 (1105)
..+|++.+++++++..+...+.+|++.+.+++++..|..+.+|+.+|+|||.||++||+|||+.|.|.+.+....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~----- 437 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRA----- 437 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEe-----
Confidence 999999999999999999999999999999998888778999999999999999999999999998877654321
Q ss_pred CCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHH
Q 001298 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653 (1105)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLa 653 (1105)
..++...+.|+|.|+|+|||++.+++||+|||+++.+.+++.+|+||||+
T Consensus 438 ------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~ 487 (919)
T PRK11107 438 ------------------------------LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLV 487 (919)
T ss_pred ------------------------------cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHH
Confidence 11223458899999999999999999999999999888888899999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc--ccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecc
Q 001298 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ--IYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 731 (1105)
Q Consensus 654 Ivk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~--~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 731 (1105)
|||++++.|||+|+++|.+|+||+|+|.||+........ .....+.+..+++.+.....+..+..++...|..+...+
T Consensus 488 i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~ 567 (919)
T PRK11107 488 ITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSP 567 (919)
T ss_pred HHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999999999999999999865432211 112234577888899999999999999999998776554
Q ss_pred cchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhH-HHHHhhhhhhhhccc
Q 001298 732 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDL-WREQLNSLDIFHRKA 810 (1105)
Q Consensus 732 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~-~~e~~~~~~~~~~~~ 810 (1105)
....+ ...++.++++|..+++..+.. ..+..+.. ....
T Consensus 568 ~~~~l--------------------------------------~~~~~d~il~~~~~~~~~~~~~~~~~~~~~---~~~~ 606 (919)
T PRK11107 568 TLSQL--------------------------------------PEAHYDILLLGLPVTFREPLTMLHERLAKA---KSMT 606 (919)
T ss_pred CHHHh--------------------------------------ccCCCCEEEecccCCCCCCHHHHHHHHHhh---hhcC
Confidence 32220 012344666676666544322 22222211 1111
Q ss_pred eeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchh
Q 001298 811 MFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQ 890 (1105)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1105)
....+..............+.|...++.||+....+...+........
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~-------------------------------- 654 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQ-------------------------------- 654 (919)
T ss_pred CcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccc--------------------------------
Confidence 122222222333344556677888899999999888877654321000
Q ss_pred cccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHH
Q 001298 891 KFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILE 970 (1105)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~ 970 (1105)
+ .. .........+++||||||++.++..++.+|+
T Consensus 655 -------------~-~~--------------------------------~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~ 688 (919)
T PRK11107 655 -------------P-PL--------------------------------LPPTDESRLPLTVMAVDDNPANLKLIGALLE 688 (919)
T ss_pred -------------c-cc--------------------------------ccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 0 00 0000011234799999999999999999999
Q ss_pred hcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCc
Q 001298 971 KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNI 1050 (1105)
Q Consensus 971 ~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~i 1050 (1105)
..|+.|..+.||.+|++.+.. .+||+||||+.||+|||+++++.||+... .+++
T Consensus 689 ~~~~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~lr~~~~---~~~~ 742 (919)
T PRK11107 689 EQVEHVVLCDSGHQAVEQAKQ-----------------------RPFDLILMDIQMPGMDGIRACELIRQLPH---NQNT 742 (919)
T ss_pred HcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCcHHHHHHHHHhccc---CCCC
Confidence 999999999999999998863 47999999999999999999999998643 2569
Q ss_pred ceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1051 PIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1051 pIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|||++|++...+...+|+++||++||.||++.++|...|.++.....
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 789 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGPK 789 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999876543
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=5.6e-56 Score=575.02 Aligned_cols=424 Identities=31% Similarity=0.494 Sum_probs=325.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001298 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492 (1105)
Q Consensus 413 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l 492 (1105)
+++++.++..|++|++++||||||||++|+|++++|.. ...++++++.+..|..++.+|..+++++|+++|+|.+++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 466 (921)
T PRK15347 388 KQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQN-TPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTL 466 (921)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34556667788999999999999999999999999875 44678888999999999999999999999999999999999
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~ 572 (1105)
..+++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+|||.|||+||+|||++|.|.|++...
T Consensus 467 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~----- 541 (921)
T PRK15347 467 SLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH----- 541 (921)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc-----
Confidence 999999999999999999999999999999988888888899999999999999999999999999988875321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
...+.|+|.|||+||+++.+++||+||+|.+. ..+|+||||
T Consensus 542 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 582 (921)
T PRK15347 542 -----------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGL 582 (921)
T ss_pred -----------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHH
Confidence 12478999999999999999999999998764 246999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 732 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 732 (1105)
+|||+++++|||+|+++|++|+||+|+|.||+........ ..+.. .....+..++..+|........
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 649 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----LKGEL--------SAPLALHRQLSAWGITCQPGHQ 649 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----ccccc--------cchHHHHHHHHHcCCccccccc
Confidence 9999999999999999999999999999999854211100 00000 0001111112111111000000
Q ss_pred chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298 733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 812 (1105)
Q Consensus 733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 812 (1105)
.. ..
T Consensus 650 ~~-----------------------------~~----------------------------------------------- 653 (921)
T PRK15347 650 NP-----------------------------AL----------------------------------------------- 653 (921)
T ss_pred ch-----------------------------hh-----------------------------------------------
Confidence 00 00
Q ss_pred EEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhcc
Q 001298 813 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 892 (1105)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1105)
..+ + .+..+.++...+.......
T Consensus 654 --------~~~---~-----------~~~~~~~~~~~~~~~~~~~----------------------------------- 676 (921)
T PRK15347 654 --------LDP---E-----------LAYLPGRLYDLLQQIIQGA----------------------------------- 676 (921)
T ss_pred --------cch---h-----------hhhcchHHHHHHHHHhhcC-----------------------------------
Confidence 000 0 0000011111111100000
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 001298 893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972 (1105)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~ 972 (1105)
+. .+.. .......+++||||||++.++..+..+|+..
T Consensus 677 -----------~~--------------------------~~~~------~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~ 713 (921)
T PRK15347 677 -----------PN--------------------------EPVI------NLPLQPWQLQILLVDDVETNRDIIGMMLVEL 713 (921)
T ss_pred -----------CC--------------------------cccc------cCCCCcccCCEEEEeCCHHHHHHHHHHHHHc
Confidence 00 0000 0000123468999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus 973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
|++|..|.||.+|++.+.. .+||+||||++||+|||++++++||+.+.. ..+++||
T Consensus 714 g~~v~~a~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~G~~~~~~ir~~~~~-~~~~~pi 769 (921)
T PRK15347 714 GQQVTTAASGTEALELGRQ-----------------------HRFDLVLMDIRMPGLDGLETTQLWRDDPNN-LDPDCMI 769 (921)
T ss_pred CCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhchhh-cCCCCcE
Confidence 9999999999999998853 479999999999999999999999975432 1256999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|++|++...+...+|+++||++||.||++.++|..++.++..
T Consensus 770 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 770 VALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987764
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=2.5e-53 Score=553.12 Aligned_cols=370 Identities=34% Similarity=0.570 Sum_probs=321.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001298 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492 (1105)
Q Consensus 413 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l 492 (1105)
+++++++++.|++|+++|||||||||++|.|++++|.+ ...++++++++..|.+++.+|..+++++|+++|+|.+++.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~ 532 (968)
T TIGR02956 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGD-TGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSI 532 (968)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 34456677789999999999999999999999999864 44678888999999999999999999999999999999999
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~ 572 (1105)
+.++|++.+++++++..+...+..+++.+.++++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 533 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~----- 607 (968)
T TIGR02956 533 SPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLN----- 607 (968)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEc-----
Confidence 999999999999999999999999999999999877787899999999999999999999999999988775321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
++ ..++|+|.|+|+|||++.+++||+|||+.+ ..+..+|+||||
T Consensus 608 ---------------------------------~~-~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 608 ---------------------------------DD-SSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred ---------------------------------CC-CeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 01 117899999999999999999999999988 345568999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 732 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 732 (1105)
+|||++|+.|||+|.++|.+|+||+|+|.||+.........
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~--------------------------------------- 692 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDS--------------------------------------- 692 (968)
T ss_pred HHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccc---------------------------------------
Confidence 99999999999999999999999999999997531100000
Q ss_pred chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298 733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 812 (1105)
Q Consensus 733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 812 (1105)
T Consensus 693 -------------------------------------------------------------------------------- 692 (968)
T TIGR02956 693 -------------------------------------------------------------------------------- 692 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhcc
Q 001298 813 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 892 (1105)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1105)
..
T Consensus 693 ------~~------------------------------------------------------------------------ 694 (968)
T TIGR02956 693 ------AT------------------------------------------------------------------------ 694 (968)
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 001298 893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972 (1105)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~ 972 (1105)
.......+.+||||||++.++..+..+|+..
T Consensus 695 -------------------------------------------------~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~ 725 (968)
T TIGR02956 695 -------------------------------------------------LTVIDLPPQRVLLVEDNEVNQMVAQGFLTRL 725 (968)
T ss_pred -------------------------------------------------cccccccccceEEEcCcHHHHHHHHHHHHHc
Confidence 0000012348999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus 973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
||.|..+.||.+|++.+.. .+||+||||++||+|||+++++.||+..... .++||
T Consensus 726 g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~--~~~pi 780 (968)
T TIGR02956 726 GHKVTLAESGQSALECFHQ-----------------------HAFDLALLDINLPDGDGVTLLQQLRAIYGAK--NEVKF 780 (968)
T ss_pred CCEEEEECCHHHHHHHHHC-----------------------CCCCEEEECCCCCCCCHHHHHHHHHhCcccc--CCCeE
Confidence 9999999999999999863 4799999999999999999999999864321 23899
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|++|++...+...+|+++||++||.||++.++|...|.+++..
T Consensus 781 i~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 781 IAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998854
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.6e-52 Score=533.34 Aligned_cols=370 Identities=33% Similarity=0.526 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001298 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494 (1105)
Q Consensus 415 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~ 494 (1105)
+.+.+++.|++|+++|||||||||++|.|++++|.. ...++++++++..|..++.+|..+++++++++|++.+++.+..
T Consensus 275 ~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~-~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 353 (779)
T PRK11091 275 ALEKASRDKTTFISTISHELRTPLNGIVGLSRILLD-TELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDN 353 (779)
T ss_pred HHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEe
Confidence 344556678999999999999999999999999864 4467888899999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCC
Q 001298 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 495 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~ 574 (1105)
.++++.++++++...+...+..+++.+.++.+++.|..+.+|+.+|+|||.||++||+||+++|.|.+.+...
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~------- 426 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYE------- 426 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEc-------
Confidence 9999999999999999999999999999998888777799999999999999999999999999988875321
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccC-CCCCCCCCCCccchHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQG-DPSTTRKHGGTGLGLS 653 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~-~~s~~~~~~GtGLGLa 653 (1105)
....+.|+|.|+|+|||++.+++||+|||+. +.+.++..+|+||||+
T Consensus 427 --------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 427 --------------------------------EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred --------------------------------cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 0123789999999999999999999999998 5555566789999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecccc
Q 001298 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEW 733 (1105)
Q Consensus 654 Ivk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~ 733 (1105)
|||+||+.|||+|+++|.+|+||+|+|+||+........
T Consensus 475 i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~----------------------------------------- 513 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVE----------------------------------------- 513 (779)
T ss_pred HHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccc-----------------------------------------
Confidence 999999999999999999999999999999743110000
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeE
Q 001298 734 HGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFA 813 (1105)
Q Consensus 734 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~ 813 (1105)
T Consensus 514 -------------------------------------------------------------------------------- 513 (779)
T PRK11091 514 -------------------------------------------------------------------------------- 513 (779)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhccc
Q 001298 814 WVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFR 893 (1105)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1105)
.. | .
T Consensus 514 ------~~------------------~---------------------~------------------------------- 517 (779)
T PRK11091 514 ------DA------------------F---------------------D------------------------------- 517 (779)
T ss_pred ------cc------------------c---------------------c-------------------------------
Confidence 00 0 0
Q ss_pred ccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcC
Q 001298 894 KCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVG 973 (1105)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g 973 (1105)
.......+.+||||||++.++..+..+|+..|
T Consensus 518 ------------------------------------------------~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g 549 (779)
T PRK11091 518 ------------------------------------------------EDDMPLPALNILLVEDIELNVIVARSVLEKLG 549 (779)
T ss_pred ------------------------------------------------cccccccccceEEEcCCHHHHHHHHHHHHHcC
Confidence 00000124689999999999999999999999
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCC-cce
Q 001298 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARN-IPI 1052 (1105)
Q Consensus 974 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~-ipI 1052 (1105)
+.|..+.||.+|++.+.. .+||+||||++||+|||++++++||+..+. .+ +||
T Consensus 550 ~~v~~a~~~~eal~~~~~-----------------------~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~---~~~~~i 603 (779)
T PRK11091 550 NSVDVAMTGKEALEMFDP-----------------------DEYDLVLLDIQLPDMTGLDIARELRERYPR---EDLPPL 603 (779)
T ss_pred CEEEEECCHHHHHHHhhc-----------------------CCCCEEEEcCCCCCCCHHHHHHHHHhcccc---CCCCcE
Confidence 999999999999998853 479999999999999999999999976421 34 499
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|++|++... +..+|+++||++||.||++.++|..+|.+++...
T Consensus 604 i~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 604 VALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 999998764 4678999999999999999999999999988544
No 6
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2.3e-51 Score=531.57 Aligned_cols=364 Identities=32% Similarity=0.535 Sum_probs=315.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ccc
Q 001298 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK--MEL 492 (1105)
Q Consensus 415 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~--~~l 492 (1105)
++++..+.|++|+++|||||||||++|.|++++|... ..++++++++..|..++.+|..++++++++++++.+. +.+
T Consensus 436 ~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~ 514 (914)
T PRK11466 436 EAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN-PALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSV 514 (914)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccee
Confidence 3455667889999999999999999999999998754 4567888899999999999999999999999999884 567
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~ 572 (1105)
+.++|++.+++++++..+...+..|++.+.+++++..|..+.+|+.+|+|||.|||+||+||++.|.|.|.+...
T Consensus 515 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~----- 589 (914)
T PRK11466 515 SDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD----- 589 (914)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-----
Confidence 778999999999999999999999999999998887787899999999999999999999999999988765321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
...+.|+|.|+|+|||++.++++|+||++.+. +.+|+||||
T Consensus 590 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL 630 (914)
T PRK11466 590 -----------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGL 630 (914)
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccH
Confidence 12477999999999999999999999998642 357999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeeccc
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSE 732 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~ 732 (1105)
+|||++++.|||+|.++|.+|+||+|+|.||+.........
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~--------------------------------------- 671 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPK--------------------------------------- 671 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccccc---------------------------------------
Confidence 99999999999999999999999999999997421000000
Q ss_pred chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298 733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 812 (1105)
Q Consensus 733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 812 (1105)
T Consensus 672 -------------------------------------------------------------------------------- 671 (914)
T PRK11466 672 -------------------------------------------------------------------------------- 671 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhcc
Q 001298 813 AWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKF 892 (1105)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1105)
. |
T Consensus 672 -------~-------------------~---------------------------------------------------- 673 (914)
T PRK11466 672 -------T-------------------V---------------------------------------------------- 673 (914)
T ss_pred -------c-------------------c----------------------------------------------------
Confidence 0 0
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhc
Q 001298 893 RKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKV 972 (1105)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~ 972 (1105)
.......+++||||||++.++..+..+|+..
T Consensus 674 -------------------------------------------------~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~ 704 (914)
T PRK11466 674 -------------------------------------------------NQAVRLDGLRLLLIEDNPLTQRITAEMLNTS 704 (914)
T ss_pred -------------------------------------------------ccccccCCcceEEEeCCHHHHHHHHHHHHhc
Confidence 0000012468999999999999999999999
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus 973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
|+.|..+.+|.+|++.+.. ..+||+||||++||+|||++++++||+.. +++||
T Consensus 705 g~~v~~a~~~~~al~~~~~----------------------~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~-----~~~~i 757 (914)
T PRK11466 705 GAQVVAVGNAAQALETLQN----------------------SEPFAAALVDFDLPDYDGITLARQLAQQY-----PSLVL 757 (914)
T ss_pred CCceEEeCCHHHHHHHHHc----------------------CCCCCEEEEeCCCCCCCHHHHHHHHHhhC-----CCCCE
Confidence 9999999999999998852 24799999999999999999999999742 46999
Q ss_pred EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1053 VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1053 IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|++|++...+...+|+++|+++||.||++.++|..+|.++++..
T Consensus 758 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 758 IGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999988654
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=2.8e-47 Score=506.39 Aligned_cols=375 Identities=30% Similarity=0.493 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001298 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491 (1105)
Q Consensus 412 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~ 491 (1105)
+++++++++..|.+|+++|||||||||++|.|++++|.......++..+.+..+..++++|..+|+++++++|++++...
T Consensus 701 ~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~ 780 (1197)
T PRK09959 701 ERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQ 780 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 34455566778999999999999999999999999986544333444567888899999999999999999999999999
Q ss_pred ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCC
Q 001298 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571 (1105)
Q Consensus 492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~ 571 (1105)
+..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.||++||+||++.|.+.+.+....
T Consensus 781 ~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~--- 857 (1197)
T PRK09959 781 LQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGH--- 857 (1197)
T ss_pred eeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEee---
Confidence 99999999999999999999999999999887654333346899999999999999999999999998766542210
Q ss_pred CCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001298 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651 (1105)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 651 (1105)
..++...+.|+|.|+|+|||++.+++||+||++.+.. +..+|+|||
T Consensus 858 --------------------------------~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLG 903 (1197)
T PRK09959 858 --------------------------------IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLG 903 (1197)
T ss_pred --------------------------------ecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCch
Confidence 0122345789999999999999999999999987542 345799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecc
Q 001298 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETS 731 (1105)
Q Consensus 652 LaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 731 (1105)
|+|||+||+.|||+|+++|.+|+||+|+|.||+........ ..
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~-------------------------------------~~ 946 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT-------------------------------------VE 946 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc-------------------------------------cc
Confidence 99999999999999999999999999999999742100000 00
Q ss_pred cchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhccce
Q 001298 732 EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAM 811 (1105)
Q Consensus 732 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~ 811 (1105)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhc
Q 001298 812 FAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQK 891 (1105)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1105)
. + . . .
T Consensus 947 ---------~-----------------~---------------~----~-~----------------------------- 951 (1197)
T PRK09959 947 ---------A-----------------K---------------A----E-Q----------------------------- 951 (1197)
T ss_pred ---------c-----------------c---------------c----c-c-----------------------------
Confidence 0 0 0 0 0
Q ss_pred ccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHh
Q 001298 892 FRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEK 971 (1105)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~ 971 (1105)
+ .....+.+||||||++.++..+..+|+.
T Consensus 952 ------------~---------------------------------------~~~~~~~~iLivdd~~~~~~~l~~~L~~ 980 (1197)
T PRK09959 952 ------------P---------------------------------------ITLPEKLSILIADDHPTNRLLLKRQLNL 980 (1197)
T ss_pred ------------c---------------------------------------cccccCceEEEcCCCHHHHHHHHHHHHH
Confidence 0 0001135899999999999999999999
Q ss_pred cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcc
Q 001298 972 VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIP 1051 (1105)
Q Consensus 972 ~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ip 1051 (1105)
.|++|..+.+|.+|++.+.. ..||+||+|++||+|+|++++++||+.. +++|
T Consensus 981 ~g~~v~~~~~~~~al~~~~~-----------------------~~~dlil~D~~mp~~~g~~~~~~i~~~~-----~~~p 1032 (1197)
T PRK09959 981 LGYDVDEATDGVQALHKVSM-----------------------QHYDLLITDVNMPNMDGFELTRKLREQN-----SSLP 1032 (1197)
T ss_pred cCCEEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCC
Confidence 99999999999999998853 4799999999999999999999999742 4589
Q ss_pred eEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1052 IVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1052 IIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||++|++...+...+|+++||++||.||++.++|..+|.++..
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987654
No 8
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-48 Score=485.07 Aligned_cols=579 Identities=32% Similarity=0.414 Sum_probs=360.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 001298 395 GVSKEMKLRAELISHLDARRKAEASNNYKSQ--FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYAL 472 (1105)
Q Consensus 395 ~i~~~~~l~~~l~~~l~a~~~ae~~~~~Ks~--Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L 472 (1105)
.+.+...++..+....+....++.+...+++ |+++++|||||||++ |+...+. +...+.+++.+......++..+
T Consensus 191 ~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~ 267 (786)
T KOG0519|consen 191 ALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLS-DTDLDSDQRLILNTDRVSAKSL 267 (786)
T ss_pred hhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--CcceEEe-ccccchHHHHHHHHHhhhcccc
Confidence 3445555666666666666667777777888 999999999999998 6665543 4557788999999999999999
Q ss_pred HHHHHHHHHHHhhccCCccccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHh
Q 001298 473 LRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSI 552 (1105)
Q Consensus 473 ~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAI 552 (1105)
+.++++++|.+++++|.+++...+|++..+++.++..+...+..++..+....+...|..+.+|+.+++||+.|+++|||
T Consensus 268 ~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~nai 347 (786)
T KOG0519|consen 268 LSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAI 347 (786)
T ss_pred chhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhcccee
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cccCCCcEEEEeeccccCCCCCC--ccCCccccccchhhhhhhhhhhccccccc-c------CCceEEEEEEEeCCCCCC
Q 001298 553 KFTSSGHIIIRGWCENLDTSKNT--AEFPTDRKKFGRAFRTKLKQQANNAMNFR-E------DNKLALCFEVDDTGCGID 623 (1105)
Q Consensus 553 KfT~~G~i~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~~~V~DtG~GI~ 623 (1105)
|||..|++.+++++.......+. ..+......++......... ..+..... . .......+.+.|+|.||+
T Consensus 348 k~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~ 426 (786)
T KOG0519|consen 348 KFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQK-MSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQ 426 (786)
T ss_pred cccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHH-hccccccccccccccchhhHhheEeccCCceeEe
Confidence 99999999998776543322211 11111111111111111100 00111000 0 001234578999999999
Q ss_pred hhhHhh-hhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcE
Q 001298 624 QSKWET-VFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTV 702 (1105)
Q Consensus 624 ~e~l~~-IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~ 702 (1105)
.+.... +|.+|-|++.+.++.++|+|+|++||+.++++|+|.+.+.+....|++|+|.+++..........
T Consensus 427 ~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------- 498 (786)
T KOG0519|consen 427 TVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVG-------- 498 (786)
T ss_pred hhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchh--------
Confidence 999988 99999999999999999999999999999999999999999999999999999886532211100
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeee-cccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLE-TSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
...+ ..+-...-.|..... ...+.. + .+.... .....
T Consensus 499 -------~~~~-~~~~~~~~~G~~~~~~~~~~~~---------------------------~----~~~~~~---~~~~~ 536 (786)
T KOG0519|consen 499 -------DEKR-LFQIILDFNGMLALLIDTKLGR---------------------------E----QIFQVL---AELLG 536 (786)
T ss_pred -------hhhh-hhhhhhhhcchhhhhhccccCc---------------------------c----eeEEEE---ecccC
Confidence 0000 000000001100000 000000 0 000000 00000
Q ss_pred EEEEeeccccChhHHHHHhhhhh-hh-hccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLD-IF-HRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKIL 859 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~ 859 (1105)
..+|+.. +++...|.......+ +. ..-....|..+....... ....+......... ........
T Consensus 537 ~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~~~~~~~~~~~~~~---~~~~~~~~ 602 (786)
T KOG0519|consen 537 ISVDVSL-SLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSS----------NPLHKSLRDLTSKL---SSGSGLSL 602 (786)
T ss_pred ccccccc-cchhhhhhcccccccchheEEeeeccccccCCCcchh----------hhhhhccccchhhc---cccccccc
Confidence 1112222 222222222221111 00 000000111110000000 00000000000000 00000000
Q ss_pred cccccccccCCCCCCcccccccccccccchhcccccccccccCCCCCCCcchhhhhhhhhhhccccCC-CCCCCCCCCCC
Q 001298 860 GMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGS-SRRDQPCSSSN 938 (1105)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 938 (1105)
....... ...+. ...........+......+..+. ...... ....+......
T Consensus 603 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~~-------------------------~~~~~~~~~~~~~~~e~~ 655 (786)
T KOG0519|consen 603 ALCPENS-QLMEG-NIGLVPSSDGLPKSPSLCLEACL-------------------------RVELNSMGSKLSGNPEKL 655 (786)
T ss_pred ccchhhH-Hhhhc-ccccccccccCCccHHHHHHhhc-------------------------cccccccccccCCCcccc
Confidence 0000000 00000 00000000000000000000000 000000 00000000001
Q ss_pred CCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc
Q 001298 939 SSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD 1018 (1105)
Q Consensus 939 ~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 1018 (1105)
........+.|.+|||||||++||++++.+|+++|+++.++.+|.||+++++ ..+.||
T Consensus 656 ~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------------------~~~~y~ 713 (786)
T KOG0519|consen 656 AEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------------------PPHSYD 713 (786)
T ss_pred cCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------------------CCCccc
Confidence 1111345678999999999999999999999999999999999999999995 246899
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1019 lIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+|||||+||+|||||++++||+.+. .++|||||||++..+..++|++.|||+||.|||+.+.|...+++++.
T Consensus 714 ~ifmD~qMP~mDG~e~~~~irk~~~----~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 714 VIFMDLQMPEMDGYEATREIRKKER----WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEEEEcCCcccchHHHHHHHHHhhc----CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 9999999999999999999999764 57999999999999999999999999999999999999999998864
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.8e-44 Score=453.16 Aligned_cols=235 Identities=22% Similarity=0.310 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001298 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491 (1105)
Q Consensus 412 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~ 491 (1105)
++++++++++.|++|+++|||||||||++|.|++++|... ..++++.+.+..|..++.+|.++|+++++++|+|+|++.
T Consensus 439 a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~-~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~ 517 (894)
T PRK10618 439 AQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQT-SDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWK 517 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3445566778899999999999999999999999998653 356778889999999999999999999999999999999
Q ss_pred ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCC
Q 001298 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDT 571 (1105)
Q Consensus 492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~ 571 (1105)
++.++|++.+++++++..+...+.+|++.+.+.++...+..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 518 l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~---- 593 (894)
T PRK10618 518 PEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD---- 593 (894)
T ss_pred ccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----
Confidence 9999999999999999999999999999999887766666789999999999999999999999999988765321
Q ss_pred CCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001298 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651 (1105)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 651 (1105)
......+.|+|.|||+|||++.+++||+||++.+. ..+..+|+|||
T Consensus 594 ---------------------------------~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~-~~~~~~GtGLG 639 (894)
T PRK10618 594 ---------------------------------ESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ-GDRYGKASGLT 639 (894)
T ss_pred ---------------------------------cCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC-CCCCCCCcChh
Confidence 01123578999999999999999999999998653 23445799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 652 LaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
|+|||+||++|||+|+++|.+|+||+|+|+||+.
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 9999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.2e-42 Score=440.20 Aligned_cols=367 Identities=21% Similarity=0.264 Sum_probs=293.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
+...+|++++||||||||++|.|+++++........+..+++..|..++.++..++++++++++.+.+ ..+++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 45678999999999999999999999987655455677788999999999999999999999996544 35689999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCC
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
+++++++..+... ..+++.+.++.++. +..+.+|+.+|.|||.||++||+||++. |.|.|.+...........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~---- 597 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVL---- 597 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccccc----
Confidence 9999999988754 45788888877654 3468999999999999999999999864 567766543211000000
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
. .........++|+|.|+|+|||++.+++||+|||+.+. +|+||||+|||++|
T Consensus 598 -----------------~----~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv 650 (828)
T PRK13837 598 -----------------S----HGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIV 650 (828)
T ss_pred -----------------c----cccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHH
Confidence 0 00001234578999999999999999999999996432 79999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHH
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQI 739 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~ 739 (1105)
+.|||+|+++|.+|+||+|+|+||+.........
T Consensus 651 ~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~---------------------------------------------- 684 (828)
T PRK13837 651 SAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ---------------------------------------------- 684 (828)
T ss_pred HHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc----------------------------------------------
Confidence 9999999999999999999999997421100000
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccC
Q 001298 740 LRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQ 819 (1105)
Q Consensus 740 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 819 (1105)
.
T Consensus 685 --------------~----------------------------------------------------------------- 685 (828)
T PRK13837 685 --------------A----------------------------------------------------------------- 685 (828)
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhccccccccc
Q 001298 820 TTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEF 899 (1105)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1105)
.. .|
T Consensus 686 ~~-----------------~~----------------------------------------------------------- 689 (828)
T PRK13837 686 FF-----------------GP----------------------------------------------------------- 689 (828)
T ss_pred cC-----------------CC-----------------------------------------------------------
Confidence 00 00
Q ss_pred ccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEE
Q 001298 900 SSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVV 979 (1105)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a 979 (1105)
...+...+.+||||||++.++..+...|+..||++..+
T Consensus 690 ------------------------------------------~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~ 727 (828)
T PRK13837 690 ------------------------------------------GPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGF 727 (828)
T ss_pred ------------------------------------------cccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 00000124589999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccC
Q 001298 980 PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHA 1059 (1105)
Q Consensus 980 ~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1059 (1105)
.++.+|++.+... ..+||+||+ .||.|+|+++++.||+.. +.+|||++|++.
T Consensus 728 ~s~~~al~~l~~~---------------------~~~~DlVll--~~~~~~g~~l~~~l~~~~-----~~ipIIvls~~~ 779 (828)
T PRK13837 728 STLAAAIAWISKG---------------------PERFDLVLV--DDRLLDEEQAAAALHAAA-----PTLPIILGGNSK 779 (828)
T ss_pred CCHHHHHHHHHhC---------------------CCCceEEEE--CCCCCCHHHHHHHHHhhC-----CCCCEEEEeCCC
Confidence 9999999988531 235899999 799999999999999642 468999999999
Q ss_pred CHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1060 MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1060 ~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
......+++++| ++||.||++.++|..+|.++++..
T Consensus 780 ~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 780 TMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred chhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 999999999999 999999999999999999998754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-40 Score=358.21 Aligned_cols=223 Identities=27% Similarity=0.462 Sum_probs=194.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTN-EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~-e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
+.+|+||+||||||||+++.+++|.|.++...+. -..+++..-.++++||.+||||||.+||+.....+++.+.+|+..
T Consensus 225 rRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~ 304 (459)
T COG5002 225 RREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTA 304 (459)
T ss_pred HHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHhHH
Confidence 5689999999999999999999999975543222 244678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcE-EEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCCccCC
Q 001298 502 ELEELVDMFSVQCSNHNVE-TVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
++..+++.+...+.+..+. +.-+++. -+.++..|++++-||+.|+|+||+||+|+| .|.+.+..
T Consensus 305 fl~~ii~R~e~~~~~e~~~~~vR~~p~-~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~------------- 370 (459)
T COG5002 305 FLNEIINRFEMILKKETIARFVRDIPK-QDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ------------- 370 (459)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCCC-CceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEee-------------
Confidence 9999999998886665554 4444443 366899999999999999999999999976 56665321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
....+.++|.|.|.|||++++++||++|||+|..++|+.|||||||+|+|.||
T Consensus 371 ---------------------------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV 423 (459)
T COG5002 371 ---------------------------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIV 423 (459)
T ss_pred ---------------------------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHH
Confidence 12347899999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+.|||.||.+|++|+||+|+|+||...
T Consensus 424 ~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 424 QAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred HHhCCeEEEecccCCceEEEEEecccC
Confidence 999999999999999999999999754
No 12
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-37 Score=365.31 Aligned_cols=227 Identities=29% Similarity=0.498 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001298 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNE-QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMEL 492 (1105)
Q Consensus 415 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~-~~l~~e-~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l 492 (1105)
-+.+..+.++.|++++||||||||++|.|.++.|... ..++++ +.+.+..|.+.+++|.++|++|||++|+++|.+++
T Consensus 652 l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l 731 (890)
T COG2205 652 LAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNL 731 (890)
T ss_pred HHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Confidence 3344567789999999999999999999999999754 345555 56778889999999999999999999999999999
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-EEEEeeccccCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDT 571 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-i~v~~~~~~~~~ 571 (1105)
+.++..+.+++.+++.........+. +..+++++++ .+.+|...|.|||.|||+||+||++.|. |.|.++..
T Consensus 732 ~~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~---- 804 (890)
T COG2205 732 KLDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE---- 804 (890)
T ss_pred ccchhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe----
Confidence 99999999999999987776666555 5566677766 5899999999999999999999999885 77776432
Q ss_pred CCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccch
Q 001298 572 SKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLG 651 (1105)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLG 651 (1105)
...++|+|.|+|+|||++++++||++||++++... ..|+|||
T Consensus 805 ------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~--~~G~GLG 846 (890)
T COG2205 805 ------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA--TRGVGLG 846 (890)
T ss_pred ------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC--CCCcccc
Confidence 12478999999999999999999999999986433 6799999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 652 LSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 652 LaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|+||+.||+.|||+|++++.+++|++|.|.||...
T Consensus 847 LsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~ 881 (890)
T COG2205 847 LAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEE 881 (890)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCC
Confidence 99999999999999999999999999999999864
No 13
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=9.9e-36 Score=362.21 Aligned_cols=369 Identities=22% Similarity=0.311 Sum_probs=285.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeec
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDD----QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~----~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~d 498 (1105)
..++++.++||+|+||+.|.|++++|.... .......+.+..|...+.++..++++++++++.. .+....++
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~ 238 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLN 238 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccC
Confidence 456899999999999999999999885321 1234455678889999999999999999998853 34556799
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-EEEEeeccccCCCCCCcc
Q 001298 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAE 577 (1105)
Q Consensus 499 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-i~v~~~~~~~~~~~~~~~ 577 (1105)
+..+++.+...+. ....+++.+.+...+..+ .+.+|+.++.|+|.||+.||+||++.|. +.+............
T Consensus 239 l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~--- 313 (540)
T PRK13557 239 LNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL--- 313 (540)
T ss_pred HHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc---
Confidence 9999998877654 344577888877766654 4789999999999999999999997654 444332110000000
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001298 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657 (1105)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 657 (1105)
...........+.|+|.|+|+|||++.++++|++||+.+. ..+|+||||+|||+
T Consensus 314 ----------------------~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~ 367 (540)
T PRK13557 314 ----------------------AMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE----EGKGTGLGLSMVYG 367 (540)
T ss_pred ----------------------ccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----CCCCCCccHHHHHH
Confidence 0000001223578999999999999999999999996542 34699999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhH
Q 001298 658 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLT 737 (1105)
Q Consensus 658 LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~ 737 (1105)
+++.|||+|+++|.+|+||+|+|+||.........
T Consensus 368 ~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------------------------------------- 402 (540)
T PRK13557 368 FAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------------------------------------- 402 (540)
T ss_pred HHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC---------------------------------------------
Confidence 99999999999999999999999998732100000
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeec
Q 001298 738 QILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN 817 (1105)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~ 817 (1105)
+
T Consensus 403 -----------~-------------------------------------------------------------------- 403 (540)
T PRK13557 403 -----------Q-------------------------------------------------------------------- 403 (540)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccccccccccCCCCCCcccccccccccccchhccccccc
Q 001298 818 HQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSF 897 (1105)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1105)
.. ++
T Consensus 404 --~~-----------------~~--------------------------------------------------------- 407 (540)
T PRK13557 404 --EP-----------------KA--------------------------------------------------------- 407 (540)
T ss_pred --CC-----------------CC---------------------------------------------------------
Confidence 00 00
Q ss_pred ccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEE
Q 001298 898 EFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVS 977 (1105)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~ 977 (1105)
.......+.+|||+||++..+..+..+|+..|+.+.
T Consensus 408 --------------------------------------------~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~ 443 (540)
T PRK13557 408 --------------------------------------------RAIDRGGTETILIVDDRPDVAELARMILEDFGYRTL 443 (540)
T ss_pred --------------------------------------------cccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEE
Confidence 000011245899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHHHHccccccCCCCcceEEEe
Q 001298 978 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALT 1056 (1105)
Q Consensus 978 ~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ipIIalT 1056 (1105)
.+.++.+|++.+.. ...||+|++|+.||. ++|+++++.||+.. +.+|||++|
T Consensus 444 ~~~~~~~~~~~~~~----------------------~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~-----~~~~ii~~~ 496 (540)
T PRK13557 444 VASNGREALEILDS----------------------HPEVDLLFTDLIMPGGMNGVMLAREARRRQ-----PKIKVLLTT 496 (540)
T ss_pred EeCCHHHHHHHHhc----------------------CCCceEEEEeccCCCCCCHHHHHHHHHHhC-----CCCcEEEEc
Confidence 99999999998742 236999999999997 99999999999742 458999999
Q ss_pred ccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1057 AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1057 a~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
.+........++.+|+++|+.||++.++|..++.+++...+
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 537 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPT 537 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 99888888889999999999999999999999998887554
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3.7e-35 Score=343.26 Aligned_cols=233 Identities=23% Similarity=0.330 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001298 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQL------TNEQYSTVCQIKKSSYALLRLLNRILDLSK 484 (1105)
Q Consensus 411 ~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l------~~e~~~~l~~I~~ss~~L~~LIndiLdlsk 484 (1105)
++++++++..+.|.+|++++||||||||++|.+++++|...... .+...+.+..+..+..+|..++++++++++
T Consensus 139 ~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~ 218 (380)
T PRK09303 139 QENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGR 218 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667799999999999999999999999999743221 122556778899999999999999999999
Q ss_pred hccCCccccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEE
Q 001298 485 VESGKMELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIR 563 (1105)
Q Consensus 485 ie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~ 563 (1105)
.+.+...++.+++++.+++++++..+...+..+++.+.++++.+.| .+.+|+.+|.|||.|||+||+||++.| .|.+.
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~ 297 (380)
T PRK09303 219 TRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTITLS 297 (380)
T ss_pred hhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999999999999999999999999999999999877765 589999999999999999999999765 55554
Q ss_pred eeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCC
Q 001298 564 GWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTR 643 (1105)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~ 643 (1105)
+.. .....+.|+|.|+|+|||++.+++||+|||+.+. .+
T Consensus 298 ~~~---------------------------------------~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~ 336 (380)
T PRK09303 298 MLH---------------------------------------RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DE 336 (380)
T ss_pred EEe---------------------------------------cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CC
Confidence 321 1122478999999999999999999999998865 34
Q ss_pred CCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 644 KHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 644 ~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
..+|+||||+|||+||+.|||+|+++|.+++||+|+|+||+.
T Consensus 337 ~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 337 GTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 567999999999999999999999999999999999999974
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=9.3e-33 Score=328.31 Aligned_cols=221 Identities=25% Similarity=0.390 Sum_probs=189.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
.+.+|++++||||||||++|.|++++|.......+...+.+..|.+++.+|..++++++++++++.+........+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 35689999999999999999999999875544445566788889999999999999999999999987777778899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCCccCCc
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
+++.+...+.... .+++.+.+++++.. .+.+|+.+|.|||.||++||+||+++| .|.+.+..
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~-------------- 345 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQR-------------- 345 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE--------------
Confidence 9988877665555 67788888876654 588999999999999999999999865 45554321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
+...+.|+|.|+|+|||++.++++|+|||+.+.+.+++.+|+||||+|||++|+
T Consensus 346 --------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 346 --------------------------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred --------------------------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHH
Confidence 112367999999999999999999999999887766777899999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
.|||+|+++|.+++||+|+|.||..
T Consensus 400 ~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 400 HHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred HCCCEEEEEecCCCceEEEEEechH
Confidence 9999999999999999999999864
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=7.4e-32 Score=320.91 Aligned_cols=222 Identities=24% Similarity=0.352 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccce
Q 001298 416 AEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENT 495 (1105)
Q Consensus 416 ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~ 495 (1105)
.++..+.+.+|++++||||||||+.|.+.++++.. ..+++.+ .+.+..++|..++++++.++|++.+...+..+
T Consensus 205 l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~---~~~~~~~---~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~ 278 (433)
T PRK10604 205 INALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN---LSAAESQ---ALNRDIGQLEALIEELLTYARLDRPQNELHLS 278 (433)
T ss_pred HHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC---CCcHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Confidence 33444567889999999999999999999998752 2222222 37788899999999999999999999888999
Q ss_pred eecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCC
Q 001298 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNT 575 (1105)
Q Consensus 496 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~ 575 (1105)
++++.+++++++..+......+++++.++.+ +..+.+|+..+.+|+.||++||+||+. |.|.|.+...
T Consensus 279 ~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~-------- 346 (433)
T PRK10604 279 EPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLD-------- 346 (433)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE--------
Confidence 9999999999999998888888877765433 234678999999999999999999985 6676654321
Q ss_pred ccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001298 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 655 (1105)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 655 (1105)
...+.|+|.|+|+|||++.+++||+|||+.+.+++++.+|+||||+||
T Consensus 347 --------------------------------~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 347 --------------------------------GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIV 394 (433)
T ss_pred --------------------------------CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHH
Confidence 123779999999999999999999999999887777778999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 656 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 656 k~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
|++++.|||+|.++|.+++||+|++.+|+..+
T Consensus 395 k~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~~ 426 (433)
T PRK10604 395 HSIALAMGGSVNCDESELGGARFSFSWPVWHN 426 (433)
T ss_pred HHHHHHCCCEEEEEecCCCeeEEEEEEeCCCC
Confidence 99999999999999999999999999998653
No 17
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=2.5e-30 Score=309.91 Aligned_cols=214 Identities=25% Similarity=0.441 Sum_probs=183.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
...+|.+++||||||||++|.|+++++.......++..+....|.+.++++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 34579999999999999999999999876554455666778889999999999999999999843 34567899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCCc
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
++++++..+...+.++++.+.++.++..+ .+.+|+.+|.|++.||++||+||+.+ |.|.|.+...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 57899999999999999999999864 5566654211
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
...+.|+|.|+|+|||++.++++|++||+. +.+|+||||+|||++++
T Consensus 378 ---------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 378 ---------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEGTGLGLAVVHNIVE 424 (457)
T ss_pred ---------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccC------CCCCCcccHHHHHHHHH
Confidence 123789999999999999999999999853 24589999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
.|||+|+++|.+++||+|++.||+..
T Consensus 425 ~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 425 QHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred HCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 99999999999999999999999853
No 18
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=6.2e-31 Score=316.71 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+...+|++++||||||||++|.++++.|........++. ...+.+...++..+++++++.++.+++...+..+.+++
T Consensus 263 ~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~~~--~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l 340 (485)
T PRK10815 263 YTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVEQA--EPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSV 340 (485)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecH
Confidence 3445679999999999999999999999876543443332 34567788899999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
..+++++++.+...+..+++++.++++++. .+.+|+..|.||+.||++||+||++++ +.|.+..
T Consensus 341 ~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~~------------- 404 (485)
T PRK10815 341 APLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLEF-VEISARQ------------- 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEE-------------
Confidence 999999999999999999999998886544 578999999999999999999999753 4443321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
....+.|+|.|+|+|||++.+++||+||++.+.. .+|+||||+|||++|
T Consensus 405 ---------------------------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk~iv 453 (485)
T PRK10815 405 ---------------------------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLSVAREIT 453 (485)
T ss_pred ---------------------------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHHHHHHHH
Confidence 1124779999999999999999999999987532 359999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+.|||+|.++|.+++||+|++.||..
T Consensus 454 ~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 454 EQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred HHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 99999999999999999999999864
No 19
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=5.6e-30 Score=308.03 Aligned_cols=223 Identities=26% Similarity=0.412 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceee
Q 001298 418 ASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEF 497 (1105)
Q Consensus 418 ~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~ 497 (1105)
+....+.+|++++||||||||+.|.+.++.+........+..+.+..+.....++..++++++++++.+.+.......++
T Consensus 257 ~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (482)
T PRK09835 257 DVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKML 336 (482)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceee
Confidence 33445678999999999999999999999876554444455566777778889999999999999999999888888899
Q ss_pred cHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-EEEEeeccccCCCCCCc
Q 001298 498 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTA 576 (1105)
Q Consensus 498 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-i~v~~~~~~~~~~~~~~ 576 (1105)
++.+++++++..+...+.++++.+.++.+ +..+.+|+.+|.||+.||++||+||+++|+ |.|++...
T Consensus 337 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~--------- 404 (482)
T PRK09835 337 DLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV--------- 404 (482)
T ss_pred cHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe---------
Confidence 99999999999999999999998877532 336889999999999999999999997654 66654211
Q ss_pred cCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001298 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656 (1105)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 656 (1105)
...++|+|.|+|+|||++.++++|+|||+.+.+.++..+|+||||+||+
T Consensus 405 -------------------------------~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~ 453 (482)
T PRK09835 405 -------------------------------DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVK 453 (482)
T ss_pred -------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHH
Confidence 1136799999999999999999999999998776666789999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 657 ~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
++++.|||+|+++|. +.||+|++.||.
T Consensus 454 ~i~~~~~g~i~~~s~-~~g~~~~i~lP~ 480 (482)
T PRK09835 454 SIVVAHKGTVAVTSD-ARGTRFVISLPR 480 (482)
T ss_pred HHHHHCCCEEEEEEC-CCcEEEEEEeeC
Confidence 999999999999997 469999999985
No 20
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=100.00 E-value=5.7e-30 Score=320.27 Aligned_cols=223 Identities=23% Similarity=0.349 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001298 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496 (1105)
Q Consensus 417 e~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~ 496 (1105)
++..+...+|.+.+|||+||||+.|.+.++.+... ...++..+.+..+...+.+|..+++++++++++|.+......++
T Consensus 479 ~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~-~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~~ 557 (703)
T TIGR03785 479 RQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQ-ALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVED 557 (703)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccee
Confidence 34445567899999999999999999999998643 34566677888999999999999999999999998888888899
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCC
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNT 575 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~ 575 (1105)
+|+.+++++++..+...+..+++.+.++.+ +..+.+|+..|.|++.|||+||+||+++| .|.|.+..
T Consensus 558 ~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~--------- 625 (703)
T TIGR03785 558 FDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQ--------- 625 (703)
T ss_pred ecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEE---------
Confidence 999999999999999998888877766532 23689999999999999999999999765 45554321
Q ss_pred ccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001298 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 655 (1105)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 655 (1105)
+...+.|+|.|+|+||+++.+++||+|||+.+.......+|+||||+||
T Consensus 626 -------------------------------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Iv 674 (703)
T TIGR03785 626 -------------------------------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIV 674 (703)
T ss_pred -------------------------------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHH
Confidence 1124779999999999999999999999987755444556899999999
Q ss_pred HHHHHHcCCEEEEEEeCC-CceEEEEEEe
Q 001298 656 RTLVNKMGGEIKVVKKNS-PGTLMQLYLL 683 (1105)
Q Consensus 656 k~LVe~~gG~I~v~S~~g-~GT~f~~~lp 683 (1105)
|+||+.|||+|.+++..+ .|++|+|.||
T Consensus 675 r~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 675 RLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 999999999999999875 8999999987
No 21
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-30 Score=296.09 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=180.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEI---LKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~el---L~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
..++.+.+||||+.||++|.++++- |.+.. ..++-...+..|..-++||-.+...|-.|++--... ..++.+
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLerg-r~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERG-RTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcC-ChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 3568899999999999999999874 33333 467778889999999999999999999998855443 558999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC---CCcEEEEeeccccCCCCCCc
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTA 576 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~---~G~i~v~~~~~~~~~~~~~~ 576 (1105)
.+.|++++..+..+.+..+..+..++++. |.+|.+|+.||+|||.|||.||+..+. ++.|.|+++.+
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~--------- 528 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE--------- 528 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec---------
Confidence 99999999999999999999999887654 457999999999999999999999874 56777765321
Q ss_pred cCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001298 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656 (1105)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 656 (1105)
...+.++|.||||||+++.+.++|+||+..+ ....|.||||+||+
T Consensus 529 -------------------------------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK----~~~~GLGLGLaIS~ 573 (603)
T COG4191 529 -------------------------------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTK----PVGKGLGLGLAISQ 573 (603)
T ss_pred -------------------------------CCeEEEEEccCCCCCCHHHHHhhcCCccccC----cccCCcchhHHHHH
Confidence 2247899999999999999999999999433 23569999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 657 ~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
+|++-|||+|.+.+.++.|+.|++.|+.
T Consensus 574 ~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 574 NIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred HHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 9999999999999999999999999974
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=1.8e-30 Score=311.15 Aligned_cols=227 Identities=29% Similarity=0.469 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001298 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496 (1105)
Q Consensus 417 e~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~ 496 (1105)
++..+.+.+|++.+|||+||||+.|.+.++.+.+... +...+.+..+...+.+|.+++++++++++.+.+...+...+
T Consensus 234 ~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~--~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~~ 311 (466)
T PRK10549 234 EKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR--KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKTP 311 (466)
T ss_pred HHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Confidence 3445567889999999999999999999999875421 22234566788889999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCC
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNT 575 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~ 575 (1105)
+++.+++++++..+...+..+++++.+++++.. .+.+|+.++.|++.|||+||+||+++| .|.|.+..
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~--------- 380 (466)
T PRK10549 312 VDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ--------- 380 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE---------
Confidence 999999999999999999999999998886553 477999999999999999999999764 56655321
Q ss_pred ccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001298 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 655 (1105)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 655 (1105)
....+.|+|.|+|+|||++.++++|+|||+.+.+..+..+|+||||+||
T Consensus 381 -------------------------------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 429 (466)
T PRK10549 381 -------------------------------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAIC 429 (466)
T ss_pred -------------------------------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHH
Confidence 1124789999999999999999999999999876666678999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 656 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 656 k~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
+++++.|||++.++|.+++||+|+|.||+..+
T Consensus 430 ~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~~ 461 (466)
T PRK10549 430 LNIVEAHNGRIIAAHSPFGGVSITVELPLERD 461 (466)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEccCCCC
Confidence 99999999999999999999999999998643
No 23
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=5.3e-30 Score=305.58 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=188.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
....+|.+++||||||||+.+.++++.+.......++..+.+..+.....+|.+++++++.+++++.....+..+++++.
T Consensus 239 ~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 318 (457)
T TIGR01386 239 QRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLA 318 (457)
T ss_pred HHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCHH
Confidence 34557999999999999999999999876554444555567777888899999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCC
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
++++++++.+...+.++++.+.++.+ ..+.+|+..|.+++.||++||+||+++ |.|.|....
T Consensus 319 ~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~------------- 381 (457)
T TIGR01386 319 AELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER------------- 381 (457)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe-------------
Confidence 99999999999999999988776532 358999999999999999999999976 466665421
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
+...+.|+|.|+|+|||++.++++|++||+.+.+.++..+|+||||+||++++
T Consensus 382 ---------------------------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~ 434 (457)
T TIGR01386 382 ---------------------------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIM 434 (457)
T ss_pred ---------------------------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHHH
Confidence 11247799999999999999999999999998776667789999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEe
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lp 683 (1105)
+.|||+|.+++ +++||+|++.||
T Consensus 435 ~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 435 EAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred HHCCCEEEEEe-CCCceEEEEecC
Confidence 99999999999 999999999987
No 24
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=3.1e-29 Score=299.66 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001298 417 EASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496 (1105)
Q Consensus 417 e~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~ 496 (1105)
++....+.+|++++||||||||+.|.+.++++....... ..+..+...+.+|..++++++++++.+... .+..+.
T Consensus 237 ~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~----~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~ 311 (461)
T PRK09470 237 ERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES----KELERIETEAQRLDSMINDLLVLSRNQQKN-HLERET 311 (461)
T ss_pred HHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccce
Confidence 334445668999999999999999999999876433211 245668889999999999999999987653 567788
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCc
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~ 576 (1105)
+++..++++++..+...+..+++.+.++..++ +..+.+|+..|.+++.||++||+||++ +.|.|.+...
T Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~--------- 380 (461)
T PRK09470 312 FKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD--------- 380 (461)
T ss_pred ecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE---------
Confidence 99999999999988888888999888874333 446899999999999999999999986 4566654221
Q ss_pred cCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001298 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656 (1105)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 656 (1105)
...+.|+|.|+|+||+++.++++|+|||+.+....+..+|+||||+||+
T Consensus 381 -------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~ 429 (461)
T PRK09470 381 -------------------------------KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVE 429 (461)
T ss_pred -------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHH
Confidence 1236799999999999999999999999988766667789999999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 657 ~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
++|+.|||++.++|.+++||+|++.+|+.
T Consensus 430 ~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 430 NAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred HHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 99999999999999999999999999985
No 25
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=8.3e-30 Score=295.19 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+.+.+|++++||||||||++|.++++++.... ..+ ...+.+...++..++++++++++.+..........+++
T Consensus 134 ~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~--~~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l 207 (356)
T PRK10755 134 LDQERLFTADVAHELRTPLAGIRLHLELLEKQH--HID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKL 207 (356)
T ss_pred HHHHHHHHHHhhHhhcChHHHHHHHHHHHHhcc--chh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhH
Confidence 344567999999999999999999999886432 111 23455667789999999999999887766666677888
Q ss_pred -HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCCcc
Q 001298 500 -QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAE 577 (1105)
Q Consensus 500 -~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~~~ 577 (1105)
.+++..++..+...+..+++.+.++..+. +..+.+|+..+++|+.||++||+||+++| .|.|.+..
T Consensus 208 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~----------- 275 (356)
T PRK10755 208 LEDVILPSQDELSEMLEQRQQTLLLPESAA-DITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ----------- 275 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEeccCCC-ceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE-----------
Confidence 88999988889888889999887743222 34689999999999999999999999754 56665421
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001298 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657 (1105)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 657 (1105)
+...+.|+|+|+|+||+++.++++|++||+.+. +.+|+||||+||++
T Consensus 276 -----------------------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~ 322 (356)
T PRK10755 276 -----------------------------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSR 322 (356)
T ss_pred -----------------------------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHH
Confidence 112377999999999999999999999998653 34699999999999
Q ss_pred HHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001298 658 LVNKMGGEIKVVKKNS-PGTLMQLYLLLG 685 (1105)
Q Consensus 658 LVe~~gG~I~v~S~~g-~GT~f~~~lpl~ 685 (1105)
+++.|||+|+++|.++ +||+|++.||..
T Consensus 323 i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 323 ITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred HHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 9999999999999998 999999999864
No 26
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=9.4e-30 Score=325.38 Aligned_cols=224 Identities=26% Similarity=0.436 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001298 418 ASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ-LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496 (1105)
Q Consensus 418 ~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~-l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~ 496 (1105)
+..+.|.+|++.+||||||||++|.|++++|..+.. ...+..+.+..|.+...++.+++++++++++++.+.+.+...+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 345678899999999999999999999998864322 2233445678899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCC
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNT 575 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~ 575 (1105)
+++.+++++++..+...+..+++.+. ++++.+ .+.+|+.+|.|||.|||+||+||+++| .|.+.+...
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999999888877776654 445544 589999999999999999999999876 455543211
Q ss_pred ccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHH
Q 001298 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIV 655 (1105)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIv 655 (1105)
...+.|+|.|+|+|||++.+++||+|||+.+.. +..+|+||||+||
T Consensus 808 --------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~Iv 853 (895)
T PRK10490 808 --------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLAIC 853 (895)
T ss_pred --------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHHHH
Confidence 124789999999999999999999999987643 3346999999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 656 RTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 656 k~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|++++.|||+|+++|.+++||+|+|.||+..
T Consensus 854 k~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 9999999999999999999999999999864
No 27
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=6.6e-30 Score=306.54 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=166.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeec
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ--LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFD 498 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~--l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~d 498 (1105)
+...++++.++|||||||++|.|++++|..... ..++....+..+...+.++...+.++++ ....+...++|
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~d 347 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVN 347 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCccccccccc
Confidence 334578899999999999999999999864311 1233333333333333333333333332 23344567899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-----EEEEeeccccCCCC
Q 001298 499 LQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-----IIIRGWCENLDTSK 573 (1105)
Q Consensus 499 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-----i~v~~~~~~~~~~~ 573 (1105)
+..++++++..+...+..+++.+.++.+..+| .+.+|+.+|+|||.||++||+||++.+. |.+....
T Consensus 348 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------- 419 (494)
T TIGR02938 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL------- 419 (494)
T ss_pred HHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe-------
Confidence 99999999999999999999999998877666 5889999999999999999999997662 3332211
Q ss_pred CCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHH
Q 001298 574 NTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLS 653 (1105)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLa 653 (1105)
....+.|+|+|||+|||++.+++||+|||+.+... .+|+||||+
T Consensus 420 ---------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~ 463 (494)
T TIGR02938 420 ---------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLS 463 (494)
T ss_pred ---------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHH
Confidence 12247899999999999999999999999876432 579999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 654 Ivk~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
|||+||++|||+|+++|.+++||+|+|+||+
T Consensus 464 i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 464 VAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred HHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 9999999999999999999999999999985
No 28
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.97 E-value=5.9e-28 Score=289.22 Aligned_cols=220 Identities=29% Similarity=0.428 Sum_probs=190.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
....+|++.++||||||++.|.+.++.|... ...++..+.+..+...+.++..++++++.+++++.+.......++++.
T Consensus 254 ~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK11100 254 AYVEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALA 332 (475)
T ss_pred HHHHHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHH
Confidence 3456799999999999999999999998753 335566778889999999999999999999999988877788999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCC
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
+++++++..+...+.++++++.++++ +..+.+|...|.+++.||+.||+||+.+ |.|.|.+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~------------ 397 (475)
T PRK11100 333 ALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD------------ 397 (475)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------------
Confidence 99999999999999999999988765 3468899999999999999999999965 5666654211
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
...+.++|.|+|+|||++.++++|++||+.... ....+|+||||+||++++
T Consensus 398 ----------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 398 ----------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred ----------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHH
Confidence 124779999999999999999999999976532 234579999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+.|||+|.++|.++.||+|++.||..
T Consensus 449 ~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 449 RLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 99999999999999999999999864
No 29
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=2.2e-28 Score=291.91 Aligned_cols=215 Identities=23% Similarity=0.322 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.....+|++++||||||||+.|.+.++.+.......+.....+..+...+.++..++++++.+++++.+......+++++
T Consensus 234 ~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~l 313 (449)
T PRK10337 234 MVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPL 313 (449)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCH
Confidence 34456799999999999999999999987644333334456788899999999999999999999998776667789999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCCccC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEF 578 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~~~~ 578 (1105)
.+++++++..+...+..+++.+.++.++. +..+.+|+..+.+++.||++||+||+++| .|.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~------------- 379 (449)
T PRK10337 314 EDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLN------------- 379 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE-------------
Confidence 99999999999999999999999887654 33578999999999999999999999865 4554321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001298 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
...++|.|+|+|||++.++++|+|||+.+. +..+|+||||+||+++
T Consensus 380 -------------------------------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 380 -------------------------------ARNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSIVRRI 425 (449)
T ss_pred -------------------------------eeEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHHHHHH
Confidence 014889999999999999999999998653 2346999999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEE
Q 001298 659 VNKMGGEIKVVKKNSPGTLMQLYL 682 (1105)
Q Consensus 659 Ve~~gG~I~v~S~~g~GT~f~~~l 682 (1105)
+++|||+|.++|.+++|++|++.|
T Consensus 426 ~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 426 AKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred HHHcCCEEEEEecCCCeEEEEEeC
Confidence 999999999999999999998864
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=2.1e-28 Score=290.78 Aligned_cols=214 Identities=24% Similarity=0.385 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001298 415 KAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELEN 494 (1105)
Q Consensus 415 ~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~ 494 (1105)
+.++..+.+..|++++||||||||+.|.+.++++..+ .......+.+...+|..++++++++.+.+.. ...
T Consensus 221 ~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~---~~~ 291 (435)
T PRK09467 221 GIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLRTGQE---MPM 291 (435)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCc
Confidence 3445566788899999999999999999999877422 1223445788899999999999999987653 345
Q ss_pred eeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCC
Q 001298 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 495 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~ 574 (1105)
.++++.+++++++..+. ..+..+.+++++. +..+.+|+..|.+++.||++||+||+ .|.|.|.....
T Consensus 292 ~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~------- 358 (435)
T PRK09467 292 EMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE------- 358 (435)
T ss_pred cccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec-------
Confidence 68899999999887654 3445555555444 33689999999999999999999998 56677654211
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
...++|+|.|+|+||+++.++++|+|||+++.. +..+|+||||+|
T Consensus 359 ---------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~i 403 (435)
T PRK09467 359 ---------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAI 403 (435)
T ss_pred ---------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHH
Confidence 124779999999999999999999999998754 334799999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 655 vk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
|+++++.|||+|.+.+.+++|++|++.||+.
T Consensus 404 v~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred HHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9999999999999999999999999999974
No 31
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=9.8e-29 Score=263.54 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=178.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNE-QYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e-~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+-+.++++++||||+||.+|.|.+++|... ++++ .+++.+.|.++++||.+|++.+.-|+-- -.....++|+
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~--lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NI 203 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERA--LPDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNI 203 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchH
Confidence 3456789999999999999999999999654 3444 7788888999999999999999776542 2445568999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC---C--CcEEEEeeccccCCCCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS---S--GHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~---~--G~i~v~~~~~~~~~~~~ 574 (1105)
..+++.+.......+ ..++.+.-+.++.+|. +++|+++|.|+|.||+.||+..-. . |.|+++.+....-
T Consensus 204 H~VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~---- 277 (363)
T COG3852 204 HEVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL---- 277 (363)
T ss_pred HHHHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----
Confidence 999999887655443 4679999999999986 899999999999999999999864 2 6777764321000
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
. . .....+..+.++|.|||+|||++-++++|.||..+ +.+||||||+|
T Consensus 278 ---------------~----i-------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------r~~GsGLGLal 325 (363)
T COG3852 278 ---------------T----I-------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------REGGTGLGLAL 325 (363)
T ss_pred ---------------E----c-------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------CCCCccccHHH
Confidence 0 0 01123445788999999999999999999999843 45799999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 655 vk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+++||..|||.|+++|.+| .|+|++.+|+..
T Consensus 326 a~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 326 AQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred HHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 9999999999999999987 599999999865
No 32
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-28 Score=279.16 Aligned_cols=227 Identities=28% Similarity=0.410 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001298 413 RRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSD--DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 490 (1105)
Q Consensus 413 ~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~--~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~ 490 (1105)
+++.+++|....+|...+||+||.||+.|.+++++|... +.++.+.++.+..+.+.+.++.+||++++.+|++..-..
T Consensus 514 ~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~ 593 (750)
T COG4251 514 RRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEA 593 (750)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC
Confidence 456677788888999999999999999999999999876 678889999999999999999999999999999976544
Q ss_pred cccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC--cEEEEeeccc
Q 001298 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCEN 568 (1105)
Q Consensus 491 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--~i~v~~~~~~ 568 (1105)
. .++.|+.+++++++.....+..+.++++.+.. +| .+.+|+.++.|++.||+.|||||..++ .|.|.+ +.
T Consensus 594 ~--l~~td~~~vv~~vl~~l~~ri~dtgaei~i~~---lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~--~r 665 (750)
T COG4251 594 P--LQPTDVQKVVDKVLLELSQRIADTGAEIRIAP---LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEISA--ER 665 (750)
T ss_pred C--CCCcchHHHHHHHHHhcccccccccceEEecc---cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEee--ec
Confidence 4 45889999999999999999999999887653 56 489999999999999999999998665 344332 10
Q ss_pred cCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCc
Q 001298 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648 (1105)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~Gt 648 (1105)
....++|.|.|+|+||+++..++||..|-+... ..++.||
T Consensus 666 --------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gt 705 (750)
T COG4251 666 --------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGT 705 (750)
T ss_pred --------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCc--hhhhcCC
Confidence 112377999999999999999999999998753 4567899
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 649 GLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
|+||+|||+|++.|+|+|+|+|++|+|+||.|++|....
T Consensus 706 G~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~ 744 (750)
T COG4251 706 GLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGE 744 (750)
T ss_pred CccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCc
Confidence 999999999999999999999999999999999998754
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=7.2e-28 Score=273.73 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=189.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
+.+|++.++|||||||++|.++++.|... ....++..+++..|...+.+|..++++++++++++.+......+++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 45799999999999999999999988654 33445566778889999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCCc
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
++..++..+...+..+++.+.+..+. +..+.+|+..|.+||.||+.||+||++. +.|.|.+..
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~-------------- 257 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRR-------------- 257 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEE--------------
Confidence 99999999999999999999988733 3468999999999999999999999875 455554321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
.+ ..+.|.|.|+|+|||++.++++|++|++.+...+...+|+||||+||+++++
T Consensus 258 ------------------------~~--~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 258 ------------------------DG--GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred ------------------------cC--CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHH
Confidence 11 1377999999999999999999999998776555567899999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEE
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYL 682 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~l 682 (1105)
.|||+|++.|.+++||+|+++|
T Consensus 312 ~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 312 RHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred HCCCEEEEEecCCCCeEEEEEC
Confidence 9999999999999999999874
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.7e-26 Score=266.31 Aligned_cols=217 Identities=24% Similarity=0.418 Sum_probs=170.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
...+|++.+||||||||++|.|++++|.+.. ..++..+++..|..++.+|..++++++++.+... ...+++..
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~ 201 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKAL-PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHK 201 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHH
Confidence 4468999999999999999999999986543 3456677888899999999999999998765432 34678999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhccc-C-CCcEEEEeeccccCCCCCCccCC
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-S-SGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-~-~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
+++.+...+.... .+++.+.++.++..+ .+.+|+.+|.||+.||++||+||+ + .|.|.+.........
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~-------- 271 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT-------- 271 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc--------
Confidence 9999888776554 467888887766655 489999999999999999999997 3 455655432110000
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
. ........+.++|.|+|+|||++.++++|+|||+. +.+|+||||+|||++|
T Consensus 272 ---------------------~-~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g~GlGL~i~~~iv 323 (348)
T PRK11073 272 ---------------------L-HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLI 323 (348)
T ss_pred ---------------------c-CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCCccCCHHHHHHHH
Confidence 0 00011123679999999999999999999999853 2469999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
+.|||+|+++|.++ ||+|++.||+
T Consensus 324 ~~~gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 324 DQHSGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred HHcCCeEEEEecCC-ceEEEEEEec
Confidence 99999999999887 4999999996
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=4.1e-25 Score=271.59 Aligned_cols=214 Identities=25% Similarity=0.508 Sum_probs=183.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
...+|+++++|||||||+.|.|+++++... ..+++..+.+..|.+.+.+|..++++++++++.+... ..++++..
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~ 463 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNA 463 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHH
Confidence 356899999999999999999999998654 4556677888999999999999999999999876433 46899999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC-CCcEEEEeeccccCCCCCCccCCc
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
+++++...+...+..+++.+.++++++.+ .+.+|+..|.|++.||+.||+||+. .|.|.|.+...
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~------------- 529 (607)
T PRK11360 464 LVEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQY------------- 529 (607)
T ss_pred HHHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEc-------------
Confidence 99999999988888899999888876655 4789999999999999999999976 45666654211
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
++. .+.|+|+|+|+|||++.++++|+||++.+ .+|+||||++||++|+
T Consensus 530 -------------------------~~~-~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~ 577 (607)
T PRK11360 530 -------------------------SDG-QVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGTGLGLALSQRIIN 577 (607)
T ss_pred -------------------------CCC-EEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCCchhHHHHHHHHH
Confidence 111 17899999999999999999999999643 3589999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+|||+|+++|.+|+||+|+++||+..
T Consensus 578 ~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 578 AHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred HcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999853
No 36
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=9e-25 Score=245.71 Aligned_cols=217 Identities=40% Similarity=0.602 Sum_probs=181.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-ccccceeecHH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGK-MELENTEFDLQ 500 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~-~~l~~~~~dL~ 500 (1105)
.+..|++.++||+|||++++.+.++.+... . .......+..+...+.++..++++++++++.+.+. .......+++.
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-L-LDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLA 191 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHH
Confidence 478899999999999999999999865433 1 22255677778889999999999999999998863 44446778899
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCc
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
.++++++..+...+..+++.+....+ .+..+.+|+.++.|+|.||++||+||++.+.|.|.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~------------- 256 (336)
T COG0642 192 ELLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQD------------- 256 (336)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEec-------------
Confidence 99999999999888888888886554 234688999999999999999999999966777654211
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
++ .+.++|.|+|+||+++.++++|+||++.+... .|+||||+|||++++
T Consensus 257 -------------------------~~--~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~----~g~GlGL~i~~~~~~ 305 (336)
T COG0642 257 -------------------------DE--QVTISVEDTGPGIPEEELERIFEPFFRTDKSR----SGTGLGLAIVKRIVE 305 (336)
T ss_pred -------------------------CC--eEEEEEEcCCCCCCHHHHHHhccCeeccCCCC----CCCCccHHHHHHHHH
Confidence 11 57899999999999999999999999876532 299999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
.|||+|.++|.++.||+|++++|...
T Consensus 306 ~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 306 LHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999864
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=8.2e-24 Score=265.56 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=162.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~l 502 (1105)
..++.+.++||||||++.+...++.+......++...+.++.+.++.++|.++++++.+.. ...+..++++.++
T Consensus 475 ~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~l 548 (679)
T TIGR02916 475 FNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDL 548 (679)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHH
Confidence 3568899999999999999998887755443344455677788899999999888775432 2556678999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCCcc
Q 001298 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTD 581 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~~~ 581 (1105)
++++.+.+... ...+++. ++++ ..+.+|+.++.||+.||++||+||+++ |.|.|++...
T Consensus 549 l~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~-------------- 608 (679)
T TIGR02916 549 LRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE-------------- 608 (679)
T ss_pred HHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc--------------
Confidence 99998866543 2333433 3333 368999999999999999999999964 5777764321
Q ss_pred ccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhh-HhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSK-WETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~-l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
...+.|+|.|+|+|||++. .+++|+||++.+ .+|+||||++||++++
T Consensus 609 --------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 609 --------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GAGMGIGVYECRQYVE 656 (679)
T ss_pred --------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CCCcchhHHHHHHHHH
Confidence 1247799999999999999 999999998543 2699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEe
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lp 683 (1105)
.|||+|+++|.+|+||+|++.||
T Consensus 657 ~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 657 EIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred HcCCEEEEEecCCCceEEEEEeC
Confidence 99999999999999999999986
No 38
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.92 E-value=2.9e-22 Score=244.68 Aligned_cols=194 Identities=20% Similarity=0.299 Sum_probs=136.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHH
Q 001298 424 SQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKEL 503 (1105)
Q Consensus 424 s~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll 503 (1105)
.++++.++||+||||++|.|++++... ++..+++.. .+.+....++++++..+ . .++
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~--~-------------~~~ 396 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY-----DQLEDYILK---TANNYQEEIGSLLGKIK--S-------------PVI 396 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch-----HHHHHHHHH---HHHHHHHHHHHHHHhcc--C-------------HHH
Confidence 457788999999999999999986421 222223222 22222233333332111 0 112
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCCceE-EeCHHHHHHHHHHHHhhHhcccC---CCcEEEEeeccccCCCCCCccCC
Q 001298 504 EELVDMFSVQCSNHNVETVLDLSDNIPRNV-RGDPGRVFQIFSNLINNSIKFTS---SGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 504 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~gD~~rL~QIL~NLL~NAIKfT~---~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
...+......+.++++.+.++.++.+|... ..+...|.|||.||++||+||+. .|.|.+....
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------------- 463 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHY------------- 463 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE-------------
Confidence 222222344567789988887765554321 23446899999999999999963 4556655321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
....+.|+|.|+|+|||++.++++|+||+.. +.+|+||||+|||++|
T Consensus 464 ---------------------------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~g~GlGL~iv~~iv 510 (542)
T PRK11086 464 ---------------------------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGSNRGVGLYLVKQSV 510 (542)
T ss_pred ---------------------------cCCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCCCCcCcHHHHHHHH
Confidence 1124779999999999999999999999843 2459999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+.|||+|+++|.+|+||+|+|+||+..
T Consensus 511 ~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 511 ENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred HHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 999999999999999999999999864
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=268.42 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001298 412 ARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491 (1105)
Q Consensus 412 a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~ 491 (1105)
+.++++++.+.|++|+++|||||||||++|.|+++++.... .+++....+..+......+..+++.++..
T Consensus 594 aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 663 (807)
T PRK13560 594 AEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKL-HDEEAKCAFAESQDRICAMALAHEKLYQS--------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 33445566777999999999999999999999999876433 34444455544444444444444443321
Q ss_pred ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC----CcEEEEeecc
Q 001298 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCE 567 (1105)
Q Consensus 492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~ 567 (1105)
....++++.+++++++..+...+..+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|....
T Consensus 664 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~- 742 (807)
T PRK13560 664 EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE- 742 (807)
T ss_pred ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE-
Confidence 234578999999999998887776666556555544433333456677899999999999999843 456654321
Q ss_pred ccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001298 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647 (1105)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 647 (1105)
.+...+.|+|.|||+|||++.. ...|
T Consensus 743 --------------------------------------~~~~~v~i~V~D~G~GI~~~~~----------------~~~~ 768 (807)
T PRK13560 743 --------------------------------------QGDGMVNLCVADDGIGLPAGFD----------------FRAA 768 (807)
T ss_pred --------------------------------------cCCCEEEEEEEeCCCcCCcccc----------------cccc
Confidence 1123578999999999998731 1236
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 648 tGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+||||+|||+||+.|||+|+|+|. +||+|+|+||+..
T Consensus 769 ~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 769 ETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred CCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 789999999999999999999994 7999999999853
No 40
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.91 E-value=3.6e-22 Score=229.64 Aligned_cols=206 Identities=19% Similarity=0.330 Sum_probs=165.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhcC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 426 FLANMSHELRTPMAAIIGLLEILKSD--DQLTN---EQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 426 Fla~~SHELRTPL~~I~G~~elL~~~--~~l~~---e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
-..-++||||+||+-|.-.+|-|... ...++ .-.++.+.|.+....+.+|+++.-+|+|+-. ++.++.||.
T Consensus 489 VArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~~dL~ 564 (712)
T COG5000 489 VARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEKSDLR 564 (712)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcchHH
Confidence 45578999999999999999998643 23333 1235677799999999999999999999754 455689999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC--------cEEEEeeccccCCC
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--------HIIIRGWCENLDTS 572 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--------~i~v~~~~~~~~~~ 572 (1105)
+++.+++..++.. ..++.+..++..+ |....+|+..|.|+|.||+.||..+-..- .|+++.
T Consensus 565 ~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~-------- 633 (712)
T COG5000 565 ALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL-------- 633 (712)
T ss_pred HHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE--------
Confidence 9999998776543 4677888888766 77788899999999999999999985421 121111
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
.+....+++.|.|||.|.|.+.+.++||||.. .+..||||||
T Consensus 634 --------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvT------tr~KGTGLGL 675 (712)
T COG5000 634 --------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVT------TREKGTGLGL 675 (712)
T ss_pred --------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCcee------cccccccccH
Confidence 12223588999999999999999999999973 3456999999
Q ss_pred HHHHHHHHHcCCEEEEEEeC-CCceEEEEEEec
Q 001298 653 SIVRTLVNKMGGEIKVVKKN-SPGTLMQLYLLL 684 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~-g~GT~f~~~lpl 684 (1105)
+|||+|||-|||.|.+...+ -.|.++++.||.
T Consensus 676 AiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 676 AIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred HHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 99999999999999999984 459999999986
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=1.8e-21 Score=234.91 Aligned_cols=196 Identities=16% Similarity=0.290 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+.+.++.+.+.||+||||++|.+.++++++....+++..+..+.|.+.+.++.+.++++++..+- ...+++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 455678899999999999999999999886543334445567778899999999999999875542 22447899
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
.+.+++++..+.......++++..+.++. + ...+|+..+.|++.|+++||+||++.|.|.+.....
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~~-~-l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDES-A-LSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCcc-c-CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 99999999887655544445554443332 2 356788899999999999999999988877764211
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
...+.++|+|+|+|||+++ .|+|+||+|||+++
T Consensus 439 ----------------------------~~~i~l~V~DnG~Gi~~~~-------------------~~~GLGL~ivr~iv 471 (495)
T PRK11644 439 ----------------------------DERLMLVIEDDGSGLPPGS-------------------GQQGFGLRGMRERV 471 (495)
T ss_pred ----------------------------CCEEEEEEEECCCCCCcCC-------------------CCCCCcHHHHHHHH
Confidence 1247899999999998652 36799999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEec
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
+.|||+|+++| ++||+|++.+|.
T Consensus 472 ~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 472 TALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred HHcCCEEEEEc--CCCEEEEEEEeC
Confidence 99999999999 889999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=5.2e-21 Score=234.39 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=145.7
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHH
Q 001298 425 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504 (1105)
Q Consensus 425 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~ 504 (1105)
+.+..++||+++||++|.|++++-. ..+....|...+.++..+++++...-+. ..+..
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~--------~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~ 397 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE--------YDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAG 397 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch--------hhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHH
Confidence 4567789999999999999887521 1235666778888888888887764221 11222
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCC-ceEEeCHHHHHHHHHHHHhhHhccc---CCC--cEEEEeeccccCCCCCCccC
Q 001298 505 ELVDMFSVQCSNHNVETVLDLSDNIP-RNVRGDPGRVFQIFSNLINNSIKFT---SSG--HIIIRGWCENLDTSKNTAEF 578 (1105)
Q Consensus 505 ~v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~gD~~rL~QIL~NLL~NAIKfT---~~G--~i~v~~~~~~~~~~~~~~~~ 578 (1105)
.+......+.++++.+.+..+.... ....+|+..|.|||.||++||+||. ++| .|.+.+..
T Consensus 398 -~l~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------ 464 (545)
T PRK15053 398 -LLFGKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------ 464 (545)
T ss_pred -HHHHHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------------
Confidence 2222245567788888776543321 1246799999999999999999994 333 45443211
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001298 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
....+.|+|.|+|+|||++.+++||++||+.+ .+..+|+||||+|||++
T Consensus 465 ----------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~GlGL~ivk~i 513 (545)
T PRK15053 465 ----------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEHGIGLYLIASY 513 (545)
T ss_pred ----------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCceeCHHHHHHH
Confidence 12247799999999999999999999999643 23456899999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 659 Ve~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|+.|||+|+++|.+|.||+|++.||...
T Consensus 514 v~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 514 VTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 9999999999999999999999999754
No 43
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=3.3e-21 Score=208.78 Aligned_cols=121 Identities=33% Similarity=0.511 Sum_probs=112.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..+...|+..||.|..+.+|++|++.+.. . ||+|++|++||.|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~-~dlviLD~~lP~~ 56 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-----------------------Q-PDLVLLDLMLPDL 56 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------C-CCEEEEECCCCCC
Confidence 379999999999999999999999999999999999999852 4 9999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
||+++|++||+. .. ..+|||+|||..+..++..++++||||||+|||++++|.++|+.++++...
T Consensus 57 dG~~~~~~iR~~-~~---~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 57 DGLELCRRLRAK-KG---SGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CHHHHHHHHHhh-cC---CCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999965 22 458999999999999999999999999999999999999999999998753
No 44
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.86 E-value=1e-19 Score=202.05 Aligned_cols=211 Identities=18% Similarity=0.289 Sum_probs=173.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHH
Q 001298 425 QFLANMSHELRTPMAAIIGLLEILKS--DDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502 (1105)
Q Consensus 425 ~Fla~~SHELRTPL~~I~G~~elL~~--~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~l 502 (1105)
+=+.++||||..||+++..|+=.... +...+.....+++.|..-.+|+-.+|+.+-.|+|-.+++-. ..+++|.++
T Consensus 453 qTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L~~~ 530 (673)
T COG4192 453 QTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRLNSV 530 (673)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccHHHH
Confidence 45678999999999999988754321 23345666788999999999999999999999998777644 458999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC--cEEEEeeccccCCCCCCccCCc
Q 001298 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--HIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
++.+.+.+..+.+.+.+.+....+ .+ +|.||..+++|||.||+-||+..+..- .|.+.+
T Consensus 531 v~~AweLl~~khk~rQ~~Li~ptD--~~-~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~---------------- 591 (673)
T COG4192 531 VEQAWELLQTKHKRRQIKLINPTD--DL-MVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIA---------------- 591 (673)
T ss_pred HHHHHHHHHhhhhhccccccCCcc--cc-eecchhhhHHHHHHHHHHHHHhhhccCCceEEEEe----------------
Confidence 999999999999998888876542 22 699999999999999999999986533 333321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
..++...+++-|.|+|.|.|-+-.+++|.||. +.+.-|.||||+||.+|++
T Consensus 592 -----------------------~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFt------tsK~vgLGlGLSIsqSlme 642 (673)
T COG4192 592 -----------------------LGTEQEMLRIAIIDNGQGWPHELVDKLLTPFT------TSKEVGLGLGLSISQSLME 642 (673)
T ss_pred -----------------------ecCcccceEEEEecCCCCCchhHHHHhcCCcc------cccccccccchhHHHHHHH
Confidence 11233457899999999999999999999996 3345699999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
.|.|++.+.|...+|.++.+.|...
T Consensus 643 qmqG~l~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 643 QMQGRLALASTLTKNAMVILEFQVD 667 (673)
T ss_pred HhcCcchHhhhcccCcEEEEEEeec
Confidence 9999999999999999988887653
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.83 E-value=1e-17 Score=193.65 Aligned_cols=194 Identities=25% Similarity=0.402 Sum_probs=141.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHH
Q 001298 425 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504 (1105)
Q Consensus 425 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~ 504 (1105)
+-+...+||.++=|+.|.|++++=. -++..+++. +.++.=...++.+.. ++. ...+.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-----yd~a~~~I~---~~~~~qq~~~~~l~~--~i~-------------~~~lA 391 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-----YDDALDYIQ---QESEEQQELIDSLSE--KIK-------------DPVLA 391 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-----HHHHHHHHH---HHHhhhhhhHHHHHH--hcc-------------cHHHH
Confidence 4677889999999999999999621 123333333 333333333333321 111 23455
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCc-eEEeCHHHHHHHHHHHHhhHhcccC---C-CcEEEEeeccccCCCCCCccCC
Q 001298 505 ELVDMFSVQCSNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTS---S-GHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 505 ~v~~~~~~~a~~k~i~l~~~~~~~~p~-~v~gD~~rL~QIL~NLL~NAIKfT~---~-G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
.++---..+|+++|+.+.++....+|. .-.-++.-+--|+.|||+||+..+- + ..|.+..
T Consensus 392 g~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i--------------- 456 (537)
T COG3290 392 GFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSL--------------- 456 (537)
T ss_pred HHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEE---------------
Confidence 555555678999999999987765542 2356899999999999999999864 2 2344332
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
.+....+.++|.|||||||++.+++||+.-|.. +..+|.|.||++||++|
T Consensus 457 -------------------------~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~St-----k~~~~rGiGL~Lvkq~V 506 (537)
T COG3290 457 -------------------------SDRGDELVIEVADTGPGIPPEVRDKIFEKGVST-----KNTGGRGIGLYLVKQLV 506 (537)
T ss_pred -------------------------EecCCEEEEEEeCCCCCCChHHHHHHHhcCccc-----cCCCCCchhHHHHHHHH
Confidence 122345889999999999999999999987632 22478999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+.+||.|+++|..+.||+|++++|...
T Consensus 507 ~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 507 ERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred HHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999754
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=4.4e-18 Score=197.58 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=138.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~l 502 (1105)
+.+|++.++||+||||+.|.|+++++... .+...++..|...+.+|.++++++|+.++ ..++++.++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~----~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 45799999999999999999999987522 22334567788889999999999987654 347899999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeC-HHHHHHHHHHHHhhHhcc---cC-CCcEEEEeeccccCCCCCCcc
Q 001298 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD-PGRVFQIFSNLINNSIKF---TS-SGHIIIRGWCENLDTSKNTAE 577 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rL~QIL~NLL~NAIKf---T~-~G~i~v~~~~~~~~~~~~~~~ 577 (1105)
++.++..+... +..+.++.+ .+ .+..+ ...|.|||.||+.||+|| ++ .|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998766432 444554432 11 22222 246999999999999999 43 56777654111
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001298 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657 (1105)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 657 (1105)
.....+.+.|.|+|.|++++ ..|+|+||.||++
T Consensus 300 ----------------------------~~~~~~~i~v~d~G~~~~~~-------------------~~~~g~Gl~i~~~ 332 (361)
T PRK13559 300 ----------------------------PEGAGFRIDWQEQGGPTPPK-------------------LAKRGFGTVIIGA 332 (361)
T ss_pred ----------------------------CCCCeEEEEEECCCCCCCCC-------------------CCCCCcHHHHHHH
Confidence 11124779999999997653 2378999999999
Q ss_pred HHHH-cCCEEEEEEeCCCceEEEEEEecC
Q 001298 658 LVNK-MGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 658 LVe~-~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+|+. |||+|++++. +.||+|+|+||+.
T Consensus 333 ~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 333 MVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred HHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 9987 9999999987 6799999999964
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.78 E-value=7.9e-19 Score=168.83 Aligned_cols=109 Identities=36% Similarity=0.582 Sum_probs=96.5
Q ss_pred eCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 613 (1105)
||+.+|+++|.||++||++|+++ |.|.|.+... ...+.|
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~----------------------------------------~~~~~i 40 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED----------------------------------------DDHLSI 40 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE----------------------------------------TTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe----------------------------------------cCeEEE
Confidence 79999999999999999999976 7787765321 124789
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 614 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 614 ~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
+|.|+|.|||++.++++|++|++.+. .....+|+||||++|+.++++|+|+|++++.+++||+|+|.+|+
T Consensus 41 ~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 41 EISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp EEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred EEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 99999999999999999999998876 33445789999999999999999999999999999999999997
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.75 E-value=8.4e-17 Score=198.05 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=141.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHH----HhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 426 FLANMSHELRTPMAAIIGLLEI----LKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 426 Fla~~SHELRTPL~~I~G~~el----L~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
..+.++||+++|++.+..++.. +... ....++..+.+..+.....++.+.+.+++...+ +...++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHH
Confidence 3456999999999888776653 3322 122344556677777777788888888876544 334578999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCc
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPT 580 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~ 580 (1105)
+.+++++..+.... ++.+.++.+........+++.++.|++.||+.||+||++.|.+.+..+..
T Consensus 436 ~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------- 499 (565)
T PRK10935 436 SALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------- 499 (565)
T ss_pred HHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-------------
Confidence 99999998877542 33444333211111223455679999999999999999988887765321
Q ss_pred cccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHH
Q 001298 581 DRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe 660 (1105)
....++|+|.|+|+|||++. ..|+||||+||+++++
T Consensus 500 --------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~~~glGL~i~~~iv~ 535 (565)
T PRK10935 500 --------------------------PDGEHTVSIRDDGIGIGELK------------------EPEGHYGLNIMQERAE 535 (565)
T ss_pred --------------------------CCCEEEEEEEECCcCcCCCC------------------CCCCCcCHHHHHHHHH
Confidence 11247899999999998732 2378999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 661 KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 661 ~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
.|||+|+++|.+++||+|++.||...
T Consensus 536 ~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 536 RLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred HcCCEEEEEECCCCcEEEEEEECCCC
Confidence 99999999999999999999999753
No 49
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.74 E-value=7.8e-17 Score=185.91 Aligned_cols=224 Identities=22% Similarity=0.269 Sum_probs=164.7
Q ss_pred CCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 777 ~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.+...+++|..++++++.-....+.....+ +.+.........+......|.+..++||.....+..........
T Consensus 31 ~~~~~~lld~~m~~~~~~~~~~~lk~~~~~------~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 31 HKPDYKLLDVMMPGMDGFELCRRLKAEPAT------VVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCCeEEeecccCCcCchhHHHHHhcCCcc------eEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 456678899999999886655554443322 33444444444556667778888899999887766655443322
Q ss_pred ccccccccccccCCCCCCcccccccccccccchhcccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCC
Q 001298 857 KILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSS 936 (1105)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1105)
+... + +......+......++
T Consensus 105 k~~~---------------------------------------------------d--------e~~~~~~~~~~~~~~~ 125 (435)
T COG3706 105 KCSI---------------------------------------------------D--------ELRLREETGGELGVSP 125 (435)
T ss_pred hhhH---------------------------------------------------H--------HHhhcccccccccccc
Confidence 1000 0 0000000000000000
Q ss_pred CCCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCC
Q 001298 937 SNSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPR 1016 (1105)
Q Consensus 937 ~~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1016 (1105)
-. ......+||+|||+..++..++.+|...|+.+..+.+|++|+..+.+ .+
T Consensus 126 ~~------~~~~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-----------------------~~ 176 (435)
T COG3706 126 LL------PEDAPKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-----------------------LP 176 (435)
T ss_pred cc------ccccCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-----------------------CC
Confidence 00 00034799999999999999999999999999999999999999863 38
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1017 FDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1017 ~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
||+||.|+.||+|||||+|+++|+.... ..+|||++|+..+.....+++++|++||++||+...+|..++++.+++.
T Consensus 177 ~dlil~d~~mp~~dg~el~~~lr~~~~t---~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 177 PDLVLLDANMPDMDGLELCTRLRQLERT---RDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred CcEEEEecCCCccCHHHHHHHHhccccc---ccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998653 5799999999999999999999999999999999999999999988776
Q ss_pred C
Q 001298 1097 P 1097 (1105)
Q Consensus 1097 ~ 1097 (1105)
.
T Consensus 254 ~ 254 (435)
T COG3706 254 R 254 (435)
T ss_pred h
Confidence 5
No 50
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-17 Score=183.67 Aligned_cols=121 Identities=31% Similarity=0.512 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
..++||+|||.+.++..+..+|+..||.+..|++|++|++.... +++|+||+|++||
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-----------------------~~~dlvllD~~mp 69 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-----------------------EPPDLVLLDVRMP 69 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-----------------------cCCceEEeeccCC
Confidence 45799999999999999999999999999999999999998753 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
.|||+|+|.+|+...+. ..++||+++||.++.++..+|+++|+++||.||+++.+|..++...+
T Consensus 70 ~mdg~ev~~~lk~~~p~--t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 70 EMDGAEVLNKLKAMSPS--TRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred CccHHHHHHHHHhcCCc--ccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999985443 46899999999999999999999999999999999999999997655
No 51
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=2.5e-16 Score=150.69 Aligned_cols=111 Identities=32% Similarity=0.553 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 952 ILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
||||||++..+..++..|+..|+ .|..+.++.+|++.+.. ..||+|++|+.||.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~iiid~~~~~~~ 57 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-----------------------HPPDLIIIDLELPDGD 57 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-----------------------STESEEEEESSSSSSB
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-----------------------cCceEEEEEeeecccc
Confidence 79999999999999999999999 99999999999999975 4699999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1090 (1105)
|.+++++||+.. +++|||++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 58 ~~~~~~~i~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 58 GLELLEQIRQIN-----PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHHHHHT-----TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccccccccc-----ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999864 4699999999999999999999999999999999999999874
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.70 E-value=1.9e-15 Score=186.47 Aligned_cols=185 Identities=19% Similarity=0.287 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHHHHHHHHH
Q 001298 434 LRTPMAAIIGLLEILKSD-DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSV 512 (1105)
Q Consensus 434 LRTPL~~I~G~~elL~~~-~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~ 512 (1105)
+..+|+.+...+..+... ...+++..+.+..|.....++...+.++|...+.+ ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 334556666555544322 33456677788889999999999999999877643 3457888999999888765
Q ss_pred HHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhh
Q 001298 513 QCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTK 592 (1105)
Q Consensus 513 ~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1105)
.. ++.+.++...........++..+.||+.|+++||+||++.+.|.|.+...
T Consensus 446 ~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------- 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------- 497 (569)
T ss_pred Hh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-------------------------
Confidence 54 33444443221111112245569999999999999999888877764211
Q ss_pred hhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 593 LKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
...+.|+|.|+|+|||++. ..|+|+||+||+++++.|||+|.++|.+
T Consensus 498 ---------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~~lgG~l~i~s~~ 544 (569)
T PRK10600 498 ---------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQSLRGDCRVRRRE 544 (569)
T ss_pred ---------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHHHcCCEEEEEECC
Confidence 1247899999999999853 1267999999999999999999999999
Q ss_pred CCceEEEEEEecCC
Q 001298 673 SPGTLMQLYLLLGA 686 (1105)
Q Consensus 673 g~GT~f~~~lpl~~ 686 (1105)
++||+|+++||...
T Consensus 545 ~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 545 SGGTEVVVTFIPEK 558 (569)
T ss_pred CCCEEEEEEEecCC
Confidence 99999999998753
No 53
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.69 E-value=1.9e-16 Score=184.14 Aligned_cols=118 Identities=32% Similarity=0.536 Sum_probs=111.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..|..+..+|+..||.|..+.|+.+|++.+.. ..||+|++|+.||+|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-----------------------~~~~lvl~Di~mp~~ 61 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-----------------------SPFDLVLLDIRMPGM 61 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 479999999999999999999999999999999999999964 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
||++++++|++.. +++|||++|+|.+.+...+|++.||-|||.|||+++.|...|.+.++.
T Consensus 62 ~Gl~ll~~i~~~~-----~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 62 DGLELLKEIKSRD-----PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred chHHHHHHHHhhC-----CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 9999999999863 469999999999999999999999999999999999999999999864
No 54
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-16 Score=185.22 Aligned_cols=119 Identities=23% Similarity=0.482 Sum_probs=108.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHH--hcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 950 LRILLAEDTPLIQIVACKILE--KVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~--~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+||||||.+..|+.|+.++. +.|++| -.|.||+||++.++. .+||+||+|+.|
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-----------------------~~pDiviTDI~M 58 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-----------------------TQPDIVITDINM 58 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-----------------------cCCCEEEEecCC
Confidence 479999999999999999985 678865 579999999999975 489999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+|||+++.+.||+.. +.+.+|+||++.+-+...+|++.|++|||.||++.++|.+++.++....
T Consensus 59 P~mdGLdLI~~ike~~-----p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 59 PGMDGLDLIKAIKEQS-----PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred CCCcHHHHHHHHHHhC-----CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 9999999999999853 4588999999999999999999999999999999999999999887544
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.69 E-value=6.5e-16 Score=151.72 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=106.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL-QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~-eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+.+||+|||++.++..+..+|+..|+.+..+.+|. +|++.++.. ..||+|++|++|
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~----------------------~~~dlii~D~~m 61 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL----------------------PQPDLILLDINM 61 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC----------------------CCCCEEEEeCCC
Confidence 357999999999999999999999999999999996 999999641 149999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~-L~~~I~~l~~~ 1095 (1105)
|.|||+++++++|+. ...+|||++|++.......+++++|+++|+.||+...+ |..++...+..
T Consensus 62 p~~~G~~~~~~l~~~-----~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 62 PGMDGIELLRRLRAR-----GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCCCHHHHHHHHHhC-----CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 999999999999975 24588999999999988888999999999999977666 78877766543
No 56
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.64 E-value=2.7e-15 Score=161.15 Aligned_cols=118 Identities=30% Similarity=0.444 Sum_probs=106.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcC-CE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVG-AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g-~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+||||||+|..|..++.+|+..+ ++ +..+.||.++++.+.. .+||+|+||+.||+
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-----------------------~~pdvvl~Dl~mP~ 58 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-----------------------LKPDVVLLDLSMPG 58 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-----------------------cCCCEEEEcCCCCC
Confidence 69999999999999999998776 66 4567889999998653 58999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|||+|+++.||+.. ++++||++|++.+.....+++++|+++|+.|+.+.++|..+|+.+..+.
T Consensus 59 ~~G~e~~~~l~~~~-----p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 59 MDGLEALKQLRARG-----PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred CChHHHHHHHHHHC-----CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999542 5689999999999999999999999999999999999999999987655
No 57
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.62 E-value=3e-15 Score=151.37 Aligned_cols=120 Identities=19% Similarity=0.295 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..-|-||||+...|+.+..+|+..||+|.+..++++-+.... ...|-++|+|+.||+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-----------------------~~~pGclllDvrMPg 60 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-----------------------LDRPGCLLLDVRMPG 60 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-----------------------CCCCCeEEEecCCCC
Confidence 357999999999999999999999999999999999888742 347899999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+|.|+-+++++.. ..+|||++|+|.+.....+++++||-|||.|||+.+.|+++|.+.+...
T Consensus 61 ~sGlelq~~L~~~~-----~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 61 MSGLELQDRLAERG-----IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred CchHHHHHHHHhcC-----CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999752 4599999999999999999999999999999999999999999988653
No 58
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.62 E-value=3.6e-14 Score=169.35 Aligned_cols=269 Identities=17% Similarity=0.201 Sum_probs=176.1
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.......+..+..++...+.....+.........+. ..+..++
T Consensus 5 ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 50 (457)
T PRK09581 5 ILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE----------------------------------REQPDII 50 (457)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh----------------------------------hcCCCEE
Confidence 455566666666677777666655544443333222211 1234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhccccccc
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGMQ 862 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~~ 862 (1105)
++|..+++.++...-+.++... ......+.+..............+.|...++.||+....+...+..+.........
T Consensus 51 i~d~~~~~~~g~~l~~~i~~~~--~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~ 128 (457)
T PRK09581 51 LLDVMMPGMDGFEVCRRLKSDP--ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKMVIDE 128 (457)
T ss_pred EEeCCCCCCCHHHHHHHHHcCc--ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899888887644444333211 11112223333333334456667788999999999999998887765432210000
Q ss_pred ccccccCCCCCCcccccccccccccchhcccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCcc
Q 001298 863 NRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSSN 942 (1105)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1105)
.. . +. .... ... +..... ..
T Consensus 129 ~~--------------~-------------~~-----------~~~~-~~~-----~~~~~~----------------~~ 148 (457)
T PRK09581 129 LR--------------L-------------RA-----------STNA-EIG-----VTALMI----------------MA 148 (457)
T ss_pred HH--------------h-------------hc-----------ccCc-chh-----hHHhhc----------------cc
Confidence 00 0 00 0000 000 000000 00
Q ss_pred ccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 943 QKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 943 ~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
........+||+|||++..+..+..+|.. ++.+..+.++.+|++.+. ..+||+|++
T Consensus 149 ~~~~~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-----------------------~~~~d~vi~ 204 (457)
T PRK09581 149 YANKDEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-----------------------ETNYDLVIV 204 (457)
T ss_pred ccccccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-----------------------cCCCCEEEe
Confidence 01112346899999999999999999975 577888999999999874 357999999
Q ss_pred cCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1023 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1023 Di~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+.||.|||++++++||+... .+++|||++|++.+.+...+|+++|++|||.||++.++|...|....+
T Consensus 205 d~~~p~~~g~~l~~~i~~~~~---~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 205 SANFENYDPLRLCSQLRSKER---TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred cCCCCCchHhHHHHHHHhccc---cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 999999999999999997532 257999999999999999999999999999999999999999876543
No 59
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.60 E-value=2.4e-14 Score=175.65 Aligned_cols=146 Identities=19% Similarity=0.368 Sum_probs=109.6
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHH---HHHHHhhHhcccC-------------CCcE
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFTS-------------SGHI 560 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QI---L~NLL~NAIKfT~-------------~G~i 560 (1105)
+.+..+++.....++..+...+.++.+.+... .+..|+..+.++ |.||+.||++|.- .|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 33556666666666666665555555555443 257899999998 6799999999962 3556
Q ss_pred EEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHh------------
Q 001298 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE------------ 628 (1105)
Q Consensus 561 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~------------ 628 (1105)
.+++.. ....+.|+|.|+|.||+++.+.
T Consensus 420 ~l~a~~----------------------------------------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~ 459 (670)
T PRK10547 420 ILSAEH----------------------------------------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSE 459 (670)
T ss_pred EEEEEE----------------------------------------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccc
Confidence 554321 1124779999999999997653
Q ss_pred ---------hhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 629 ---------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 629 ---------~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
.||+|||..... .+..+|.|+||+|||++++.|||+|.++|.+|+||+|++.||+..
T Consensus 460 ~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 460 NMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred cCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 699997754322 234579999999999999999999999999999999999999864
No 60
>PLN03029 type-a response regulator protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=157.38 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=108.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.++||||||++.++..+..+|+..||.|..+.+|.+|++.+....... +... ........+....||+||+|+.||.
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~-~~p~--~~~~~~~~~~~~~~dlVllD~~mp~ 84 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDR-SNPD--TPSVSPNSHQEVEVNLIITDYCMPG 84 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccc-cccc--cccccccccccccCCEEEEcCCCCC
Confidence 479999999999999999999999999999999999999885310000 0000 0000011112346899999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
|+|+++++.||+... ..++|||++|+....+...+|+++|+++||.||++..+|...+..+
T Consensus 85 ~~G~e~l~~ir~~~~---~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 85 MTGYDLLKKIKESSS---LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred CCHHHHHHHHHhccc---cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 999999999997532 2468999999999999999999999999999999999987665443
No 61
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.57 E-value=4.2e-14 Score=153.69 Aligned_cols=117 Identities=24% Similarity=0.314 Sum_probs=105.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..+..+|+.. |+. |..+.++.+|++.+.. ..||+||+|+.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-----------------------~~pdlvllD~~m 60 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----------------------FKPGLILLDNYL 60 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 368999999999999999999864 774 6789999999998864 479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
|+|+|+++++.||+.. ..+|||++|++...+...+++++|+++|+.||++.++|..+|+++.
T Consensus 61 p~~~gle~~~~l~~~~-----~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 61 PDGRGINLLHELVQAH-----YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 9999999999999742 3478999999999999999999999999999999999999998763
No 62
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.56 E-value=3.3e-14 Score=146.75 Aligned_cols=117 Identities=26% Similarity=0.417 Sum_probs=105.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++...++-+.+++.. ||. |-.|.+++||...+.. ..|||||+|+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-----------------------~~pDLILLDiYmP 57 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-----------------------FKPDLILLDIYMP 57 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-----------------------hCCCEEEEeeccC
Confidence 37999999999999999999875 776 5679999999999974 3679999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+.+|++++..||+.. ..+-||++||-++.+.+.+++..|+-|||.|||..+.|.+++.++.+
T Consensus 58 d~~Gi~lL~~ir~~~-----~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 58 DGNGIELLPELRSQH-----YPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred CCccHHHHHHHHhcC-----CCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 999999999999742 34679999999999999999999999999999999999999988764
No 63
>PRK11173 two-component response regulator; Provisional
Probab=99.56 E-value=7.3e-14 Score=152.23 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 60 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------NDINLVIMDINLPGK 60 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+. ..+|||++|++........++++|+++|+.||++.++|..++..++++.
T Consensus 61 ~g~~~~~~lr~~------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CHHHHHHHHhcC------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999963 2489999999999999999999999999999999999999999988764
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.55 E-value=8.4e-14 Score=149.99 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=108.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+|++|+.||.+
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 58 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------------------RKPDLIILDLGLPDG 58 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999987743 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+. ..+|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 59 ~g~~~~~~lr~~------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 59 DGIEFIRDLRQW------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999963 3589999999999999999999999999999999999999999988764
No 65
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.55 E-value=8.8e-14 Score=149.77 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=109.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~ 57 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-----------------------HLPDIAIVDLGLPDE 57 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+.. +++|||++|++.+.+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~l~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 4589999999999999999999999999999999999999999998765
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.54 E-value=1.4e-13 Score=148.64 Aligned_cols=119 Identities=24% Similarity=0.439 Sum_probs=109.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||++||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~~~~~ 57 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-----------------------GDYDLIILDIMLPDV 57 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999987753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.+|+.. +.+|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 58 NGWDIVRMLRSAN-----KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 4589999999999999999999999999999999999999999988754
No 67
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.52 E-value=2.2e-13 Score=146.27 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=108.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-----------------------QHVDLILLDINLPGE 59 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999988753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+. ..+|||++|+..+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 60 DGLMLTRELRSR------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CHHHHHHHHHhC------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999963 2589999999999999999999999999999999999999999888664
No 68
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.52 E-value=2.8e-13 Score=147.53 Aligned_cols=121 Identities=24% Similarity=0.422 Sum_probs=110.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+|||+||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~ 61 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-----------------------ESFHLMVLDLMLPG 61 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999988753 47999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|+++++.||+.. +++|||++|+....+....++++|+++|+.||++.++|..++..++++..
T Consensus 62 ~~g~~~~~~lr~~~-----~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~ 125 (239)
T PRK09468 62 EDGLSICRRLRSQN-----NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQA 125 (239)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999999999742 35899999999999999999999999999999999999999999987653
No 69
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-14 Score=151.80 Aligned_cols=117 Identities=32% Similarity=0.533 Sum_probs=105.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++|+||||+......+..+|++.|..+..+....+|++.+.. ..|||||+|+.||.|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-----------------------~kpDLifldI~mp~~ 57 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-----------------------FKPDLIFLDIVMPYM 57 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh-----------------------cCCCEEEEEeecCCc
Confidence 379999999999999999999999999999999999999974 579999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+|+.+++|..++ .+|||++|+|+.-.+ .++....+|||.||++++.|..+|.++.++.
T Consensus 58 ngiefaeQvr~i~~-----~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 58 NGIEFAEQVRDIES-----AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred cHHHHHHHHHHhhc-----cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 99999999998763 599999999976543 4556666999999999999999999998765
No 70
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.51 E-value=3.3e-13 Score=144.48 Aligned_cols=119 Identities=25% Similarity=0.399 Sum_probs=108.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||+|||++..+..+..+|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~illd~~~~~~ 57 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-----------------------GHYSLVVLDLGLPDE 57 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.+|+.. +++|||++|++...+....++++|+++|+.||++.++|..++..+.++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 58 DGLHLLRRWRQKK-----YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999642 4589999999999999999999999999999999999999999888654
No 71
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.51 E-value=4.2e-13 Score=143.83 Aligned_cols=121 Identities=33% Similarity=0.516 Sum_probs=110.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+|||+||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vi~d~~~~~~ 59 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-----------------------RGPDLILLDWMLPGT 59 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-----------------------cCCCEEEEECCCCCC
Confidence 589999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+... .+.+|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 60 SGIELCRRLRRRPE---TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred cHHHHHHHHHcccc---CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999997532 24589999999999999999999999999999999999999999988764
No 72
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.51 E-value=3.4e-13 Score=145.83 Aligned_cols=121 Identities=32% Similarity=0.509 Sum_probs=110.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||+|||++..+..+...|+..|+++..+.++.+|++.+.. ..||+|++|+.||.+
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 59 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-----------------------PWPDLILLDWMLPGG 59 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+... .+.+|||++|++.+.....+++++|+++|+.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 60 SGIQFIKHLKRESM---TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999997432 24689999999999999999999999999999999999999999988764
No 73
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.50 E-value=4.1e-13 Score=146.48 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=108.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.++
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-----------------------~~~dlvild~~l~~~~ 59 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-----------------------EQPDLVLLDIMLPGKD 59 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998853 4799999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+++++.||+. ..+|||++|++.......+++++|+++|+.||++.++|..++..++++.
T Consensus 60 g~~~~~~ir~~------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 60 GMTICRDLRPK------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred HHHHHHHHHhc------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999972 2479999999999988999999999999999999999999999988764
No 74
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.50 E-value=3.8e-13 Score=147.17 Aligned_cols=117 Identities=19% Similarity=0.353 Sum_probs=106.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
+||+|||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~~ 59 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-----------------------ETVDVVVVDLNLGRED 59 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999998753 4799999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccC-CHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+++++.||+. .++|||++|+.. ......+++++|+++|+.||++.++|..+++.++++.
T Consensus 60 g~~l~~~i~~~------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 60 GLEIVRSLATK------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHHHHHHhc------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999863 358999999854 6677789999999999999999999999999888764
No 75
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.49 E-value=4e-13 Score=147.34 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=102.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh-cCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEK-VGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..+..+|+. .|+.+ ..+.++.+|++.+.. ....||+||+|+.||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------------------~~~~~DlvilD~~~p 60 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------------------SDTPIDLILLDIYMQ 60 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------------------cCCCCCEEEEecCCC
Confidence 4799999999999999999986 46764 578999999998742 124699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
.|||+++++.||+.. +++|||++|++.......+++++|+++|+.||++.++|..+|.++
T Consensus 61 ~~~G~eli~~l~~~~-----~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 61 QENGLDLLPVLHEAG-----CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCcHHHHHHHHhhC-----CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999999999999742 458999999999999999999999999999999999999999763
No 76
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.49 E-value=6.3e-13 Score=142.10 Aligned_cols=119 Identities=31% Similarity=0.433 Sum_probs=108.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..+..+|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~ 57 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-----------------------APYDAVILDLTLPGM 57 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999987753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+.. +.+|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~g~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 58 DGRDILREWREKG-----QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999742 4589999999999999999999999999999999999999999887654
No 77
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.49 E-value=4.4e-13 Score=148.91 Aligned_cols=121 Identities=22% Similarity=0.383 Sum_probs=106.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..+..+|+.. ++.+ ..+.+|.+|++.+.. ..||+|++|+.|
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-----------------------~~~DlvllD~~m 58 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-----------------------QQPDVVVLDIIM 58 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 368999999999999999999864 4554 479999999998863 479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|.|||+++++.||+.... ..+|||++|+........+++++|+++|+.||++.++|..+|.++..+
T Consensus 59 p~~dG~~~l~~i~~~~~~---~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 59 PHLDGIGVLEKLNEIELS---ARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCCCHHHHHHHHHhhccc---cCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999975321 348999999999999999999999999999999999999999988754
No 78
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.49 E-value=4.7e-13 Score=144.58 Aligned_cols=116 Identities=32% Similarity=0.543 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||.++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~------------------------~~~d~vl~d~~~~~~~ 58 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD------------------------DSIDLLLLDVMMPKKN 58 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh------------------------cCCCEEEEeCCCCCCc
Confidence 7999999999999999999999999999999999998763 2599999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+++++.||+.. . +|||++|+........+++++|+++|+.||++.++|..++..++++.
T Consensus 59 g~~~~~~l~~~~-----~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 59 GIDTLKELRQTH-----Q-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred HHHHHHHHHhcC-----C-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 999999999631 2 89999999999988999999999999999999999999999988654
No 79
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.48 E-value=7.5e-13 Score=142.08 Aligned_cols=118 Identities=26% Similarity=0.459 Sum_probs=108.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||+|||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~~~ 57 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-----------------------DDYALIILDIMLPGM 57 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998753 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+. ..+|||++|+....+...+++++|+++|+.||++.++|..+|..++++.
T Consensus 58 ~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 58 DGWQILQTLRTA------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999963 2489999999999999999999999999999999999999999888654
No 80
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.47 E-value=8.5e-13 Score=142.36 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=107.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC--
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-- 1028 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~-- 1028 (1105)
+||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~~~~ 58 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-----------------------RLPDLAIIDIGLGEEI 58 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-----------------------CCCCEEEEECCCCCCC
Confidence 69999999999999999999999999999999999998753 46999999999998
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|+++++.||+.. +++|||++|++...+....++++|+++|+.||++.++|..+|+.++++.
T Consensus 59 ~~g~~~~~~i~~~~-----~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 59 DGGFMLCQDLRSLS-----ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 58999999999742 3589999999999999999999999999999999999999999988764
No 81
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.46 E-value=2.9e-13 Score=160.85 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=92.4
Q ss_pred EEeCHHHHHHHHHHHHhhHhcccCCCc----EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCc
Q 001298 533 VRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 608 (1105)
Q Consensus 533 v~gD~~rL~QIL~NLL~NAIKfT~~G~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1105)
+.++...|.|++.|||+||++|++.++ |.|.+... ..+.
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~-------------------------------------~~~~ 72 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRV-------------------------------------DEGK 72 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc-------------------------------------cCCC
Confidence 456778899999999999999997643 44433110 0122
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001298 609 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 684 (1105)
Q Consensus 609 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~--~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~GT-~f~~~lpl 684 (1105)
..+.|+|.|+|+||+++.++++|++|+.++.... +..||+||||++|+.++++|+|. |+|.|..+.|+ .|+|.|++
T Consensus 73 ~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~i 152 (535)
T PRK04184 73 DHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKI 152 (535)
T ss_pred cEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEe
Confidence 3467999999999999999999999987654322 23478999999999999999997 99999999998 88999887
Q ss_pred CC
Q 001298 685 GA 686 (1105)
Q Consensus 685 ~~ 686 (1105)
..
T Consensus 153 d~ 154 (535)
T PRK04184 153 DT 154 (535)
T ss_pred cc
Confidence 54
No 82
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.44 E-value=1.7e-12 Score=139.52 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 60 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-----------------------QPPDLVILDVGLPDI 60 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999987743 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+.. +++|||++|++........++++|+++|+.||++.++|..+|..++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 61 SGFELCRQLLAFH-----PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 9999999999742 4589999999999888899999999999999999999999999888764
No 83
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.44 E-value=2e-12 Score=138.00 Aligned_cols=118 Identities=27% Similarity=0.456 Sum_probs=107.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1031 (1105)
||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++|
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~~g 57 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-----------------------DDYDLIILDVMLPGMDG 57 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCH
Confidence 5899999999999999999999999999999999998753 47999999999999999
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+++++.||+.. +++|||++|+........+++++|+++|+.||++.++|..++..++++..
T Consensus 58 ~~~~~~l~~~~-----~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 58 WQILQTLRRSG-----KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred HHHHHHHHccC-----CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999999642 45899999999999999999999999999999999999999999886643
No 84
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.44 E-value=1.9e-12 Score=139.64 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=106.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC-E-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~-~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+.. ..||+||+|+.|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~DlvllD~~l 59 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-----------------------LDAHVLITDLSM 59 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCcC
Confidence 36899999999999999999987665 3 6778999999998753 369999999999
Q ss_pred CC---CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PK---MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~---mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+ ++|++++++||+.. +++|||++|++.......+++++|+++|+.||.+.++|..+|+.+..+.
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 60 PGDKYGDGITLIKYIKRHF-----PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CCCCCCCHHHHHHHHHHHC-----CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 99 59999999999642 4589999999999999999999999999999999999999999887543
No 85
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.43 E-value=2.6e-12 Score=139.52 Aligned_cols=119 Identities=29% Similarity=0.510 Sum_probs=108.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.++||++||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~d~illd~~~~~ 62 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-----------------------EQPDLVILDVMMPK 62 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999997753 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|+++++.||+. +++|||++|++........++++|+++|+.||++.++|..++..++++.
T Consensus 63 ~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 63 LDGYGVCQEIRKE------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred CCHHHHHHHHHhc------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999963 3589999999999998899999999999999999999999999887654
No 86
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.42 E-value=3e-12 Score=135.55 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
++||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~ 57 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-----------------------LKPDIVIIDVDIPG 57 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-----------------------cCCCEEEEeCCCCC
Confidence 4799999999999999999999999987 69999999998753 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|+++++.+|+.. +.+|||++|++........++++|+++|+.||++.++|..+|..+.++.
T Consensus 58 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 58 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999742 3478999999999999999999999999999999999999999887653
No 87
>PRK14084 two-component response regulator; Provisional
Probab=99.41 E-value=2.9e-12 Score=140.71 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC-C-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG-A-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g-~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++|||+||++..+..+..+|+..+ + .+..+.++++|++.+.. ..||+||+|++||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~m~ 57 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-----------------------NQYDIIFLDINLM 57 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 479999999999999999999866 3 57789999999998853 3699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|+|+++++.||+.. ..+|||++|++.. ...+++++|+++||.||++.++|..++.++.+.
T Consensus 58 ~~~G~~~~~~i~~~~-----~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 58 DESGIELAAKIQKMK-----EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CCCHHHHHHHHHhcC-----CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999753 3478999998754 466899999999999999999999999988754
No 88
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.40 E-value=4.1e-12 Score=119.52 Aligned_cols=109 Identities=44% Similarity=0.656 Sum_probs=92.1
Q ss_pred eCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 613 (1105)
+|+..|.+++.|++.||+++... +.+.|.++.. ...+.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~----------------------------------------~~~~~i 40 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD----------------------------------------GDHLEI 40 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------CCEEEE
Confidence 57899999999999999999986 6677665321 124779
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 614 EVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 614 ~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
.|.|+|.|++++.++++|.+++.... .....++.|+||++|+++++.|+|++.+.+.++.|++|+|.+|+
T Consensus 41 ~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 41 TVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred EEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 99999999999999999999987553 22335679999999999999999999999988999999999986
No 89
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.38 E-value=5e-12 Score=152.51 Aligned_cols=117 Identities=26% Similarity=0.396 Sum_probs=108.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.|..+.++.+|+..+.. ..||+||+|+.||+|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-----------------------~~~DlvllD~~lp~~ 60 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-----------------------KTPDVLLSDIRMPGM 60 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEECCCCCCC
Confidence 489999999999999999999999999999999999998853 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||+++++.||+.. +.+|||++|++...+....++++|+++|+.||++.++|...|.+++.
T Consensus 61 dgl~~l~~ir~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred CHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 9999999999742 45899999999999999999999999999999999999999987764
No 90
>PRK15115 response regulator GlrR; Provisional
Probab=99.38 E-value=4e-12 Score=152.25 Aligned_cols=120 Identities=29% Similarity=0.453 Sum_probs=109.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-----------------------~~~dlvilD~~lp~ 61 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-----------------------EKVDLVISDLRMDE 61 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCC
Confidence 3689999999999999999999999999999999999998853 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+|+++++.+++.. +.+|||++|++...+...+++++|+++|+.||++.++|..+|..++...
T Consensus 62 ~~g~~ll~~l~~~~-----~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 62 MDGMQLFAEIQKVQ-----PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999642 4589999999999999999999999999999999999999999887643
No 91
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.38 E-value=3.3e-12 Score=124.18 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
..|||||+..+...+.+.|++.||.|..|++..||+..++. .+|...+.|+.|-.-+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-----------------------~~PayAvvDlkL~~gs 67 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-----------------------APPAYAVVDLKLGDGS 67 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-----------------------CCCceEEEEeeecCCC
Confidence 68999999999999999999999999999999999999974 4899999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
|+++.+.||+.. .+..||+||++++....+.+.+.|+++||.||-+.+++..++.+-
T Consensus 68 GL~~i~~lr~~~-----~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 68 GLAVIEALRERR-----ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred chHHHHHHHhcC-----CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 999999999864 458899999999999999999999999999999999999887665
No 92
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=5.6e-12 Score=145.54 Aligned_cols=116 Identities=31% Similarity=0.432 Sum_probs=99.9
Q ss_pred CEEEEEeCCHHHHHHHHHHH-HhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKIL-EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L-~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..+..+| +..|+++. .+.|+++|++.+.+ ..||+|+||+.||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-----------------------~~pDlVllD~~mp 57 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-----------------------QPPDVILMDLEMP 57 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEcCCCC
Confidence 47999999999999999999 46688876 78999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCC--HHHHHHHHhcCCCEEEEcCC---------CHHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPI---------DSERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi---------~~~~L~~~I~~l~~ 1094 (1105)
.|+|++++++||+. ..+|||++|+... .....+|+++|+++|+.||+ ..++|..+|+.+.+
T Consensus 58 ~~~G~e~l~~l~~~------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 58 RMDGVEATRRIMAE------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred CCCHHHHHHHHHHH------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 99999999999863 2489999998754 45666899999999999999 67788888877764
No 93
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.37 E-value=9e-12 Score=131.06 Aligned_cols=116 Identities=17% Similarity=0.324 Sum_probs=103.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..+..+|+.. |+. +..+.++.++++.+.. ..||+|++|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlvi~d~~~~ 58 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-----------------------RGVQVCICDISMP 58 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCC
Confidence 47999999999999999999754 565 5688999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++|+++++.++. .+|||++|++...+....|+++|+++|+.||++.++|..+|..+.++.
T Consensus 59 ~~~g~~~~~~l~~--------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 59 DISGLELLSQLPK--------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CCCHHHHHHHHcc--------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999998862 379999999999999999999999999999999999999999988653
No 94
>PRK09483 response regulator; Provisional
Probab=99.37 E-value=9.8e-12 Score=132.96 Aligned_cols=119 Identities=30% Similarity=0.439 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++|||+||++..+..+..+|+.. |+.+. .+.++.++++.+.. .+||+|++|+.||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 58 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-----------------------NAVDVVLMDMNMP 58 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 47999999999999999999874 78876 78999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++|+++++.||+.. +++|||++|.+.......+++.+|+++|+.||++.++|..+|.++..+.
T Consensus 59 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 59 GIGGLEATRKILRYT-----PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred CCCHHHHHHHHHHHC-----CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999998642 4589999999999999999999999999999999999999999887654
No 95
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.36 E-value=1.5e-11 Score=130.45 Aligned_cols=119 Identities=17% Similarity=0.332 Sum_probs=106.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+.. .+||+|++|+.||
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvild~~l~ 60 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-----------------------RPVDLIIMDIDLP 60 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 58999999999999999999876 57775 68899999988753 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++|+++++.+|+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|..++++.
T Consensus 61 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 61 GTDGFTFLKRIKQIQ-----STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999642 3589999999999899999999999999999999999999998887764
No 96
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.36 E-value=4.2e-12 Score=151.88 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=108.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.++||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~DlvilD~~m~~ 61 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-----------------------QVFDLVLCDVRMAE 61 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 4799999999999999999999999999999999999998753 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|++++++||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.++++
T Consensus 62 ~~G~~~~~~ir~~~-----~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 62 MDGIATLKEIKALN-----PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CCHHHHHHHHHhhC-----CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999752 45899999999999999999999999999999999999999987764
No 97
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.36 E-value=8.3e-12 Score=150.10 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=108.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..||+|++|+.||.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlillD~~~p~ 60 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-----------------------IHPDVVLMDIRMPE 60 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999998853 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|+++++.||+.. +.+|||++|++...+...+++++|+++|+.||++.++|...|.+++.
T Consensus 61 ~~g~~ll~~i~~~~-----~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 61 MDGIKALKEMRSHE-----TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 99999999999742 45899999999999999999999999999999999999999987764
No 98
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.36 E-value=9.1e-12 Score=135.94 Aligned_cols=115 Identities=28% Similarity=0.456 Sum_probs=98.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCC-E-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGA-T-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~-~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++|||+||++..+..+..+|+..|. . +..+.++.++++.+.. ..||+||+|+.||
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~dlv~lDi~~~ 58 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-----------------------LKPDVVFLDIQMP 58 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 5899999999999999999998873 3 4568999999988753 3699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|||+++++.++.. ...+||++|++. +...++++.|+++||.||++.++|..++.++.+.
T Consensus 59 ~~~G~~~~~~l~~~------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 59 RISGLELVGMLDPE------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCCHHHHHHHhccc------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999998632 235789999875 4567899999999999999999999999988754
No 99
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.35 E-value=2.1e-11 Score=132.44 Aligned_cols=118 Identities=27% Similarity=0.449 Sum_probs=107.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||++||++..+..+..+|+..|+.+..+.++.+|+..+.. ..||+|++|+.||.+
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~~~~ 67 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-----------------------TPPDLILLDLMLPGT 67 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+. ..+|||+++++........++++|+++|+.||++.++|..+|..++++.
T Consensus 68 ~g~~~~~~l~~~------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 68 DGLTLCREIRRF------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred CHHHHHHHHHhc------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 999999999952 3589999999998888999999999999999999999999998887653
No 100
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.35 E-value=8.1e-12 Score=149.68 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=103.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC---
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK--- 1028 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~--- 1028 (1105)
||||||++..+..+...| .||.|..+.++.+|++.+.. ..||+||+|+.||.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-----------------------~~~dlvllD~~mp~~~~ 55 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-----------------------HEPAVVTLDLGLPPDAD 55 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCCcC
Confidence 689999999999999988 79999999999999999864 37999999999996
Q ss_pred --CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1029 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1029 --mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|++++++|++.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 56 ~~~~g~~~l~~i~~~~-----~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 56 GASEGLAALQQILAIA-----PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CCCCHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 99999999999742 46899999999999999999999999999999999999999977654
No 101
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.34 E-value=2.7e-11 Score=129.53 Aligned_cols=119 Identities=35% Similarity=0.509 Sum_probs=107.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~vild~~~~~~ 57 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-----------------------EMYALAVLDINMPGM 57 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 379999999999999999999999999999999999887753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++.||+.. +++|||++|++...+...+++++|+++|+.||++.++|..++..++++.
T Consensus 58 ~~~~~~~~i~~~~-----~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 58 DGLEVLQRLRKRG-----QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999752 3589999999999999999999999999999999999999998887654
No 102
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.33 E-value=1.1e-11 Score=149.13 Aligned_cols=115 Identities=27% Similarity=0.421 Sum_probs=105.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1031 (1105)
||||||++..+..+..+|+..|+.|..+.++.+|+..+.. ..||+|++|+.||+|+|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlVllD~~~p~~~g 57 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-----------------------GQPDLLITDVRMPGEDG 57 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCCCH
Confidence 6899999999999999999999999999999999998753 47999999999999999
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+++++.||+.. +.+|||++|++.......+++++|+++|+.||++.++|..+|.+++.
T Consensus 58 ~~ll~~l~~~~-----~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 58 LDLLPQIKKRH-----PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred HHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 99999999742 45899999999999999999999999999999999999999988754
No 103
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.30 E-value=2.3e-11 Score=131.19 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=95.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..++++|||+|..+..+..+|+..-..+..+.++.+|++.+ .+||+||||+.||+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~-------------------------~~~DvvllDi~~p~ 64 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI-------------------------SSGSIILLDMMEAD 64 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccC-------------------------CCCCEEEEECCCCC
Confidence 35799999999999999999984333456788999988864 14999999999999
Q ss_pred CCHHHHH-HHHHccccccCCCCcceEEEeccCCHHHHHHHHh--cCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEAT-IEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~-~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|++++ +.||+.. ++++||++|++... ...++. +|+++|+.|+.+.++|.++|+.+.++.
T Consensus 65 ~~G~~~~~~~i~~~~-----p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~ 128 (216)
T PRK10100 65 KKLIHYWQDTLSRKN-----NNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE 128 (216)
T ss_pred ccHHHHHHHHHHHhC-----CCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999997 5678642 45899999998763 334555 599999999999999999998877654
No 104
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.29 E-value=4.2e-11 Score=139.23 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=98.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++.++..+..+|+.. |+.+. .+.++.+|++.+.. ..||+|++|+.|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-----------------------~~~DlVllD~~m 59 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-----------------------LNPDVITLDVEM 59 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-----------------------hCCCEEEEeCCC
Confidence 368999999999999999999876 78877 89999999998753 469999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCC--HHHHHHHHhcCCCEEEEcCCCH---------HHHHHHHHHHhh
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTK 1094 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~~---------~~L~~~I~~l~~ 1094 (1105)
|.|||++++++||+.. . +|||++|+... .....+++++|+++||.||++. ++|..+++.+.+
T Consensus 60 p~~dgle~l~~i~~~~-----~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 60 PVMDGLDALEKIMRLR-----P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CCCChHHHHHHHHHhC-----C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999742 2 89999998643 4566789999999999999953 566666666543
No 105
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.29 E-value=3.1e-11 Score=135.85 Aligned_cols=116 Identities=24% Similarity=0.483 Sum_probs=97.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
+|||||||.+..|++++.+|...| ..|..+.||.+|++++.+ ..||+|.||++||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-----------------------~~PDVi~ld~emp 58 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-----------------------LKPDVITLDVEMP 58 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-----------------------cCCCEEEEecccc
Confidence 589999999999999999999988 567889999999999975 3799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCC--HHHHHHHHhcCCCEEEEcCCC---------HHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPID---------SERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~---------~~~L~~~I~~l~~ 1094 (1105)
.|||+|++++|-+. ..+|||++++-.. .+...+|++.|+-||+.||.. .++|.+.|+..-+
T Consensus 59 ~mdgl~~l~~im~~------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~ 130 (350)
T COG2201 59 VMDGLEALRKIMRL------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAAR 130 (350)
T ss_pred cccHHHHHHHHhcC------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHHHHHhh
Confidence 99999999999864 3489999987433 455668999999999999984 2344455555543
No 106
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.28 E-value=3.5e-11 Score=125.91 Aligned_cols=120 Identities=20% Similarity=0.372 Sum_probs=108.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~d~ii~d~~~~~ 59 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-----------------------LRFGCVVTDVRMPG 59 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-----------------------CCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999999999887742 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|+++++.||+.. +++|||++|+.........++++|+++|+.||++.+++..++..+++..
T Consensus 60 ~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 60 IDGIELLRRLKARG-----SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred CcHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999999642 4689999999999999999999999999999999999999998877653
No 107
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.28 E-value=1.6e-11 Score=107.33 Aligned_cols=67 Identities=45% Similarity=0.704 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQ-YSTVCQIKKSSYALLRLLNRILDLSKVESG 488 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~-~~~l~~I~~ss~~L~~LIndiLdlskie~g 488 (1105)
+|.+|++++||||||||++|.+++++|......++++ ++++..|..++.+|..+++++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4789999999999999999999999998745567777 899999999999999999999999999987
No 108
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=8.2e-11 Score=140.46 Aligned_cols=118 Identities=31% Similarity=0.463 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
+||++||++..+..+...|+..|+.+..+.++.++++.+.. ..||+|++|+.||.++
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~~~ 60 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-----------------------EQPDIILLDVMMPGMD 60 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-----------------------cCCCEEEEeCCCCCCC
Confidence 79999999999999999999899999999999999998853 4699999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+++++.||+... .+.+|||++|+........+++++|+++|+.||++.++|..++.++.+
T Consensus 61 g~~l~~~i~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 61 GFEVCRRLKSDPA---TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred HHHHHHHHHcCcc---cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 9999999997432 246899999999999999999999999999999999999999988754
No 109
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.24 E-value=6.5e-11 Score=126.85 Aligned_cols=108 Identities=11% Similarity=0.128 Sum_probs=90.7
Q ss_pred HHHHHHHHHh---cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE---EcCCCCCCCHHHHH
Q 001298 962 QIVACKILEK---VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL---MDCQMPKMDGYEAT 1035 (1105)
Q Consensus 962 ~~~l~~~L~~---~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl---mDi~MP~mdG~e~~ 1035 (1105)
|..+..+|+. .|+.|..+.++.++++.+.. .+||+++ +|+.||+|||++++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-----------------------~~pd~vl~dl~d~~mp~~~Gl~~~ 59 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-----------------------ISFSAVIFSLSAMRSERREGLSCL 59 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-----------------------CCCCEEEeeccccCCCCCCHHHHH
Confidence 5677888865 46777899999999998753 3689998 78899999999999
Q ss_pred HHHHccccccCCCCcceEEEeccCCHHHHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1036 IEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1036 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++||+.. +.+|||++|++..+....+++ ++|+++||.||.+.++|..+|+.++.+..
T Consensus 60 ~~l~~~~-----p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 60 TELAIKF-----PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred HHHHHHC-----CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 9999753 468999999988776566655 79999999999999999999999887643
No 110
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.24 E-value=3.7e-11 Score=141.62 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=84.4
Q ss_pred EEeCHHHHHHHHHHHHhhHhcccCC-C---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCc
Q 001298 533 VRGDPGRVFQIFSNLINNSIKFTSS-G---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 608 (1105)
Q Consensus 533 v~gD~~rL~QIL~NLL~NAIKfT~~-G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1105)
+.+|...|.|++.||++||++|+.. | .|.|.+.. .+.
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~---------------------------------------~g~ 62 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEK---------------------------------------IGK 62 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------CCC
Confidence 5679999999999999999999875 3 34443210 111
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCC--CCCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCceEE
Q 001298 609 LALCFEVDDTGCGIDQSKWETVFESFEQGDPST--TRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGTLM 678 (1105)
Q Consensus 609 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~--~~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~GT~f 678 (1105)
..+.|+|.|+|+||++++++++|++|++++... ....|+.|+||++|+.++++|+|+ ++|.|..+ |..|
T Consensus 63 ~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 63 DHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred ceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 235689999999999999999999998876532 223478999999999999999999 99999876 6655
No 111
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.24 E-value=3.3e-10 Score=108.18 Aligned_cols=122 Identities=23% Similarity=0.461 Sum_probs=107.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.++||++|+++.....+...|+..|+. +..+.++.+++..+.. ..||++++|..+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~di~l~d~~~~ 61 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGFGFVISDWNMP 61 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-----------------------cCCCEEEEcCCCC
Confidence 368999999999999999999999984 7789999999987742 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++|+++.+.+++... .+.+|+++++.........+++++|+++|+.||++.+++...+.+++++.
T Consensus 62 ~~~~~~~~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 62 NMDGLELLKTIRADGA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCCHHHHHHHHHhCCC---cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 9999999999997532 24589999999888888889999999999999999999999999988654
No 112
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=6e-11 Score=143.43 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=87.9
Q ss_pred hcCCcEEEEEeCCCCCc-eEEeCHHHHHHHHHHHHhhHhcccCCCc----EEEEeeccccCCCCCCccCCccccccchhh
Q 001298 515 SNHNVETVLDLSDNIPR-NVRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAF 589 (1105)
Q Consensus 515 ~~k~i~l~~~~~~~~p~-~v~gD~~rL~QIL~NLL~NAIKfT~~G~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (1105)
.++.+.+..-+..+.+. .+..|...|.++|.|||+||++|+..++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 34666666555544431 2234678899999999999999998654 4443311
Q ss_pred hhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCC----CCCCCCCccchHHHHHHHHHHcCCE
Q 001298 590 RTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNKMGGE 665 (1105)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s----~~~~~~GtGLGLaIvk~LVe~~gG~ 665 (1105)
....+.|.|.|+|+||++++++++|++|++++.. .++...|.||||++|...+. +||.
T Consensus 78 -----------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~Ggp 139 (795)
T PRK14868 78 -----------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKP 139 (795)
T ss_pred -----------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCc
Confidence 1224679999999999999999999999876431 23344567777777776663 7899
Q ss_pred EEEEEeCCC-c--eEEEEEEe
Q 001298 666 IKVVKKNSP-G--TLMQLYLL 683 (1105)
Q Consensus 666 I~v~S~~g~-G--T~f~~~lp 683 (1105)
|.|.|..+. + +.|.+.+.
T Consensus 140 I~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 140 AKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred EEEEeCCCCCCceeEEEEEEe
Confidence 999998753 3 33444443
No 113
>PRK13435 response regulator; Provisional
Probab=99.23 E-value=2.6e-10 Score=114.58 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=100.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.++|||+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dliivd~~~~ 61 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-----------------------RQPDVALVDVHLA 61 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-----------------------cCCCEEEEeeecC
Confidence 46899999999999999999999999987 78999999987753 3699999999998
Q ss_pred -CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
.++|+++.+.+++. ..+|||+++.... ...++.+|+++|+.||++.++|.+.|.++..+..
T Consensus 62 ~~~~~~~~~~~l~~~------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 62 DGPTGVEVARRLSAD------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred CCCcHHHHHHHHHhC------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 59999999999753 2589999997543 3568889999999999999999999998876543
No 114
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.19 E-value=4.2e-10 Score=118.41 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=105.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..+||++||++..+..+...|... ++.+ ..+.++.++++.+.. ..||+|++|+.|
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~~ 59 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-----------------------LEPDIVILDLGL 59 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCC
Confidence 468999999999999999999875 4664 478999999987753 469999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|.++|+++++.+|+.. +.+|+|++|+.........++++|+++|+.||++.++|..++..+..+.
T Consensus 60 ~~~~~~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 60 PGMNGLDVIPQLHQRW-----PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred CCCCHHHHHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999742 3589999999999999999999999999999999999999998877553
No 115
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.19 E-value=1.3e-10 Score=146.32 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=103.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++.++..+..+|...|+.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-----------------------~~~Dlvl~d~~lp~~ 64 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-----------------------GEIDCVVADHEPDGF 64 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-----------------------cCCCEEEEeccCCCC
Confidence 689999999999999999999999999999999999998753 469999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHH--HHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSE--RMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~--~L~~~I~~l~~ 1094 (1105)
+|++++++||... +.+|||++|++...+...+++++|+++|+.||.+.. .+..++...+.
T Consensus 65 ~g~~~l~~l~~~~-----~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 65 DGLALLEAVRQTT-----AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 9999999999642 468999999999999999999999999999997643 66666665554
No 116
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.18 E-value=4.2e-10 Score=119.52 Aligned_cols=119 Identities=25% Similarity=0.398 Sum_probs=104.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+|||+||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvl~d~~l~ 63 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-----------------------LDPDLILLDLNMP 63 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCC
Confidence 58999999999999999999765 5554 468999999998753 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++|+++++.+|+.. +++|+|++++.........++++|+++|+.||++.++|...|..+.++.
T Consensus 64 ~~~~~~~~~~l~~~~-----~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 64 GMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred CCcHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999742 3579999999999999999999999999999999999999999987653
No 117
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.18 E-value=4.4e-10 Score=119.16 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=103.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh-cCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~ 63 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-----------------------LDPDVILLDLNMK 63 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCC
Confidence 5899999999999999999975 577765 68999999987753 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
.++|+++++.+++.. +++|++++|.+........++++|+++|+.||++.++|..++..+..+
T Consensus 64 ~~~~~~~~~~l~~~~-----~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 64 GMSGLDTLNALRRDG-----VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CCcHHHHHHHHHHhC-----CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999999999742 357999999998888899999999999999999999999999876543
No 118
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.18 E-value=1.1e-10 Score=141.41 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=88.4
Q ss_pred EeCHHHHH---HHHHHHHhhHhcccCCC----cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccC
Q 001298 534 RGDPGRVF---QIFSNLINNSIKFTSSG----HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFRED 606 (1105)
Q Consensus 534 ~gD~~rL~---QIL~NLL~NAIKfT~~G----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1105)
.|++..++ +++.||++||++|+..+ .|.|.+.. .
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~---------------------------------------~ 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEK---------------------------------------L 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEE---------------------------------------C
Confidence 45555554 99999999999998753 45544311 1
Q ss_pred CceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC--CCCCCccchHHHHHHHHHHc-CCEEEEEEeCCCceEEEEEEe
Q 001298 607 NKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT--RKHGGTGLGLSIVRTLVNKM-GGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 607 ~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~--~~~~GtGLGLaIvk~LVe~~-gG~I~v~S~~g~GT~f~~~lp 683 (1105)
+...+.|+|.|+|+|||++.++++|++|+.++.-.. +..|+.|+||+++..+.+.+ ||.+.+.|..+.|++|++.+|
T Consensus 69 g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~ 148 (659)
T PRK14867 69 GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIK 148 (659)
T ss_pred CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEE
Confidence 123467999999999999999999999987654211 34578999999999999886 566999999999999999998
Q ss_pred cCC
Q 001298 684 LGA 686 (1105)
Q Consensus 684 l~~ 686 (1105)
+..
T Consensus 149 i~i 151 (659)
T PRK14867 149 MSV 151 (659)
T ss_pred EEe
Confidence 854
No 119
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.18 E-value=1.9e-10 Score=106.30 Aligned_cols=101 Identities=43% Similarity=0.631 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhHhcccC--CCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEe
Q 001298 540 VFQIFSNLINNSIKFTS--SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 617 (1105)
Q Consensus 540 L~QIL~NLL~NAIKfT~--~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~D 617 (1105)
|.+++.+|++||++|.. .+.+.+.... ....+.|.|.|
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~----------------------------------------~~~~~~v~i~d 40 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVER----------------------------------------DGDHLEIRVED 40 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEe----------------------------------------cCCEEEEEEEe
Confidence 46899999999999987 4566655421 11247899999
Q ss_pred CCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001298 618 TGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682 (1105)
Q Consensus 618 tG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~l 682 (1105)
+|.|+++..+++.|.+|... ......++.|+||++|+++++.|||++++.+..+.|++|++.+
T Consensus 41 ~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 41 NGPGIPEEDLERIFERFSDG--SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CCCCCCHHHHHHHhhhhhcC--CCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 99999999999999987211 1222345899999999999999999999999888899988753
No 120
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.16 E-value=3.1e-10 Score=121.88 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=97.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCC---EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC--
Q 001298 951 RILLAEDTPLIQIVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ-- 1025 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~---~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~-- 1025 (1105)
.||||||++..+..++.+|+..++ .+..+.++.++++.+.. .+||+||||+.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~-----------------------~~pDlvLlDl~~~ 58 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS-----------------------LRPSVVFINEDCF 58 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc-----------------------cCCCEEEEeCccc
Confidence 589999999999999999987653 45678999999997753 36899999966
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCE-EEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA-YLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~-yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
||.++|.+++++|++.. +.+|||++|++.+.... .++.+|++. |+.|+.+.++|..+|+.+..+..
T Consensus 59 l~~~~g~~~i~~i~~~~-----p~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~ 125 (207)
T PRK15411 59 IHDASNSQRIKQIINQH-----PNTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKKET 125 (207)
T ss_pred CCCCChHHHHHHHHHHC-----CCCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcCCc
Confidence 89899999999999753 45899999998776554 355666655 89999999999999999886553
No 121
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-10 Score=116.64 Aligned_cols=116 Identities=33% Similarity=0.453 Sum_probs=96.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.++||++||++.++..+...|...||. |.++.++.++.+.... .+||+||||+.||
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~-----------------------~~pDvVildie~p 61 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER-----------------------LQPDVVILDIEMP 61 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh-----------------------cCCCEEEEecCCC
Confidence 479999999999999999999999996 4578899998887754 5899999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
.-|-.|... +.+ . ....|||++|++.+++..+++.++|+.+||+||++...|...+.-..
T Consensus 62 ~rd~~e~~~-~~~--~---~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 62 RRDIIEALL-LAS--E---NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CccHHHHHH-Hhh--c---CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHH
Confidence 999444332 222 1 13479999999999999999999999999999999999887775443
No 122
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.12 E-value=1.6e-09 Score=134.15 Aligned_cols=141 Identities=23% Similarity=0.414 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHhc--CCcEEEEEeCCCCCceEEeCHHHHHHH---HHHHHhhHhccc-------------CCCcEE
Q 001298 500 QKELEELVDMFSVQCSN--HNVETVLDLSDNIPRNVRGDPGRVFQI---FSNLINNSIKFT-------------SSGHII 561 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~--k~i~l~~~~~~~~p~~v~gD~~rL~QI---L~NLL~NAIKfT-------------~~G~i~ 561 (1105)
..++...-.+.+..+.+ |.++|.+. .. ....|+.-|.++ |.+||.||+.|. +.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ie--G~---~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIE--GE---DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEe--cC---CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 34555555555555554 55555544 33 246799888887 899999999994 125566
Q ss_pred EEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHh-------------
Q 001298 562 IRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWE------------- 628 (1105)
Q Consensus 562 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~------------- 628 (1105)
+++.- .+ ..+.|+|.|.|.||+.+.+.
T Consensus 468 L~A~~--------------------------------------~g--n~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 468 LSAYH--------------------------------------EG--NNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred EEEEc--------------------------------------CC--CeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 55421 12 24779999999999887643
Q ss_pred -----------hhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 629 -----------TVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 629 -----------~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
-||.|-|..... -..-+|-|.||=+||+-|+.+||+|.|+|++|+||+|++.||+..
T Consensus 508 a~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 508 AETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred hccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 388886644322 234579999999999999999999999999999999999999853
No 123
>PRK09191 two-component response regulator; Provisional
Probab=99.09 E-value=1.6e-09 Score=119.95 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=99.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.+|||+||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-----------------------~~~dlvi~d~~~~~ 194 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-----------------------TRPGLILADIQLAD 194 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-----------------------cCCCEEEEecCCCC
Confidence 5799999999999999999999999887 78999999998753 46999999999995
Q ss_pred -CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 -mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|+++++.+++.. ++|||++|+...... .+...|+++|+.||++.++|...|.++.....
T Consensus 195 ~~~g~e~l~~l~~~~------~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 256 (261)
T PRK09191 195 GSSGIDAVNDILKTF------DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQE 256 (261)
T ss_pred CCCHHHHHHHHHHhC------CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhccc
Confidence 89999999998641 589999999765443 34456789999999999999999998876543
No 124
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.07 E-value=8.5e-10 Score=110.32 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=75.1
Q ss_pred eCHHHHHHHHHHHHhhHhcccC----CCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTS----SGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~----~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1105)
.|...+.+++.|+++||++|+. .|.|.+.+.. ....
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~----------------------------------------~~~~ 74 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATI----------------------------------------EDHE 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE----------------------------------------eCCE
Confidence 4667899999999999999852 3456654321 1124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001298 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681 (1105)
Q Consensus 611 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~ 681 (1105)
+.|+|.|+|+||+ ..+++|++|+..+. ..+|+|+||++++++ .+++.+++.+++||+|+++
T Consensus 75 ~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v~i~ 135 (137)
T TIGR01925 75 VYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKIIMK 135 (137)
T ss_pred EEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEEEEE
Confidence 7899999999998 37789999996543 235899999998874 5799999999999999875
No 125
>PRK10693 response regulator of RpoS; Provisional
Probab=99.04 E-value=1e-09 Score=124.93 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=79.1
Q ss_pred EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEec
Q 001298 978 VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1057 (1105)
Q Consensus 978 ~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1057 (1105)
.+.+|.+|++.+.. ..||+|++|+.||+|+|+|++++||+.. ..+|||++|+
T Consensus 2 ~a~~g~~al~~l~~-----------------------~~pDlVL~D~~mp~~~Gle~~~~ir~~~-----~~ipiI~lt~ 53 (303)
T PRK10693 2 LAANGVDALELLGG-----------------------FTPDLIICDLAMPRMNGIEFVEHLRNRG-----DQTPVLVISA 53 (303)
T ss_pred EeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CCCcEEEEEC
Confidence 47899999998853 4699999999999999999999999752 3589999999
Q ss_pred cCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhh
Q 001298 1058 HAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTK 1094 (1105)
Q Consensus 1058 ~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~ 1094 (1105)
....+...+++++|++||+.||+ +.++|..+|.+.++
T Consensus 54 ~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 54 TENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999 58999998887664
No 126
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.01 E-value=2.2e-07 Score=108.58 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccc
Q 001298 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDR 582 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~ 582 (1105)
.+.+..........-++.+.....+..+..-..-+.-+.+|+.--|+||+||+..-.+.|.....
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~--------------- 307 (365)
T COG4585 243 VEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT--------------- 307 (365)
T ss_pred HHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc---------------
Confidence 33333333334444556665554421111113467889999999999999999988888765321
Q ss_pred cccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHc
Q 001298 583 KKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662 (1105)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~ 662 (1105)
...++++|.|+|+|.+++.. +.|.||.=-|+=|+.+
T Consensus 308 -------------------------~~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~~l 343 (365)
T COG4585 308 -------------------------DDELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVEAL 343 (365)
T ss_pred -------------------------CCEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHHHc
Confidence 12388999999999876431 1589999999999999
Q ss_pred CCEEEEEEeCCCceEEEEEEec
Q 001298 663 GGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 663 gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
||++.+.|.+|+||++++.+|+
T Consensus 344 gG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 344 GGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred CCEEEEEecCCCceEEEEecCC
Confidence 9999999999999999999985
No 127
>PRK03660 anti-sigma F factor; Provisional
Probab=98.99 E-value=3.6e-09 Score=106.94 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=78.4
Q ss_pred eCHHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1105)
.|...+.+++.|++.||++|... +.+.+.... . ...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~--------------------------------------~--~~~ 74 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI--------------------------------------E--EEE 74 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE--------------------------------------C--CCE
Confidence 36678999999999999998632 445554321 1 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 611 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+.|+|.|+|.||++ ..++|++|++.... ..++|+||+|+++ +.+++.+++.++.||+|+++.++..
T Consensus 75 l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 75 LEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred EEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 77999999999986 66899999864431 2478999999875 4568999999999999999998864
No 128
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.94 E-value=1.3e-08 Score=92.85 Aligned_cols=112 Identities=41% Similarity=0.628 Sum_probs=99.3
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHH
Q 001298 953 LLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032 (1105)
Q Consensus 953 LIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~ 1032 (1105)
|++|+++..+..+...|...|+.+..+.++.++++.+.. ..||++++|..++.++|+
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ii~~~~~~~~~~~ 57 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-----------------------EKPDLILLDIMMPGMDGL 57 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-----------------------CCCCEEEEecCCCCCchH
Confidence 578999999999999999999999999999999987753 479999999999999999
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
+..+.+++. ...+|+++++.........++++.|+++|+.||++.++|...+..+
T Consensus 58 ~~~~~l~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 58 ELLRRIRKR-----GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred HHHHHHHHh-----CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 999999875 1358999999887777888999999999999999999999888654
No 129
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.92 E-value=5.4e-07 Score=99.42 Aligned_cols=194 Identities=18% Similarity=0.314 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
+..+++...-+=.||-.-+++|...+.++++ ...+++.++....|+.-+.++-.-+..+|.- +.-. ...+.-+
T Consensus 300 EsiRk~vARELHDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~r--LRP~----~LDdL~l 372 (497)
T COG3851 300 ESIRKDVARELHDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLGR--LRPR----QLDDLTL 372 (497)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHHh--cCCc----ccccccH
Confidence 3445666666777888899999999998876 3345555666666777777777666666642 2211 2235667
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
.+.+..+++.+ ...++||...++...+....=..-+.-|.+++..+++|-+||.+...|.+..+..
T Consensus 373 ~qai~~l~~Em--~~~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~------------ 438 (497)
T COG3851 373 EQAIRSLLREM--ELEERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQ------------ 438 (497)
T ss_pred HHHHHHHHHHh--hhhhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeC------------
Confidence 88888888765 4567888777765433211001123357889999999999999988888775421
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
...+.++|+|+|.|+|+.. +-+|.||.=-++=|
T Consensus 439 ----------------------------~e~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERV 471 (497)
T COG3851 439 ----------------------------DERLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERV 471 (497)
T ss_pred ----------------------------CcEEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHH
Confidence 1236789999999998632 24689999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEe
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lp 683 (1105)
.+.||++.++| -.||++.+++|
T Consensus 472 saLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 472 SALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred HHhCCceEEEe--ccCcEEEEecc
Confidence 99999999998 57999999987
No 130
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.92 E-value=2e-08 Score=127.30 Aligned_cols=390 Identities=19% Similarity=0.239 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001298 411 DARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKM 490 (1105)
Q Consensus 411 ~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~ 490 (1105)
.+++++......+..+...++|..|+|.+.+++....+.....+...+.-.++...+.+..+..+++.-.+.++...|.-
T Consensus 374 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~ 453 (786)
T KOG0519|consen 374 RAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTG 453 (786)
T ss_pred hhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCc
Confidence 34455555666677788888899999999999999866655555566666677778888889999999999999888777
Q ss_pred cccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhc--ccCCCcE-EEEeecc
Q 001298 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIK--FTSSGHI-IIRGWCE 567 (1105)
Q Consensus 491 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIK--fT~~G~i-~v~~~~~ 567 (1105)
..+...+.+..++.+.+.........+...+...+..+.+..+.+|+.++.|++.+..+++.+ ++..|.- +.....+
T Consensus 454 ~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 454 LGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred ccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 677778999999999999998888888899988888888888999999999999999999999 8887742 3332222
Q ss_pred ccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001298 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647 (1105)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 647 (1105)
....+-.... ..+..+ +... .......+.+.+++++.|+...+....|..|-+....+.+...+
T Consensus 534 ~~~~~vd~~~--~~~~~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 597 (786)
T KOG0519|consen 534 LLGISVDVSL--SLSLAF---WFLD-----------LSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSG 597 (786)
T ss_pred ccCccccccc--cchhhh---hhcc-----------cccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccc
Confidence 1111100000 000000 0000 01112357899999999999999998888887776655554578
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCce------EEEEEEecC-------CCCccc----cccCCCCCCcEEEEeecCh
Q 001298 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGT------LMQLYLLLG-------ASSESK----QIYDADFPNTVVVLATVGS 710 (1105)
Q Consensus 648 tGLGLaIvk~LVe~~gG~I~v~S~~g~GT------~f~~~lpl~-------~~~~~~----~~~~~~~~~~~v~~~~~~~ 710 (1105)
.+++++.|++..+.++|.+++.-.. .|- ++....... .....+ ........+..+++++.+.
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~ 676 (786)
T KOG0519|consen 598 SGLSLALCPENSQLMEGNIGLVPSS-DGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNP 676 (786)
T ss_pred cccccccchhhHHhhhccccccccc-ccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEeccc
Confidence 8999999999999999999886221 111 000000000 000000 0112223477799999999
Q ss_pred hhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccc
Q 001298 711 MERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLD 790 (1105)
Q Consensus 711 ~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d 790 (1105)
..+......+++.|+.+.++....+.... +- ..+++.++.+|+.++.
T Consensus 677 vn~~Va~~~l~~~g~~~~~~~sg~e~l~~---~~------------------------------~~~~y~~ifmD~qMP~ 723 (786)
T KOG0519|consen 677 VNRKVATGMLKKLGAEVTEVNSGQEALDK---LK------------------------------PPHSYDVIFMDLQMPE 723 (786)
T ss_pred chHHHHHHHHHHhCCeeEeecCcHHHHHh---cC------------------------------CCCcccEEEEEcCCcc
Confidence 99999999999999988877632222111 10 2357889999999999
Q ss_pred cChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHH
Q 001298 791 LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853 (1105)
Q Consensus 791 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 853 (1105)
+++.......+. ........+..+.++.....++..+.|.+.+++||+...++...+...
T Consensus 724 mDG~e~~~~irk---~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 724 MDGYEATREIRK---KERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred cchHHHHHHHHH---hhcCCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 999544433332 222233334555556677788889999999999999999888877553
No 131
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.82 E-value=1.7e-06 Score=104.18 Aligned_cols=185 Identities=23% Similarity=0.281 Sum_probs=112.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~l 502 (1105)
|..=....-|.|.+=|++|.++++.- + ++ ...+.+.. |..+.. .++++.+ ...++..-
T Consensus 259 ~~lqsqi~pHfL~NtL~~I~~~~~~~--~----~~--~~~~~v~~----l~~llR--~~l~~~~--------~~~~l~~E 316 (456)
T COG2972 259 RALQSQINPHFLYNTLETIRMLAEED--D----PE--EAAKVVKA----LSKLLR--YSLSNLD--------NIVTLEIE 316 (456)
T ss_pred HHHHhhcchHHHHhHHHHHHHHHHhc--C----HH--HHHHHHHH----HHHHHH--HHhhCCC--------CeeeHHHH
Confidence 33334567899999999999998841 1 11 11111222 222222 2222221 12344444
Q ss_pred HHHHHHHHHHHHhcCCcEEEE--EeCCCCCceEEeCHHHHHHHHHHHHhhHhccc-----CCCcEEEEeeccccCCCCCC
Q 001298 503 LEELVDMFSVQCSNHNVETVL--DLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWCENLDTSKNT 575 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~--~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-----~~G~i~v~~~~~~~~~~~~~ 575 (1105)
+.-+...+..+-.+-+..+.+ ++++.... ..||. -+|..|++|||+|. +.|.|.+.+..
T Consensus 317 ~~~~~kyl~iq~~r~~~~le~~~~i~~~~~~--l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~--------- 382 (456)
T COG2972 317 LLLIEKYLEIQKLRIGDRLEVPLPIDEELEP--LIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKK--------- 382 (456)
T ss_pred HHHHHHHHHHHHhccCcceEEEeccCccccc--ccCch---HHHhHHHHHHHHHhcccCCCCCEEEEEEEE---------
Confidence 444444433333333333333 33332211 24554 56778999999997 23456554321
Q ss_pred ccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC-ccchHHH
Q 001298 576 AEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG-TGLGLSI 654 (1105)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G-tGLGLaI 654 (1105)
....+.++|.|+|+||+++..+.+.+. .++ .|+||.=
T Consensus 383 -------------------------------~~~~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~N 420 (456)
T COG2972 383 -------------------------------QDDVIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSN 420 (456)
T ss_pred -------------------------------cCCEEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHH
Confidence 134588999999999999988876542 112 5999999
Q ss_pred HHHHHHHcCCE--EEEEEeCCCceEEEEEEecC
Q 001298 655 VRTLVNKMGGE--IKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 655 vk~LVe~~gG~--I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+++.++.+-|. +.++|++++||..++.+|..
T Consensus 421 v~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 421 VKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred HHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 99999999998 69999999999999998864
No 132
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.76 E-value=1.7e-06 Score=100.82 Aligned_cols=185 Identities=24% Similarity=0.437 Sum_probs=129.9
Q ss_pred HHhhhhhhhHHHHHHHHH----HHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHH
Q 001298 428 ANMSHELRTPMAAIIGLL----EILKSD--DQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQK 501 (1105)
Q Consensus 428 a~~SHELRTPL~~I~G~~----elL~~~--~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ 501 (1105)
+.|+-||.--|+-.+.++ .+|+.. ....++.++.+..|+.....--+-+.++|.--|+ ...+-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 345556666555555554 344322 1344566677777888777777788888865443 334567778
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeC---HHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccC
Q 001298 502 ELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD---PGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEF 578 (1105)
Q Consensus 502 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD---~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~ 578 (1105)
-++++++.|.. +-++.+.++.. +|.. -.| ...+-||+.-=++||+||+....|.|.+...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~-~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~----------- 509 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPR-ALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQN----------- 509 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCC-CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec-----------
Confidence 88888887754 45666666543 2221 123 3467789999999999999988888765321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001298 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
+ ..+.+.|+|+|+|||+.. . .+| --||.|-+.=
T Consensus 510 ---------------------------~--g~~~~~VeDnG~Gi~~~~-----------e------~~g-HyGL~IM~ER 542 (574)
T COG3850 510 ---------------------------D--GQVTLTVEDNGVGIDEAA-----------E------PSG-HYGLNIMRER 542 (574)
T ss_pred ---------------------------C--CeEEEEEeeCCcCCCCcc-----------C------CCC-CcchHHHHHH
Confidence 1 347799999999998752 1 123 5689999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEe
Q 001298 659 VNKMGGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 659 Ve~~gG~I~v~S~~g~GT~f~~~lp 683 (1105)
++..||++++++.+|+||.+.++|+
T Consensus 543 A~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 543 AQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred HHHhcCeEEEeecCCCCeEEEEEec
Confidence 9999999999999999999999986
No 133
>PRK15029 arginine decarboxylase; Provisional
Probab=98.76 E-value=4.5e-08 Score=121.89 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=86.4
Q ss_pred CEEEEEeCCHH--------HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 950 LRILLAEDTPL--------IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 950 ~~ILIvdD~~~--------~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
++||||||+.. .++.++..|+..||+|..+.|+.+|++.+.. ...||+||
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~----------------------~~~~DlVL 58 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------cCCCcEEE
Confidence 37999999995 6999999999999999999999999999853 13799999
Q ss_pred EcCCCCCCCHH----HHHHHHHccccccCCCCcceEEEeccCC--HHHHHHHHhcCCCEEEEcCCCHHHH
Q 001298 1022 MDCQMPKMDGY----EATIEIRKSESEHGARNIPIVALTAHAM--NADEKKCLGVGMNAYLTKPIDSERM 1085 (1105)
Q Consensus 1022 mDi~MP~mdG~----e~~~~IR~~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KPi~~~~L 1085 (1105)
+|++||+|+|+ +++++||+.. ..+|||++|+... +..-...++ -+++|+-+--+-.+.
T Consensus 59 LD~~LPd~dG~~~~~ell~~IR~~~-----~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred EECCCCCCccchhHHHHHHHHHhhC-----CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 99999999998 8999999631 3699999999986 222222222 267888887665554
No 134
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-06 Score=93.36 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=128.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccCCccccceeecH
Q 001298 422 YKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALL--RLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 422 ~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~--~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.|..++.-+.|-+++=|..|..++.+-..... ++ -.+. ......|+. .++.++|--+ .....+.
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~-~~-~~~~---~~~~~~Ri~sla~~He~L~~s---------~~~~~~~ 83 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFE-DE-VLEA---LRESQNRIQSLALIHELLYKS---------GDDTWDF 83 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcC-CH-HHHH---HHHHHHHHHHHHHHHHHHhcC---------CcceEcH
Confidence 46678899999999999999999886543321 21 1122 223333332 2344444322 2346788
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeC-HHHHHHHHHHHHhhHhccc----CCCcEEEEeeccccCCCCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGD-PGRVFQIFSNLINNSIKFT----SSGHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD-~~rL~QIL~NLL~NAIKfT----~~G~i~v~~~~~~~~~~~~ 574 (1105)
..+++.+...+.+....+++.+..+..+++ .+..| ..-|--|+.-|+.||+||. +.|.|.|.....
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~------- 154 (221)
T COG3920 84 ASYLELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSRE------- 154 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-------
Confidence 888888887776665566777777665532 22222 3456789999999999996 256776653221
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
.++. ...+.|.|+|.|+|.+. + . ...|+|+.+
T Consensus 155 ------------------------------~~~~-~~~l~v~deg~G~~~~~------------~----~-~~~g~G~~L 186 (221)
T COG3920 155 ------------------------------GDGG-RFLLTVWDEGGGPPVEA------------P----L-SRGGFGLQL 186 (221)
T ss_pred ------------------------------CCCC-eEEEEEEECCCCCCCCC------------C----C-CCCCcHHHH
Confidence 0111 34578999999998752 0 0 245999999
Q ss_pred HHHHH-HHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 655 VRTLV-NKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 655 vk~LV-e~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
++.+| ++.||.+...+.. ||.|++.+|...
T Consensus 187 v~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 187 VERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred HHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 99999 9999999987654 999999999753
No 135
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=3.7e-08 Score=108.39 Aligned_cols=115 Identities=33% Similarity=0.524 Sum_probs=96.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++|+++||++..|..+..++... +++ +..+.++.++++.++. ..+|++|+|+.||
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~fldI~~~ 58 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-----------------------LRPDLVFLDIAMP 58 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-----------------------cCCCeEEEeeccC
Confidence 47999999999999999999842 222 3368999999999864 3799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
.|+|+|+.++||... +..+||++|++..- ...+++..+-|||.||++.+.|...+.++.+
T Consensus 59 ~~~G~ela~~i~~~~-----~~~~Ivfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 59 DINGIELAARIRKGD-----PRPAIVFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred ccchHHHHHHhcccC-----CCCeEEEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 999999999999862 34789999998654 4567788999999999999999999986543
No 136
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.70 E-value=2.4e-05 Score=85.81 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHHHHHHHHHHH
Q 001298 435 RTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQC 514 (1105)
Q Consensus 435 RTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a 514 (1105)
..-|-+.+-.+|++...-..++. -....|.+++.+|..-|+++--+|- .--+--..+.-|..-++-+++.|+
T Consensus 263 sQ~LVs~k~~lela~~ql~~p~~--~a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL~aALe~L~~~f~--- 334 (459)
T COG4564 263 SQNLVSVKCALELAARQLNPPKG--GAHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGLTAALEALLEDFK--- 334 (459)
T ss_pred HHHHHHHHHHHHHHhccCCCCCC--CCchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhHHHHHHHHHHHhh---
Confidence 34456677778877544322211 1124577888888888888766553 111111223445566666666665
Q ss_pred hcCCcEEEEEeCCCCCceEE-eCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhh
Q 001298 515 SNHNVETVLDLSDNIPRNVR-GDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKL 593 (1105)
Q Consensus 515 ~~k~i~l~~~~~~~~p~~v~-gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1105)
++.|+++.++.+.. |..+. .-...|.+|..--+.|-=+|+..-.|.|...
T Consensus 335 ~~tg~~itle~~~~-p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~---------------------------- 385 (459)
T COG4564 335 ERTGIEITLEFDTQ-PGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ---------------------------- 385 (459)
T ss_pred hccCeEEEEEecCC-cccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec----------------------------
Confidence 66788888876432 32222 2346788999999999999985555655431
Q ss_pred hhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001298 594 KQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673 (1105)
Q Consensus 594 ~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g 673 (1105)
.....+.+.|+|+|+|++-+... ..-.||||-=.++=+...||++.|+|.+.
T Consensus 386 ------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrERma~~GG~~~v~s~p~ 437 (459)
T COG4564 386 ------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRERMAHFGGELEVESSPQ 437 (459)
T ss_pred ------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHHHHHHhCceEEEEecCC
Confidence 11234789999999998765432 11269999999999999999999999876
Q ss_pred CceEEEEEEecCC
Q 001298 674 PGTLMQLYLLLGA 686 (1105)
Q Consensus 674 ~GT~f~~~lpl~~ 686 (1105)
||..++.||+..
T Consensus 438 -GTel~v~Lp~~~ 449 (459)
T COG4564 438 -GTELTVLLPLDA 449 (459)
T ss_pred -CcEEEEEecchh
Confidence 999999998753
No 137
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.62 E-value=2.7e-07 Score=95.13 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1105)
+...+..++..++.||++|... |.|.|.+... ...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~----------------------------------------~~~l 78 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY----------------------------------------EDRL 78 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE----------------------------------------CCEE
Confidence 5567888999999999999853 4455543211 1248
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
.|.|.|+|+||+++.++..|.||+..++.. ...+.|+||.++++|++. +.+.+ +.|++|++.-.+.
T Consensus 79 ~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~ 144 (161)
T PRK04069 79 EIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYIN 144 (161)
T ss_pred EEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcC
Confidence 899999999999999999999988654432 223679999999999986 66665 4688888876654
No 138
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.44 E-value=2.9e-05 Score=89.34 Aligned_cols=130 Identities=28% Similarity=0.422 Sum_probs=92.9
Q ss_pred ceeecHHHHHHHHHHHHHHHHhcC--CcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhccc-----CCCcEEEEeec
Q 001298 494 NTEFDLQKELEELVDMFSVQCSNH--NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-----SSGHIIIRGWC 566 (1105)
Q Consensus 494 ~~~~dL~~ll~~v~~~~~~~a~~k--~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-----~~G~i~v~~~~ 566 (1105)
.+.+.|.+.++++-..++..-.+- .+++.+++++.+.. + .=|.. ++.=|+.|||||. +.|.|.|.+.+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~-~iP~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-V-QIPSF---ILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-c-cCchh---hhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 346889999999887765543332 34555555544311 1 11222 4566899999995 24677776543
Q ss_pred cccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCC
Q 001298 567 ENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHG 646 (1105)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~ 646 (1105)
+ + ..++++|+|+|-||+++ ...
T Consensus 489 ~--------------------------------------d--~~l~i~VeDng~li~p~------------------~~~ 510 (557)
T COG3275 489 E--------------------------------------D--ADLRIEVEDNGGLIQPD------------------EED 510 (557)
T ss_pred e--------------------------------------C--CeEEEEEecCCCCcCCC------------------CCC
Confidence 2 1 12789999999999886 134
Q ss_pred CccchHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEecCC
Q 001298 647 GTGLGLSIVRTLVNKMGG---EIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 647 GtGLGLaIvk~LVe~~gG---~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|+|+||+.+++=++.+=| -+.+++.+..||++.|.+|...
T Consensus 511 g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 511 GTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred CCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 899999999999988888 7899999999999999999854
No 139
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.42 E-value=9.9e-07 Score=74.96 Aligned_cols=64 Identities=52% Similarity=0.786 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVES 487 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~ 487 (1105)
+.+|++.++|||||||++|.++++.+.. ...+++....+..+..++.++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLED-TELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999999875 334555577888899999999999999999998765
No 140
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.40 E-value=1.4e-05 Score=89.35 Aligned_cols=202 Identities=20% Similarity=0.323 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc------ccceeecHHHHHHHHHHHHH
Q 001298 440 AIIGLLEILKSDDQ-L-TNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME------LENTEFDLQKELEELVDMFS 511 (1105)
Q Consensus 440 ~I~G~~elL~~~~~-l-~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~------l~~~~~dL~~ll~~v~~~~~ 511 (1105)
-+.|..|.=..... . ....+.+++....+=-.+.-|+|+=+-+-. +|+-. .-...+++.++|+++.+..+
T Consensus 153 lA~Gl~E~~~~~~dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar 230 (414)
T KOG0787|consen 153 LAQGLIEYREKDGDPVTEKNIQYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENAR 230 (414)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHH
Confidence 34566664322221 1 122334555543333333335565444322 33322 11346899999999999888
Q ss_pred HHHhcCCc---EEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-----Cc----EEEEeeccccCCCCCCccCC
Q 001298 512 VQCSNHNV---ETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-----GH----IIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 512 ~~a~~k~i---~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-----G~----i~v~~~~~~~~~~~~~~~~~ 579 (1105)
..|..+=+ +++++.+...... ..=|..|.-++.-|+.||+++|=+ |. |.|.+.
T Consensus 231 ~lCd~yy~~sPel~i~~~~a~~~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~-------------- 295 (414)
T KOG0787|consen 231 FLCDQYYLNSPELIIEGHNALSFT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVA-------------- 295 (414)
T ss_pred HHHHHhccCCCeeEecCcccccCc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEe--------------
Confidence 77776532 3444433333221 235889999999999999998732 22 333221
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCC------CCCCCCCccchHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPS------TTRKHGGTGLGLS 653 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s------~~~~~~GtGLGLa 653 (1105)
.++.-+.|.|.|.|=||+.++++++|.=-|...+. .+..-.|.|-||.
T Consensus 296 --------------------------~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 296 --------------------------KGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLP 349 (414)
T ss_pred --------------------------cCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCc
Confidence 11223668899999999999999999865544321 1233469999999
Q ss_pred HHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 654 IVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 654 Ivk~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
|||...+..||++.+.|-+|-||-..+++..
T Consensus 350 isrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 350 ISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred HHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 9999999999999999999999998888754
No 141
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=98.37 E-value=6.4e-05 Score=93.20 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=59.2
Q ss_pred cceeeee--eecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHH-hhcceEEEEECCcceEEEecCC
Q 001298 202 VASWHVA--VSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELV-EVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 202 ~~~w~~~--~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~-~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
...|+.. +...++.++++.+.||++ +|+++||+|++..+..+.++++... .+..|.+|+.|.+|.+++++..
T Consensus 220 ~~~~~~~~~~d~~tg~~vit~s~pv~~----~g~~~GVv~~di~l~~l~~~l~~~~~~~~~g~~~Lvd~~G~iia~~~~ 294 (570)
T PRK15426 220 GVRWFTSQPDDASNTEPQVTASVPVDA----GNYWYGVLAMDIPVRSLQQFLRNAIDKDLDGEYQLYDSHLRLLTSSAP 294 (570)
T ss_pred CeeEecCCcccccCCCeEEEEEEEEcc----CCeEEEEEEEEecHHHHHHHHHHhhccCCCcEEEEEcCCCcEEEecCc
Confidence 4458755 344557889999999986 5789999999999999999998775 5778999999999999987643
No 142
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.37 E-value=2.6e-06 Score=87.63 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001298 537 PGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612 (1105)
Q Consensus 537 ~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 612 (1105)
...+..++..++.||++|+.. |.|.|..+.. ...+.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~----------------------------------------~~~l~ 79 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY----------------------------------------EDRLE 79 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe----------------------------------------CCEEE
Confidence 345888999999999999743 4566543211 12478
Q ss_pred EEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 613 FEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+.|.|+|+|++++.++..|.+++..++.. ...+.|+||.|+++|++ ++.+.+ ++|+++++...+.
T Consensus 80 i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~ 144 (159)
T TIGR01924 80 IIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLN 144 (159)
T ss_pred EEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEc
Confidence 99999999999999998888876544322 23466999999999998 677776 4578887776554
No 143
>PF14501 HATPase_c_5: GHKL domain
Probab=98.22 E-value=1.4e-05 Score=75.50 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1105)
|+.-|-.+|.|||+||++++.. ..|.+.+.. ....+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~----------------------------------------~~~~~ 41 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIRE----------------------------------------ENGFL 41 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe----------------------------------------cCCEE
Confidence 4567889999999999998642 244444321 12357
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYL 682 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~l 682 (1105)
.|.|.++-.+ + .++++ +++.+..+.|+||..++++++.++|++.++.+.+ .|++.+
T Consensus 42 ~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f~~~i 97 (100)
T PF14501_consen 42 VIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IFTVKI 97 (100)
T ss_pred EEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EEEEEE
Confidence 7899998544 1 12222 1234567899999999999999999999987644 455544
No 144
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.22 E-value=9.4e-06 Score=106.27 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=99.1
Q ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 946 ~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.+.+.+||++||++..+..++.+|+..|+.+..+.++.+ +. ...||++++|..
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~-----------------------~~~~d~il~~~~ 585 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP-----------------------EAHYDILLLGLP 585 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc-----------------------cCCCCEEEeccc
Confidence 356789999999999999999999999999999999887 22 247999999999
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
||.+++.+.+......... ...++|+++..........+.+.|+++|+.||++..+|...+....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 586 VTFREPLTMLHERLAKAKS---MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCCCCCHHHHHHHHHhhhh---cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 9998877665555443222 2357888898888889999999999999999999999999987755
No 145
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.17 E-value=8.3e-06 Score=68.61 Aligned_cols=62 Identities=48% Similarity=0.697 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 484 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlsk 484 (1105)
+.++++.++|||||||++|.++++.+.......++....+..+..++.++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999998765444566677888899999999999999999875
No 146
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.17 E-value=1.6e-06 Score=101.23 Aligned_cols=92 Identities=27% Similarity=0.416 Sum_probs=81.4
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceE
Q 001298 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053 (1105)
Q Consensus 974 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipII 1053 (1105)
++|..+..|.+|++.+.. +++|.++.|++||+|||+|+|+++++.. .+++
T Consensus 13 ~~v~~a~~g~~~l~~~~~-----------------------~~~~~~lld~~m~~~~~~~~~~~lk~~~-------~~~v 62 (435)
T COG3706 13 KEVATAKKGLIALAILLD-----------------------HKPDYKLLDVMMPGMDGFELCRRLKAEP-------ATVV 62 (435)
T ss_pred hhhhhccchHHHHHHHhc-----------------------CCCCeEEeecccCCcCchhHHHHHhcCC-------cceE
Confidence 467779999999998853 6899999999999999999999999753 2399
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1054 ALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
++|+.....+..+.+++|++++|+||++...+..+...+...
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 63 MVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred EEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 999999999999999999999999999999999888776543
No 147
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=98.06 E-value=2.5e-06 Score=77.28 Aligned_cols=71 Identities=18% Similarity=0.523 Sum_probs=60.8
Q ss_pred eeeee-ecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCCC
Q 001298 205 WHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 278 (1105)
Q Consensus 205 w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 278 (1105)
|+..| +..++.++++++.|||+. +|+++||++++..+..+.++++.+..+..|.+|+.|++|.+++++..+
T Consensus 1 ~s~py~~~~~~~~vi~~s~pi~~~---~g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp~~~ 72 (81)
T PF02743_consen 1 WSEPYVDAATGQPVITISVPIYDD---DGKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAHPDKD 72 (81)
T ss_dssp E---EEETTTTEEEEEEEEEEEET---TTEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-SSGG
T ss_pred CCcCEEeCCCCcEEEEEEEEEECC---CCCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEEeCChH
Confidence 77444 555689999999999996 899999999999999999999999999999999999999999987653
No 148
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=9.1e-05 Score=84.82 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEe
Q 001298 538 GRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDD 617 (1105)
Q Consensus 538 ~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~D 617 (1105)
..+.+++.|||.||+++.. ..|.|.+.. ++ ...|+|.|
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~---------------------------------------~~--~~~i~V~D 58 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE---------------------------------------GG--LKLIEVSD 58 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe---------------------------------------CC--EEEEEEEe
Confidence 4678999999999999854 455554311 11 24589999
Q ss_pred CCCCCChhhHhhhhcccccCCCCC------CCCCCCccchHHHHHHHHHHcCCEEEEEEeC--CCceEEEEE
Q 001298 618 TGCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN--SPGTLMQLY 681 (1105)
Q Consensus 618 tG~GI~~e~l~~IFe~F~q~~~s~------~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~--g~GT~f~~~ 681 (1105)
+|.||++++++++|++|+..+... ....|--|.||+-...+ +++.|.|.. +.+..+.+.
T Consensus 59 nG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 59 NGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 999999999999999999765422 12235557787654443 378888875 444444443
No 149
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00012 Score=83.85 Aligned_cols=115 Identities=20% Similarity=0.270 Sum_probs=83.3
Q ss_pred eCHHHHHHHHHHHHhhHhcccCCCcE----EEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSSGHI----IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~G~i----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1105)
+-..-|.|++.-|+.||+..|+.-+| .|.+. ..++..
T Consensus 32 ~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------~~~~d~ 72 (538)
T COG1389 32 GPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------RIGKDH 72 (538)
T ss_pred CchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE---------------------------------------ecCCce
Confidence 34567999999999999999976443 33221 122446
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCC-CC-CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCC-ceEEEEEEecCC
Q 001298 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPS-TT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP-GTLMQLYLLLGA 686 (1105)
Q Consensus 611 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s-~~-~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~-GT~f~~~lpl~~ 686 (1105)
..+.|.|||+|||+++++++|-++.-++.- .. +.-|--|||.+-|=-..++.-|+ +.|.|..+. ++...+.|-+..
T Consensus 73 y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~ 152 (538)
T COG1389 73 YKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDV 152 (538)
T ss_pred EEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecC
Confidence 789999999999999999999887554432 11 12255699999998889998886 677776554 787777776655
Q ss_pred CC
Q 001298 687 SS 688 (1105)
Q Consensus 687 ~~ 688 (1105)
..
T Consensus 153 ~k 154 (538)
T COG1389 153 QK 154 (538)
T ss_pred CC
Confidence 43
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.42 E-value=0.00077 Score=66.09 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1105)
+...+.-++.-++.||++|+.. +.|.|.... ....+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~----------------------------------------~~~~l 67 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV----------------------------------------DPDRL 67 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE----------------------------------------cCCEE
Confidence 4457888999999999999865 345554321 12248
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~ 681 (1105)
.++|.|.|.|+++.....-... ........|+||.|++++++.+ .+ + .+.|+++++.
T Consensus 68 ~i~v~D~G~~~d~~~~~~~~~~-------~~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 68 RISVRDNGPGFDPEQLPQPDPW-------EPDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEECCCCCChhhccCcccc-------cCCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 8999999999988765432210 0022346799999999999986 44 3 7789988764
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.73 E-value=0.0096 Score=45.97 Aligned_cols=54 Identities=41% Similarity=0.647 Sum_probs=48.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
+|++++|++..+..+...+...|+.+..+.++.++...+.. ..||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE-----------------------EKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCC
Confidence 68999999999999999999999999999999999987753 3699999998775
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.67 E-value=0.011 Score=56.99 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=75.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEEEcCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LILMDCQMPKM 1029 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-lIlmDi~MP~m 1029 (1105)
||||+|||..-+.-+..+|+-+|.++..+...+- ...... .+.+ +++....++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~-----------------------~~~~~~~v~~g~~~-- 54 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS-----------------------SPWEACAVILGSCS-- 54 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh-----------------------cCCcEEEEEecCch--
Confidence 6999999999999999999999999998886543 121111 1333 445555554
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
...+.++.+-+. .+++|++.+..+....+. ..+-+-|..|++..+|.+.++++
T Consensus 55 ~~~~~l~~l~~~-----~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 55 KLAELLKELLKW-----APHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred hHHHHHHHHHhh-----CCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 344555555543 367999999987766221 11666799999999999999875
No 153
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.40 E-value=0.013 Score=73.32 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
++..|+..||+|||... ...|.|.+. .+ ....|+|.|+
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~---------------------------------------~~--g~~~i~V~Dn 59 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE---------------------------------------EG--GLKLIRVRDN 59 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE---------------------------------------eC--CeEEEEEEEc
Confidence 56789999999999964 445555431 11 1256899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 619 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
|+||++++++.+|.+++...-... ...|=-|.||+-.-.+ +++.|.|..
T Consensus 60 G~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 60 GCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred CCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 999999999999998875432210 1223356777655443 356666654
No 154
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.13 E-value=0.042 Score=55.74 Aligned_cols=95 Identities=21% Similarity=0.252 Sum_probs=63.8
Q ss_pred eCHHHHHHHHHHHHhhHhcccCC-----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCce
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSS-----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKL 609 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~-----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1105)
-|-.+++-++.-++.||++|..+ |.|.|.+... + .
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--------------------------------------~--~ 75 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--------------------------------------D--G 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--------------------------------------C--C
Confidence 36778999999999999999865 6777664321 1 2
Q ss_pred EEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEE
Q 001298 610 ALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQ 679 (1105)
Q Consensus 610 ~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~ 679 (1105)
.+.+.|.|.|+||.+ .+..+.+.+... ..-..-|+||.+.++++. ++.+++..+.+.+++
T Consensus 76 ~~~i~i~D~G~~~~~--~~~~~~~~~~~~----~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~~~~~ 135 (146)
T COG2172 76 KLEIRIWDQGPGIED--LEESLGPGDTTA----EGLQEGGLGLFLAKRLMD----EFSYERSEDGRNRLT 135 (146)
T ss_pred eEEEEEEeCCCCCCC--HHHhcCCCCCCC----cccccccccHHHHhhhhe----eEEEEeccCCceEEE
Confidence 378999999988754 444555542211 111233899999999775 577886666644443
No 155
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.11 E-value=0.49 Score=46.46 Aligned_cols=111 Identities=20% Similarity=0.106 Sum_probs=78.0
Q ss_pred EEEE----eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 952 ILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 952 ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
|++. |.+..=...+..+|+..||+|....- .++.++.+.+ ..+|+|.+-+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~-----------------------~~~d~V~iS~ 58 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ-----------------------EDVDVIGLSS 58 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcc
Confidence 5555 66677777888899999999987553 5566666653 4799999998
Q ss_pred CCCCCCH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Q 001298 1025 QMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090 (1105)
Q Consensus 1025 ~MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1090 (1105)
.|+..-. -++++++|+. +...++ |++-+....++..+..++|+|+|+..--+.++....|+
T Consensus 59 ~~~~~~~~~~~~~~~L~~~----~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 59 LSGGHMTLFPEVIELLREL----GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred cchhhHHHHHHHHHHHHhc----CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 8864332 2344555543 112344 55555566777888999999999999989888877654
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.02 E-value=0.39 Score=48.25 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=87.0
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+.+||+. |.+..-..++..+|+..||+|..... .++.++.+.+ ..+|+|.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----------------------~~~d~V~ 59 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----------------------TDADAIL 59 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4688998 89999999999999999999988654 4555555543 4799999
Q ss_pred EcCCCCCCC--HHHHHHHHHccccccCCCCcceEEEeccC------CHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1022 MDCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1022 mDi~MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
+-+.|+... --++.+++|+. +.++++|++ -+.. ..++..+..+.|+|.+....-+.++....|++.+
T Consensus 60 lS~~~~~~~~~~~~~~~~L~~~----~~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 60 VSSLYGHGEIDCRGLREKCIEA----GLGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred EcCccccCHHHHHHHHHHHHhc----CCCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 999887543 24455566643 223455443 3332 4556678899999999999999999999988776
Q ss_pred h
Q 001298 1094 K 1094 (1105)
Q Consensus 1094 ~ 1094 (1105)
+
T Consensus 135 ~ 135 (137)
T PRK02261 135 N 135 (137)
T ss_pred c
Confidence 4
No 157
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=94.71 E-value=0.02 Score=57.44 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCCccch--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEE
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLG--LSIVRTLVNKMGGEIKVVKKNS-PGTLMQLYL 682 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s--~~~~~~GtGLG--LaIvk~LVe~~gG~I~v~S~~g-~GT~f~~~l 682 (1105)
.|.|.|+|.||+.+.+.++|...+..... .....|-.|+| +|+. .++..+.|.|... ....++|..
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEE
Confidence 48899999999999999977654432210 12234667888 4443 4688899999864 333444444
No 158
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.03 E-value=1.6 Score=43.66 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=75.5
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHH
Q 001298 956 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGY 1032 (1105)
Q Consensus 956 dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~ 1032 (1105)
|-+..-..++..+|+..||+|.-.. ..++.++.+.+ ..+|+|.+-..|... .
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----------------------~~adii~iSsl~~~~--~ 67 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----------------------ADVHVVGVSSLAGGH--L 67 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEcCchhhh--H
Confidence 4555666788899999999998654 46677777653 479999987666322 3
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
+.++.+.+.-.+.+..+++|+ +-+....++.....++|+|+|+..=-+..+.++.+...+
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 333333332112122244444 455555667888999999999999889999888887755
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=92.36 E-value=0.25 Score=61.97 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhHhcccCCC---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 612 (1105)
+...|..++.-||+||+.....| .|.|.+. .++ .
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~---------------------------------------~dg----~ 70 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH---------------------------------------ADG----S 70 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe---------------------------------------CCC----c
Confidence 67789999999999999875444 3444321 111 4
Q ss_pred EEEEeCCCCCChhhHhh--------hhcccccCCCC----CCCCCCCccchHHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSKWET--------VFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l~~--------IFe~F~q~~~s----~~~~~~GtGLGLaIvk~LVe~ 661 (1105)
|+|.|+|+|||.+..+. +|....-+..- .....|=.|.||+.|..+-+.
T Consensus 71 I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 71 VSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred EEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 89999999999998888 88764332211 111123379999999888553
No 160
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=91.86 E-value=0.21 Score=62.52 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=33.5
Q ss_pred EEEEEeCCCCCChhh--------Hhhhh-cccccCC--CCCCCC-CCCccchHHHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSK--------WETVF-ESFEQGD--PSTTRK-HGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~--------l~~IF-e~F~q~~--~s~~~~-~~GtGLGLaIvk~LVe~ 661 (1105)
.|+|.|+|.|||.+. ++-+| .+..... ....+. .|=.|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 389999999999988 78788 3332111 111112 23379999999988873
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.66 E-value=2.2 Score=41.41 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=64.0
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC--C
Q 001298 956 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--D 1030 (1105)
Q Consensus 956 dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m--d 1030 (1105)
|.+..-...+..+|+..||+|.... ..++.++.+.+ ..||+|.+-+.|... +
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----------------------~~pdvV~iS~~~~~~~~~ 66 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADAIGLSGLLTTHMTL 66 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccccHHH
Confidence 6667777889999999999996643 34455555543 479999999876543 2
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
..++.+.+|+..+ .+++| ++.+.........+.+.|+|.|+..
T Consensus 67 ~~~~i~~l~~~~~----~~~~i-~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 67 MKEVIEELKEAGL----DDIPV-LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHcCC----CCCeE-EEECCCCChhHHHHHHcCCeEEECC
Confidence 3566677776421 14554 4555554445567889999888874
No 162
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=90.93 E-value=3.8 Score=38.32 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=74.6
Q ss_pred EEeecChhhHHHHHHHHHhcCc-eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 704 VLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 704 ~~~~~~~~~r~~~~~~~~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
++.+.....+..+..+++..|+ .+..+.+..++...+.. .+..++
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~----------------------------------~~~d~i 47 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK----------------------------------HPPDLI 47 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH----------------------------------STESEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc----------------------------------cCceEE
Confidence 4567777888889999999998 66666665555544322 235789
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHH
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLL 850 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l 850 (1105)
++|..+.+.++..+-+.++... ....+..+. .........+..+.|...++.||+....+.+.+
T Consensus 48 iid~~~~~~~~~~~~~~i~~~~---~~~~ii~~t-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 48 IIDLELPDGDGLELLEQIRQIN---PSIPIIVVT-DEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEESSSSSSBHHHHHHHHHHHT---TTSEEEEEE-SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred EEEeeecccccccccccccccc---ccccEEEec-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 9999999987765555544322 333333333 344455666777899999999999999888765
No 163
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=90.18 E-value=1.4 Score=42.79 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC--CHHHHHHHHHc
Q 001298 963 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRK 1040 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~ 1040 (1105)
..+...|++.|++|..+.+..+|+..++. ...++.|++|+. +.. ...++++.||+
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~----------------------~~~i~avvi~~d-~~~~~~~~~ll~~i~~ 63 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIES----------------------FTDIAAVVISWD-GEEEDEAQELLDKIRE 63 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHC----------------------TTTEEEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHh----------------------CCCeeEEEEEcc-cccchhHHHHHHHHHH
Confidence 34667788899999999999999999974 357899999986 221 23578888887
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCH-HHHHHHHHHHh
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLT 1093 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~-~~L~~~I~~l~ 1093 (1105)
.. ..+||.+++.+...+..-...-.-.++|+...-+- +....+|.+..
T Consensus 64 ~~-----~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 64 RN-----FGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp HS-----TT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred hC-----CCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 53 46999999987755555555666789999987754 44445555443
No 164
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.92 E-value=0.97 Score=52.07 Aligned_cols=85 Identities=24% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcce
Q 001298 973 GATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPI 1052 (1105)
Q Consensus 973 g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipI 1052 (1105)
|.++..+.+..++-..+. .-.+|++|..| .+ ..++...+ ++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~-----~~--~~~~~~~p----~~~~v 44 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA-------------------------RAPLVLVDADM-----AE--ACAAAGLP----RRRRV 44 (322)
T ss_pred CCceEEccCchhhhhccc-------------------------cCCeEEECchh-----hh--HHHhccCC----CCCCE
Confidence 456677777666655553 36789999755 22 22333222 12346
Q ss_pred EEEec-cCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1053 VALTA-HAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1053 IalTa-~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
|+++. ..+.+...+++.+|+.+||.+|++..+|.+.+.++.
T Consensus 45 v~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 45 VLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred EEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 65555 456788889999999999999999999999998874
No 165
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=89.57 E-value=0.58 Score=59.08 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhhHhcccCCC---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 612 (1105)
|+.-|.+++.-||.||+.-...| .|.|.+. .++ .
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 63 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN---------------------------------------DDG----S 63 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56778999999999999843334 4444321 112 2
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCC---CCCC-CCCCCccchHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSKWE--------TVFESFEQGD---PSTT-RKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l~--------~IFe~F~q~~---~s~~-~~~~GtGLGLaIvk~LVe 660 (1105)
|+|.|+|+|||.+.-+ -||.-...+. .... ...|-.|.||+.+..+-+
T Consensus 64 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 64 VTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred EEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 8999999999987422 2443321111 1111 122347999999988876
No 166
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=89.24 E-value=1.2 Score=42.73 Aligned_cols=113 Identities=23% Similarity=0.312 Sum_probs=80.9
Q ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 946 ~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.+.|.+.+.||.|.........+|...+.+|+.-.... .+ ....||++|+.+-
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l-----------------------p~~hYD~~Ll~va 60 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL-----------------------PPAHYDMMLLGVA 60 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc-----------------------Chhhhceeeeccc
Confidence 46789999999999999999999999999887654332 11 1246999999988
Q ss_pred CCCCCHHHHH--HHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Q 001298 1026 MPKMDGYEAT--IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090 (1105)
Q Consensus 1026 MP~mdG~e~~--~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1090 (1105)
.+--+-..+- +-.|... ..+--|+++-.++.. ..++..+-|+-++|.||++...|+..+.
T Consensus 61 vtfr~n~tm~~~~l~~Al~----mtd~vilalPs~~qv-~AeqLkQ~g~~~CllKPls~~rLlptll 122 (140)
T COG4999 61 VTFRENLTMQHERLAKALS----MTDFVILALPSHAQV-NAEQLKQDGAGACLLKPLSSTRLLPTLL 122 (140)
T ss_pred ccccCCchHHHHHHHHHHh----hhcceEEecCcHHHH-hHHHHhhcchHhHhhCcchhhhhHHHHH
Confidence 7765543322 1122211 234568888776654 4556789999999999999999998553
No 167
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=88.82 E-value=4.8 Score=44.11 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=84.2
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.++...-+..+...+...|..+..+.+.......+. .. +.++
T Consensus 3 ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------------------------------~~-~dlv 47 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR----------------------------------EQ-PDLV 47 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------cC-CCEE
Confidence 556677777788889999999988877765543332211 12 5789
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++|++++++++..+...++.. ......+++.+..+....+..--..|.+-++.||+....+..-+...++.
T Consensus 48 iLD~~lP~~dG~~~~~~iR~~---~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 48 LLDLMLPDLDGLELCRRLRAK---KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred EEECCCCCCCHHHHHHHHHhh---cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 999999999996655555432 22334456677777777777888899999999999999999888887664
No 168
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=88.07 E-value=0.89 Score=57.14 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhhHhcccCCC---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEE
Q 001298 536 DPGRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALC 612 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT~~G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 612 (1105)
|+.-|.+++.-||+||+.-...| .|.|.+. .++ .
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~---------------------------------------~~g----~ 70 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN---------------------------------------EDG----S 70 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe---------------------------------------CCC----c
Confidence 56788999999999999844344 4544321 111 4
Q ss_pred EEEEeCCCCCChhhHh--------hhhcccccCC---CCCCC-CCCCccchHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSKWE--------TVFESFEQGD---PSTTR-KHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l~--------~IFe~F~q~~---~s~~~-~~~GtGLGLaIvk~LVe 660 (1105)
|+|.|+|+|||.+.-+ -||.-...+. ....+ ..|=.|.||+.+..+-+
T Consensus 71 I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 71 ITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred EEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 8999999999997433 2454331111 11111 22446999999988877
No 169
>PRK05218 heat shock protein 90; Provisional
Probab=88.01 E-value=1.9 Score=54.16 Aligned_cols=57 Identities=14% Similarity=0.339 Sum_probs=36.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC-----------C-CCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQG-----------D-PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~-----------~-~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++..-|.+.-.. + .....-.|-.|+|+.=| =+.+-++.|.|+.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcC
Confidence 38999999999999999876433211 0 00112246688998532 2335678888865
No 170
>PRK14083 HSP90 family protein; Provisional
Probab=87.15 E-value=0.71 Score=57.44 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc----cCC---CCCCCCCCCccchHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFE----QGD---PSTTRKHGGTGLGLSIVR 656 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~----q~~---~s~~~~~~GtGLGLaIvk 656 (1105)
.|+|.|||+||+.+++.+.|-..- +.. .......|..|+|+.=|-
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F 115 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCF 115 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEE
Confidence 589999999999999998763221 110 001122467888876543
No 171
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.87 E-value=1.9 Score=42.82 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.2
Q ss_pred HHHHHHHhhHhcccCCCcEEEEee
Q 001298 542 QIFSNLINNSIKFTSSGHIIIRGW 565 (1105)
Q Consensus 542 QIL~NLL~NAIKfT~~G~i~v~~~ 565 (1105)
-+..-||.||+||...|.|+|.+.
T Consensus 66 Yl~NELiENAVKfra~geIvieas 89 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEAS 89 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEE
Confidence 466789999999999999988753
No 172
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=84.77 E-value=1.3 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGD 638 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~ 638 (1105)
.|.|.|||+||++++++-.+.++...+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 389999999999999999999987543
No 173
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=84.37 E-value=14 Score=36.95 Aligned_cols=110 Identities=12% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC--H
Q 001298 957 DTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD--G 1031 (1105)
Q Consensus 957 D~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md--G 1031 (1105)
=+..-..++..+|+..||+|.-. ...++.++.+.+ +.+|+|-+-..|-..- -
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----------------------~~adiVglS~l~~~~~~~~ 69 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----------------------TKADAILVSSLYGHGEIDC 69 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEecccccCHHHH
Confidence 34455678889999999999865 455666666643 4799999988774322 1
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccC--CHHH----HHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHA--MNAD----EKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~--~~~~----~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
-++.+++|+. +...++ |++-+.. ..++ +.+..+.|++......-.++++.+.|++.++
T Consensus 70 ~~~~~~l~~~----gl~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 70 KGLRQKCDEA----GLEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHHC----CCCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 2344455542 223444 5555531 2222 4468899999999988899999998887653
No 174
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=84.30 E-value=18 Score=35.99 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC-CH-H
Q 001298 958 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-DG-Y 1032 (1105)
Q Consensus 958 ~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m-dG-~ 1032 (1105)
+..-..++..+|+..||+|.-. ...++.++...+ +.+|+|.+-..|... .. -
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-----------------------~~adiVglS~L~t~~~~~~~ 68 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-----------------------TDADAILVSSLYGHGEIDCK 68 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEeccccCCHHHHH
Confidence 4455678889999999999864 345566666543 479999998887543 22 3
Q ss_pred HHHHHHHccccccCCCCcceEEEeccC--C----HHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHA--M----NADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~--~----~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1090 (1105)
++.+.+|+. +..++||+ +-+.. . .+++.+..++|+|......-+++++...|+
T Consensus 69 ~~~~~l~~~----gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 69 GLREKCDEA----GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHHHC----CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 444555542 23355554 44431 1 344567889999999998888888877664
No 175
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.83 E-value=10 Score=41.66 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=63.3
Q ss_pred HHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC----------CCCHHHH
Q 001298 967 KILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----------KMDGYEA 1034 (1105)
Q Consensus 967 ~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP----------~mdG~e~ 1034 (1105)
+.|-+.||.|. ++.|..+|-.+.. -.+|+| || ..+ .+.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~------------------------~G~~~v-----mPlg~pIGsg~gi~~-~~~ 166 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE------------------------AGCAAV-----MPLGAPIGSGLGLLN-PYN 166 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH------------------------cCCCEe-----CCCCcCCCCCCCCCC-HHH
Confidence 33445699887 4456666555443 257777 77 123 678
Q ss_pred HHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHh
Q 001298 1035 TIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1035 ~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1093 (1105)
++.|++. .++|||+=.+-...+|..+|++.|+|+.+. |--++..+..+....+
T Consensus 167 i~~i~e~------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 167 LRIIIEQ------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred HHHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 8888864 248999988899999999999999999975 6455666666554443
No 176
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=83.41 E-value=11 Score=41.47 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-------
Q 001298 957 DTPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP------- 1027 (1105)
Q Consensus 957 D~~~~~~~l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP------- 1027 (1105)
|.....+..+. |-+.||.|. ++.|...|-.+.. -.+++| ||
T Consensus 108 d~~~tv~aa~~-L~~~Gf~vlpyc~dd~~~ar~l~~------------------------~G~~~v-----mPlg~pIGs 157 (248)
T cd04728 108 DPIETLKAAEI-LVKEGFTVLPYCTDDPVLAKRLED------------------------AGCAAV-----MPLGSPIGS 157 (248)
T ss_pred CHHHHHHHHHH-HHHCCCEEEEEeCCCHHHHHHHHH------------------------cCCCEe-----CCCCcCCCC
Confidence 33333443433 445699887 4455655555443 257777 77
Q ss_pred ---CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHh
Q 001298 1028 ---KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1028 ---~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1093 (1105)
..+ .++++.|++. ..+|||+=.+-..+++..+|++.|+|+++. |.-++..+..+....+
T Consensus 158 g~Gi~~-~~~I~~I~e~------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 158 GQGLLN-PYNLRIIIER------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred CCCCCC-HHHHHHHHHh------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 123 7888888864 248999988899999999999999999975 6455666666655443
No 177
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.26 E-value=25 Score=35.53 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEE---ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSV---VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
..|||++ |-+..=.+++.+.|+..||+|.. .....|+++..-+ +..|+|.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-----------------------~dv~vIg 68 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-----------------------EDVDVIG 68 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 3566664 67777789999999999999986 4678888876632 3688887
Q ss_pred EcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1022 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1022 mDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+..- .-...+++..+++...+.+..++. ++.-+.-..++..+..+.|+|.++.--.+..+..+.+...+.
T Consensus 69 vSsl--~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 69 VSSL--DGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred EEec--cchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 6542 122356666666554444545555 456677777888888899999999977777777766655544
No 178
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.32 E-value=9 Score=36.94 Aligned_cols=93 Identities=27% Similarity=0.351 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC-CCCCCC-HH
Q 001298 958 TPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC-QMPKMD-GY 1032 (1105)
Q Consensus 958 ~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi-~MP~md-G~ 1032 (1105)
.+.-...+..+|++.|++|... .+.++..+.+.+ ..||+|.+.+ ..+... ..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-----------------------~~pd~V~iS~~~~~~~~~~~ 69 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-----------------------ERPDVVGISVSMTPNLPEAK 69 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-----------------------TTCSEEEEEESSSTHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-----------------------CCCcEEEEEccCcCcHHHHH
Confidence 3556778999999999999877 334555565653 3799999998 444443 35
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHh--cCCCEEEEcC
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG--VGMNAYLTKP 1079 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP 1079 (1105)
++++.+|+.. ++++||+=-.+.+ ..-..+++ .|+|..+.-.
T Consensus 70 ~l~~~~k~~~-----p~~~iv~GG~~~t-~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 70 RLARAIKERN-----PNIPIVVGGPHAT-ADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHTTC-----TTSEEEEEESSSG-HHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHhcC-----CCCEEEEECCchh-cChHHHhccCcCcceecCCC
Confidence 6666666532 4466665554444 34455665 7999877654
No 179
>PRK11677 hypothetical protein; Provisional
Probab=79.91 E-value=18 Score=36.17 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHH
Q 001298 380 CILVIGCICILILTNGVSKEMKLRAELISHLDARRKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQY 459 (1105)
Q Consensus 380 ~i~li~~~~~~~l~~~i~~~~~l~~~l~~~l~a~~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~ 459 (1105)
+.+++|+++++++.|...+..+...++.++++.. ..+..++|.+.....+ -.+++|. .+....+
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~--k~ele~YkqeV~~HFa-----------~TA~Ll~---~L~~~Y~ 71 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKN--KAELEEYRQELVSHFA-----------RSAELLD---TMAKDYR 71 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHH
Confidence 3444555555555554444434444444443322 2233445555443333 2334442 1334444
Q ss_pred HHHHHHHHHHHHHH
Q 001298 460 STVCQIKKSSYALL 473 (1105)
Q Consensus 460 ~~l~~I~~ss~~L~ 473 (1105)
+..+.+.+++.+|+
T Consensus 72 ~Ly~HlA~~s~~Ll 85 (134)
T PRK11677 72 QLYQHMAKSSSELL 85 (134)
T ss_pred HHHHHHHHHHHHHc
Confidence 55555666665554
No 180
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=78.63 E-value=16 Score=46.54 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 951 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 951 ~ILIvdD~~-~~-----~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
+|+|++++. .+ .+.+..-|++.|++|..+.+..+++..++. ....+.|++|.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH----------------------NPRICGVIFDW 59 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 567776663 22 344566788899999999999999998863 34688999985
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi 1080 (1105)
+-. ..++++.||+.. ..+||+++.......+.-...-.-.++|+..--
T Consensus 60 ~~~---~~~~~~~~~~~~-----~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (713)
T PRK15399 60 DEY---SLDLCSDINQLN-----EYLPLYAFINTHSTMDVSVQDMRMALWFFEYAL 107 (713)
T ss_pred ccc---hHHHHHHHHHhC-----CCCCEEEEcCccccccCChhHhhhcceeeeecc
Confidence 332 355888888753 469999998754433322222233556665433
No 181
>PTZ00130 heat shock protein 90; Provisional
Probab=77.87 E-value=3 Score=53.11 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=27.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------cc---cCCCCCCCCCCCccchHHHH
Q 001298 612 CFEVDDTGCGIDQSKWETVFES--------FE---QGDPSTTRKHGGTGLGLSIV 655 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~--------F~---q~~~s~~~~~~GtGLGLaIv 655 (1105)
.|+|.|||+||+++++..-+-. |. +.......-.|-.|+|+.=|
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSa 190 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA 190 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhhe
Confidence 4789999999999997643311 21 11011122357789999766
No 182
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=76.85 E-value=17 Score=46.32 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=57.1
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 951 RILLAEDTP-LI-----QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 951 ~ILIvdD~~-~~-----~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
+||+++++. .+ .+.+..-|++.|++|..+.+..+++..++. ....+.|+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 59 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDW 59 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------ccceeEEEEec
Confidence 466666552 11 345666788899999999999999998863 34688899884
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCH
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMN 1061 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~ 1061 (1105)
+- . ..++++.||+.. ..+||+++......
T Consensus 60 ~~--~-~~~~~~~~~~~~-----~~~Pv~~~~~~~~~ 88 (714)
T PRK15400 60 DK--Y-NLELCEEISKMN-----ENLPLYAFANTYST 88 (714)
T ss_pred ch--h-hHHHHHHHHHhC-----CCCCEEEEcccccc
Confidence 22 1 245888888752 46999999875433
No 183
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=76.83 E-value=21 Score=43.11 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=83.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.++...-|..+.+++...|..+..+....++...+.. .++.+
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~----------------------------------~~~~l 51 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE----------------------------------SPFDL 51 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777888888999999999999888887776665544321 14578
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++.|+.++++++-.+-+.+... . ....+++.+....-+...+..+.|..-++.||+...++..++..+...+
T Consensus 52 vl~Di~mp~~~Gl~ll~~i~~~---~-~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 52 VLLDIRMPGMDGLELLKEIKSR---D-PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EEEecCCCCCchHHHHHHHHhh---C-CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999985544333321 2 2233444444444444556677889999999999999999988877643
No 184
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=76.76 E-value=3 Score=52.12 Aligned_cols=48 Identities=27% Similarity=0.476 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCC---CCCC-CCCCccchHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWE--------TVFESFEQGDP---STTR-KHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~---s~~~-~~~GtGLGLaIvk~LV 659 (1105)
.|+|.|+|.|||-+..+ -||.....+.. .... ..|-.|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976533 33443322111 1111 2244699999988774
No 185
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.05 E-value=21 Score=38.26 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=68.0
Q ss_pred CEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 950 LRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 950 ~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
.+||+. |-+..=...+..+|+..||+|.-.. ..++.++.+.+ ..||+|-+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----------------------~~~d~v~l 139 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----------------------HKPDILGL 139 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 578888 7888778889999999999997543 34566666643 47999999
Q ss_pred cCCCCCCC--HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1023 DCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1023 Di~MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-+.|+..- .-++.+.+|+... ..+++|++=-+... .+ -+-+.|+|.|-.
T Consensus 140 S~~~~~~~~~~~~~i~~lr~~~~---~~~~~i~vGG~~~~-~~--~~~~~GaD~~~~ 190 (201)
T cd02070 140 SALMTTTMGGMKEVIEALKEAGL---RDKVKVMVGGAPVN-QE--FADEIGADGYAE 190 (201)
T ss_pred eccccccHHHHHHHHHHHHHCCC---CcCCeEEEECCcCC-HH--HHHHcCCcEEEC
Confidence 99887642 3455566665421 12566665544433 33 566789999975
No 186
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=74.97 E-value=38 Score=36.07 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=52.2
Q ss_pred CccEEEEcCCCCCC--------CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCH
Q 001298 1016 RFDLILMDCQMPKM--------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDS 1082 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~m--------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~ 1082 (1105)
..|+|...--.|.. .|++..+++++.. .++||++.-+- ..++..+++++|+|.+.. +.-++
T Consensus 124 gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 124 GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-----GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDP 197 (212)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCH
Confidence 68999887555533 3688888888642 23899988766 578888999999999985 54566
Q ss_pred HHHHHHHHHHhh
Q 001298 1083 ERMVSTILRLTK 1094 (1105)
Q Consensus 1083 ~~L~~~I~~l~~ 1094 (1105)
.+....+.+.++
T Consensus 198 ~~~~~~l~~~~~ 209 (212)
T PRK00043 198 EAAARALLAAFR 209 (212)
T ss_pred HHHHHHHHHHHh
Confidence 665555555544
No 187
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=74.96 E-value=3.7 Score=51.95 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=16.9
Q ss_pred EEEEEeCCCCCChhhHhhhh
Q 001298 612 CFEVDDTGCGIDQSKWETVF 631 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IF 631 (1105)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57999999999999876554
No 188
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=74.13 E-value=27 Score=37.80 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=67.6
Q ss_pred CEEEEE----eCCHHHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 950 LRILLA----EDTPLIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 950 ~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
.+|++. |.+..=..++..+|+..||+|.-... .++.++.+.+ ..||+|.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~-----------------------~~~~~V~l 145 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE-----------------------HKADIIGL 145 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 478888 88888888999999999999987653 4555566543 47999999
Q ss_pred cCCCCCC-CH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHH---HHhcCCCEEEEc
Q 001298 1023 DCQMPKM-DG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKK---CLGVGMNAYLTK 1078 (1105)
Q Consensus 1023 Di~MP~m-dG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~K 1078 (1105)
-+.|+.. .. -++.+++|+. + .+++|++--+-...+...+ |-..|+|.|-.=
T Consensus 146 S~~~~~~~~~~~~~i~~L~~~----~-~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 146 SGLLVPSLDEMVEVAEEMNRR----G-IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred ccchhccHHHHHHHHHHHHhc----C-CCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 9998743 22 3455556543 1 3577665554444333322 345799988653
No 189
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=73.25 E-value=2.8 Score=53.45 Aligned_cols=88 Identities=25% Similarity=0.403 Sum_probs=51.6
Q ss_pred CceEEeCH---HHHHHHHHHHHhhHhcccCCC---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhcccccc
Q 001298 530 PRNVRGDP---GRVFQIFSNLINNSIKFTSSG---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNF 603 (1105)
Q Consensus 530 p~~v~gD~---~rL~QIL~NLL~NAIKfT~~G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (1105)
|....|+- .-|..++.-||+|||.-.-.| .|.|.+.
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~-------------------------------------- 66 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIH-------------------------------------- 66 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEc--------------------------------------
Confidence 44455643 458999999999999843334 3444321
Q ss_pred ccCCceEEEEEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCCccchHHHHHHHHH
Q 001298 604 REDNKLALCFEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 604 ~~~~~~~l~~~V~DtG~GI~~e~l--------~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe 660 (1105)
.++ .|+|.|+|.|||.+.- +-+|....-+.. ...-..|=.|.|++.|..+-+
T Consensus 67 -~dg----sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 67 -ADG----SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred -CCC----eEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcccccCCccCccceEeehccC
Confidence 112 4899999999999732 223332111111 111112346899999888776
No 190
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=72.21 E-value=30 Score=44.28 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=79.5
Q ss_pred CEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 950 LRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 950 ~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
.+|+++ |.+..-..++..+|+..||+|..- .+.+++++.+.+ ..+|+|.+
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~-----------------------~~a~ivvl 639 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE-----------------------NDVHVVGV 639 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH-----------------------cCCCEEEE
Confidence 355543 345555678888999999999643 346677777653 36899888
Q ss_pred cCCCCCC--CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1023 DCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1023 Di~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
...|... ..-++++.+|+.. ..+++|+ +.+..-+++...+.++|+|+|+..=.+..+++..+.+.+.
T Consensus 640 cs~d~~~~e~~~~l~~~Lk~~G----~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 640 SSLAAGHKTLVPALIEALKKLG----REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred eccchhhHHHHHHHHHHHHhcC----CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 6655433 2345667777542 1234443 5555445566778899999999999999999888887764
No 191
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=67.11 E-value=38 Score=44.70 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=81.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...+...|..+..+.....+...++ ..++.
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------------------------------~~~~d 736 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGR----------------------------------QHRFD 736 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------------------------------cCCCC
Confidence 46888899999999999999999887776665544332221 12457
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
++++|..++++++....+.++...........+++..............+.|.+.++.||+....+...+....
T Consensus 737 lil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 737 LVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 89999999999886655555432211112223334444444555666777899999999999999988887654
No 192
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.54 E-value=73 Score=31.42 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001298 458 QYSTVCQIKKSSYALL 473 (1105)
Q Consensus 458 ~~~~l~~I~~ss~~L~ 473 (1105)
.++..+.+..++.+|+
T Consensus 75 YqklyqHmA~ss~~Ll 90 (138)
T COG3105 75 YQKLYQHMAKSSTSLL 90 (138)
T ss_pred HHHHHHHHHhhHhhhC
Confidence 3334444555555443
No 193
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=61.53 E-value=67 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 001298 455 TNEQYSTVCQIKKSSYALL 473 (1105)
Q Consensus 455 ~~e~~~~l~~I~~ss~~L~ 473 (1105)
....++....+.+++.+|+
T Consensus 63 ~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 63 TQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445555666777777654
No 194
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=61.49 E-value=1.4e+02 Score=33.37 Aligned_cols=96 Identities=19% Similarity=0.112 Sum_probs=61.1
Q ss_pred EEEeC-CHHHHHHHHHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc---CCCC
Q 001298 953 LLAED-TPLIQIVACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMP 1027 (1105)
Q Consensus 953 LIvdD-~~~~~~~l~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD---i~MP 1027 (1105)
|++.+ ++.....+......+|.++ ..+.|.+|+..+.+ ..+|+|-.. ..--
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~------------------------~gadiIgin~rdl~~~ 194 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK------------------------LGAPLIGINNRNLKTF 194 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH------------------------cCCCEEEECCCCcccc
Confidence 44444 3333333444445678775 45788888866553 146666542 1112
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.-| ++.+.++.+..+ ...|+|+.++-.+.++..+++++|+|+++.
T Consensus 195 ~~d-~~~~~~l~~~~p----~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 195 EVD-LETTERLAPLIP----SDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred cCC-HHHHHHHHHhCC----CCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 223 677777776432 136899999999999999999999999765
No 195
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=60.86 E-value=66 Score=42.76 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=82.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
+..++++++....+..+...++..|..+..+.+..+....+. ..++
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~----------------------------------~~~~ 846 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS----------------------------------KNHI 846 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------hCCC
Confidence 457888999999999999999999987776665544433321 1245
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
.++++|..++++++......++... ....+++.........+....+.|.+.++.||+....+...+....
T Consensus 847 DlVl~D~~mP~mdG~el~~~ir~~~----~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 847 DIVLTDVNMPNMDGYRLTQRLRQLG----LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC----CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 7899999999998866555554321 1223334444444555667778899999999999999998887654
No 196
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=60.69 E-value=53 Score=43.65 Aligned_cols=121 Identities=11% Similarity=0.111 Sum_probs=81.4
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.++....+..+...+...|..+..+.+.......+. ..++
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 747 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH----------------------------------QHAF 747 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH----------------------------------CCCC
Confidence 345778888888888999999998887766655444333221 1346
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++++|..++++++......++........ ..+++..............+.|.+.++.||+....+...+.....
T Consensus 748 dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~-~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 748 DLALLDINLPDGDGVTLLQQLRAIYGAKNE-VKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CEEEECCCCCCCCHHHHHHHHHhCccccCC-CeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 789999999999876555555432221111 223333344444555667778999999999999999998877654
No 197
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=60.04 E-value=90 Score=33.73 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=42.2
Q ss_pred CccEEEEcCC-------CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1016 RFDLILMDCQ-------MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1016 ~~DlIlmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.+|+|..... .+...+++++++||+.. ++||++..+-.+.++..+++++|+|.++.=
T Consensus 139 G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~------~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 139 GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV------GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC------CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 5787754311 12233578899998742 489999888888999999999999998763
No 198
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=59.24 E-value=71 Score=42.22 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
++..+++.++....+..+...+...|+.+..+.........+. ...+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~---------------------------------~~~~ 726 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ---------------------------------NSEP 726 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH---------------------------------cCCC
Confidence 4556888898988888889999888887766554433322111 1235
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+.++++|+.++++++....+.++. ......++ +..............+.|.+.++.||+....+...+.....
T Consensus 727 ~Dlvl~D~~mp~~~G~~~~~~lr~---~~~~~~ii-~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 727 FAAALVDFDLPDYDGITLARQLAQ---QYPSLVLI-GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEE-EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 678999999999988554444432 11222222 22333333344455667888899999999999998877654
No 199
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.02 E-value=85 Score=34.44 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHH
Q 001298 963 IVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEAT 1035 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~ 1035 (1105)
....+.|-+.||.|... .|.--|-++.+- =--.+|=+--|.-.| -+.+
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-------------------------GcaavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-------------------------GCAAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-------------------------T-SEBEEBSSSTTT---SSTHHHH
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-------------------------CCCEEEecccccccCcCCCCHHHH
Confidence 34556777889998764 444444444321 123677788888776 4567
Q ss_pred HHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHH
Q 001298 1036 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTIL 1090 (1105)
Q Consensus 1036 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~ 1090 (1105)
+.|++. .++|||+=.+-..+++...++|.|+|+.|. |--++-.|..+.+
T Consensus 168 ~~i~~~------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 168 RIIIER------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFK 221 (247)
T ss_dssp HHHHHH------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred HHHHHh------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHH
Confidence 778764 259999999999999999999999999997 3345555555543
No 200
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=57.89 E-value=96 Score=33.66 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=44.1
Q ss_pred Ccc-EEEEcCCCCCCC-H--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFD-LILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~md-G--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..| ++++|+.--++. | +++++++++. .++||++-.+-.+.++..++++.|+|+++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~------~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA------VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 466 787888654332 2 7888888864 358999999999999999999999999876
No 201
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=57.69 E-value=44 Score=35.73 Aligned_cols=98 Identities=8% Similarity=0.084 Sum_probs=62.2
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 951 RILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 951 ~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
+|++. |.+..-...+..+|+..||+|.... ..++.++.+.+ ..||+|.+-
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----------------------~~pd~v~lS 142 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----------------------EKPLMLTGS 142 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEEEc
Confidence 55554 4566667788889999999998654 34455555543 479999999
Q ss_pred CCCCCCCH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1024 CQMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1024 i~MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+.|+..-. -++.+++|+... ..+++|+ +-+..... .-|.+.|+|.|-.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~---~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY---RDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC---CCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 98865432 344556665311 1235544 44544433 3467889999864
No 202
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.75 E-value=1.4e+02 Score=34.59 Aligned_cols=98 Identities=14% Similarity=0.032 Sum_probs=62.4
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhcC-CEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 951 RILLAED----TPLIQIVACKILEKVG-ATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 951 ~ILIvdD----~~~~~~~l~~~L~~~g-~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
.++.+|- ....++.++.+=++.. ..|.. +.+.++|..+.+. .+|.|..-
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a------------------------Gad~i~vg 168 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA------------------------GADATKVG 168 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc------------------------CcCEEEEC
Confidence 6777753 2333444444433433 33333 6788888887753 46776532
Q ss_pred C-------C---CC-CCC--HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1024 C-------Q---MP-KMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1024 i-------~---MP-~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
. . .. ... ++.+++.+++. .++|||+--+-....|..+|+.+|||.+..=
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAKA------ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 1 1 11 112 56667777753 2589999999999999999999999988753
No 203
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.54 E-value=2.5e+02 Score=29.12 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=106.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHH
Q 001298 426 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505 (1105)
Q Consensus 426 Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~ 505 (1105)
+.+.+.||+=.|..+|..-+|+|.+.. -+ .+.++.|+.++..+. ..|.|.|+--|.-----..||-.+. +.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~-ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgea-ek 88 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGG-AD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEA-EK 88 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCC-cc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhH-HH
Confidence 567799999999999999999986443 22 234556777776654 4678988876654333345665443 33
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCcccccc
Q 001298 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKF 585 (1105)
Q Consensus 506 v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (1105)
+...| .+.+| -++..+.... ...+++. ..+.||+-=|--.-|.|+..+.. .++..
T Consensus 89 ~A~~~--~a~ek-pe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vt-le~~e--------------- 143 (214)
T COG5385 89 AAQDF--FANEK-PELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVT-LENPE--------------- 143 (214)
T ss_pred HHHHH--HhccC-CcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEE-eecCC---------------
Confidence 33222 12233 4555544322 2233444 45678887777677877643321 11110
Q ss_pred chhhhhhhhhhhccccccccCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcC
Q 001298 586 GRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMG 663 (1105)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~--GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~g 663 (1105)
.. -+|+|.-.|+ -.|++.++-+ .+.+. ...-++.-.-=+..--|++.-|
T Consensus 144 ---------------------~d--~rfsi~akG~m~Rvppk~lel~-----~G~~~-eE~vdahsVQpyYt~lLa~eAg 194 (214)
T COG5385 144 ---------------------TD--ARFSIIAKGRMMRVPPKFLELH-----SGEPP-EEAVDAHSVQPYYTLLLAEEAG 194 (214)
T ss_pred ---------------------cC--ceEEEEecCccccCCHHHHhhh-----cCCCc-cccCCCccccHHHHHHHHHHcC
Confidence 01 2466666665 3466655432 12111 1112344455566778899999
Q ss_pred CEEEEEEeCC
Q 001298 664 GEIKVVKKNS 673 (1105)
Q Consensus 664 G~I~v~S~~g 673 (1105)
++|.|+...+
T Consensus 195 m~I~v~~~~e 204 (214)
T COG5385 195 MTISVHATAE 204 (214)
T ss_pred CeEEEEeccc
Confidence 9999987654
No 204
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=55.00 E-value=1.4e+02 Score=32.14 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=35.9
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.+++.++++|+.. ++||++..+-.+.++..+++++|+|.++.-
T Consensus 164 ~~~~~l~~i~~~~------~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 164 PDFELLKELRKAL------GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCHHHHHHHHHhc------CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 3578899998642 489999888888999999999999998863
No 205
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=53.00 E-value=2e+02 Score=26.90 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 001298 417 EASNNYKSQFLANMSH 432 (1105)
Q Consensus 417 e~~~~~Ks~Fla~~SH 432 (1105)
.+..+.|..|+.+|-.
T Consensus 64 rES~~Er~K~~~s~~~ 79 (121)
T PF10669_consen 64 RESKRERQKFIWSMNK 79 (121)
T ss_pred hhhHHHHHhHHhhhhH
Confidence 3444567778877754
No 206
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.66 E-value=49 Score=33.43 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=46.0
Q ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEEC----CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 946 ILEGLRILLAEDTPLIQIVACKILEKVGATVSVVP----DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 946 ~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~----ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
.++|.+|+|+.......+-+..+|.+.|++|..+. |.++++. .-|+|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----------------------------~ADIVv 76 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----------------------------DADVVV 76 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----------------------------hCCEEE
Confidence 46789999999999999999999999999999998 5544332 479999
Q ss_pred EcCCCCC
Q 001298 1022 MDCQMPK 1028 (1105)
Q Consensus 1022 mDi~MP~ 1028 (1105)
.-..-|.
T Consensus 77 sAtg~~~ 83 (140)
T cd05212 77 VGSPKPE 83 (140)
T ss_pred EecCCCC
Confidence 9887774
No 207
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=50.84 E-value=1.7e+02 Score=32.77 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=53.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHH
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRL 1092 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l 1092 (1105)
.||.|+.|++=-.+|--++...||..... .-.|+|=+. ..+.....+++++|+++.+.-=+ +.++....++.+
T Consensus 40 G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~lVRvp-~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 40 GFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPVVRVP-TNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcEEECC-CCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 69999999999999988888888875432 224555554 45678899999999999988555 455555555443
No 208
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=50.27 E-value=55 Score=34.58 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=46.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCE---EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGAT---VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~---v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+|..||-++.....++.-+++.|.. .....|...++..... ...+||+|++| -
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------------------~~~~fDiIflD--P 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------------------KGEKFDIIFLD--P 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------------------CTS-EEEEEE----
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------------------cCCCceEEEEC--C
Confidence 48999999999999999999998853 4556777777766532 13589999999 3
Q ss_pred CCCCH---HHHHHHHH
Q 001298 1027 PKMDG---YEATIEIR 1039 (1105)
Q Consensus 1027 P~mdG---~e~~~~IR 1039 (1105)
|-..+ .+++..|.
T Consensus 123 PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 123 PYAKGLYYEELLELLA 138 (183)
T ss_dssp STTSCHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHH
Confidence 55554 34666665
No 209
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=49.99 E-value=58 Score=36.79 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=52.7
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+|+.. ++ .+|.
T Consensus 191 IeVEv~tleea~ea~~~------------------------GaDiI~lD-n~~~e~l~~~v~~l~~~~-----~~-~~le 239 (277)
T TIGR01334 191 ITVEADTIEQALTVLQA------------------------SPDILQLD-KFTPQQLHHLHERLKFFD-----HI-PTLA 239 (277)
T ss_pred EEEECCCHHHHHHHHHc------------------------CcCEEEEC-CCCHHHHHHHHHHHhccC-----CC-EEEE
Confidence 44667899999998853 69999999 455555556666665322 22 3688
Q ss_pred EeccCCHHHHHHHHhcCCCEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
.++.-..+......+.|+|-+.
T Consensus 240 asGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 240 AAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EECCCCHHHHHHHHhcCCCEEE
Confidence 8899999999999999998754
No 210
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=49.89 E-value=1.5e+02 Score=32.94 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhcCCEEEEEC--CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH---
Q 001298 957 DTPLIQIVACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG--- 1031 (1105)
Q Consensus 957 D~~~~~~~l~~~L~~~g~~v~~a~--ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG--- 1031 (1105)
|+....+ ..+.|-+.||.|.... |..-|-++.+. =-..+|=+--|.-.|
T Consensus 122 D~~etl~-Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-------------------------Gc~aVMPlgsPIGSg~Gl 175 (267)
T CHL00162 122 DPIGTLK-AAEFLVKKGFTVLPYINADPMLAKHLEDI-------------------------GCATVMPLGSPIGSGQGL 175 (267)
T ss_pred ChHHHHH-HHHHHHHCCCEEeecCCCCHHHHHHHHHc-------------------------CCeEEeeccCcccCCCCC
Confidence 3334444 4455667899997654 44444333321 134777777887765
Q ss_pred --HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHh
Q 001298 1032 --YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1032 --~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~ 1093 (1105)
-..++.|++. .++|||.=.+-...+|..++++.|+|+.+. |--++.+|..+++...
T Consensus 176 ~n~~~l~~i~e~------~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 176 QNLLNLQIIIEN------AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred CCHHHHHHHHHc------CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 3567777763 359999999999999999999999999864 6678888887776543
No 211
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.92 E-value=15 Score=48.82 Aligned_cols=80 Identities=18% Similarity=0.359 Sum_probs=63.4
Q ss_pred CCCcceeeeeeecccC-cccccccccccCCCCC--------CCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcc
Q 001298 199 PDGVASWHVAVSKFTN-SPLLSAALPVWDPTTS--------NKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEG 269 (1105)
Q Consensus 199 ~~~~~~w~~~~~~~~~-~~~~~~~~pv~~~~~~--------~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G 269 (1105)
.+-.++|+.++....+ .+++....||+|.... +..++||+|+++.+..+.++.-..+.+..|+.|+.+..|
T Consensus 422 ~~~pv~wt~vy~~~~~~~~i~~~~~pv~~~~~~~~~~~~~~~~~~lgV~~~dvpv~ei~k~~~~~~lg~~gy~f~vd~nG 501 (1104)
T KOG2353|consen 422 EAHPVTWTQVYTDLLYLGLIVTVSLPVFNRTQRHVRVQNTSNQLLLGVVGTDVPVKEIKKLTPPYKLGLNGYFFAVDNNG 501 (1104)
T ss_pred ccCCceeeehhhhhccCcceEecccCcccchhhhhhhcccccceEEEEEecccCHHHHhhcCCccccCCCceEEEecCCc
Confidence 4456789888766654 4467777899886443 234789999999999999999999999999999999999
Q ss_pred eEEEecCCC
Q 001298 270 YLLATSTNA 278 (1105)
Q Consensus 270 ~ll~~s~~~ 278 (1105)
++++++.-.
T Consensus 502 ~vl~HP~l~ 510 (1104)
T KOG2353|consen 502 YVLLHPQLR 510 (1104)
T ss_pred cEEecCccc
Confidence 999877544
No 212
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.81 E-value=79 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=45.4
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1017 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1017 ~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-.+|++|+..-+| .| +++++++++. .++||++--+-.+.++..++++.|++..+.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA------TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4699999987654 33 6777888753 358999999999999999999999999886
No 213
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.56 E-value=51 Score=36.87 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=45.2
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEecc------CCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+.+++++++|+.. .++|+|+||=. ..+....+|.++|+|+.|.=.+.+++....+..+-+
T Consensus 75 ~~~~~~~~~r~~~-----~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIREKD-----PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4688999999432 35899999833 445568899999999999988888877766655543
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.35 E-value=1.5e+02 Score=35.69 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCCEEEEEeCCHHH---HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 948 EGLRILLAEDTPLI---QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~---~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.+.+|.+|+-++.- ...+...-+..|..+..+.+..+....+... ..+|+||.|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~----------------------~~~DlVlIDt 307 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL----------------------RDCDVILIDT 307 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh----------------------CCCCEEEEeC
Confidence 35789999988741 2334444455778888888877766666532 3699999996
Q ss_pred CCCCCCHH--HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHH----hcCCCEEEEcCCCH
Q 001298 1025 QMPKMDGY--EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1082 (1105)
Q Consensus 1025 ~MP~mdG~--e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~~ 1082 (1105)
|++... ..+..+++.......+.-..+++++.....+..+.. ..|.+.+|.--++.
T Consensus 308 --~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDe 369 (424)
T PRK05703 308 --AGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDE 369 (424)
T ss_pred --CCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccc
Confidence 333322 223333332111111223477788877776665443 34777775544544
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=48.31 E-value=20 Score=34.66 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=27.8
Q ss_pred CCCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccch
Q 001298 199 PDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALS 245 (1105)
Q Consensus 199 ~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~ 245 (1105)
..|++.++. ...+..+.+.+..||+|. +|+++|+|.|...+.
T Consensus 73 L~G~~~~~~--~~~~~~~~~~~~~PV~d~---~g~viG~V~VG~~~~ 114 (116)
T PF14827_consen 73 LQGKSYTSV--SQGTGGPSLRAFAPVYDS---DGKVIGVVSVGVSLD 114 (116)
T ss_dssp CCT--EEEE--EECTTCEEEEEEEEEE-T---TS-EEEEEEEEEEHH
T ss_pred hcCCceEEe--eecCCceEEEEEEeeECC---CCcEEEEEEEEEEcC
Confidence 355544433 344568899999999986 899999998876553
No 216
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=48.08 E-value=26 Score=42.62 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.7
Q ss_pred EEEEeCCCCCChhhHhhhhcccccC
Q 001298 613 FEVDDTGCGIDQSKWETVFESFEQG 637 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l~~IFe~F~q~ 637 (1105)
+.|.|+|-||-.++++-+.++|...
T Consensus 59 lQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 59 LQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEecCCCccchhhhHHHHHHhhhh
Confidence 6789999999999999999999753
No 217
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=47.48 E-value=2.6e+02 Score=30.08 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+++.++++++..+ ..+|||+..+-...++..+++++|+|+++.
T Consensus 158 ~~~~~~~l~~~~~----~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 158 DLNTTERLAPLIP----KDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CHHHHHHHHHhCC----CCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 3688888886421 248999999999999999999999999975
No 218
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=47.38 E-value=85 Score=34.53 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.5
Q ss_pred CCccEEEEcCCCCCC--CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1015 PRFDLILMDCQMPKM--DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1015 ~~~DlIlmDi~MP~m--dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
...|.|-.|.+.|+- --++++++|++.. ..+|||+--+-.+.++..+++++|||....
T Consensus 160 aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 160 DGFDGIHVDAMYPGKPYADMDLLKILSEEF-----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cCCCEEEEeeCCCCCchhhHHHHHHHHHhc-----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 368988889887763 2378888888632 249999999989999999999999999865
No 219
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.17 E-value=2.4e+02 Score=29.65 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCEEE----EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC-----CCCCCHHH
Q 001298 963 IVACKILEKVGATVS----VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ-----MPKMDGYE 1033 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~----~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~-----MP~mdG~e 1033 (1105)
..+....++.|..+. .+.+..+++..+. ...|.|..... .....+.+
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~------------------------~~~d~v~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK------------------------LGVDIVILHRGIDAQAAGGWWPED 148 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH------------------------CCCCEEEEcCcccccccCCCCCHH
Confidence 334455666777654 4457777776443 25788776421 11245678
Q ss_pred HHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1034 ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1034 ~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.++++++. .++||++.-+- +.+...+++++|+|.++.
T Consensus 149 ~i~~~~~~------~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 149 DLKKVKKL------LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHHHHHhh------cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 88888863 24777765544 588899999999998865
No 220
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.94 E-value=75 Score=33.59 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=53.2
Q ss_pred EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEe
Q 001298 977 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALT 1056 (1105)
Q Consensus 977 ~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalT 1056 (1105)
.-+.+.+|+.++++. .+|+|-++- ++.. |.+.++.+++. .+++|+++.-
T Consensus 102 ~gv~t~~e~~~A~~~------------------------Gad~i~~~p-~~~~-g~~~~~~l~~~-----~~~~p~~a~G 150 (190)
T cd00452 102 PGVATPTEIMQALEL------------------------GADIVKLFP-AEAV-GPAYIKALKGP-----FPQVRFMPTG 150 (190)
T ss_pred CCcCCHHHHHHHHHC------------------------CCCEEEEcC-Cccc-CHHHHHHHHhh-----CCCCeEEEeC
Confidence 346688998888752 689998864 4444 99999999863 2358988877
Q ss_pred ccCCHHHHHHHHhcCCCEEEEc
Q 001298 1057 AHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1057 a~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
+- ..+...+++++|++..-.-
T Consensus 151 GI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 151 GV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CC-CHHHHHHHHHCCCEEEEEc
Confidence 66 7788999999999887654
No 221
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=46.49 E-value=15 Score=46.35 Aligned_cols=50 Identities=32% Similarity=0.470 Sum_probs=29.1
Q ss_pred EEEEEeCCCCCChhhH--------hhhhcccccCC---CCCCCC-CCCccchHHHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKW--------ETVFESFEQGD---PSTTRK-HGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l--------~~IFe~F~q~~---~s~~~~-~~GtGLGLaIvk~LVe~ 661 (1105)
.++|.|+|.|||-+.- +-||.....+. ....+- .|-.|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 3899999999997532 22343221111 111111 23479999998877664
No 222
>PRK11173 two-component response regulator; Provisional
Probab=46.43 E-value=2.5e+02 Score=29.96 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=69.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...++..|..+..+.+.......+. ..++.+
T Consensus 5 ~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----------------------------------~~~~dl 50 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS----------------------------------ENDINL 50 (237)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------------------------------hCCCCE
Confidence 3566666777777778888877766555444333222111 123467
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+.+.++. .. ...+ ++..............+.|.+.++.||+....+...+.....
T Consensus 51 vild~~l~~~~g~~~~~~lr~---~~-~~pi-i~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 51 VIMDINLPGKNGLLLARELRE---QA-NVAL-MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEEcCCCCCCCHHHHHHHHhc---CC-CCCE-EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 888999988876554444432 11 1222 233333333344455678889999999999988877766554
No 223
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=45.91 E-value=1.5e+02 Score=32.49 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCC-H--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1018 DLILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1018 DlIlmDi~MP~md-G--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.++++|+..-++. | ++++++|.+. ..+||++-.+-.+.++..+++++|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~------~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR------ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5999999875543 2 6778888763 358999999999999999999999999875
No 224
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=45.89 E-value=2.9e+02 Score=29.41 Aligned_cols=117 Identities=10% Similarity=0.145 Sum_probs=70.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.......+..+...+...|..+..+.....+...+ ...++.
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------------~~~~~d 51 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL----------------------------------TRESFH 51 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----------------------------------hcCCCC
Confidence 3466677777777777788877776665544433322111 012456
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+++.++..+...++. ......+ .+..............+.|.+.++.||+....+...+.....
T Consensus 52 lvild~~l~~~~g~~~~~~lr~---~~~~~pi-i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 52 LMVLDLMLPGEDGLSICRRLRS---QNNPTPI-IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCE-EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 7888998888876444333332 1111222 223333333444555678888999999999998888777654
No 225
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=45.89 E-value=2.8e+02 Score=29.05 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=67.6
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|.....+.+.......+ ......++
T Consensus 4 iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------------------------------~~~~~dlv 49 (225)
T PRK10529 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA----------------------------------ATRKPDLI 49 (225)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH----------------------------------hcCCCCEE
Confidence 45566666666777777777776554443322211110 11234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++....+.++. .. . ..+++..............+.|.+-++.||+....+...+.....
T Consensus 50 ild~~l~~~~g~~~~~~lr~---~~-~-~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 50 ILDLGLPDGDGIEFIRDLRQ---WS-A-IPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred EEeCCCCCCCHHHHHHHHHc---CC-C-CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 89999998877554444432 11 1 222333333444445566678889999999999988887766554
No 226
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=45.73 E-value=98 Score=33.36 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=43.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
+-+|.-+|-++...+.++..+++.|+ .| ....++.+.+..+.... ...+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-------------------~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-------------------EEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-------------------TTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-------------------CCCceeEEEEccc
Confidence 35899999999999999999999886 34 34577777777664310 1247999999995
No 227
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=45.63 E-value=2.7e+02 Score=29.66 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=67.8
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.......+..+..+++..|..+..+.........+ ....+.++
T Consensus 4 iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~----------------------------------~~~~~dlv 49 (240)
T PRK10701 4 IVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI----------------------------------LREQPDLV 49 (240)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH----------------------------------hhCCCCEE
Confidence 45566666677777788877776655544333222111 01234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+.+.++. .. ...+.++ .............+.|.+.++.||+....+...+.....
T Consensus 50 ild~~l~~~~g~~~~~~ir~---~~-~~pii~l-~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 50 LLDIMLPGKDGMTICRDLRP---KW-QGPIVLL-TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred EEeCCCCCCCHHHHHHHHHh---cC-CCCEEEE-ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 89999998877554444432 11 1222222 222333334456678888999999999988887776554
No 228
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.32 E-value=3e+02 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001298 465 IKKSSYALLRLLNRILD 481 (1105)
Q Consensus 465 I~~ss~~L~~LIndiLd 481 (1105)
..++++-+..|.+|--+
T Consensus 61 Fa~sAeLlktl~~dYqk 77 (138)
T COG3105 61 FARSAELLKTLAQDYQK 77 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 229
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=44.07 E-value=1.7e+02 Score=37.85 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=78.5
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
++..+++.++....+..+...++..|..+..+.........+. ..+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~----------------------------------~~~ 569 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD----------------------------------PDE 569 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh----------------------------------cCC
Confidence 3456888899999999999999988877766655443332211 134
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++++|+.++++++......++...... ......+...... ....+....|.+.++.||+....+...+.....
T Consensus 570 ~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~-~~~~ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 570 YDLVLLDIQLPDMTGLDIARELRERYPRE-DLPPLVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccccC-CCCcEEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 57889999999998865555444322111 1112222222222 234456678899999999999999998877654
No 230
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=43.59 E-value=1.9e+02 Score=32.76 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCE------EEEcCCCHHHHHHHHHHHhhcC
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNA------YLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~------yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++.+++|++. .++|||+.-+-.+.++..+++++|||. ++.+|.-...+...+.++++..
T Consensus 223 l~~v~~i~~~------~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM------VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3667777753 248999999999999999999999986 6778877777777777776543
No 231
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=43.41 E-value=2.8e+02 Score=31.29 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=53.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
.||.|+.|++=-..|--++...||..... .-.|+|=+ ...+.....++|++|+++.+.-=++-.+=.+.+-+..+
T Consensus 39 GfD~v~iD~EHg~~~~~~l~~~i~a~~~~---g~~~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 39 GYDWLLIDGEHAPNTIQDLYHQLQAIAPY---ASQPVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred CCCEEEEccccCCCCHHHHHHHHHHHHhc---CCCeEEEC-CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 59999999999988888888888876432 22455555 45567888999999999999976754444444444443
No 232
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=43.31 E-value=3.4e+02 Score=28.20 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=67.2
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+..++...+.....+.........+. ..+..++
T Consensus 5 ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~d~v 50 (226)
T TIGR02154 5 ILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN----------------------------------ERGPDLI 50 (226)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH----------------------------------hcCCCEE
Confidence 556666666677777777766655543333222221110 1234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+.+.++..... ... .+.+..............+.|...++.||+....+...+..+..
T Consensus 51 i~d~~~~~~~g~~~~~~l~~~~~~-~~~-~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 51 LLDWMLPGTSGIELCRRLRRRPET-RAI-PIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred EEECCCCCCcHHHHHHHHHccccC-CCC-CEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 889988888764444333321111 111 22223333333444556678888999999999998888877654
No 233
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=43.00 E-value=1.9e+02 Score=32.17 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=53.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCC-HHHHHHHHHH
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID-SERMVSTILR 1091 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~-~~~L~~~I~~ 1091 (1105)
.||.|+.|++=-.+|--++...||..... .-.|+|=+ ...+.....+++++|+++.+.-=++ .++....+..
T Consensus 33 G~D~v~iD~EHg~~~~~~~~~~~~a~~~~---g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 33 GFDWLLLDGEHAPNDVLTFIPQLMALKGS---ASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred CCCEEEEecccCCCCHHHHHHHHHHHhhc---CCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 69999999999999988888888875432 22455555 4557788999999999999885554 4555554443
No 234
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=42.37 E-value=97 Score=33.64 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=44.4
Q ss_pred Ccc-EEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEE
Q 001298 1016 RFD-LILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT 1077 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~ 1077 (1105)
.++ ++++|+..-++ .| +++++++++. ..+|||+-.+-.+.++..++++.| +++.+.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~------~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA------VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 455 89998865433 34 7888888864 248999999999999999999998 999885
No 235
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=42.29 E-value=3.6e+02 Score=28.22 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|..+..+.........+. ...+.++
T Consensus 3 iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~----------------------------------~~~~dlv 48 (223)
T PRK10816 3 VLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN----------------------------------EHLPDIA 48 (223)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------hCCCCEE
Confidence 345556666666777777777765554443332221110 1234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++......++. ......+ .+..............+.|.+.++.||+....+...+.....
T Consensus 49 ild~~l~~~~g~~l~~~lr~---~~~~~pi-i~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 49 IVDLGLPDEDGLSLIRRWRS---NDVSLPI-LVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred EEECCCCCCCHHHHHHHHHh---cCCCCCE-EEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 88999988876444333332 1111222 223333333444556678888999999999988887776654
No 236
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=42.16 E-value=90 Score=35.17 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=45.7
Q ss_pred CHHHHHHHHHccccccCCCCcceE--EEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.|+++++++++. ..+||| +..+-..+++..++++.|+|.++. +.-++.+....+...++..
T Consensus 181 ~d~elLk~l~~~------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 181 APYELVKETAKL------GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCHHHHHHHHHh------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 478888888863 248997 887777999999999999999864 4345666666666655543
No 237
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=41.94 E-value=4.5e+02 Score=27.81 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHHHHHHHHHHHhcCC
Q 001298 439 AAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDMFSVQCSNHN 518 (1105)
Q Consensus 439 ~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~ 518 (1105)
.+|...+|+|.++.. ++....+..|.+++..... -|.|-|+--|.--- ...++..+.-+ +++ .......
T Consensus 2 GAI~NGLELL~~~~~--~~~~~~~~LI~~Sa~~A~a----Rl~F~RlAFGaag~-~~~i~~~e~~~-~~~---~~~~~~r 70 (182)
T PF10090_consen 2 GAINNGLELLDDEGD--PEMRPAMELIRESARNASA----RLRFFRLAFGAAGS-GQQIDLGEARS-VLR---GYFAGGR 70 (182)
T ss_pred cchhhhHHHHcCCCC--ccchHHHHHHHHHHHHHHH----HHHHHHHHcCCCCC-CCCCCHHHHHH-HHH---HHHhCCc
Confidence 467888998865443 2333367778887776654 34566666555433 45677655433 332 2334445
Q ss_pred cEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhh
Q 001298 519 VETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQA 597 (1105)
Q Consensus 519 i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1105)
+++...++... .+ ...-+++.||+-=|...-+.|+ |.|....
T Consensus 71 ~~l~W~~~~~~-----~~-k~~vklllnl~l~a~~alprGG~i~V~~~~------------------------------- 113 (182)
T PF10090_consen 71 ITLDWQVERDL-----LP-KPEVKLLLNLLLCAEDALPRGGEITVSIEG------------------------------- 113 (182)
T ss_pred eEEEccCcccc-----CC-HHHHHHHHHHHHHHHhhcCCCCEEEEEEec-------------------------------
Confidence 77776655441 12 2344889999998888888764 5553211
Q ss_pred ccccccccCCceEEEEEEEeCCC--CCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001298 598 NNAMNFREDNKLALCFEVDDTGC--GIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671 (1105)
Q Consensus 598 ~~~~~~~~~~~~~l~~~V~DtG~--GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~ 671 (1105)
..+. ..|+|.=+|. -++++.+.-+-..-. .........=-+....+++..|++|.++..
T Consensus 114 -------~~~~--~~~~v~a~G~~~~~~~~~~~~L~g~~~------~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 114 -------SEGD--GGWRVRAEGPRARLDPDLWAALAGEDP------EEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred -------cCCC--ceEEEEEeccccCCCHHHHHHhcCCCC------CCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 1112 2356666666 456665554422110 111223344567888999999999999754
No 238
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.49 E-value=83 Score=35.14 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=43.8
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCC------HHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
+.++.+++||+.. ..+|++.|+=..- +....+|.++|+|..+.-....++....+..+-
T Consensus 73 ~~~~~v~~ir~~~-----~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKH-----PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 4688899998631 2478888876554 566788999999999998888877766555543
No 239
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=41.28 E-value=2.2e+02 Score=32.74 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC---CC--CCCHHHHHHHH
Q 001298 965 ACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---MP--KMDGYEATIEI 1038 (1105)
Q Consensus 965 l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~---MP--~mdG~e~~~~I 1038 (1105)
+...|+..|..|. .+.+.++|..+.+. ..|.|+..-. .. ...-+++++++
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~Ivv~g~eagGh~g~~~~~~ll~~v 156 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA------------------------GADAVIAEGMESGGHIGELTTMALVPQV 156 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc------------------------CCCEEEEECcccCCCCCCCcHHHHHHHH
Confidence 4456666787654 46788887666542 5888887332 21 12247888888
Q ss_pred HccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1039 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++. .++|||+--+-.+.++..+++..|+|+...
T Consensus 157 ~~~------~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 157 VDA------VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred HHH------hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 863 248999999999999999999999998765
No 240
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.27 E-value=1.1e+02 Score=34.94 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=49.9
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
-.+.+.+-+||.+++.. ..|+|++| +|+.-+=-++.+.+|+.. ++ ..+.
T Consensus 202 IeVEv~tl~ea~eal~~------------------------gaDiI~LD-nm~~e~vk~av~~~~~~~-----~~-v~ie 250 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE------------------------GAELVLLD-NFPVWQTQEAVQRRDARA-----PT-VLLE 250 (289)
T ss_pred EEEEcCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHHhccC-----CC-EEEE
Confidence 45678899999999853 68999999 444322233444444321 23 3677
Q ss_pred EeccCCHHHHHHHHhcCCCEEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.++.-..+......+.|+|.+-+
T Consensus 251 aSGGI~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 251 SSGGLTLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EECCCCHHHHHHHHhcCCCEEEe
Confidence 78888899999999999987653
No 241
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=41.11 E-value=1.8e+02 Score=30.15 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=40.9
Q ss_pred CccEEEEcCCCCC--------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1016 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.+|+|+.+.--|. -.|.+..+++++. .++||++..+-. .+...+++++|+|.+..=
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL------VEIPVVAIGGIT-PENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 5899987644332 3467888888764 348999987764 678889999999987653
No 242
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.64 E-value=2.9e+02 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=32.5
Q ss_pred cceEEEeccCCHHHHHHHHhcCCCEEEEcCC--CHHHHHHHHHHHhhc
Q 001298 1050 IPIVALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMVSTILRLTKN 1095 (1105)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi--~~~~L~~~I~~l~~~ 1095 (1105)
+-+|+.-.....+...+|+++|.+-|+-||+ +.+++.+.+...-+.
T Consensus 65 ~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 65 AVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 3344444445566777999999999999999 777777666554443
No 243
>PLN02591 tryptophan synthase
Probab=40.40 E-value=84 Score=34.99 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=45.0
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEecc------CCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+.++.++++|+. .++|+|+||=. ..+....+|.++|+|+.|.-.+.+++....+..+-+
T Consensus 65 ~~~~~~~~~r~~------~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ------LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 468999999942 34899888853 334557789999999999999999888776665543
No 244
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.40 E-value=2.7e+02 Score=33.52 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 948 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 948 ~g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.|.+|++++-|+. ....+....+..|..+..+.+..++.+.+.. ..+|+||.|.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-----------------------~~~D~VLIDT 307 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-----------------------DGSELILIDT 307 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-----------------------CCCCEEEEeC
Confidence 3568999988762 1223444445557666666555555555532 3699999997
Q ss_pred CCCCCC--HHHHHHHHHcccccc--CCCCcceEEEeccCCHHHHHHHHh----cCCCEEEEcCCC
Q 001298 1025 QMPKMD--GYEATIEIRKSESEH--GARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1081 (1105)
Q Consensus 1025 ~MP~md--G~e~~~~IR~~~~~~--~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KPi~ 1081 (1105)
|+.. --+.++.+++..... ..+.-.+++|.|....++.....+ .|.+..|.--+|
T Consensus 308 --aGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 308 --AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred --CCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 3321 123333333321110 112346788888877766665544 577777665454
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.98 E-value=3.1e+02 Score=32.85 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 948 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 948 ~g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.|.+|++++-|+. ....++..-+..|+.+..+.+..+..+.+.... ....+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------------------~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------------------hccCCCEEEEeC
Confidence 3568888887754 334455555567888888888776666654321 012599999996
Q ss_pred CCCCCCH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHH---HHH-hcCCCEEEEcCCCH
Q 001298 1025 QMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEK---KCL-GVGMNAYLTKPIDS 1082 (1105)
Q Consensus 1025 ~MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~---~~l-~aG~d~yL~KPi~~ 1082 (1105)
- +.+- .+.++++++..... .++-.+++++|.....+.. +.+ ..|.+.+|.--+|-
T Consensus 329 a--GRs~kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 329 A--GKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred c--cccCcCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 3 3221 33344444432211 1333456677765554433 332 45888887655553
No 246
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.80 E-value=77 Score=36.70 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCCCH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE
Q 001298 1017 FDLILMDCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1017 ~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
+|+|.+|+.-|..+. .|++++||+.. +++|||+=.. .+.++...+.++|+|...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~-----p~~~vi~g~V-~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHL-----PETFVIAGNV-GTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhC-----CCCeEEEEec-CCHHHHHHHHHcCcCEEE
Confidence 599999999976553 67788888742 4577777322 267788899999999976
No 247
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.67 E-value=2.9e+02 Score=30.49 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCEEEEECCHH---HHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC------HH
Q 001298 962 QIVACKILEKVGATVSVVPDGL---QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD------GY 1032 (1105)
Q Consensus 962 ~~~l~~~L~~~g~~v~~a~ng~---eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md------G~ 1032 (1105)
...+...+++.|..+..+-+.. +.++.+.. ....+++| -.+|+-. -.
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-----------------------~~~~~l~m-sv~~~~g~~~~~~~~ 173 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-----------------------LSPLFIYY-GLRPATGVPLPVSVE 173 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-----------------------hCCCEEEE-EeCCCCCCCchHHHH
Confidence 3456677788898877665553 34443322 24667777 4566632 24
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcC
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1079 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1079 (1105)
+.++++|+... ..||++=.+-...++..++.++|+|.++.--
T Consensus 174 ~~i~~lr~~~~-----~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 174 RNIKRVRNLVG-----NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHHhcC-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 56777776532 3566544444478888899999999999864
No 248
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.60 E-value=1.8e+02 Score=27.08 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEE--CCHHH-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQ-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a--~ng~e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
+||||-..+.+...++..+++.|++.... .++.+ ....+... -...|+|++=...
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~---------------------i~~aD~VIv~t~~- 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK---------------------IKKADLVIVFTDY- 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh---------------------cCCCCEEEEEeCC-
Confidence 48999998888899999999999998888 22222 21223221 1357888653322
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHH
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL 1068 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l 1068 (1105)
-+-.++..+++.... .++|++..-..+- ....+++
T Consensus 59 --vsH~~~~~vk~~akk---~~ip~~~~~~~~~-~~l~~~l 93 (97)
T PF10087_consen 59 --VSHNAMWKVKKAAKK---YGIPIIYSRSRGV-SSLERAL 93 (97)
T ss_pred --cChHHHHHHHHHHHH---cCCcEEEECCCCH-HHHHHHH
Confidence 345667777765543 4589988764443 3444444
No 249
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=39.46 E-value=3.8e+02 Score=28.16 Aligned_cols=117 Identities=12% Similarity=0.154 Sum_probs=67.1
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|.....+.........+. .....++
T Consensus 5 Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 50 (229)
T PRK10161 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN----------------------------------EPWPDLI 50 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------ccCCCEE
Confidence 556666666677777777777766554443332222110 1234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+.+.++......++..... ....+.+ ..............+.|.+.++.||+....+...+.....
T Consensus 51 ild~~l~~~~g~~~~~~l~~~~~~-~~~pvi~-ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 51 LLDWMLPGGSGIQFIKHLKRESMT-RDIPVVM-LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEeCCCCCCCHHHHHHHHHhcccc-CCCCEEE-EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 889988887764433333321100 1122222 2233333444556678889999999999998888777654
No 250
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=39.15 E-value=2.3e+02 Score=34.95 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=34.0
Q ss_pred cCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1023 DCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1023 Di~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++-.|. +.++..+++.... ..+|||+=-+-....+..+|+.+|||..+.
T Consensus 324 ~~g~p~---~~ai~~~~~~~~~---~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 324 AVGRPQ---ASAVYHVARYARE---RGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred cCCCCh---HHHHHHHHHHHhh---cCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 344454 3444444443222 248999988888899999999999998875
No 251
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=39.01 E-value=3e+02 Score=31.81 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=65.2
Q ss_pred eCCHHHHHHHHHHHHhcCCEE--EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH--
Q 001298 956 EDTPLIQIVACKILEKVGATV--SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-- 1031 (1105)
Q Consensus 956 dD~~~~~~~l~~~L~~~g~~v--~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-- 1031 (1105)
.|.....+..+. |-+.|+.| .++.|..+|-.+..- .+ ..+|=+--|.-.|
T Consensus 181 pd~~~~v~aa~~-L~~~Gf~v~~yc~~d~~~a~~l~~~------------------------g~-~avmPl~~pIGsg~g 234 (326)
T PRK11840 181 PDMVETLKATEI-LVKEGFQVMVYCSDDPIAAKRLEDA------------------------GA-VAVMPLGAPIGSGLG 234 (326)
T ss_pred cCHHHHHHHHHH-HHHCCCEEEEEeCCCHHHHHHHHhc------------------------CC-EEEeeccccccCCCC
Confidence 344444444433 44569988 455666666555431 23 4444433333322
Q ss_pred ---HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHH
Q 001298 1032 ---YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1091 (1105)
Q Consensus 1032 ---~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1091 (1105)
-+.++.+++. ..+|||.=.+-...+|..++++.|+|+.|. |-=++-.|..+.+.
T Consensus 235 v~~p~~i~~~~e~------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~ 296 (326)
T PRK11840 235 IQNPYTIRLIVEG------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKL 296 (326)
T ss_pred CCCHHHHHHHHHc------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHH
Confidence 4566777754 359999989999999999999999999875 55566666666543
No 252
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=38.87 E-value=4.3e+02 Score=27.34 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=44.4
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+++.++......++. ......+ .+..............+.|...++.||+....+...+.....
T Consensus 45 ~d~illd~~~~~~~g~~~~~~l~~---~~~~~pi-i~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 45 YSLVVLDLGLPDEDGLHLLRRWRQ---KKYTLPV-LILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh---cCCCCcE-EEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 467888998888876443333321 1111222 223333333444555667888899999999998887776654
No 253
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=38.81 E-value=1.8e+02 Score=30.50 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=41.1
Q ss_pred CccEEEEcCCCCC--------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPK--------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|+|..+-..|. ..|.+..+.+++.. +.+||+++-+- ..+...++++.|++++..
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-----~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-----IDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-----CCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 6899987655441 24788888887542 24899988666 477888999999998764
No 254
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=38.60 E-value=2.7e+02 Score=33.79 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=62.3
Q ss_pred CCCEEEEEeC---CHHHHHHHHHHHHhc--CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001298 948 EGLRILLAED---TPLIQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020 (1105)
Q Consensus 948 ~g~~ILIvdD---~~~~~~~l~~~L~~~--g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI 1020 (1105)
.|..++.||- +.....-..+.+++. ...|. .+.+.++|..++.. ..|.|
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a------------------------Gad~i 290 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA------------------------GADGL 290 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh------------------------CCCEE
Confidence 3578888887 444433333344433 23333 36777777777753 35555
Q ss_pred E--------------EcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1021 L--------------MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1021 l--------------mDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
- .++-.|. ++++..+++.... ..+|||+=-+-....+..+|+.+||+..+.
T Consensus 291 ~vg~g~G~~~~t~~~~~~g~p~---~~~i~~~~~~~~~---~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 291 RVGIGPGSICTTRIVAGVGVPQ---ITAVYDVAEYAAQ---SGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred EECCCCCcCCccceecCCCccH---HHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3 3333343 3455555543222 348999988889999999999999998875
No 255
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=38.58 E-value=4.2e+02 Score=27.79 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=46.1
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.+.++++|..+++.++..+...++. ...... +.+..............+.|.+.++.||+....+...+.....
T Consensus 44 ~~dlvild~~~~~~~g~~~~~~lr~---~~~~~p-ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 44 DYDLIILDIMLPDVNGWDIVRMLRS---ANKGMP-ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh---cCCCCC-EEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3467888998888876444333332 111122 2233333333445556678889999999999998888776554
No 256
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=38.58 E-value=49 Score=35.08 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=62.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC--CC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ--MP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~--MP 1027 (1105)
++||++|....+---|..+|+.+|++|.+..|....++.++. ..||.|++--- -|
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-----------------------~~pd~iviSPGPG~P 58 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-----------------------LKPDAIVISPGPGTP 58 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-----------------------cCCCEEEEcCCCCCh
Confidence 589999999999999999999999999998887444444432 36899998632 23
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.-.| -....||+. . .++||+++.= ..+.-+...|.+-.-.
T Consensus 59 ~d~G-~~~~~i~~~-~----~~~PiLGVCL----GHQai~~~fGg~V~~a 98 (191)
T COG0512 59 KDAG-ISLELIRRF-A----GRIPILGVCL----GHQAIAEAFGGKVVRA 98 (191)
T ss_pred HHcc-hHHHHHHHh-c----CCCCEEEECc----cHHHHHHHhCCEEEec
Confidence 3223 133445543 1 3589999873 2334455566654433
No 257
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.40 E-value=2.7e+02 Score=26.27 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL--QAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~--eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+.+|.++|.++... ..+...|+.+.. .|+. +.++.+. -...+.|++...-
T Consensus 21 ~~~vvvid~d~~~~----~~~~~~~~~~i~-gd~~~~~~l~~a~-----------------------i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 21 GIDVVVIDRDPERV----EELREEGVEVIY-GDATDPEVLERAG-----------------------IEKADAVVILTDD 72 (116)
T ss_dssp TSEEEEEESSHHHH----HHHHHTTSEEEE-S-TTSHHHHHHTT-----------------------GGCESEEEEESSS
T ss_pred CCEEEEEECCcHHH----HHHHhccccccc-ccchhhhHHhhcC-----------------------ccccCEEEEccCC
Confidence 35788888887663 333445666544 3332 2233221 2367888887654
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+ ..-+.++..+|+.. +..+||+... +.+......++|+|..+.
T Consensus 73 d-~~n~~~~~~~r~~~-----~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 73 D-EENLLIALLARELN-----PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp H-HHHHHHHHHHHHHT-----TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred H-HHHHHHHHHHHHHC-----CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3 34577888888753 3477887664 345566677899998764
No 258
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=37.98 E-value=2.7e+02 Score=29.72 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=74.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+.+.++...-|..+...+...|..+....+.+.+.. . .....| -.
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~---~------------------------------~~~~~p-Gc 51 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLA---A------------------------------APLDRP-GC 51 (202)
T ss_pred eEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHh---h------------------------------ccCCCC-Ce
Confidence 4566777777788888888888877666554333221 1 001112 25
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++.|+.++.+++--+...+.. ......++++-.| .--+.--+..+.|..-++.||+....++..+...+.
T Consensus 52 lllDvrMPg~sGlelq~~L~~---~~~~~PVIfiTGh-gDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 52 LLLDVRMPGMSGLELQDRLAE---RGIRLPVIFLTGH-GDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred EEEecCCCCCchHHHHHHHHh---cCCCCCEEEEeCC-CChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 678999999998766555432 2222333333333 334555667778888899999999999998887654
No 259
>PRK13856 two-component response regulator VirG; Provisional
Probab=37.93 E-value=4.4e+02 Score=28.16 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=65.9
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.......+..+...+...|..+..+.....+...+ ...++.++
T Consensus 4 ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~dlv 49 (241)
T PRK13856 4 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVL----------------------------------ASETVDVV 49 (241)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH----------------------------------hhCCCCEE
Confidence 45566666666777777777776555444333222111 11234688
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeecc-CCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNH-QTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+...++. .. . ..+.+... ...........+.|.+.++.||+....+...+.....
T Consensus 50 i~d~~l~~~~g~~l~~~i~~---~~-~-~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 50 VVDLNLGREDGLEIVRSLAT---KS-D-VPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEeCCCCCCCHHHHHHHHHh---cC-C-CcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 88999988876444333321 11 1 22222322 2222334455678889999999999988887766554
No 260
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.32 E-value=1.2e+02 Score=33.53 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=40.2
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCC------HHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
.+++.++++|+. .++|+++|+-... +....+|.++|+|+.+.-....+++...+..+-
T Consensus 63 ~~~~~~~~vr~~------~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKK------NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhc------CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 357777777753 2478888876443 666778999999999996666666655554443
No 261
>PLN03029 type-a response regulator protein; Provisional
Probab=37.26 E-value=3.7e+02 Score=29.02 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=77.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...++..|..+..+.........+......... .+.+.. ........++.
T Consensus 9 ~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~-----p~~~~~---------~~~~~~~~~~d 74 (222)
T PLN03029 9 FHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSN-----PDTPSV---------SPNSHQEVEVN 74 (222)
T ss_pred ccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccc-----cccccc---------cccccccccCC
Confidence 4577788888888888999988888776666555444433211100000 000000 00011123467
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
++++|..++++++......++...... ...+++...........+..+.|...++.||+....+..+.....
T Consensus 75 lVllD~~mp~~~G~e~l~~ir~~~~~~--~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 75 LIITDYCMPGMTGYDLLKKIKESSSLR--NIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhccccC--CCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 889999999998755444443221111 122233333333344446667888999999999888876655443
No 262
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=37.11 E-value=2.9e+02 Score=26.84 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEC--CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC-HHHHHH
Q 001298 960 LIQIVACKILEKVGATVSVVP--DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-GYEATI 1036 (1105)
Q Consensus 960 ~~~~~l~~~L~~~g~~v~~a~--ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md-G~e~~~ 1036 (1105)
.-...+..+|.+.|+.+.... .-.+.++.+.. ...||+|.+.++-+.+. ..++++
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------~~~pdiv~~S~~~~~~~~~~~~~~ 60 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE----------------------LLKPDVVGISLMTSAIYEALELAK 60 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH----------------------hcCCCEEEEeeccccHHHHHHHHH
Confidence 344577888998898776644 23334444432 14799999999655543 567888
Q ss_pred HHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1037 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
.||+.. ++++||+--.+.+..-..-....++| |+.+=---..+.+.+..+
T Consensus 61 ~ik~~~-----p~~~iv~GG~~~t~~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 61 IAKEVL-----PNVIVVVGGPHATFFPEEILEEPGVD-FVVIGEGEETFLKLLEEL 110 (127)
T ss_pred HHHHHC-----CCCEEEECCcchhhCHHHHhcCCCCC-EEEECCcHHHHHHHHHHH
Confidence 888753 35677765555443222213445665 555432223344444343
No 263
>PLN03237 DNA topoisomerase 2; Provisional
Probab=37.00 E-value=46 Score=45.41 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCChhhH--------hhhhcccccCCCC---CCCC-CCCccchHHHHHHHHHHcCCE
Q 001298 612 CFEVDDTGCGIDQSKW--------ETVFESFEQGDPS---TTRK-HGGTGLGLSIVRTLVNKMGGE 665 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l--------~~IFe~F~q~~~s---~~~~-~~GtGLGLaIvk~LVe~~gG~ 665 (1105)
.|+|.|+|.|||-+.- +-||.....+.+- ..+- .|=.|.|.++|.-+-+.+--+
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEE
Confidence 3899999999997633 2345443332211 1111 234699999988776655433
No 264
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.98 E-value=3.7e+02 Score=29.09 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred CccEEEEcCCCCC-------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1016 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
..|.|+.|-.-+. ...++.++++|+. ..+||++.-+-...++..+++++|+|..+.-
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4788877542111 2457788888863 2489999888777789999999999988764
No 265
>PRK11677 hypothetical protein; Provisional
Probab=36.63 E-value=4.4e+02 Score=26.53 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHH
Q 001298 372 IILISASVCILVIGCICILILTNGVSKEMKLRAELISHLDAR----RKAEASNNYKSQFLANMSHELRTPMAAII-GLLE 446 (1105)
Q Consensus 372 ~~~i~~~~~i~li~~~~~~~l~~~i~~~~~l~~~l~~~l~a~----~~ae~~~~~Ks~Fla~~SHELRTPL~~I~-G~~e 446 (1105)
.+.++++++.+++|+++..+..+...+..++..++.+...+. ++...--..-.+++.+|+-+-|.=-.=+. |..+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~ 83 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSE 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888877666555555544444332221 11111112233567777766666655553 4444
Q ss_pred HH
Q 001298 447 IL 448 (1105)
Q Consensus 447 lL 448 (1105)
+|
T Consensus 84 Ll 85 (134)
T PRK11677 84 LL 85 (134)
T ss_pred Hc
Confidence 43
No 266
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=36.48 E-value=4.2e+02 Score=29.40 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=52.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHh
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLT 1093 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~ 1093 (1105)
.||.|+.|++=-.+|--++...||..... ...|+|=+-+. +..+..+++++|+++.+.-=+ +.++....+..+-
T Consensus 33 g~D~v~iDlEH~~~~~~~~~~~~~a~~~~---g~~~~VRv~~~-~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 33 GFDWLLIDGEHAPNDVRTILSQLQALAPY---PSSPVVRPAIG-DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHhc---CCCcEEECCCC-CHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 69999999999888888888888765321 22455555444 566899999999998876444 5666655554443
No 267
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=36.31 E-value=3.9e+02 Score=28.02 Aligned_cols=113 Identities=9% Similarity=0.150 Sum_probs=66.0
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|.....+.....+... .. ....++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~--------------------------------~~---~~~d~v 48 (232)
T PRK10955 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL--------------------------------LD---DSIDLL 48 (232)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHH--------------------------------hh---cCCCEE
Confidence 4556666666777777777766655443332222111 00 134678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++......++. ... ..+.++ .............+.|.+.++.||+....+...+.....
T Consensus 49 l~d~~~~~~~g~~~~~~l~~---~~~-~~ii~l-t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 49 LLDVMMPKKNGIDTLKELRQ---THQ-TPVIML-TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEeCCCCCCcHHHHHHHHHh---cCC-CcEEEE-ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 88998888876443333332 111 222233 233333334455678888999999999999888877654
No 268
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.10 E-value=1.3e+02 Score=34.23 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
-.+.+.+-+||.++++. .+|+|++| +|+..+=-++.+.+++.. ++ .++.
T Consensus 192 IeVEv~tleqa~ea~~a------------------------gaDiI~LD-n~~~e~l~~av~~~~~~~-----~~-~~le 240 (284)
T PRK06096 192 IVVEADTPKEAIAALRA------------------------QPDVLQLD-KFSPQQATEIAQIAPSLA-----PH-CTLS 240 (284)
T ss_pred EEEECCCHHHHHHHHHc------------------------CCCEEEEC-CCCHHHHHHHHHHhhccC-----CC-eEEE
Confidence 45567899999999863 69999999 454444445555554321 22 4688
Q ss_pred EeccCCHHHHHHHHhcCCCEEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.++.-..+......+.|+|-..+
T Consensus 241 aSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 241 LAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EECCCCHHHHHHHHhcCCCEEEE
Confidence 88999999999999999987543
No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.78 E-value=3.9e+02 Score=31.82 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=64.8
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
+.+|.++.-|.. ....++.+.+.+|..+..+.+..+....+... ..+|+||+|.-
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~----------------------~~~DlVLIDTa 263 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS----------------------KDFDLVLVDTI 263 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh----------------------CCCCEEEEcCC
Confidence 568888887763 22234455555788888888776655555432 46999999974
Q ss_pred --CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHh----cCCCEEEEcCCC
Q 001298 1026 --MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG----VGMNAYLTKPID 1081 (1105)
Q Consensus 1026 --MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~KPi~ 1081 (1105)
+| .|-.. +.++++.......+.-.+++|+|.....+..+.++ .|.+.+|.--+|
T Consensus 264 Gr~~-~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 264 GKSP-KDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCc-cCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 23 23332 33444332211112236788898888777765543 467777654454
No 270
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.26 E-value=1.6e+02 Score=36.28 Aligned_cols=105 Identities=16% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCCEEEEEeCCHHH----HHHHHHHHHhcC--CEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccE
Q 001298 948 EGLRILLAEDTPLI----QIVACKILEKVG--ATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDL 1019 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~----~~~l~~~L~~~g--~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 1019 (1105)
.|..+++||-.+-. .+.++.+=+..+ ..|.. +.+.+.|.+++.. ..|.
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a------------------------GAd~ 308 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA------------------------GADF 308 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc------------------------CCCE
Confidence 35678877744443 333333333343 34444 5677777777752 3455
Q ss_pred E--------------EEcCCCCCCCHHH-HHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1020 I--------------LMDCQMPKMDGYE-ATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1020 I--------------lmDi~MP~mdG~e-~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
| .+++-.|..+-+. +.+..|+.....+ .++|||+=.+--...|..||+.+|||..+.
T Consensus 309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g-~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG-VYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC-CcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 5 4556566555433 3333322211112 348999999999999999999999998875
No 271
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=35.03 E-value=5.6e+02 Score=30.05 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcc-eEEEEECCcceEEEecCC
Q 001298 246 SVGQLMKELVEVHS-GHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 246 ~i~~~l~~l~~~~~-~~iyi~~~~G~ll~~s~~ 277 (1105)
.+...++.+..... .++.+.|.+|.+++.+..
T Consensus 74 ~~~~~l~~l~~~~~i~~i~v~d~~G~vl~~~~~ 106 (407)
T PRK09966 74 AATETLAALGQQGQFSTAEVRDKQQNILASWHY 106 (407)
T ss_pred HHHHHHHHhhcCcceeEEEEECCCCCEEEEeec
Confidence 45566777765544 788899999999987653
No 272
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=34.97 E-value=3.9e+02 Score=25.12 Aligned_cols=115 Identities=14% Similarity=0.219 Sum_probs=70.8
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccch-hhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWH-GLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
...+++.+.....+..+...+...|.....+.+.. .....++.. ..
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~---------------------------------~~ 51 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL---------------------------------PQ 51 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC---------------------------------CC
Confidence 44677788888889999999999997777766553 333322211 02
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhH-HHHHHH
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGK-MIQLLE 851 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~-l~~~l~ 851 (1105)
+.++++|..++.+++....+.++.. .....+ .+..............+.|.+.++.||+.... +...+.
T Consensus 52 ~dlii~D~~mp~~~G~~~~~~l~~~---~~~~pv-v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~ 121 (130)
T COG0784 52 PDLILLDINMPGMDGIELLRRLRAR---GPNIPV-ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALR 121 (130)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CCCCCE-EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHH
Confidence 4578999999988875544444432 111222 33333333332334455788889999987776 555544
No 273
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.78 E-value=1.9e+02 Score=27.63 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=51.6
Q ss_pred eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC-H
Q 001298 956 EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-G 1031 (1105)
Q Consensus 956 dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md-G 1031 (1105)
|-++.....+..+|++.|+++.... .-.+.++.+.+ ..||+|.+.+.+.... .
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-----------------------~~pdiV~iS~~~~~~~~~ 66 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-----------------------EDADVVGLSALSTTHMEA 66 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEEEecchHhHHHH
Confidence 5667777888899999999988764 33344444432 4799999999886643 3
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCH
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMN 1061 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~ 1061 (1105)
++.++.+|+..+ .+++|++=-.+...
T Consensus 67 ~~~~~~~~~~~p----~~~~ivvGG~~~t~ 92 (125)
T cd02065 67 MKLVIEALKELG----IDIPVVVGGAHPTA 92 (125)
T ss_pred HHHHHHHHHhcC----CCCeEEEeCCcCCc
Confidence 555666665422 15777765544443
No 274
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=34.65 E-value=53 Score=36.96 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=45.6
Q ss_pred CHHHHHHHHHccccccCCCCcceE--EEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~ 1094 (1105)
-|+|+++++++. ..+||| +.-+-..+++...+++.|+|.+.. |.-++++...++...+.
T Consensus 184 ~~~elLkei~~~------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKL------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHh------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 578999999874 248998 877888999999999999999864 55566666666655543
No 275
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=34.24 E-value=5.2 Score=51.42 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.7
Q ss_pred EEEEeCCCCCChhhH
Q 001298 613 FEVDDTGCGIDQSKW 627 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l 627 (1105)
++|.|+|.|||-+.-
T Consensus 163 ItV~DnGRGIPvd~h 177 (903)
T PTZ00109 163 VEISDNGRGIPCDVS 177 (903)
T ss_pred EEEEeCCcccccccc
Confidence 899999999997543
No 276
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=33.94 E-value=1.9e+02 Score=37.32 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-----CCCHHHHHH
Q 001298 964 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATI 1036 (1105)
Q Consensus 964 ~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP-----~mdG~e~~~ 1036 (1105)
.....|++.|+.+.. +.+|...+..+.. -++|.|=+|..+= .-....+++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-----------------------l~~d~iKid~~~~~~~~~~~~~~~~~~ 738 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS-----------------------LPVTEIKIDKSFVDRCLTEKRILALLE 738 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh-----------------------CCCCEEEECHHHHhhcccChhHHHHHH
Confidence 344568889998865 5688888887764 3799999997541 112344566
Q ss_pred HHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCC----EEEEcCCCHHHHHHHHHHH
Q 001298 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1037 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KPi~~~~L~~~I~~l 1092 (1105)
.|...... .++.+| .++-.+.+....+.+.|+| .|+.||...++|...|++.
T Consensus 739 ~~~~~~~~---~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 739 AITSIGQS---LNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHH---CCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 66554332 235555 4677888888899999998 4788999999999877654
No 277
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=33.94 E-value=4.9e+02 Score=27.09 Aligned_cols=114 Identities=17% Similarity=0.194 Sum_probs=66.0
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+..++...|..+..+.+.......+ ....+.++
T Consensus 5 iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~dlv 50 (221)
T PRK10766 5 ILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM----------------------------------QNQHVDLI 50 (221)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH----------------------------------hcCCCCEE
Confidence 45555666666667777777776554444333222111 01235678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..++++++..+.+.++.. . ... +.+..............+.|.+-++.||+....+...+.....
T Consensus 51 ild~~l~~~~g~~~~~~lr~~---~-~~~-ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 51 LLDINLPGEDGLMLTRELRSR---S-TVG-IILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred EEeCCCCCCCHHHHHHHHHhC---C-CCC-EEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 889988888765444443321 1 122 2233333333344455678888899999999888877766553
No 278
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=33.75 E-value=1.1e+02 Score=33.45 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=41.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
++.-+|-|+...+.++..+++.|.. +..... -+|++.+.+. ...+||+||+|..=+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------------------~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------------------LDGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------------------cCCCccEEEEeCChhh
Confidence 8999999999999999999999863 434431 3444444321 1358999999986544
No 279
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=35 Score=42.37 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCChhhHhhhh--------ccccc---CCCCCCCCCCCccchHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWETVF--------ESFEQ---GDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IF--------e~F~q---~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
.++|.|||+||.++++..-. ..|.+ .+.....--|-.|+|++=|--+
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 132 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMV 132 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeee
Confidence 47899999999998875422 11211 1111112236789999875433
No 280
>PRK00811 spermidine synthase; Provisional
Probab=33.35 E-value=1.8e+02 Score=32.96 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=46.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC------CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG------ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g------~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
.+|.+||=++...+.++..|...+ .++ ....|+.+.+... ...||+|++
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------------------------~~~yDvIi~ 156 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------------------------ENSFDVIIV 156 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------------------------CCcccEEEE
Confidence 489999999999999999886532 233 3467776644321 247999999
Q ss_pred cCCCCCCCH-----HHHHHHHHcccc
Q 001298 1023 DCQMPKMDG-----YEATIEIRKSES 1043 (1105)
Q Consensus 1023 Di~MP~mdG-----~e~~~~IR~~~~ 1043 (1105)
|+--|..-+ -|+.+.+++.-.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 986664222 355566665433
No 281
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=33.24 E-value=4.4e+02 Score=32.37 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.2
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++++..+++.... ..+|||+=-+-....|..+|+.+|||..+.
T Consensus 317 ~~~~~~~~~~~~~---~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 317 ITAIADAAEAAKK---YGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHhcc---CCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 5566666653222 348999988999999999999999998875
No 282
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=33.11 E-value=5.1e+02 Score=27.66 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=46.2
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..++++++-.+...++. ......+.++..+ ..........+.|...++.||+....+...+..+..
T Consensus 51 pdlvllD~~mp~~~gle~~~~l~~---~~~~~~iivls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 51 PGLILLDNYLPDGRGINLLHELVQ---AHYPGDVVFTTAA-SDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHh---cCCCCCEEEEEcC-CCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHH
Confidence 468899999999887544333322 1111223333222 223344455678899999999999999988877654
No 283
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=33.04 E-value=71 Score=39.89 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
-|.|++.-|+-|+|.... -.|.|.+. -..+.+.|.|+
T Consensus 21 sla~~VeElv~NSiDA~A-t~V~v~V~------------------------------------------~~t~sv~ViDd 57 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA-TCVAVRVN------------------------------------------METFSVQVIDD 57 (1142)
T ss_pred HHHHHHHHHHhhccccCc-eEEEEEec------------------------------------------CceeEEEEEec
Confidence 578999999999998632 23333321 11356899999
Q ss_pred CCCCChhhHhhhhcccccC
Q 001298 619 GCGIDQSKWETVFESFEQG 637 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~ 637 (1105)
|.|+..++++.+=++||..
T Consensus 58 G~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 58 GFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred CCCccHHHHHHHHhhhhhh
Confidence 9999999999999888754
No 284
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.01 E-value=1.3e+02 Score=30.76 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEE---------------EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVS---------------VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETP 1012 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~---------------~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1105)
+++|+||.....+...-+...|+...+.+. ....+. ....+. + ..
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~--------------~-----p~ 91 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLL--------------N-----PC 91 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHH--------------T-----SS
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhc--------------C-----cc
Confidence 568999999999999999999987654322 112221 111111 0 01
Q ss_pred CCCCccEEEEcCCCCCCCH--HHHHHHHHccccccCCCCcceEEEeccC
Q 001298 1013 DTPRFDLILMDCQMPKMDG--YEATIEIRKSESEHGARNIPIVALTAHA 1059 (1105)
Q Consensus 1013 ~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1059 (1105)
....||+|||| +.--+|- +.+.-.|+..... ....+|.+||-.
T Consensus 92 ~~~~yd~II~D-EcH~~Dp~sIA~rg~l~~~~~~---g~~~~i~mTATP 136 (148)
T PF07652_consen 92 RLKNYDVIIMD-ECHFTDPTSIAARGYLRELAES---GEAKVIFMTATP 136 (148)
T ss_dssp CTTS-SEEEEC-TTT--SHHHHHHHHHHHHHHHT---TS-EEEEEESS-
T ss_pred cccCccEEEEe-ccccCCHHHHhhheeHHHhhhc---cCeeEEEEeCCC
Confidence 23579999999 2344564 4344455554332 236789999853
No 285
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=32.97 E-value=3.9e+02 Score=28.84 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCC---CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1018 DLILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1018 DlIlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-++++|+..-++ -.+++++++++. .++||++-.+-.+.++..++++.|+|+.+.
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAA------TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHh------cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 366788754322 127888888863 258999999999999999999999999775
No 286
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.80 E-value=3.5e+02 Score=30.58 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=48.1
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
...+.+-+||.++++. .+|+|.+|- |+ +|.++++-+.... ..+++ +|..
T Consensus 186 ~VEv~tleea~~A~~~------------------------GaDiI~LDn----~~-~e~l~~~v~~~~~-~~~~~-~ieA 234 (273)
T PRK05848 186 EIECESLEEAKNAMNA------------------------GADIVMCDN----MS-VEEIKEVVAYRNA-NYPHV-LLEA 234 (273)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEECC----CC-HHHHHHHHHHhhc-cCCCe-EEEE
Confidence 4568899999999863 689999885 23 3333333332111 12334 5666
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...++.+.|+|.+.+
T Consensus 235 sGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 235 SGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred ECCCCHHHHHHHHHcCCCEEEe
Confidence 7778999999999999998764
No 287
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.73 E-value=1.6e+02 Score=33.54 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=46.7
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
-..+.|.+||.+++.. .+|+|.+|- |...+=-++.+.+|+. .+++|+.+
T Consensus 200 ~VEv~tleea~eA~~~------------------------GaD~I~LDn-~~~e~l~~av~~~~~~-----~~~i~leA- 248 (288)
T PRK07428 200 EVETETLEQVQEALEY------------------------GADIIMLDN-MPVDLMQQAVQLIRQQ-----NPRVKIEA- 248 (288)
T ss_pred EEECCCHHHHHHHHHc------------------------CCCEEEECC-CCHHHHHHHHHHHHhc-----CCCeEEEE-
Confidence 3567899999998853 689999993 3322222333444432 24566554
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...+..+.|+|..-+
T Consensus 249 sGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 249 SGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred ECCCCHHHHHHHHHcCCCEEEE
Confidence 5556788888999999987653
No 288
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.65 E-value=3e+02 Score=31.16 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=62.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---cC---CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 951 RILLAEDTPLIQIVACKILEK---VG---ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~---~g---~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.|||-|++-... .+...+++ .. .-.+.+.+-+||.++++. .+|+|++|-
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a------------------------gaDiI~LDn 210 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA------------------------GADIIMLDN 210 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc------------------------CcCEEEECC
Confidence 377777775443 44444432 22 135678999999999863 589999997
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+.|.+ =-++.+.+++... .++ ..+..++.-..+...+..+.|+|..-+
T Consensus 211 ~~~e~-l~~~v~~l~~~~~---~~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 211 MTPEE-IREVIEALKREGL---RER-VKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CCHHH-HHHHHHHHHhcCc---CCC-EEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 65442 2334444443211 022 457778888889999999999987654
No 289
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=32.62 E-value=5.5e+02 Score=26.63 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=44.3
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+.+.++..+.+.++. ......+.++..+ ..........+.|.+.++.||+....+...+.....
T Consensus 48 ~dlvl~d~~~~~~~g~~~~~~l~~---~~~~~~ii~ls~~-~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 48 PDLVILDVGLPDISGFELCRQLLA---FHPALPVIFLTAR-SDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEEEcC-CcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 467888988888766443333322 1122233333322 222334455667888999999999998888776654
No 290
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=32.61 E-value=4.8e+02 Score=32.27 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=64.8
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHh-c-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAEDTPL---IQIVACKILEK-V-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvdD~~~---~~~~l~~~L~~-~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|..|+++|-..- +..-+.+.+++ . +..+.. +.+.++|..+++. ..|.|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a------------------------GaD~i~ 315 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA------------------------GVDGLR 315 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc------------------------CcCEEE
Confidence 567787775432 21123333443 3 344433 7788888888753 578876
Q ss_pred Ec--------------CCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 MD--------------CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 mD--------------i~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.- +-.|...-+..+.++.+. ..+|||+=.+-....+..+|+.+||+.++.
T Consensus 316 vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~------~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 316 VGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ------HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ECCCCCccccCccccccCCCcccHHHHHHHHHHh------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 53 223444455556666542 248999999999999999999999998875
No 291
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=32.40 E-value=4e+02 Score=32.19 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=71.1
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+. ..++.+
T Consensus 5 ~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~----------------------------------~~~~Dl 50 (469)
T PRK10923 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA----------------------------------SKTPDV 50 (469)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 4566777777788888888887776655443333222111 123568
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..++++++-.+.+.++. ......+. +..............+.|...++.||+....+...+.....
T Consensus 51 vllD~~lp~~dgl~~l~~ir~---~~~~~pvI-vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 51 LLSDIRMPGMDGLALLKQIKQ---RHPMLPVI-IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred EEECCCCCCCCHHHHHHHHHh---hCCCCeEE-EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 899999998876544333332 11122222 33333333445566778889999999999988887766543
No 292
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.29 E-value=4e+02 Score=30.06 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
+.++.+++-++. ....++...+..|+.+..+.+..+..+.++... ....+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------------------~~~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------------------EEARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 356777665543 333445566668888888877655444443220 1236999999974
Q ss_pred CCCCC--HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHH----HhcCCCEEEEcCCC
Q 001298 1026 MPKMD--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKC----LGVGMNAYLTKPID 1081 (1105)
Q Consensus 1026 MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~----l~aG~d~yL~KPi~ 1081 (1105)
+.. .-+.++++++..... .++-.+.+++|.....+.... -..+.+..|.--+|
T Consensus 164 --Gr~~~~~~~l~el~~~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 164 --GKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred --CCCcCCHHHHHHHHHHHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 322 233444444432211 122346677776555444332 24577777665454
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=31.98 E-value=4.1e+02 Score=30.94 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHHhcCCEEEEECCHHHH----HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAEDTP---LIQIVACKILEKVGATVSVVPDGLQA----VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvdD~~---~~~~~l~~~L~~~g~~v~~a~ng~eA----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|.+|++++-+. .....++..-+..|..+.....|.+. .+.++.. ....+|+||
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~--------------------~~~~~DvVL 227 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA--------------------KARGIDVVL 227 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH--------------------HhCCCCEEE
Confidence 56888887663 33445566666778777666555332 2322211 123689999
Q ss_pred EcCCCCCCC-HHHHHHHHHccccccCCCCcceEEEeccCCHHHH--HHHH--hcCCCEEEEcCCCH
Q 001298 1022 MDCQMPKMD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADE--KKCL--GVGMNAYLTKPIDS 1082 (1105)
Q Consensus 1022 mDi~MP~md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~--~~~l--~aG~d~yL~KPi~~ 1082 (1105)
.|.- +.+. --++..++++..... .++..++++.|....+.. .+.+ ..|.+..+.--+|.
T Consensus 228 IDTa-Gr~~~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 228 IDTA-GRMHTDANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred EECC-CccCCcHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 9974 2221 234444544432211 134556666665543333 2333 36888887655554
No 294
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=31.95 E-value=6.1e+02 Score=26.47 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=64.3
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.++....+..+...++..|.....+.........+. .....++
T Consensus 3 iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 48 (227)
T TIGR03787 3 IAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR----------------------------------QRLPDLA 48 (227)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH----------------------------------hCCCCEE
Confidence 455666666677777777776665544333222211110 1234678
Q ss_pred EEEeecccc--ChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDL--SSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++. ++..+.+.++. ......+ .+..............+.|.+.++.||+....+...+..+..
T Consensus 49 ild~~l~~~~~~g~~~~~~i~~---~~~~~pi-i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 49 IIDIGLGEEIDGGFMLCQDLRS---LSATLPI-IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEECCCCCCCCCHHHHHHHHHh---cCCCCCE-EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 889888862 44333333322 1111222 223333333444556678889999999999988888777654
No 295
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.94 E-value=3.2e+02 Score=28.91 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=35.7
Q ss_pred ccEEEEcCCCCCCCH-------HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1017 FDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1017 ~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.|.|+.+..-|+..| ++..+++|+..... ..++||++-- --..+...++++.|+|.++.-
T Consensus 127 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v~G-GI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 127 VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEVDG-GVNDDNARELAEAGADILVAG 193 (210)
T ss_pred CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEEEC-CcCHHHHHHHHHcCCCEEEEC
Confidence 577776554444433 45556666543221 1236765444 445678888899999987653
No 296
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=31.80 E-value=1.6e+02 Score=34.30 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=73.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+.+.++..+.....+...+.....+ ...|..
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~----------------------------------~~~~~d 60 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL----------------------------------QEEPPD 60 (360)
T ss_pred ceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh----------------------------------cccCCc
Confidence 3466777777778888888888887777665444322221 113467
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLL 850 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l 850 (1105)
+++.|+.++++++.-..+++........+ +++++.+...-++........|.+-++.||+.+..+....
T Consensus 61 lvllD~~mp~mdg~ev~~~lk~~~p~t~~-ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 61 LVLLDVRMPEMDGAEVLNKLKAMSPSTRR-IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred eEEeeccCCCccHHHHHHHHHhcCCcccc-cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 89999999999998777776654333222 3334444444444444444588888999999965555433
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.48 E-value=5.5e+02 Score=30.67 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=65.4
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
+.+|.+++-|+. ....++..-+..|..+..+.+..+..+.++... ....+|+||.|.-
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------------------~~~~~D~VLIDTA 294 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------------------YVNCVDHILIDTV 294 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------------------hcCCCCEEEEECC
Confidence 468888887754 234555555667877777888877666665321 0135899999984
Q ss_pred --CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHH----hcCCCEEEEcCCCH
Q 001298 1026 --MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPIDS 1082 (1105)
Q Consensus 1026 --MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~~ 1082 (1105)
+|.. -+.+..+++..... .++..++++++.....+...++ ..|.+.+|.--+|-
T Consensus 295 Gr~~~d--~~~l~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 295 GRNYLA--EESVSEISAYTDVV-HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred CCCccC--HHHHHHHHHHhhcc-CCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 2322 23344444432211 1334456677766666666554 35677777655553
No 298
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=31.44 E-value=3.7e+02 Score=29.62 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCEEEEECCH--HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHH
Q 001298 963 IVACKILEKVGATVSVVPDG--LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEAT 1035 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~a~ng--~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~ 1035 (1105)
....+.|-+.||.|....+. --|-. +.. -=-..+|-+--|.-+| -+.+
T Consensus 120 l~Aae~Lv~eGF~VlPY~~dD~v~arr-Lee------------------------~GcaavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 120 LKAAEQLVKEGFVVLPYTTDDPVLARR-LEE------------------------AGCAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred HHHHHHHHhCCCEEeeccCCCHHHHHH-HHh------------------------cCceEeccccccccCCcCcCCHHHH
Confidence 34566777889998765443 33322 221 1235778888888776 3466
Q ss_pred HHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1036 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1036 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
+-|++. .++|||+=.+-..+++...++|.|+|+.|.-
T Consensus 175 ~iiie~------a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 175 EIIIEE------ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHh------CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 777753 3599999999999999999999999999863
No 299
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=31.39 E-value=49 Score=41.24 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCChhhHhhhhcccc
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFE 635 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~ 635 (1105)
.|+|.|+|+||++...+-+-.+++
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhh
Confidence 489999999999998877655554
No 300
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.36 E-value=3.8e+02 Score=30.42 Aligned_cols=68 Identities=16% Similarity=0.006 Sum_probs=49.0
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
.+.|.+-+|+.++++. .+|+|++|-+-| .+=-++...++. ..++-.
T Consensus 197 eVEv~slee~~ea~~~------------------------gaDiImLDn~s~-e~l~~av~~~~~---------~~~lea 242 (281)
T PRK06543 197 EVEVDRLDQIEPVLAA------------------------GVDTIMLDNFSL-DDLREGVELVDG---------RAIVEA 242 (281)
T ss_pred EEEeCCHHHHHHHHhc------------------------CCCEEEECCCCH-HHHHHHHHHhCC---------CeEEEE
Confidence 4679999999998853 689999996433 233344444431 236888
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...+..+.|+|-.-+
T Consensus 243 SGgI~~~ni~~yA~tGVD~Is~ 264 (281)
T PRK06543 243 SGNVNLNTVGAIASTGVDVISV 264 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
Confidence 9999999999999999986543
No 301
>PLN02823 spermine synthase
Probab=31.19 E-value=1.7e+02 Score=34.14 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=38.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-----CCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-----GATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-----g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
.+|-+||=|+...++++..+... ..++ ....||.+.++.. ...||+||+|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------------------------~~~yDvIi~D 183 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------------------------DEKFDVIIGD 183 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------------------------CCCccEEEec
Confidence 47999999999999999988532 1233 3456777655321 2479999999
Q ss_pred CCCCC
Q 001298 1024 CQMPK 1028 (1105)
Q Consensus 1024 i~MP~ 1028 (1105)
+--|.
T Consensus 184 ~~dp~ 188 (336)
T PLN02823 184 LADPV 188 (336)
T ss_pred CCCcc
Confidence 86554
No 302
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.12 E-value=4.1e+02 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEE------cCCCHHHHHHHH
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLT------KPIDSERMVSTI 1089 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~------KPi~~~~L~~~I 1089 (1105)
+++++++++. .++|||+.-+-.+.++..++++.| +|..+. +-++.+++.+.+
T Consensus 188 ~~~~~~i~~~------~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSEA------VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 6888888864 248999999999999999999988 999554 445666555443
No 303
>PRK09483 response regulator; Provisional
Probab=30.42 E-value=6.3e+02 Score=26.12 Aligned_cols=75 Identities=12% Similarity=0.218 Sum_probs=47.0
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+.+++++|..+.+.++..+.+.+.. ......+.++. ..............|...++.||.....+...+..+..+
T Consensus 47 ~~dlvi~d~~~~~~~g~~~~~~l~~---~~~~~~ii~ls-~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 47 AVDVVLMDMNMPGIGGLEATRKILR---YTPDVKIIMLT-VHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH---HCCCCeEEEEe-CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468888998888776444333321 11222233332 223333444566788999999999999999988877654
No 304
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=30.34 E-value=3.6e+02 Score=32.47 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=66.8
Q ss_pred EeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEE
Q 001298 705 LATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVI 784 (1105)
Q Consensus 705 ~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 784 (1105)
+.+.....+..+...+...|..+..+.+...+...+. ..++.++++
T Consensus 3 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~DlVll 48 (463)
T TIGR01818 3 VVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA----------------------------------RGQPDLLIT 48 (463)
T ss_pred EEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh----------------------------------cCCCCEEEE
Confidence 4455556666777777777766554443332221110 123468889
Q ss_pred EeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 785 DIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 785 d~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
|..++++++..+.+.++.. .....+.+ ..............+.|..-++.||+....+...+....
T Consensus 49 D~~~p~~~g~~ll~~l~~~---~~~~~vIv-lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 49 DVRMPGEDGLDLLPQIKKR---HPQLPVIV-MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred cCCCCCCCHHHHHHHHHHh---CCCCeEEE-EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 9999998775544444321 12222333 333333444556677888899999999999988876654
No 305
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=30.19 E-value=6.3e+02 Score=26.05 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=44.9
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..+.+.++..+.+.++. ......+. +................|...++.||+....+...+..+..
T Consensus 44 ~~dlvild~~l~~~~g~~~~~~i~~---~~~~~~ii-~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 44 PYDAVILDLTLPGMDGRDILREWRE---KGQREPVL-ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh---cCCCCcEE-EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 3468888998888766444433332 11122222 23333333344455667888899999999988887776654
No 306
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=30.17 E-value=1.3e+02 Score=32.71 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=45.0
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1017 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1017 ~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..+|++|+.--+| .| +|+++++++. ..+|||+--+-.+.++..++.++|+|+.+.
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~------~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL------SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3699999987544 34 7888888864 248999999899999999999999999876
No 307
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.17 E-value=1.8e+02 Score=31.64 Aligned_cols=107 Identities=17% Similarity=0.296 Sum_probs=65.3
Q ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHH
Q 001298 965 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIE 1037 (1105)
Q Consensus 965 l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-------~e~~~~ 1037 (1105)
+-..+++.|..+-.|-|..--++.+.... ...|+|+.=---|+-.| ++-+++
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---------------------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---------------------DKVDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------------------HhCCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 33556778988888776665555554332 24665554233465544 556677
Q ss_pred HHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhh
Q 001298 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1038 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~ 1094 (1105)
+|+...+.+ .++||.+ -+.-..+...++.++|||.++. +.-++.+....+++.++
T Consensus 157 l~~~~~~~~-~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 157 VRKMIDESG-RDIRLEI-DGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELA 216 (220)
T ss_pred HHHHHHhcC-CCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 776543322 3477766 5555688889999999997754 44455555555555443
No 308
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=30.13 E-value=26 Score=43.94 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCChhhHh-----------hhhcccccCCC---CCCCCCCCccchHHHHHHHHHHcC
Q 001298 612 CFEVDDTGCGIDQSKWE-----------TVFESFEQGDP---STTRKHGGTGLGLSIVRTLVNKMG 663 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~-----------~IFe~F~q~~~---s~~~~~~GtGLGLaIvk~LVe~~g 663 (1105)
.++|.|+|.|||-+..+ -||.....+.. ...-..|-.|.|.+.|.-|-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 38999999999986542 22322222111 111123558999999877766543
No 309
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.97 E-value=1.4e+02 Score=32.20 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccC----------CHHHHHHHHhcCCCEEEE------cC--CCHHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHA----------MNADEKKCLGVGMNAYLT------KP--IDSERMVSTILR 1091 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~----------~~~~~~~~l~aG~d~yL~------KP--i~~~~L~~~I~~ 1091 (1105)
+++..+.+|+. ..+|||.++.++ ..++...|.++|+|-.+. +| ....++...+++
T Consensus 44 ~~~~i~~i~~~------~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 44 GVEDIKAIRAV------VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CHHHHHHHHHh------CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 48889999874 248888665422 245678999999994432 45 555666666655
No 310
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.97 E-value=2.2e+02 Score=30.06 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=37.6
Q ss_pred CHHHHHHHHHccccccCCCCcce-EEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Q 001298 1030 DGYEATIEIRKSESEHGARNIPI-VALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTIL 1090 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipI-IalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~ 1090 (1105)
-|++.+++||+. ...|+ +.+...........|.++|+|..+.-....++....++
T Consensus 43 ~~~~~v~~i~~~------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~ 98 (210)
T TIGR01163 43 FGPPVLEALRKY------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQ 98 (210)
T ss_pred cCHHHHHHHHhc------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHH
Confidence 488999999963 12565 43555566677778889999997776555555554443
No 311
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=29.68 E-value=80 Score=35.70 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=45.5
Q ss_pred CHHHHHHHHHccccccCCCCcceE--EEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~ 1094 (1105)
-++|+++++++. ..+||| +.-+-..+++...++++|+|.+.. |.-++.+....+...+.
T Consensus 190 ~~~elL~ei~~~------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 190 APYELVKEVAEL------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCHHHHHHHHHh------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 468999999874 248998 777778999999999999999864 44466666666665554
No 312
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=29.62 E-value=1.1e+03 Score=29.32 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=8.3
Q ss_pred HHHHhhhhHHHHHHHH
Q 001298 390 LILTNGVSKEMKLRAE 405 (1105)
Q Consensus 390 ~~l~~~i~~~~~l~~~ 405 (1105)
+.+.+.+.++++...+
T Consensus 212 ~~i~~~I~~pL~~l~~ 227 (554)
T PRK15041 212 FGIKASLVAPMNRLID 227 (554)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345556666554433
No 313
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.44 E-value=1.5e+02 Score=33.19 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=42.9
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEecc------CCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
+.++.++++|+. ..+|+|+||=. ..+....+|.++|+|+.+.--...++....+..+
T Consensus 78 ~~~~~~~~~r~~------~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE------IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC------CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 468999999952 34898888854 3355678999999999999888887766555444
No 314
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=29.43 E-value=7e+02 Score=26.33 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.++.|+.+++..++.+..+++..| |.|..+.+-+++++.++. ....+.|+..+...+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------------------~G~vvhLtmyga~~~ 90 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------------------GGIVVHLTMYGENIQ 90 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------------------CCcEEEEEEecCCcc
Confidence 479999999999999999999997 669999999999998862 235789999999886
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHH
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1066 (1105)
. .++ .||+.... . ..-+|++.|...+.+.-+
T Consensus 91 ~--~~~---~ir~~~~~-~--~p~LIvvGg~gvp~evye 121 (176)
T PRK03958 91 D--VEP---EIREAHRK-G--EPLLIVVGAEKVPREVYE 121 (176)
T ss_pred c--hHH---HHHHhhcc-C--CcEEEEEcCCCCCHHHHh
Confidence 6 444 44532111 1 112344446666655543
No 315
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=29.36 E-value=6.3e+02 Score=27.12 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 777 ~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.+.+++++|+.++++++-...+.+. ...... -+.+...........+..+.|.+.++.|......+...+..+..+
T Consensus 45 ~~pdvvl~Dl~mP~~~G~e~~~~l~---~~~p~~-~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 45 LKPDVVLLDLSMPGMDGLEALKQLR---ARGPDI-KVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred cCCCEEEEcCCCCCCChHHHHHHHH---HHCCCC-cEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3457899999999988754444433 222222 233444445556667778899999999999999999999988765
Q ss_pred c
Q 001298 857 K 857 (1105)
Q Consensus 857 ~ 857 (1105)
.
T Consensus 121 ~ 121 (211)
T COG2197 121 G 121 (211)
T ss_pred C
Confidence 4
No 316
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=29.05 E-value=7.7e+02 Score=26.84 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=49.6
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
...++++|..++++++....+.++.... .....+.+..............+.|...++.||+....+...+..+..
T Consensus 48 ~~DlvllD~~mp~~dG~~~l~~i~~~~~--~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 48 QPDVVVLDIIMPHLDGIGVLEKLNEIEL--SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcc--ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999987655555443211 111222333344444455666778899999999999999888776543
No 317
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=29.00 E-value=2.9e+02 Score=28.75 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC-------CHHHHHH
Q 001298 964 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------DGYEATI 1036 (1105)
Q Consensus 964 ~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m-------dG~e~~~ 1036 (1105)
..+.++.....--..+.+.+|+.++.+ ...|.|+.----|-- -|++..+
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~~------------------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~ 142 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAEE------------------------LGADYVFLGPVFPTSSKPGAPPLGLDGLR 142 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHH------------------------CTTSEEEEETSS--SSSSS-TTCHHHHHH
T ss_pred HhhhhcccceEEEeecCcHHHHHHhhh------------------------cCCCEEEECCccCCCCCccccccCHHHHH
Confidence 345566554455567899999766653 257999887654322 3888888
Q ss_pred HHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE
Q 001298 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1037 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
++++.. .+||+++-+-+ .++...+.++|+++.-
T Consensus 143 ~~~~~~------~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 143 EIARAS------PIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp HHHHHT------SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred HHHHhC------CCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 888642 38999998864 5567889999999864
No 318
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.86 E-value=4.3e+02 Score=32.95 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=52.6
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHh-cCCCEEEE------cCCCHHHHH
Q 001298 1017 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG-VGMNAYLT------KPIDSERMV 1086 (1105)
Q Consensus 1017 ~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~------KPi~~~~L~ 1086 (1105)
=.+++.|+..-+| .| +|+++.+++. ..+|||+..+-...++..++++ .|+|+-+. +-++..++.
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~------~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k 526 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDA------VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK 526 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH
Confidence 3699999988765 35 5678888764 3599999999999999999997 66777665 556777777
Q ss_pred HHHHH
Q 001298 1087 STILR 1091 (1105)
Q Consensus 1087 ~~I~~ 1091 (1105)
..+..
T Consensus 527 ~~l~~ 531 (538)
T PLN02617 527 EHLLE 531 (538)
T ss_pred HHHHH
Confidence 66543
No 319
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=27.98 E-value=1.3e+02 Score=31.65 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~ 983 (1105)
|||+|-....-.-+..+|++.|+.+.+..+-.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~ 33 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDS 33 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCC
Confidence 89999999999999999999999998877543
No 320
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=27.78 E-value=2.6e+02 Score=31.91 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.++++++... .++|||+..+-.+.+|..+++.+|||....
T Consensus 239 l~~v~~~~~~~~----~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPE----PGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcC----CCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 677777776431 369999999999999999999999998654
No 321
>PRK07695 transcriptional regulator TenI; Provisional
Probab=27.78 E-value=4.2e+02 Score=28.04 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=38.2
Q ss_pred CccEEEEcCCCC-----C--CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE
Q 001298 1016 RFDLILMDCQMP-----K--MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075 (1105)
Q Consensus 1016 ~~DlIlmDi~MP-----~--mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1075 (1105)
..|.|+..-..| . ..|++.++++++. .++||+++-+- ..++...++++|+|.+
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~------~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARA------LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh------CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 577776653222 1 2367888888753 24899988777 7888999999999987
No 322
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=27.69 E-value=6.7e+02 Score=25.74 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=44.9
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..+++.++......++. ......+.+ ................|.+.++.||+....+...+.....
T Consensus 42 ~~dlvl~d~~~~~~~g~~~~~~l~~---~~~~~~iiv-ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 42 DYDLIILDVMLPGMDGWQILQTLRR---SGKQTPVLF-LTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHc---cCCCCcEEE-EEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 3467888988888766433333321 111222222 3333333444556678888999999999988887776554
No 323
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=27.60 E-value=4.3e+02 Score=27.79 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=38.1
Q ss_pred ccEEEEcCCCCCCCH-------HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1017 FDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1017 ~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.|.|+.+.-.|+-+| .+..+++|+..... ..++||++.- --..+...++.++|+|.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~-~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPEN-NLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhc-CCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 688887766666544 45556666543211 1247875544 44468888999999999876
No 324
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=27.16 E-value=5.6e+02 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred CcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+|||+--+-....+..+++.+|||..+.
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 48999877788899999999999999876
No 325
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=27.02 E-value=2.3e+02 Score=31.92 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=48.1
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
-..+.+-+||.++++ ...|+|.+|-.-|. +=-++.+.+|+. .+++||++.
T Consensus 187 gVev~t~eea~~A~~------------------------~gaD~I~ld~~~p~-~l~~~~~~~~~~-----~~~i~i~As 236 (272)
T cd01573 187 VVEVDSLEEALAAAE------------------------AGADILQLDKFSPE-ELAELVPKLRSL-----APPVLLAAA 236 (272)
T ss_pred EEEcCCHHHHHHHHH------------------------cCCCEEEECCCCHH-HHHHHHHHHhcc-----CCCceEEEE
Confidence 456788999988874 26899999965553 112334444432 135887776
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-+ -..+...+..++|+|.+..
T Consensus 237 GG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 237 GG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred CC-CCHHHHHHHHHcCCcEEEE
Confidence 54 4678888999999998754
No 326
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=26.94 E-value=3.7e+02 Score=36.85 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=75.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...++..|..+..+.........+. ..++.
T Consensus 959 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~d 1004 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS----------------------------------MQHYD 1004 (1197)
T ss_pred ceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh----------------------------------cCCCC
Confidence 45777888888888888888888877665544333222211 12456
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
++++|..++++++......++.. .. ...+++..............+.|.+.++.||+....+...+....
T Consensus 1005 lil~D~~mp~~~g~~~~~~i~~~---~~-~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1005 LLITDVNMPNMDGFELTRKLREQ---NS-SLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc---CC-CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 88999999999886554444321 11 122334444444455566677899999999999998888776543
No 327
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.83 E-value=5.9e+02 Score=30.50 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCH---HHHHHHHHHHHhc--CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001298 948 EGLRILLAEDTP---LIQIVACKILEKV--GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020 (1105)
Q Consensus 948 ~g~~ILIvdD~~---~~~~~l~~~L~~~--g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI 1020 (1105)
.|..|+++|-.. ....-+...+++. +..+. -+.+.++|..+++. ..|.|
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a------------------------GaD~I 219 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV------------------------GADCL 219 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc------------------------CCCEE
Confidence 356788877522 2222222333332 22232 36788888887752 47777
Q ss_pred EEcCCCCC-------C-----CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1021 LMDCQMPK-------M-----DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1021 lmDi~MP~-------m-----dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..-+. |+ . .-++++..+++.... ..+|||+=-+-....+..+|+.+|||.++.
T Consensus 220 ~vG~g-~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~---~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 220 KVGIG-PGSICTTRIVAGVGVPQITAICDVYEVCKN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred EECCC-CCcCCcceeecCCCCChHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 64221 11 0 124444444443222 248999999999999999999999998875
No 328
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=26.80 E-value=1.9e+02 Score=32.53 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=55.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCEE----EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGATV----SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v----~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
++...++.+||....+. +|..+|... ....|-++....+..... ...-=.++.
T Consensus 28 L~~~D~iaaEDTR~t~~----LL~~~~I~~~~is~h~hne~~~~~~li~~l~-------------------~g~~valVS 84 (275)
T COG0313 28 LKEVDVIAAEDTRVTRK----LLSHLGIKTPLISYHEHNEKEKLPKLIPLLK-------------------KGKSVALVS 84 (275)
T ss_pred HhhCCEEEEeccHHHHH----HHHHhCCCCceecccCCcHHHHHHHHHHHHh-------------------cCCeEEEEe
Confidence 45568999999977664 555566522 223567777766644321 122346789
Q ss_pred cCCCCCCC--HHHHHHHHHccccccCCCCcceEEEeccC
Q 001298 1023 DCQMPKMD--GYEATIEIRKSESEHGARNIPIVALTAHA 1059 (1105)
Q Consensus 1023 Di~MP~md--G~e~~~~IR~~~~~~~~~~ipIIalTa~~ 1059 (1105)
|-.||..+ |+++.++.|+. .++|+.+-+-.
T Consensus 85 DAG~P~ISDPG~~LV~~a~~~-------gi~V~~lPG~s 116 (275)
T COG0313 85 DAGTPLISDPGYELVRAAREA-------GIRVVPLPGPS 116 (275)
T ss_pred cCCCCcccCccHHHHHHHHHc-------CCcEEecCCcc
Confidence 99999875 99999999963 37888877644
No 329
>PRK13566 anthranilate synthase; Provisional
Probab=26.53 E-value=1.8e+02 Score=37.50 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=33.5
Q ss_pred ccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001298 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983 (1105)
Q Consensus 945 ~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~ 983 (1105)
....|++|||||-...+-..+.+.|++.|++|..+....
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~ 560 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF 560 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC
Confidence 345678999999998888899999999999999887764
No 330
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=26.50 E-value=5.5e+02 Score=29.19 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=42.0
Q ss_pred CccEEEEcCCC-----CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|...-.- .+...++++.++++... .++|||+--+-.+..+..+|+..|||....
T Consensus 193 G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~----~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 193 GADGIVVSNHGGRQLDGAPATIDALPEIVAAVG----GRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc----CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 46666554321 12345778888876422 259999999999999999999999998765
No 331
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.25 E-value=6.9e+02 Score=26.58 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=44.3
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccccccCCCCc-ceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCH
Q 001298 1016 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNI-PIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDS 1082 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~i-pIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~ 1082 (1105)
..|.|+++..-|+.+| ++-.+++|+.... .++ |.|++.+--..+...++.++|+|.++. +.-++
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~---~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE---RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh---cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 3687777765565544 3455555543221 123 566676767778888999999997654 44455
Q ss_pred HHHHHHHHHH
Q 001298 1083 ERMVSTILRL 1092 (1105)
Q Consensus 1083 ~~L~~~I~~l 1092 (1105)
.+....++++
T Consensus 208 ~~~~~~~~~~ 217 (220)
T PRK05581 208 KEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 332
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=25.94 E-value=63 Score=44.19 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCChhhH--------hhhhcccccCCCC---CCCC-CCCccchHHHHHHHHHHc
Q 001298 612 CFEVDDTGCGIDQSKW--------ETVFESFEQGDPS---TTRK-HGGTGLGLSIVRTLVNKM 662 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l--------~~IFe~F~q~~~s---~~~~-~~GtGLGLaIvk~LVe~~ 662 (1105)
.|+|.|+|.|||-+.- +-||.....+..- ..+- .|-.|.|.++|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 3899999999997643 2355444333221 1111 234699999987776654
No 333
>PRK12704 phosphodiesterase; Provisional
Probab=25.71 E-value=55 Score=40.39 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=37.7
Q ss_pred ceEEEeccCCHH--HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1051 PIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1051 pIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
.+|++|+++... ....+++.|+.|+..||+..+++...+..-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 378899987776 77789999999999999999999999876553
No 334
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.54 E-value=3e+02 Score=31.16 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=48.2
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
--..+++.+|+.++++. .+|+|.+|-+ |.|.++++.+... +++|+++
T Consensus 192 I~VEv~tleea~eA~~~------------------------gaD~I~LD~~-----~~e~l~~~v~~~~----~~i~leA 238 (277)
T PRK05742 192 VEVEVESLDELRQALAA------------------------GADIVMLDEL-----SLDDMREAVRLTA----GRAKLEA 238 (277)
T ss_pred EEEEeCCHHHHHHHHHc------------------------CCCEEEECCC-----CHHHHHHHHHHhC----CCCcEEE
Confidence 34567899999888853 6899999843 4555555554321 3577776
Q ss_pred EeccCCHHHHHHHHhcCCCEEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.- .-..+....+.++|+|.+-+
T Consensus 239 sG-GIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 239 SG-GINESTLRVIAETGVDYISI 260 (277)
T ss_pred EC-CCCHHHHHHHHHcCCCEEEE
Confidence 54 55678888999999997754
No 335
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.49 E-value=1.5e+02 Score=33.38 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=45.9
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCCCCC
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1102 (1105)
...+++|+..+ .-.+|.++.++. ++..++.++|+|....=|+.++++...+..+-.+.+-++.|
T Consensus 170 ~~v~~~r~~~~-----~~~~Igvev~s~-eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~ipi~AiG 233 (268)
T cd01572 170 EAVRRARAAAP-----FTLKIEVEVETL-EQLKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASG 233 (268)
T ss_pred HHHHHHHHhCC-----CCCeEEEEECCH-HHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCCcEEEEC
Confidence 35677776532 134688888865 66788999999999999999999988886543344444443
No 336
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=25.39 E-value=4.9e+02 Score=23.29 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001298 372 IILISASVCILVIGCICILILTNGV 396 (1105)
Q Consensus 372 ~~~i~~~~~i~li~~~~~~~l~~~i 396 (1105)
..+++++.-+++++.+++|-+...+
T Consensus 24 ~~vll~LtPlfiisa~lSwkLaK~i 48 (74)
T PF15086_consen 24 TTVLLILTPLFIISAVLSWKLAKAI 48 (74)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444556667777777665544
No 337
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=24.95 E-value=2.9e+02 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred CcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+|||+=-+-....+..+|+.+|||..+.
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 59999999999999999999999999875
No 338
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=24.91 E-value=7.5e+02 Score=25.21 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=45.5
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+++.++......++. ...... ..+..............+.|...++.||+....+...+.....+
T Consensus 46 ~dlvi~d~~~~~~~g~~~~~~l~~---~~~~~~-ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 46 PDIVIIDVDIPGVNGIQVLETLRK---RQYSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---hCCCCe-EEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 467888988888776443333322 111122 22223333333445566688889999999999999988877643
No 339
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.89 E-value=2.4e+02 Score=31.70 Aligned_cols=91 Identities=16% Similarity=0.042 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
++.++.+....-..+++.+...-.--..+.+-+||.++.+. ..|.|.+|-.-|
T Consensus 157 Hi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~------------------------gaDyI~ld~~~~--- 209 (265)
T TIGR00078 157 HIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA------------------------GADIIMLDNMKP--- 209 (265)
T ss_pred HHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc------------------------CCCEEEECCCCH---
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY 1075 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1075 (1105)
|-++++.+... .++||++ ++.-..+......++|+|..
T Consensus 210 --e~lk~~v~~~~----~~ipi~A-sGGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 210 --EEIKEAVQLLK----GRVLLEA-SGGITLDNLEEYAETGVDVI 247 (265)
T ss_pred --HHHHHHHHHhc----CCCcEEE-ECCCCHHHHHHHHHcCCCEE
No 340
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=24.81 E-value=5.9e+02 Score=28.87 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=45.3
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE------EEcCCCHHHHHHHHHHHhhcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY------LTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y------L~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
.++.+++||+. .++|||+..+-.+.++..+++.+|+|.+ +..|.-+..+..-+.+++.+.
T Consensus 222 ~l~~v~~i~~~------~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 222 ALRMVYQVYQA------VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred cHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 36778888863 2499999999999999999999998754 346766666666666666543
No 341
>PRK15115 response regulator GlrR; Provisional
Probab=24.76 E-value=4.6e+02 Score=31.39 Aligned_cols=117 Identities=11% Similarity=0.157 Sum_probs=71.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...++..|..+..+.........+. ..+..
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~----------------------------------~~~~d 51 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN----------------------------------REKVD 51 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------cCCCC
Confidence 45677777777788888888887776555444333222111 12346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..++++++......+.. ......+.++. ............+.|...++.||+....+...+.....
T Consensus 52 lvilD~~lp~~~g~~ll~~l~~---~~~~~pvIvlt-~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 52 LVISDLRMDEMDGMQLFAEIQK---VQPGMPVIILT-AHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred EEEEcCCCCCCCHHHHHHHHHh---cCCCCcEEEEE-CCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 7889999998877544333321 11122233333 33333444556678888899999999999888876654
No 342
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.66 E-value=6.2e+02 Score=26.52 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=52.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEEC-------CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVP-------DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~-------ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
|||=|-+...++.+...-++.|.++...+ +|+|.++++.+. ...|.=+.|=|+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a--------------------~~DPV~VMfDD~ 62 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA--------------------PHDPVLVMFDDK 62 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC--------------------CCCCEEEEEeCC
Confidence 77888888899999888899999988764 789999999753 122333444477
Q ss_pred CCCCCC-HHHHHHHHHcc
Q 001298 1025 QMPKMD-GYEATIEIRKS 1041 (1105)
Q Consensus 1025 ~MP~md-G~e~~~~IR~~ 1041 (1105)
-.+++- |-++++.+-.+
T Consensus 63 G~~g~G~GE~Al~~v~~h 80 (180)
T PF14097_consen 63 GFIGEGPGEQALEYVANH 80 (180)
T ss_pred CCCCCCccHHHHHHHHcC
Confidence 777764 77888888754
No 343
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=24.63 E-value=2.1e+02 Score=29.13 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 001298 374 LISASVCILVIGCICILILTNGVS 397 (1105)
Q Consensus 374 ~i~~~~~i~li~~~~~~~l~~~i~ 397 (1105)
+..+++++.++||+++.+..+...
T Consensus 95 v~~~Mi~lTiiGc~~mv~sGK~aa 118 (146)
T PF06388_consen 95 VCYIMIALTIIGCIAMVISGKRAA 118 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHh
Confidence 333445667788888766554433
No 344
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.61 E-value=5.9e+02 Score=31.74 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1015 PRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1015 ~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+..|.++.-..=+..+ ..++..+|+.. ++++||+-+. +.++..+..++|+|..+. ..+++...+.+.+.
T Consensus 480 ~~a~~viv~~~~~~~~-~~iv~~~~~~~-----~~~~iiar~~--~~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~ 548 (558)
T PRK10669 480 DCARWLLLTIPNGYEA-GEIVASAREKR-----PDIEIIARAH--YDDEVAYITERGANQVVM---GEREIARTMLELLE 548 (558)
T ss_pred cccCEEEEEcCChHHH-HHHHHHHHHHC-----CCCeEEEEEC--CHHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhc
Confidence 4678666543222211 23555667642 4578888764 345666778899997773 34455566666655
Q ss_pred cC
Q 001298 1095 NM 1096 (1105)
Q Consensus 1095 ~~ 1096 (1105)
+.
T Consensus 549 ~~ 550 (558)
T PRK10669 549 TP 550 (558)
T ss_pred CC
Confidence 44
No 345
>CHL00148 orf27 Ycf27; Reviewed
Probab=24.54 E-value=8.3e+02 Score=25.59 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=44.6
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+++.++....+.++. .. ...+.++. ............+.|...++.||+....+...+.....
T Consensus 51 ~d~illd~~~~~~~g~~~~~~l~~---~~-~~~ii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 51 PDLVILDVMMPKLDGYGVCQEIRK---ES-DVPIIMLT-ALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---cC-CCcEEEEE-CCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 467888988888776444333332 11 22222332 22333344455667888899999999999888776654
No 346
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.46 E-value=2.8e+02 Score=29.64 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC---C--HHHHHH
Q 001298 964 VACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM---D--GYEATI 1036 (1105)
Q Consensus 964 ~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m---d--G~e~~~ 1036 (1105)
.....|++.|+.+.. +..|...++.+.. -+||.|=+|..+-.. + ...+++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~-----------------------l~~d~iKld~~~~~~~~~~~~~~~~l~ 193 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR-----------------------LPVDLLKIDKSFVRDLQTDPEDEAIVQ 193 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh-----------------------CCCCeEEECHHHHhhhccChhHHHHHH
Confidence 445667889988765 4455666666653 379999999654211 1 345566
Q ss_pred HHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCC----EEEEcCCCHH
Q 001298 1037 EIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMN----AYLTKPIDSE 1083 (1105)
Q Consensus 1037 ~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d----~yL~KPi~~~ 1083 (1105)
.|...... ..+++| .++-.+.++...+.+.|+| .|+.||...+
T Consensus 194 ~l~~~~~~---~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 194 SIIELAQK---LGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHH---CCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 66654332 235544 5677888889999999997 3577887653
No 347
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=24.45 E-value=2.3e+02 Score=29.61 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=48.6
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
-...+.+-+|+.++++. .+|.|.+|-+-| -+=-++.+.+|... ++ ..|.
T Consensus 83 I~VEv~~~ee~~ea~~~------------------------g~d~I~lD~~~~-~~~~~~v~~l~~~~-----~~-v~ie 131 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEA------------------------GADIIMLDNMSP-EDLKEAVEELRELN-----PR-VKIE 131 (169)
T ss_dssp EEEEESSHHHHHHHHHT------------------------T-SEEEEES-CH-HHHHHHHHHHHHHT-----TT-SEEE
T ss_pred EEEEcCCHHHHHHHHHh------------------------CCCEEEecCcCH-HHHHHHHHHHhhcC-----Cc-EEEE
Confidence 34568899999998863 599999997655 22233344443331 22 6788
Q ss_pred EeccCCHHHHHHHHhcCCCEEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.++.-..+...+..+.|+|.+-+
T Consensus 132 ~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 132 ASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EESSSSTTTHHHHHHTT-SEEEE
T ss_pred EECCCCHHHHHHHHhcCCCEEEc
Confidence 88888899999999999988754
No 348
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.43 E-value=2.2e+02 Score=31.07 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE-EEcCCCCCCCHHHH----HHHH
Q 001298 964 VACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI-LMDCQMPKMDGYEA----TIEI 1038 (1105)
Q Consensus 964 ~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI-lmDi~MP~mdG~e~----~~~I 1038 (1105)
.....+++.|..+-.+-+...-++.+.... +....|+| +|.++ |+.+|-.+ +.+|
T Consensus 105 ~~l~~ik~~G~~~gval~p~t~~e~l~~~l-------------------~~~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki 164 (228)
T PTZ00170 105 AVARKIREAGMKVGVAIKPKTPVEVLFPLI-------------------DTDLVDMVLVMTVE-PGFGGQSFMHDMMPKV 164 (228)
T ss_pred HHHHHHHHCCCeEEEEECCCCCHHHHHHHH-------------------ccchhhhHHhhhcc-cCCCCcEecHHHHHHH
Confidence 344555667877666644433333332211 01235644 66665 77777432 3444
Q ss_pred HccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE-----EEcCCCHHHHHHHHHHHhh
Q 001298 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-----LTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1039 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KPi~~~~L~~~I~~l~~ 1094 (1105)
++.... ... --|.+++--..+....+.++|+|-+ |.+.-++++-...+++.++
T Consensus 165 ~~~~~~--~~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 165 RELRKR--YPH-LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred HHHHHh--ccc-CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 443221 112 3488899999999999999999965 4454466666666665554
No 349
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=24.32 E-value=90 Score=38.20 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=29.1
Q ss_pred cccccccccccCCCCCCCcEEEEEEeeccchhHHHHHH
Q 001298 215 SPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMK 252 (1105)
Q Consensus 215 ~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~ 252 (1105)
...+++..||+|+ +|+.+|||.|...+..+.+.+.
T Consensus 136 g~s~R~~~PI~d~---~g~~IGvVsVG~~l~~i~~~i~ 170 (537)
T COG3290 136 GKSLRAKVPIFDE---DGKQIGVVSVGYLLSEIDDVIL 170 (537)
T ss_pred hhhheeecceECC---CCCEEEEEEEeeEhhhHHHHHH
Confidence 4678899999997 8999999999988886666544
No 350
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.17 E-value=2.5e+02 Score=31.58 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=47.9
Q ss_pred EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEE
Q 001298 975 TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVA 1054 (1105)
Q Consensus 975 ~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIa 1054 (1105)
-...+.+-+|+.+++.. .+|+|.+|-.-| |-++++.+.... .+++||++
T Consensus 184 I~vev~t~eea~~A~~~------------------------gaD~I~ld~~~~-----e~l~~~v~~i~~--~~~i~i~a 232 (269)
T cd01568 184 IEVEVETLEEAEEALEA------------------------GADIIMLDNMSP-----EELKEAVKLLKG--LPRVLLEA 232 (269)
T ss_pred EEEecCCHHHHHHHHHc------------------------CCCEEEECCCCH-----HHHHHHHHHhcc--CCCeEEEE
Confidence 34668899999998752 589999997555 334443332111 13577554
Q ss_pred EeccCCHHHHHHHHhcCCCEEEE
Q 001298 1055 LTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1055 lTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...+..++|+|.+-+
T Consensus 233 -sGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 233 -SGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred -ECCCCHHHHHHHHHcCCCEEEE
Confidence 5566778888999999998754
No 351
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=24.10 E-value=1.4e+02 Score=31.77 Aligned_cols=53 Identities=25% Similarity=0.383 Sum_probs=37.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCC--EEEE-ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGA--TVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~-a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.++++||-|.....+++.-++.+|+ ++.. ..|...++..+.. ..+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~----------------------~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT----------------------REPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------------------CCcccEEEeCC
Confidence 4899999999999999999998883 3333 3344444443321 23599999995
No 352
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.03 E-value=5e+02 Score=29.83 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=66.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+.+++++.|.+. +..+...++..|.. +.......+..+.+. ..|+.++=-.
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~-------------------------~adi~v~pS~- 281 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ-------------------------ALDLFVLPSL- 281 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH-------------------------hcCEEEeccc-
Confidence 467888887654 45567777777653 444333344445553 3577664211
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
.+-=|.-+++.+. ..+|||+ |.... ..+.++.|-++++..|-+.+++.++|..++.+
T Consensus 282 ~Eg~~~~~lEAma--------~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 282 AEGISNTILEAMA--------SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVSD 338 (374)
T ss_pred cccCchHHHHHHH--------cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 1222445555544 2489987 43332 23456678899999999999999999988753
No 353
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=23.95 E-value=4.1e+02 Score=29.71 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=45.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC-----CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG-----ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g-----~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
.+|.+||-++...+.++..+...+ ..+. ...||.+.++.. ..+||+|++|
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------------------------~~~yDvIi~D 152 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------------------------ENTFDVIIVD 152 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------------------------CCCccEEEEe
Confidence 479999999999999988886532 1222 335665554422 2479999999
Q ss_pred CCCCCCC-----HHHHHHHHHcccc
Q 001298 1024 CQMPKMD-----GYEATIEIRKSES 1043 (1105)
Q Consensus 1024 i~MP~md-----G~e~~~~IR~~~~ 1043 (1105)
.--|... .-|+.+.+++.-.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~ 177 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALN 177 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhC
Confidence 8655432 2356666666433
No 354
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=23.93 E-value=6.2e+02 Score=30.28 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=68.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+. ..+..+
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~dl 51 (457)
T PRK11361 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA----------------------------------DIHPDV 51 (457)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh----------------------------------cCCCCE
Confidence 4566677777777777777777766555444333222111 123467
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
+++|..++++++....+.++.. .....+ ++..............+.|..-++.||+....+...+....
T Consensus 52 illD~~~p~~~g~~ll~~i~~~---~~~~pv-I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 52 VLMDIRMPEMDGIKALKEMRSH---ETRTPV-ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred EEEeCCCCCCCHHHHHHHHHhc---CCCCCE-EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 8899999988765443333221 112222 23333333344556677888899999999888877766543
No 355
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=23.85 E-value=2.7e+02 Score=29.83 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=44.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE--EcCCCHHHHHHHHHH
Q 001298 1019 LILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL--TKPIDSERMVSTILR 1091 (1105)
Q Consensus 1019 lIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL--~KPi~~~~L~~~I~~ 1091 (1105)
|=++|...-.-..++..+.||+. ..+||++...-........|+++|+|..+ ..-+..+.+...+..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~------v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA------VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh------cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 34455544444568888999874 25899987655566678889999999998 333444455444443
No 356
>PRK04457 spermidine synthase; Provisional
Probab=23.84 E-value=5.2e+02 Score=28.87 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcC--CEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVG--ATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g--~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
+.+|..||=++.....++..+...+ ..+. ...|+.+.+... ..+||+|++|.-
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------------------~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------------------RHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------------------CCCCCEEEEeCC
Confidence 4589999999999999998876432 3343 456777665422 247999999962
Q ss_pred ----CCC-CCHHHHHHHHHcccc
Q 001298 1026 ----MPK-MDGYEATIEIRKSES 1043 (1105)
Q Consensus 1026 ----MP~-mdG~e~~~~IR~~~~ 1043 (1105)
||. +.--++.+.+++.-.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~ 168 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALS 168 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcC
Confidence 221 122477777776433
No 357
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=23.61 E-value=4.7e+02 Score=26.53 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=40.8
Q ss_pred CccEEEEcCCCCCCCHH-------HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|.++...+...+. ...+.++.. ..+||++..+-...++..++++.|+|.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG------SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc------CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 57999988877755432 334444431 358999988888779999999999998864
No 358
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.48 E-value=2.2e+02 Score=30.68 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=29.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~ 983 (1105)
.+||++|-..-+-.-+...|+++|+.+.++.+..
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~ 35 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTV 35 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3799999988888889999999999999888753
No 359
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.36 E-value=7.5e+02 Score=29.80 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEE--CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVV--PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a--~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+.+++||-|.+. +..++.+.+.. .|... -..++..+.+. ..|+.++=-.
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~-------------------------~aDv~V~pS~- 340 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYA-------------------------SGDVFVMPSE- 340 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHH-------------------------HCCEEEECCc-
Confidence 468888888765 34455555433 33332 34466666665 3677775321
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc---CCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
.+.=|+-+.+.+- ..+|||+...... .+.++. |-++++..|-+.++|..+|..++.+
T Consensus 341 ~E~~g~~vlEAmA--------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 341 SETLGFVVLEAMA--------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred ccccCcHHHHHHH--------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 1222333444333 2489986543332 233444 8999999999999999999988753
No 360
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.33 E-value=1.3e+02 Score=34.25 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
..++++|+... .++|||+..+-.+.+|..+++.+|||...
T Consensus 231 ~~v~~~~~~~~----~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 231 GNVRTFRRLLP----SEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHhcC----CCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 44455554321 25999999999999999999999998764
No 361
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=23.30 E-value=6.9e+02 Score=27.97 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=56.3
Q ss_pred HHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc---CCCCCCCHHHHHHHHHcc
Q 001298 966 CKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMPKMDGYEATIEIRKS 1041 (1105)
Q Consensus 966 ~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~~ 1041 (1105)
...-..+|.++ +.+.|.+|+-.+++. ..++|=.+ +.==.+| .+.|.++...
T Consensus 149 ~~~A~~LGm~~LVEVh~~eEl~rAl~~------------------------ga~iIGINnRdL~tf~vd-l~~t~~la~~ 203 (254)
T COG0134 149 VDRAHELGMEVLVEVHNEEELERALKL------------------------GAKIIGINNRDLTTLEVD-LETTEKLAPL 203 (254)
T ss_pred HHHHHHcCCeeEEEECCHHHHHHHHhC------------------------CCCEEEEeCCCcchheec-HHHHHHHHhh
Confidence 34445689876 568888888777752 34554111 1111112 4567777765
Q ss_pred ccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1042 ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1042 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
-+ .+..+|.-++-...++..+..++|+|+||.=
T Consensus 204 ~p----~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 204 IP----KDVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred CC----CCcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 43 2467888999999999999999999999973
No 362
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=23.25 E-value=8.4e+02 Score=25.20 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=44.9
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..+++.++......++. .. ...+.. ..............+.|.+.++.||+....+...+.....
T Consensus 44 ~~dlvi~d~~~~~~~g~~~~~~l~~---~~-~~~ii~-ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 44 DYALIILDIMLPGMDGWQILQTLRT---AK-QTPVIC-LTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHc---CC-CCCEEE-EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 3467888998888876544333332 11 122222 2222333344555667888999999999988887776554
No 363
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=23.20 E-value=6.7e+02 Score=29.69 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEE---------------EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATV---------------SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPD 1013 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v---------------~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1105)
+.+++||-|.+.-...+..++++.|... ..+..-.+.-+.+.
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----------------------- 318 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----------------------- 318 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH-----------------------
Confidence 4678899998865466778888877643 22222234444443
Q ss_pred CCCccEEEEcCCC-C--CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHH-hcCCCEEEEcCCCHHHHHHHH
Q 001298 1014 TPRFDLILMDCQM-P--KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLTKPIDSERMVSTI 1089 (1105)
Q Consensus 1014 ~~~~DlIlmDi~M-P--~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KPi~~~~L~~~I 1089 (1105)
.-|++++=-.. + +++-+|+. . ..+|||+--......+..+.+ +. +++..|-+.++|.++|
T Consensus 319 --~aDi~~v~~S~~e~~g~~~lEAm---a--------~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l 382 (425)
T PRK05749 319 --IADIAFVGGSLVKRGGHNPLEPA---A--------FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAV 382 (425)
T ss_pred --hCCEEEECCCcCCCCCCCHHHHH---H--------hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHH
Confidence 36886662111 1 22334443 2 248998632222333333333 33 4677788999999999
Q ss_pred HHHhhc
Q 001298 1090 LRLTKN 1095 (1105)
Q Consensus 1090 ~~l~~~ 1095 (1105)
..++.+
T Consensus 383 ~~ll~~ 388 (425)
T PRK05749 383 TYLLTD 388 (425)
T ss_pred HHHhcC
Confidence 988753
No 364
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.18 E-value=95 Score=33.07 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=31.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHH
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEAL 989 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l 989 (1105)
|||||.....-.-+...|+++|+++.+..+.+..++.+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~ 39 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI 39 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH
Confidence 89999999999999999999999999988775444444
No 365
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=23.08 E-value=4.5e+02 Score=31.29 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+..++...|.....+.+...+...+. ...+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~D 51 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR----------------------------------EQVFD 51 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh----------------------------------cCCCC
Confidence 34667777777788888888887766554443332221110 12346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..++++++..+...++.. .....+++ ..............+.|...++.||+....+...+.....
T Consensus 52 lvilD~~m~~~~G~~~~~~ir~~---~~~~~vi~-lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 52 LVLCDVRMAEMDGIATLKEIKAL---NPAIPVLI-MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhh---CCCCeEEE-EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 78899999988775544444321 12222223 3333333344455667778889999999988888766543
No 366
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.96 E-value=3.2e+02 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.8
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
++.+++||+..+ .++|||+..+-.+.++..+++++|||...
T Consensus 230 ~~~v~~i~~~~~----~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQ----LDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcC----CCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 566777776421 25999999999999999999999998654
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.82 E-value=5.7e+02 Score=28.75 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=58.0
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHH---H-HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001298 948 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGL---Q-AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020 (1105)
Q Consensus 948 ~g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~---e-Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI 1020 (1105)
.|.+|++++-|.. .++.+....+..|..+.....+. + +.+.+... ....||+|
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------------------~~~~~D~V 158 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------------------KARNIDVV 158 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------------------HHCCCCEE
Confidence 3579999997652 34455566677786665544332 1 22333221 02469999
Q ss_pred EEcCCCCCCCH--HHHHHHHHccccc-----cCCCCcceEEEeccCCHHHHHHHH----hcCCCEEEEcCCC
Q 001298 1021 LMDCQMPKMDG--YEATIEIRKSESE-----HGARNIPIVALTAHAMNADEKKCL----GVGMNAYLTKPID 1081 (1105)
Q Consensus 1021 lmDi~MP~mdG--~e~~~~IR~~~~~-----~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~KPi~ 1081 (1105)
|.|. |+... -+...++++.... ...++-.++++.+....++...+. .+|.+..+.--++
T Consensus 159 iIDT--~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlD 228 (272)
T TIGR00064 159 LIDT--AGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLD 228 (272)
T ss_pred EEeC--CCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccC
Confidence 9997 33322 2223333322110 011344577888876554444332 2567776654444
No 368
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.09 E-value=4.6e+02 Score=22.42 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001298 378 SVCILVIGCICILILT 393 (1105)
Q Consensus 378 ~~~i~li~~~~~~~l~ 393 (1105)
+++.+++|+++++++.
T Consensus 24 il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556777666543
No 369
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=21.77 E-value=89 Score=30.61 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=41.6
Q ss_pred CC-cccccccccCCCCCCC-cccccccccCCCCcceeeeeeeccc--CcccccccccccCCCCCCCcEEEEEEeeccchh
Q 001298 171 DP-ITGEKIGKASPIPPDD-LINIAGISQVPDGVASWHVAVSKFT--NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSS 246 (1105)
Q Consensus 171 ~~-~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~ 246 (1105)
|+ .|||++|.|....... +.+-.+ ...+-..|...+ +..+-+.+..+.|. +|.++|..++..-.+.
T Consensus 39 Ng~vsgR~vGdp~t~~~l~~l~~~~~-------~~~~~~nY~~~~~~Gk~lrSsT~~Ird~---~g~~iG~LCIN~D~s~ 108 (118)
T PF08348_consen 39 NGHVSGRKVGDPITDLALELLKEKQY-------EEDYIINYKTKTKDGKILRSSTFFIRDE---NGKLIGALCINFDISA 108 (118)
T ss_pred CCCccCCccCCchhHHHHHHHhcccc-------CCCccccccccCCCCCEEEEEEEEEECC---CCCEEEEEEEEeccHH
Confidence 55 8999999887544222 111111 111111221222 45566777889986 8899999999876665
Q ss_pred HHHHH
Q 001298 247 VGQLM 251 (1105)
Q Consensus 247 i~~~l 251 (1105)
+..+.
T Consensus 109 ~~~~~ 113 (118)
T PF08348_consen 109 LEQAQ 113 (118)
T ss_pred HHHHH
Confidence 55443
No 370
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.70 E-value=4.3e+02 Score=31.23 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC-------CC--H
Q 001298 963 IVACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-------MD--G 1031 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~-------md--G 1031 (1105)
..+...+++.+..|.. +.+.+.|.++++. ..|.|.... -|+ .. |
T Consensus 177 ~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~a------------------------GAD~V~VG~-G~Gs~~~t~~~~g~g 231 (368)
T PRK08649 177 LNLKEFIYELDVPVIVGGCVTYTTALHLMRT------------------------GAAGVLVGI-GPGAACTSRGVLGIG 231 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc------------------------CCCEEEECC-CCCcCCCCcccCCCC
Confidence 3356667777777665 6788888877752 467765542 222 11 2
Q ss_pred HHHHHHHHcc-------ccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1032 YEATIEIRKS-------ESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1032 ~e~~~~IR~~-------~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+-....|++. ..+.+..++|||+=-+-....|..+|+.+|||..+.
T Consensus 232 ~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 232 VPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred cCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 2222222211 011111359999999999999999999999998864
No 371
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.68 E-value=7.9e+02 Score=29.06 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=37.2
Q ss_pred CCccEEEEcCC-------CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1015 PRFDLILMDCQ-------MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1015 ~~~DlIlmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
...|+|.++-. ++.-+-.++.+.+++ .++|||+ -.-.+.++..+++++|+|..+.
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-------~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-------LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-------CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 36899999653 222244555555553 2489988 4446677888999999999865
No 372
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.63 E-value=2.8e+02 Score=33.73 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=40.0
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE
Q 001298 1016 RFDLILMDCQMPK-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL 1076 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1076 (1105)
.+|+|.+|+.-+. ..-.+++++||+. ++++|||+ -.-.+.++...+.++|+|...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~-----~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKT-----YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHh-----CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 6999999984432 2356778888864 24688888 334566788899999999984
No 373
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=21.60 E-value=3.6e+02 Score=29.42 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCCC-H--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1017 FDLILMDCQMPKMD-G--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1017 ~DlIlmDi~MP~md-G--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-.+|++|+.=-++. | +|+++++++.. ++|+|+--+-.+.+|..++.+.|+++.+.
T Consensus 162 ~~ii~tdi~~dGt~~G~d~~~~~~l~~~~------~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 162 GEIILTDIDRDGTMQGPDLELLKQLAEAV------NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp SEEEEEETTTTTTSSS--HHHHHHHHHHH------SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cEEEEeeccccCCcCCCCHHHHHHHHHHc------CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 46899999765432 3 67888887642 48999999999999999999999999875
No 374
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=21.49 E-value=5.8e+02 Score=22.68 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=43.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHHHHHH
Q 001298 430 MSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEELVDM 509 (1105)
Q Consensus 430 ~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~v~~~ 509 (1105)
+.|=+|+=|..|.+++.+-... ..+++.+..+..+..-...+. ++.+.|--+ + ....+|+.+.+++++..
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~-~~~~e~~~~L~~~~~RI~aia-~vh~~L~~~----~----~~~~v~l~~yl~~L~~~ 71 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARR-SEDPEAREALEDAQNRIQAIA-LVHEQLYQS----E----DLSEVDLREYLEELCED 71 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHHHHHhcC----C----CCCeecHHHHHHHHHHH
Confidence 5689999999999999875433 334554444444433333222 233332211 1 23579999999999876
Q ss_pred HH
Q 001298 510 FS 511 (1105)
Q Consensus 510 ~~ 511 (1105)
+.
T Consensus 72 l~ 73 (76)
T PF07568_consen 72 LR 73 (76)
T ss_pred HH
Confidence 54
No 375
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.41 E-value=3.6e+02 Score=29.78 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=48.1
Q ss_pred Ccc-EEEEcCCC-CCCCH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc-CCCEEEE------cCCCHHH
Q 001298 1016 RFD-LILMDCQM-PKMDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLT------KPIDSER 1084 (1105)
Q Consensus 1016 ~~D-lIlmDi~M-P~mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~------KPi~~~~ 1084 (1105)
.++ +|++|+.= ..+.| +++++++++. ..+|||+--+-.+.++..++++. |+|+.+. .-++.++
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~------~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~ 239 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDA------VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGE 239 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHH
Confidence 454 67766541 11222 6777888764 24899999999999999999985 9998887 4566666
Q ss_pred HHHHHH
Q 001298 1085 MVSTIL 1090 (1105)
Q Consensus 1085 L~~~I~ 1090 (1105)
+.+.+.
T Consensus 240 ~~~~~~ 245 (253)
T PRK02083 240 LKAYLA 245 (253)
T ss_pred HHHHHH
Confidence 655543
No 376
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=21.30 E-value=1.3e+03 Score=26.82 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
+++++..+++. .++|||+-.+--...|..+|+.+|||.++.=
T Consensus 186 ~l~ai~ev~~a------~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 186 QLAALRWCAKA------ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHHh------cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 35677777752 3589999999999999999999999998763
No 377
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=21.00 E-value=5e+02 Score=29.96 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=33.6
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHh-cCCCEEEE
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLG-VGMNAYLT 1077 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~ 1077 (1105)
++.+++|++. .++|||+.-+-.+.++..++++ .|+|..+.
T Consensus 183 ~~~i~~ik~~------~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 183 YDSIRAVKQK------VSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hHHHHHHHHh------cCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 7888888863 3599999998889999999997 69998764
No 378
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.99 E-value=3.4e+02 Score=30.79 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
...+.+-+||.++++. .+|+|++| +|+.-+=-++.+.++ ...| +..
T Consensus 198 eVEv~tleea~ea~~~------------------------gaDiI~LD-n~s~e~l~~av~~~~--------~~~~-lea 243 (281)
T PRK06106 198 EVEVDTLDQLEEALEL------------------------GVDAVLLD-NMTPDTLREAVAIVA--------GRAI-TEA 243 (281)
T ss_pred EEEeCCHHHHHHHHHc------------------------CCCEEEeC-CCCHHHHHHHHHHhC--------CCce-EEE
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...+..+.|+|-.-+
T Consensus 244 SGGI~~~ni~~yA~tGVD~Is~ 265 (281)
T PRK06106 244 SGRITPETAPAIAASGVDLISV 265 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.98 E-value=6.3e+02 Score=29.92 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=55.3
Q ss_pred CEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC-
Q 001298 950 LRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ- 1025 (1105)
Q Consensus 950 ~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~- 1025 (1105)
.+|.++..+.. -.+.++.+-+.+|..+..+.++.+....+.+. ..+|+||+|.-
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l----------------------~~~DlVLIDTaG 225 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL----------------------RNKHMVLIDTIG 225 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh----------------------cCCCEEEEcCCC
Confidence 36777776654 34556666677888888888877765555432 36899999974
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHH
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1066 (1105)
+...|.. +.+++...... ..+.-.+++++|....++...
T Consensus 226 ~~~~d~~-l~e~La~L~~~-~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 226 MSQRDRT-VSDQIAMLHGA-DTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred CCcccHH-HHHHHHHHhcc-CCCCeEEEEecCccChHHHHH
Confidence 3333332 33344433111 112234788888777665443
No 380
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=20.95 E-value=4.2e+02 Score=29.46 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCC--EEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGA--TVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~--~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
-+|.-+|-++.....++..+++.|+ .|. ...+..+.+..+... .....+||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~------------------~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED------------------GKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc------------------cccCCcccEEEecCC
Confidence 4899999999999999999999985 233 345555555544210 001247999999987
No 381
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.82 E-value=2.5e+02 Score=31.29 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHH-hcCCCEEEE
Q 001298 1018 DLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCL-GVGMNAYLT 1077 (1105)
Q Consensus 1018 DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~ 1077 (1105)
.++++|+.--++ .| +++++++++. ..+|||+--+-.+.++..+++ +.|+|+.+.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~------~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA------LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 488887754322 23 7788888863 359999999999999999999 799997653
No 382
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.79 E-value=4.2e+02 Score=28.92 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=42.0
Q ss_pred Ccc-EEEEcCCCCC-CCH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFD-LILMDCQMPK-MDG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~-mdG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+| +++.|+.--. ..| ++++++|++. ..+||++--+-.+.++..++++.|++..+.
T Consensus 40 G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~------~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 40 GADELVFLDITASSEGRETMLDVVERVAEE------VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCEEEEEcCCcccccCcccHHHHHHHHHh------CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 455 8888887421 122 6778888864 248999999999999999999999987765
No 383
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.71 E-value=3.3e+02 Score=31.11 Aligned_cols=68 Identities=13% Similarity=-0.015 Sum_probs=48.0
Q ss_pred EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEE
Q 001298 976 VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVAL 1055 (1105)
Q Consensus 976 v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIal 1055 (1105)
.+.+++-+||.++++. .+|+|++|-+-|. +=-++.+.++. -.++-.
T Consensus 209 eVEvetleea~eA~~a------------------------GaDiImLDnmspe-~l~~av~~~~~---------~~~lEa 254 (294)
T PRK06978 209 QIEVETLAQLETALAH------------------------GAQSVLLDNFTLD-MMREAVRVTAG---------RAVLEV 254 (294)
T ss_pred EEEcCCHHHHHHHHHc------------------------CCCEEEECCCCHH-HHHHHHHhhcC---------CeEEEE
Confidence 4668899999999863 6999999964433 22333333321 246778
Q ss_pred eccCCHHHHHHHHhcCCCEEEE
Q 001298 1056 TAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1056 Ta~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++.-..+...+..+.|+|-.-+
T Consensus 255 SGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred ECCCCHHHHHHHHhcCCCEEEe
Confidence 8888999999999999986543
No 384
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=20.60 E-value=5.9e+02 Score=29.68 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-HHHHHHHHccccccCCC
Q 001298 970 EKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-YEATIEIRKSESEHGAR 1048 (1105)
Q Consensus 970 ~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~ 1048 (1105)
...++-...+.-..+-++.+....+. ...+|+|++|+-=--... .+.+++||+..+.
T Consensus 93 ~~~~~~~vsvG~~~~d~er~~~L~~a------------------~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~---- 150 (343)
T TIGR01305 93 DCLQNVAVSSGSSDNDLEKMTSILEA------------------VPQLKFICLDVANGYSEHFVEFVKLVREAFPE---- 150 (343)
T ss_pred cccceEEEEeccCHHHHHHHHHHHhc------------------CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCC----
Q ss_pred CcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+.|+--.-...++...++++|||....
T Consensus 151 --~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 151 --HTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred --CeEEEecccCHHHHHHHHHcCCCEEEE
No 385
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.53 E-value=5.2e+02 Score=28.26 Aligned_cols=106 Identities=16% Similarity=0.283 Sum_probs=65.0
Q ss_pred HHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHH-------HHHH
Q 001298 965 ACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYE-------ATIE 1037 (1105)
Q Consensus 965 l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e-------~~~~ 1037 (1105)
+...+++.|..+-.|-|...-++.+.... ...|+|+.=.-=|+-.|-. =.++
T Consensus 102 ~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---------------------~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 102 TIQLIKSHGCQAGLVLNPATPVDILDWVL---------------------PELDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred HHHHHHHCCCceeEEeCCCCCHHHHHHHH---------------------hhcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 34666778888887776665555554332 2477666544457766633 3344
Q ss_pred HHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE-----EcCCCHHHHHHHHHHHh
Q 001298 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL-----TKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1038 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KPi~~~~L~~~I~~l~ 1093 (1105)
+|+...+.+ . -..|.+-+.-..+...+|.++|+|-++ .|.-++.+-...+++.+
T Consensus 161 l~~~~~~~~-~-~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 161 IRKKIDALG-K-PIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHhcC-C-CeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 444422221 1 245888999999999999999999654 44445555555555443
No 386
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.47 E-value=1e+03 Score=25.07 Aligned_cols=95 Identities=20% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCEEEEE-CCH----HHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC-------C
Q 001298 963 IVACKILEKVGATVSVV-PDG----LQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM-------D 1030 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~a-~ng----~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m-------d 1030 (1105)
..+....++.|..+... .+. +++..+.+ ...|+|-+. |+. .
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~------------------------~g~d~v~~~---pg~~~~~~~~~ 144 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE------------------------LGADYIGVH---TGLDEQAKGQN 144 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH------------------------cCCCEEEEc---CCcCcccCCCC
Confidence 44555566788887765 344 33333332 257888664 332 2
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTIL 1090 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~ 1090 (1105)
+++..+++++..+ . +.|++++--..+....++++|+|.++. +.-++.+....++
T Consensus 145 ~~~~i~~l~~~~~-----~-~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 145 PFEDLQTILKLVK-----E-ARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred CHHHHHHHHHhcC-----C-CcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 4555666665322 2 346667777888899999999997766 4445555544444
No 387
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=20.43 E-value=6.1e+02 Score=26.92 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=59.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh--cCC-------------EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEK--VGA-------------TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT 1014 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~--~g~-------------~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1105)
.+..||..-+..|+++.+++.. .|+ .|..+.+-++|++.+.+. ..
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------------------~G 102 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------------------EG 102 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------------------HS
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------------------hC
Confidence 3789999999999999999874 232 388999999999998754 24
Q ss_pred CCccEEEEcCC-CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCC
Q 001298 1015 PRFDLILMDCQ-MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID 1081 (1105)
Q Consensus 1015 ~~~DlIlmDi~-MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~ 1081 (1105)
..|-+|-+|-. -|..=+|+.+|+.-.... ..+-|++=|+....++..+ ..||+..|+.
T Consensus 103 ~~P~~v~TsAr~~~~~is~~~lr~~l~~~~----~P~LllFGTGwGL~~ev~~-----~~D~iLePI~ 161 (185)
T PF09936_consen 103 KRPLLVATSARKYPNTISYAELRRMLEEED----RPVLLLFGTGWGLAPEVME-----QCDYILEPIR 161 (185)
T ss_dssp S--EEEE--SS--SS-B-HHHHHHHHHH------S-EEEEE--TT---HHHHT-----T-SEEB--TT
T ss_pred CCCEEEEecCcCCCCCcCHHHHHHHHhccC----CeEEEEecCCCCCCHHHHH-----hcCeeEcccc
Confidence 68999999998 566667877766542211 1233455588887776543 3468888974
No 388
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.22 E-value=2.1e+02 Score=32.35 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
.++.+.+|+..+ +-.+|.++.++. ++..++.++|+|.....++.++.|...+..+
T Consensus 175 ~~~v~~aR~~~~-----~~~~Igvsv~tl-eea~~A~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 175 TKAVTSVREKLG-----HMVKIEVETETE-EQVREAVAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 456677776532 235799999865 5677889999999999999999988877643
No 389
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.15 E-value=1e+03 Score=26.50 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=31.8
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP 1079 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1079 (1105)
-.+.++++|+.. ..||++=-+-.+.++..++.++|+|.++.--
T Consensus 186 ~~~~i~~lr~~~------~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYS------AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhc------CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 367777888642 3687664445568899999999999999864
No 390
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=20.06 E-value=1e+03 Score=24.95 Aligned_cols=74 Identities=9% Similarity=0.040 Sum_probs=45.4
Q ss_pred cEEEEEEeecccc---ChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDL---SSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+++. ++....+.++ .......+..+ .............+.|...++.||.....+...+..+..
T Consensus 50 ~DlvllD~~l~~~~~~~g~~~~~~l~---~~~~~~~iIvl-s~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 50 AHVLITDLSMPGDKYGDGITLIKYIK---RHFPSLSIIVL-TMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCEEEEeCcCCCCCCCCHHHHHHHHH---HHCCCCcEEEE-EecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 4678889888874 4432222222 11122223323 223333444566778999999999999999998888765
Q ss_pred c
Q 001298 856 G 856 (1105)
Q Consensus 856 ~ 856 (1105)
+
T Consensus 126 g 126 (216)
T PRK10840 126 G 126 (216)
T ss_pred C
Confidence 4
No 391
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.06 E-value=3e+02 Score=29.08 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=28.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHH
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGL 983 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~ 983 (1105)
|+|+|=-.-|-..+.+.|++.|+.+..+.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888889999999999999999998754
Done!