Query 001298
Match_columns 1105
No_of_seqs 651 out of 5506
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 2E-38 6.7E-43 348.3 31.3 233 414-686 11-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 3.4E-33 1.2E-37 307.6 32.9 227 414-687 31-258 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 1.3E-34 4.5E-39 309.0 14.1 216 423-686 2-218 (222)
4 2e0a_A Pyruvate dehydrogenase 100.0 9.3E-33 3.2E-37 323.0 26.9 220 424-686 96-351 (394)
5 2btz_A Pyruvate dehydrogenase 100.0 1.1E-32 3.7E-37 322.5 24.9 219 425-686 97-351 (394)
6 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.9E-32 6.6E-37 319.7 23.7 226 418-686 116-374 (388)
7 2q8g_A [pyruvate dehydrogenase 100.0 2.9E-32 1E-36 320.1 23.7 219 426-686 108-364 (407)
8 3d36_A Sporulation kinase B; G 100.0 2.1E-31 7E-36 288.4 23.4 216 420-687 11-227 (244)
9 1y8o_A [pyruvate dehydrogenase 100.0 1.1E-31 3.9E-36 316.2 23.2 220 424-686 119-375 (419)
10 3a0r_A Sensor protein; four he 100.0 3.8E-31 1.3E-35 301.9 22.2 216 420-686 129-346 (349)
11 4fpp_A Phosphotransferase; fou 100.0 9.5E-30 3.2E-34 278.6 22.8 195 426-683 49-246 (247)
12 1b3q_A Protein (chemotaxis pro 99.9 2.6E-26 8.8E-31 266.9 18.2 202 421-686 8-249 (379)
13 3to5_A CHEY homolog; alpha(5)b 99.9 4.9E-26 1.7E-30 225.3 17.4 122 948-1095 11-133 (134)
14 1id0_A PHOQ histidine kinase; 99.9 4.5E-23 1.5E-27 206.9 19.6 145 495-686 2-146 (152)
15 1ysr_A Sensor-type histidine k 99.9 3.4E-23 1.2E-27 207.7 18.7 146 493-685 4-149 (150)
16 3ehh_A Sensor kinase (YOCF pro 99.9 8.8E-23 3E-27 217.5 21.1 190 421-685 26-216 (218)
17 3mm4_A Histidine kinase homolo 99.9 3.3E-23 1.1E-27 220.0 16.1 137 948-1097 60-198 (206)
18 3sl2_A Sensor histidine kinase 99.9 1.6E-22 5.4E-27 209.0 17.0 151 496-686 2-153 (177)
19 3a0y_A Sensor protein; ATP-LID 99.9 3.5E-22 1.2E-26 200.0 18.9 147 492-686 1-149 (152)
20 1bxd_A ENVZ(290-450), protein 99.9 2.7E-22 9.4E-27 203.7 16.6 149 491-687 4-152 (161)
21 1r62_A Nitrogen regulation pro 99.9 2.8E-22 9.5E-27 202.3 15.0 156 491-685 2-159 (160)
22 3luf_A Two-component system re 99.9 7.8E-21 2.7E-25 209.3 27.2 200 778-1097 48-247 (259)
23 2lpm_A Two-component response 99.9 2.6E-23 9.1E-28 202.3 2.2 115 948-1095 7-122 (123)
24 1i58_A Chemotaxis protein CHEA 99.9 1.4E-21 4.7E-26 204.1 12.4 150 494-684 2-188 (189)
25 3gl9_A Response regulator; bet 99.8 2.8E-20 9.4E-25 179.7 17.5 119 950-1094 3-121 (122)
26 3t6k_A Response regulator rece 99.8 8.3E-20 2.8E-24 179.8 18.3 125 949-1099 4-128 (136)
27 2ayx_A Sensor kinase protein R 99.8 1.1E-18 3.6E-23 191.5 28.1 121 948-1096 128-248 (254)
28 2r25_B Osmosensing histidine p 99.8 1.5E-19 5.1E-24 177.3 17.7 126 950-1097 3-129 (133)
29 3n0r_A Response regulator; sig 99.8 1.4E-20 4.7E-25 210.4 11.0 120 949-1099 160-281 (286)
30 3f6p_A Transcriptional regulat 99.8 1.9E-19 6.6E-24 173.1 17.3 117 950-1095 3-119 (120)
31 3h1g_A Chemotaxis protein CHEY 99.8 1.9E-19 6.6E-24 175.2 17.5 124 948-1096 4-128 (129)
32 3m6m_D Sensory/regulatory prot 99.8 2.4E-19 8E-24 178.3 17.0 127 947-1097 12-138 (143)
33 3rqi_A Response regulator prot 99.8 4E-19 1.4E-23 184.7 12.1 119 948-1094 6-124 (184)
34 1dbw_A Transcriptional regulat 99.8 5.8E-18 2E-22 163.7 18.2 121 949-1097 3-123 (126)
35 3gt7_A Sensor protein; structu 99.8 4.1E-18 1.4E-22 171.4 17.8 123 949-1097 7-129 (154)
36 1mb3_A Cell division response 99.8 3.2E-18 1.1E-22 164.4 16.1 121 950-1096 2-122 (124)
37 3ehg_A Sensor kinase (YOCF pro 99.8 1.4E-18 4.7E-23 170.0 12.9 125 497-685 2-126 (128)
38 3zxo_A Redox sensor histidine 99.8 2.5E-18 8.6E-23 167.6 14.7 125 495-685 3-128 (129)
39 2pl1_A Transcriptional regulat 99.8 8.7E-18 3E-22 160.6 18.0 119 950-1096 1-119 (121)
40 1srr_A SPO0F, sporulation resp 99.8 6.2E-18 2.1E-22 162.8 16.9 119 950-1096 4-122 (124)
41 3crn_A Response regulator rece 99.8 6.7E-18 2.3E-22 164.9 17.2 118 950-1095 4-121 (132)
42 1tmy_A CHEY protein, TMY; chem 99.8 8.5E-18 2.9E-22 160.7 16.9 116 950-1093 3-119 (120)
43 1jbe_A Chemotaxis protein CHEY 99.8 8.6E-18 3E-22 162.5 17.1 121 949-1095 4-125 (128)
44 3lua_A Response regulator rece 99.8 4.4E-18 1.5E-22 167.7 14.5 126 949-1099 4-131 (140)
45 2a9o_A Response regulator; ess 99.8 1.5E-17 5.2E-22 158.5 17.7 117 950-1095 2-118 (120)
46 1dcf_A ETR1 protein; beta-alph 99.8 1.2E-17 4E-22 163.8 17.3 126 948-1097 6-131 (136)
47 1zgz_A Torcad operon transcrip 99.8 1.5E-17 5.1E-22 159.4 17.8 118 950-1096 3-120 (122)
48 3r0j_A Possible two component 99.8 8.9E-18 3E-22 183.2 18.3 121 948-1096 22-142 (250)
49 3b2n_A Uncharacterized protein 99.8 1.2E-17 4.1E-22 163.4 16.8 122 950-1099 4-127 (133)
50 1xhf_A DYE resistance, aerobic 99.8 1.6E-17 5.5E-22 159.4 17.3 117 950-1095 4-120 (123)
51 3eod_A Protein HNR; response r 99.8 9.4E-18 3.2E-22 162.9 15.4 121 948-1096 6-127 (130)
52 3hzh_A Chemotaxis response reg 99.8 1.4E-17 4.8E-22 168.0 16.9 122 948-1095 35-157 (157)
53 3grc_A Sensor protein, kinase; 99.7 6.6E-18 2.2E-22 166.2 14.1 123 949-1097 6-129 (140)
54 3heb_A Response regulator rece 99.7 1.8E-17 6.1E-22 165.8 17.5 129 949-1094 4-134 (152)
55 1i3c_A Response regulator RCP1 99.7 2.2E-17 7.5E-22 164.9 17.9 128 949-1095 8-137 (149)
56 1dz3_A Stage 0 sporulation pro 99.7 1.2E-17 4.3E-22 162.2 15.7 122 950-1098 3-126 (130)
57 1p6q_A CHEY2; chemotaxis, sign 99.7 7.3E-18 2.5E-22 163.3 14.0 121 949-1095 6-127 (129)
58 3i42_A Response regulator rece 99.7 7.2E-18 2.5E-22 163.0 13.4 120 950-1096 4-123 (127)
59 3hdv_A Response regulator; PSI 99.7 3E-17 1E-21 160.7 17.8 123 949-1097 7-129 (136)
60 3hv2_A Response regulator/HD d 99.7 2.2E-17 7.5E-22 165.5 17.3 120 948-1095 13-133 (153)
61 4dad_A Putative pilus assembly 99.7 6.6E-18 2.2E-22 167.6 13.0 123 948-1097 19-143 (146)
62 3c3m_A Response regulator rece 99.7 2.2E-17 7.5E-22 162.6 16.6 122 950-1097 4-125 (138)
63 2qzj_A Two-component response 99.7 1.9E-17 6.5E-22 162.9 16.2 117 950-1095 5-121 (136)
64 3kht_A Response regulator; PSI 99.7 1.9E-17 6.6E-22 163.9 16.0 121 949-1095 5-128 (144)
65 3kto_A Response regulator rece 99.7 7.2E-18 2.4E-22 165.6 12.4 122 949-1098 6-129 (136)
66 3cfy_A Putative LUXO repressor 99.7 2.3E-17 7.8E-22 162.5 15.7 118 950-1095 5-122 (137)
67 1mvo_A PHOP response regulator 99.7 3.4E-17 1.2E-21 160.1 16.8 120 950-1097 4-123 (136)
68 3nhm_A Response regulator; pro 99.7 2E-17 6.8E-22 161.1 15.0 121 949-1097 4-124 (133)
69 1k68_A Phytochrome response re 99.7 4.7E-17 1.6E-21 159.1 17.7 129 949-1096 2-132 (140)
70 4e7p_A Response regulator; DNA 99.7 3.1E-17 1.1E-21 163.8 16.6 122 948-1097 19-142 (150)
71 3f6c_A Positive transcription 99.7 1.6E-17 5.5E-22 162.0 13.9 121 950-1098 2-123 (134)
72 3ilh_A Two component response 99.7 3.6E-17 1.2E-21 161.5 16.5 130 949-1097 9-141 (146)
73 3hdg_A Uncharacterized protein 99.7 2.2E-17 7.6E-22 161.8 14.7 120 949-1096 7-126 (137)
74 1zh2_A KDP operon transcriptio 99.7 3.5E-17 1.2E-21 156.3 15.6 118 950-1096 2-119 (121)
75 3cnb_A DNA-binding response re 99.7 7.6E-17 2.6E-21 158.6 18.4 124 949-1098 8-133 (143)
76 3jte_A Response regulator rece 99.7 6.9E-17 2.3E-21 159.5 18.0 120 950-1095 4-123 (143)
77 3h5i_A Response regulator/sens 99.7 1.3E-17 4.6E-22 164.5 12.7 119 949-1095 5-124 (140)
78 3dzd_A Transcriptional regulat 99.7 8.8E-18 3E-22 194.2 13.1 118 951-1096 2-119 (368)
79 2jba_A Phosphate regulon trans 99.7 1.2E-17 4.2E-22 161.0 12.0 122 950-1097 3-124 (127)
80 3snk_A Response regulator CHEY 99.7 3.3E-18 1.1E-22 167.6 8.0 119 949-1095 14-133 (135)
81 3eul_A Possible nitrate/nitrit 99.7 7E-17 2.4E-21 161.5 17.8 123 947-1097 13-137 (152)
82 3zxq_A Hypoxia sensor histidin 99.7 3.5E-17 1.2E-21 158.4 14.8 122 498-685 2-123 (124)
83 2zay_A Response regulator rece 99.7 4E-17 1.4E-21 162.0 15.4 124 948-1097 7-130 (147)
84 3lte_A Response regulator; str 99.7 7.3E-17 2.5E-21 156.8 16.6 122 949-1097 6-127 (132)
85 1k66_A Phytochrome response re 99.7 6.4E-17 2.2E-21 160.1 16.5 131 948-1096 5-139 (149)
86 3q9s_A DNA-binding response re 99.7 3.7E-17 1.3E-21 178.6 16.1 121 948-1097 36-156 (249)
87 3a10_A Response regulator; pho 99.7 4.9E-17 1.7E-21 154.4 13.4 114 950-1093 2-115 (116)
88 1a04_A Nitrate/nitrite respons 99.7 1.2E-16 4E-21 169.7 17.3 119 950-1096 6-126 (215)
89 1yio_A Response regulatory pro 99.7 4.5E-17 1.6E-21 171.9 13.9 119 949-1095 4-122 (208)
90 3kcn_A Adenylate cyclase homol 99.7 1.3E-16 4.4E-21 159.5 16.4 119 949-1095 4-123 (151)
91 2qxy_A Response regulator; reg 99.7 9.8E-17 3.3E-21 158.2 15.2 122 949-1099 4-125 (142)
92 3n53_A Response regulator rece 99.7 4.8E-17 1.6E-21 160.2 12.6 119 950-1095 4-122 (140)
93 3cg0_A Response regulator rece 99.7 2.7E-16 9.1E-21 154.3 17.3 120 948-1096 8-129 (140)
94 1s8n_A Putative antiterminator 99.7 1.2E-16 3.9E-21 168.6 15.3 117 950-1095 14-131 (205)
95 1w25_A Stalked-cell differenti 99.7 1.3E-16 4.6E-21 189.5 17.5 119 950-1094 2-120 (459)
96 2qr3_A Two-component system re 99.7 2.7E-16 9.4E-21 154.2 16.7 121 949-1097 3-128 (140)
97 1kgs_A DRRD, DNA binding respo 99.7 1.4E-16 4.9E-21 170.0 15.8 119 950-1096 3-121 (225)
98 2rjn_A Response regulator rece 99.7 2.5E-16 8.4E-21 157.9 16.5 119 948-1094 6-125 (154)
99 3cg4_A Response regulator rece 99.7 6.7E-17 2.3E-21 159.2 12.1 123 948-1096 6-128 (142)
100 3eq2_A Probable two-component 99.7 4.7E-17 1.6E-21 189.8 12.5 117 950-1094 6-123 (394)
101 3c97_A Signal transduction his 99.7 1.2E-16 4E-21 157.6 12.7 122 950-1097 11-132 (140)
102 2jk1_A HUPR, hydrogenase trans 99.7 3.1E-16 1.1E-20 154.3 15.6 117 950-1095 2-119 (139)
103 3cu5_A Two component transcrip 99.7 7.7E-17 2.6E-21 159.5 11.2 117 950-1094 3-122 (141)
104 1qkk_A DCTD, C4-dicarboxylate 99.7 3.4E-16 1.2E-20 157.0 16.0 119 949-1095 3-121 (155)
105 3cz5_A Two-component response 99.7 3.9E-16 1.3E-20 156.3 16.2 121 949-1097 5-127 (153)
106 1ny5_A Transcriptional regulat 99.7 2.4E-16 8.1E-21 183.5 16.7 117 950-1094 1-117 (387)
107 2gkg_A Response regulator homo 99.7 4.1E-16 1.4E-20 149.7 15.4 120 950-1096 6-126 (127)
108 2qvg_A Two component response 99.7 5.1E-16 1.7E-20 153.0 15.9 127 949-1095 7-135 (143)
109 1ys7_A Transcriptional regulat 99.7 1.8E-16 6E-21 170.3 13.5 120 949-1096 7-126 (233)
110 2pln_A HP1043, response regula 99.7 1E-15 3.5E-20 150.0 17.1 118 947-1096 16-134 (137)
111 2gwr_A DNA-binding response re 99.7 4E-16 1.4E-20 168.7 15.2 118 950-1096 6-123 (238)
112 3eqz_A Response regulator; str 99.7 2E-16 6.9E-21 153.9 11.1 121 949-1098 3-128 (135)
113 2oqr_A Sensory transduction pr 99.7 3.9E-16 1.3E-20 167.3 14.2 118 950-1096 5-122 (230)
114 3kyj_B CHEY6 protein, putative 99.7 2.1E-16 7E-21 156.8 10.8 111 948-1086 12-126 (145)
115 2rdm_A Response regulator rece 99.6 1.6E-15 5.6E-20 147.1 15.9 123 948-1099 4-127 (132)
116 2j48_A Two-component sensor ki 99.6 8.1E-16 2.8E-20 145.2 13.2 117 950-1095 2-118 (119)
117 2qv0_A Protein MRKE; structura 99.6 1.7E-15 5.7E-20 149.5 16.0 117 949-1095 9-127 (143)
118 3bre_A Probable two-component 99.6 4.9E-16 1.7E-20 178.2 14.0 118 950-1093 19-137 (358)
119 3t8y_A CHEB, chemotaxis respon 99.6 2.4E-15 8.1E-20 153.0 16.3 120 949-1097 25-157 (164)
120 2qsj_A DNA-binding response re 99.6 8E-16 2.7E-20 153.9 12.0 121 950-1097 4-126 (154)
121 3klo_A Transcriptional regulat 99.6 1.7E-16 5.8E-21 170.1 7.4 121 949-1097 7-131 (225)
122 2zbk_B Type 2 DNA topoisomeras 99.6 5.4E-16 1.8E-20 185.4 11.9 117 533-686 24-148 (530)
123 3c3w_A Two component transcrip 99.6 2.1E-16 7.1E-21 169.7 7.6 119 950-1096 2-122 (225)
124 1p2f_A Response regulator; DRR 99.6 1.2E-15 4.1E-20 162.5 13.4 116 950-1096 3-118 (220)
125 1mu5_A Type II DNA topoisomera 99.6 8E-16 2.7E-20 182.0 13.0 117 533-686 26-149 (471)
126 2b4a_A BH3024; flavodoxin-like 99.6 7.4E-16 2.5E-20 151.2 10.7 119 947-1096 13-132 (138)
127 3sy8_A ROCR; TIM barrel phosph 99.6 7.6E-16 2.6E-20 180.1 12.1 121 950-1097 4-130 (400)
128 1qo0_D AMIR; binding protein, 99.6 1.2E-15 4.1E-20 159.7 9.6 115 947-1094 10-124 (196)
129 1th8_A Anti-sigma F factor; SP 99.6 2.9E-15 1E-19 149.3 11.4 103 535-687 35-141 (145)
130 2hqr_A Putative transcriptiona 99.6 6.9E-15 2.3E-19 157.0 14.5 115 950-1096 1-116 (223)
131 1dc7_A NTRC, nitrogen regulati 99.6 8.9E-17 3E-21 153.9 -0.3 119 950-1096 4-122 (124)
132 1w25_A Stalked-cell differenti 99.6 2.7E-13 9.3E-18 161.0 29.0 267 702-1094 3-269 (459)
133 3luf_A Two-component system re 99.6 3.3E-15 1.1E-19 164.2 9.7 102 950-1082 5-107 (259)
134 1a2o_A CHEB methylesterase; ba 99.5 4.4E-14 1.5E-18 161.9 16.1 118 950-1096 4-134 (349)
135 2vyc_A Biodegradative arginine 99.5 1.2E-14 4E-19 182.7 9.9 119 950-1095 1-133 (755)
136 2q2e_B Type 2 DNA topoisomeras 99.3 1.2E-12 4.1E-17 158.5 10.4 114 533-685 31-154 (621)
137 3cwo_X Beta/alpha-barrel prote 98.9 5.6E-10 1.9E-14 119.4 5.9 94 974-1095 6-101 (237)
138 1kij_A DNA gyrase subunit B; t 98.4 2.3E-07 8E-12 107.2 5.8 86 534-663 31-128 (390)
139 4dah_A Sporulation kinase D; a 98.3 2.1E-06 7.1E-11 90.7 11.7 72 201-277 108-180 (217)
140 1b63_A MUTL; DNA mismatch repa 98.3 2.2E-06 7.4E-11 97.3 10.3 88 539-673 24-117 (333)
141 3li9_A Hypothetical sensory tr 98.1 1.5E-05 5.2E-10 87.9 13.9 73 200-277 134-206 (291)
142 1h7s_A PMS1 protein homolog 2; 98.1 4.9E-06 1.7E-10 95.3 9.8 87 539-672 34-126 (365)
143 3na3_A DNA mismatch repair pro 98.1 9.9E-06 3.4E-10 91.7 10.4 88 539-673 28-121 (348)
144 3lib_A Hypothetical sensory tr 98.0 8.1E-06 2.8E-10 90.0 8.7 73 200-277 133-205 (290)
145 3ke6_A Protein RV1364C/MT1410; 98.0 3.9E-06 1.3E-10 97.8 6.0 90 536-686 294-387 (399)
146 3lif_A Putative diguanylate cy 98.0 1.2E-05 4.2E-10 86.7 9.6 75 200-277 109-184 (254)
147 3zcc_A HAMP, osmolarity sensor 98.0 1.8E-05 6.1E-10 73.7 8.7 57 420-482 57-113 (114)
148 3lic_A Sensor protein; PDC fol 98.0 2.2E-05 7.7E-10 85.4 10.8 192 23-277 4-198 (274)
149 3c8c_A Methyl-accepting chemot 97.7 7E-05 2.4E-09 79.1 9.2 74 201-276 102-176 (240)
150 3cwo_X Beta/alpha-barrel prote 97.7 0.00027 9.1E-09 74.9 13.3 71 1016-1090 144-221 (237)
151 3h4l_A DNA mismatch repair pro 97.7 3.4E-05 1.2E-09 88.1 6.1 88 539-673 25-118 (367)
152 1ixm_A SPO0B, protein (sporula 97.4 0.00048 1.6E-08 71.6 10.3 140 425-635 23-170 (192)
153 3e4o_A C4-dicarboxylate transp 97.4 0.00086 2.9E-08 75.0 12.7 62 209-278 162-223 (305)
154 3lid_A Putative sensory BOX/gg 97.2 0.00087 3E-08 74.5 10.4 142 84-278 64-207 (295)
155 3zrx_A AF1503 protein, osmolar 97.1 0.00071 2.4E-08 62.5 7.3 56 423-484 60-115 (115)
156 2wer_A ATP-dependent molecular 97.1 0.00024 8.4E-09 75.6 4.2 57 612-672 74-140 (220)
157 2ayx_A Sensor kinase protein R 97.1 0.00073 2.5E-08 73.2 8.0 100 945-1095 7-106 (254)
158 1s16_A Topoisomerase IV subuni 96.8 0.0021 7.2E-08 74.1 8.2 49 612-660 64-124 (390)
159 1qy5_A Endoplasmin; GRP94, NEC 96.6 0.00044 1.5E-08 75.6 1.2 57 612-672 76-147 (269)
160 1yc1_A HSP 86, heat shock prot 96.5 0.0037 1.3E-07 68.2 7.8 57 612-672 116-182 (264)
161 2ior_A Chaperone protein HTPG; 96.5 0.0011 3.7E-08 71.3 3.0 57 612-672 95-163 (235)
162 3by9_A Sensor protein; histidi 96.2 0.0034 1.2E-07 67.2 5.3 68 201-277 114-181 (260)
163 3to5_A CHEY homolog; alpha(5)b 96.0 0.067 2.3E-06 52.1 12.8 119 700-854 12-131 (134)
164 3n75_A LDC, lysine decarboxyla 95.8 0.0059 2E-07 75.7 5.2 99 963-1091 20-119 (715)
165 3r0j_A Possible two component 95.2 0.18 6.3E-06 53.7 13.7 141 675-856 1-141 (250)
166 2gqp_A Endoplasmin; GRP94, HSP 95.1 0.0069 2.4E-07 65.0 2.0 58 612-673 80-152 (236)
167 1ei1_A DNA gyrase B, GYRB; ATP 94.9 0.037 1.3E-06 63.7 7.6 50 612-661 67-128 (391)
168 2yxb_A Coenzyme B12-dependent 94.4 0.63 2.2E-05 46.6 14.3 118 949-1094 18-144 (161)
169 3hzh_A Chemotaxis response reg 94.0 0.48 1.6E-05 46.2 12.4 119 700-854 36-155 (157)
170 3m6m_D Sensory/regulatory prot 93.9 0.67 2.3E-05 44.4 13.0 121 700-854 14-134 (143)
171 1y4s_A Chaperone protein HTPG; 93.6 0.1 3.6E-06 62.5 8.0 47 612-658 75-133 (559)
172 3q7r_A Transcriptional regulat 93.5 0.66 2.3E-05 41.9 10.8 107 950-1096 13-119 (121)
173 3fv5_A DNA topoisomerase 4 sub 93.3 0.14 4.6E-06 53.5 7.4 48 613-660 51-110 (201)
174 3peh_A Endoplasmin homolog; st 92.7 0.11 3.7E-06 56.7 5.6 57 612-672 94-161 (281)
175 2cg9_A ATP-dependent molecular 92.5 0.15 5.2E-06 62.2 7.2 22 612-633 74-95 (677)
176 3cwv_A DNA gyrase, B subunit, 92.4 0.19 6.4E-06 57.4 7.4 19 536-554 27-45 (369)
177 2ioq_A Chaperone protein HTPG; 91.9 0.11 3.7E-06 63.2 4.9 48 612-659 75-134 (624)
178 3o0i_A HSP90AA1 protein; HSP90 91.8 0.058 2E-06 58.2 2.2 56 612-672 108-174 (256)
179 3ilh_A Two component response 91.7 2.5 8.4E-05 39.9 13.6 127 701-856 10-139 (146)
180 3gl9_A Response regulator; bet 91.5 1.7 5.9E-05 40.1 12.0 117 702-854 4-120 (122)
181 3hdv_A Response regulator; PSI 91.5 2.7 9.4E-05 39.2 13.6 120 701-856 8-127 (136)
182 2o1u_A Endoplasmin; GRP94, HSP 91.4 0.12 4.2E-06 63.0 4.6 22 612-633 93-114 (666)
183 3t6k_A Response regulator rece 91.3 2.7 9.3E-05 39.6 13.4 120 701-856 5-124 (136)
184 1dcf_A ETR1 protein; beta-alph 90.8 2.2 7.4E-05 40.0 12.1 122 699-855 6-128 (136)
185 1wv2_A Thiazole moeity, thiazo 90.8 1.3 4.4E-05 47.5 11.1 96 965-1091 127-234 (265)
186 3f6p_A Transcriptional regulat 90.6 2.3 8E-05 39.0 11.9 115 702-855 4-118 (120)
187 3t0h_A Heat shock protein HSP 90.5 0.24 8.2E-06 52.6 5.2 59 612-674 80-148 (228)
188 3hv2_A Response regulator/HD d 90.3 3.2 0.00011 39.8 13.1 119 700-856 14-133 (153)
189 3eod_A Protein HNR; response r 90.2 2.2 7.4E-05 39.6 11.4 120 699-856 6-126 (130)
190 3mm4_A Histidine kinase homolo 90.2 2.3 7.9E-05 43.6 12.6 175 658-855 15-195 (206)
191 3f6c_A Positive transcription 89.6 4.2 0.00014 37.7 12.9 117 702-856 3-120 (134)
192 3grc_A Sensor protein, kinase; 89.5 2.2 7.4E-05 40.2 10.8 121 701-857 7-128 (140)
193 3nmq_A Heat shock protein HSP 89.4 0.24 8.1E-06 52.9 4.2 56 612-672 87-153 (239)
194 4emv_A DNA topoisomerase IV, B 89.4 0.58 2E-05 49.6 7.1 65 613-682 74-149 (226)
195 3gt7_A Sensor protein; structu 89.1 3.3 0.00011 39.9 12.1 120 701-856 8-127 (154)
196 4duh_A DNA gyrase subunit B; s 88.9 0.83 2.8E-05 48.2 7.9 65 613-682 69-145 (220)
197 3lte_A Response regulator; str 88.9 5.2 0.00018 36.9 13.0 119 701-856 7-125 (132)
198 1srr_A SPO0F, sporulation resp 88.6 5.4 0.00018 36.4 12.7 116 702-855 5-120 (124)
199 3hdg_A Uncharacterized protein 88.6 3.3 0.00011 38.7 11.4 119 701-857 8-126 (137)
200 1dbw_A Transcriptional regulat 88.5 6.4 0.00022 36.1 13.2 117 701-855 4-120 (126)
201 3h5i_A Response regulator/sens 88.4 4.7 0.00016 38.0 12.4 118 701-856 6-124 (140)
202 1mb3_A Cell division response 88.1 6 0.0002 36.0 12.7 118 702-855 3-120 (124)
203 3i42_A Response regulator rece 88.0 4.4 0.00015 37.2 11.7 117 701-854 4-120 (127)
204 3h1g_A Chemotaxis protein CHEY 87.9 5.1 0.00018 37.1 12.2 119 702-855 7-126 (129)
205 3jte_A Response regulator rece 87.7 6.8 0.00023 36.8 13.1 120 702-857 5-124 (143)
206 3cg4_A Response regulator rece 87.6 6.6 0.00022 36.7 12.9 120 700-855 7-126 (142)
207 1tmy_A CHEY protein, TMY; chem 87.5 7.5 0.00026 35.1 12.9 114 702-853 4-118 (120)
208 3cg0_A Response regulator rece 87.1 7.7 0.00026 36.1 13.0 118 700-856 9-128 (140)
209 2zay_A Response regulator rece 87.0 6.6 0.00023 37.0 12.6 121 700-856 8-128 (147)
210 3crn_A Response regulator rece 86.8 8.2 0.00028 35.8 13.0 117 702-856 5-121 (132)
211 1zgz_A Torcad operon transcrip 86.8 9.6 0.00033 34.5 13.2 115 702-855 4-118 (122)
212 3lua_A Response regulator rece 86.7 2.7 9.1E-05 39.6 9.5 121 701-857 5-128 (140)
213 3cnb_A DNA-binding response re 86.6 8.9 0.0003 35.7 13.2 120 701-856 9-130 (143)
214 3eul_A Possible nitrate/nitrit 86.5 9.4 0.00032 36.3 13.5 120 699-856 14-135 (152)
215 2r25_B Osmosensing histidine p 86.5 6.1 0.00021 36.9 11.9 122 702-855 4-126 (133)
216 3b2n_A Uncharacterized protein 86.4 8.7 0.0003 35.7 12.9 117 702-856 5-123 (133)
217 3snk_A Response regulator CHEY 86.2 2.2 7.5E-05 40.0 8.6 117 701-855 15-132 (135)
218 1xhf_A DYE resistance, aerobic 86.2 10 0.00035 34.3 13.1 115 702-855 5-119 (123)
219 2lpm_A Two-component response 86.2 0.75 2.6E-05 43.9 5.1 109 701-852 9-118 (123)
220 2gkg_A Response regulator homo 86.2 8.2 0.00028 34.9 12.4 117 702-855 7-124 (127)
221 3nhm_A Response regulator; pro 86.0 7.1 0.00024 36.0 12.0 119 701-857 5-123 (133)
222 1zxm_A TOPO IIA ATPase, DNA to 85.9 1.2 4.2E-05 51.2 7.6 48 612-659 87-146 (400)
223 4e7p_A Response regulator; DNA 85.8 7.2 0.00025 37.1 12.3 118 701-856 21-140 (150)
224 3rqi_A Response regulator prot 85.8 2.8 9.5E-05 42.0 9.6 117 700-854 7-123 (184)
225 3cfy_A Putative LUXO repressor 85.7 8.9 0.0003 35.9 12.7 117 702-856 6-122 (137)
226 1k68_A Phytochrome response re 85.7 8 0.00027 35.7 12.3 126 701-855 3-130 (140)
227 1ccw_A Protein (glutamate muta 85.7 7 0.00024 37.7 11.9 110 956-1093 14-134 (137)
228 1mvo_A PHOP response regulator 85.6 13 0.00043 34.4 13.6 116 702-855 5-120 (136)
229 3c3m_A Response regulator rece 85.6 10 0.00035 35.4 13.1 119 702-856 5-123 (138)
230 2pl1_A Transcriptional regulat 85.5 11 0.00037 33.9 12.9 115 703-855 3-117 (121)
231 3heb_A Response regulator rece 85.5 9.9 0.00034 36.1 13.1 128 701-855 5-134 (152)
232 3kto_A Response regulator rece 85.4 2.6 9E-05 39.5 8.7 119 701-857 7-127 (136)
233 3n0r_A Response regulator; sig 85.2 3.2 0.00011 45.3 10.3 115 701-856 161-277 (286)
234 2rjn_A Response regulator rece 85.2 7.7 0.00026 37.0 12.2 120 699-856 6-126 (154)
235 2qzj_A Two-component response 85.2 9.2 0.00031 35.8 12.5 116 702-856 6-121 (136)
236 2qr3_A Two-component system re 85.1 8.7 0.0003 35.7 12.3 118 701-856 4-126 (140)
237 3kcn_A Adenylate cyclase homol 84.9 8.5 0.00029 36.6 12.3 118 701-856 5-123 (151)
238 3kht_A Response regulator; PSI 84.9 6.6 0.00022 37.0 11.4 121 700-856 5-128 (144)
239 4dad_A Putative pilus assembly 84.7 5.2 0.00018 37.8 10.5 121 699-856 19-141 (146)
240 2a9o_A Response regulator; ess 84.4 12 0.00042 33.5 12.6 114 703-855 4-117 (120)
241 2j48_A Two-component sensor ki 84.4 5.4 0.00018 35.5 10.0 113 702-853 3-115 (119)
242 3a10_A Response regulator; pho 84.3 9.9 0.00034 34.0 11.8 112 702-853 3-114 (116)
243 3dzd_A Transcriptional regulat 84.1 5.9 0.0002 44.9 12.3 117 702-856 2-118 (368)
244 1jbe_A Chemotaxis protein CHEY 83.5 11 0.00038 34.4 12.0 118 702-855 6-124 (128)
245 2htm_A Thiazole biosynthesis p 82.8 5.5 0.00019 42.8 10.4 97 965-1091 116-225 (268)
246 1pvg_A DNA topoisomerase II; G 82.5 1.8 6.2E-05 50.0 7.1 50 612-661 99-160 (418)
247 1k66_A Phytochrome response re 82.4 15 0.00051 34.3 12.8 129 701-855 7-137 (149)
248 3ttz_A DNA gyrase subunit B; p 82.2 2 6.8E-05 44.5 6.6 14 612-625 64-77 (198)
249 3q58_A N-acetylmannosamine-6-p 82.1 7.4 0.00025 41.1 11.2 84 963-1077 119-209 (229)
250 3cz5_A Two-component response 82.1 13 0.00046 35.2 12.4 118 701-856 6-125 (153)
251 1yio_A Response regulatory pro 82.0 8.6 0.0003 38.8 11.6 118 701-856 5-122 (208)
252 2qxy_A Response regulator; reg 81.9 11 0.00036 35.3 11.4 117 701-856 5-121 (142)
253 1p6q_A CHEY2; chemotaxis, sign 81.8 11 0.00038 34.4 11.3 118 702-855 8-126 (129)
254 1zh2_A KDP operon transcriptio 81.7 17 0.00057 32.6 12.4 114 703-855 4-117 (121)
255 1dz3_A Stage 0 sporulation pro 81.6 18 0.00062 33.1 12.8 117 702-855 4-122 (130)
256 3ied_A Heat shock protein; HSP 81.5 0.74 2.5E-05 49.4 3.1 56 612-671 131-197 (272)
257 1ys7_A Transcriptional regulat 81.2 12 0.00041 38.4 12.5 118 701-856 8-125 (233)
258 2gwr_A DNA-binding response re 81.0 13 0.00045 38.5 12.8 116 702-856 7-122 (238)
259 2jk1_A HUPR, hydrogenase trans 81.0 22 0.00075 33.0 13.3 75 778-855 44-118 (139)
260 3c97_A Signal transduction his 80.8 10 0.00034 35.5 10.8 117 702-856 12-130 (140)
261 1qkk_A DCTD, C4-dicarboxylate 80.6 7.4 0.00025 37.2 9.9 118 701-856 4-121 (155)
262 3lnu_A Topoisomerase IV subuni 79.8 2.5 8.5E-05 48.6 6.9 49 613-661 84-144 (408)
263 1kgs_A DRRD, DNA binding respo 79.8 13 0.00046 37.8 12.2 117 702-856 4-120 (225)
264 3q9s_A DNA-binding response re 79.6 11 0.00037 39.8 11.7 117 701-856 38-154 (249)
265 3n53_A Response regulator rece 78.2 13 0.00043 34.7 10.6 119 702-857 5-123 (140)
266 1s8n_A Putative antiterminator 78.1 14 0.00049 37.2 11.7 117 701-856 14-131 (205)
267 3igs_A N-acetylmannosamine-6-p 77.1 13 0.00044 39.3 11.1 84 963-1077 119-209 (232)
268 1a04_A Nitrate/nitrite respons 76.9 23 0.0008 35.8 13.0 118 701-856 6-125 (215)
269 2qvg_A Two component response 75.8 31 0.001 32.0 12.6 123 702-854 9-133 (143)
270 2b4a_A BH3024; flavodoxin-like 75.3 15 0.00051 34.1 10.1 117 698-855 13-130 (138)
271 2rdm_A Response regulator rece 74.7 49 0.0017 29.9 13.9 118 700-856 5-123 (132)
272 1ny5_A Transcriptional regulat 74.5 20 0.00069 40.7 12.7 115 703-855 3-117 (387)
273 1i3c_A Response regulator RCP1 73.8 29 0.001 32.7 12.0 126 701-855 9-136 (149)
274 2qsj_A DNA-binding response re 73.3 16 0.00056 34.5 10.0 118 702-856 5-124 (154)
275 3t8y_A CHEB, chemotaxis respon 72.4 42 0.0014 32.3 13.0 105 701-843 26-133 (164)
276 2qv0_A Protein MRKE; structura 72.1 47 0.0016 30.7 12.9 116 701-856 10-127 (143)
277 3cu5_A Two component transcrip 72.1 25 0.00085 32.9 10.9 74 778-855 49-122 (141)
278 2pln_A HP1043, response regula 71.7 56 0.0019 29.9 13.2 115 698-855 16-132 (137)
279 2jba_A Phosphate regulon trans 71.2 17 0.00059 32.9 9.3 118 702-855 4-121 (127)
280 3kyj_B CHEY6 protein, putative 71.1 20 0.00069 33.5 10.0 110 700-846 13-125 (145)
281 3eq2_A Probable two-component 69.8 18 0.0006 41.0 10.8 116 701-854 6-122 (394)
282 2oqr_A Sensory transduction pr 69.1 18 0.0006 37.1 9.8 116 702-856 6-121 (230)
283 1qo0_D AMIR; binding protein, 68.6 23 0.00079 35.3 10.3 113 700-855 12-124 (196)
284 3eqz_A Response regulator; str 67.0 35 0.0012 31.0 10.6 117 701-856 4-125 (135)
285 1p2f_A Response regulator; DRR 65.8 40 0.0014 34.1 11.7 114 702-856 4-117 (220)
286 3ffs_A Inosine-5-monophosphate 65.6 56 0.0019 37.3 13.6 102 949-1077 156-274 (400)
287 3qja_A IGPS, indole-3-glycerol 64.1 59 0.002 35.1 12.9 84 965-1077 154-241 (272)
288 3klo_A Transcriptional regulat 63.7 22 0.00075 36.5 9.2 119 701-856 8-129 (225)
289 1y80_A Predicted cobalamin bin 63.5 38 0.0013 34.7 11.0 100 949-1077 88-196 (210)
290 3f4w_A Putative hexulose 6 pho 62.8 89 0.003 31.7 13.6 112 951-1094 79-208 (211)
291 2i2x_B MTAC, methyltransferase 61.5 73 0.0025 33.9 13.0 113 949-1095 123-244 (258)
292 1req_A Methylmalonyl-COA mutas 61.4 60 0.0021 39.9 13.5 118 949-1094 596-722 (727)
293 4fo4_A Inosine 5'-monophosphat 61.4 1E+02 0.0035 34.7 14.7 101 949-1077 120-239 (366)
294 3sy8_A ROCR; TIM barrel phosph 60.1 48 0.0016 37.5 12.0 119 701-856 4-128 (400)
295 3o63_A Probable thiamine-phosp 59.4 53 0.0018 34.8 11.3 89 977-1094 140-240 (243)
296 3by8_A Sensor protein DCUS; hi 58.3 12 0.00042 35.9 5.6 37 213-252 102-138 (142)
297 3kp1_A D-ornithine aminomutase 58.1 45 0.0015 40.1 11.0 117 949-1095 602-735 (763)
298 3ezx_A MMCP 1, monomethylamine 57.1 35 0.0012 35.5 9.2 100 949-1077 92-202 (215)
299 3c3w_A Two component transcrip 56.1 19 0.00064 37.1 7.0 117 702-856 3-121 (225)
300 1geq_A Tryptophan synthase alp 55.9 22 0.00075 37.5 7.6 62 1017-1084 32-121 (248)
301 1xi3_A Thiamine phosphate pyro 54.6 57 0.0019 33.1 10.4 55 1016-1077 128-189 (215)
302 1xrs_B D-lysine 5,6-aminomutas 53.4 93 0.0032 33.3 11.9 115 950-1093 121-256 (262)
303 2xij_A Methylmalonyl-COA mutas 52.4 85 0.0029 38.8 12.7 117 949-1093 604-729 (762)
304 2ekc_A AQ_1548, tryptophan syn 52.0 39 0.0013 36.2 8.9 73 1016-1093 44-144 (262)
305 3bre_A Probable two-component 49.0 73 0.0025 34.9 10.9 116 702-853 20-136 (358)
306 1yad_A Regulatory protein TENI 47.8 60 0.002 33.4 9.3 55 1016-1077 130-191 (221)
307 3tsm_A IGPS, indole-3-glycerol 47.5 1.1E+02 0.0037 33.0 11.4 93 965-1086 161-262 (272)
308 1geq_A Tryptophan synthase alp 47.3 85 0.0029 32.8 10.6 96 951-1078 110-220 (248)
309 3khj_A Inosine-5-monophosphate 46.2 1.1E+02 0.0037 34.4 11.6 101 950-1077 118-235 (361)
310 3usb_A Inosine-5'-monophosphat 45.8 2.1E+02 0.0072 33.6 14.6 103 949-1078 268-388 (511)
311 1xm3_A Thiazole biosynthesis p 45.3 57 0.002 34.9 8.9 42 1031-1078 166-207 (264)
312 1ka9_F Imidazole glycerol phos 45.2 64 0.0022 33.8 9.2 68 1017-1090 166-243 (252)
313 4gfh_A DNA topoisomerase 2; to 45.2 36 0.0012 44.4 8.3 49 613-661 95-155 (1177)
314 4avf_A Inosine-5'-monophosphat 45.1 1.7E+02 0.0058 34.2 13.6 101 949-1077 241-360 (490)
315 3l4e_A Uncharacterized peptida 44.3 85 0.0029 32.2 9.6 81 948-1057 26-121 (206)
316 1dc7_A NTRC, nitrogen regulati 43.9 19 0.00067 32.2 4.3 73 779-855 48-120 (124)
317 3rht_A (gatase1)-like protein; 43.6 12 0.00039 40.4 2.9 78 950-1057 5-87 (259)
318 2kx7_A Sensor-like histidine k 42.6 25 0.00085 32.7 4.4 96 945-1095 3-99 (117)
319 4adt_A Pyridoxine biosynthetic 42.5 1.6E+02 0.0055 32.1 11.9 58 1032-1095 196-260 (297)
320 2hqr_A Putative transcriptiona 41.9 1.5E+02 0.0052 29.7 11.3 112 703-856 3-115 (223)
321 1p0z_A Sensor kinase CITA; tra 41.7 11 0.00036 35.8 2.0 31 214-247 98-128 (131)
322 2w6r_A Imidazole glycerol phos 41.5 94 0.0032 32.8 9.9 51 1032-1088 189-245 (266)
323 1x1o_A Nicotinate-nucleotide p 40.6 1E+02 0.0034 33.5 9.8 93 951-1077 168-267 (286)
324 2gjl_A Hypothetical protein PA 40.4 1.9E+02 0.0064 31.7 12.4 81 967-1077 112-200 (328)
325 3r2g_A Inosine 5'-monophosphat 40.4 3.4E+02 0.012 30.3 14.5 97 949-1077 112-227 (361)
326 1jcn_A Inosine monophosphate d 40.1 1.9E+02 0.0065 33.9 13.1 88 960-1077 282-386 (514)
327 2v82_A 2-dehydro-3-deoxy-6-pho 39.4 45 0.0015 34.1 6.6 80 967-1078 95-176 (212)
328 3nav_A Tryptophan synthase alp 39.3 30 0.001 37.4 5.4 55 1030-1089 83-143 (271)
329 1y0e_A Putative N-acetylmannos 36.4 1.4E+02 0.0048 30.5 10.0 42 1031-1078 163-204 (223)
330 2yw3_A 4-hydroxy-2-oxoglutarat 36.3 2E+02 0.007 29.3 11.1 97 972-1101 103-206 (207)
331 4fxs_A Inosine-5'-monophosphat 35.9 3.5E+02 0.012 31.5 14.4 102 949-1078 243-363 (496)
332 1a2o_A CHEB methylesterase; ba 35.0 1.7E+02 0.0058 32.4 11.0 116 701-855 4-132 (349)
333 1h5y_A HISF; histidine biosynt 34.8 1.2E+02 0.004 31.3 9.2 69 1016-1090 167-245 (253)
334 3bo9_A Putative nitroalkan dio 34.5 1.8E+02 0.0062 31.9 11.0 81 967-1077 118-204 (326)
335 1eep_A Inosine 5'-monophosphat 34.2 2.5E+02 0.0084 31.8 12.4 91 960-1077 180-284 (404)
336 1thf_D HISF protein; thermophI 34.0 71 0.0024 33.4 7.3 69 1016-1090 164-242 (253)
337 4dzz_A Plasmid partitioning pr 33.4 92 0.0031 30.9 7.8 54 948-1025 29-84 (206)
338 2tps_A Protein (thiamin phosph 33.2 1.4E+02 0.0047 30.5 9.3 56 1016-1077 136-199 (227)
339 1vzw_A Phosphoribosyl isomeras 32.9 60 0.0021 33.9 6.5 68 1016-1089 159-239 (244)
340 2c6q_A GMP reductase 2; TIM ba 32.8 4.4E+02 0.015 29.1 13.9 103 950-1080 133-255 (351)
341 1x1o_A Nicotinate-nucleotide p 31.3 67 0.0023 34.9 6.5 65 1032-1102 183-247 (286)
342 3vnd_A TSA, tryptophan synthas 31.1 36 0.0012 36.6 4.4 56 1031-1091 82-143 (267)
343 2oo3_A Protein involved in cat 30.6 35 0.0012 37.0 4.1 55 949-1024 113-167 (283)
344 2xxa_A Signal recognition part 30.5 84 0.0029 36.2 7.6 33 949-981 129-164 (433)
345 1qop_A Tryptophan synthase alp 30.2 43 0.0015 35.9 4.8 57 1031-1092 81-143 (268)
346 3l0g_A Nicotinate-nucleotide p 30.1 75 0.0025 34.7 6.6 63 1033-1102 196-258 (300)
347 2p10_A MLL9387 protein; putati 30.1 1.1E+02 0.0037 33.1 7.7 84 968-1078 158-259 (286)
348 1gox_A (S)-2-hydroxy-acid oxid 29.7 2.3E+02 0.0077 31.8 10.9 58 1016-1077 246-308 (370)
349 3ajx_A 3-hexulose-6-phosphate 29.4 41 0.0014 34.2 4.3 67 1022-1093 29-99 (207)
350 3tqv_A Nicotinate-nucleotide p 28.9 65 0.0022 35.0 5.9 79 1017-1102 169-249 (287)
351 2lci_A Protein OR36; structura 28.8 1.3E+02 0.0046 26.5 6.7 41 952-992 80-120 (134)
352 1j8m_F SRP54, signal recogniti 28.3 87 0.003 34.0 6.9 32 948-979 125-159 (297)
353 2f95_B Sensory rhodopsin II tr 28.0 38 0.0013 32.4 3.6 25 380-404 67-91 (163)
354 2z6i_A Trans-2-enoyl-ACP reduc 28.0 3E+02 0.01 30.1 11.4 56 1016-1077 130-190 (332)
355 1yxy_A Putative N-acetylmannos 27.9 2.1E+02 0.0072 29.4 9.7 40 1031-1077 175-214 (234)
356 4e38_A Keto-hydroxyglutarate-a 27.7 3.6E+02 0.012 28.1 11.3 107 953-1091 18-125 (232)
357 1rd5_A Tryptophan synthase alp 27.4 1.3E+02 0.0044 31.8 8.0 86 981-1092 30-139 (262)
358 3o07_A Pyridoxine biosynthesis 26.8 52 0.0018 35.6 4.5 58 1032-1095 187-251 (291)
359 3kts_A Glycerol uptake operon 26.7 96 0.0033 31.6 6.3 52 1016-1077 127-178 (192)
360 1ka9_F Imidazole glycerol phos 26.6 1.1E+02 0.0039 31.7 7.4 53 1019-1077 48-103 (252)
361 3bw2_A 2-nitropropane dioxygen 26.0 3.8E+02 0.013 29.7 12.0 78 970-1077 142-236 (369)
362 4a29_A Engineered retro-aldol 26.0 6.2E+02 0.021 26.9 12.7 85 965-1078 145-233 (258)
363 1p0k_A Isopentenyl-diphosphate 25.9 5.1E+02 0.018 28.4 12.9 45 1028-1077 235-279 (349)
364 1o4u_A Type II quinolic acid p 25.8 92 0.0031 33.8 6.4 57 1032-1094 180-236 (285)
365 2agk_A 1-(5-phosphoribosyl)-5- 25.7 52 0.0018 35.2 4.4 72 1017-1090 172-257 (260)
366 2w6r_A Imidazole glycerol phos 25.5 94 0.0032 32.8 6.5 55 1017-1077 44-102 (266)
367 3paj_A Nicotinate-nucleotide p 25.5 83 0.0028 34.7 6.0 64 1032-1102 219-282 (320)
368 2fli_A Ribulose-phosphate 3-ep 25.3 1.3E+02 0.0045 30.5 7.4 75 1016-1092 131-217 (220)
369 2p9j_A Hypothetical protein AQ 25.1 2E+02 0.0068 27.2 8.3 68 1016-1090 8-93 (162)
370 3qz6_A HPCH/HPAI aldolase; str 24.0 5.6E+02 0.019 27.0 12.2 73 1016-1092 37-110 (261)
371 4fxs_A Inosine-5'-monophosphat 23.7 1.6E+02 0.0054 34.6 8.4 56 1016-1077 243-299 (496)
372 1tqj_A Ribulose-phosphate 3-ep 23.1 1.1E+02 0.0037 31.9 6.2 70 1016-1092 30-108 (230)
373 3s83_A Ggdef family protein; s 23.1 1.5E+02 0.0051 31.0 7.5 100 965-1091 144-254 (259)
374 3ovp_A Ribulose-phosphate 3-ep 21.9 96 0.0033 32.4 5.5 56 1016-1077 134-196 (228)
375 2y88_A Phosphoribosyl isomeras 21.8 1.2E+02 0.0041 31.4 6.4 66 1016-1087 162-240 (244)
376 2px0_A Flagellar biosynthesis 21.8 1.4E+02 0.0049 32.2 7.1 94 948-1066 133-231 (296)
377 3fwz_A Inner membrane protein 21.7 3.1E+02 0.01 25.5 8.7 54 1016-1077 71-124 (140)
378 1tqx_A D-ribulose-5-phosphate 21.6 1.9E+02 0.0065 30.1 7.7 101 968-1093 109-221 (227)
379 3vk5_A MOEO5; TIM barrel, tran 21.3 1.6E+02 0.0055 31.8 7.1 60 1016-1080 199-258 (286)
380 3bul_A Methionine synthase; tr 21.0 4.3E+02 0.015 31.5 11.4 101 949-1077 98-210 (579)
381 1uir_A Polyamine aminopropyltr 20.4 2.6E+02 0.0088 30.3 8.9 71 949-1043 101-186 (314)
382 4e5v_A Putative THUA-like prot 20.3 72 0.0025 34.5 4.2 83 949-1057 4-94 (281)
383 3sgz_A Hydroxyacid oxidase 2; 20.0 4.9E+02 0.017 29.0 11.0 58 1016-1077 238-300 (352)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=2e-38 Score=348.29 Aligned_cols=233 Identities=28% Similarity=0.398 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 001298 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDD--QLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKME 491 (1105)
Q Consensus 414 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~--~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~ 491 (1105)
++.++.++.|.+|++++||||||||++|.|++++|.... ...++..+++..|.+++.+|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345556677889999999999999999999999986431 123445678889999999999999999999999999999
Q ss_pred ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC----cEEEEeecc
Q 001298 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG----HIIIRGWCE 567 (1105)
Q Consensus 492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G----~i~v~~~~~ 567 (1105)
+..+++++.+++++++..+...+..+++.+.++.....+..+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998887644555788999999999999999999999754 355443211
Q ss_pred ccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCC
Q 001298 568 NLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGG 647 (1105)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~G 647 (1105)
...+.|+|.|+|+|||++.+++||+|||+.+.+.+...+|
T Consensus 171 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G 210 (258)
T 2c2a_A 171 ----------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPG 210 (258)
T ss_dssp ----------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------
T ss_pred ----------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCC
Confidence 1247799999999999999999999999988765656679
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 648 TGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 648 tGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
+||||+|||++|+.|||+|+++|.+|+||+|+|.||...
T Consensus 211 ~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 211 TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred cchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 999999999999999999999999999999999999754
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=3.4e-33 Score=307.64 Aligned_cols=227 Identities=24% Similarity=0.427 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 001298 414 RKAEASNNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELE 493 (1105)
Q Consensus 414 ~~ae~~~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~ 493 (1105)
++.++..+.+.+|++.++|||||||++|.+++++|......+++.++.+..|..++.+|..++++++++++++.+...+.
T Consensus 31 ~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 110 (268)
T 4ew8_A 31 AALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALE 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccee
Confidence 34455666788999999999999999999999999876667788889999999999999999999999999999999999
Q ss_pred ceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCC
Q 001298 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTS 572 (1105)
Q Consensus 494 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~ 572 (1105)
..++++.+++++++..+...+..+++.+.+++++..+ .+.+|+..|.|||.|||.||+||++. |.|.|.+...
T Consensus 111 ~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~----- 184 (268)
T 4ew8_A 111 IEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA----- 184 (268)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-----
T ss_pred eeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-----
Confidence 9999999999999999999999999999999877654 58999999999999999999999986 6677654321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
...+.|+|.|+|+||+++.++++|++|++. +.+|+||||
T Consensus 185 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------~~~g~GlGL 223 (268)
T 4ew8_A 185 -----------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFVGR------DRGGPGLGL 223 (268)
T ss_dssp -----------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTCCC------SSCCCTTHH
T ss_pred -----------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHhcC------CCCCCcccH
Confidence 124789999999999999999999999843 246999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
+|||++++.|||+|+++|.+++||+|+|.||+..+
T Consensus 224 ~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 224 ALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred HHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999998653
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-34 Score=308.95 Aligned_cols=216 Identities=21% Similarity=0.315 Sum_probs=134.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHH
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKE 502 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~l 502 (1105)
+.+|++.+||||||||++|.++++++......+++..+++..|.+++.++..++++++++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45899999999999999999999998655444444456677788999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc-EEEEeeccccCCCCCCccCCcc
Q 001298 503 LEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-IIIRGWCENLDTSKNTAEFPTD 581 (1105)
Q Consensus 503 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-i~v~~~~~~~~~~~~~~~~~~~ 581 (1105)
+++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||+||+||++.|. |.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~--------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA--------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS---------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcc---------------
Confidence 999999999999999999999987663 46889999999999999999999997664 5544210
Q ss_pred ccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHH
Q 001298 582 RKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~ 661 (1105)
. .|+|.|+|+||+++.++++|++|++.+. ...+|+||||+|||++++.
T Consensus 146 -------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~ 193 (222)
T 3jz3_A 146 -------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKL 193 (222)
T ss_dssp -------------------------S----EEEEECSCC-----------------------------CTHHHHHHHHHH
T ss_pred -------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHHHHHHHHH
Confidence 1 1789999999999999999999997542 2346999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEecCC
Q 001298 662 MGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 662 ~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|||+|+++|.+++||+|+|++|...
T Consensus 194 ~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 194 HGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp TTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cCCEEEEEcCCCCcEEEEEeecCCC
Confidence 9999999999999999999999754
No 4
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=9.3e-33 Score=322.99 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=184.7
Q ss_pred HHHHHHhhhhhhh-----HHHHHHHHHHHHhcC---CCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhccCCccc
Q 001298 424 SQFLANMSHELRT-----PMAAIIGLLEILKSD---DQLTNEQYSTVC--QIKKSSYALLRLLNRILD-LSKVESGKMEL 492 (1105)
Q Consensus 424 s~Fla~~SHELRT-----PL~~I~G~~elL~~~---~~l~~e~~~~l~--~I~~ss~~L~~LIndiLd-lskie~g~~~l 492 (1105)
.+|+++++||||| ||+.|.|+++++... ....++..++++ .|.+.+.+| +|+++|+ +++. .+...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3578899999999 899999999976532 123345566777 588999999 9999999 7777 777777
Q ss_pred cc----eeecHHHHHHHHHHHHHHHHhcC-----CcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc--
Q 001298 493 EN----TEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 559 (1105)
Q Consensus 493 ~~----~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-- 559 (1105)
.. +++++.++++++++.+...+.++ ++.+.+++ .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77 89999999999999999999988 99988854 2223457899999999999999999999997664
Q ss_pred ------EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001298 560 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633 (1105)
Q Consensus 560 ------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~ 633 (1105)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 253 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~if~~ 292 (394)
T 2e0a_A 253 QPSLTPIEVIVVL----------------------------------------GKEDLTIKISDRGGGVPLRIIDRLFSY 292 (394)
T ss_dssp SSSCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCGGGHHHHTST
T ss_pred cCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCc
Confidence 7776421 122478999999999999999999999
Q ss_pred cccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 634 FEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 634 F~q~~~s------~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||+.+.. .++..+|+||||+|||++|+.|||+|+++|.+|.||+|+|.||...
T Consensus 293 f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 293 TYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp TCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 9998765 4555689999999999999999999999999999999999999864
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.1e-32 Score=322.46 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=173.0
Q ss_pred HHHHHhhhhhhh-----HHHHHHHHHHHHhcCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhcc-CCccc
Q 001298 425 QFLANMSHELRT-----PMAAIIGLLEILKSDDQLTNE----QYSTVC--QIKKSSYALLRLLNRILDLSKVES-GKMEL 492 (1105)
Q Consensus 425 ~Fla~~SHELRT-----PL~~I~G~~elL~~~~~l~~e----~~~~l~--~I~~ss~~L~~LIndiLdlskie~-g~~~l 492 (1105)
+|+++++||||| ||+.|.|+++++.... .++. ..++++ .|.+.+.+| +|+++|++++.+. +...+
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~-~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~ 173 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYG-DDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPK 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCc
Confidence 589999999999 9999999999986432 2222 233566 378889999 9999999999988 67777
Q ss_pred cc----eeecHHHHHHHHHHHHHHHHhc-----CCcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc--
Q 001298 493 EN----TEFDLQKELEELVDMFSVQCSN-----HNVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 559 (1105)
Q Consensus 493 ~~----~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-- 559 (1105)
.. +++++.+++++++..+...+.+ +++.+.+.. .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 174 ~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 174 HIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 77 8999999999999999999987 999988743 1223457899999999999999999999998765
Q ss_pred ------EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001298 560 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633 (1105)
Q Consensus 560 ------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~ 633 (1105)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 254 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~~ 293 (394)
T 2btz_A 254 SLILPPIKVMVAL----------------------------------------GEEDLSIKMSDRGGGVPLRKIERLFSY 293 (394)
T ss_dssp CSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHHHHTCT
T ss_pred CCCCCCEEEEEEe----------------------------------------CCCEEEEEEEeCCCCCCHHHHHHHhcc
Confidence 7776421 122478999999999999999999999
Q ss_pred cccCCCC-----CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 634 FEQGDPS-----TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 634 F~q~~~s-----~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||+.+.. ..+..+|+||||+|||.+|+.|||+|+++|.+|.||+|+|.||...
T Consensus 294 f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 294 MYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp TTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred cccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9998765 4455679999999999999999999999999999999999999864
No 6
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1.9e-32 Score=319.67 Aligned_cols=226 Identities=18% Similarity=0.196 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccee
Q 001298 418 ASNNYKSQFLANMSHELRTPMAAII-GLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTE 496 (1105)
Q Consensus 418 ~~~~~Ks~Fla~~SHELRTPL~~I~-G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~ 496 (1105)
+.++.+.+|+++++||+||||++|. |+.+++. ....+++..+++..|..++.+|..|++++|++++++.+.+.+..++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~ 194 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK-HIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTR 194 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSS-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCC
Confidence 4456788999999999999999999 7766553 3334567788999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHhcC---CcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC---------cEEEEe
Q 001298 497 FDLQKELEELVDMFSVQCSNH---NVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG---------HIIIRG 564 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k---~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G---------~i~v~~ 564 (1105)
+++.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+.+| .|.|.+
T Consensus 195 ~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~ 272 (388)
T 1gkz_A 195 LSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITI 272 (388)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEE
Confidence 999999999999999999988 3333333333 23578999999999999999999999765 577654
Q ss_pred eccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCC---
Q 001298 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPST--- 641 (1105)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~--- 641 (1105)
.. +...+.|+|.|+|+|||++.+++||++||+.+...
T Consensus 273 ~~----------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 273 AN----------------------------------------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp EE----------------------------------------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred Ee----------------------------------------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 21 12247899999999999999999999999987632
Q ss_pred -----------------CCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 642 -----------------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 642 -----------------~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
++..+|+||||+|||.+|+.|||+|+++|.+|.||+|+|.||...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 374 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHID 374 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSS
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCC
Confidence 233479999999999999999999999999999999999999854
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=2.9e-32 Score=320.10 Aligned_cols=219 Identities=18% Similarity=0.200 Sum_probs=178.3
Q ss_pred HHHHhhhhhhh-----HHHHHHHHHHHHhcCCC---CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc----C---
Q 001298 426 FLANMSHELRT-----PMAAIIGLLEILKSDDQ---LTNEQYSTVCQ--IKKSSYALLRLLNRILDLSKVES----G--- 488 (1105)
Q Consensus 426 Fla~~SHELRT-----PL~~I~G~~elL~~~~~---l~~e~~~~l~~--I~~ss~~L~~LIndiLdlskie~----g--- 488 (1105)
++++++||||| ||+.|.|+++++..... ..++..++++. +.+.+.+| ||+++|++++.|. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 45555599999 99999999997764321 11233556666 77788888 9999999999976 3
Q ss_pred CccccceeecHHHHHHHHHHHHHHHHhcC-----CcEEEEEe--CCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCc--
Q 001298 489 KMELENTEFDLQKELEELVDMFSVQCSNH-----NVETVLDL--SDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGH-- 559 (1105)
Q Consensus 489 ~~~l~~~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-- 559 (1105)
.+.+..+++++.+++++++..+...+.++ ++.+.+++ .+..+..+.+|+.+|.|||.|||+||+||+++|+
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66788889999999999999999999988 99998876 1223457899999999999999999999997654
Q ss_pred ------EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcc
Q 001298 560 ------IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFES 633 (1105)
Q Consensus 560 ------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~ 633 (1105)
|.|.+.. +...+.|+|.|+|+|||++.+++||++
T Consensus 266 ~~~~~~I~I~~~~----------------------------------------~~~~v~i~V~D~G~GI~~e~~~~if~~ 305 (407)
T 2q8g_A 266 RGVYPPIQVHVTL----------------------------------------GNEDLTVKMSDRGGGVPLRKIDRLFNY 305 (407)
T ss_dssp TCCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGCT
T ss_pred CCCCCCEEEEEEe----------------------------------------CCCEEEEEEEecCCCCCHHHHHHHhCc
Confidence 7766431 122478999999999999999999999
Q ss_pred cccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 634 FEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 634 F~q~~~s------~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||+.+.. ..+..+|+||||+|||++++.|||+|+++|.+|.||+|+|.||...
T Consensus 306 f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 306 MYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp TTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred cccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9998765 2445579999999999999999999999999999999999999854
No 8
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.98 E-value=2.1e-31 Score=288.43 Aligned_cols=216 Identities=20% Similarity=0.343 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+.+.+|++.++|||||||++|.+++++|......+++..+++..|.+++.++..++++++++++.+.+ ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 344678999999999999999999999997665445566778889999999999999999999998765 4568999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC-CCcEEEEeeccccCCCCCCccC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEF 578 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~i~v~~~~~~~~~~~~~~~~ 578 (1105)
..++++++..+...+..+++.+.++.++ ..+.+|+.+|.|||.|||.||+||++ .|.|.|.+...
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~----------- 152 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID----------- 152 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe-----------
Confidence 9999999999999999999999888754 36889999999999999999999995 45666654321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001298 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
...+.|+|.|+|+||+++.++++|+||++.+ ..+|+||||+|||++
T Consensus 153 -----------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~g~GlGL~i~~~i 198 (244)
T 3d36_A 153 -----------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRI 198 (244)
T ss_dssp -----------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHH
T ss_pred -----------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCCCcchhHHHHHHH
Confidence 1247899999999999999999999999643 246899999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 659 VNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 659 Ve~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
++.|||+|++++.+++||+|+|.||+...
T Consensus 199 ~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 199 IESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred HHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 99999999999999999999999998653
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.98 E-value=1.1e-31 Score=316.19 Aligned_cols=220 Identities=18% Similarity=0.224 Sum_probs=168.6
Q ss_pred HHHHHHhhhhhhhHHH-----HHHHHHHHHhcCCC---CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-ccCCccc
Q 001298 424 SQFLANMSHELRTPMA-----AIIGLLEILKSDDQ---LTNEQYSTVCQIKKS--SYALLRLLNRILDLSKV-ESGKMEL 492 (1105)
Q Consensus 424 s~Fla~~SHELRTPL~-----~I~G~~elL~~~~~---l~~e~~~~l~~I~~s--s~~L~~LIndiLdlski-e~g~~~l 492 (1105)
.+|. +++|||||||+ .|.|+++++..... ..++..++++.|..+ +.+| +|+++|.+.+. +.+....
T Consensus 119 ~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCC
Confidence 4565 56699999999 88999997754211 123344566665544 7788 99999766654 3344333
Q ss_pred ----cceeecHHHHHHHHHHHHHHHHhc-----CCcEEEEEeC--CCCCceEEeCHHHHHHHHHHHHhhHhcccCCC---
Q 001298 493 ----ENTEFDLQKELEELVDMFSVQCSN-----HNVETVLDLS--DNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG--- 558 (1105)
Q Consensus 493 ----~~~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~~--~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G--- 558 (1105)
..+++++.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|.|||.|||+||+||+++|
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~ 275 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYED 275 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 338999999999999999999887 8888877432 12345789999999999999999999999765
Q ss_pred ------cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhc
Q 001298 559 ------HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFE 632 (1105)
Q Consensus 559 ------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe 632 (1105)
.|.|.+.. +...+.|+|.|+|+|||++.+++||+
T Consensus 276 ~~~~~~~I~I~~~~----------------------------------------~~~~v~I~V~D~G~GI~~e~l~~iF~ 315 (419)
T 1y8o_A 276 RKEGYPAVKTLVTL----------------------------------------GKEDLSIKISDLGGGVPLRKIDRLFN 315 (419)
T ss_dssp CSSCCCCEEEEEEE----------------------------------------CSSEEEEEEEECSCCCCHHHHGGGGC
T ss_pred cCCCCCCEEEEEEe----------------------------------------CCCEEEEEEEECCCCCCHHHHHHHhC
Confidence 47765421 12247899999999999999999999
Q ss_pred ccccCCCC------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 633 SFEQGDPS------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 633 ~F~q~~~s------~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|||+.+.. ..+..+|+||||+|||++|+.|||+|.++|.+|.||+|+|.||...
T Consensus 316 ~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 316 YMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp TTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred cccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 99998765 4455679999999999999999999999999999999999999864
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=3.8e-31 Score=301.92 Aligned_cols=216 Identities=25% Similarity=0.346 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
.+.+.+|++.++|||||||++|.+++++|......+++..+++..|..++.+|..++++++++++.. ..+...++++
T Consensus 129 ~~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l 205 (349)
T 3a0r_A 129 LSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNL 205 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCH
Confidence 3456789999999999999999999999976543444456788899999999999999999999943 3567789999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC-CCcEEEEeeccccCCCCCCccC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLDTSKNTAEF 578 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~i~v~~~~~~~~~~~~~~~~ 578 (1105)
.+++++++..+...+..+++.+.+++++.. ..+.+|+.+|.|||.|||.||+||++ .|.|.|.+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~----------- 273 (349)
T 3a0r_A 206 NELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM----------- 273 (349)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE-----------
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec-----------
Confidence 999999999999999999999988886553 36899999999999999999999995 57777764321
Q ss_pred CccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHH
Q 001298 579 PTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~L 658 (1105)
...+.|+|.|+|+|||++.+++||+|||+.+ .+|+||||+|||++
T Consensus 274 -----------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL~i~~~~ 318 (349)
T 3a0r_A 274 -----------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKI 318 (349)
T ss_dssp -----------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHH
T ss_pred -----------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCC------CCCccchHHHHHHH
Confidence 1247899999999999999999999999643 45999999999999
Q ss_pred HH-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 659 VN-KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 659 Ve-~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
|+ .|||.|.++|.+ +||+|+|.||+..
T Consensus 319 v~~~~gg~i~~~~~~-~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 319 IEDEHGGKIWTENRE-NGVVFIFEIPKTP 346 (349)
T ss_dssp HHHTTCSBCCEEECS-SEEEEEEEEESCT
T ss_pred HHHhCCCEEEEEeCC-CcEEEEEEecCCC
Confidence 99 899999999986 5999999999854
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=9.5e-30 Score=278.56 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=148.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHHH
Q 001298 426 FLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELEE 505 (1105)
Q Consensus 426 Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~~ 505 (1105)
+.++|||||||||++|.|++|+|.+.. .++...+.+..|.+++.++..+ ++++++..+. .....++++.++.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~~l----l~~~r~~~~~-~~~~~~~~~~~l~-- 120 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLADL----LQFTRVAFGA-SASAENFDSRELE-- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHHHH----HHHHHHHTTC-CSSCCCEEHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHH----HHHHHHhhcc-ccccccccHHHHH--
Confidence 678899999999999999999987543 4555667788888888776554 5566665443 3344577776543
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCC-cEEEEeeccccCCCCCCccCCccccc
Q 001298 506 LVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSG-HIIIRGWCENLDTSKNTAEFPTDRKK 584 (1105)
Q Consensus 506 v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~i~v~~~~~~~~~~~~~~~~~~~~~~ 584 (1105)
..+...+..+++++.+++++.. ++..+.|++.||++||+||++.| .|.|.+...
T Consensus 121 --~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~----------------- 175 (247)
T 4fpp_A 121 --KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAA----------------- 175 (247)
T ss_dssp --HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE-----------------
T ss_pred --HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE-----------------
Confidence 3445567788898887765432 35678999999999999999865 566654321
Q ss_pred cchhhhhhhhhhhccccccccCCceEEEEEEEeCCCC--CChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHc
Q 001298 585 FGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCG--IDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKM 662 (1105)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~G--I~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~ 662 (1105)
++ .+.|+|.|+|+| |+++.++++|++|+. ++.+|+||||+|||+||+.|
T Consensus 176 ---------------------~~--~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~------~~~~G~GLGLai~~~iv~~h 226 (247)
T 4fpp_A 176 ---------------------DG--RFSIIADAKGPRARLRPEVLAGLKGEPLA------EGLGGPWVQAAYLNALVRAA 226 (247)
T ss_dssp ---------------------TT--EEEEEEEEESTTCCCCHHHHHHHTTCCCC------SSCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------CC--EEEEEEEEcCCCCCCCHHHHHHhcCCCCC------CCCCCccHHHHHHHHHHHHc
Confidence 12 366788888866 778888888888863 23569999999999999999
Q ss_pred CCEEEEEEeCCCceEEEEEEe
Q 001298 663 GGEIKVVKKNSPGTLMQLYLL 683 (1105)
Q Consensus 663 gG~I~v~S~~g~GT~f~~~lp 683 (1105)
||+|+++|.+| ||+|+|+||
T Consensus 227 GG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 227 GGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp TCEEEEEEETT-EEEEEEEEE
T ss_pred CCEEEEEEcCC-EEEEEEEec
Confidence 99999999865 999999998
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=2.6e-26 Score=266.86 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=158.8
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQ 500 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~ 500 (1105)
..|.+|+++++||||||++.|.++++.+.. ..+.+++.+|.++++++++++. ..+.+++.
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~ 67 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM--------KIRMVPIS 67 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHH
Confidence 457899999999999999999988776531 3588889999999999999873 23467778
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHH---HHHHHHHHHHhhHhccc-------------CCCcEEEEe
Q 001298 501 KELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPG---RVFQIFSNLINNSIKFT-------------SSGHIIIRG 564 (1105)
Q Consensus 501 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~---rL~QIL~NLL~NAIKfT-------------~~G~i~v~~ 564 (1105)
.+++.+...++..+..++.++.+.+.... +..|+. ++.|+|.||+.||+||+ +.|.|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 99999999999999887777777765442 356875 55555999999999996 467777765
Q ss_pred eccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhH-----------------
Q 001298 565 WCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW----------------- 627 (1105)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l----------------- 627 (1105)
... ...+.|+|.|+|+||+++.+
T Consensus 145 ~~~----------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 145 RHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp EEE----------------------------------------TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred EEe----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 321 12478999999999999987
Q ss_pred -------hhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 628 -------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 628 -------~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++.||+..
T Consensus 185 ~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp SCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred CCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8899999876543 334579999999999999999999999999999999999999865
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.94 E-value=4.9e-26 Score=225.27 Aligned_cols=122 Identities=24% Similarity=0.493 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+++|||||||++.+|..++.+|+..||. |..|.||.+|++.++. .+||+||+|++|
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~-----------------------~~~DlillD~~M 67 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-----------------------GDFDFVVTDWNM 67 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCC
Confidence 3579999999999999999999999996 7789999999999975 379999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+|||+|++++||+.+. .+++|||++||+...++..+|+++||++||+|||+.++|.++|.+++++
T Consensus 68 P~mdG~el~~~ir~~~~---~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 68 PGMQGIDLLKNIRADEE---LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp SSSCHHHHHHHHHHSTT---TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHhCCC---CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999998643 3679999999999999999999999999999999999999999999875
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=4.5e-23 Score=206.95 Aligned_cols=145 Identities=22% Similarity=0.343 Sum_probs=127.5
Q ss_pred eeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCC
Q 001298 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 495 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~ 574 (1105)
+++++.+++++++..+...+..+++.+.+++++.. .+.+|+..|.|||.|||+||+||++. .|.|.+...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 57999999999999999999999999999987654 48899999999999999999999976 666654211
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
...+.|+|.|+|+||+++.++++|++|++.+.. .+|+||||+|
T Consensus 72 ---------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i 114 (152)
T 1id0_A 72 ---------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAV 114 (152)
T ss_dssp ---------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHH
T ss_pred ---------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHH
Confidence 123779999999999999999999999986543 3699999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 655 vk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||++++.|||+|.+++.++.||+|+|.||+..
T Consensus 115 ~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 115 AREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred HHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 99999999999999999999999999999864
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=3.4e-23 Score=207.70 Aligned_cols=146 Identities=21% Similarity=0.336 Sum_probs=116.4
Q ss_pred cceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCC
Q 001298 493 ENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTS 572 (1105)
Q Consensus 493 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~ 572 (1105)
+.+++||.+++++++..+...+ +++.+.++.+. +..+.+|+.+|.|||.|||+||+||++.|.|.|.+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~----- 74 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPSP--TCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSS----- 74 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSCC--CCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-----
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccCC--CceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec-----
Confidence 4678999999999999887765 45666666543 34689999999999999999999999988777664321
Q ss_pred CCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchH
Q 001298 573 KNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGL 652 (1105)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGL 652 (1105)
...+.|+|.|+|+||+++.++++|+||++.+.. +.+|+||||
T Consensus 75 -----------------------------------~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL 116 (150)
T 1ysr_A 75 -----------------------------------RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGL 116 (150)
T ss_dssp -----------------------------------TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCC
T ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC---CCCCCCcCH
Confidence 123789999999999999999999999986532 356999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 653 SIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 653 aIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+|||++++.|||+|++++.+++||+|++.||+.
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 999999999999999999999999999999974
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=8.8e-23 Score=217.46 Aligned_cols=190 Identities=10% Similarity=0.087 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecH
Q 001298 421 NYKSQFLANMSHELRTPMAAIIGLLEILKSDDQ-LTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDL 499 (1105)
Q Consensus 421 ~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~-l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL 499 (1105)
+.+.++...+.|++++||++|.++++++..... .+++..+.+..+...+.++...+.+++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 345678999999999999999999998864322 234455677778887777777777776432 24677
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCC
Q 001298 500 QKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFP 579 (1105)
Q Consensus 500 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~ 579 (1105)
.+.++.+...+ ..+++.+.++++...+.....++..|.+|+.||+.||+||++.|.|.|.+...
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------------ 158 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL------------ 158 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE------------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe------------
Confidence 77777766544 56788888877655443345688899999999999999999888888765321
Q ss_pred ccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHH
Q 001298 580 TDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LV 659 (1105)
...+.|+|.|+|+|||++.+ +|+||||+|||++|
T Consensus 159 ----------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~~~v 192 (218)
T 3ehh_A 159 ----------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMRERL 192 (218)
T ss_dssp ----------------------------TTEEEEEEEESSCCCC--------------------------CHHHHHHHHH
T ss_pred ----------------------------CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHHHHHH
Confidence 12478999999999999865 48999999999999
Q ss_pred HHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 660 NKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 660 e~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+.|||+|++.|.+ ||+|++.||+.
T Consensus 193 ~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 193 EFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp HHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHcCCEEEEeCCC--CeEEEEEEecC
Confidence 9999999999988 99999999974
No 17
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.89 E-value=3.3e-23 Score=220.04 Aligned_cols=137 Identities=33% Similarity=0.560 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+.+||||||++.++..++.+|+..|+ .|..+.|+.+|++.+......... .......+||+||+|+.|
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~----------~~~~~~~~~dlillD~~l 129 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREE----------QGSVDKLPFDYIFMDCQM 129 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHH----------HTCSSCCSCSEEEEESCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccc----------cccccCCCCCEEEEcCCC
Confidence 356999999999999999999999999 999999999999998642100000 000112479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccC-CHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHA-MNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+|||++++++||+.+... .+++|||++|++. ..+...+|+++|+++||.||++ +|..+|++++++..
T Consensus 130 p~~~G~el~~~lr~~~~~~-~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 130 PEMDGYEATREIRKVEKSY-GVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp SSSCHHHHHHHHHHHHHTT-TCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhhhhhc-CCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 9999999999999863211 2569999999998 7788889999999999999999 99999999986654
No 18
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=1.6e-22 Score=208.98 Aligned_cols=151 Identities=29% Similarity=0.485 Sum_probs=124.8
Q ss_pred eecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCC-CcEEEEeeccccCCCCC
Q 001298 496 EFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSS-GHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 496 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~i~v~~~~~~~~~~~~ 574 (1105)
+|+|.+++++++..+... ..+++.+.+++++. +..+.+|+.+|.+||.|||.||+||++. |.+.|.+...
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~------- 72 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVN------- 72 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEE-------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEc-------
Confidence 689999999999999988 88999999988664 3468999999999999999999999965 5666554211
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
.....+.|+|.|+|+||+++.++++|++|++.+...+.+.+|+||||+|
T Consensus 73 -------------------------------~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 121 (177)
T 3sl2_A 73 -------------------------------EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAI 121 (177)
T ss_dssp -------------------------------TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHH
T ss_pred -------------------------------cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHH
Confidence 1122478999999999999999999999999877666677899999999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 655 VRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 655 vk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||++++.|||+|.+.+.++.||+|++.||+..
T Consensus 122 v~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~ 153 (177)
T 3sl2_A 122 AKEMVQAHGGDIWADSIEGKGTTITFTLPYKE 153 (177)
T ss_dssp HHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEecCCCCeEEEEEEeCCC
Confidence 99999999999999999999999999999864
No 19
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=3.5e-22 Score=200.05 Aligned_cols=147 Identities=27% Similarity=0.398 Sum_probs=125.7
Q ss_pred ccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC-CCcEEEEeeccccC
Q 001298 492 LENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS-SGHIIIRGWCENLD 570 (1105)
Q Consensus 492 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~-~G~i~v~~~~~~~~ 570 (1105)
++.+++++.+++++++..+...+..+++++.+++++. +..+.+|+..|.|||.|||+||+||++ .|.|.|.+..
T Consensus 1 l~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~---- 75 (152)
T 3a0y_A 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED---- 75 (152)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEE----
T ss_pred CccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEe----
Confidence 3567899999999999999999999999999988654 346899999999999999999999995 5667665421
Q ss_pred CCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccc
Q 001298 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650 (1105)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGL 650 (1105)
....+.|+|.|+|+||+++.++++|++|++.+ .+|+||
T Consensus 76 ------------------------------------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~------~~g~Gl 113 (152)
T 3a0y_A 76 ------------------------------------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGL 113 (152)
T ss_dssp ------------------------------------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCC
T ss_pred ------------------------------------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC------CCCCCc
Confidence 11247899999999999999999999999643 358999
Q ss_pred hHHHHHHHHH-HcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 651 GLSIVRTLVN-KMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 651 GLaIvk~LVe-~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
||++||++++ .|||++.+++.+ .||+|++.||+..
T Consensus 114 GL~i~~~~~~~~~gg~~~~~~~~-~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 114 GLSICRKIIEDEHGGKIWTENRE-NGVVFIFEIPKTP 149 (152)
T ss_dssp SHHHHHHHHHTTTSCEEEEEEET-TEEEEEEEEESCC
T ss_pred CHHHHHHHHHHhCCcEEEEecCC-CCEEEEEEeCCCC
Confidence 9999999999 999999999986 5999999999853
No 20
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=2.7e-22 Score=203.72 Aligned_cols=149 Identities=26% Similarity=0.402 Sum_probs=123.7
Q ss_pred cccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccC
Q 001298 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLD 570 (1105)
Q Consensus 491 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~ 570 (1105)
++..++++|.+++++++..+. .++..+.+++.+. +..+.+|+.+|.|||.|||+||+||+ .|.|.|.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~--- 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE--- 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE---
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc---
Confidence 466789999999999998753 3445555555333 34589999999999999999999999 78888765321
Q ss_pred CCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccc
Q 001298 571 TSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGL 650 (1105)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGL 650 (1105)
...+.|+|.|+|+||+++.++++|++||+.+.. +..+|+||
T Consensus 75 -------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~Gl 115 (161)
T 1bxd_A 75 -------------------------------------PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGL 115 (161)
T ss_dssp -------------------------------------TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSC
T ss_pred -------------------------------------CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCccc
Confidence 124779999999999999999999999997653 33479999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 651 GLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 651 GLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
||+|||++++.|||+|.+++.++.||+|++.||+...
T Consensus 116 GL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 116 GLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp CCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 9999999999999999999999999999999998653
No 21
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=2.8e-22 Score=202.34 Aligned_cols=156 Identities=29% Similarity=0.449 Sum_probs=109.1
Q ss_pred cccceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccC--CCcEEEEeeccc
Q 001298 491 ELENTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTS--SGHIIIRGWCEN 568 (1105)
Q Consensus 491 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~--~G~i~v~~~~~~ 568 (1105)
+++.+++++.+++++++..+... ..+++++.+++++..+ .+.+|+.+|.|||.|||+||+||++ .|.|.|.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678999999999999998887 8889999998877655 4899999999999999999999997 667777653221
Q ss_pred cCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCc
Q 001298 569 LDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGT 648 (1105)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~Gt 648 (1105)
.... ........+.|+|.|+|+||+++.++++|++|++.+ .+|+
T Consensus 80 ~~~~------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~------~~g~ 123 (160)
T 1r62_A 80 QLTL------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EGGT 123 (160)
T ss_dssp EEEE------------------------------TTEEEEEEEEEEEEEECTTC--------------------------
T ss_pred cccc------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC------CCCC
Confidence 0000 000112257899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 649 GLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 649 GLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
||||++||++++.|||+|.++|.+++ |+|+|.||+.
T Consensus 124 GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 124 GLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred ccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 99999999999999999999999876 9999999973
No 22
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.88 E-value=7.8e-21 Score=209.26 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=155.5
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++.++++|+.++++++..+.+.++. ....+++..............+.|.+-++.||...+ +..........
T Consensus 48 ~~dlvllD~~mP~~~G~~~~~~lr~------~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~-~~~~~~~~~~~- 119 (259)
T 3luf_A 48 EYVVALVDLTLPDAPSGEAVKVLLE------RGLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS-LQYAVGLVHRL- 119 (259)
T ss_dssp TEEEEEEESCBTTBTTSHHHHHHHH------TTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH-HHHHHHHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh------CCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH-HHHHHHhhhhH-
Confidence 5689999999999998654444432 123344555555556666777899999999996432 22221111000
Q ss_pred cccccccccccCCCCCCcccccccccccccchhcccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCC
Q 001298 858 ILGMQNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSS 937 (1105)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1105)
T Consensus 120 -------------------------------------------------------------------------------- 119 (259)
T 3luf_A 120 -------------------------------------------------------------------------------- 119 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001298 938 NSSSNQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1017 (1105)
Q Consensus 938 ~~~~~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1105)
......+||||||++.++..+...|+..|+.|..+.||++|++.+.. ..+|
T Consensus 120 -------~~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~----------------------~~~~ 170 (259)
T 3luf_A 120 -------YLNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ----------------------HPAI 170 (259)
T ss_dssp -------HHHTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------CTTE
T ss_pred -------hhcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------------------CCCC
Confidence 00123689999999999999999999999999999999999999864 1248
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1018 DLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1018 DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+||+|++||+|||+|++++||+..+ ..++|||++|++...+...+|+++||++||.||++.++|..+|.++++...
T Consensus 171 dlvllD~~mP~~dG~~l~~~lr~~~~---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 171 RLVLVDYYMPEIDGISLVRMLRERYS---KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSCCSSSCHHHHHHHHHHHCC---TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhccC---CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 99999999999999999999998643 246899999999999999999999999999999999999999999886543
No 23
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.86 E-value=2.6e-23 Score=202.34 Aligned_cols=115 Identities=20% Similarity=0.342 Sum_probs=102.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+.+|||||||++.++..++.+|++.||+|. .|.||++|++.++. .+||+||+|++|
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~-----------------------~~~DlvllDi~m 63 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK-----------------------GQFDIAIIDVNL 63 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH-----------------------CCSSEEEECSSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------------CCCCEEEEecCC
Confidence 357999999999999999999999999985 79999999999975 479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+|||+|++++||+ .++|||++||+++.+. +.++|+++||.|||+.++|.++|.++.++
T Consensus 64 P~~~G~el~~~lr~-------~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 64 DGEPSYPVADILAE-------RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp SSCCSHHHHHHHHH-------TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred CCCCHHHHHHHHHc-------CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 99999999999996 2489999999886543 45789999999999999999999887764
No 24
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=1.4e-21 Score=204.09 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=120.2
Q ss_pred ceeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhccc-------------CCCcE
Q 001298 494 NTEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------------SSGHI 560 (1105)
Q Consensus 494 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-------------~~G~i 560 (1105)
.+++++.++++++...+...+..+++.+.++++.........+..++.|||.|||.||+||+ ..|.|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35799999999999999999999998888887654322222334556666999999999995 35566
Q ss_pred EEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhH-------------
Q 001298 561 IIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKW------------- 627 (1105)
Q Consensus 561 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l------------- 627 (1105)
.|.+... ...+.|+|.|+|+||+++.+
T Consensus 82 ~I~~~~~----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~ 121 (189)
T 1i58_A 82 ILSARHE----------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121 (189)
T ss_dssp EEEEEEE----------------------------------------TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHH
T ss_pred EEEEEec----------------------------------------CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhh
Confidence 6654221 12478999999999999987
Q ss_pred -----------hhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEec
Q 001298 628 -----------ETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLL 684 (1105)
Q Consensus 628 -----------~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl 684 (1105)
+++|+|||+.... .+..+|+||||+||+++++.|||+|.++|.+++||+|++.||+
T Consensus 122 ~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 122 KAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999975432 2234689999999999999999999999999999999999997
No 25
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=2.8e-20 Score=179.71 Aligned_cols=119 Identities=27% Similarity=0.465 Sum_probs=110.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|++.||+|..+.||.+|++.++. .+||+||+|++||+|
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~~p~~ 59 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-----------------------FTPDLIVLXIMMPVM 59 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT-----------------------BCCSEEEECSCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeccCCCC
Confidence 489999999999999999999999999999999999999853 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|+++++
T Consensus 60 ~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 60 DGFTVLKKLQEKEE---WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CHHHHHHHHHTSTT---TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhccc---ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999997532 356999999999999999999999999999999999999999998875
No 26
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=8.3e-20 Score=179.82 Aligned_cols=125 Identities=22% Similarity=0.383 Sum_probs=112.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..||.|..+.|+.+|++.+.. ..||+||+|+.||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp~ 60 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK-----------------------NLPDALICDVLLPG 60 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 3689999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
|||++++++||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 61 ~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~~ 128 (136)
T 3t6k_A 61 IDGYTLCKRVRQHPL---TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTIE 128 (136)
T ss_dssp SCHHHHHHHHHHSGG---GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCC---cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCCC
Confidence 999999999997532 25699999999999999999999999999999999999999999999876543
No 27
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.83 E-value=1.1e-18 Score=191.55 Aligned_cols=121 Identities=28% Similarity=0.590 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+++||||||++.++..+..+|++.||+|..+.||.+|++.+.. ..||+||||++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~dlvl~D~~mp 184 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-----------------------NHIDIVLSDVNMP 184 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH-----------------------SCCSEEEEEESSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 45799999999999999999999999999999999999999964 3699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|||++++++||+.. +++|||++|++...+...+|+++||++||.||++.++|..+|.+++++.
T Consensus 185 ~~~G~~l~~~ir~~~-----~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 185 NMDGYRLTQRIRQLG-----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp SSCCHHHHHHHHHHH-----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999853 3599999999999999999999999999999999999999999887643
No 28
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=1.5e-19 Score=177.28 Aligned_cols=126 Identities=33% Similarity=0.554 Sum_probs=110.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
++||||||++.++..++.+|+..|+ .|..+.+|.+|++.+..... ...+||+||+|++||+
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------------------~~~~~dlvllD~~mp~ 64 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------------------KGENYNMIFMDVQMPK 64 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------------------HTCCCSEEEECSCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------------------cCCCCCEEEEeCCCCC
Confidence 5899999999999999999999997 58899999999998864210 0136999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|||++++++||+... ..+|||++|++...+...+|+++|+++||.||++.++|..+|.+++....
T Consensus 65 ~~G~~~~~~lr~~~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 129 (133)
T 2r25_B 65 VDGLLSTKMIRRDLG----YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 129 (133)
T ss_dssp SCHHHHHHHHHHHSC----CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC-
T ss_pred CChHHHHHHHHhhcC----CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999996321 35899999999999999999999999999999999999999999886553
No 29
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.82 E-value=1.4e-20 Score=210.35 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=109.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
+.+||||||++.++..++.+|+..||.|. .|.||.+|++.+.. .+|||||||++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~-----------------------~~~dlvl~D~~MP 216 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-----------------------RTPGLVLADIQLA 216 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESCCT
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEcCCCC
Confidence 35899999999999999999999999999 99999999999975 3799999999999
Q ss_pred -CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1028 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1028 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
+|||+|++++||+.. ++|||++||+. ++..+|+++|||+||.||++.++|..+|.++++.....
T Consensus 217 d~mdG~e~~~~ir~~~------~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 281 (286)
T 3n0r_A 217 DGSSGIDAVKDILGRM------DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPRR 281 (286)
T ss_dssp TSCCTTTTTHHHHHHT------TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHhcC------CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCcc
Confidence 899999999999863 59999999985 45778999999999999999999999999999776543
No 30
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.82 E-value=1.9e-19 Score=173.08 Aligned_cols=117 Identities=32% Similarity=0.471 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlii~D~~~p~~ 59 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-----------------------LQPDLILLDIMLPNK 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------TCCSEEEEETTSTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999999864 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
||++++++||+. .++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 60 ~g~~~~~~lr~~------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 60 DGVEVCREVRKK------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp HHHHHHHHHHTT------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhc------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999963 248999999999999999999999999999999999999999998865
No 31
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.82 E-value=1.9e-19 Score=175.19 Aligned_cols=124 Identities=22% Similarity=0.433 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+++||||||++..+..++.+|++.|+. +..+.++.+|++.+.. ..+||+||+|++|
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------------------~~~~dlvi~D~~~ 61 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------------------NADTKVLITDWNM 61 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------------------CTTCCEEEECSCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------------------CCCCCEEEEeCCC
Confidence 3578999999999999999999999995 8999999999998864 2369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+|||++++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|++++++.
T Consensus 62 p~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~~ 128 (129)
T 3h1g_A 62 PEMNGLDLVKKVRSDSR---FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp SSSCHHHHHHHHHTSTT---CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHhcCC---CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhccC
Confidence 99999999999997532 25699999999999999999999999999999999999999999998653
No 32
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.4e-19 Score=178.31 Aligned_cols=127 Identities=27% Similarity=0.515 Sum_probs=108.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++++||||||++..+..++.+|+..|+.|..+.++++|++.+.. ..||+||+|+.|
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~m 68 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-----------------------EDYDAVIVDLHM 68 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 356899999999999999999999999999999999999999864 379999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+|||++++++||+.... ..+++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++.....
T Consensus 69 p~~~g~~~~~~lr~~~~~-~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~ 138 (143)
T 3m6m_D 69 PGMNGLDMLKQLRVMQAS-GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVSTR 138 (143)
T ss_dssp SSSCHHHHHHHHHHHHHT-TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhchhc-cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999975322 2356899999999999999999999999999999999999999999876543
No 33
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.78 E-value=4e-19 Score=184.65 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=109.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+.+||||||++..+..++.+|+..||.|..|.||.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~lp 62 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA-----------------------EKFEFITVXLHLG 62 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT-----------------------SCCSEEEECSEET
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-----------------------CCCCEEEEeccCC
Confidence 35799999999999999999999999999999999999998853 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 63 NDSGLSLIAPLCDLQ-----PDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp TEESHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CccHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 999999999999752 46999999999999999999999999999999999999999977654
No 34
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=5.8e-18 Score=163.66 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=111.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~D~~l~~ 59 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD-----------------------VRNGVLVTDLRMPD 59 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG-----------------------CCSEEEEEECCSTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCC
Confidence 3689999999999999999999999999999999999998753 46999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++..
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (126)
T 1dbw_A 60 MSGVELLRNLGDLK-----INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123 (126)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999742 46899999999999999999999999999999999999999999887653
No 35
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.78 E-value=4.1e-18 Score=171.37 Aligned_cols=123 Identities=32% Similarity=0.448 Sum_probs=113.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~l~~ 63 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-----------------------TRPDLIISDVLMPE 63 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT-----------------------CCCSEEEEESCCSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999999853 47999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|++++++||+... .+++|||++|+....+...+|+++|+++||.||++.++|..+|.+++++..
T Consensus 64 ~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 64 MDGYALCRWLKGQPD---LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp SCHHHHHHHHHHSTT---TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCC---cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998532 356999999999999999999999999999999999999999999987554
No 36
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=3.2e-18 Score=164.43 Aligned_cols=121 Identities=34% Similarity=0.511 Sum_probs=105.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+... .||+||+|+.||+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~D~~l~~~ 58 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN-----------------------KPDLILMDIQLPEI 58 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-----------------------CCSEEEEESBCSSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-----------------------CCCEEEEeCCCCCC
Confidence 4899999999999999999999999999999999999988642 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 59 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 59 SGLEVTKWLKEDDD---LAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp BHHHHHHHHHHSTT---TTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCcc---ccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 99999999997432 25699999999999889999999999999999999999999999988654
No 37
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=1.4e-18 Score=169.99 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=99.5
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCc
Q 001298 497 FDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTA 576 (1105)
Q Consensus 497 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~ 576 (1105)
+++.+.++.+. ..+..+++++.++.+...+.....++..+.|++.||++||+||++.+.|.|.+...
T Consensus 2 v~l~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~--------- 68 (128)
T 3ehg_A 2 IRLKDELINIK----QILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL--------- 68 (128)
T ss_dssp CCHHHHHHHHH----HHHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE---------
T ss_pred ccHHHHHHHHH----HHHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe---------
Confidence 45555555544 45567889988887654443345688999999999999999999888888765321
Q ss_pred cCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHH
Q 001298 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVR 656 (1105)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk 656 (1105)
...+.|+|.|+|+||+++.+ .|+||||++||
T Consensus 69 -------------------------------~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 69 -------------------------------WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGMR 99 (128)
T ss_dssp -------------------------------TTEEEEEEEESSCCCSCSSC------------------CCTTSHHHHHH
T ss_pred -------------------------------CCEEEEEEEECCcCcCcccC------------------CCCCccHHHHH
Confidence 12478999999999998754 48899999999
Q ss_pred HHHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 657 TLVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 657 ~LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
++++.|||+|.++|.+ ||+|++.||+.
T Consensus 100 ~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp HHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred HHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 9999999999999988 99999999974
No 38
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.5e-18 Score=167.58 Aligned_cols=125 Identities=20% Similarity=0.364 Sum_probs=103.8
Q ss_pred eeecHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCC
Q 001298 495 TEFDLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKN 574 (1105)
Q Consensus 495 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~ 574 (1105)
+.++|.+++++++..+ ..+++.+.++++...+.....|+..|.||+.||++||+||++.|.|.|.+..
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~-------- 70 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV-------- 70 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE--------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--------
Confidence 5688999999988876 6778888887766554334456899999999999999999988888876532
Q ss_pred CccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHH
Q 001298 575 TAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSI 654 (1105)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaI 654 (1105)
.+ . +.|+|.|+|+||+++. +||||+|
T Consensus 71 -------------------------------~~-~-~~i~v~D~G~gi~~~~---------------------~GlGL~i 96 (129)
T 3zxo_A 71 -------------------------------DD-D-LCIEVTDNGRGMPDEF---------------------TGSGLTN 96 (129)
T ss_dssp -------------------------------SS-E-EEEEEEECCCCCTTTT---------------------CSHHHHH
T ss_pred -------------------------------cC-C-EEEEEecCCCCCCccc---------------------CCcCHHH
Confidence 12 2 7799999999998765 5999999
Q ss_pred HHHHHHHcCCEEEEEEeCC-CceEEEEEEecC
Q 001298 655 VRTLVNKMGGEIKVVKKNS-PGTLMQLYLLLG 685 (1105)
Q Consensus 655 vk~LVe~~gG~I~v~S~~g-~GT~f~~~lpl~ 685 (1105)
||++++.|||++.+.+.++ +|++|++.||+.
T Consensus 97 ~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 97 LRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp HHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred HHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 9999999999999999999 999999999974
No 39
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.77 E-value=8.7e-18 Score=160.64 Aligned_cols=119 Identities=26% Similarity=0.401 Sum_probs=109.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlil~D~~l~~~ 57 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-----------------------HIPDIAIVDLGLPDE 57 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 379999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|+++++++|+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 58 DGLSLIRRWRSND-----VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp CHHHHHHHHHHTT-----CCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999642 4589999999999999999999999999999999999999999988653
No 40
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=6.2e-18 Score=162.77 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=109.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-----------------------ERPDLVLLDMKIPGM 60 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESCCTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-----------------------cCCCEEEEecCCCCC
Confidence 489999999999999999999999999999999999999864 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|+++++..
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1srr_A 61 DGIEILKRMKVID-----ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLK 122 (124)
T ss_dssp CHHHHHHHHHHHC-----TTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHhC-----CCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhccc
Confidence 9999999999752 4689999999999999999999999999999999999999999887643
No 41
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=6.7e-18 Score=164.91 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=109.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN-----------------------EFFNLALFXIKLPDM 60 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSBCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 61 EGTELLEKAHKLR-----PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhC-----CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 9999999999752 468999999999999999999999999999999999999999988754
No 42
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=8.5e-18 Score=160.68 Aligned_cols=116 Identities=26% Similarity=0.486 Sum_probs=107.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.+||||||++..+..++.+|+..|+. +..+.++.+|++.+... +||+||+|+.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~-----------------------~~dlil~D~~l~~ 59 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----------------------KPDIVTMDITMPE 59 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEECSCGG
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc-----------------------CCCEEEEeCCCCC
Confidence 58999999999999999999999999 56899999999998652 6999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++
T Consensus 60 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 60 MNGIDAIKEIMKID-----PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp GCHHHHHHHHHHHC-----TTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999753 4589999999999999999999999999999999999999998865
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=8.6e-18 Score=162.53 Aligned_cols=121 Identities=22% Similarity=0.456 Sum_probs=109.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.++||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~ 60 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-----------------------GGYGFVISDWNMP 60 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT-----------------------CCCCEEEEESCCS
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 46899999999999999999999999 79999999999998842 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|+|++++++||+... .+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++++
T Consensus 61 ~~~g~~l~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 61 NMDGLELLKTIRAXXA---MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp SSCHHHHHHHHHC--C---CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 9999999999997432 2568999999999999999999999999999999999999999988764
No 44
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.76 E-value=4.4e-18 Score=167.67 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=112.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
..+||||||++..+..++.+|+. .|++|..+.++.+|++.+.. ..+||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~ 61 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD----------------------LDSITLIIMDIAFP 61 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT----------------------CCCCSEEEECSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc----------------------CCCCcEEEEeCCCC
Confidence 36999999999999999999999 99999999999999998742 14799999999999
Q ss_pred -CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1028 -KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1028 -~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
+++|++++++||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 62 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 62 VEKEGLEVLSAIRNNSR---TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp SHHHHHHHHHHHHHSGG---GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CCCcHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999998422 25699999999999999999999999999999999999999999999876543
No 45
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.76 E-value=1.5e-17 Score=158.54 Aligned_cols=117 Identities=27% Similarity=0.461 Sum_probs=108.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 58 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-----------------------EQPDIIILDLMLPEI 58 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEECSSCSSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh-----------------------CCCCEEEEeccCCCC
Confidence 379999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|.+++++
T Consensus 59 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 59 DGLEVAKTIRKT------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp CHHHHHHHHHHH------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhC------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999963 358999999999999999999999999999999999999999998865
No 46
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.76 E-value=1.2e-17 Score=163.78 Aligned_cols=126 Identities=19% Similarity=0.444 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+ |+||+|+.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~-dlvllD~~lp 61 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH-----------------------EH-KVVFMDVCMP 61 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT-----------------------TC-SEEEEECCSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------cC-CEEEEeCCCC
Confidence 46799999999999999999999999999999999999987732 24 9999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+|||++++++||+..+......+|||++|++...+...+|+++|+++||.||++.++|..+|.+++++..
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 131 (136)
T 1dcf_A 62 GVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRV 131 (136)
T ss_dssp TTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCC
T ss_pred CCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchhh
Confidence 9999999999995322111122468899999999999999999999999999999999999999987653
No 47
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.76 E-value=1.5e-17 Score=159.42 Aligned_cols=118 Identities=27% Similarity=0.427 Sum_probs=109.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~l~~~ 59 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-----------------------QSVDLILLDINLPDE 59 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+. +++|||++|++...+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 60 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 60 NGLMLTRALRER------STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp CHHHHHHHHHTT------CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhc------CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 999999999972 3589999999999999999999999999999999999999999988653
No 48
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.76 E-value=8.9e-18 Score=183.22 Aligned_cols=121 Identities=26% Similarity=0.393 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
...+||||||++..+..++.+|+..||+|..+.|+.+|++.+... +||+||+|++||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-----------------------~~dlvllD~~lp 78 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET-----------------------RPDAVILDVXMP 78 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-----------------------CCCEEEEeCCCC
Confidence 347999999999999999999999999999999999999998752 799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|||++++++||+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|+.++++.
T Consensus 79 ~~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 79 GMDGFGVLRRLRADG-----IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp SSCHHHHHHHHHHTT-----CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999752 4689999999999999999999999999999999999999999998653
No 49
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.76 E-value=1.2e-17 Score=163.36 Aligned_cols=122 Identities=23% Similarity=0.394 Sum_probs=108.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+|||+||++..+..++.+|+..| +.+..+.++.+|++.+... +||+||+|+.||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~-----------------------~~dlvilD~~lp 60 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY-----------------------NPNVVILDIEMP 60 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH-----------------------CCSEEEECSSCS
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc-----------------------CCCEEEEecCCC
Confidence 489999999999999999999887 6678899999999998652 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
+|+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|++++++....
T Consensus 61 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 127 (133)
T 3b2n_A 61 GMTGLEVLAEIRKKH-----LNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEG 127 (133)
T ss_dssp SSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHC-----CCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCcc
Confidence 999999999999742 4699999999999999999999999999999999999999999998765433
No 50
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=1.6e-17 Score=159.44 Aligned_cols=117 Identities=25% Similarity=0.391 Sum_probs=109.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvi~D~~l~~~ 60 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-----------------------YDINLVIMDINLPGK 60 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+. +++|||++|++.......+++++|+++||.||++.++|..+|++++++
T Consensus 61 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 61 NGLLLARELREQ------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp CHHHHHHHHHHH------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999974 258999999999999999999999999999999999999999988765
No 51
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.75 E-value=9.4e-18 Score=162.90 Aligned_cols=121 Identities=28% Similarity=0.443 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+.+||||||++..+..++.+|+..|+.+..+.++.+|++.++. .+||+||+|+.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-----------------------FTPDLMICDIAMP 62 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT-----------------------CCCSEEEECCC--
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 45799999999999999999999999999999999999999853 4799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1096 (1105)
+++|++++++||+.. +++|||++|++...+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 63 RMNGLKLLEHIRNRG-----DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ---CHHHHHHHHHTT-----CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999742 468999999999999999999999999999999 9999999999998754
No 52
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.75 E-value=1.4e-17 Score=167.98 Aligned_cols=122 Identities=21% Similarity=0.412 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..++||||||++..+..++.+|+..|+.+. .+.++.+|++.+... ...||+||+|+.|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~---------------------~~~~dliilD~~l 93 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH---------------------YPNIDIVTLXITM 93 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------------------GGGCCEEEECSSC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------------------CCCCCEEEEeccC
Confidence 347999999999999999999999999998 999999999999752 1158999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+++|++++++||+.. +.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+++++
T Consensus 94 ~~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 157 (157)
T 3hzh_A 94 PKMDGITCLSNIMEFD-----KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFVK 157 (157)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHhhC-----CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999753 468999999999999999999999999999999999999999988753
No 53
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.75 E-value=6.6e-18 Score=166.23 Aligned_cols=123 Identities=28% Similarity=0.455 Sum_probs=111.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 62 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR-----------------------RPYAAMTVDLNLPD 62 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH-----------------------SCCSEEEECSCCSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4699999999999999999999999999999999999999965 37999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHH-HHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~-~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|++++++||+... .+++|||++|+....+... +++++|+++||.||++.++|..+|.+++++..
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 63 QDGVSLIRALRRDSR---TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp SCHHHHHHHHHTSGG---GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCcc---cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998432 2569999999998887777 89999999999999999999999999997654
No 54
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.75 E-value=1.8e-17 Score=165.83 Aligned_cols=129 Identities=25% Similarity=0.403 Sum_probs=110.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.++.... .......+||+||+|+.|
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--------------~~~~~~~~~dliilD~~l 69 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--------------SGRVSAGRAQLVLLDLNL 69 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--------------SSGGGTTCBEEEEECSBC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--------------ccccccCCCCEEEEeCCC
Confidence 46999999999999999999999998 89999999999999862100 000013579999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|+|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.++.+
T Consensus 70 ~~~~g~~~~~~lr~~~~---~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 70 PDMTGIDILKLVKENPH---TRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp SSSBHHHHHHHHHHSTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhccc---ccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999998432 357999999999999999999999999999999999999999988764
No 55
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.75 E-value=2.2e-17 Score=164.94 Aligned_cols=128 Identities=28% Similarity=0.407 Sum_probs=110.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.... .......||+||+|+.|
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~----------------~~~~~~~~dlillD~~l 71 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG----------------EYENSPRPNLILLDLNL 71 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG----------------GGTTCCCCSEEEECSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc----------------ccccCCCCCEEEEeCCC
Confidence 36899999999999999999999887 8999999999999885210 00001369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+|||++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++.+.
T Consensus 72 p~~~g~~l~~~l~~~~~---~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPD---LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp SSSCHHHHHHHHHHCTT---TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCcC---cCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999997421 2569999999999999999999999999999999999999999988753
No 56
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.75 E-value=1.2e-17 Score=162.22 Aligned_cols=122 Identities=21% Similarity=0.358 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..++.+|+.. |+.+. .+.++.+|++.+... +||+||+|+.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~-----------------------~~dlvllD~~l~ 59 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK-----------------------RPDILLLDIIMP 59 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC-----------------------CCCEEEEecCCC
Confidence 58999999999999999999987 88875 799999999998642 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
+|+|++++++||+.. .+.+|||++|++...+...+++++|+++||.||++.++|..+|++++++...
T Consensus 60 ~~~g~~~~~~l~~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 126 (130)
T 1dz3_A 60 HLDGLAVLERIRAGF----EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTTP 126 (130)
T ss_dssp SSCHHHHHHHHHHHC----SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHhcC----CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCCC
Confidence 999999999999731 1458999999999999999999999999999999999999999999877653
No 57
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.75 E-value=7.3e-18 Score=163.27 Aligned_cols=121 Identities=24% Similarity=0.413 Sum_probs=110.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~ 62 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-----------------------NPHHLVISDFNMP 62 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT-----------------------SCCSEEEECSSSC
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc-----------------------CCCCEEEEeCCCC
Confidence 36899999999999999999999999 89999999999998863 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 63 KMDGLGLLQAVRANPA---TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp SSCHHHHHHHHTTCTT---STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhcCcc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999997532 2569999999999999999999999999999999999999999998765
No 58
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.75 E-value=7.2e-18 Score=163.03 Aligned_cols=120 Identities=22% Similarity=0.303 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l~~~ 60 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-----------------------RGYDAVFIDLNLPDT 60 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999999975 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+... .+++|||++|+....+. .+++++|+++||.||++.++|.+++....++.
T Consensus 61 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 61 SGLALVKQLRALPM---EKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp BHHHHHHHHHHSCC---SSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHhhhc---cCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999999998632 25699999999998888 89999999999999999999999999887655
No 59
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.75 E-value=3e-17 Score=160.67 Aligned_cols=123 Identities=18% Similarity=0.244 Sum_probs=111.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..|++|..+.++.+|+..+... .+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~----------------------~~~dlvi~D~~l~~ 64 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ----------------------KRIGLMITDLRMQP 64 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC----------------------TTEEEEEECSCCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC----------------------CCCcEEEEeccCCC
Confidence 46999999999999999999999999999999999999988642 34999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|++++++||+.. .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++..+..
T Consensus 65 ~~g~~~~~~l~~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 65 ESGLDLIRTIRASE----RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp SCHHHHHHHHHTST----TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 99999999999752 246999999999999999999999999999999999999999999987664
No 60
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.74 E-value=2.2e-17 Score=165.52 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~D~~l~ 69 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS-----------------------REVDLVISAAHLP 69 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCS
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc-----------------------CCCCEEEEeCCCC
Confidence 35799999999999999999999999999999999999999964 3799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+++|++++++||+.. +++|||++|+....+...+++++| +++||.||++.++|..+|.+++++
T Consensus 70 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 70 QMDGPTLLARIHQQY-----PSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SSCHHHHHHHHHHHC-----TTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHC-----CCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999742 469999999999999999999999 999999999999999999988753
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.74 E-value=6.6e-18 Score=167.64 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcC-CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC-CCccEEEEcCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT-PRFDLILMDCQ 1025 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g-~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlIlmDi~ 1025 (1105)
.+.+||||||++..+..++.+|+..| |.|..+.++.+|+..+.. . .+||+||+|+.
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~----------------------~~~~~dlvi~D~~ 76 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD----------------------GLDAFDILMIDGA 76 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH----------------------HHTTCSEEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh----------------------cCCCCCEEEEeCC
Confidence 45799999999999999999999999 999999999999887643 1 37999999999
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
||+|+|++++++||+.. +++|||++|+....+...+|+++|+++||.||++.++|..+|.+++++..
T Consensus 77 l~~~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 77 ALDTAELAAIEKLSRLH-----PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp TCCHHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred CCCccHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999753 46999999999999999999999999999999999999999999998764
No 62
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.74 E-value=2.2e-17 Score=162.55 Aligned_cols=122 Identities=30% Similarity=0.474 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~D~~l~~~ 60 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA-----------------------TPPDLVLLDIMMEPM 60 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc-----------------------cCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+|++++++||+... .+++|||++|+.........++.+|+++||.||++.++|..+|.+++++..
T Consensus 61 ~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 61 DGWETLERIKTDPA---TRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHcCcc---cCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999997532 246999999998877777777888899999999999999999999886543
No 63
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.9e-17 Score=162.86 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=108.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l~~~ 61 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-----------------------NKYDLIFLEIILSDG 61 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------CCCSEEEEESEETTE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeCCCCCC
Confidence 689999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+.. .+|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 62 ~g~~l~~~l~~~~------~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 62 DGWTLCKKIRNVT------TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EHHHHHHHHHTTC------CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCC------CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999641 58999999999999999999999999999999999999999988754
No 64
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=1.9e-17 Score=163.85 Aligned_cols=121 Identities=23% Similarity=0.469 Sum_probs=110.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..+||||||++..+..++.+|+..|+. |..+.++.+|++.+.. .+||+||+|+.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l 61 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-----------------------AKYDLIILDIGL 61 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT-----------------------CCCSEEEECTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc-----------------------CCCCEEEEeCCC
Confidence 469999999999999999999999987 8999999999999853 479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~ 1095 (1105)
|+++|++++++||+... .+++|||++|+..+.+...+|+++|+++||.||+ +.++|..+|.+++++
T Consensus 62 ~~~~g~~~~~~lr~~~~---~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 62 PIANGFEVMSAVRKPGA---NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp GGGCHHHHHHHHHSSST---TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhccc---ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 99999999999997432 3569999999999999999999999999999999 999999999988754
No 65
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.74 E-value=7.2e-18 Score=165.61 Aligned_cols=122 Identities=10% Similarity=0.165 Sum_probs=111.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..||+|..+.++.+|++.++ ..+||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------------------~~~~dlvi~D~~l~~ 62 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-----------------------SDDAIGMIIEAHLED 62 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-----------------------CTTEEEEEEETTGGG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-----------------------ccCCCEEEEeCcCCC
Confidence 369999999999999999999999999999999999998774 247999999999999
Q ss_pred --CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1029 --MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1029 --mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
++|++++++||+.. +++|||++|++...+...+|+++|+++||.||++.++|..+|.++.++...
T Consensus 63 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 63 KKDSGIELLETLVKRG-----FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp BTTHHHHHHHHHHHTT-----CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHhCC-----CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999753 469999999999999999999999999999999999999999999876643
No 66
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=2.3e-17 Score=162.53 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=109.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-----------------------~~dlvllD~~l~~~ 61 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS-----------------------KPQLIILDLKLPDM 61 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSBCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc-----------------------CCCEEEEecCCCCC
Confidence 3899999999999999999999999999999999999998652 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 62 ~g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 62 SGEDVLDWINQND-----IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp BHHHHHHHHHHTT-----CCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999742 468999999999999999999999999999999999999999888753
No 67
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.74 E-value=3.4e-17 Score=160.08 Aligned_cols=120 Identities=28% Similarity=0.441 Sum_probs=110.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 60 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET-----------------------EKPDLIVLDVMLPKL 60 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESSCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh-----------------------cCCCEEEEecCCCCC
Confidence 589999999999999999999999999999999999998864 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+|++++++||+.. +.+|||++|++.......+++++|+++||.||++.++|..+|.+++++..
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 61 DGIEVCKQLRQQK-----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCC-----CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999999999752 35899999999988888999999999999999999999999999987654
No 68
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.74 E-value=2e-17 Score=161.10 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=105.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+ .|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~~ 59 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA-----------------------HPPDVLISDVNMDG 59 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSSCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCC
Confidence 3699999999999999999999 89999999999999999865 37999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|++++++||+... .+++|||++|+....+. .+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 60 MDGYALCGHFRSEPT---LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp SCHHHHHHHHHHSTT---TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCCc---cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 999999999998532 25699999999988777 899999999999999999999999999997654
No 69
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.74 E-value=4.7e-17 Score=159.05 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=111.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+..... ......||+||+|+.|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~----------------~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGE----------------YANASRPDLILLXLNL 65 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGG----------------GGSCCCCSEEEECSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccc----------------cccCCCCcEEEEecCC
Confidence 46899999999999999999999998 99999999999999853000 0001479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 66 ~~~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPT---LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp SSSCHHHHHHHHHHSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcc---cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998532 24699999999999999999999999999999999999999999987644
No 70
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.74 E-value=3.1e-17 Score=163.82 Aligned_cols=122 Identities=20% Similarity=0.375 Sum_probs=111.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcC--CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVG--ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
..++||||||++..+..++.+|+..| +.|..+.++.+|++.+.. ..||+||+|+.
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlii~D~~ 75 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK-----------------------ESVDIAILDVE 75 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT-----------------------SCCSEEEECSS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc-----------------------cCCCEEEEeCC
Confidence 34799999999999999999999888 789999999999999853 47999999999
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
||+++|++++++||+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 76 l~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 76 MPVKTGLEVLEWIRSEK-----LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999752 46999999999999999999999999999999999999999999997654
No 71
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=1.6e-17 Score=161.98 Aligned_cols=121 Identities=19% Similarity=0.346 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
++||||||++..+..++.+|+..|+.+. .+.++.+|++.+... +||+||+|+.||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~l~~ 58 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL-----------------------KPDIVIIDVDIPG 58 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH-----------------------CCSEEEEETTCSS
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc-----------------------CCCEEEEecCCCC
Confidence 5899999999999999999999999998 899999999998753 7999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
++|++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++...
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 59 VNGIQVLETLRKRQ-----YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp SCHHHHHHHHHHTT-----CCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CChHHHHHHHHhcC-----CCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 99999999999752 468999999999998999999999999999999999999999999977643
No 72
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.73 E-value=3.6e-17 Score=161.50 Aligned_cols=130 Identities=16% Similarity=0.261 Sum_probs=113.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..+..+|+..|+ .|..+.++.+|++.+.... ....+||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~------------------~~~~~~dlvi~D~~l 70 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY------------------AAGRWPSIICIDINM 70 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH------------------TSSCCCSEEEEESSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh------------------ccCCCCCEEEEcCCC
Confidence 46899999999999999999999999 9999999999999987421 012479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+++|++++++||+.... ..+++|||++|+....+...+++++| +++||.||++.++|..+|.++.....
T Consensus 71 ~~~~g~~~~~~l~~~~~~-~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQP-MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp SSSCHHHHHHHHHHHCGG-GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHhhhh-ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999984311 12569999999999999999999999 99999999999999999999987654
No 73
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.73 E-value=2.2e-17 Score=161.80 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=111.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.++.. +||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~-----------------------~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH-----------------------APDVIITDIRMPK 63 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSCSS
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc-----------------------CCCEEEEeCCCCC
Confidence 47899999999999999999999999999999999999999752 7999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.++.++.
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 64 LGGLEMLDRIKAGG-----AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp SCHHHHHHHHHHTT-----CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999753 4689999999999999999999999999999999999999999998654
No 74
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.73 E-value=3.5e-17 Score=156.26 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=108.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..++.+|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~D~~l~~~ 58 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-----------------------RKPDLIILDLGLPDG 58 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------HCCSEEEEESEETTE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999998764 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+. +++|||++|++...+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 59 ~g~~~~~~l~~~------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 59 DGIEFIRDLRQW------SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhC------CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 999999999942 3589999999999999999999999999999999999999999987653
No 75
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.73 E-value=7.6e-17 Score=158.59 Aligned_cols=124 Identities=20% Similarity=0.356 Sum_probs=112.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-cCCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEK-VGAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~-~g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..+||||||++..+..++.+|+. .|+. |..+.++.+|++.+.. .+||+||+|+.|
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l 64 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT-----------------------VKPDVVMLDLMM 64 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH-----------------------TCCSEEEEETTC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh-----------------------cCCCEEEEeccc
Confidence 47999999999999999999999 9999 9999999999999875 369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
|+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|++++++...
T Consensus 65 ~~~~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 65 VGMDGFSICHRIKSTPA---TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp TTSCHHHHHHHHHTSTT---TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCcHHHHHHHHHhCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999997422 3569999999999999999999999999999999999999999999977654
No 76
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.73 E-value=6.9e-17 Score=159.49 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=110.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+... ...||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~---------------------~~~~dlvi~d~~l~~~ 62 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN---------------------CNSIDVVITDMKMPKL 62 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT---------------------TTTCCEEEEESCCSSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC---------------------CCCCCEEEEeCCCCCC
Confidence 6899999999999999999999999999999999999998631 2479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+.. +++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 63 SGMDILREIKKIT-----PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CHHHHHHHHHHHC-----TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 469999999999999999999999999999999999999999988753
No 77
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.73 E-value=1.3e-17 Score=164.51 Aligned_cols=119 Identities=29% Similarity=0.394 Sum_probs=108.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ...||+||+|+.||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~~ 62 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG----------------------GWYPDLILMDIELGE 62 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCSEEEEESSCSS
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc----------------------CCCCCEEEEeccCCC
Confidence 4799999999999999999999999999999999999999863 247999999999995
Q ss_pred -CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1029 -MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1029 -mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
++|++++++||+. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 63 ~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 63 GMDGVQTALAIQQI------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp SCCHHHHHHHHHHH------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999974 358999999999888888999999999999999999999999988764
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.73 E-value=8.8e-18 Score=194.16 Aligned_cols=118 Identities=24% Similarity=0.328 Sum_probs=110.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 001298 951 RILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD 1030 (1105)
Q Consensus 951 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md 1030 (1105)
+||||||++.++..++.+|+..||.|..|.||.+|++.+.. ..||+||+|++||+||
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllDi~mP~~d 58 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE-----------------------LFFPVIVLDVWMPDGD 58 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------BCCSEEEEESEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCCC
Confidence 79999999999999999999999999999999999999975 3799999999999999
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|++++++||+.. +++|||++|++.+.+...+|+++||++||.||++.++|..+|.++++..
T Consensus 59 G~ell~~lr~~~-----~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 59 GVNFIDFIKENS-----PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp TTTHHHHHHHHC-----TTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-----CCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999753 4689999999999999999999999999999999999999999988643
No 79
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.73 E-value=1.2e-17 Score=161.04 Aligned_cols=122 Identities=31% Similarity=0.474 Sum_probs=110.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-----------------------~~~~dlvi~D~~l~~~ 59 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-----------------------EPWPDLILLAWMLPGG 59 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-----------------------SSCCSEEEEESEETTE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-----------------------ccCCCEEEEecCCCCC
Confidence 48999999999999999999999999999999999998764 2479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 124 (127)
T 2jba_A 60 SGIQFIKHLRRESM---TRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS 124 (127)
T ss_dssp EHHHHHHHHHTSTT---TTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhCcc---cCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhccc
Confidence 99999999997532 246999999999988889999999999999999999999999999987654
No 80
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.73 E-value=3.3e-18 Score=167.63 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=109.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcC-CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVG-ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g-~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
..+||||||++..+..++.+|+..| |.|..+.++.+|++.+. ..+||+||+|+.||
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-----------------------~~~~dlvi~D~~l~ 70 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-----------------------DTRPGIVILDLGGG 70 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-----------------------TCCCSEEEEEEETT
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-----------------------ccCCCEEEEeCCCC
Confidence 4689999999999999999999999 99999999999998774 25799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+++|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 71 ~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 71 DLLGKPGIVEARALW-----ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGGGSTTHHHHHGGG-----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CchHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999863 369999999999999999999999999999999999999999988765
No 81
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=7e-17 Score=161.49 Aligned_cols=123 Identities=26% Similarity=0.386 Sum_probs=111.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCE--EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGAT--VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
..+.+||||||++..+..++.+|+..|+. +..+.++.+|++.+... +||+||+|+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~ 69 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH-----------------------LPDVALLDY 69 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEET
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 34679999999999999999999999954 56899999999999752 699999999
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
.||+++|++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 70 ~l~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 70 RMPGMDGAQVAAAVRSYE-----LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp TCSSSCHHHHHHHHHHTT-----CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCCCCCHHHHHHHHHhcC-----CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999752 46899999999999999999999999999999999999999999997764
No 82
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.5e-17 Score=158.44 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCCCceEEeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCcc
Q 001298 498 DLQKELEELVDMFSVQCSNHNVETVLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAE 577 (1105)
Q Consensus 498 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~ 577 (1105)
+|.+.+++++..+ ..+++++.++++...+.....++..|.+++.||+.||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5667777777665 56777777776554443334468899999999999999999988887765321
Q ss_pred CCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHH
Q 001298 578 FPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRT 657 (1105)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~ 657 (1105)
.. +.++|.|+|+||+++. +||||++||+
T Consensus 68 ------------------------------~~-~~i~v~D~G~gi~~~~---------------------~GlGL~~~~~ 95 (124)
T 3zxq_A 68 ------------------------------DD-VRVEVVDDGVGISGDI---------------------TESGLRNLRQ 95 (124)
T ss_dssp ------------------------------EE-EEEEEEECCCSSCGGG---------------------SHHHHHHHHH
T ss_pred ------------------------------CC-EEEEEEECCCCCCccc---------------------cccCHHHHHH
Confidence 22 7799999999999876 3999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecC
Q 001298 658 LVNKMGGEIKVVKKNSPGTLMQLYLLLG 685 (1105)
Q Consensus 658 LVe~~gG~I~v~S~~g~GT~f~~~lpl~ 685 (1105)
+++.|||++.+++.+++||+|++.||+.
T Consensus 96 ~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 96 RADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp HHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred HHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 9999999999999999999999999974
No 83
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.72 E-value=4e-17 Score=161.95 Aligned_cols=124 Identities=23% Similarity=0.401 Sum_probs=112.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+++||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-----------------------~~dlii~d~~l~ 63 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT-----------------------HPHLIITEANMP 63 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC-----------------------CCCEEEEcCCCC
Confidence 357999999999999999999999999999999999999998752 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 64 ~~~g~~~~~~l~~~~~---~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 64 KISGMDLFNSLKKNPQ---TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp SSCHHHHHHHHHTSTT---TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCcc---cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999997322 356999999999999999999999999999999999999999999886543
No 84
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.72 E-value=7.3e-17 Score=156.84 Aligned_cols=122 Identities=21% Similarity=0.371 Sum_probs=105.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..++.+|++.|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~~ 62 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST-----------------------FEPAIMTLDLSMPK 62 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------TCCSEEEEESCBTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEecCCCC
Confidence 4699999999999999999999999999999999999999864 37999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
++|++++++||+... ...+|||++|+.... ...+++++|+++||.||++.++|..+|.+......
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 63 LDGLDVIRSLRQNKV---ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp BCHHHHHHHHHTTTC---SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcCc---cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 999999999997532 134667777766655 78899999999999999999999999999887653
No 85
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.72 E-value=6.4e-17 Score=160.09 Aligned_cols=131 Identities=25% Similarity=0.405 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCC--CCccEEEEc
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDT--PRFDLILMD 1023 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DlIlmD 1023 (1105)
.+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+..... ..... ..||+||+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~---------------~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGS---------------YCNPDIAPRPAVILLD 69 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCS---------------SSCGGGCCCCSEEEEC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhccc---------------ccCcccCCCCcEEEEE
Confidence 357899999999999999999999998 89999999999999863100 00000 479999999
Q ss_pred CCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1024 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1024 i~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+.||+++|++++++||+... .+++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 70 ~~l~~~~g~~~~~~l~~~~~---~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 70 LNLPGTDGREVLQEIKQDEV---LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp SCCSSSCHHHHHHHHTTSTT---GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCcc---cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998532 24699999999999999999999999999999999999999999887643
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.72 E-value=3.7e-17 Score=178.60 Aligned_cols=121 Identities=26% Similarity=0.421 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
...+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-----------------------~~~DlvllD~~lp 92 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE-----------------------DHPDLILLDLGLP 92 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEECCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEcCCCC
Confidence 34799999999999999999999999999999999999999864 3799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
+|||++++++||+. +.+|||++|++.+.+...+|+++|+++||.||++.++|..+|..++++..
T Consensus 93 ~~~G~~l~~~lr~~------~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 93 DFDGGDVVQRLRKN------SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp HHHHHHHHHHHHTT------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHcC------CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999999999962 35899999999999999999999999999999999999999999987653
No 87
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.71 E-value=4.9e-17 Score=154.39 Aligned_cols=114 Identities=25% Similarity=0.430 Sum_probs=103.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+.. .+||+||+|+.||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~l~~~ 58 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-----------------------GNYDLVILDIEMPGI 58 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEECSCCSSS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEECCCCCC
Confidence 379999999999999999999999999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
+|++++++||+.. +++|||++|++.... .+++++|+++||.||++.++|..+|.+++
T Consensus 59 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 59 SGLEVAGEIRKKK-----KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CHHHHHHHHHHHC-----TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred CHHHHHHHHHccC-----CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9999999999753 458999999986554 67889999999999999999999998765
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=1.2e-16 Score=169.72 Aligned_cols=119 Identities=25% Similarity=0.407 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC-CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g-~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..+..+|+..| +.+ ..+.++.+|++.+... +||+||+|+.||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~-----------------------~~dlvllD~~lp 62 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL-----------------------DPDLILLDLNMP 62 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEETTST
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc-----------------------CCCEEEEeCCCC
Confidence 589999999999999999999874 887 7899999999988652 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|||++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 63 ~~~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 63 GMNGLETLDKLREKS-----LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp TSCHHHHHHHHHHSC-----CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999999752 4689999999999999999999999999999999999999999998764
No 89
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.71 E-value=4.5e-17 Score=171.87 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=109.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ..+||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------------------~~~~dlvl~D~~lp~ 60 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-----------------------PEQHGCLVLDMRMPG 60 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-----------------------TTSCEEEEEESCCSS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-----------------------ccCCCEEEEeCCCCC
Confidence 358999999999999999999999999999999999999874 247999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.+++++
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 61 MSGIELQEQLTAIS-----DGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999752 469999999999988899999999999999999999999999887754
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.71 E-value=1.3e-16 Score=159.50 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=108.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..+..+|+. |+.|..+.++.+|++.+.. ..+||+||+|+.||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK----------------------SDPFSVIMVDMRMPG 60 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH----------------------SCCCSEEEEESCCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc----------------------CCCCCEEEEeCCCCC
Confidence 36999999999999999999986 9999999999999999874 235799999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
++|++++++||+.. +.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+++++
T Consensus 61 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 61 MEGTEVIQKARLIS-----PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp SCHHHHHHHHHHHC-----SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcC-----CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999753 468999999999999999999999 999999999999999999888754
No 91
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.71 E-value=9.8e-17 Score=158.18 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=110.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..|++|..+.++.+|++.+.. ..||+||+|+ ||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~-~~~ 59 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-----------------------EKIDLVFVDV-FEG 59 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT-----------------------SCCSEEEEEC-TTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc-----------------------cCCCEEEEeC-CCC
Confidence 3689999999999999999999999999999999999999853 4799999999 999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++....
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 60 EESLNLIRRIREEF-----PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRV 125 (142)
T ss_dssp HHHHHHHHHHHHHC-----TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcccc
Confidence 99999999999752 4699999999999999999999999999999999999999999998766443
No 92
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.70 E-value=4.8e-17 Score=160.16 Aligned_cols=119 Identities=19% Similarity=0.333 Sum_probs=99.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+.. +.|..+.++.+|++.+... +||+||+|+.||++
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~D~~l~~~ 59 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH-----------------------HPDLVILDMDIIGE 59 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH-----------------------CCSEEEEETTC---
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC-----------------------CCCEEEEeCCCCCC
Confidence 68999999999999999999988 9999999999999999752 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 60 ~g~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 60 NSPNLCLKLKRSKG---LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ---CHHHHHHTSTT---CTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCcc---cCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 99999999998532 2569999999999998899999999999999999999999999988754
No 93
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.70 E-value=2.7e-16 Score=154.29 Aligned_cols=120 Identities=24% Similarity=0.327 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..++||||||++..+..++.+|+..|+.+. .+.++.+|++.+... +||+||+|+.|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-----------------------~~dlii~d~~~ 64 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL-----------------------RPDIALVDIML 64 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC-----------------------CCCEEEEecCC
Confidence 357999999999999999999999999999 599999999998752 69999999999
Q ss_pred C-CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 P-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
| +++|++++++||+. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 65 ~~~~~g~~~~~~l~~~------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 65 CGALDGVETAARLAAG------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp CSSSCHHHHHHHHHHH------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9 89999999999975 3589999999999999999999999999999999999999999988643
No 94
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.70 E-value=1.2e-16 Score=168.64 Aligned_cols=117 Identities=32% Similarity=0.477 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.+||||||++..+..+..+|+..||.|. .+.+|.+|++.+... +||+||+|+.||+
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~-----------------------~~dlvi~D~~~p~ 70 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-----------------------KPDLVIMDVKMPR 70 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESSCSS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc-----------------------CCCEEEEeCCCCC
Confidence 5899999999999999999999999998 899999999998652 6999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|||++++++||+.. ..|||++|++...+...+++++|+++||.||++.++|..+|.+++++
T Consensus 71 ~~g~~~~~~l~~~~------~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 71 RDGIDAASEIASKR------IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp SCHHHHHHHHHHTT------CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcC------CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999742 25999999999999999999999999999999999999999887653
No 95
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.70 E-value=1.3e-16 Score=189.51 Aligned_cols=119 Identities=31% Similarity=0.423 Sum_probs=109.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++.++..+..+|+..|+.|..+.||.+|++.+... +||+||+|++||+|
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~-----------------------~~dlvllD~~mp~~ 58 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-----------------------LPDIILLDVMMPGM 58 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-----------------------CCSEEEEESCCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-----------------------CCCEEEEcCCCCCC
Confidence 4899999999999999999999999999999999999998652 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||+|++++||+... .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|.++++
T Consensus 59 ~G~~~~~~l~~~~~---~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 59 DGFTVCRKLKDDPT---TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp CHHHHHHHHHHSTT---TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcc---cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999997532 256999999999999999999999999999999999999999988764
No 96
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.69 E-value=2.7e-16 Score=154.20 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=110.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP- 1027 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP- 1027 (1105)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+.||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~~~~ 59 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE-----------------------ENPEVVLLDMNFTS 59 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH-----------------------SCEEEEEEETTTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEEEeCCcCC
Confidence 3689999999999999999999999999999999999999875 3699999999999
Q ss_pred ----CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 ----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 ----~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
.++|++++++||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 60 ~~~~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 60 GINNGNEGLFWLHEIKRQY-----RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp -----CCHHHHHHHHHHHC-----TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCCCCccHHHHHHHHHhhC-----cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999752 46999999999999999999999999999999999999999999987654
No 97
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=1.4e-16 Score=170.01 Aligned_cols=119 Identities=29% Similarity=0.428 Sum_probs=110.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~~ 59 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-----------------------EPFDVVILDIMLPVH 59 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999998864 379999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|..++++.
T Consensus 60 ~g~~~~~~lr~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 60 DGWEILKSMRESG-----VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp CHHHHHHHHHHTT-----CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-----CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999752 4699999999999999999999999999999999999999999998654
No 98
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.69 E-value=2.5e-16 Score=157.88 Aligned_cols=119 Identities=21% Similarity=0.354 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlvi~d~~l~ 62 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG-----------------------TSVQLVISDMRMP 62 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT-----------------------SCCSEEEEESSCS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCCC
Confidence 45799999999999999999999999999999999999999853 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVG-MNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+++|++++++||+.. +.+|||++|+....+...+++++| +++||.||++.++|..+|.++++
T Consensus 63 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 63 EMGGEVFLEQVAKSY-----PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp SSCHHHHHHHHHHHC-----TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 999999999999752 469999999999999999999998 99999999999999999988764
No 99
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=6.7e-17 Score=159.20 Aligned_cols=123 Identities=24% Similarity=0.354 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
...+||||||++..+..+..+|+..|++|..+.++.+|++.+.. ..||+||+|+.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dlii~d~~l~ 62 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK-----------------------GFSGVVLLDIMMP 62 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-----------------------CCCEEEEEESCCS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh-----------------------cCCCEEEEeCCCC
Confidence 34799999999999999999999999999999999999999864 4699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 63 ~~~g~~~~~~l~~~~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 128 (142)
T 3cg4_A 63 GMDGWDTIRAILDNSL---EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV 128 (142)
T ss_dssp SSCHHHHHHHHHHTTC---CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc---cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999997322 25699999999988888889999999999999999999999999887543
No 100
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.69 E-value=4.7e-17 Score=189.77 Aligned_cols=117 Identities=26% Similarity=0.459 Sum_probs=105.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++.++..++.+|++.||+|..+.||.+|++.+.. .+||+||+|++||+|
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-----------------------~~~dlvllD~~mp~~ 62 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES-----------------------EQPDLVICDLRMPQI 62 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH-----------------------SCCSEEEECCCSSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh-----------------------CCCCEEEEcCCCCCC
Confidence 589999999999999999999999999999999999999864 379999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~ 1094 (1105)
||+|++++||+.. +++|||++|++.+.+...+|+++|+++||.||+ +.++|..+|.++++
T Consensus 63 ~G~~~~~~lr~~~-----~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~ 123 (394)
T 3eq2_A 63 DGLELIRRIRQTA-----SETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp CTHHHHHHHHHTT-----CCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC-----CCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHh
Confidence 9999999999752 469999999999999999999999999999999 68889888887764
No 101
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.69 E-value=1.2e-16 Score=157.57 Aligned_cols=122 Identities=38% Similarity=0.662 Sum_probs=104.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvllD~~lp~~ 67 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-----------------------RQFDVIIMDIQMPVM 67 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH-----------------------SCCSEEEECTTCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 589999999999999999999999999999999999999864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
||++++++||+.......+.+|||++|+........ ++|+++||.||++.++|..+|.+++++..
T Consensus 68 ~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 68 DGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 999999999975321122468999999876654433 78999999999999999999999986553
No 102
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.68 E-value=3.1e-16 Score=154.31 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=104.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+.. +.|..+.++.+|++.+.. ..||+||+|+.||+|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~-----------------------~~~dlvl~D~~lp~~ 57 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE-----------------------EWVQVIICDQRMPGR 57 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH-----------------------SCEEEEEEESCCSSS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc-----------------------CCCCEEEEeCCCCCC
Confidence 37999999999999999999875 999999999999998864 369999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc-CCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV-GMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
||++++++||+.. +++|||++|++...+...++++. |+++||.||++.++|..+|.++++.
T Consensus 58 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 58 TGVDFLTEVRERW-----PETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp CHHHHHHHHHHHC-----TTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-----CCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 9999999999752 45899999999988888888876 5999999999999999999887643
No 103
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.68 E-value=7.7e-17 Score=159.52 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=99.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHH--hcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 950 LRILLAEDTPLIQIVACKILE--KVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~--~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.+||||||++..+..+..+|+ ..|+.+. .+.++.+|++.+.. .+||+||+|+.|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~-----------------------~~~dlvllD~~l 59 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-----------------------HPPNVLLTDVRM 59 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-----------------------SCCSEEEEESCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc-----------------------CCCCEEEEeCCC
Confidence 489999999999999999997 3688877 99999999998853 479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|+|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.++++
T Consensus 60 p~~~g~~l~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 60 PRMDGIELVDNILKLY-----PDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhC-----CCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999742 46899999999988888999999999999999999999999988764
No 104
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.68 E-value=3.4e-16 Score=157.03 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=109.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-----------------------~~~dliild~~l~~ 59 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-----------------------DFAGIVISDIRMPG 59 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT-----------------------TCCSEEEEESCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 4689999999999999999999999999999999999988742 47999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
++|+++++.||+.. +++|||++|+....+...+++++|+++||.||++.++|..+|.+++++
T Consensus 60 ~~g~~~~~~l~~~~-----~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 60 MDGLALFRKILALD-----PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SCHHHHHHHHHHHC-----TTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC-----CCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999752 469999999999999999999999999999999999999999888754
No 105
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.68 E-value=3.9e-16 Score=156.25 Aligned_cols=121 Identities=26% Similarity=0.374 Sum_probs=111.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-cCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEK-VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~-~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..++.+|+. .|+.+. .+.++.+|++.+.. ..||+||+|+.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~-----------------------~~~dlii~D~~l 61 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE-----------------------TTPDIVVMDLTL 61 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT-----------------------TCCSEEEECSCC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEecCC
Confidence 46899999999999999999998 799988 89999999999864 369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|+++|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 62 ~~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 62 PGPGGIEATRHIRQWD-----GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHhC-----CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999863 45899999999999999999999999999999999999999999887653
No 106
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=2.4e-16 Score=183.50 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=108.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..++.+|+..||.|..+.+|.+|++.+.. ..||+||+|++||+|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~-----------------------~~~DlvllD~~mp~~ 57 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE-----------------------KHFNVVLLDLLLPDV 57 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESBCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCCC
Confidence 479999999999999999999999999999999999999864 379999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||++++++||+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|.++++
T Consensus 58 dG~ell~~lr~~~-----~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 58 NGLEILKWIKERS-----PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999999752 46999999999999999999999999999999999999999988764
No 107
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.68 E-value=4.1e-16 Score=149.68 Aligned_cols=120 Identities=25% Similarity=0.408 Sum_probs=109.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-C
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-K 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP-~ 1028 (1105)
.+||||||++..+..+..+|+..|++|..+.++.+|++.+... +||+||+|+.|| .
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-----------------------~~dlvi~d~~~~~~ 62 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD-----------------------RPDLVVLAVDLSAG 62 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH-----------------------CCSEEEEESBCGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc-----------------------CCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999999999998652 699999999999 9
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
++|++++++||+... .+++|||++ +....+...+++++|+++|+.||++.++|..+|.++++..
T Consensus 63 ~~g~~~~~~l~~~~~---~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 63 QNGYLICGKLKKDDD---LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp CBHHHHHHHHHHSTT---TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHhcCcc---ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 999999999998532 256999999 8888888899999999999999999999999999988653
No 108
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.67 E-value=5.1e-16 Score=153.02 Aligned_cols=127 Identities=24% Similarity=0.335 Sum_probs=110.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCC--EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGA--TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..+..+|+..|+ .|..+.++.+|++.++... ......||+||+|+.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~-----------------~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN-----------------KENKIHPKLILLDINI 69 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT-----------------TCCCCCCSEEEEETTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc-----------------cccCCCCCEEEEecCC
Confidence 46899999999999999999999998 9999999999999986310 0002479999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|.++|++++++||+... .+++|||++|+....+...+++++|+++||.||++.++|..++......
T Consensus 70 ~~~~g~~~~~~l~~~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 70 PKMNGIEFLKELRDDSS---FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp TTSCHHHHHHHHTTSGG---GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcCcc---ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999998532 2469999999999999999999999999999999999999998766543
No 109
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.67 E-value=1.8e-16 Score=170.26 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=110.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.++||||||++..+..+..+|+..|+.|..+.++.+|++.+.. .+||+||+|+.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-----------------------~~~dlvllD~~l~~ 63 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-----------------------NRPDAIVLDINMPV 63 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-----------------------SCCSEEEEESSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-----------------------CCCCEEEEeCCCCC
Confidence 3689999999999999999999999999999999999998864 37999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+|++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 64 ~~g~~~~~~l~~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 64 LDGVSVVTALRAMD-----NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp SCHHHHHHHHHHTT-----CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC-----CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999752 4699999999999888899999999999999999999999999988653
No 110
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.67 E-value=1e-15 Score=149.98 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=107.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+|| |
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----~ 68 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----V 68 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH-----------------------SCCSEEE----E
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc-----------------------CCCCEEE----E
Confidence 456899999999999999999999999999999999999999864 3799999 9
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1096 (1105)
|.++|++++++||+. + .++|||++|+....+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 69 ~~~~g~~~~~~l~~~-~----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 69 SDKNALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp CSTTHHHHHHHHHHH-S----TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cCccHHHHHHHHHhc-C----CCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999975 2 158999999999999999999999999999999 9999999999988654
No 111
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.67 E-value=4e-16 Score=168.71 Aligned_cols=118 Identities=29% Similarity=0.470 Sum_probs=110.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+... .||+||+|+.||+|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-----------------------~~dlvilD~~l~~~ 62 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL-----------------------RPDLVLLDLMLPGM 62 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH-----------------------CCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-----------------------CCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+. .++|||++|+....+...+++++|+++||.||++.++|..+|..++++.
T Consensus 63 ~g~~~~~~lr~~------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 63 NGIDVCRVLRAD------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CHHHHHHHHHTT------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHhC------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999974 2589999999999999999999999999999999999999999998765
No 112
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.66 E-value=2e-16 Score=153.94 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=107.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. .. ||+||+|+.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------------------~~-~dlvi~D~~l~~ 58 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-----------------------NK-QDIIILDLMMPD 58 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-----------------------CT-TEEEEEECCTTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-----------------------cC-CCEEEEeCCCCC
Confidence 368999999999999999999999999999999999988663 24 999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCH-----HHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPS 1098 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~ 1098 (1105)
++|++++++||+.. +.+|||++|++... +...+++++|+++||.||++.++|..+|.++......
T Consensus 59 ~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 59 MDGIEVIRHLAEHK-----SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp THHHHHHHHHHHTT-----CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHhCC-----CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999753 46899999999875 6677899999999999999999999999999876653
No 113
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.66 E-value=3.9e-16 Score=167.31 Aligned_cols=118 Identities=25% Similarity=0.458 Sum_probs=110.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||+|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-----------------------~~dlvllD~~l~~~ 61 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA-----------------------GADIVLLDLMLPGM 61 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH-----------------------CCSEEEEESSCSSS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc-----------------------CCCEEEEECCCCCC
Confidence 5899999999999999999999999999999999999988652 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 62 ~g~~~~~~l~~~------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 62 SGTDVCKQLRAR------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CHHHHHHHHHHH------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHcC------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999973 2589999999998888999999999999999999999999999998764
No 114
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.66 E-value=2.1e-16 Score=156.78 Aligned_cols=111 Identities=20% Similarity=0.382 Sum_probs=93.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-CCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKV-GATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.+.+||||||++..+..++.+|++. |+.+. .+.++.+|++.+.. ...||+||+|+.
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------~~~~dlvilD~~ 69 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA----------------------QPNVDLILLDIE 69 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------------------CTTCCEEEECTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc----------------------CCCCCEEEEeCC
Confidence 4568999999999999999999998 88865 89999999999864 126999999999
Q ss_pred CCCCCHHHHHHHHHccccccCCCCcceEEEec--cCCHHHHHHHHhcCCCEEEEcCCCHHHHH
Q 001298 1026 MPKMDGYEATIEIRKSESEHGARNIPIVALTA--HAMNADEKKCLGVGMNAYLTKPIDSERMV 1086 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa--~~~~~~~~~~l~aG~d~yL~KPi~~~~L~ 1086 (1105)
||+|+|++++++||+.. .+|||++|+ ....+...+|+++|+++||.||++.++|.
T Consensus 70 l~~~~g~~~~~~lr~~~------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~ 126 (145)
T 3kyj_B 70 MPVMDGMEFLRHAKLKT------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHD 126 (145)
T ss_dssp SCCCTTCHHHHHHHHHC------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC---
T ss_pred CCCCCHHHHHHHHHhcC------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 99999999999999752 278999987 55666778999999999999999954433
No 115
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.65 E-value=1.6e-15 Score=147.07 Aligned_cols=123 Identities=24% Similarity=0.376 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. ...||+||+|+.||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l~ 61 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS----------------------GAAIDGVVTDIRFC 61 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT----------------------TCCCCEEEEESCCS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc----------------------CCCCCEEEEeeeCC
Confidence 35799999999999999999999999999999999999999863 12699999999999
Q ss_pred C-CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCC
Q 001298 1028 K-MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSE 1099 (1105)
Q Consensus 1028 ~-mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~ 1099 (1105)
. ++|++++++||+.. +++|||++|+....+...+++++| +||.||++.++|..+|+++++.....
T Consensus 62 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 62 QPPDGWQVARVAREID-----PNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp SSSCHHHHHHHHHHHC-----TTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 7 99999999999752 469999999999888888887776 89999999999999999999876543
No 116
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.65 E-value=8.1e-16 Score=145.18 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=105.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... +||+||+|+.||.+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~-----------------------~~dlii~d~~~~~~ 58 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL-----------------------QPIVILMAWPPPDQ 58 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-----------------------CCSEEEEECSTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc-----------------------CCCEEEEecCCCCC
Confidence 5899999999999999999999999999999999999998752 69999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+|++++++||+... .+++|||++|+..... +++++|+++|+.||++.++|..+|.+++++
T Consensus 59 ~~~~~~~~l~~~~~---~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 59 SCLLLLQHLREHQA---DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp THHHHHHHHHHTCC---CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhccc---cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 99999999997532 2569999999987765 899999999999999999999999877653
No 117
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.65 E-value=1.7e-15 Score=149.51 Aligned_cols=117 Identities=22% Similarity=0.368 Sum_probs=102.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..+..+|+.. |+. +..+.++.+|++.+.. ..||+||+|+.|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~-----------------------~~~dlvi~d~~l 65 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-----------------------NKVDAIFLDINI 65 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH-----------------------CCCSEEEECSSC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-----------------------CCCCEEEEecCC
Confidence 479999999999999999999986 888 4589999999999864 369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+++|++++++||+.. +.+|||++|+.. +...+++++|+++||.||++.++|..+|.++++.
T Consensus 66 ~~~~g~~~~~~l~~~~-----~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 66 PSLDGVLLAQNISQFA-----HKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp SSSCHHHHHHHHTTST-----TCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHccC-----CCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999742 357899999874 3677899999999999999999999999988743
No 118
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.65 E-value=4.9e-16 Score=178.25 Aligned_cols=118 Identities=27% Similarity=0.410 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHH-hcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILE-KVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~-~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.+||||||++..+..++.+|+ ..|+.|..+.||.+|++.+... .||+||+|+.||+
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~-----------------------~~dlvl~D~~mp~ 75 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI-----------------------KPTVILQDLVMPG 75 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH-----------------------CCSEEEEESBCSS
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC-----------------------CCCEEEEeCCCCC
Confidence 479999999999999999996 4699999999999999998652 6999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
|||++++++||+... .+++|||++|++...+...+|+++|+++||.||++.++|..+|..+.
T Consensus 76 ~~G~~~~~~l~~~~~---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 76 VDGLTLLAAYRGNPA---TRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp SBHHHHHHHHTTSTT---TTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcc---cCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 999999999997532 25699999999999999999999999999999999999999987653
No 119
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.64 E-value=2.4e-15 Score=153.01 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=104.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcC-CE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVG-AT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g-~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
.++||||||++..+..++.+|+..| +. +..+.++.+|++.+... .||+||+|+.|
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-----------------------~~dlvilD~~l 81 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----------------------KPDVITMDIEM 81 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSSC
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC-----------------------CCCEEEEeCCC
Confidence 4689999999999999999999875 33 45799999999998753 69999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHH--HHHHHHhcCCCEEEEcCCC---------HHHHHHHHHHHhhc
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPID---------SERMVSTILRLTKN 1095 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~---------~~~L~~~I~~l~~~ 1095 (1105)
|+++|++++++||+.. + +|||++|+..... ...+++++|+++||.||++ .++|.++|++++.+
T Consensus 82 ~~~~g~~l~~~lr~~~-----~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 82 PNLNGIEALKLIMKKA-----P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp SSSCHHHHHHHHHHHS-----C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcC-----C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 9999999999999752 3 7999999977654 5679999999999999999 78899999888876
Q ss_pred CC
Q 001298 1096 MP 1097 (1105)
Q Consensus 1096 ~~ 1097 (1105)
..
T Consensus 156 ~~ 157 (164)
T 3t8y_A 156 DP 157 (164)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 120
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.63 E-value=8e-16 Score=153.94 Aligned_cols=121 Identities=17% Similarity=0.307 Sum_probs=99.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..+..+|+.. |+ .|..+.++.+|++.+.. ...||+||+|+.||
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~----------------------~~~~dlvi~d~~l~ 61 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA----------------------DNTVDLILLDVNLP 61 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT----------------------TCCCSEEEECC---
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc----------------------cCCCCEEEEeCCCC
Confidence 68999999999999999999988 88 78899999999999863 14799999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
.++|++++++||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|.+++++..
T Consensus 62 ~~~g~~~~~~l~~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 62 DAEAIDGLVRLKRFD-----PSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp ---CHHHHHHHHHHC-----TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 999999999999752 46899999999988899999999999999999999999999999987654
No 121
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.63 E-value=1.7e-16 Score=170.14 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=104.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-cCCEEEE-ECCHHHHHHH-HHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 949 GLRILLAEDTPLIQIVACKILEK-VGATVSV-VPDGLQAVEA-LNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~-~g~~v~~-a~ng~eAl~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.++||||||++..+..++.+|+. .|+.+.. +.++.+++.. +.. .+||+||+|++
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------~~~dlvllD~~ 63 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES-----------------------RSIQMLVIDYS 63 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG-----------------------GGCCEEEEEGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc-----------------------cCCCEEEEeCC
Confidence 36899999999999999999995 6888855 4677776653 332 36999999999
Q ss_pred CCCCCHHHHHHHHHc-cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1026 MPKMDGYEATIEIRK-SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1026 MP~mdG~e~~~~IR~-~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
||+|||++++++||+ .. +++|||++|++.+.+....++++|+++||.||++.++|..+|.+++++..
T Consensus 64 mp~~~G~~~~~~lr~~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 64 RISDDVLTDYSSFKHISC-----PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp GCCHHHHHHHHHHHHHHC-----TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhhC-----CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 999999999999997 32 46999999999998899999999999999999999999999999987653
No 122
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.63 E-value=5.4e-16 Score=185.36 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=95.1
Q ss_pred EEeC-HHHHHHHHHHHHhhHhcccCCCc----EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCC
Q 001298 533 VRGD-PGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDN 607 (1105)
Q Consensus 533 v~gD-~~rL~QIL~NLL~NAIKfT~~G~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1105)
+.+| +.+|.|||.|||+||++|+..|+ |.|.+... ..+
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~ 66 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDA 66 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE-------------------------------------ETT
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC-------------------------------------CCc
Confidence 4455 59999999999999999998764 66554211 001
Q ss_pred ceEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEec
Q 001298 608 KLALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLL 684 (1105)
Q Consensus 608 ~~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~-~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~GT-~f~~~lpl 684 (1105)
...+.|+|.|||+||+++.++++|++|++.+.... +..+|+||||++|+.++++|||+ |.++|..+.|+ +|+|.||+
T Consensus 67 ~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl 146 (530)
T 2zbk_B 67 RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 146 (530)
T ss_dssp TTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEe
Confidence 23478999999999999999999999988776433 45689999999999999999999 99999999887 88888887
Q ss_pred CC
Q 001298 685 GA 686 (1105)
Q Consensus 685 ~~ 686 (1105)
..
T Consensus 147 ~~ 148 (530)
T 2zbk_B 147 DI 148 (530)
T ss_dssp ET
T ss_pred cc
Confidence 53
No 123
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.1e-16 Score=169.67 Aligned_cols=119 Identities=14% Similarity=0.242 Sum_probs=108.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcC-CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVG-ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g-~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+... +||+||+|+.||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~-----------------------~~dlvllD~~lp 58 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA-----------------------RPDVAVLDVRLP 58 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEECSEET
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc-----------------------CCCEEEEeCCCC
Confidence 489999999999999999999887 884 5799999999998652 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|||++++++||+.. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 59 ~~~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 59 DGNGIELCRDLLSRM-----PDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp TEEHHHHHHHHHHHC-----TTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHhC-----CCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999752 4699999999999999999999999999999999999999999887653
No 124
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.63 E-value=1.2e-15 Score=162.54 Aligned_cols=116 Identities=21% Similarity=0.372 Sum_probs=107.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------------------~~~dlvllD~~lp~~ 56 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------------------EAFHVVVLDVMLPDY 56 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------------------SCCSEEEEESBCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------------------CCCCEEEEeCCCCCC
Confidence 489999999999999999999999 999999999998855 269999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
||++++++||+.. +++|||++|++...+...+++++|+++||.||++.++|..+|.+++++.
T Consensus 57 ~g~~~~~~lr~~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 57 SGYEICRMIKETR-----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp BHHHHHHHHHHHC-----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcC-----CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999753 4689999999999999999999999999999999999999999998764
No 125
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.63 E-value=8e-16 Score=181.98 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=95.7
Q ss_pred EEeCHHHHHHHHHHHHhhHhcccCCCc----EEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCc
Q 001298 533 VRGDPGRVFQIFSNLINNSIKFTSSGH----IIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 608 (1105)
Q Consensus 533 v~gD~~rL~QIL~NLL~NAIKfT~~G~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1105)
+.+|+.+|.|||.|||+||++|+..|+ |.|.+... ..+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~-------------------------------------~~~~ 68 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLI-------------------------------------DDAR 68 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE-------------------------------------ETTT
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC-------------------------------------CCcC
Confidence 456889999999999999999998764 66554211 0012
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCCCC-CCCCCccchHHHHHHHHHHcCCE-EEEEEeCCCce-EEEEEEecC
Q 001298 609 LALCFEVDDTGCGIDQSKWETVFESFEQGDPSTT-RKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSPGT-LMQLYLLLG 685 (1105)
Q Consensus 609 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~-~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~GT-~f~~~lpl~ 685 (1105)
..+.|+|.|+|+||+++.++++|++||+.+.... +..+|+||||++|+.++++|||+ |.++|..+.|+ +|+|.||+.
T Consensus 69 ~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 69 QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 3478999999999999999999999988766433 45689999999999999999999 99999999987 888888876
Q ss_pred C
Q 001298 686 A 686 (1105)
Q Consensus 686 ~ 686 (1105)
.
T Consensus 149 ~ 149 (471)
T 1mu5_A 149 I 149 (471)
T ss_dssp T
T ss_pred c
Confidence 4
No 126
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.63 E-value=7.4e-16 Score=151.21 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=102.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+... ..||+||+|+.|
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~----------------------~~~dlvilD~~l 70 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL----------------------STCDLLIVSDQL 70 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG----------------------GSCSEEEEETTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC----------------------CCCCEEEEeCCC
Confidence 4567999999999999999999999999999999999999987530 369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEe-ccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALT-AHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalT-a~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
|+++|++++++||+. .+++|||++| +....+. .+++ +++||.||++.++|..+|.+++++.
T Consensus 71 ~~~~g~~~~~~l~~~-----~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 71 VDLSIFSLLDIVKEQ-----TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp TTSCHHHHHHHHTTS-----SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCCHHHHHHHHHhh-----CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 999999999999973 2469999999 8877666 6666 9999999999999999999987654
No 127
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=7.6e-16 Score=180.12 Aligned_cols=121 Identities=26% Similarity=0.375 Sum_probs=107.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
++||||||++.++..++.+|++ .|+.|..|.||.+|++.+... ..||+||+|++||+
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~----------------------~~~DlvllDi~mP~ 61 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC----------------------GHVDIAICDLQMSG 61 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH----------------------SCEEEEEECSSCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC----------------------CCCCEEEEeCCCCC
Confidence 5899999999999999999998 578999999999999998641 36999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCH-----HHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCC
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMN-----ADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMP 1097 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~ 1097 (1105)
|||+|++++||+.. +.+|||++|+.... ....+|+++|+++||.||++.++|..+|.++++...
T Consensus 62 ~dG~ell~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 62 MDGLAFLRHASLSG-----KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp SCHHHHHHHHHHHT-----CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcC-----CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999753 34788888887766 667789999999999999999999999999886543
No 128
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.60 E-value=1.2e-15 Score=159.65 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=103.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 001298 947 LEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM 1026 (1105)
Q Consensus 947 ~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M 1026 (1105)
+.+.+||||||++..+..+..+|+..||.|..+.++.+|++ ..||+||+|+.|
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~---------------------------~~~dlvl~D~~m 62 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD---------------------------VPVDVVFTSIFQ 62 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS---------------------------SCCSEEEEECCS
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCC---------------------------CCCCEEEEeCCC
Confidence 45679999999999999999999999999999998887651 369999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1027 PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1027 P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
|+|||+ +++.+|+.. +++|||++|++.+.+...+|+++|+++||.||++.++|..+|..+++
T Consensus 63 p~~~g~-l~~~~~~~~-----~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 63 NRHHDE-IAALLAAGT-----PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp STHHHH-HHHHHHHSC-----TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CccchH-HHHHHhccC-----CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 999999 999888642 46999999999999999999999999999999999999999987764
No 129
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.59 E-value=2.9e-15 Score=149.33 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=82.1
Q ss_pred eCHHHHHHHHHHHHhhHhcccCC----CcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceE
Q 001298 535 GDPGRVFQIFSNLINNSIKFTSS----GHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLA 610 (1105)
Q Consensus 535 gD~~rL~QIL~NLL~NAIKfT~~----G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1105)
.|...+.+++.||+.||+||+.. |.|.|.+... ...
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~----------------------------------------~~~ 74 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE----------------------------------------DGV 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE----------------------------------------TTE
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe----------------------------------------CCE
Confidence 58889999999999999999965 6677654321 124
Q ss_pred EEEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCCC
Q 001298 611 LCFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGAS 687 (1105)
Q Consensus 611 l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~ 687 (1105)
+.|+|.|+|+||+ .++++|++|++.+. ...|+||||+||+++++ ++.++|.+++||+|++.||+..+
T Consensus 75 ~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 75 VHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp EEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred EEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 7899999999999 89999999997653 33589999999999998 99999999999999999998643
No 130
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.59 E-value=6.9e-15 Score=156.97 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=106.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. .+||+|| ||+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-----------------------~~~dlvi----lp~~ 53 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI-----------------------RNYDLVM----VSDK 53 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT-----------------------SCCSEEE----ECCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc-----------------------CCCCEEE----eCCC
Confidence 379999999999999999999999999999999999998853 4799999 9999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l~~~~ 1096 (1105)
||++++++||+. + .++|||++|++.+.+...+++++|+++||.||+ +.++|..+|.+++++.
T Consensus 54 ~g~~~~~~lr~~-~----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 54 NALSFVSRIKEK-H----SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp THHHHHHHHHHH-C----TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHhC-C----CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999975 2 258999999999999999999999999999999 9999999999998775
No 131
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.59 E-value=8.9e-17 Score=153.88 Aligned_cols=119 Identities=25% Similarity=0.382 Sum_probs=108.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
.+|||+||++..+..+..+|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-----------------------~~~dlvi~d~~~~~~ 60 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-----------------------KTPDVLLSDIRMPGM 60 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS-----------------------CCCSCEEECSCSSHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-----------------------CCCCEEEEeeecCCC
Confidence 479999999999999999999999999999999999998742 479999999999999
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+|++++++||+.. +++|||++|++...+...+++++|+++|+.||++.++|..+|.+++++.
T Consensus 61 ~g~~~~~~l~~~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 61 DGLALLKQIKQRH-----PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp HHCSTHHHHHHHC-----TTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999742 4689999999988888889999999999999999999999999988654
No 132
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.58 E-value=2.7e-13 Score=160.98 Aligned_cols=267 Identities=15% Similarity=0.178 Sum_probs=181.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~----------------------------------~~~dl 48 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR----------------------------------DLPDI 48 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777888888888899998888777666655544433321 12468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcccccc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGKILGM 861 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~~~~~ 861 (1105)
+++|+.++++++..+...++... ......+++..............+.|...++.||+....+...+..+........
T Consensus 49 vllD~~mp~~~G~~~~~~l~~~~--~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 126 (459)
T 1w25_A 49 ILLDVMMPGMDGFTVCRKLKDDP--TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVID 126 (459)
T ss_dssp EEEESCCSSSCHHHHHHHHHHST--TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHhcCc--ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhh
Confidence 89999999998855444443211 1112233344444444455566778999999999999999988877654221000
Q ss_pred cccccccCCCCCCcccccccccccccchhcccccccccccCCCCCCCcchhhhhhhhhhhccccCCCCCCCCCCCCCCCc
Q 001298 862 QNRISSTTNEGNGEEIRGSIANYSASKHQKFRKCSFEFSSICPGESSSRREDLIHTMFRERHQIGSSRRDQPCSSSNSSS 941 (1105)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1105)
... . ..... ........ .
T Consensus 127 ~~~-----------------------------~---------------------------~~~~~--~~~~~~~~----~ 144 (459)
T 1w25_A 127 ELR-----------------------------Q---------------------------REASG--RRMGVIAG----A 144 (459)
T ss_dssp HHH-----------------------------H---------------------------HHTTT--TSSTTTTC----C
T ss_pred Hhh-----------------------------h---------------------------hcccc--cchhhhhh----h
Confidence 000 0 00000 00000000 0
Q ss_pred cccccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 942 NQKRILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 942 ~~~~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
.......+.+||+|||+..++..+...|.. .+.+....++.+++.. .. ..||+|+
T Consensus 145 ~~~~~~~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~-----------------------~~~dlil 199 (459)
T 1w25_A 145 AARLDGLGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AG-----------------------GPVDLVI 199 (459)
T ss_dssp CCCCSSCSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HH-----------------------SSCSEEE
T ss_pred hhhhcCCCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-cc-----------------------CCCCEEE
Confidence 000112345899999999999888888875 4678888899888632 21 3699999
Q ss_pred EcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1022 MDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1022 mDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
||++||.|||+++++.||+... ..++||+++|++.......+|+++||++|+.||++.+++...+..+++
T Consensus 200 ~D~~mp~~dG~~~~~~ir~~~~---~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 200 VNAAAKNFDGLRFTAALRSEER---TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp EETTCSSSCHHHHHHHHHTSGG---GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHhCcc---ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998643 257999999999999999999999999999999999999888876653
No 133
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.57 E-value=3.3e-15 Score=164.24 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=86.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEK-VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK 1028 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~ 1028 (1105)
.+||||||++..+..+...|+. .|+.+. +.++.+++..+. ..+||+||+|++||+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-----------------------~~~~dlvllD~~mP~ 60 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-----------------------GDEYVVALVDLTLPD 60 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-----------------------TTTEEEEEEESCBTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-----------------------cCCCcEEEEeCCCCC
Confidence 4899999999999999999976 477775 556666655432 247999999999999
Q ss_pred CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCH
Q 001298 1029 MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS 1082 (1105)
Q Consensus 1029 mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~ 1082 (1105)
|||+|++++||+. .+|||++|++.+.+++.+|+++||++||.||+..
T Consensus 61 ~~G~~~~~~lr~~-------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 61 APSGEAVKVLLER-------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp BTTSHHHHHHHHT-------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCHHHHHHHHHhC-------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999962 3899999999999999999999999999999754
No 134
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.54 E-value=4.4e-14 Score=161.91 Aligned_cols=118 Identities=21% Similarity=0.422 Sum_probs=103.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhc-CCE-EEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKV-GAT-VSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP 1027 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP 1027 (1105)
++||||||++..+..++.+|+.. |++ +..+.|+.+|++.+... .||+|++|++||
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~-----------------------~pDlVllDi~mp 60 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF-----------------------NPDVLTLDVEMP 60 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-----------------------CCSEEEEECCCS
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc-----------------------CCCEEEEECCCC
Confidence 58999999999999999999986 898 56999999999998752 699999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCH--HHHHHHHhcCCCEEEEcCCCH---------HHHHHHHHHHhhcC
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMN--ADEKKCLGVGMNAYLTKPIDS---------ERMVSTILRLTKNM 1096 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~--~~~~~~l~aG~d~yL~KPi~~---------~~L~~~I~~l~~~~ 1096 (1105)
.|||++++++||+.. + +|||++|+.... +...+++++|+++||.||++. ++|..+|+.+.+..
T Consensus 61 ~~dGlell~~l~~~~-----p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 61 RMDGLDFLEKLMRLR-----P-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp SSCHHHHHHHHHHSS-----C-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHhcC-----C-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999742 3 899999998875 447899999999999999994 88999998876543
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.52 E-value=1.2e-14 Score=182.66 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=108.3
Q ss_pred CEEEEEeCCH-HH-------HHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 950 LRILLAEDTP-LI-------QIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 950 ~~ILIvdD~~-~~-------~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
++||||||++ .. ++.++..|++.||+|..|.||++|++.+.. ...||+||
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~----------------------~~~~d~vi 58 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS----------------------NEAIDCLM 58 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT----------------------TCCCSEEE
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc----------------------CCCCcEEE
Confidence 3799999999 88 999999999999999999999999999853 23599999
Q ss_pred EcCCCCC----CCHHHHHHHHHccccccCCCCcceEEEeccCC-HHHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHHhhc
Q 001298 1022 MDCQMPK----MDGYEATIEIRKSESEHGARNIPIVALTAHAM-NADEKKCLGVGMNAYLTKPIDSER-MVSTILRLTKN 1095 (1105)
Q Consensus 1022 mDi~MP~----mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~-~~~~~~~l~aG~d~yL~KPi~~~~-L~~~I~~l~~~ 1095 (1105)
+|++||+ |||++++++||+.. ..+|||++|+... .+++...+..|+|||+.||++.++ |..+|.+++++
T Consensus 59 lDi~lp~~~~~~~G~~ll~~iR~~~-----~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 59 FSYQMEHPDEHQNVRQLIGKLHERQ-----QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp EECCCCSHHHHHHHHHHHHHHHHHS-----TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred EeCCCCcccccccHHHHHHHHHHhC-----CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999 99999999999852 3599999999988 889999999999999999999999 88999888866
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.35 E-value=1.2e-12 Score=158.53 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=86.2
Q ss_pred EEeCHHHHHHHHHHHHhhHhcccCC-C---cEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCc
Q 001298 533 VRGDPGRVFQIFSNLINNSIKFTSS-G---HIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNK 608 (1105)
Q Consensus 533 v~gD~~rL~QIL~NLL~NAIKfT~~-G---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (1105)
+.+|+.+|.|+|.|||+||++|+.. | .|.|.+.. ++.
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~---------------------------------------~~~ 71 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVER---------------------------------------TGP 71 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEE---------------------------------------ETT
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEE---------------------------------------CCC
Confidence 5689999999999999999999984 4 45554311 111
Q ss_pred eEEEEEEEeCCCCCChhhHhhhhcccccCCCC--CCCCCCCccchHHHHHHHHHHcCCE-EEEEEeCCC---ceEEEEEE
Q 001298 609 LALCFEVDDTGCGIDQSKWETVFESFEQGDPS--TTRKHGGTGLGLSIVRTLVNKMGGE-IKVVKKNSP---GTLMQLYL 682 (1105)
Q Consensus 609 ~~l~~~V~DtG~GI~~e~l~~IFe~F~q~~~s--~~~~~~GtGLGLaIvk~LVe~~gG~-I~v~S~~g~---GT~f~~~l 682 (1105)
..+.|+|.|+|+|||++.++++|++|+.++.. .....+|+||||++|+.+++.|||+ |.++|..+. |++|+|.+
T Consensus 72 ~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~l 151 (621)
T 2q2e_B 72 DYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMI 151 (621)
T ss_dssp TEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCC
T ss_pred cEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEec
Confidence 24679999999999999999999887544321 1123479999999999999999999 899998764 55555555
Q ss_pred ecC
Q 001298 683 LLG 685 (1105)
Q Consensus 683 pl~ 685 (1105)
|..
T Consensus 152 p~~ 154 (621)
T 2q2e_B 152 NTS 154 (621)
T ss_dssp CSS
T ss_pred chh
Confidence 543
No 137
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.93 E-value=5.6e-10 Score=119.38 Aligned_cols=94 Identities=23% Similarity=0.406 Sum_probs=77.9
Q ss_pred CEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceE
Q 001298 974 ATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIV 1053 (1105)
Q Consensus 974 ~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipII 1053 (1105)
+.|..+.|+.+|++.+... .||+||+|++||.|||++++++||+..+ ..+|+
T Consensus 6 ~~v~~~~~~~~a~~~~~~~-----------------------~~dlvl~D~~~p~~~g~~~~~~l~~~~~-----~~~i~ 57 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL-----------------------KPDIVTMDITMPEMNGIDAIKEIMKIDP-----NAKII 57 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH-----------------------CCSCEEEECCSTTSSHHHHHHHHHHHSS-----SCCEE
T ss_pred EEEEECCCHHHHHHHHHhc-----------------------CCCEEEEeCCCCCCCHHHHHHHHHHhCC-----CCCEE
Confidence 4555689999999998752 6999999999999999999999997543 24555
Q ss_pred EEeccCCHHHHHHHHhcCCCEEEEcC--CCHHHHHHHHHHHhhc
Q 001298 1054 ALTAHAMNADEKKCLGVGMNAYLTKP--IDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1054 alTa~~~~~~~~~~l~aG~d~yL~KP--i~~~~L~~~I~~l~~~ 1095 (1105)
++++....+...+++++|+++|+.|| ++..++...+.+.+..
T Consensus 58 vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 58 VCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp EECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred EEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 66666668889999999999999999 8888999888877643
No 138
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.36 E-value=2.3e-07 Score=107.22 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=65.4
Q ss_pred EeCHHHHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEE
Q 001298 534 RGDPGRVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCF 613 (1105)
Q Consensus 534 ~gD~~rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 613 (1105)
.++...+.+++.|+|+||+++ ..+.|.|.+.. ++ .|
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~---------------------------------------~~----~i 66 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE---------------------------------------DG----SL 66 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT---------------------------------------TS----CE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc---------------------------------------CC----EE
Confidence 578999999999999999995 34566665311 11 48
Q ss_pred EEEeCCCCCChhhHhh--------hhcccccCCCC----CCCCCCCccchHHHHHHHHHHcC
Q 001298 614 EVDDTGCGIDQSKWET--------VFESFEQGDPS----TTRKHGGTGLGLSIVRTLVNKMG 663 (1105)
Q Consensus 614 ~V~DtG~GI~~e~l~~--------IFe~F~q~~~s----~~~~~~GtGLGLaIvk~LVe~~g 663 (1105)
+|.|+|+|||++.+++ +|.+|+.+..- .....|+.|+||++|+.+++.+.
T Consensus 67 ~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 67 TVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp EEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred EEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 9999999999999877 99988876421 11134679999999999998654
No 139
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=98.33 E-value=2.1e-06 Score=90.70 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=61.8
Q ss_pred Ccceeeeee-ecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCC
Q 001298 201 GVASWHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 201 ~~~~w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
|++.|+..+ +..++.+.++++.||++. +|+++||+++++.+..+.++++.+..+ |.+|++|.+|.+++++..
T Consensus 108 ~~~~is~~~~~~~~g~~~i~ia~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~g--g~~~l~d~~G~ii~~~~~ 180 (217)
T 4dah_A 108 KKTVISDSYSSRITGQPIFTICVPVLDS---KRNVTDYLVAAIQIDYLKNLINLLSPD--VYIEVVNQDGKMIFASGQ 180 (217)
T ss_dssp CSCEECCCEECTTTCSEEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHHHHCTT--SCEEEEETTSCEEEEESC
T ss_pred CCcEEeceEEcCCCCCEEEEEEEEEECC---CCCEEEEEEEEEcHHHHHHHHHhcCCC--cEEEEEcCCCCEEEeCCC
Confidence 567777544 456688999999999996 789999999999999999999998654 899999999999988765
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.25 E-value=2.2e-06 Score=97.28 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
++.+++.|||+||+++. ...|.|.+.. ++ ...|+|.|+
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~---------------------------------------~~--~~~i~V~Dn 61 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER---------------------------------------GG--AKLIRIRDN 61 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe---------------------------------------CC--ceEEEEEEc
Confidence 57899999999999997 4566665321 00 124899999
Q ss_pred CCCCChhhHhhhhcccccCCCCC------CCCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001298 619 GCGIDQSKWETVFESFEQGDPST------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~~~s~------~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g 673 (1105)
|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.|.|...
T Consensus 62 G~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~ 117 (333)
T 1b63_A 62 GCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTA 117 (333)
T ss_dssp SCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECT
T ss_pred CCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecC
Confidence 99999999999999998764211 12356799999987554 3688888764
No 141
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=98.14 E-value=1.5e-05 Score=87.87 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=63.5
Q ss_pred CCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCC
Q 001298 200 DGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 200 ~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
.+++.|+..+.. ++.++++++.||++ +|+++||+++++.+..+.+++..+..+.+|.+|++|.+|.+++++..
T Consensus 134 ~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 206 (291)
T 3li9_A 134 TGKDTLTEPYFY-EGIFMVSYDSPIFK----NGEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTGIFLSHPTQ 206 (291)
T ss_dssp HCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEECHHHHHHHTTCCBTTTBEEEEECTTCBBSCCSSC
T ss_pred hCCCEEEccEEe-CCEEEEEEEEEEEE----CCEEEEEEEEEeeHHHHHHHHHhCCcCCCeEEEEEeCCCeEEEcCCh
Confidence 377889877654 67899999999996 68899999999999999999988888889999999999999987653
No 142
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.13 E-value=4.9e-06 Score=95.32 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
++.+++.|||+||+++.. +.|.|.+.. ++ ...|+|.|+
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~~---------------------------------------~~--~~~I~V~Dn 71 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLKD---------------------------------------YG--VDLIEVSDN 71 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEe---------------------------------------CC--cEEEEEEEC
Confidence 568999999999999863 456655321 00 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC-----CCCCCc-cchHHHHHHHHHHcCCEEEEEEeC
Q 001298 619 GCGIDQSKWETVFESFEQGDPSTT-----RKHGGT-GLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~~~s~~-----~~~~Gt-GLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
|+||++++++++|++|++.+.... ....|. |+||+.+..+ . ++.|.|..
T Consensus 72 G~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~ 126 (365)
T 1h7s_A 72 GCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCH 126 (365)
T ss_dssp SCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEEC
T ss_pred CCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEcc
Confidence 999999999999999997643211 011244 9999987665 2 77887765
No 143
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.06 E-value=9.9e-06 Score=91.74 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
++.+++.|||.||+++. .+.|.|.+.. ++ ...|+|.|+
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~---------------------------------------~~--~~~I~V~Dn 65 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKE---------------------------------------GG--LKLIQIQDN 65 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG---------------------------------------GG--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEe---------------------------------------CC--EEEEEEEEC
Confidence 56799999999999994 3566665321 01 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001298 619 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g 673 (1105)
|+|||+++++++|+||+..+.... ...|-.|.||+-+..+. ++.|.|...
T Consensus 66 G~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~ 121 (348)
T 3na3_A 66 GTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTA 121 (348)
T ss_dssp SCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECT
T ss_pred CcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEEC
Confidence 999999999999999998754321 12344588887655442 688888754
No 144
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=98.02 E-value=8.1e-06 Score=89.99 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=63.6
Q ss_pred CCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCC
Q 001298 200 DGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 200 ~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
.+++.|+..+.. ++.++++++.||++ +|+++||+++++.+..+.+++..+..+.+|.+|++|.+|.+++++..
T Consensus 133 ~~~~~~s~p~~~-~~~~~i~~~~pi~~----~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~~ 205 (290)
T 3lib_A 133 TEKDVLTEPYFY-EGVFMVSYVSPIMK----EGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSGVILSHPTH 205 (290)
T ss_dssp HCSCEECCCEEE-TTEEEEEEEEEEEE----TTEEEEEEEEEEEHHHHHHHHHHCCBTTTBCEEEECTTCBBCCCSSC
T ss_pred cCCCEEEcCEEe-CCeEEEEEEEEEEE----CCEEEEEEEEEEeHHHHHHHHHhCCcCCceEEEEEeCCCeEEEcCCc
Confidence 367888877654 67899999999995 68899999999999999999999888889999999999999987653
No 145
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.01 E-value=3.9e-06 Score=97.76 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhHhccc----CCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEE
Q 001298 536 DPGRVFQIFSNLINNSIKFT----SSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLAL 611 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKfT----~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1105)
+...+..++.+|+.||++|+ ..|.|.|++... ....+
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~---------------------------------------~~~~l 334 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALA---------------------------------------GDGNV 334 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC---------------------------------------TTSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc---------------------------------------CCCEE
Confidence 34678999999999999998 367787765321 01247
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEecCC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLYLLLGA 686 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~lpl~~ 686 (1105)
.++|.|+|+|+|+. + ..++.|+||.|++++++.++ +.+. +.|+++++.+++..
T Consensus 335 ~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~~----~~~~-~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 335 RASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEAR----IMHG-AGGTTATLTHRLSR 387 (399)
T ss_dssp EEEEEESCBC-----------------------------CHHHHHTTSSEEE----EEEE-TTEEEEEEEEECEE
T ss_pred EEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhee----eEEC-CCcEEEEEEEEcCC
Confidence 89999999999876 1 12367999999999988654 5444 67999999998854
No 146
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=98.01 E-value=1.2e-05 Score=86.75 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCcceeeeee-ecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCC
Q 001298 200 DGVASWHVAV-SKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 200 ~~~~~w~~~~-~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
.+++.|+..+ +..++.++++++.||++. +|+++||+++.+.+..+.++++.+..+.+|.+|++|.+|.+++++.+
T Consensus 109 ~~~~~is~p~~~~~~g~~~i~~~~pi~~~---~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p~ 184 (254)
T 3lif_A 109 DHTLLITGPIQSRTSGVWVFVVSRRLETT---DGKFFGVVVATIESEYFSTFYKTFDLGPGGSISLLHSDGRLLIQWPS 184 (254)
T ss_dssp CCCCEEEEEEECTTTCCEEEEEEEEEECT---TCCEEEEEEEEECHHHHHHHHTTSCCCTTCEEEEEETTSBEEEEETT
T ss_pred CCCeEECCceecCCCCcEEEEEEeeeeCC---CCCEeEEEEEEECHHHHHHHHHhcCcCCCcEEEEEeCCCcEEEECCC
Confidence 3667787554 445688999999999996 78999999999999999999998888889999999999999998544
No 147
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.97 E-value=1.8e-05 Score=73.71 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001298 420 NNYKSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDL 482 (1105)
Q Consensus 420 ~~~Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdl 482 (1105)
.+.+.+|++++||||||||++|.++++.+.+. .......|..++.+|..+++++|+|
T Consensus 57 ~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~------~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 57 ADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467899999999999999999999987421 2334578999999999999999987
No 148
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=97.96 E-value=2.2e-05 Score=85.39 Aligned_cols=192 Identities=13% Similarity=0.142 Sum_probs=120.6
Q ss_pred cchhHhhhhhhHHhhcchHHHHHHhhhhhhHhhHHhhhhhHHHHhhcCCCc-chHHHHHHHHHHHHhHHHHhccccccce
Q 001298 23 KSLDTLAYGLRYELLQRPLLRMWNIVNSTAEITAAQVKLSEYVIKRYNKPA-TQAEQIQLYEVMRDVTWAMFASRKALNA 101 (1105)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1105)
+++.+-+.....+..+....++.+.|+....+....++..+.. +.... .. .+.+++++-..+...+.+..
T Consensus 4 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~---~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 74 (274)
T 3lic_A 4 LSIEKRLYENLAQESSHSASRLQFLLEHAQANTQGLSDFIGLL---ADKDDINN------PEKLKTVLTNRIQRNPDFFG 74 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTTTTTC------HHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccccCC------HHHHHHHHHHHHhcCcceeE
Confidence 3455556666667777777778888887777766666665443 11110 11 23344455555677788889
Q ss_pred EEEEeecceeEEeeccCCCCceEEEEecCCCcccCCCCCCCCCccccccCCCCCCccCCcceeeeeccCCCccccccccc
Q 001298 102 ITINYKNGFVQAFHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNISAIWYREPLDPITGEKIGKA 181 (1105)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wy~~~~~~~~g~~~~~~ 181 (1105)
+.+.+.+|.+-.. ..-..|+|.+-++.... . . ... +.++.. ....||++++
T Consensus 75 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~-~-~~~---~~d~~~-~~~~w~~~a~----------- 125 (274)
T 3lic_A 75 SAIAFKPNTFPNK-----KLFSPYVYRSGSGFNYL-------D-I-GAD---GYDYTD-GNWDWWSKAI----------- 125 (274)
T ss_dssp EEEEECTTSSTTC-----SCBCEEEEECSSSEEEE-------E-H-HHH---TCCTTS-SSCHHHHTTT-----------
T ss_pred EEEEecCccCCCc-----cccceeEEECCCceEEE-------e-c-ccc---CCCCCC-CCCcHHHHHH-----------
Confidence 9999888765221 11122333331100000 0 0 000 111110 1467999886
Q ss_pred CCCCCCCcccccccccCCCCcceeeeeeecc-cC-cccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcc
Q 001298 182 SPIPPDDLINIAGISQVPDGVASWHVAVSKF-TN-SPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHS 259 (1105)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~-~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~ 259 (1105)
..+++.|+..+... ++ .++++++.||++ +|+++||+++++.+..+.+++. + ..
T Consensus 126 -----------------~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~----~g~~~Gv~~~~i~l~~l~~~~~-~---~~ 180 (274)
T 3lic_A 126 -----------------NQVGGYWSKAYFDEGAGNVLMITYAVPFGV----QPDYFGVTTVDLALDRLPEQLG-I---AP 180 (274)
T ss_dssp -----------------TTSSCEECCCEECTTTTCSEEEEEEEEESC----TTCCCEEEEEEEEGGGHHHHHT-S---CG
T ss_pred -----------------hcCCCEEEeeEEcCCCCceEEEEEEEEEcc----CCEEEEEEEEEEEHHHHHHHhc-c---CC
Confidence 44677888655433 34 589999999997 5789999999999999999988 5 77
Q ss_pred eEEEEECCcceEEEecCC
Q 001298 260 GHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 260 ~~iyi~~~~G~ll~~s~~ 277 (1105)
|.+|++|.+|.+++++..
T Consensus 181 g~~~l~d~~G~ii~~~~~ 198 (274)
T 3lic_A 181 SRLVVLDDQGRLIFHSDK 198 (274)
T ss_dssp GGEEEECTTSCEEECSSH
T ss_pred ceEEEECCCCCEEEeCCH
Confidence 889999999999987643
No 149
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=97.71 E-value=7e-05 Score=79.08 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=60.2
Q ss_pred Ccceeeeeee-cccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecC
Q 001298 201 GVASWHVAVS-KFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATST 276 (1105)
Q Consensus 201 ~~~~w~~~~~-~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~ 276 (1105)
+++.|+..+. ..++.++++++.||++. .+|+++||+++...+..+.++++.+..+.+|.+|+.|.+|.+++++.
T Consensus 102 ~~~~~s~~~~~~~~~~~~i~~~~pi~~~--~~g~~~Gvl~~~i~~~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~~ 176 (240)
T 3c8c_A 102 GKLVITAPYADSASGEILVSVATPVKDS--ATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPK 176 (240)
T ss_dssp TSCEECCCEECTTTCCEEEEEEEEEECT--TTCCEEEEEEEEECHHHHHHHHTCSCCTTSEEEEEEETTSBEEECSS
T ss_pred CCcEEeeceEcCCCCeEEEEEEEEEEEC--CCCeEEEEEEEEEEHHHHHHHHHhcccCCceEEEEEcCCCcEEEeCC
Confidence 5567775543 34567899999999984 12899999999999999998888777777899999999999998764
No 150
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.69 E-value=0.00027 Score=74.91 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=58.4
Q ss_pred CccEEEEcC-CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEE------EcCCCHHHHHHH
Q 001298 1016 RFDLILMDC-QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYL------TKPIDSERMVST 1088 (1105)
Q Consensus 1016 ~~DlIlmDi-~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KPi~~~~L~~~ 1088 (1105)
..+++++++ .++.|+|++ ++.|++.... .++|||++++.++.++..+|+++|||+++ .+|++++++...
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHH
Confidence 457999997 888899976 5556554332 36999999999999999999999999995 799999998876
Q ss_pred HH
Q 001298 1089 IL 1090 (1105)
Q Consensus 1089 I~ 1090 (1105)
+.
T Consensus 220 l~ 221 (237)
T 3cwo_X 220 LK 221 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 151
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.66 E-value=3.4e-05 Score=88.09 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhHhcccCCCcEEEEeeccccCCCCCCccCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeC
Q 001298 539 RVFQIFSNLINNSIKFTSSGHIIIRGWCENLDTSKNTAEFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDT 618 (1105)
Q Consensus 539 rL~QIL~NLL~NAIKfT~~G~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~Dt 618 (1105)
++.+++.|||+||+++. ...|.|.+.. ++ ...|+|.|+
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~~---------------------------------------~~--~~~i~V~Dn 62 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFKD---------------------------------------YG--LESIECSDN 62 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEET---------------------------------------TT--TSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEEe---------------------------------------CC--EEEEEEEEC
Confidence 56799999999999985 4456654310 11 135899999
Q ss_pred CCCCChhhHhhhhcccccCCCCCC------CCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001298 619 GCGIDQSKWETVFESFEQGDPSTT------RKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673 (1105)
Q Consensus 619 G~GI~~e~l~~IFe~F~q~~~s~~------~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g 673 (1105)
|+||++++++.+|++|+..+.... ...|-.|-||+-+..+ +++.|.|...
T Consensus 63 G~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~ 118 (367)
T 3h4l_A 63 GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTS 118 (367)
T ss_dssp SCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESS
T ss_pred CCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEEC
Confidence 999999999999999996543221 1112236777655443 2688888753
No 152
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.42 E-value=0.00048 Score=71.65 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccceeecHHHHHH
Q 001298 425 QFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSKVESGKMELENTEFDLQKELE 504 (1105)
Q Consensus 425 ~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlskie~g~~~l~~~~~dL~~ll~ 504 (1105)
+.+....||..+=|..|.|++++ . -.++..+++..+....+... .++++.. ..+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql-~----~ydea~~yI~~~~~~~q~~~-------~~~~i~~-------------P~la 77 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSL-Q----KYDRVFEMIEEMVIDAKHES-------KLSNLKT-------------PHLA 77 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHHHHHHH-------HHHTTTC-------------HHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHc-C----CHHHHHHHHHHHHHHHHHHH-------HHHhCCC-------------HHHH
Confidence 46778899999999999999995 2 13455556655544444322 1333321 1233
Q ss_pred HHHHHHHHHHhcCCcEE-EEEeCCCCCceEEeCHHHHHHHHHHHHhhHhccc-------CCCcEEEEeeccccCCCCCCc
Q 001298 505 ELVDMFSVQCSNHNVET-VLDLSDNIPRNVRGDPGRVFQIFSNLINNSIKFT-------SSGHIIIRGWCENLDTSKNTA 576 (1105)
Q Consensus 505 ~v~~~~~~~a~~k~i~l-~~~~~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-------~~G~i~v~~~~~~~~~~~~~~ 576 (1105)
.++-.....+++.++++ .++....++ ..+..+ .||++||+... ..+.|.|.....
T Consensus 78 ~lLl~K~~~a~e~~i~lev~~~~s~l~----~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~--------- 140 (192)
T 1ixm_A 78 FDFLTFNWKTHYMTLEYEVLGEIKDLS----AYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTD--------- 140 (192)
T ss_dssp HHHHHGGGSCCSSEEEEEEESSCCCCT----TTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECC---------
T ss_pred HHHHHHHHHhccCCeEEEEecCccccC----CCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEe---------
Confidence 33333333444444444 223222222 233344 45554444332 345666654210
Q ss_pred cCCccccccchhhhhhhhhhhccccccccCCceEEEEEEEeCCCCCChhhHhhhhcccc
Q 001298 577 EFPTDRKKFGRAFRTKLKQQANNAMNFREDNKLALCFEVDDTGCGIDQSKWETVFESFE 635 (1105)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~V~DtG~GI~~e~l~~IFe~F~ 635 (1105)
.+...+.|+|.|+|+||+++.++++|++.|
T Consensus 141 -----------------------------~~~~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 141 -----------------------------HPDRQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp -----------------------------CSSSSCEEEEEEESCBSCGGGCC-------
T ss_pred -----------------------------cCCCEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 001236799999999999999999998655
No 153
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=97.39 E-value=0.00086 Score=74.99 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=51.6
Q ss_pred eecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCCC
Q 001298 209 VSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 278 (1105)
Q Consensus 209 ~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 278 (1105)
++..++.|.+.++.||++ +|+++||+++...+..+.+.+. +..+.+|++|.+|.+++++..+
T Consensus 162 ~~~~tg~~~i~~a~PV~~----~G~viGVv~v~i~l~~l~~~~~----~~~g~~~l~D~~G~ii~~~~~~ 223 (305)
T 3e4o_A 162 MGTVSKRPGLYISRRVDG----PGGPLGVIVAKLEFDGVEADWQ----ASGKPAYVTDRRGIVLITSLPS 223 (305)
T ss_dssp ECTTTCCEEEEEEEEEEE----TTEEEEEEEEEECCHHHHHHHH----HHTSCEEEECTTCBEEEESSGG
T ss_pred EecCCCCEEEEEEEEEcc----CCeEEEEEEEEEcHHHHHHHHh----cCCceEEEEcCCCeEEEeCChh
Confidence 345667899999999987 5889999999999988888764 3678999999999999876653
No 154
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=97.23 E-value=0.00087 Score=74.51 Aligned_cols=142 Identities=13% Similarity=0.214 Sum_probs=87.5
Q ss_pred HHHHhHHHHh-ccccccceEEEEeecceeEE-eeccCCCCceEEEEecCCCcccCCCCCCCCCccccccCCCCCCccCCc
Q 001298 84 VMRDVTWAMF-ASRKALNAITINYKNGFVQA-FHRDHRSNNTFYIYSDLSNYSIGTSGPYDSNLISSREGWNDQSIKGNI 161 (1105)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1105)
.+.+. |..| .+.+.+..|.+...+|...+ .+++ ..+. ++... .....-.
T Consensus 64 ~l~~~-~~~~~~~~~~~~~i~lid~~G~~i~~~~~~--~~~~-~~~p~-------------------------~~l~n~~ 114 (295)
T 3lid_A 64 ILENM-WSSVARNQKLYKQIRFLDTSGTEKVRIKYD--FKTS-IAGPS-------------------------LILRDKS 114 (295)
T ss_dssp HHHHH-HHHHHHHHCCEEEEEEEETTSBEEEEEEEE--TTTT-EEEEC-------------------------SCCCBCT
T ss_pred HHHHH-HHHHHhcCccccEEEEECCCCCEEEEEEcc--CCce-eEcCc-------------------------cccccch
Confidence 44444 4444 46788999999999997654 4554 2222 22221 0011112
Q ss_pred ceeeeeccCCCcccccccccCCCCCCCcccccccccCCCCcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEee
Q 001298 162 SAIWYREPLDPITGEKIGKASPIPPDDLINIAGISQVPDGVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVT 241 (1105)
Q Consensus 162 ~~~wy~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~ 241 (1105)
.++||++++.-..|+.+..+.... ...|+ + -..+.|+++++.||++ +|+++||+++.
T Consensus 115 ~R~yf~~a~~~~~~~~~~s~~~~~------------~~~g~-----~--~~~~~p~i~~a~pV~~----~g~~~GVlv~~ 171 (295)
T 3lid_A 115 AREYFKYAQSLDNEQISAWGIELE------------RDKGE-----L--VYPLSPSLRILMPISV----NDVRQGYLVLN 171 (295)
T ss_dssp TSHHHHHHHHSCTTCCEECCCEEC------------EETTE-----E--CSSCCEEEEEEEEEEE----TTEEEEEEEEE
T ss_pred hhHHHHHHhcCCCCcEEEeCceec------------ccCCc-----c--cCCCCCEEEEEEEEcc----CCeEEEEEEEE
Confidence 578999997544444433221110 01111 0 0234789999999974 78899999999
Q ss_pred ccchhHHHHHHHHHhhcceEEEEECCcceEEEecCCC
Q 001298 242 TALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNA 278 (1105)
Q Consensus 242 ~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~~ 278 (1105)
..+..+.+.++ ...+.++.+|++|.+|.+++++...
T Consensus 172 i~l~~l~~~~~-~~~~~~~~~~l~d~~G~~l~~~~~~ 207 (295)
T 3lid_A 172 VDIEYLSSLLN-YSPVRDFHIELVKHKGFYIASPDES 207 (295)
T ss_dssp EEHHHHHHHHS-EETTTTEECEEEETTSBEEECSCGG
T ss_pred ecHHHHHHHHh-hcccCCCcEEEEcCCCCEEecCCcc
Confidence 87776666653 2345589999999999999987543
No 155
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.15 E-value=0.00071 Score=62.53 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001298 423 KSQFLANMSHELRTPMAAIIGLLEILKSDDQLTNEQYSTVCQIKKSSYALLRLLNRILDLSK 484 (1105)
Q Consensus 423 Ks~Fla~~SHELRTPL~~I~G~~elL~~~~~l~~e~~~~l~~I~~ss~~L~~LIndiLdlsk 484 (1105)
+.+|++.+|||||||++.|.+.++.+... ..+....+...+.+|..++++++++++
T Consensus 60 ~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 60 RTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999977432 134567789999999999999998764
No 156
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.12 E-value=0.00024 Score=75.59 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=36.1
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCC----------CCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGD----------PSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~----------~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++...|..+.... .......|..|+|+.-+.. .+-++.|.|..
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~ 140 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKS 140 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEec
Confidence 479999999999999988876654321 0111233557999865533 33456666554
No 157
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.11 E-value=0.00073 Score=73.25 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=75.0
Q ss_pred ccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 945 ~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
..+.|.+||||||++.++..++.+|+..|++|..+.+ . ...+||+|++|.
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-~-----------------------------~~~~~~~ii~d~ 56 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-Q-----------------------------EPTPEDVLITDE 56 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-C-----------------------------CCCTTCEEEEES
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-C-----------------------------CCCcCcEEEEcC
Confidence 3467889999999999999999999999999988764 0 124799999999
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
.||..++.+ .++.++....... .+.+...++.||+...++...+.+++..
T Consensus 57 ~~~~~~~~~-----------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 106 (254)
T 2ayx_A 57 VVSKKWQGR-----------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYLI 106 (254)
T ss_dssp SCSCCCCSS-----------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHTC
T ss_pred CCccccccc-----------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhhh
Confidence 999864321 2455554322110 1345568999999999999999887743
No 158
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.76 E-value=0.0021 Score=74.07 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC---CCCCCCCC-ccchHHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVN 660 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~--------l~~IFe~F~q~~~---s~~~~~~G-tGLGLaIvk~LVe 660 (1105)
.|+|.|+|+|||.+. ++.+|.+|+.+.. ......+| .|.||+.|..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 389999999999998 7889998765532 11122344 8999999998875
No 159
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.63 E-value=0.00044 Score=75.60 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC---------------CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDP---------------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~---------------s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++...|..+.+... ......|..|+|+.-+..++ .++.|.|..
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~ 147 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKH 147 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEe
Confidence 4789999999999998776644321100 00112256899997765443 445555543
No 160
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.54 E-value=0.0037 Score=68.18 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=37.5
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC----------CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDP----------STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~----------s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++...|.++..... ......|..|+|+.-+-.+ +-++.|.|..
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~ 182 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKH 182 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEEC
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEec
Confidence 4889999999999999877765542210 1112345679999866554 3456676664
No 161
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.47 E-value=0.0011 Score=71.33 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCC------------CCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPS------------TTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s------------~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|+|+||+++++...|.++.+.... .....|..|+||.-+-. .+-++.|.|..
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~ 163 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRA 163 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEec
Confidence 38899999999999999888665432110 01123568999975433 23456666654
No 162
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=96.24 E-value=0.0034 Score=67.22 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred CcceeeeeeecccCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHHHHHhhcceEEEEECCcceEEEecCC
Q 001298 201 GVASWHVAVSKFTNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMKELVEVHSGHIYLTSQEGYLLATSTN 277 (1105)
Q Consensus 201 ~~~~w~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~~l~~~~~~~iyi~~~~G~ll~~s~~ 277 (1105)
+.+.|. .++..++.+++.++.||+ . +|+++||+++...+..+.+++. +..|.+|++|.+|.+++++..
T Consensus 114 ~~~~~~-~~~~~~g~~~i~~~~pi~-~---~g~~~Gvv~~~i~l~~l~~~~~----~~~g~~~l~d~~G~ii~~~~~ 181 (260)
T 3by9_A 114 QKSQYF-ALGSTSGQRGYYYAYPVI-Y---AAEILGVIVVKMDLSAIEQGWQ----NKSSYFVATDDHQVVFMSSQP 181 (260)
T ss_dssp SCEEEE-EECTTTCCEEEEEEEEEE-E---TTEEEEEEEEEECSHHHHHTCC----CSSCEEEEECTTCBEEEESSG
T ss_pred CCceEE-EEecCCCCEEEEEEEEEc-c---CCeEEEEEEEEEeHHHHHHHHh----cCCCcEEEECCCCeEEEcCCh
Confidence 345563 445566789999999998 4 6889999999998887776654 578999999999999997654
No 163
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=96.01 E-value=0.067 Score=52.06 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=85.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
+..++++++....|..+...++..|.. +..+++..++...++. .+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~----------------------------------~~ 57 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK----------------------------------GD 57 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh----------------------------------CC
Confidence 346888999999999999999999975 4455554444433321 24
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
+.++++|+.++++++..+.+.++..... +...+++.+.........+..+.|.+.++.||+....+...+..++
T Consensus 58 ~DlillD~~MP~mdG~el~~~ir~~~~~--~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 58 FDFVVTDWNMPGMQGIDLLKNIRADEEL--KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTT--TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhCCCC--CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 5789999999999997666665543322 2233455555555666677778999999999999999998887654
No 164
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.81 E-value=0.0059 Score=75.75 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHccc
Q 001298 963 IVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDGYEATIEIRKSE 1042 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~ 1042 (1105)
+.|...|++.||+|..+.++.+|+..++. ...++.|++|++|+ +.+++++||+..
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------------------~~~i~avIld~d~~---~~~ll~~Ir~~~ 74 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIEN----------------------NARLCGVIFDWDKY---NLELCEEISKMN 74 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHH----------------------CTTEEEEEEEHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------------------CCCceEEEEecccc---HHHHHHHHHHhC
Confidence 34558899999999999999999999975 24699999999997 789999999863
Q ss_pred cccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCC-HHHHHHHHHH
Q 001298 1043 SEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPID-SERMVSTILR 1091 (1105)
Q Consensus 1043 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~-~~~L~~~I~~ 1091 (1105)
..+||++++......+.....-.++++|+.+..+ .+.+..+|.+
T Consensus 75 -----~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (715)
T 3n75_A 75 -----ENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQ 119 (715)
T ss_dssp -----TTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHHHHHHHHH
T ss_pred -----CCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHHHHHHHHH
Confidence 4699999998865444332224578999999875 4444444433
No 165
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=95.17 E-value=0.18 Score=53.65 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=83.4
Q ss_pred ceEEEEEEecCCCCccccccCCCCCCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCC
Q 001298 675 GTLMQLYLLLGASSESKQIYDADFPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNG 754 (1105)
Q Consensus 675 GT~f~~~lpl~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 754 (1105)
||+|++.+|+..+.... ....+...+++.++....+..+..++...|..+..+.+...+...+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~------------ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE------------ 65 (250)
T ss_dssp ----------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH------------
T ss_pred CCccccccceeeccCCC---CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh------------
Confidence 89999999875432221 112234678889999999999999999888877766655554433322
Q ss_pred CCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCc
Q 001298 755 FDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQN 834 (1105)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1105)
.+..++++|..++++++..+...++.. ..... +++..............+.|.+
T Consensus 66 ----------------------~~~dlvllD~~lp~~~g~~~~~~lr~~---~~~~~-ii~lt~~~~~~~~~~~~~~Ga~ 119 (250)
T 3r0j_A 66 ----------------------TRPDAVILDVXMPGMDGFGVLRRLRAD---GIDAP-ALFLTARDSLQDKIAGLTLGGD 119 (250)
T ss_dssp ----------------------HCCSEEEEESCCSSSCHHHHHHHHHHT---TCCCC-EEEEECSTTHHHHHHHHTSTTC
T ss_pred ----------------------CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCC-EEEEECCCCHHHHHHHHHcCCc
Confidence 134689999999998875544444321 12222 3333434444455566778999
Q ss_pred EEEecCCChhHHHHHHHHHHhc
Q 001298 835 IVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 835 ~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++.||+....+...+..+...
T Consensus 120 ~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 120 DYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988887653
No 166
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.07 E-value=0.0069 Score=65.00 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=35.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCC---------------CCCCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDPST---------------TRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNS 673 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~s~---------------~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g 673 (1105)
.|+|.|||+||+++++...|..+.+..... ....|..|+|+.-+-.++ .++.|.|...
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr~~ 152 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 152 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEeCC
Confidence 479999999999999988886654321100 001134688886554443 5677777653
No 167
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=94.89 E-value=0.037 Score=63.65 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC---CCCCCCCC-ccchHHHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSK--------WETVFESFEQGDP---STTRKHGG-TGLGLSIVRTLVNK 661 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~--------l~~IFe~F~q~~~---s~~~~~~G-tGLGLaIvk~LVe~ 661 (1105)
.|+|.|+|+|||.+. .+-+|..+..+.. ......+| .|.||+.|..+-+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 389999999999998 5568886554321 11112234 89999999888753
No 168
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.35 E-value=0.63 Score=46.57 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=82.6
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
..+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..+|+|.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~-----------------------~~~diV~ 74 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ-----------------------EDVDVIG 74 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------------------cCCCEEE
Confidence 4589998 888898999999999999999854 356677777754 4799999
Q ss_pred EcCCCCCC-C-HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1022 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1022 mDi~MP~m-d-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+-+.|... . --++.+.+|+. +..+++|+ +-+.....+...+.+.|+|.+...--+..+....+.++++
T Consensus 75 lS~~~~~~~~~~~~~i~~L~~~----g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 75 VSILNGAHLHLMKRLMAKLREL----GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp EEESSSCHHHHHHHHHHHHHHT----TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred EEeechhhHHHHHHHHHHHHhc----CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 99887631 1 13344555542 12356655 4556666666677899999877655566667777766654
No 169
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=93.97 E-value=0.48 Score=46.21 Aligned_cols=119 Identities=10% Similarity=0.166 Sum_probs=79.5
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
...+++.+.....+..+..++...|..+. .+.....+...+... ..+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~--------------------------------~~~ 83 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH--------------------------------YPN 83 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------------------------GGG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc--------------------------------CCC
Confidence 34688889999999999999999888776 565555544433221 012
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
..++++|..+.+.++..+.+.++. ......+ ++..............+.|...++.||+....+...+..++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIME---FDKNARV-IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHH---HCTTCCE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCEEEEeccCCCccHHHHHHHHHh---hCCCCcE-EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 468899999999887554444432 2222223 33333344445566778899999999999999988876643
No 170
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=93.85 E-value=0.67 Score=44.44 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=78.9
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.+.....+..+..++...|..+..+...+.+...+. ..+.
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 59 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA----------------------------------EEDY 59 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH----------------------------------HSCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCCC
Confidence 456788888888899999999988877666554443332221 1245
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
.++++|..++++++..+.+.++...........+++..............+.|.+.++.||+....+...+..+.
T Consensus 60 dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 60 DAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 789999999999886655555433222122223334444444445566677899999999999999999887764
No 171
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.63 E-value=0.1 Score=62.47 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=30.0
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC------------CCCCCCCCccchHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDP------------STTRKHGGTGLGLSIVRTL 658 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~------------s~~~~~~GtGLGLaIvk~L 658 (1105)
.|+|.|||+||+++++..-|...-.... ......|..|+|+.=+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 4789999999999998876654321110 0112346779998655554
No 172
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=93.50 E-value=0.66 Score=41.94 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC
Q 001298 950 LRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM 1029 (1105)
Q Consensus 950 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m 1029 (1105)
..||+|..|...-..++.++....|.+.+...-. ....-|+|+|...+-.
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-----------------------------~e~~AdlIfCEYlLLP- 62 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-----------------------------QELSADLVVCEYSLLP- 62 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-----------------------------CCTTEEEEEEEGGGSC-
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC-----------------------------CcccceeEEEeeecCh-
Confidence 4799999999999999999988888888765322 2345899999865421
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcC
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNM 1096 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~ 1096 (1105)
+.|+... -....-+|+|=.--+++...+.+.-|+. ||..|++++.|.++|+..+++.
T Consensus 63 ------e~ifS~k---~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 63 ------REIRSPK---SLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp ------TTCCCCT---TCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred ------HHhcCCC---CCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 2233211 1122346666666677888899999999 9999999999999999988765
No 173
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=93.33 E-value=0.14 Score=53.50 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=23.0
Q ss_pred EEEEeCCCCCChhh--------Hhhh-hcccccCCC---CCCCCCCCccchHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSK--------WETV-FESFEQGDP---STTRKHGGTGLGLSIVRTLVN 660 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~--------l~~I-Fe~F~q~~~---s~~~~~~GtGLGLaIvk~LVe 660 (1105)
|+|.|+|+|||.+. .+.+ +.+....+- ......|=.|.||+.+..+-+
T Consensus 51 i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 51 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp EEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 89999999999988 3453 343322110 011112335889988877753
No 174
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=92.68 E-value=0.11 Score=56.74 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCChhhHhhhhc----c----c---ccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFE----S----F---EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe----~----F---~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++..-+. . | ++.+......-|-.|+|+.-|-.+ +-++.|.|..
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v----adkV~V~Sk~ 161 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV----ADKVIVYTKN 161 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc----cCEEEEEEec
Confidence 478999999999999764332 1 1 111011123457789998665332 3446666654
No 175
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.15 Score=62.22 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001298 612 CFEVDDTGCGIDQSKWETVFES 633 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~ 633 (1105)
.|+|.|||+||+++++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999998766543
No 176
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=92.40 E-value=0.19 Score=57.38 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhhHhcc
Q 001298 536 DPGRVFQIFSNLINNSIKF 554 (1105)
Q Consensus 536 D~~rL~QIL~NLL~NAIKf 554 (1105)
|+..|..++.-||+|||..
T Consensus 27 ~~~gl~~~v~ElvdNsiDe 45 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEE 45 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhH
Confidence 6678999999999999985
No 177
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=91.90 E-value=0.11 Score=63.18 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=29.4
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCC------------CCCCCCCCccchHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQGDP------------STTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~~~------------s~~~~~~GtGLGLaIvk~LV 659 (1105)
.|+|.|||+||+++++..-|....+... ......|..|+|+.=+-.++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 4789999999999998766544321110 01112245689987665554
No 178
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=91.82 E-value=0.058 Score=58.19 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------cc---cCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFES--------FE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~--------F~---q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++..-|.+ |. +.. ......|-.|+||+-+-.+ .-++.|.|..
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~-~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~ 174 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVTVITKH 174 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEEC
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhccc-CCccccCCCcchHHHhhcc----CCeEEEEEcC
Confidence 4789999999999998655532 21 111 1122346779999876332 2356666654
No 179
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=91.70 E-value=2.5 Score=39.88 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=81.8
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+..++...|. .+..+.....+...+.... ....+
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~-----------------------------~~~~~ 60 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELY-----------------------------AAGRW 60 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH-----------------------------TSSCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhh-----------------------------ccCCC
Confidence 4577788888888899999999887 6666666555544433211 11235
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcC-CcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+++.++..+.+.++...........+++................| .+.++.||+....+...+.....+
T Consensus 61 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 61 PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 578999999999887555444443211011222233344444444445556667 889999999999999998887653
No 180
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=91.55 E-value=1.7 Score=40.13 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=77.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...++..|..+..+.+...+...++ ..+..+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~dl 49 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS----------------------------------EFTPDL 49 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT----------------------------------TBCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH----------------------------------hcCCCE
Confidence 4677778888888889999998887776655444333221 123468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
+++|..++++++..+.+.++..... ....+++..............+.|.+.++.||+....+...+....
T Consensus 50 vllD~~~p~~~g~~~~~~l~~~~~~--~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 50 IVLXIMMPVMDGFTVLKKLQEKEEW--KRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp EEECSCCSSSCHHHHHHHHHTSTTT--TTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCCCcHHHHHHHHHhcccc--cCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 8999999999886554444332111 1122333444444455566678899999999999999988877654
No 181
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=91.48 E-value=2.7 Score=39.21 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=80.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...+.. ..+..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~---------------------------------~~~~d 54 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY---------------------------------QKRIG 54 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH---------------------------------CTTEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh---------------------------------CCCCc
Confidence 457788888888888999999888777666554443332211 12367
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++... . ....+++..............+.|...++.||+....+...+.....+
T Consensus 55 lvi~D~~l~~~~g~~~~~~l~~~~--~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 55 LMITDLRMQPESGLDLIRTIRASE--R-AALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTST--T-TTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCCCHHHHHHHHHhcC--C-CCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 899999999988755444443321 1 222233334334444556667789999999999999999999887654
No 182
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=91.39 E-value=0.12 Score=63.00 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCChhhHhhhhcc
Q 001298 612 CFEVDDTGCGIDQSKWETVFES 633 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~ 633 (1105)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999998776643
No 183
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=91.34 E-value=2.7 Score=39.56 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=80.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...++..|..+..+.....+...+.. .+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~d 50 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK----------------------------------NLPD 50 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh----------------------------------CCCC
Confidence 357778888888888999998888777666554444333221 2346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+...++.... .....+++..............+.|.+.++.||+....+...+......
T Consensus 51 lvl~D~~lp~~~g~~~~~~lr~~~~--~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 51 ALICDVLLPGIDGYTLCKRVRQHPL--TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSGG--GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCC--cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 8899999999988555444433211 1122233444444444555667789999999999999999988887653
No 184
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=90.79 E-value=2.2 Score=39.99 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
.+..+++.+.....+..+...+...|..+..+.....+...+ . ..+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~--------------------------------~--~~~ 51 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--------------------------------S--HEH 51 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC--------------------------------C--TTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH--------------------------------h--ccC
Confidence 345688888888888889999988887766555443322111 0 123
Q ss_pred cEEEEEEeeccccChhHHHHHhhh-hhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNS-LDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.++++|..+++.++..+...++. ...........++..............+.|...++.||+....+...+..+..
T Consensus 52 -dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 52 -KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp -SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred -CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 68899999999887544444332 11100112223333333334445556678999999999999999998887664
No 185
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.75 E-value=1.3 Score=47.51 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=67.5
Q ss_pred HHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHHHH
Q 001298 965 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1037 (1105)
Q Consensus 965 l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~ 1037 (1105)
..+.|.+.|+.|. ++.|...|-.+.+ -.++.| |..-.|.-.| +++++.
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~------------------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~ 181 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE------------------------IGCIAV-MPLAGLIGSGLGICNPYNLRI 181 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH------------------------SCCSEE-EECSSSTTCCCCCSCHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH------------------------hCCCEE-EeCCccCCCCCCcCCHHHHHH
Confidence 4556677899987 5566665555443 257777 7776664333 788999
Q ss_pred HHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHH
Q 001298 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1091 (1105)
Q Consensus 1038 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1091 (1105)
|++. .++|||+=-+-..+++..+|++.|+|+.+. |--++..+..++..
T Consensus 182 I~e~------~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 234 (265)
T 1wv2_A 182 ILEE------AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKH 234 (265)
T ss_dssp HHHH------CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHhc------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 9873 358999877778999999999999999885 43345555555443
No 186
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=90.61 E-value=2.3 Score=38.98 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=75.0
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.+...+...+. ..+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~dl 49 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE----------------------------------ELQPDL 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TTCCSE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh----------------------------------hCCCCE
Confidence 4677777888888888899888877766555444333221 123468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+...++. .. .. .+++..............+.|.+.++.||+....+...+.....
T Consensus 50 ii~D~~~p~~~g~~~~~~lr~---~~-~~-~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 50 ILLDIMLPNKDGVEVCREVRK---KY-DM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEETTSTTTHHHHHHHHHHT---TC-CS-CEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cC-CC-CEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 899999998877544444332 11 22 23333333344444556678999999999999999888776543
No 187
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=90.46 E-value=0.24 Score=52.63 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccC----------CCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001298 612 CFEVDDTGCGIDQSKWETVFESFEQG----------DPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSP 674 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~F~q~----------~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~ 674 (1105)
.|+|.|||+||+++++...|.+.... +.......|-.|+||+-+-. .+-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCC
Confidence 47899999999999997666443210 00112234667999986633 2337888887643
No 188
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=90.30 E-value=3.2 Score=39.81 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=81.5
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.+.....+..+..++...|..+..+.....+...+.. .+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~ 59 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS----------------------------------REV 59 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH----------------------------------SCC
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc----------------------------------CCC
Confidence 4568888888888999999999988877776665554443322 235
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcC-CcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+++.++..+.+.++. ...... +++..............+.| ...++.||+....+...+..+...
T Consensus 60 dlvi~D~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 60 DLVISAAHLPQMDGPTLLARIHQ---QYPSTT-RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHH---HCTTSE-EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCcHHHHHHHHHh---HCCCCe-EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 68999999999887554444432 112222 33344344444455666777 889999999999999998887654
No 189
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=90.24 E-value=2.2 Score=39.58 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
.+..+++.+.....+..+..++...|..+..+.+...+...++ ..+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~ 51 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG----------------------------------GFT 51 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT----------------------------------TCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh----------------------------------cCC
Confidence 3456888888888899999999998887766655444333221 123
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCC-ChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+++.++..+.+.++. ......+ ++...........+..+.|...++.||+ ....+...+..+..+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~i-i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLEHIRN---RGDQTPV-LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CSEEEECCC-----CHHHHHHHHH---TTCCCCE-EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCEEEEecCCCCCCHHHHHHHHHh---cCCCCCE-EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 468889999888777554444432 2222223 3333333444445667789999999999 888888888877653
No 190
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=90.20 E-value=2.3 Score=43.64 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=85.5
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEecCCCCcccc----ccCCCCCCcEEEEeecChhhHHHHHHHHHhcCc-eeeeccc
Q 001298 658 LVNKMGGEIKVVKKNSPGTLMQLYLLLGASSESKQ----IYDADFPNTVVVLATVGSMERMIISQWLRKKKV-STLETSE 732 (1105)
Q Consensus 658 LVe~~gG~I~v~S~~g~GT~f~~~lpl~~~~~~~~----~~~~~~~~~~v~~~~~~~~~r~~~~~~~~~~g~-~~~~~~~ 732 (1105)
-+.+|||+|.|+|++|+||+|+|.+|+..+..... .......+..+++.++....+..+...+...|. .+..+..
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~ 94 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDS 94 (206)
T ss_dssp C---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCC
Confidence 46899999999999999999999999865432211 122234566899999999999999999999997 6666666
Q ss_pred chhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEEEEEeeccccChhHHHHHhhhhhhhhcccee
Q 001298 733 WHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMF 812 (1105)
Q Consensus 733 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~ 812 (1105)
...+...+..... ...........++.++++|..++++++..+...++...........
T Consensus 95 ~~eal~~l~~~~~---------------------~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~p 153 (206)
T 3mm4_A 95 GKEALRLVTEGLT---------------------QREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTP 153 (206)
T ss_dssp HHHHHHHHHHHHH---------------------HHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHhhcc---------------------cccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCc
Confidence 6555544432100 0000000011346789999999999886655555443322122223
Q ss_pred EEeeccCC-CchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 813 AWVVNHQT-TSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 813 ~~~~~~~~-~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++..... .........+.|.+.++.||+. .+...+..+..
T Consensus 154 iI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 154 IIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp EEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred EEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 33333333 3345556677899999999998 77777776654
No 191
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=89.61 E-value=4.2 Score=37.71 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=76.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+..++...|.... .+.....+...+.. .+..
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~~d 48 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET----------------------------------LKPD 48 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH----------------------------------HCCS
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh----------------------------------cCCC
Confidence 466777788888889999998887765 45554444433322 1346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++. ......+ ++..............+.|...++.||+....+...+..+..+
T Consensus 49 lii~d~~l~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 49 IVIIDVDIPGVNGIQVLETLRK---RQYSGII-IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEETTCSSSCHHHHHHHHHH---TTCCSEE-EEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCChHHHHHHHHh---cCCCCeE-EEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8899999999887544444432 2222233 3333333333445566788999999999999999999887754
No 192
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=89.47 E-value=2.2 Score=40.18 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=78.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...++. .+..
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 52 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR----------------------------------RPYA 52 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------SCCS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh----------------------------------CCCC
Confidence 457788888888899999999988877666665554443322 2346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhH-hhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKT-ELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++++|..+++.++..+.+.++..... ....+. +........... ...+.|.+.++.||+....+...+..+..+.
T Consensus 53 lvi~d~~l~~~~g~~~~~~l~~~~~~-~~~~ii-~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 53 AMTVDLNLPDQDGVSLIRALRRDSRT-RDLAIV-VVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTSGGG-TTCEEE-EECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCccc-CCCCEE-EEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 88999999998875554444432111 122222 222221111222 5566788899999999999999998877643
No 193
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=89.41 E-value=0.24 Score=52.87 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCChhhHhhhhc--------ccc---cCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001298 612 CFEVDDTGCGIDQSKWETVFE--------SFE---QGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKN 672 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe--------~F~---q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~ 672 (1105)
.|+|.|||+||+++++..-+. .|. +.+. ....-|..|+|+.-|-.++ -++.|.|..
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~-d~~~IGqFGvGfySaf~va----dkv~V~Sk~ 153 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYLVA----EKVVVITKH 153 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTC-CGGGGGGGTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccC-CcccccccCcccccccccC----CEEEEEEee
Confidence 478999999999999843221 121 1111 1233567899998764332 345555543
No 194
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=89.37 E-value=0.58 Score=49.58 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=37.1
Q ss_pred EEEEeCCCCCChhh-------HhhhhcccccCCC----CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEE
Q 001298 613 FEVDDTGCGIDQSK-------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQLY 681 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~-------l~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~~ 681 (1105)
++|.|+|.|||.+. .+-+|....-+.. ......|=.|.|++.|..|-+. +.|++.. .|-.+...
T Consensus 74 i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~----l~v~v~r-~g~~~~q~ 148 (226)
T 4emv_A 74 LTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW----LEVEITR-DGAVYKQR 148 (226)
T ss_dssp EEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE----EEEEEEE-TTEEEEEE
T ss_pred EEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc----eEEEEEe-CCcEEEEE
Confidence 89999999999998 7777753322211 1111223468999998877653 3444432 34444444
Q ss_pred E
Q 001298 682 L 682 (1105)
Q Consensus 682 l 682 (1105)
+
T Consensus 149 f 149 (226)
T 4emv_A 149 F 149 (226)
T ss_dssp E
T ss_pred E
Confidence 4
No 195
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=89.08 E-value=3.3 Score=39.86 Aligned_cols=120 Identities=8% Similarity=0.076 Sum_probs=80.6
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...+. ..+..
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~----------------------------------~~~~d 53 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS----------------------------------LTRPD 53 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT----------------------------------TCCCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH----------------------------------hCCCC
Confidence 45778888888899999999998887766655544433221 12457
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++...... ...+++..............+.|...++.||+....+...+..+..+
T Consensus 54 lii~D~~l~~~~g~~~~~~lr~~~~~~--~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 54 LIISDVLMPEMDGYALCRWLKGQPDLR--TIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHSTTTT--TSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCcC--CCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 899999999988755544444322111 12223333333444555667788999999999999999998887654
No 196
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=88.87 E-value=0.83 Score=48.17 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=34.8
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCCccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001298 613 FEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNKMGGEIKVVKKNSPGTLMQL 680 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l--------~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~~g~GT~f~~ 680 (1105)
|+|.|+|.|||.+.. +-+|....-+.. ......|=.|.||+.|..+-+. +.|++.. .|..+..
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~----l~v~v~r-~g~~~~~ 143 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK----LELVIQR-EGKIHRQ 143 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE----EEEEEEE-TTEEEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc----eEEEEEE-CCEEEEE
Confidence 899999999999864 455643221111 1111123378999998887653 3444432 2344444
Q ss_pred EE
Q 001298 681 YL 682 (1105)
Q Consensus 681 ~l 682 (1105)
.+
T Consensus 144 ~f 145 (220)
T 4duh_A 144 IY 145 (220)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 197
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=88.86 E-value=5.2 Score=36.90 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=78.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...+...|..+..+.....+...+.. .+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 52 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST----------------------------------FEPA 52 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------TCCS
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------------------------------cCCC
Confidence 457788888888888999999888877766655544433321 2346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++... ........+..... ........+.|.+.++.||+....+...+.....+
T Consensus 53 lii~d~~l~~~~g~~~~~~l~~~~--~~~~~~ii~~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 53 IMTLDLSMPKLDGLDVIRSLRQNK--VANQPKILVVSGLD-KAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEEESCBTTBCHHHHHHHHHTTT--CSSCCEEEEECCSC-SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCCCHHHHHHHHHhcC--ccCCCeEEEEeCCC-hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 889999999988755444443221 11122223333322 33455667789999999999999999988877653
No 198
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=88.63 E-value=5.4 Score=36.43 Aligned_cols=116 Identities=9% Similarity=0.119 Sum_probs=73.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...++. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK----------------------------------ERPDL 50 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc----------------------------------cCCCE
Confidence 46677777778888888888888766655544433332211 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+.+.++. ......+.++ .............+.|...++.||+....+...+.....
T Consensus 51 vl~D~~l~~~~g~~~~~~l~~---~~~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 51 VLLDMKIPGMDGIEILKRMKV---IDENIRVIIM-TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEESCCTTCCHHHHHHHHHH---HCTTCEEEEE-ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEecCCCCCCHHHHHHHHHH---hCCCCCEEEE-EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 899999998877544333332 2222333333 333333444556677888899999999999988876543
No 199
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=88.60 E-value=3.3 Score=38.71 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=79.8
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...+..+..+.....+...++. .+..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~~d 53 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL----------------------------------HAPD 53 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc----------------------------------cCCC
Confidence 347778888888888889998887776666665554443322 1346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++++|..+.+.++..+.+.++. .... ..+++..............+.|.+.++.||+....+...+..+..+.
T Consensus 54 lvi~d~~l~~~~g~~~~~~l~~---~~~~-~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 54 VIITDIRMPKLGGLEMLDRIKA---GGAK-PYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp EEEECSSCSSSCHHHHHHHHHH---TTCC-CEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCC-CcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 8899999998877554444432 1222 22333333344445556678889999999999999999998876543
No 200
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=88.46 E-value=6.4 Score=36.07 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=74.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...+ ...+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~----------------------------------~~~~~d 49 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA----------------------------------PDVRNG 49 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG----------------------------------GGCCSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH----------------------------------hcCCCC
Confidence 3577788888888888888888777665544333222111 012357
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+++.++..+...++. ......+.. ..............+.|...++.||+....+...+..+..
T Consensus 50 lvi~D~~l~~~~g~~~~~~l~~---~~~~~~ii~-~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 50 VLVTDLRMPDMSGVELLRNLGD---LKINIPSIV-ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEEEECCSTTSCHHHHHHHHHH---TTCCCCEEE-EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHh---cCCCCCEEE-EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 8999999999887544333332 222223333 3333333445566678999999999999999998877654
No 201
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=88.42 E-value=4.7 Score=37.97 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=78.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...+.. ..+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 52 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG---------------------------------GWYPD 52 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCCS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc---------------------------------CCCCC
Confidence 457788888888999999999988877666555444333211 12346
Q ss_pred EEEEEeeccc-cChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++ .++..+.+.++. . ....+..+ .............+.|...++.||+....+...+..+...
T Consensus 53 lvi~D~~l~~~~~g~~~~~~l~~---~-~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 53 LILMDIELGEGMDGVQTALAIQQ---I-SELPVVFL-TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEEESSCSSSCCHHHHHHHHHH---H-CCCCEEEE-ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCCCHHHHHHHHHh---C-CCCCEEEE-ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 8899999986 776544444432 2 22233333 3333333445566778889999999999999988887654
No 202
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=88.08 E-value=6 Score=35.95 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=70.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.+...+...+.. .+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 48 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE----------------------------------NKPDL 48 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46677777778888888888888766555443333222211 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+.+.++..... ....+. +..............+.|...++.||+....+...+..+..
T Consensus 49 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 49 ILMDIQLPEISGLEVTKWLKEDDDL-AHIPVV-AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEESBCSSSBHHHHHHHHHHSTTT-TTSCEE-EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHcCccc-cCCcEE-EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 8999999998875444444321111 112222 23322233334455678899999999999999988877653
No 203
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=87.99 E-value=4.4 Score=37.20 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=75.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...++. .+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST----------------------------------RGYD 49 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 356778888888889999999998877766665554443322 2346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
++++|..+++.++..+.+.++.... .....+..+..... ... ......|.+.++.||+....+...+....
T Consensus 50 lii~D~~l~~~~g~~~~~~l~~~~~-~~~~~ii~~s~~~~-~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 50 AVFIDLNLPDTSGLALVKQLRALPM-EKTSKFVAVSGFAK-NDL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp EEEEESBCSSSBHHHHHHHHHHSCC-SSCCEEEEEECC-C-TTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhhc-cCCCCEEEEECCcc-hhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 8999999999887554444433211 12222333333222 222 44455678889999999999998887654
No 204
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=87.91 E-value=5.1 Score=37.07 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=75.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+...+...|.. +..+.........+. ...+..
T Consensus 7 ~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~---------------------------------~~~~~d 53 (129)
T 3h1g_A 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD---------------------------------ANADTK 53 (129)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH---------------------------------HCTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH---------------------------------hCCCCC
Confidence 4677888888888889999888864 443333322221111 012346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..++++++..+.+.++..... ....+++..............+.|.+.++.||+....+...+..+..
T Consensus 54 lvi~D~~~p~~~g~~~~~~lr~~~~~--~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 54 VLITDWNMPEMNGLDLVKKVRSDSRF--KEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEECSCCSSSCHHHHHHHHHTSTTC--TTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCC--CCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 88899999999885554444432111 12223344444444455566778999999999999999998887664
No 205
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=87.70 E-value=6.8 Score=36.76 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=80.1
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. ...+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--------------------------------~~~~~dl 52 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE--------------------------------NCNSIDV 52 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--------------------------------TTTTCCE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh--------------------------------CCCCCCE
Confidence 46777888888888999999888877766655544433321 1134578
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
+++|..+.+.++..+.+.++. ......+ ++..............+.|...++.||+....+...+..+..+.
T Consensus 53 vi~d~~l~~~~g~~~~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 53 VITDMKMPKLSGMDILREIKK---ITPHMAV-IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EEEESCCSSSCHHHHHHHHHH---HCTTCEE-EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHH---hCCCCeE-EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999887554444432 1222223 33333334444556677889999999999999999988876543
No 206
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=87.64 E-value=6.6 Score=36.73 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=76.8
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.+.....+..+...+...|..+..+...+.+...++ ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~ 52 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK----------------------------------KGFS 52 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------------------------------TCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH----------------------------------hcCC
Confidence 345778888888888899999988887766665544443322 1235
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.++++|..+.+.++..+.+.++... ......+ ++..............+.|...++.||+....+...+..+..
T Consensus 53 dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~pi-i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 53 GVVLLDIMMPGMDGWDTIRAILDNS-LEQGIAI-VMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEEEEESCCSSSCHHHHHHHHHHTT-CCTTEEE-EEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhc-ccCCCCE-EEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 7899999999877654433333211 1112222 333333333334455567888899999999999998887764
No 207
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=87.53 E-value=7.5 Score=35.09 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=70.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+...+...|.. ...+.....+...+.. .+..
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~----------------------------------~~~d 49 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE----------------------------------LKPD 49 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCCS
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh----------------------------------cCCC
Confidence 4667777777788888888888876 3344444333332221 1246
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 853 (1105)
++++|..+++.++..+.+.++. ......+. +..............+.|...++.||+....+...+..+
T Consensus 50 lil~D~~l~~~~g~~~~~~l~~---~~~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 50 IVTMDITMPEMNGIDAIKEIMK---IDPNAKII-VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp EEEEECSCGGGCHHHHHHHHHH---HCTTCCEE-EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHHh---hCCCCeEE-EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 8899999998877544333332 12222333 333333334445566788999999999999988877653
No 208
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=87.11 E-value=7.7 Score=36.07 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=77.3
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
...+++.+.....+..+...+...|..+. .+.....+...+.. .+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~----------------------------------~~ 54 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD----------------------------------LR 54 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh----------------------------------CC
Confidence 34577888888888889999988888776 36555544443322 13
Q ss_pred cEEEEEEeecc-ccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+. +.++..+.+.++.. ....+.++ .............+.|...++.||+....+...+..+..+
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~l~~~----~~~~ii~l-s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAARLAAG----CNLPIIFI-TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHHHHHH----SCCCEEEE-ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHhC----CCCCEEEE-ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 46888999887 67764433333322 22223333 3333334445566788899999999999999998887654
No 209
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=86.96 E-value=6.6 Score=37.03 Aligned_cols=121 Identities=7% Similarity=-0.004 Sum_probs=78.5
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.+.....+..+...+...|..+..+.....+...+.. .+.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~ 53 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK----------------------------------THP 53 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc----------------------------------CCC
Confidence 3457777778888888888888888877766665554443322 134
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+.+.++..+.+.++... ......+.+ ..............+.|...++.||+....+...+..+...
T Consensus 54 dlii~d~~l~~~~g~~~~~~l~~~~-~~~~~pii~-ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 54 HLIITEANMPKISGMDLFNSLKKNP-QTASIPVIA-LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHTST-TTTTSCEEE-EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCHHHHHHHHHcCc-ccCCCCEEE-EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 6889999998887654444433211 111222333 33333344455666788999999999999999988877653
No 210
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=86.82 E-value=8.2 Score=35.78 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=75.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...++..|..+..+.....+...+.. .+..+
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 50 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN----------------------------------EFFNL 50 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777888888888888888888776655554443332211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..++++++..+.+.++. ......+ ++..............+.|...++.||+....+...+..+..+
T Consensus 51 vl~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 51 ALFXIKLPDMEGTELLEKAHK---LRPGMKK-IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EEECSBCSSSBHHHHHHHHHH---HCTTSEE-EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHh---hCCCCcE-EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 899999998877544333332 1222223 3333333334455666789999999999999999988776543
No 211
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=86.82 E-value=9.6 Score=34.46 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=72.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+..++...|..+..+.....+...+.. .+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~----------------------------------~~~dl 49 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN----------------------------------QSVDL 49 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc----------------------------------CCCCE
Confidence 46677777778888888888877766555443333222211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+.+.++. .....+.+ ..............+.|...++.||+....+...+.....
T Consensus 50 vi~d~~l~~~~g~~~~~~l~~----~~~~~ii~-~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 50 ILLDINLPDENGLMLTRALRE----RSTVGIIL-VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEEESCCSSSCHHHHHHHHHT----TCCCEEEE-EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCChHHHHHHHHh----cCCCCEEE-EECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 889999999887544444332 12222333 3333333344555678899999999999999888876653
No 212
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=86.72 E-value=2.7 Score=39.58 Aligned_cols=121 Identities=10% Similarity=0.084 Sum_probs=78.3
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhcc-CC
Q 001298 701 TVVVLATVGSMERMIISQWLRK-KKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI-DP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 778 (1105)
..+++.+.....+..+..++.. .|..+..+.....+...+. . .+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~----------------------------------~~~~ 50 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK----------------------------------DLDS 50 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT----------------------------------TCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh----------------------------------cCCC
Confidence 3577888888888899999998 8887776665443322110 1 34
Q ss_pred cEEEEEEeecc-ccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 779 VYVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 779 ~~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
..++++|..++ +.++..+.+.++... ...... +++..............+.|...++.||+....+...+..+..+.
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~-~~~~~~-ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNS-RTANTP-VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSG-GGTTCC-EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCc-ccCCCC-EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 56888999888 776644444433211 112222 333333344445556677899999999999999999998877643
No 213
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=86.62 E-value=8.9 Score=35.70 Aligned_cols=120 Identities=11% Similarity=0.082 Sum_probs=78.0
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRK-KKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~-~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+...+.. .|.. +..+.....+...++. .+
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~----------------------------------~~ 54 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT----------------------------------VK 54 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH----------------------------------TC
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh----------------------------------cC
Confidence 4577788888888888999988 7877 6666655544433321 23
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+.+.++..+.+.++... . .....+++..............+.|...++.||+....+...+..+..+
T Consensus 55 ~dlii~d~~l~~~~g~~~~~~l~~~~-~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFSICHRIKSTP-A-TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHHTST-T-TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEecccCCCcHHHHHHHHHhCc-c-ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 46889999988877654444333211 1 1122233333333344445666788999999999999999998887654
No 214
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=86.50 E-value=9.4 Score=36.27 Aligned_cols=120 Identities=10% Similarity=0.119 Sum_probs=79.0
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCce--eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhcc
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI 776 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1105)
.+..+++.+.....+..+...+...|.. ...+.+...+...++.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~---------------------------------- 59 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA---------------------------------- 59 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH----------------------------------
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh----------------------------------
Confidence 3556888888888888999999888733 3345544444433322
Q ss_pred CCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 777 ~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.+..++++|..+.+.++..+.+.++. ...... +++..............+.|...++.||+....+...+..+..+
T Consensus 60 ~~~dlii~d~~l~~~~g~~~~~~l~~---~~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDGAQVAAAVRS---YELPTR-VLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HCCSEEEEETTCSSSCHHHHHHHHHH---TTCSCE-EEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHh---cCCCCe-EEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 13468899999998887544444332 122222 33334444444555667889999999999999999999887764
No 215
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=86.50 E-value=6.1 Score=36.88 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=75.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+...++..|.. +..+.....+...+... .....++.
T Consensus 4 ~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~-----------------------------~~~~~~~d 54 (133)
T 2r25_B 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL-----------------------------TSKGENYN 54 (133)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH-----------------------------HHHTCCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHH-----------------------------HhcCCCCC
Confidence 4677788888888888888877753 34444433333322211 01113457
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|+.++++++..+.+.++.. ..... .+.+..............+.|...++.||+....+...+.....
T Consensus 55 lvllD~~mp~~~G~~~~~~lr~~--~~~~~-~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 55 MIFMDVQMPKVDGLLSTKMIRRD--LGYTS-PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHH--SCCCS-CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred EEEEeCCCCCCChHHHHHHHHhh--cCCCC-CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 89999999999875444443321 11122 23333433444445566678999999999999999998877643
No 216
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=86.37 E-value=8.7 Score=35.65 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcC--ceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 702 VVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
.+++.+.....+..+...+...+ ..+..+.....+...++. .+.
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~----------------------------------~~~ 50 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE----------------------------------YNP 50 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh----------------------------------cCC
Confidence 46677777888888888888765 333344433333322211 123
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+++.++..+.+.++. ......+ ++...........+..+.|...++.||+....+...+..+..+
T Consensus 51 dlvilD~~lp~~~g~~~~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 51 NVVILDIEMPGMTGLEVLAEIRK---KHLNIKV-IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp SEEEECSSCSSSCHHHHHHHHHH---TTCSCEE-EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred CEEEEecCCCCCCHHHHHHHHHH---HCCCCcE-EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 68899999999887544333332 1222223 3333333344455666789999999999999999988877643
No 217
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=86.21 E-value=2.2 Score=39.98 Aligned_cols=117 Identities=15% Similarity=0.001 Sum_probs=75.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC-ceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 701 TVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
..+++.+.....+..+..+++..| ..+..+.+...+...+ ...+.
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l----------------------------------~~~~~ 60 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP----------------------------------ADTRP 60 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC----------------------------------TTCCC
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH----------------------------------hccCC
Confidence 457788888888889999999988 7766555443322100 11345
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.++++|..+++.++..+.+.++.. ..... +++..............+.|...++.||+....+...+.....
T Consensus 61 dlvi~D~~l~~~~g~~~~~~l~~~---~~~~~-ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 61 GIVILDLGGGDLLGKPGIVEARAL---WATVP-LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp SEEEEEEETTGGGGSTTHHHHHGG---GTTCC-EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CEEEEeCCCCCchHHHHHHHHHhh---CCCCc-EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 789999999988764433333321 11222 3333333444455566778999999999999999988876543
No 218
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=86.21 E-value=10 Score=34.35 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=72.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE----------------------------------YDINL 50 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 46777777778888888888877766555544333322211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+.+.++. . ....+. +..............+.|.+.++.||+....+...+..+..
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~---~-~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 51 VIMDINLPGKNGLLLARELRE---Q-ANVALM-FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp EEECSSCSSSCHHHHHHHHHH---H-CCCEEE-EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHh---C-CCCcEE-EEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 889999998877544444332 1 222233 33333333344555678889999999999999888876553
No 219
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=86.16 E-value=0.75 Score=43.87 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=71.7
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
..++++++....+..+...++..|..+. .+++.+++...++. .++
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~----------------------------------~~~ 54 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK----------------------------------GQF 54 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH----------------------------------CCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----------------------------------CCC
Confidence 4578888888899999999999998764 45554444433321 356
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLET 852 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~ 852 (1105)
.++++|+.++++++..+.+.++.. ...+++.+...... ...+.|...++.||+....+...+..
T Consensus 55 DlvllDi~mP~~~G~el~~~lr~~------~ipvI~lTa~~~~~---~~~~~g~~~yl~KP~~~~~L~~~l~~ 118 (123)
T 2lpm_A 55 DIAIIDVNLDGEPSYPVADILAER------NVPFIFATGYGSKG---LDTRYSNIPLLTKPFLDSELEAVLVQ 118 (123)
T ss_dssp SEEEECSSSSSCCSHHHHHHHHHT------CCSSCCBCTTCTTS---CCSSSCSCSCBCSSSSHHHHHHHHST
T ss_pred CEEEEecCCCCCCHHHHHHHHHcC------CCCEEEEecCccHH---HHHhCCCCcEEECCCCHHHHHHHHHH
Confidence 789999999999997666655431 11222332222211 22345666789999999998877644
No 220
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=86.16 E-value=8.2 Score=34.94 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=74.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...++. .+..+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 52 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR----------------------------------DRPDL 52 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 46677777778888888888888877666655544433321 12467
Q ss_pred EEEEeecc-ccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+. +.++..+.+.++..... ....+.++ . ...........+.|...++.||+....+...+.....
T Consensus 53 vi~d~~~~~~~~g~~~~~~l~~~~~~-~~~~ii~~-~-~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 53 VVLAVDLSAGQNGYLICGKLKKDDDL-KNVPIVII-G-NPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEESBCGGGCBHHHHHHHHHHSTTT-TTSCEEEE-E-CGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCCCHHHHHHHHhcCccc-cCCCEEEE-e-cCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 88999888 77765444443332111 12223333 3 2333444566778889999999999999988877653
No 221
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=86.00 E-value=7.1 Score=36.00 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=73.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...+. .+..+..+.....+...+.. .+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA----------------------------------HPPD 49 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc----------------------------------CCCC
Confidence 356777777777888888887 66666665554444333221 2356
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++++|..+++.++..+...++...... ...+..+.. ...... ....+.|.+.++.||+....+...+..++.+.
T Consensus 50 lvi~d~~l~~~~g~~~~~~l~~~~~~~-~~pii~~s~-~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 50 VLISDVNMDGMDGYALCGHFRSEPTLK-HIPVIFVSG-YAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHSTTTT-TCCEEEEES-CCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCccC-CCCEEEEeC-CCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 889999999988755444443321111 222233332 222333 56667888899999999999999998887643
No 222
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=85.94 E-value=1.2 Score=51.17 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCChhh--------HhhhhcccccCCC----CCCCCCCCccchHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSK--------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLV 659 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~--------l~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LV 659 (1105)
.|+|.|+|.|||.+. .+-+|....-+.. ...-..|=.|.||+.|..+-
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 389999999999987 5667763221111 11112244799999998774
No 223
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=85.83 E-value=7.2 Score=37.11 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=77.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC--ceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKK--VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+..++...+ ..+..+.....+...+. ..+
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~----------------------------------~~~ 66 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE----------------------------------KES 66 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT----------------------------------TSC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh----------------------------------ccC
Confidence 457788888888888889988776 44555554444333221 123
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+.+.++..+.+.++. ...... +++..............+.|...++.||+....+...+..+..+
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~---~~~~~~-ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRS---EKLETK-VVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---TTCSCE-EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHH---hCCCCe-EEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 468899999998877544444332 122222 33333334444556677889999999999999999999887754
No 224
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=85.79 E-value=2.8 Score=41.98 Aligned_cols=117 Identities=10% Similarity=0.104 Sum_probs=79.5
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.++....+..+...+...|..+..+.+...+...+. ..+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~----------------------------------~~~~ 52 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG----------------------------------AEKF 52 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT----------------------------------TSCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh----------------------------------hCCC
Confidence 346788888888899999999998887766665554433221 1235
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
.++++|..++++++..+.+.++.. .... .+++..............+.|.+.++.||+....+...+..+.
T Consensus 53 dlvl~D~~lp~~~g~~~~~~l~~~---~~~~-~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 53 EFITVXLHLGNDSGLSLIAPLCDL---QPDA-RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp SEEEECSEETTEESHHHHHHHHHH---CTTC-EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CEEEEeccCCCccHHHHHHHHHhc---CCCC-CEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 789999999999885554444331 1222 2344444444455566778899999999999998888775544
No 225
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.73 E-value=8.9 Score=35.92 Aligned_cols=117 Identities=11% Similarity=0.211 Sum_probs=73.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. ....+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~dl 51 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER----------------------------------SKPQL 51 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh----------------------------------cCCCE
Confidence 46667777777778888888777766555544433332221 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+...++. ......+ ++..............+.|...++.||+....+...+..+...
T Consensus 52 vllD~~l~~~~g~~l~~~l~~---~~~~~~i-i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 52 IILDLKLPDMSGEDVLDWINQ---NDIPTSV-IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp EEECSBCSSSBHHHHHHHHHH---TTCCCEE-EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHh---cCCCCCE-EEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 899999998877544333332 1222223 3333333344455666788999999999999999988776543
No 226
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=85.73 E-value=8 Score=35.74 Aligned_cols=126 Identities=11% Similarity=0.051 Sum_probs=77.1
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+...+...|. .+..+.....+...+.... ......+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~---------------------------~~~~~~~ 55 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEG---------------------------EYANASR 55 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCG---------------------------GGGSCCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHccc---------------------------ccccCCC
Confidence 3567788888888889999998887 5555555444433321100 0000134
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+.+.++..+.+.++..... ....+. +..............+.|...++.||+....+...+..+..
T Consensus 56 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~-~~~pii-~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 56 PDLILLXLNLPKKDGREVLAEIKSDPTL-KRIPVV-VLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTG-GGSCEE-EEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCcccHHHHHHHHHcCccc-ccccEE-EEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 5788999999988775444443332111 122233 33333333445566678999999999999999998887654
No 227
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.70 E-value=7 Score=37.70 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred eCCHHHHHHHHHHHHhcCCEEE---EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCC--
Q 001298 956 EDTPLIQIVACKILEKVGATVS---VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMD-- 1030 (1105)
Q Consensus 956 dD~~~~~~~l~~~L~~~g~~v~---~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~md-- 1030 (1105)
|-+..-..++..+|+..||+|. .....++.++.+.+ ..+|+|.+-+.|..-.
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~-----------------------~~~d~v~lS~~~~~~~~~ 70 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE-----------------------TKADAILVSSLYGQGEID 70 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH-----------------------HTCSEEEEEECSSTHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh-----------------------cCCCEEEEEecCcCcHHH
Confidence 4455666788899999999998 34667888887764 2799999998884321
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccC-----C-HHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHA-----M-NADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~-----~-~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
--++.+.+|+. +.++++|++ -+.. + .++...+.++|+|.|..---+..+....+...+
T Consensus 71 ~~~~i~~l~~~----g~~~i~v~v-GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 71 CKGLRQKCDEA----GLEGILLYV-GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTHHHHHHHT----TCTTCEEEE-EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCEEEE-ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 12345566643 223566654 3432 1 122456889999999977677777777776544
No 228
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=85.61 E-value=13 Score=34.38 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=72.8
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 50 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET----------------------------------EKPDL 50 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh----------------------------------cCCCE
Confidence 46677777777888888888877766555444333322211 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+...++. ......+.++..+. .........+.|...++.||+....+...+..+..
T Consensus 51 vl~D~~l~~~~g~~~~~~l~~---~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 51 IVLDVMLPKLDGIEVCKQLRQ---QKLMFPILMLTAKD-EEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp EEEESSCSSSCHHHHHHHHHH---TTCCCCEEEEECTT-CCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHc---CCCCCCEEEEECCC-CHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 889999998877544433332 22223333333332 23334455678889999999999999998887664
No 229
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=85.55 E-value=10 Score=35.37 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=72.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dl 50 (138)
T 3c3m_A 5 TILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA----------------------------------TPPDL 50 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777788888888888888888776655544433332211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+.+.++..... ....+..+... ............|.+.++.||+....+...+..+...
T Consensus 51 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~ls~~-~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 51 VLLDIMMEPMDGWETLERIKTDPAT-RDIPVLMLTAK-PLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEESCCSSSCHHHHHHHHHHSTTT-TTSCEEEEESS-CCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCCHHHHHHHHHcCccc-CCCCEEEEECC-CChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 8999999998875444444321111 12223333322 2222223333345678999999999999988877653
No 230
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=85.54 E-value=11 Score=33.95 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=71.8
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|..+..+.....+...+.. .+..++
T Consensus 3 ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dli 48 (121)
T 2pl1_A 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE----------------------------------HIPDIA 48 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSEE
T ss_pred EEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc----------------------------------cCCCEE
Confidence 4566677777778888888888766655554443332211 234678
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+.+.++ .......+.+ ..............+.|...++.||+....+...+..+..
T Consensus 49 l~D~~l~~~~g~~~~~~l~---~~~~~~~ii~-~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 49 IVDLGLPDEDGLSLIRRWR---SNDVSLPILV-LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp EECSCCSSSCHHHHHHHHH---HTTCCSCEEE-EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHH---hcCCCCCEEE-EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 8999999887754433333 2222222333 3333333444566678899999999999999988877653
No 231
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=85.52 E-value=9.9 Score=36.13 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=80.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+...+...|. .+..+.....+...++.... .......+
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~-------------------------~~~~~~~~ 59 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK-------------------------SGRVSAGR 59 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS-------------------------SSGGGTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc-------------------------ccccccCC
Confidence 3567788888888899999998887 55555555544443321100 00011245
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+++.++..+.+.++..... .... +++..............+.|...++.||+....+...+..+..
T Consensus 60 ~dliilD~~l~~~~g~~~~~~lr~~~~~-~~~p-ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 60 AQLVLLDLNLPDMTGIDILKLVKENPHT-RRSP-VVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp BEEEEECSBCSSSBHHHHHHHHHHSTTT-TTSC-EEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcccc-cCCC-EEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6899999999998875554444432111 1222 2333333344445566778999999999999999998888743
No 232
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=85.42 E-value=2.6 Score=39.53 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=76.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...+...|..+..+.....+... . ...+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~--------------------------------l--~~~~~d 52 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQ--------------------------------Q--ISDDAI 52 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTS--------------------------------C--CCTTEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHH--------------------------------H--hccCCC
Confidence 357778888888888899998888776655543322110 0 013467
Q ss_pred EEEEEeeccc--cChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 781 VVVIDIALLD--LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 781 ~v~id~~l~d--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
++++|..+++ .++..+.+.++. ......+ ++..............+.|...++.||+....+...+..+..+.
T Consensus 53 lvi~D~~l~~~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 53 GMIIEAHLEDKKDSGIELLETLVK---RGFHLPT-IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEEETTGGGBTTHHHHHHHHHHH---TTCCCCE-EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEeCcCCCCCccHHHHHHHHHh---CCCCCCE-EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 8999999988 766444333332 2222233 33333344444556667899999999999999999988876543
No 233
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=85.21 E-value=3.2 Score=45.34 Aligned_cols=115 Identities=12% Similarity=-0.006 Sum_probs=79.7
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
..+++.++....+..+...++..|..+. .+.+..++...+.. .++
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~----------------------------------~~~ 206 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR----------------------------------RTP 206 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------CCC
T ss_pred CcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh----------------------------------CCC
Confidence 3577788889999999999999999888 67766555544332 235
Q ss_pred EEEEEEeecc-ccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALL-DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~-d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|+.++ .+++......++... .. .+++.+... .......+.|.+.++.||+....|...+..++..
T Consensus 207 dlvl~D~~MPd~mdG~e~~~~ir~~~----~~-piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 207 GLVLADIQLADGSSGIDAVKDILGRM----DV-PVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp SEEEEESCCTTSCCTTTTTHHHHHHT----TC-CEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHhcC----CC-CEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 7899999999 588855444444332 22 223333222 2233455678889999999999999999887653
No 234
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=85.19 E-value=7.7 Score=37.02 Aligned_cols=120 Identities=11% Similarity=0.131 Sum_probs=76.6
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
....+++.+.....+..+...+...|..+..+.....+...+. ..+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~ 51 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK----------------------------------GTS 51 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT----------------------------------TSC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----------------------------------cCC
Confidence 3456788888888888999999988887766655444333221 123
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcC-CcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+++.++..+...++. ......+.++... ..........+.| ...++.||+....+...+..+...
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 52 VQLVISDMRMPEMGGEVFLEQVAK---SYPDIERVVISGY-ADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHH---HCTTSEEEEEECG-GGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHH---hCCCCcEEEEecC-CCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 568899999998876544333332 2222333333332 2223334444555 889999999999999988877653
No 235
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=85.17 E-value=9.2 Score=35.76 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=74.1
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 6 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 51 (136)
T 2qzj_A 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS----------------------------------NKYDL 51 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------CCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------cCCCE
Confidence 46777778888888888888877766555444333322211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+.+.++. .. ...+. +..............+.|...++.||+....+...+..+...
T Consensus 52 vllD~~l~~~~g~~l~~~l~~---~~-~~~ii-~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 52 IFLEIILSDGDGWTLCKKIRN---VT-TCPIV-YMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EEEESEETTEEHHHHHHHHHT---TC-CCCEE-EEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHcc---CC-CCCEE-EEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 899999998877544444432 11 22233 333333334445566788999999999999999988776543
No 236
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=85.14 E-value=8.7 Score=35.70 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=75.3
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...+...|..+..+.....+...++. .+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~----------------------------------~~~d 49 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE----------------------------------ENPE 49 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH----------------------------------SCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc----------------------------------CCCC
Confidence 356777888888888888998888777666555444433321 2457
Q ss_pred EEEEEeecc-----ccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALL-----DLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~-----d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+. +.++..+.+.++ .......+.++... ..........+.|...++.||+....+...+..+..
T Consensus 50 lvi~d~~~~~~~~~~~~g~~~~~~l~---~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 50 VVLLDMNFTSGINNGNEGLFWLHEIK---RQYRDLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp EEEEETTTTC-----CCHHHHHHHHH---HHCTTCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEEeCCcCCCCCCCccHHHHHHHHH---hhCcCCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 889998887 666543333332 22222333333332 223344556678899999999999999999888765
Q ss_pred c
Q 001298 856 G 856 (1105)
Q Consensus 856 ~ 856 (1105)
+
T Consensus 126 ~ 126 (140)
T 2qr3_A 126 Q 126 (140)
T ss_dssp C
T ss_pred h
Confidence 4
No 237
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=84.92 E-value=8.5 Score=36.62 Aligned_cols=118 Identities=9% Similarity=0.126 Sum_probs=74.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++.. +..+..+.....+...+.. ..|+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~---------------------------------~~~~d 50 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK---------------------------------SDPFS 50 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH---------------------------------SCCCS
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc---------------------------------CCCCC
Confidence 3567777778788888888865 6666555554443333221 23567
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcC-CcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREG-QNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++. ......+ ++...........+..+.| ...++.||+....+...+..+...
T Consensus 51 lvi~D~~l~~~~g~~~~~~l~~---~~~~~~i-i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 51 VIMVDMRMPGMEGTEVIQKARL---ISPNSVY-LMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEEESCCSSSCHHHHHHHHHH---HCSSCEE-EEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHHh---cCCCcEE-EEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999999999887544444332 2222222 3333222333344555667 888999999999999988887654
No 238
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=84.91 E-value=6.6 Score=36.98 Aligned_cols=121 Identities=9% Similarity=0.012 Sum_probs=78.2
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCce--eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVS--TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1105)
...+++.+.....+..+..++...|.. +..+.....+...+. ..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~----------------------------------~~ 50 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ----------------------------------QA 50 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT----------------------------------TC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh----------------------------------cC
Confidence 345778888888888999999888876 555554444333221 12
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCC-ChhHHHHHHHHHHhc
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 856 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 856 (1105)
+..++++|..+.+.++..+.+.++..... .... +++..............+.|.+.++.||+ ....+...+..+...
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~~lr~~~~~-~~~p-ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 51 KYDLIILDIGLPIANGFEVMSAVRKPGAN-QHTP-IVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp CCSEEEECTTCGGGCHHHHHHHHHSSSTT-TTCC-EEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcccc-cCCC-EEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 35688999999888775544444331111 1222 33333334444555667789999999999 999999988887654
No 239
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=84.65 E-value=5.2 Score=37.82 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=78.3
Q ss_pred CCcEEEEeecChhhHHHHHHHHHhcC-ceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhcc-
Q 001298 699 PNTVVVLATVGSMERMIISQWLRKKK-VSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALI- 776 (1105)
Q Consensus 699 ~~~~v~~~~~~~~~r~~~~~~~~~~g-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 776 (1105)
++..+++.+.....+..+..++...| ..+..+......... .. ..
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~--------------------------------~~-~~~ 65 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQ--------------------------------RT-DGL 65 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTT--------------------------------CH-HHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHH--------------------------------HH-hcC
Confidence 35678888999999999999999888 666655443321110 00 01
Q ss_pred CCcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 777 DPVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 777 ~~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.+..++++|..+++.++..+.+.++. ..... .+++..............+.|...++.||+....+...+..+..+
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~-~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSR---LHPGL-TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHH---HCTTC-EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHH---hCCCC-cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 34578899999988766443333322 22222 233444444444555667788899999999999999998887654
No 240
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=84.43 E-value=12 Score=33.49 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=70.4
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|..+..+.........+.. .+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dlv 49 (120)
T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA----------------------------------EQPDII 49 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------HCCSEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh----------------------------------CCCCEE
Confidence 5666777777778888888777766555443333222211 134688
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+.+.++. . ....+.++ .............+.|...++.||+....+...+..+..
T Consensus 50 l~D~~l~~~~g~~~~~~l~~---~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 50 ILDLMLPEIDGLEVAKTIRK---T-SSVPILML-SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EECSSCSSSCHHHHHHHHHH---H-CCCCEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHh---C-CCCCEEEE-ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 89999998877544444432 1 22223333 333333344455678889999999999999888876543
No 241
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=84.43 E-value=5.4 Score=35.53 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=69.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~----------------------------------~~~dl 48 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL----------------------------------LQPIV 48 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh----------------------------------cCCCE
Confidence 46677777778888888888888877666655444433321 13467
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHH
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 853 (1105)
+++|..+.+.++..+.+.++..... ....+.++...... . ...+.|...++.||+....+...+...
T Consensus 49 ii~d~~~~~~~~~~~~~~l~~~~~~-~~~~ii~~~~~~~~-~---~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 49 ILMAWPPPDQSCLLLLQHLREHQAD-PHPPLVLFLGEPPV-D---PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp EEEECSTTCCTHHHHHHHHHHTCCC-SSCCCEEEESSCCS-S---HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred EEEecCCCCCCHHHHHHHHHhcccc-CCCCEEEEeCCCCc-h---hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 8889888877664443333322111 12223333332222 2 556678888999999999888877554
No 242
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=84.26 E-value=9.9 Score=34.02 Aligned_cols=112 Identities=9% Similarity=0.064 Sum_probs=69.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 48 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS----------------------------------GNYDL 48 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 35667777778888888888888776655544443332211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHH
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 853 (1105)
+++|..+++.++..+.+.++. ......+.++..+... . ....+.|...++.||+....+...+..+
T Consensus 49 vl~D~~l~~~~g~~~~~~l~~---~~~~~~ii~~s~~~~~-~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 49 VILDIEMPGISGLEVAGEIRK---KKKDAKIILLTAYSHY-R--SDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp EEECSCCSSSCHHHHHHHHHH---HCTTCCEEEEESCGGG-G--GCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHc---cCCCCeEEEEECCcch-H--HHHHhccccceEECCCCHHHHHHHHHHH
Confidence 899999998877544444332 2222333333332221 1 4455678888999999999888877654
No 243
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=84.09 E-value=5.9 Score=44.89 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=80.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.++....+..+..++...|..+..+.+...+...+.. .++.+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~----------------------------------~~~Dl 47 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE----------------------------------LFFPV 47 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------BCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 36777888888899999999988877666655544433322 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|+.++++++..+.+.++.. .... .+++..............+.|...++.||+....+...+..+...
T Consensus 48 vllDi~mP~~dG~ell~~lr~~---~~~~-pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 48 IVLDVWMPDGDGVNFIDFIKEN---SPDS-VVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp EEEESEETTEETTTHHHHHHHH---CTTC-EEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhh---CCCC-eEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999885444443321 1222 334444444445556667789999999999999999988877654
No 244
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=83.47 E-value=11 Score=34.39 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=71.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc-eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+...+...|. ....+.....+...+. ..+..
T Consensus 6 ~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~----------------------------------~~~~d 51 (128)
T 1jbe_A 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ----------------------------------AGGYG 51 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT----------------------------------TCCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH----------------------------------hcCCC
Confidence 466777777778888888887776 3444443333222110 12346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+++.++..+.+.++.... .....+++..............+.|...++.||+....+...+..+..
T Consensus 52 lvi~D~~l~~~~g~~l~~~l~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 52 FVISDWNMPNMDGLELLKTIRAXXA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEEEESCCSSSCHHHHHHHHHC--C--CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhcc--cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 8889999999887544444432111 111222333333334444566678899999999999999988877653
No 245
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=82.84 E-value=5.5 Score=42.78 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=65.5
Q ss_pred HHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHHHH
Q 001298 965 ACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-----YEATIE 1037 (1105)
Q Consensus 965 l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~ 1037 (1105)
..+.|.+.||.|. +..|...|-.+.+ . .++.| |++-.|.-.| .++++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~-~-----------------------G~~aV-mPlg~pIGsG~Gi~~~~~L~~ 170 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKRLAA-L-----------------------GTATV-MPLAAPIGSGWGVRTRALLEL 170 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHHHHH-H-----------------------TCSCB-EEBSSSTTTCCCSTTHHHHHH
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHHHHh-c-----------------------CCCEE-EecCccCcCCcccCCHHHHHH
Confidence 4455667799977 4456644444332 2 46766 7777765555 456788
Q ss_pred HHccccccCCCC-cceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHH
Q 001298 1038 IRKSESEHGARN-IPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILR 1091 (1105)
Q Consensus 1038 IR~~~~~~~~~~-ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~ 1091 (1105)
|++.. .+ +|||+=-+-..++|...+++.|+|+.+. |--++..+..++..
T Consensus 171 i~~~~-----~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~ 225 (268)
T 2htm_A 171 FAREK-----ASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRL 225 (268)
T ss_dssp HHHTT-----TTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHH
T ss_pred HHHhc-----CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 88631 34 8999877778999999999999999885 53445555555544
No 246
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=82.53 E-value=1.8 Score=50.01 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCChhhHh--------hhhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001298 612 CFEVDDTGCGIDQSKWE--------TVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~--------~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 661 (1105)
.++|.|+|.|||.+..+ -||....-+.. +.....|=.|.|.+.|..|-+.
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~ 160 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 160 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce
Confidence 38899999999988643 36654332211 1111224479999999887654
No 247
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=82.39 E-value=15 Score=34.29 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=78.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+..++...|. .+..+.....+...+........ .....+
T Consensus 7 ~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~------------------------~~~~~~ 62 (149)
T 1k66_A 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCN------------------------PDIAPR 62 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSC------------------------GGGCCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccC------------------------cccCCC
Confidence 4577888888888889999998887 55555555544443321000000 000034
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+.+.++..+.+.++..... ....+.. ..............+.|...++.||+....+...+..+..
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~-~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVL-KKIPVVI-MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTG-GGSCEEE-EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCccc-CCCeEEE-EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5788999999988775444444332111 2222333 3333333445566678899999999999999998887754
No 248
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=82.17 E-value=2 Score=44.47 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.7
Q ss_pred EEEEEeCCCCCChh
Q 001298 612 CFEVDDTGCGIDQS 625 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e 625 (1105)
.++|.|+|.|||.+
T Consensus 64 ~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 64 WIKVTDNGRGIPVD 77 (198)
T ss_dssp EEEEEECSSCCCCS
T ss_pred eEEEEECCCCcccc
Confidence 48999999999987
No 249
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=82.14 E-value=7.4 Score=41.09 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC------CCCCCHHHHH
Q 001298 963 IVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEAT 1035 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~------MP~mdG~e~~ 1035 (1105)
.-+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...+++++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~li 174 (229)
T 3q58_A 119 DSLLTRIRLHGLLAMADCSTVNEGISCHQK------------------------GIEFIGTTLSGYTGPITPVEPDLAMV 174 (229)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHT------------------------TCSEEECTTTTSSSSCCCSSCCHHHH
T ss_pred HHHHHHHHHCCCEEEEecCCHHHHHHHHhC------------------------CCCEEEecCccCCCCCcCCCCCHHHH
Confidence 334444566687654 46788888776642 5788853211 2334468999
Q ss_pred HHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1036 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1036 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 175 ~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 175 TQLSHA-------GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp HHHHTT-------TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHc-------CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999852 48999999999999999999999999986
No 250
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=82.07 E-value=13 Score=35.23 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=75.4
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRK-KKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~-~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+..++.. .|.... .+.....+...+.. .+
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~----------------------------------~~ 51 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE----------------------------------TT 51 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT----------------------------------TC
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc----------------------------------CC
Confidence 4577778888888888888887 677665 45544443332211 23
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+.+.++..+.+.++. ......+.+ ..............+.|...++.||+....+...+..+..+
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~l~~---~~~~~~ii~-ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEATRHIRQ---WDGAARILI-FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHH---HCTTCCEEE-EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHH---hCCCCeEEE-EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 468889999888776444333332 222222333 33333344455666789999999999999999998877653
No 251
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=82.04 E-value=8.6 Score=38.83 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=75.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...+...|..+..+.....+...+ ...+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~----------------------------------~~~~~d 50 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR----------------------------------RPEQHG 50 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC----------------------------------CTTSCE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh----------------------------------hccCCC
Confidence 3577788888888888899988887766554433322111 012457
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+.+.++. ......+.++..+ ..........+.|.+.++.||+....+...+..+..+
T Consensus 51 lvl~D~~lp~~~g~~~~~~l~~---~~~~~~ii~ls~~-~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 51 CLVLDMRMPGMSGIELQEQLTA---ISDGIPIVFITAH-GDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEEEESCCSSSCHHHHHHHHHH---TTCCCCEEEEESC-TTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCEEEEeCC-CCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 8999999999887544444332 2222333333333 3333444556688899999999999999888776543
No 252
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=81.86 E-value=11 Score=35.29 Aligned_cols=117 Identities=11% Similarity=0.126 Sum_probs=74.3
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...|..+..+.....+...+. ..+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------------------------------~~~~d 50 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR----------------------------------REKID 50 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT----------------------------------TSCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh----------------------------------ccCCC
Confidence 35677788888888899999988887766655444333221 12346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|. +.+.++..+-+.+ ........+. +..............+.|...++.||+....+...+..+..+
T Consensus 51 lvi~d~-~~~~~g~~~~~~l---~~~~~~~pii-~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 51 LVFVDV-FEGEESLNLIRRI---REEFPDTKVA-VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEEC-TTTHHHHHHHHHH---HHHCTTCEEE-EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEEeC-CCCCcHHHHHHHH---HHHCCCCCEE-EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 888898 7765543322222 2222223333 333333344455666788889999999999999998887654
No 253
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=81.76 E-value=11 Score=34.43 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=72.0
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc-eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.+++.+.....+..+...+...|. .+..+...+.+...+. ..+..
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~----------------------------------~~~~d 53 (129)
T 1p6q_A 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA----------------------------------QNPHH 53 (129)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH----------------------------------TSCCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH----------------------------------cCCCC
Confidence 467777888888888888887776 4444444333322221 12346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+++.++..+...++.... .....+.+..............+.|...++.||+....+...+..+..
T Consensus 54 lvl~D~~l~~~~g~~~~~~l~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 54 LVISDFNMPKMDGLGLLQAVRANPA--TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEEECSSSCSSCHHHHHHHHTTCTT--STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCcc--ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 8889999999887544444432111 112222333333333344556677888999999999999988876643
No 254
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=81.68 E-value=17 Score=32.58 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=69.6
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.+.....+..+...+...|..+..+.........+. ..+..++
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------------------------------~~~~dlv 49 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA----------------------------------TRKPDLI 49 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------------------------------HHCCSEE
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh----------------------------------cCCCCEE
Confidence 556677777777888888877766555443332221111 1134688
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..+++.++..+.+.++. . ....+.++ .............+.|...++.||+....+...+..+..
T Consensus 50 i~D~~l~~~~g~~~~~~l~~---~-~~~~ii~~-s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 50 ILDLGLPDGDGIEFIRDLRQ---W-SAVPVIVL-SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp EEESEETTEEHHHHHHHHHT---T-CCCCEEEE-ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHh---C-CCCcEEEE-ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 89999998876544343331 1 22223333 333333344556678889999999999999988877654
No 255
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=81.60 E-value=18 Score=33.07 Aligned_cols=117 Identities=11% Similarity=0.173 Sum_probs=71.3
Q ss_pred EEEEeecChhhHHHHHHHHHhc-Cceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 702 VVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
.+++.+.....+..+..++... |.... .+.....+...+.. .+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~----------------------------------~~~ 49 (130)
T 1dz3_A 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE----------------------------------KRP 49 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc----------------------------------CCC
Confidence 4566777777788888888776 65543 34433333322211 123
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.++++|..+++.++..+.+.++.. ......+.+ ..............+.|...++.||+....+...+..+..
T Consensus 50 dlvllD~~l~~~~g~~~~~~l~~~--~~~~~~ii~-ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 50 DILLLDIIMPHLDGLAVLERIRAG--FEHQPNVIM-LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHH--CSSCCEEEE-EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHhc--CCCCCcEEE-EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 688999999998875444433321 112222333 3333333445566678899999999999999998887654
No 256
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=81.49 E-value=0.74 Score=49.37 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCChhhHhhhhcc--------c---ccCCCCCCCCCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001298 612 CFEVDDTGCGIDQSKWETVFES--------F---EQGDPSTTRKHGGTGLGLSIVRTLVNKMGGEIKVVKK 671 (1105)
Q Consensus 612 ~~~V~DtG~GI~~e~l~~IFe~--------F---~q~~~s~~~~~~GtGLGLaIvk~LVe~~gG~I~v~S~ 671 (1105)
.|+|.|||+||+++++..-+-. | ++........-|-.|+|+.-|-.+ +-++.|.|+
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV----AdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV----SNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT----EEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc----CCEEEEEEc
Confidence 4789999999999999865522 2 111111122346789999875432 345666665
No 257
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=81.21 E-value=12 Score=38.42 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=76.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...+...|..+..+.+...+...+.. .+..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~d 53 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE----------------------------------NRPD 53 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh----------------------------------CCCC
Confidence 357778888888888888888888776665554443332211 2346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+++.++..+...++. ......+.++.. ...........+.|.+.++.||+....+...+..+..+
T Consensus 54 lvllD~~l~~~~g~~~~~~l~~---~~~~~~ii~lt~-~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 54 AIVLDINMPVLDGVSVVTALRA---MDNDVPVCVLSA-RSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEEEESSCSSSCHHHHHHHHHH---TTCCCCEEEEEC-CCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---cCCCCCEEEEEc-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 8899999999877544433332 122223333332 23333344556788899999999999999998887654
No 258
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=81.03 E-value=13 Score=38.53 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=76.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.++....+..+...+...|..+..+.+...+...+.. .+..+
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dl 52 (238)
T 2gwr_A 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE----------------------------------LRPDL 52 (238)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------CCCCE
Confidence 57778888888888889988888776666555444433321 12468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+...++.. . ...+..+.. ...........+.|.+.++.||+....+...+..+..+
T Consensus 53 vilD~~l~~~~g~~~~~~lr~~---~-~~~ii~lt~-~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 53 VLLDLMLPGMNGIDVCRVLRAD---S-GVPIVMLTA-KTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEESSCSSSCHHHHHHHHHTT---C-CCCEEEEEE-TTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhC---C-CCcEEEEeC-CCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 8999999998875444444321 2 222333333 23333445566788999999999999999988877653
No 259
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=80.99 E-value=22 Score=33.02 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=46.7
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..++++++..+...++. ......+.++..+.........+...|...++.||+....+...+..+..
T Consensus 44 ~~dlvl~D~~lp~~~g~~~~~~l~~---~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 44 WVQVIICDQRMPGRTGVDFLTEVRE---RWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp CEEEEEEESCCSSSCHHHHHHHHHH---HCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHH---hCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 4578999999999887544333332 22223333343333333333333445688899999999999988877654
No 260
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=80.79 E-value=10 Score=35.49 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=70.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|.....+.....+...+.. .+..+
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~----------------------------------~~~dl 57 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN----------------------------------RQFDV 57 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 57778888888888888888777655555443333322211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhh--ccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFH--RKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+.+.++...... ....+..+... ..... ..+.|.+.++.||+....+...+..+..+
T Consensus 58 vllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~-~~~~~---~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 58 IIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITAD-TIDDD---RPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESS-CCSCC---CCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCc-cchhH---HHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 89999999988755444444322111 11222222222 11111 12567788999999999999998887653
No 261
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.56 E-value=7.4 Score=37.18 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+...+...|..+..+.+...+...+ ...+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l----------------------------------~~~~~d 49 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL----------------------------------SADFAG 49 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC----------------------------------CTTCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH----------------------------------HhCCCC
Confidence 3467777888888888889988887766555443322111 012346
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|..+.+.++..+.+.++. ......++++.. ...........+.|...++.||+....+...+..+...
T Consensus 50 liild~~l~~~~g~~~~~~l~~---~~~~~pii~ls~-~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 50 IVISDIRMPGMDGLALFRKILA---LDPDLPMILVTG-HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEEEESCCSSSCHHHHHHHHHH---HCTTSCEEEEEC-GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEEEC-CCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 8899999988776544443332 122233333332 22233445566788999999999999999988877654
No 262
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=79.80 E-value=2.5 Score=48.61 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=25.7
Q ss_pred EEEEeCCCCCChhhH--------hhhhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSKW--------ETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~l--------~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 661 (1105)
|+|.|+|.|||.+.. +-+|....-+.. ......|=.|.|++.|..|-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999873 456633322211 1111123369999999887644
No 263
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=79.79 E-value=13 Score=37.83 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.++....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 49 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN----------------------------------EPFDV 49 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH----------------------------------SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc----------------------------------CCCCE
Confidence 46677778888888888888888776655544433322211 23468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+...++. ......+. +..............+.|.+.++.||+....+...+..+..+
T Consensus 50 vllD~~l~~~~g~~~~~~lr~---~~~~~~ii-~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 50 VILDIMLPVHDGWEILKSMRE---SGVNTPVL-MLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp EEEESCCSSSCHHHHHHHHHH---TTCCCCEE-EEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cCCCCCEE-EEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999999877544333332 12222232 333333333445566788999999999999999998887654
No 264
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=79.63 E-value=11 Score=39.81 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=79.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...+...|..+..+.+...+...+.. .+..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~D 83 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE----------------------------------DHPD 83 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc----------------------------------CCCC
Confidence 467888888888888889998888766666554444332221 2347
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
++++|+.+++.++..+...++. . ... .+++..............+.|.+.++.||+....+...+..+..+
T Consensus 84 lvllD~~lp~~~G~~l~~~lr~---~-~~~-~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 84 LILLDLGLPDFDGGDVVQRLRK---N-SAL-PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp EEEEECCSCHHHHHHHHHHHHT---T-CCC-CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEEEcCCCCCCCHHHHHHHHHc---C-CCC-CEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 8999999998776444444332 1 122 233344444444555667789999999999999999999887754
No 265
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=78.19 E-value=13 Score=34.71 Aligned_cols=119 Identities=11% Similarity=0.190 Sum_probs=67.4
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+..++... ..+..+.....+...+.. .+..+
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~----------------------------------~~~dl 49 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH----------------------------------HHPDL 49 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH----------------------------------HCCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc----------------------------------CCCCE
Confidence 5677778888888888888776 555555544444333221 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhcc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRGK 857 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~~ 857 (1105)
+++|..+++.++..+.+.++..... ....+. +..............+.|...++.||+....+...+..+..+.
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 50 VILDMDIIGENSPNLCLKLKRSKGL-KNVPLI-LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EEEETTC------CHHHHHHTSTTC-TTCCEE-EEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHcCccc-CCCCEE-EEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 8999988887764443333322111 122222 2222222333445567888999999999999999988876543
No 266
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=78.12 E-value=14 Score=37.15 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=76.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
..+++.+.....+..+...+...|..+. .+.....+...+.. .+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~----------------------------------~~~ 59 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL----------------------------------HKP 59 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----------------------------------cCC
Confidence 4678888888888899999988887765 55554444333221 134
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+++.++..+...++.. ... .+.++ .............+.|...++.||+....+...+..+...
T Consensus 60 dlvi~D~~~p~~~g~~~~~~l~~~---~~~-pii~l-t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 60 DLVIMDVKMPRRDGIDAASEIASK---RIA-PIVVL-TAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp SEEEEESSCSSSCHHHHHHHHHHT---TCS-CEEEE-EEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCChHHHHHHHHhc---CCC-CEEEE-ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 688999999998875544444321 112 22222 2222233445566788899999999999999988876643
No 267
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=77.09 E-value=13 Score=39.30 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC------CCCCCHHHHH
Q 001298 963 IVACKILEKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ------MPKMDGYEAT 1035 (1105)
Q Consensus 963 ~~l~~~L~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~------MP~mdG~e~~ 1035 (1105)
.-+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...+++++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~~------------------------Gad~Ig~~~~g~t~~~~~~~~~~~~i 174 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQRL------------------------GADIIGTTMSGYTTPDTPEEPDLPLV 174 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHHHT------------------------TCSEEECTTTTSSSSSCCSSCCHHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHhC------------------------CCCEEEEcCccCCCCCCCCCCCHHHH
Confidence 334445566677654 46788888776642 5788753211 1233468999
Q ss_pred HHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1036 IEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1036 ~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+++++. ++|||+-.+-.+.++..+++++|+|+++.
T Consensus 175 ~~l~~~-------~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 175 KALHDA-------GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHHHHT-------TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhc-------CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999863 48999999999999999999999999986
No 268
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=76.92 E-value=23 Score=35.77 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=74.5
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC-cee-eecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKK-VST-LETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g-~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.++....+..+..++...+ ..+ ..+.....+...+.. .+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~----------------------------------~~ 51 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES----------------------------------LD 51 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh----------------------------------cC
Confidence 356777888888888888888764 554 344444333332221 13
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+++.++..+...++. ......+ ++..............+.|.+.++.||+....+...+..+..+
T Consensus 52 ~dlvllD~~lp~~~g~~~~~~lr~---~~~~~~i-i~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 52 PDLILLDLNMPGMNGLETLDKLRE---KSLSGRI-VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp CSEEEEETTSTTSCHHHHHHHHHH---SCCCSEE-EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHH---hCCCCcE-EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 468899999999887544443332 1122222 3333333344455566789999999999999999998887764
No 269
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=75.78 E-value=31 Score=31.95 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=75.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 702 VVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
.+++.+.....+..+...+...|. .+..+.....+...++... .....+.
T Consensus 9 ~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~----------------------------~~~~~~~ 60 (143)
T 2qvg_A 9 DILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN----------------------------KENKIHP 60 (143)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT----------------------------TCCCCCC
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcc----------------------------cccCCCC
Confidence 467777888888888888888776 5555555444443332100 0001345
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
.++++|..+.+.++..+.+.++..... .... +++..............+.|...++.||+....+...+....
T Consensus 61 dlii~D~~l~~~~g~~~~~~l~~~~~~-~~~~-ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 61 KLILLDINIPKMNGIEFLKELRDDSSF-TDIE-VFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp SEEEEETTCTTSCHHHHHHHHTTSGGG-TTCE-EEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHcCccc-cCCc-EEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 788999999888765444444332111 1222 233333333445566677889999999999999988876543
No 270
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=75.27 E-value=15 Score=34.08 Aligned_cols=117 Identities=10% Similarity=0.058 Sum_probs=69.9
Q ss_pred CCCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccC
Q 001298 698 FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777 (1105)
Q Consensus 698 ~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1105)
.+...+++.+.....+..+...+...|..+..+.....+...++ . ..
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~--------------------------------~-~~ 59 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS--------------------------------Q-LS 59 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG--------------------------------G-GG
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH--------------------------------h-CC
Confidence 34567888888888888899999888876665554433322110 0 02
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEee-ccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVV-NHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..+.+.++..+.+.++. ......+.++. ....... ...+ ...++.||+....+...+.....
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~l~~---~~~~~~ii~ls~~~~~~~~-~~~~----~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLSIFSLLDIVKE---QTKQPSVLILTTGRHELIE-SSEH----NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCSEEEEETTCTTSCHHHHHHHHTT---SSSCCEEEEEESCC--CCC-CSSS----CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---hCCCCCEEEEECCCCCHHH-HHHH----HHheeeCCCCHHHHHHHHHHHHH
Confidence 3468889999988876544444332 22223333333 2222222 1111 66789999999999988877654
No 271
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=74.67 E-value=49 Score=29.91 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=71.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
...+++.+.....+..+...+...|..+..+.....+...+.. ..+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---------------------------------~~~~ 51 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS---------------------------------GAAI 51 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT---------------------------------TCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc---------------------------------CCCC
Confidence 3457778888888888888998888777665554443332211 0134
Q ss_pred EEEEEEeeccc-cChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLD-LSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+.+ .++..+.+.++. ......+.++.......... ...+.| .++.||+....+...+..+..+
T Consensus 52 dlvi~d~~l~~~~~g~~~~~~l~~---~~~~~~ii~~s~~~~~~~~~-~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 52 DGVVTDIRFCQPPDGWQVARVARE---IDPNMPIVYISGHAALEWAS-NGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp CEEEEESCCSSSSCHHHHHHHHHH---HCTTCCEEEEESSCCTTHHH-HSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEeeeCCCCCCHHHHHHHHHh---cCCCCCEEEEeCCccHHHHH-hhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 68889999987 776443333332 22233344443333332222 222223 5899999999999998887654
No 272
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=74.54 E-value=20 Score=40.70 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=76.0
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.++....+..+..++...|..+..+.....+...+.. .+..++
T Consensus 3 ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~----------------------------------~~~Dlv 48 (387)
T 1ny5_A 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE----------------------------------KHFNVV 48 (387)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH----------------------------------SCCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh----------------------------------CCCCEE
Confidence 5667777778888888888888777666655544433321 234789
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++|..++++++..+-+.++. ...... +++...........+..+.|...++.||+....+...+..+..
T Consensus 49 llD~~mp~~dG~ell~~lr~---~~~~~p-vIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 49 LLDLLLPDVNGLEILKWIKE---RSPETE-VIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEESBCSSSBHHHHHHHHHH---HCTTSE-EEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHh---hCCCCc-EEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 99999999887544333332 122222 3333333444455566778999999999999999888776654
No 273
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=73.82 E-value=29 Score=32.69 Aligned_cols=126 Identities=8% Similarity=0.045 Sum_probs=74.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCc--eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKV--STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+...++..|. .+..+.....+...++... .......
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~---------------------------~~~~~~~ 61 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG---------------------------EYENSPR 61 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG---------------------------GGTTCCC
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc---------------------------ccccCCC
Confidence 4577788888888888888887765 4444444333322221000 0000123
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..++++++..+.+.++..... ....+ ++..............+.|...++.||+....+...+..+..
T Consensus 62 ~dlillD~~lp~~~g~~l~~~l~~~~~~-~~~pi-iils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAEIKQNPDL-KRIPV-VVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHCTTT-TTSCE-EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhCcCc-CCCeE-EEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4789999999998875444444321111 12222 233333333344555678899999999999999988877653
No 274
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=73.29 E-value=16 Score=34.54 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=66.6
Q ss_pred EEEEeecChhhHHHHHHHHHhc-Cc-eeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 702 VVVLATVGSMERMIISQWLRKK-KV-STLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~-g~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
.+++.+.....+..+...+... |. .+..+.....+...+.. ..+.
T Consensus 5 ~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~---------------------------------~~~~ 51 (154)
T 2qsj_A 5 VVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA---------------------------------DNTV 51 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT---------------------------------TCCC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc---------------------------------cCCC
Confidence 4667777777888888888876 65 44445544443333221 0234
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+.+.++..+.+.++. ......+. +..............+.|...++.||+....+...+..+..+
T Consensus 52 dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii-~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 52 DLILLDVNLPDAEAIDGLVRLKR---FDPSNAVA-LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp SEEEECC------CHHHHHHHHH---HCTTSEEE-EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCchHHHHHHHHH---hCCCCeEE-EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 68888988888766443333322 22222333 333333334455666788888999999999999998887654
No 275
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=72.43 E-value=42 Score=32.31 Aligned_cols=105 Identities=15% Similarity=0.093 Sum_probs=62.9
Q ss_pred cEEEEeecChhhHHHHHHHHHhcC-ce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKKK-VS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g-~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+..++...+ .. ...+.....+...+.. .+
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------------------~~ 71 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE----------------------------------LK 71 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc----------------------------------CC
Confidence 457888888888888888888764 22 2234444333332221 13
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCC-chhhHhhhhcCCcEEEecCCCh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTT-SPIKTELSREGQNIVVTKPLYK 843 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kP~~~ 843 (1105)
..++++|..+.+.++..+.+.++. ... ..+.++...... ........+.|.+.++.||+..
T Consensus 72 ~dlvilD~~l~~~~g~~l~~~lr~---~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~ 133 (164)
T 3t8y_A 72 PDVITMDIEMPNLNGIEALKLIMK---KAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGS 133 (164)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHH---HSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---cCC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCH
Confidence 468899999999887554444432 122 223333332222 2244466778999999999994
No 276
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=72.14 E-value=47 Score=30.65 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=71.2
Q ss_pred cEEEEeecChhhHHHHHHHHHhc-Cceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.+.....+..+...+... +.... .+.+...+...+.. .+
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~----------------------------------~~ 55 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH----------------------------------NK 55 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH----------------------------------CC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------------------------------CC
Confidence 35677788888888888888775 55432 33433333222211 23
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
..++++|..+.+.++..+.+.++. ......+.++... . .......+.|...++.||+....+...+..+...
T Consensus 56 ~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~~ii~~s~~-~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 56 VDAIFLDINIPSLDGVLLAQNISQ---FAHKPFIVFITAW-K--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHTT---STTCCEEEEEESC-C--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHc---cCCCceEEEEeCC-H--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 468899999988876544444432 2222223333322 2 2334556788899999999999999988877654
No 277
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=72.10 E-value=25 Score=32.87 Aligned_cols=74 Identities=9% Similarity=0.156 Sum_probs=43.7
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+..++++|..+++.++..+.+.++. ......+.++ .............+.|...++.||+....+...+..+..
T Consensus 49 ~~dlvllD~~lp~~~g~~l~~~l~~---~~~~~~ii~l-s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELVDNILK---LYPDCSVIFM-SGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHH---HCTTCEEEEE-CCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh---hCCCCcEEEE-eCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3578999999999887544443332 2222233333 332333334455567888999999999999988877654
No 278
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=71.73 E-value=56 Score=29.93 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCCcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccC
Q 001298 698 FPNTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777 (1105)
Q Consensus 698 ~~~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1105)
..+..+++.+.....+..+...+...|..+..+.....+...+...
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~---------------------------------- 61 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR---------------------------------- 61 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS----------------------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC----------------------------------
Confidence 3456788889999889999999998888777666655544433221
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhc-cceeEEeeccCCCchhhHhhhhcCCcEEEecCC-ChhHHHHHHHHHHh
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHR-KAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVR 855 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~ 855 (1105)
+..+++ +.+.++..+.+.++ .. . ...+++ ..............+.|...++.||+ ....+...+..+..
T Consensus 62 ~~dlvi----~~~~~g~~~~~~l~---~~-~~~~~ii~-ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 62 NYDLVM----VSDKNALSFVSRIK---EK-HSSIVVLV-SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp CCSEEE----ECSTTHHHHHHHHH---HH-STTSEEEE-EESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCCEEE----EcCccHHHHHHHHH---hc-CCCccEEE-EeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 122333 55555533333332 22 2 223333 33333344555667788999999999 99999988877654
No 279
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=71.21 E-value=17 Score=32.90 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=70.2
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...|..+..+.....+... + ...+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~----~------------------------------~~~~~dl 49 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQ----L------------------------------NEPWPDL 49 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTT----C------------------------------SSSCCSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHH----H------------------------------hccCCCE
Confidence 46667777777888888888877765554433222110 0 0123468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
+++|..+++.++..+...++..... ....+.++ .............+.|...++.||+....+...+..+..
T Consensus 50 vi~D~~l~~~~g~~~~~~l~~~~~~-~~~~ii~~-s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 50 ILLAWMLPGGSGIQFIKHLRRESMT-RDIPVVML-TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp EEEESEETTEEHHHHHHHHHTSTTT-TTSCEEEE-EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHhCccc-CCCCEEEE-eCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8899999988764443333321111 12223333 222222334455567888999999999999988877654
No 280
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=71.12 E-value=20 Score=33.54 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=66.7
Q ss_pred CcEEEEeecChhhHHHHHHHHHhc-Cceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccC
Q 001298 700 NTVVVLATVGSMERMIISQWLRKK-KVSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~-g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1105)
...+++.+.....+..+..+++.. |.... .+.....+...+.. ..
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~---------------------------------~~ 59 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA---------------------------------QP 59 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH---------------------------------CT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc---------------------------------CC
Confidence 456888888888899999999887 66643 45554444333221 11
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeec-cCCCchhhHhhhhcCCcEEEecCCChhHH
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVN-HQTTSPIKTELSREGQNIVVTKPLYKGKM 846 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kP~~~~~l 846 (1105)
+..++++|..+++.++..+.+.++.. .. ..+..+.. ............+.|...++.||+....+
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~lr~~---~~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 60 NVDLILLDIEMPVMDGMEFLRHAKLK---TR-AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp TCCEEEECTTSCCCTTCHHHHHHHHH---CC-CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CC-CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 35789999999998875544444321 11 22222222 12333344566778888999999986543
No 281
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=69.82 E-value=18 Score=40.97 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=74.4
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.++....+..+...++..|..+..+.....+...++. .+..
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~----------------------------------~~~d 51 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES----------------------------------EQPD 51 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH----------------------------------SCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh----------------------------------CCCC
Confidence 357788888888999999999999887766655544433321 2347
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCC-ChhHHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAV 854 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~ 854 (1105)
++++|+.++++++-.+.+.++.. ... ..+++...........+..+.|..-++.||+ ....+...+....
T Consensus 52 lvllD~~mp~~~G~~~~~~lr~~---~~~-~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 52 LVICDLRMPQIDGLELIRRIRQT---ASE-TPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp EEEECCCSSSSCTHHHHHHHHHT---TCC-CCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHhh---CCC-CcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 89999999999986555554432 112 2233333333334445566788899999999 4566666555443
No 282
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=69.12 E-value=18 Score=37.13 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=74.6
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.++....+..+...+...|..+..+.....+...+.. .+..+
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~----------------------------------~~~dl 51 (230)
T 2oqr_A 6 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR----------------------------------AGADI 51 (230)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH----------------------------------HCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc----------------------------------cCCCE
Confidence 46777888888888888888888776655554443332221 13468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+.+.++. . ....+..+ .............+.|...++.||+....+...+..+..+
T Consensus 52 vllD~~l~~~~g~~~~~~l~~---~-~~~~ii~l-t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 52 VLLDLMLPGMSGTDVCKQLRA---R-SSVPVIMV-TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEESSCSSSCHHHHHHHHHH---H-CSCSEEEE-ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHc---C-CCCCEEEE-eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999998887544444432 1 12223323 2222223344555688888999999999999999887654
No 283
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=68.62 E-value=23 Score=35.26 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=71.3
Q ss_pred CcEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 700 NTVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 700 ~~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
+..+++.+.....+..+...+...|..+..+...... ...+.
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a--------------------------------------l~~~~ 53 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEA--------------------------------------FDVPV 53 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSS--------------------------------------CSSCC
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhh--------------------------------------CCCCC
Confidence 4467788888888888888888777665543321110 01245
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
.++++|..++++++. +...++. ..... .+++..............+.|...++.||+....+...+..+..
T Consensus 54 dlvl~D~~mp~~~g~-l~~~~~~---~~~~~-~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 54 DVVFTSIFQNRHHDE-IAALLAA---GTPRT-TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp SEEEEECCSSTHHHH-HHHHHHH---SCTTC-EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CEEEEeCCCCccchH-HHHHHhc---cCCCC-CEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 688999999887654 3333322 11222 23333333333445556678899999999999999988877654
No 284
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=67.03 E-value=35 Score=31.04 Aligned_cols=117 Identities=8% Similarity=0.030 Sum_probs=69.3
Q ss_pred cEEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 701 TVVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
..+++.+.....+..+..++...+..+..+...+.+... . . .. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~--------------------------------~-~-~~-~d 48 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTL--------------------------------S-L-NK-QD 48 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTS--------------------------------C-C-CT-TE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHh--------------------------------h-c-cC-CC
Confidence 356777778888888888887776555544443322110 0 0 12 57
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCc-----hhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTS-----PIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
++++|..+++.++..+.+.++. ......+.++ ...... .......+.|...++.||+....+...+..+..
T Consensus 49 lvi~D~~l~~~~g~~~~~~l~~---~~~~~~ii~~-s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 49 IIILDLMMPDMDGIEVIRHLAE---HKSPASLILI-SGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH---TTCCCEEEEE-ESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHh---CCCCCCEEEE-EeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 8999999988776444333332 2222233333 222221 222334556677889999999999999988765
Q ss_pred c
Q 001298 856 G 856 (1105)
Q Consensus 856 ~ 856 (1105)
+
T Consensus 125 ~ 125 (135)
T 3eqz_A 125 R 125 (135)
T ss_dssp C
T ss_pred h
Confidence 4
No 285
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=65.81 E-value=40 Score=34.11 Aligned_cols=114 Identities=12% Similarity=0.063 Sum_probs=71.5
Q ss_pred EEEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEE
Q 001298 702 VVVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYV 781 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1105)
.+++.+.....+..+...+...| .+..+.+...+.. .. .+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~-----------------------------------~~-~~~dl 46 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLN-----------------------------------DE-EAFHV 46 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHH-----------------------------------CC-SCCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHH-----------------------------------hc-CCCCE
Confidence 35667777777888888888777 4444433322111 01 34468
Q ss_pred EEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 782 VVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 782 v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+++|..+++.++..+...++. ......+. +..............+.|.+.++.||+....+...+..+..+
T Consensus 47 vllD~~lp~~~g~~~~~~lr~---~~~~~~ii-~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 47 VVLDVMLPDYSGYEICRMIKE---TRPETWVI-LLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEESBCSSSBHHHHHHHHHH---HCTTSEEE-EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHh---cCCCCcEE-EEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999877544333332 21222333 333333334445566788999999999999999998887654
No 286
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=65.63 E-value=56 Score=37.34 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=67.1
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 949 GLRILLAED----TPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 949 g~~ILIvdD----~~~~~~~l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
|..++++|- .....+.++.+-+..+..|. .+.+.++|..+.+. ..|.|..
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a------------------------GAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc------------------------CCCEEEE
Confidence 456777642 22334455454444476665 47889888887753 5788877
Q ss_pred cCC------C-----CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1023 DCQ------M-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1023 Di~------M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-.. . .....++++..+++.... .++|||+--+-.+..+..+++.+|||....
T Consensus 212 G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~---~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 212 GIGPGSICTTRIVAGVGVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp CC---------CCSCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred eCCCCcCcccccccccchhHHHHHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 311 0 012346777777654221 359999988888999999999999998764
No 287
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=64.06 E-value=59 Score=35.07 Aligned_cols=84 Identities=19% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc---CCCCCCCHHHHHHHHHc
Q 001298 965 ACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD---CQMPKMDGYEATIEIRK 1040 (1105)
Q Consensus 965 l~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~ 1040 (1105)
+......+|..+ ..+.+.+|+..+++. ..|+|-.- ...... +++.++++++
T Consensus 154 l~~~a~~lGl~~lvev~t~ee~~~A~~~------------------------Gad~IGv~~r~l~~~~~-dl~~~~~l~~ 208 (272)
T 3qja_A 154 MLDRTESLGMTALVEVHTEQEADRALKA------------------------GAKVIGVNARDLMTLDV-DRDCFARIAP 208 (272)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHH------------------------TCSEEEEESBCTTTCCB-CTTHHHHHGG
T ss_pred HHHHHHHCCCcEEEEcCCHHHHHHHHHC------------------------CCCEEEECCCccccccc-CHHHHHHHHH
Confidence 344455678865 457888887665532 46776653 222222 3677788876
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.-+ .++|+|+-.+-.+.++..++.++|+|+++.
T Consensus 209 ~v~----~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 209 GLP----SSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp GSC----TTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hCc----ccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 432 258999999999999999999999999998
No 288
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=63.72 E-value=22 Score=36.46 Aligned_cols=119 Identities=11% Similarity=-0.026 Sum_probs=72.4
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeec-c-cchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccC
Q 001298 701 TVVVLATVGSMERMIISQWLRK-KKVSTLET-S-EWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALID 777 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~-~g~~~~~~-~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1105)
..+++.++....+..+..++.. .|..+... . ..+.+.. . ....
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~----~------------------------------~~~~ 53 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEEN----K------------------------------PESR 53 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTT----C------------------------------SGGG
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHH----H------------------------------hhcc
Confidence 3577788888888888888884 46654321 1 1111100 0 0112
Q ss_pred CcEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 778 PVYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 778 ~~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
+..++++|+.++++++..+...++.. ...... +++..............+.|.+.++.||+....+...+..+..+
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~--~~~~~~-ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHI--SCPDAK-EVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHH--HCTTCE-EEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--hCCCCc-EEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 35789999999998775444433321 111222 23333333334455666788889999999999999999887764
No 289
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.55 E-value=38 Score=34.72 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=66.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+.+||++ |-+..-...+..+|+..||+|.... ..++.++.+++ ..||+|.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~-----------------------~~~d~v~ 144 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK-----------------------YQPDIVG 144 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH-----------------------HCCSEEE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3478888 7788888999999999999998654 34555555543 3799999
Q ss_pred EcCCCCCC-CH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 MDCQMPKM-DG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 mDi~MP~m-dG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+-+.|+.- +. -++.+++|+... .+++||++--+....+ -+.+.|+|.|-.
T Consensus 145 lS~~~~~~~~~~~~~i~~l~~~~~---~~~~~v~vGG~~~~~~---~~~~~gad~~~~ 196 (210)
T 1y80_A 145 MSALLTTTMMNMKSTIDALIAAGL---RDRVKVIVGGAPLSQD---FADEIGADGYAP 196 (210)
T ss_dssp EECCSGGGTHHHHHHHHHHHHTTC---GGGCEEEEESTTCCHH---HHHHHTCSEECS
T ss_pred EeccccccHHHHHHHHHHHHhcCC---CCCCeEEEECCCCCHH---HHHHcCCeEEEC
Confidence 99987642 22 345566665321 1347877665555432 235679998754
No 290
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=62.82 E-value=89 Score=31.68 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=68.5
Q ss_pred EEEEEeCCH--HHHHHHHHHHHhcCCEEEEE----CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 951 RILLAEDTP--LIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 951 ~ILIvdD~~--~~~~~l~~~L~~~g~~v~~a----~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
..+++-+.+ .....+...+++.|..+... .+..+.++.+.. ...|.|-++
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------------------~g~d~i~v~- 134 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------------------AGADMLAVH- 134 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------------------HTCCEEEEE-
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------------------cCCCEEEEc-
Confidence 444444443 33345566677778877653 333333333322 147888776
Q ss_pred CCCCC-------CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHH
Q 001298 1025 QMPKM-------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRL 1092 (1105)
Q Consensus 1025 ~MP~m-------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l 1092 (1105)
|+. .+++.++++|+.. +++||++--+- ..++..+++++|+|.++. |.-++.+....+.+.
T Consensus 135 --~g~~g~~~~~~~~~~i~~l~~~~-----~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 135 --TGTDQQAAGRKPIDDLITMLKVR-----RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp --CCHHHHHTTCCSHHHHHHHHHHC-----SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred --CCCcccccCCCCHHHHHHHHHHc-----CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 332 3578888888642 24788776555 478888999999999876 555666666666555
Q ss_pred hh
Q 001298 1093 TK 1094 (1105)
Q Consensus 1093 ~~ 1094 (1105)
++
T Consensus 207 ~~ 208 (211)
T 3f4w_A 207 LL 208 (211)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 291
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=61.47 E-value=73 Score=33.91 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=75.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEE---CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVV---PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+.+||++ |-+..-..++..+|+..||+|... ...++.++.+.+ ..||+|.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~-----------------------~~~d~V~ 179 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK-----------------------EKPIMLT 179 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH-----------------------HCCSEEE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4588888 777888889999999999998643 345556666654 3799999
Q ss_pred EcCCCCC-CCH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhc
Q 001298 1022 MDCQMPK-MDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1022 mDi~MP~-mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~ 1095 (1105)
+-+.|+. +.. -++.+++|+.. .++||++--+....+ . +-+.|+|.|-. +..+....+.++++.
T Consensus 180 lS~l~~~~~~~~~~~i~~l~~~~-----~~~~v~vGG~~~~~~-~--~~~igad~~~~---da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 180 GTALMTTTMYAFKEVNDMLLENG-----IKIPFACGGGAVNQD-F--VSQFALGVYGE---EAADAPKIADAIIAG 244 (258)
T ss_dssp EECCCTTTTTHHHHHHHHHHTTT-----CCCCEEEESTTCCHH-H--HHTSTTEEECS---STTHHHHHHHHHHTT
T ss_pred EEeeccCCHHHHHHHHHHHHhcC-----CCCcEEEECccCCHH-H--HHHcCCeEEEC---CHHHHHHHHHHHHcc
Confidence 9998764 332 34666777532 347777655554433 2 34789988765 445566666666654
No 292
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=61.37 E-value=60 Score=39.90 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=80.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
..+|+++ |.+..-..++..+|+..||+|.--. ..++.++.+.+ ..+|+|.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 652 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE-----------------------ADVHVVG 652 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 4578876 6666777788889999999997642 45677777654 3799999
Q ss_pred EcCCCCC-CC-HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1022 MDCQMPK-MD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1022 mDi~MP~-md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+-..|.. |. .-++.+.+|+. +..+++|++ -+-.-..+...+.+.|+|+|..-=-+..++...+...++
T Consensus 653 lSsl~~~~~~~~~~vi~~L~~~----G~~~i~Viv-GG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 653 VSSLAGGHLTLVPALRKELDKL----GRPDILITV-GGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp EEECSSCHHHHHHHHHHHHHHT----TCTTSEEEE-EESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred EeeecHhHHHHHHHHHHHHHhc----CCCCCEEEE-cCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 9887752 22 24455666653 223455443 433334466778999999999866777777777766653
No 293
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=61.36 E-value=1e+02 Score=34.73 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=66.5
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+..++++| +.+...+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a------------------------GAD~I~ 175 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 175 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc------------------------CCCEEE
Confidence 45677775 3333444455554444 55554 47889998887753 578888
Q ss_pred EcCCCCC------------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 mDi~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.-+. |+ ...++++..+++.... .++|||+--+-.+..+..+++.+|||....
T Consensus 176 vG~g-pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 176 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp ECSS-CSTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EecC-CCCCCCcccccCcccchHHHHHHHHHHHhh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 7311 11 2346667777653222 359999988888899999999999998865
No 294
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=60.08 E-value=48 Score=37.53 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=73.3
Q ss_pred cEEEEeecChhhHHHHHHHHHh-cCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 701 TVVVLATVGSMERMIISQWLRK-KKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
..+++.++....+..+...+.. .+..+..+.+...+...+.. ..+.
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~---------------------------------~~~~ 50 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILES---------------------------------CGHV 50 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHH---------------------------------HSCE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhh---------------------------------CCCC
Confidence 3577788888888888888887 46555555554444333221 1245
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCc-----hhhHhhhhcCCcEEEecCCChhHHHHHHHHHH
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTS-----PIKTELSREGQNIVVTKPLYKGKMIQLLETAV 854 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~ 854 (1105)
.++++|+.++++++-.+.+.++. .. ....+.+....... ....+..+.|...++.||+....+...+....
T Consensus 51 DlvllDi~mP~~dG~ell~~l~~---~~-~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~ 126 (400)
T 3sy8_A 51 DIAICDLQMSGMDGLAFLRHASL---SG-KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYN 126 (400)
T ss_dssp EEEEECSSCSSSCHHHHHHHHHH---HT-CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh---cC-CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHH
Confidence 89999999999998554443332 11 12222232222222 11223445677778999999999999888776
Q ss_pred hc
Q 001298 855 RG 856 (1105)
Q Consensus 855 ~~ 856 (1105)
..
T Consensus 127 ~~ 128 (400)
T 3sy8_A 127 AR 128 (400)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 295
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=59.44 E-value=53 Score=34.82 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=62.1
Q ss_pred EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCC-------CCHHHHHHHHHccccccCCCC
Q 001298 977 SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARN 1049 (1105)
Q Consensus 977 ~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~ 1049 (1105)
..+.+.+|+..+.+ ...|+|...--.|. .-|++.++++++... .+
T Consensus 140 ~S~ht~~Ea~~A~~------------------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~----~~ 191 (243)
T 3o63_A 140 RSTHDPDQVAAAAA------------------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG----DD 191 (243)
T ss_dssp EEECSHHHHHHHHH------------------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC-------C
T ss_pred EeCCCHHHHHHHhh------------------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc----CC
Confidence 35788888877664 25899988543322 237888888886411 25
Q ss_pred cceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhh
Q 001298 1050 IPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1050 ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~ 1094 (1105)
+|||++-+- ..++...++++|+|.+.. +.-++..-...+.+.++
T Consensus 192 iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~ 240 (243)
T 3o63_A 192 KPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALT 240 (243)
T ss_dssp CCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 899999887 677888999999999986 55566666666655554
No 296
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=58.30 E-value=12 Score=35.92 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=30.3
Q ss_pred cCcccccccccccCCCCCCCcEEEEEEeeccchhHHHHHH
Q 001298 213 TNSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSVGQLMK 252 (1105)
Q Consensus 213 ~~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i~~~l~ 252 (1105)
...+.+.++.||++. +|+++||+.|...+..+...++
T Consensus 102 ~~g~~~~~~~PV~~~---~g~viGvv~vg~~~~~~~~~~~ 138 (142)
T 3by8_A 102 FLAQALRVFTPIYDE---NHKQIGVVAIGLELSRVTQQIN 138 (142)
T ss_dssp SSSCEEEEEEEEECT---TSCEEEEEEEEEEHHHHHHHHH
T ss_pred ccEEEEEEEEeEEcC---CCCEEEEEEEeEEHHHHHHHHH
Confidence 355788888899985 7899999999988888777654
No 297
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.08 E-value=45 Score=40.12 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCEEEEE----eCCHHHHHHH----HHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001298 949 GLRILLA----EDTPLIQIVA----CKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1017 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l----~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1105)
..+||++ |=+.+-..++ ..+|+..||+|.-.. ..++.++.+.+ ..+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E-----------------------edA 658 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE-----------------------LKA 658 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH-----------------------TTC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH-----------------------cCC
Confidence 4689988 4454444333 578999999997543 56777777754 479
Q ss_pred cEEEEcCCCCC----CCHH-HHHHHHHccccccCCC-CcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Q 001298 1018 DLILMDCQMPK----MDGY-EATIEIRKSESEHGAR-NIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091 (1105)
Q Consensus 1018 DlIlmDi~MP~----mdG~-e~~~~IR~~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1091 (1105)
|+|.+-+.|.. |..+ ++.+.+|+.. .. .+||++ -+..-..+ -+.+.|+|.|..-.....++...+..
T Consensus 659 DVVGLSsLLTt~dihL~~MkevIelLrE~G----lrDkIkVIV-GGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 659 DAILASTIISHDDIHYKNMKRIHELAVEKG----IRDKIMIGC-GGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVK 731 (763)
T ss_dssp SEEEEECCCCGGGHHHHHHHHHHHHHHHTT----CTTTSEEEE-ECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred CEEEEeccccCchhhHHHHHHHHHHHHhcC----CCCCCEEEE-ECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHH
Confidence 99999999986 4443 3445566432 22 356555 33333333 35689999999888888888877776
Q ss_pred Hhhc
Q 001298 1092 LTKN 1095 (1105)
Q Consensus 1092 l~~~ 1095 (1105)
.++.
T Consensus 732 ~l~e 735 (763)
T 3kp1_A 732 KRRE 735 (763)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 298
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.08 E-value=35 Score=35.46 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=66.6
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+.+||+. |-+..-..++..+|+..||+|..-. ..++.++.+.+ ..||+|.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~-----------------------~~~d~v~ 148 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK-----------------------HKGEKVL 148 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH-----------------------TTTSCEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3588888 7788888899999999999997653 45566666654 4799999
Q ss_pred E--cCCCC-CCCH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 M--DCQMP-KMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 m--Di~MP-~mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+ -+.|. .|+. -++.+.+|+... ..++||++--+-... + -|-+.|+|.|-.
T Consensus 149 l~~S~l~~~~~~~~~~~i~~l~~~~~---~~~v~v~vGG~~~~~-~--~a~~iGad~~~~ 202 (215)
T 3ezx_A 149 LVGSALMTTSMLGQKDLMDRLNEEKL---RDSVKCMFGGAPVSD-K--WIEEIGADATAE 202 (215)
T ss_dssp EEEECSSHHHHTHHHHHHHHHHHTTC---GGGSEEEEESSSCCH-H--HHHHHTCCBCCS
T ss_pred EEchhcccCcHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCH-H--HHHHhCCeEEEC
Confidence 9 88774 2222 345566665321 125777665544443 3 345679998854
No 299
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=56.08 E-value=19 Score=37.10 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=73.7
Q ss_pred EEEEeecChhhHHHHHHHHHhcC-ceee-ecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCc
Q 001298 702 VVVLATVGSMERMIISQWLRKKK-VSTL-ETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPV 779 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~~~g-~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1105)
.+++.++....+..+..++...+ .... .+.+...+...+.. .+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~----------------------------------~~~ 48 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA----------------------------------ARP 48 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH----------------------------------HCC
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh----------------------------------cCC
Confidence 35677778888888888888776 5532 34444433332221 134
Q ss_pred EEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHhc
Q 001298 780 YVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVRG 856 (1105)
Q Consensus 780 ~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~~ 856 (1105)
.++++|..+++.++..+...++. ... ...+++..............+.|.+.++.||+....+...+..+..+
T Consensus 49 dlvllD~~lp~~~g~~~~~~lr~---~~~-~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 49 DVAVLDVRLPDGNGIELCRDLLS---RMP-DLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp SEEEECSEETTEEHHHHHHHHHH---HCT-TCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH---hCC-CCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 68899999999877544333332 111 22233344434444455666788888999999999999988887654
No 300
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=55.93 E-value=22 Score=37.45 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=43.5
Q ss_pred ccEEEEcC--CCCCCCH--------------------HHHHHHHHccccccCCCCcceEEEeccCC------HHHHHHHH
Q 001298 1017 FDLILMDC--QMPKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHAM------NADEKKCL 1068 (1105)
Q Consensus 1017 ~DlIlmDi--~MP~mdG--------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~~------~~~~~~~l 1068 (1105)
.|.|-+|+ .=|.||| ++++++||+. .++||++++.... .+....|+
T Consensus 32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~------~~~pv~~~~~~~~~~~~~~~~~~~~~~ 105 (248)
T 1geq_A 32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH------SSTPIVLMTYYNPIYRAGVRNFLAEAK 105 (248)
T ss_dssp BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT------CCCCEEEEECHHHHHHHCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh------CCCCEEEEeccchhhhcCHHHHHHHHH
Confidence 77777773 2357776 6777888864 2478988884222 56788899
Q ss_pred hcCCCEEEEcCCCHHH
Q 001298 1069 GVGMNAYLTKPIDSER 1084 (1105)
Q Consensus 1069 ~aG~d~yL~KPi~~~~ 1084 (1105)
++|+|..+.=....++
T Consensus 106 ~~Gad~v~~~~~~~~~ 121 (248)
T 1geq_A 106 ASGVDGILVVDLPVFH 121 (248)
T ss_dssp HHTCCEEEETTCCGGG
T ss_pred HCCCCEEEECCCChhh
Confidence 9999999986554443
No 301
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=54.59 E-value=57 Score=33.12 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=41.7
Q ss_pred CccEEEEcCCCCC-------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+|.|+++--.|. ..|++.++++++. .++||++.-+-. .++..+++++|+|.+..
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVES------VKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHH------CSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh------CCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 5899998754443 3478888888864 248998877666 78888899999999864
No 302
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=53.38 E-value=93 Score=33.34 Aligned_cols=115 Identities=6% Similarity=0.038 Sum_probs=74.5
Q ss_pred CEEEEE----eCCHHHHHHHHHH--------HHhc-CCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCC
Q 001298 950 LRILLA----EDTPLIQIVACKI--------LEKV-GATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPD 1013 (1105)
Q Consensus 950 ~~ILIv----dD~~~~~~~l~~~--------L~~~-g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1105)
.+|+++ |-+.+-..++..+ |+.. ||+|.-.. ..++.++.+.+
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e---------------------- 178 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE---------------------- 178 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH----------------------
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH----------------------
Confidence 477776 6666667777777 9999 99997533 45566666653
Q ss_pred CCCccEEEEcCCCCC----CCHH-HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHH
Q 001298 1014 TPRFDLILMDCQMPK----MDGY-EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVST 1088 (1105)
Q Consensus 1014 ~~~~DlIlmDi~MP~----mdG~-e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~ 1088 (1105)
..+|+|.+-+.|.. +... ++.+.+|+... ..++||++=-+ .. +...+.+.|+|.|..--....++...
T Consensus 179 -~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~---~~~i~vivGG~-~~--~~~~a~~iGad~~~~da~~~~~~a~~ 251 (262)
T 1xrs_B 179 -LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGL---RDRFVLLCGGP-RI--NNEIAKELGYDAGFGPGRFADDVATF 251 (262)
T ss_dssp -TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTC---GGGSEEEEECT-TC--CHHHHHTTTCSEEECTTCCHHHHHHH
T ss_pred -cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCC---CCCCEEEEECC-cC--CHHHHHHcCCeEEECCchHHHHHHHH
Confidence 47999999999986 2222 34455554311 12366654333 33 23457789999998777777777776
Q ss_pred HHHHh
Q 001298 1089 ILRLT 1093 (1105)
Q Consensus 1089 I~~l~ 1093 (1105)
+...+
T Consensus 252 l~~~~ 256 (262)
T 1xrs_B 252 AVKTL 256 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 303
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=52.37 E-value=85 Score=38.79 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=79.2
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
..+|+++ |.+..-..++..+|+..||+|.--. ..++.++.+.+ ..+|+|.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e-----------------------~~adiVg 660 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD-----------------------ADVHAVG 660 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-----------------------TTCSEEE
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3577776 4566667788889999999998642 45677777654 3799999
Q ss_pred EcCCCCC-CC-HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1022 MDCQMPK-MD-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1022 mDi~MP~-md-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
+-..|.. |. .-++.+.+|+. +..+++|++ -+-.-..+...+.++|+|+|...--+..+....+...+
T Consensus 661 lSsl~~~~~~~~~~vi~~Lr~~----G~~dv~Viv-GG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 661 VSTLAAGHKTLVPELIKELNSL----GRPDILVMC-GGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp EEECSSCHHHHHHHHHHHHHHT----TCTTSEEEE-EESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHHHHHHHHHhc----CCCCCEEEE-eCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 9877642 22 24455666653 223455443 33233446677889999999986668888877777766
No 304
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=51.96 E-value=39 Score=36.15 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=49.6
Q ss_pred CccEEEEcCCC--CCCCH--------------------HHHHHHHHccccccCCCCcceEEEeccC------CHHHHHHH
Q 001298 1016 RFDLILMDCQM--PKMDG--------------------YEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKC 1067 (1105)
Q Consensus 1016 ~~DlIlmDi~M--P~mdG--------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~ 1067 (1105)
..|+|-+++-. |.+|| ++++++||+.. +++||++++-.. .......|
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~-----~~~Pi~~m~y~n~v~~~g~~~f~~~~ 118 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEF-----PDIPFLLMTYYNPIFRIGLEKFCRLS 118 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----TTSCEEEECCHHHHHHHCHHHHHHHH
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-----CCCCEEEEecCcHHHHhhHHHHHHHH
Confidence 58999987532 33444 35577777531 258999985432 14566789
Q ss_pred HhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1068 LGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1068 l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
.++|+|+++.=.+..+++...+..+-
T Consensus 119 ~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 119 REKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 99999999998888887766555443
No 305
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=49.00 E-value=73 Score=34.94 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=68.9
Q ss_pred EEEEeecChhhHHHHHHHHH-hcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcE
Q 001298 702 VVVLATVGSMERMIISQWLR-KKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVY 780 (1105)
Q Consensus 702 ~v~~~~~~~~~r~~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1105)
.++++++....+..+...+. ..|..+..+.....+...+.. .+..
T Consensus 20 ~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~----------------------------------~~~d 65 (358)
T 3bre_A 20 MVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ----------------------------------IKPT 65 (358)
T ss_dssp EEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH----------------------------------HCCS
T ss_pred eEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh----------------------------------CCCC
Confidence 46667777777777777664 345555444444333332221 1246
Q ss_pred EEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHH
Q 001298 781 VVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETA 853 (1105)
Q Consensus 781 ~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~ 853 (1105)
++++|+.++++++..+.+.++..... .... +++..............+.|...++.||+....+...+...
T Consensus 66 lvl~D~~mp~~~G~~~~~~l~~~~~~-~~~~-ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 66 VILQDLVMPGVDGLTLLAAYRGNPAT-RDIP-IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp EEEEESBCSSSBHHHHHHHHTTSTTT-TTSC-EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCccc-CCCc-EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 88999999999886544444332111 1122 23333333334445566789999999999998888777654
No 306
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=47.82 E-value=60 Score=33.39 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=40.5
Q ss_pred CccEEEEcCCCCC-------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPK-------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|+++-..|. --|++.++++++. .++||++.-+- +.++..+++++|+|.+..
T Consensus 130 gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~------~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 130 DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR------ISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp TCSEEEEECCC----------CHHHHHHHHHHH------CCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh------CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5899988654332 2367888888753 24899988777 788999999999998875
No 307
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=47.49 E-value=1.1e+02 Score=33.02 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=62.7
Q ss_pred HHHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC---CCCCCCHHHHHHHHHc
Q 001298 965 ACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC---QMPKMDGYEATIEIRK 1040 (1105)
Q Consensus 965 l~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi---~MP~mdG~e~~~~IR~ 1040 (1105)
+......+|..+ ..+.|.+|+..++. ..+|+|=.-- .--..| ++.+.++.+
T Consensus 161 l~~~a~~lGl~~lvevh~~eEl~~A~~------------------------~ga~iIGinnr~l~t~~~d-l~~~~~L~~ 215 (272)
T 3tsm_A 161 LEDTAFALGMDALIEVHDEAEMERALK------------------------LSSRLLGVNNRNLRSFEVN-LAVSERLAK 215 (272)
T ss_dssp HHHHHHHTTCEEEEEECSHHHHHHHTT------------------------SCCSEEEEECBCTTTCCBC-THHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCHHHHHHHHh------------------------cCCCEEEECCCCCccCCCC-hHHHHHHHH
Confidence 334445678875 45788888766553 2577775431 111222 567777775
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHH
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMV 1086 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~ 1086 (1105)
.-+ ..+|+|+-++-.+.++..++.++|+|++|. ||-++..-.
T Consensus 216 ~ip----~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~ 262 (272)
T 3tsm_A 216 MAP----SDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAAT 262 (272)
T ss_dssp HSC----TTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHH
T ss_pred hCC----CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHH
Confidence 432 258999999999999999999999999997 565655433
No 308
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=47.34 E-value=85 Score=32.79 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=57.8
Q ss_pred EEEEEeCCH-HHHHHHHHHHHhcCCEEEEECC---HHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCcc-EEE-EcC
Q 001298 951 RILLAEDTP-LIQIVACKILEKVGATVSVVPD---GLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFD-LIL-MDC 1024 (1105)
Q Consensus 951 ~ILIvdD~~-~~~~~l~~~L~~~g~~v~~a~n---g~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-lIl-mDi 1024 (1105)
..+++.|-+ .....+...+++.|..+...-+ ..++++.+... .| +|. +.+
T Consensus 110 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~------------------------~d~~i~~~~~ 165 (248)
T 1geq_A 110 DGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM------------------------TTGFVYLVSL 165 (248)
T ss_dssp CEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH------------------------CSSEEEEECC
T ss_pred CEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc------------------------CCCeEEEEEC
Confidence 344444422 2233455666777877665543 35666655431 33 443 444
Q ss_pred CCCCCC---------HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1025 QMPKMD---------GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1025 ~MP~md---------G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
|++. +++.++++|+. .++||++--+-...++..+++++|+|.++.=
T Consensus 166 --~G~~g~~~~~~~~~~~~i~~l~~~------~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 166 --YGTTGAREEIPKTAYDLLRRAKRI------CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp --C-------CCCHHHHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred --CccCCCCCCCChhHHHHHHHHHhh------cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 5433 34567777753 2489988777777789999999999999863
No 309
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=46.15 E-value=1.1e+02 Score=34.43 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=63.9
Q ss_pred CEEEEEe----CCHHHHHHHHHHHHhcCCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 950 LRILLAE----DTPLIQIVACKILEKVGATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 950 ~~ILIvd----D~~~~~~~l~~~L~~~g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
..+++++ +.....+.++.+-+..+..|. .+.+.++|..+.+. ..|.|..-
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a------------------------GaD~I~VG 173 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN------------------------GADGIKVG 173 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT------------------------TCSEEEEC
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc------------------------CcCEEEEe
Confidence 3455553 233344555555555566655 47888888776642 57888772
Q ss_pred C------CC-----CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1024 C------QM-----PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1024 i------~M-----P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+ .. .....++++..+++.... ..+|||+--+-.+.++..+++.+|||..+.
T Consensus 174 ~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~---~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 174 IGPGSICTTRIVAGVGVPQITAIEKCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp SSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHH---HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCcCCCcccccCCCCCcHHHHHHHHHHHhh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 00 012346666666543222 248999988888899999999999998764
No 310
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=45.82 E-value=2.1e+02 Score=33.60 Aligned_cols=103 Identities=10% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCEEEEEeCC----HHHHHHHHHHHHhcC-CEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAEDT----PLIQIVACKILEKVG-ATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvdD~----~~~~~~l~~~L~~~g-~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|..+++++.. ....+.++.+-+..+ ..+. .+.+.++|..+.+. ..|.|.
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a------------------------Gad~i~ 323 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA------------------------GANVVK 323 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh------------------------CCCEEE
Confidence 5667877643 233345555555543 3333 46788888777653 578887
Q ss_pred EcCCCC-----------CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1022 MDCQMP-----------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1022 mDi~MP-----------~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
..+.-- +...++++..+++.... ..+|||+--+-....+..+|+.+|||..+.=
T Consensus 324 vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 324 VGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK---HGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp ECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHT---TTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ECCCCccccccccccCCCCCcHHHHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 633110 12235666666543322 2499999999999999999999999998763
No 311
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=45.34 E-value=57 Score=34.89 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
+.+.++++|+. .++|||+-.+-.+.++..+++++|+|.++.=
T Consensus 166 ~~~~l~~i~~~------~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQ------AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHH------CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhc------CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 47888888863 2589999999888999999999999999863
No 312
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=45.24 E-value=64 Score=33.79 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=49.8
Q ss_pred cc-EEEEcCCCCCC-C--HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE------cCCCHHHHH
Q 001298 1017 FD-LILMDCQMPKM-D--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMV 1086 (1105)
Q Consensus 1017 ~D-lIlmDi~MP~m-d--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L~ 1086 (1105)
++ ++++++.-.++ . .++.++++++. .++|||+-.+-...++..+++++|+|+.+. .|++++++.
T Consensus 166 ~~~i~~~~~~~~g~~~g~~~~~i~~l~~~------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 166 AGEILLTSMDRDGTKEGYDLRLTRMVAEA------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp CCEEEEEETTTTTTCSCCCHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHH
T ss_pred CCEEEEecccCCCCcCCCCHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 55 55565432211 2 28999999864 258999999988889999999999999886 567877776
Q ss_pred HHHH
Q 001298 1087 STIL 1090 (1105)
Q Consensus 1087 ~~I~ 1090 (1105)
..+.
T Consensus 240 ~~l~ 243 (252)
T 1ka9_F 240 RYLA 243 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 313
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=45.18 E-value=36 Score=44.36 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred EEEEeCCCCCChhh--------HhhhhcccccCCC----CCCCCCCCccchHHHHHHHHHH
Q 001298 613 FEVDDTGCGIDQSK--------WETVFESFEQGDP----STTRKHGGTGLGLSIVRTLVNK 661 (1105)
Q Consensus 613 ~~V~DtG~GI~~e~--------l~~IFe~F~q~~~----s~~~~~~GtGLGLaIvk~LVe~ 661 (1105)
++|.|+|.|||-+. .+-||....-+.. +.....|=.|.|.+.|.-|-+.
T Consensus 95 isV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 95 IEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 89999999999653 4556765443321 1111224469999999887543
No 314
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=45.06 E-value=1.7e+02 Score=34.23 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhc-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAE----DTPLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvd----D~~~~~~~l~~~L~~~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|..++++| ..+...+.++.+-+.. +..+.. +.+.++|..+.+. ..|.|.
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 296 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA------------------------GADAVK 296 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc------------------------CCCEEE
Confidence 45567665 3344445565555555 444443 6788888776652 588888
Q ss_pred EcCCCCC------------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 mDi~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+-+ =|+ ...++++.++++.... ..+|||+--+-...++..+++.+|||..+.
T Consensus 297 vg~-g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~---~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 297 VGI-GPGSICTTRIVAGVGVPQISAIANVAAALEG---TGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp ECS-SCSTTCHHHHHTCBCCCHHHHHHHHHHHHTT---TTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ECC-CCCcCCCccccCCCCccHHHHHHHHHHHhcc---CCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 621 111 2245666777654322 259999999999999999999999999875
No 315
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.31 E-value=85 Score=32.24 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=57.9
Q ss_pred CCCEEEEEe------CCHHHHHHHHHHHHhcCCEEEEE----CCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCc
Q 001298 948 EGLRILLAE------DTPLIQIVACKILEKVGATVSVV----PDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRF 1017 (1105)
Q Consensus 948 ~g~~ILIvd------D~~~~~~~l~~~L~~~g~~v~~a----~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1105)
.+.+|++++ |...+.....+.|+++|+++... .+.++..+.++. .
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~-------------------------a 80 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK-------------------------N 80 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH-------------------------S
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh-------------------------C
Confidence 457999997 44457778889999999999888 488887777753 6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHccccc-----cCCCCcceEEEec
Q 001298 1018 DLILMDCQMPKMDGYEATIEIRKSESE-----HGARNIPIVALTA 1057 (1105)
Q Consensus 1018 DlIlmDi~MP~mdG~e~~~~IR~~~~~-----~~~~~ipIIalTa 1057 (1105)
|.|++ |+-+-+.+++.+|+..-. .-....|++..+|
T Consensus 81 d~I~l----~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 81 DFIYV----TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp SEEEE----CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CEEEE----CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 88884 887777777766643210 0012478998876
No 316
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=43.90 E-value=19 Score=32.21 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCCChhHHHHHHHHHHh
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPLYKGKMIQLLETAVR 855 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~~~~~l~~~l~~~~~ 855 (1105)
..++++|..+.+.++..+.+.++ .......+. +..............+.|...++.||+....+...+..+..
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~---~~~~~~~ii-~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 48 PDVLLSDIRMPGMDGLALLKQIK---QRHPMLPVI-IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CSCEEECSCSSHHHHCSTHHHHH---HHCTTSCCC-CBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCCHHHHHHHHH---hhCCCCCEE-EEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 45677888777654422222221 111122222 22222222333445567888899999999999988877654
No 317
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=43.61 E-value=12 Score=40.40 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=48.9
Q ss_pred CEEEEEeCC--HHHHHHHHHHHHhcCCEEEEECCHHH--HHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 950 LRILLAEDT--PLIQIVACKILEKVGATVSVVPDGLQ--AVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 950 ~~ILIvdD~--~~~~~~l~~~L~~~g~~v~~a~ng~e--Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.+||||+++ +.-...+..+|+..|++|.....-.- -.+.+. .||+||++-.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~-------------------------~yDvIIl~d~ 59 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA-------------------------KQDLVILSDY 59 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH-------------------------TCSEEEEESC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh-------------------------cCCEEEEcCC
Confidence 489999998 66777888999999999988764421 113332 6999988732
Q ss_pred CC-CCCHHHHHHHHHccccccCCCCcceEEEec
Q 001298 1026 MP-KMDGYEATIEIRKSESEHGARNIPIVALTA 1057 (1105)
Q Consensus 1026 MP-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1057 (1105)
.. ..+- +.++.|++.-.+. --+|++.+
T Consensus 60 ~~~~l~~-~~~~~L~~yV~~G----GgLi~~gG 87 (259)
T 3rht_A 60 PAERMTA-QAIDQLVTMVKAG----CGLVMLGG 87 (259)
T ss_dssp CGGGBCH-HHHHHHHHHHHTT----CEEEEECS
T ss_pred ccccCCH-HHHHHHHHHHHhC----CeEEEecC
Confidence 22 2332 4556666654321 23555544
No 318
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=42.59 E-value=25 Score=32.66 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred ccCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 945 RILEGLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 945 ~~~~g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
+.+.|..+|+-=-++..|.+++.+|+..|+.+..+... .....||++|+|-
T Consensus 3 kLLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-----------------------------~~~~eyDi~lTDn 53 (117)
T 2kx7_A 3 RLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-----------------------------LISQDYDIFLTDN 53 (117)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-----------------------------SSCCCCSEEEEES
T ss_pred ccccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-----------------------------CCCCcccEEEecC
Confidence 34678899999999999999999999999988776421 1245799999994
Q ss_pred CCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCH-HHHHHHHHHHhhc
Q 001298 1025 QMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDS-ERMVSTILRLTKN 1095 (1105)
Q Consensus 1025 ~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~-~~L~~~I~~l~~~ 1095 (1105)
|. ...-+++.|++.... ++.=...|+.-.|++ +.|..+|.-++++
T Consensus 54 --p~------------------~~~~~tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLIEq 99 (117)
T 2kx7_A 54 --PS------------------NLTASGLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLIEV 99 (117)
T ss_dssp --GG------------------GCSSSEEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHHHH
T ss_pred --cc------------------ccCcCeEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHHHH
Confidence 21 123467888875432 222245566666765 5677788777654
No 319
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=42.55 E-value=1.6e+02 Score=32.08 Aligned_cols=58 Identities=26% Similarity=0.462 Sum_probs=41.0
Q ss_pred HHHHHHHHccccccCCCCcceE--EEeccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhhc
Q 001298 1032 YEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~ 1095 (1105)
+++++++++. .++||| +-.+-...++..+++++|+|.++. |--++......+...++.
T Consensus 196 ~~ll~~i~~~------~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKL------KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHH------TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh------cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 5677777753 237776 556666899999999999999986 555666666666555443
No 320
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=41.88 E-value=1.5e+02 Score=29.68 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=68.1
Q ss_pred EEEeecChhhHHHHHHHHHhcCceeeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCCcEEE
Q 001298 703 VVLATVGSMERMIISQWLRKKKVSTLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDPVYVV 782 (1105)
Q Consensus 703 v~~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 782 (1105)
+++.++....+..+...+...|..+..+.+...+...+.. .+..++
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~----------------------------------~~~dlv 48 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI----------------------------------RNYDLV 48 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT----------------------------------SCCSEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc----------------------------------CCCCEE
Confidence 5667777778888888888888776666555444332211 122333
Q ss_pred EEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCchhhHhhhhcCCcEEEecCC-ChhHHHHHHHHHHhc
Q 001298 783 VIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTSPIKTELSREGQNIVVTKPL-YKGKMIQLLETAVRG 856 (1105)
Q Consensus 783 ~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~-~~~~l~~~l~~~~~~ 856 (1105)
+ ++++++..+...++. . .....+++..............+.|.+.++.||+ ....+...+..+..+
T Consensus 49 i----lp~~~g~~~~~~lr~---~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 49 M----VSDKNALSFVSRIKE---K-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp E----ECCTTHHHHHHHHHH---H-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred E----eCCCCHHHHHHHHHh---C-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 3 666666443333332 2 2122233333334444555666789999999999 999999998887653
No 321
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=41.67 E-value=11 Score=35.79 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=25.0
Q ss_pred CcccccccccccCCCCCCCcEEEEEEeeccchhH
Q 001298 214 NSPLLSAALPVWDPTTSNKSIVAVVGVTTALSSV 247 (1105)
Q Consensus 214 ~~~~~~~~~pv~~~~~~~~~~~~v~gv~~~~~~i 247 (1105)
..+.+.++.||++. +|+++||+.|...+..+
T Consensus 98 ~g~~~~~~~PV~~~---~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 98 LGSSLRGKSPIQDA---TGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp TEEEEEEEEEEECT---TCCEEEEEEEEEEGGGC
T ss_pred ceeeEEEEEeEECC---CCCEEEEEEEEEEhHHh
Confidence 45788888899985 78999999998776543
No 322
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=41.46 E-value=94 Score=32.77 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE------cCCCHHHHHHH
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERMVST 1088 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L~~~ 1088 (1105)
+++++++++. .++|||+..+-.+.++..+++++|+|+++. .|++.+++.+.
T Consensus 189 ~~~i~~l~~~------~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 189 TEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp HHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred HHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 8889999864 258999999999999999999999999876 35555555443
No 323
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=40.55 E-value=1e+02 Score=33.54 Aligned_cols=93 Identities=22% Similarity=0.148 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhcCC---EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 001298 951 RILLAEDTPLIQ----IVACKILEKVGA---TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD 1023 (1105)
Q Consensus 951 ~ILIvdD~~~~~----~~l~~~L~~~g~---~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD 1023 (1105)
-+||.||+.... ..+...-+..+. --..+.+-+|+.+++.. ..|+|.+|
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a------------------------GaD~I~ld 223 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA------------------------GADLILLD 223 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH------------------------TCSEEEEE
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------------------------CCCEEEEC
Confidence 367777766432 223333333443 23467899999888753 58999999
Q ss_pred CCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1024 CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1024 i~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
-.-| +.++++.+.-. .++|+++ ++.-..+......++|+|.+-+
T Consensus 224 ~~~~-----~~~k~av~~v~----~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 224 NFPL-----EALREAVRRVG----GRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SCCH-----HHHHHHHHHHT----TSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCCH-----HHHHHHHHHhC----CCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7433 33444443221 2578877 5667788899999999987653
No 324
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=40.41 E-value=1.9e+02 Score=31.68 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHHhcCCEEEE-ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC----C---CCHHHHHHHH
Q 001298 967 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----K---MDGYEATIEI 1038 (1105)
Q Consensus 967 ~~L~~~g~~v~~-a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP----~---mdG~e~~~~I 1038 (1105)
..+++.|..+.. +.+..+|..+... ..|.|+.+-.-+ + ...+++++++
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~------------------------GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v 167 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL------------------------GVDAVSIDGFECAGHPGEDDIPGLVLLPAA 167 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT------------------------TCSEEEEECTTCSBCCCSSCCCHHHHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc------------------------CCCEEEEECCCCCcCCCCccccHHHHHHHH
Confidence 445556766544 6788887766542 578888753211 1 2567888888
Q ss_pred HccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1039 RKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1039 R~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++. .++|||+--+-.+.++..+++++|+|....
T Consensus 168 ~~~------~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 168 ANR------LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp HTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 863 258999988888899999999999999875
No 325
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=40.40 E-value=3.4e+02 Score=30.31 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=61.0
Q ss_pred CCEEEEEeCC----HHHHHHHHHHHHhc-CCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAEDT----PLIQIVACKILEKV-GATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvdD~----~~~~~~l~~~L~~~-g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|..++.+|-. ....+.+..+=+.. +..|.. +.+.++|..+.+. ..|.|.
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a------------------------GaD~I~ 167 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC------------------------GADIIK 167 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT------------------------TCSEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc------------------------CCCEEE
Confidence 4567777622 22233343333332 555554 7888888887753 589888
Q ss_pred EcCCCCCC------------CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1022 MDCQMPKM------------DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1022 mDi~MP~m------------dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..+. |+. ..+++++++++. .. |||+--+-....+..+++.+|||....
T Consensus 168 Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~------~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 168 AGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRA------DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp ECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTS------SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EcCC-CCcCccccccCCccHHHHHHHHHHHHh------CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 7532 322 124444444321 12 999988888999999999999998765
No 326
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=40.14 E-value=1.9e+02 Score=33.89 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEc-------------
Q 001298 960 LIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMD------------- 1023 (1105)
Q Consensus 960 ~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmD------------- 1023 (1105)
...+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|..-
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a------------------------Gad~I~vg~~~G~~~~t~~~~ 337 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA------------------------GVDGLRVGMGCGSICITQEVM 337 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------------------TCSEEEECSSCSCCBTTBCCC
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc------------------------CCCEEEECCCCCccccccccc
Confidence 3345555555554 55554 36777777766643 46666552
Q ss_pred -CCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1024 -CQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1024 -i~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..+|....++.++++++. ..+|||+--+-....+..+++.+|||....
T Consensus 338 ~~g~~~~~~~~~~~~~~~~------~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 338 ACGRPQGTAVYKVAEYARR------FGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp SCCCCHHHHHHHHHHHHGG------GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCccchhHHHHHHHHHhh------CCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 223333346677777653 249999999988999999999999998754
No 327
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=39.42 E-value=45 Score=34.11 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred HHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHHHHHccccc
Q 001298 967 KILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-KMDGYEATIEIRKSESE 1044 (1105)
Q Consensus 967 ~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~ 1044 (1105)
...++.|..+ ..+.+..|+..... ...|+|++ .| ...|.+.++++++..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------------------~G~d~v~v---~~t~~~g~~~~~~l~~~~~- 146 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------------------AGAQALKI---FPSSAFGPQYIKALKAVLP- 146 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------------------TTCSEEEE---TTHHHHCHHHHHHHHTTSC-
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------------------CCCCEEEE---ecCCCCCHHHHHHHHHhcc-
Confidence 4455567653 23788888876653 25898885 22 1236788888886421
Q ss_pred cCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1045 HGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1045 ~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.++||++..+-. .++..+++++|++.+..=
T Consensus 147 ---~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 147 ---SDIAVFAVGGVT-PENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp ---TTCEEEEESSCC-TTTHHHHHHHTCSEEEEC
T ss_pred ---CCCeEEEeCCCC-HHHHHHHHHcCCCEEEEC
Confidence 158999988876 788899999999999853
No 328
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=39.31 E-value=30 Score=37.40 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred CHHHHHHHHHccccccCCCCcceEEEec------cCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHH
Q 001298 1030 DGYEATIEIRKSESEHGARNIPIVALTA------HAMNADEKKCLGVGMNAYLTKPIDSERMVSTI 1089 (1105)
Q Consensus 1030 dG~e~~~~IR~~~~~~~~~~ipIIalTa------~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I 1089 (1105)
+.+++.+++|+.. .++|||++|= ...+....+|.++|+|+.|.=-+.+++....+
T Consensus 83 ~~~~~v~~~r~~~-----~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~ 143 (271)
T 3nav_A 83 ICFELIAQIRARN-----PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFV 143 (271)
T ss_dssp HHHHHHHHHHHHC-----TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 4689999999641 3589999973 23456788999999999999777776644433
No 329
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=36.42 E-value=1.4e+02 Score=30.47 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
+++.++++++. .++|||+..+-.+.++..+++++|+|.++.=
T Consensus 163 ~~~~~~~~~~~------~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQS------VDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHHH------CCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHhh------CCCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 46778888753 2489999988889999999999999998863
No 330
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=36.27 E-value=2e+02 Score=29.28 Aligned_cols=97 Identities=8% Similarity=0.006 Sum_probs=64.8
Q ss_pred cCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCC--CHHHHHHHHHccccccCCC
Q 001298 972 VGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKM--DGYEATIEIRKSESEHGAR 1048 (1105)
Q Consensus 972 ~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~~~~~~~ 1048 (1105)
.|..+. -+.+..|+..+.+. ..|+|-+ -|.. -|.+.++.+|... +
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~------------------------Gad~v~~---fpa~~~gG~~~lk~l~~~~-----~ 150 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL------------------------GLSALKF---FPAEPFQGVRVLRAYAEVF-----P 150 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT------------------------TCCEEEE---TTTTTTTHHHHHHHHHHHC-----T
T ss_pred hCCCEEecCCCHHHHHHHHHC------------------------CCCEEEE---ecCccccCHHHHHHHHhhC-----C
Confidence 454333 47888898887752 5787766 4532 3889999998742 3
Q ss_pred CcceEEEeccCCHHHHHHHHhcCCCEEEEcC----CCHHHHHHHHHHHhhcCCCCCC
Q 001298 1049 NIPIVALTAHAMNADEKKCLGVGMNAYLTKP----IDSERMVSTILRLTKNMPSEAT 1101 (1105)
Q Consensus 1049 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP----i~~~~L~~~I~~l~~~~~~~~~ 1101 (1105)
++|+++.-+-. .++...++++|++.+..=- -+++++.++.+++.+...++++
T Consensus 151 ~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~~d~~~i~~~a~~~~~~~~~~~~ 206 (207)
T 2yw3_A 151 EVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAKALLSPQAP 206 (207)
T ss_dssp TCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGSSCHHHHHHHHHHHHHHC-----
T ss_pred CCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhCCCHHHHHHHHHHHHHHhcccCC
Confidence 68999766554 6788999999998765321 4566788888888777665554
No 331
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=35.90 E-value=3.5e+02 Score=31.53 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
|..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a------------------------GaD~I~ 298 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------------------GVSAVK 298 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH------------------------TCSEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh------------------------CCCEEE
Confidence 45677776 3444455666665555 33333 36777777776653 578888
Q ss_pred EcCCCCC------------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1022 MDCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1022 mDi~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.... |+ ...++++.++.+.... ..+|||+--+-....+..+++.+|||..+.=
T Consensus 299 Vg~g-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~---~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 299 VGIG-PGSICTTRIVTGVGVPQITAIADAAGVANE---YGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp ECSS-CCTTBCHHHHHCCCCCHHHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ECCC-CCcCcccccccCCCccHHHHHHHHHHHhcc---CCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 6321 11 1235566666653222 2499999888889999999999999998763
No 332
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=35.04 E-value=1.7e+02 Score=32.44 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=68.0
Q ss_pred cEEEEeecChhhHHHHHHHHHhc-Cce-eeecccchhhHHHHHHhcCCCCCCCCCCCCCCCCCcchhHHhhhhhhhccCC
Q 001298 701 TVVVLATVGSMERMIISQWLRKK-KVS-TLETSEWHGLTQILRELLDPISPVSSNGFDAPYSSREPLKAEMTNIKALIDP 778 (1105)
Q Consensus 701 ~~v~~~~~~~~~r~~~~~~~~~~-g~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1105)
..+++.++....+..+..++... +.. ...+.+...+...+.. ..
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~----------------------------------~~ 49 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK----------------------------------FN 49 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH----------------------------------HC
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc----------------------------------cC
Confidence 35677888888888899998875 665 3344444443333221 12
Q ss_pred cEEEEEEeeccccChhHHHHHhhhhhhhhccceeEEeeccCCCc--hhhHhhhhcCCcEEEecCCCh---------hHHH
Q 001298 779 VYVVVIDIALLDLSSDLWREQLNSLDIFHRKAMFAWVVNHQTTS--PIKTELSREGQNIVVTKPLYK---------GKMI 847 (1105)
Q Consensus 779 ~~~v~id~~l~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kP~~~---------~~l~ 847 (1105)
..++++|+.++++++..+.+.++. ... ..+ ++....+.. ....+..+.|..-++.||+.. ..+.
T Consensus 50 pDlVllDi~mp~~dGlell~~l~~---~~p-~pV-IvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~ 124 (349)
T 1a2o_A 50 PDVLTLDVEMPRMDGLDFLEKLMR---LRP-MPV-VMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIA 124 (349)
T ss_dssp CSEEEEECCCSSSCHHHHHHHHHH---SSC-CCE-EEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh---cCC-CcE-EEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHH
Confidence 468899999999887544333332 111 222 223222221 224455678899999999973 5555
Q ss_pred HHHHHHHh
Q 001298 848 QLLETAVR 855 (1105)
Q Consensus 848 ~~l~~~~~ 855 (1105)
..+..+..
T Consensus 125 ~~I~~~~~ 132 (349)
T 1a2o_A 125 EKVRTAAR 132 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 333
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=34.84 E-value=1.2e+02 Score=31.32 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=48.5
Q ss_pred CccEE-EEcCCCCCC---CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE------cCCCHHHH
Q 001298 1016 RFDLI-LMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1085 (1105)
Q Consensus 1016 ~~DlI-lmDi~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L 1085 (1105)
..|.| ++++.-..+ -.++.++++++. .++||++-.+-...++..+++++|+|.++. .+.+.+++
T Consensus 167 G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~------~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 167 GAGEILLTSIDRDGTGLGYDVELIRRVADS------VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHHHH------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCEEEEecccCCCCcCcCCHHHHHHHHHh------cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHH
Confidence 35655 555543221 136788888864 258999988888888999999999999875 55666666
Q ss_pred HHHHH
Q 001298 1086 VSTIL 1090 (1105)
Q Consensus 1086 ~~~I~ 1090 (1105)
.+.+.
T Consensus 241 ~~~l~ 245 (253)
T 1h5y_A 241 KRYLK 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 334
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=34.48 E-value=1.8e+02 Score=31.88 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHhcCCEEEE-ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-----CCCHHHHHHHHHc
Q 001298 967 KILEKVGATVSV-VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP-----KMDGYEATIEIRK 1040 (1105)
Q Consensus 967 ~~L~~~g~~v~~-a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP-----~mdG~e~~~~IR~ 1040 (1105)
..+++.|..+.. +.+.++|..+.+. ..|.|+.+-.-+ ....+++++++++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~------------------------GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~ 173 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA------------------------GADAVIAEGMESGGHIGEVTTFVLVNKVSR 173 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT------------------------TCSCEEEECTTSSEECCSSCHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc------------------------CCCEEEEECCCCCccCCCccHHHHHHHHHH
Confidence 445556766554 6777777665532 478777753211 1246788888886
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
. .++|||+--+-.+.++..+++++|+|.+..
T Consensus 174 ~------~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 174 S------VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp H------CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred H------cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3 248999988888899999999999999875
No 335
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=34.15 E-value=2.5e+02 Score=31.78 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC---------C
Q 001298 960 LIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM---------P 1027 (1105)
Q Consensus 960 ~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M---------P 1027 (1105)
...+.+..+-+.. +..|. .+.+.++|..+.+ ...|.|..-... +
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~------------------------~Gad~I~vg~~~G~~~~~~~~~ 235 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS------------------------VGADCLKVGIGPGSICTTRIVA 235 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT------------------------TTCSEEEECSSCSTTSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh------------------------cCCCEEEECCCCCcCcCccccC
Confidence 3444444444444 55555 3667776665543 258888872100 0
Q ss_pred --CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1028 --KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1028 --~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+.-.+++++.+++.... .++|||+-.+-.+.++..+++.+|||....
T Consensus 236 ~~g~p~~~~l~~v~~~~~~---~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 236 GVGVPQITAICDVYEACNN---TNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CCCCCHHHHHHHHHHHHTT---SSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCcchHHHHHHHHHHHhh---cCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 12246667777653221 359999999989999999999999999876
No 336
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=33.96 E-value=71 Score=33.42 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=49.5
Q ss_pred Ccc-EEEEcCCCCCC-C--HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE------cCCCHHHH
Q 001298 1016 RFD-LILMDCQMPKM-D--GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT------KPIDSERM 1085 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~m-d--G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KPi~~~~L 1085 (1105)
.++ +++++..-..+ . .++.++++++. .++|||+-.+-...++..+++++|+|+++. .|+++++.
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~ 237 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVREL 237 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG------CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHH
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHH
Confidence 456 55576642221 2 28889999863 258999999888889999999999999876 45676666
Q ss_pred HHHHH
Q 001298 1086 VSTIL 1090 (1105)
Q Consensus 1086 ~~~I~ 1090 (1105)
...+.
T Consensus 238 ~~~l~ 242 (253)
T 1thf_D 238 KEYLK 242 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 337
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.41 E-value=92 Score=30.92 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHh--cCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 001298 948 EGLRILLAEDTPLIQIVACKILEK--VGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ 1025 (1105)
Q Consensus 948 ~g~~ILIvdD~~~~~~~l~~~L~~--~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~ 1025 (1105)
.|.+||++|-|+.. -+...+.. .++.+..+.. ....+.+... ...||+||+|+-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l---------------------~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKD---------------------LADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHH---------------------TTTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHh---------------------cCCCCEEEEECC
Confidence 46799999988643 23444432 3455555544 2233333322 236999999983
No 338
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=33.22 E-value=1.4e+02 Score=30.54 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=39.0
Q ss_pred CccEEEEcCCCC--------CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMP--------KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+|.|++..-.| ..-|++.++++++.. .++||++.-+-. .++..+++++|+|.+..
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~-----~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-----ISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-----CCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 589888621111 123688888888642 138998877666 77888899999999865
No 339
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=32.94 E-value=60 Score=33.88 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=47.7
Q ss_pred Ccc-EEEEcCCCCCC---CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc---CCCEEEE------cCCCH
Q 001298 1016 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1082 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KPi~~ 1082 (1105)
.+| +++++..-..+ -.++.+++|++. ..+|||+-.+-...++..+++++ |+|.++. .|+++
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~ 232 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELLKNVCAA------TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTL 232 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHHHHHHHT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEeccCcccccCCCCHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCH
Confidence 466 56677652221 137889999863 25899999888888999999999 9999875 56666
Q ss_pred HHHHHHH
Q 001298 1083 ERMVSTI 1089 (1105)
Q Consensus 1083 ~~L~~~I 1089 (1105)
+++.+.+
T Consensus 233 ~~~~~~~ 239 (244)
T 1vzw_A 233 EEALEAT 239 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 340
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=32.81 E-value=4.4e+02 Score=29.15 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=64.6
Q ss_pred CEEEEEe----CCHHHHHHHHHHHHhc-CCEEE--EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 001298 950 LRILLAE----DTPLIQIVACKILEKV-GATVS--VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM 1022 (1105)
Q Consensus 950 ~~ILIvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm 1022 (1105)
..++.++ +.....+.++.+=+.. +..+. .+.+.++|..+.+. ..|.|..
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a------------------------GaD~I~v 188 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS------------------------GADIIKV 188 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT------------------------TCSEEEE
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh------------------------CCCEEEE
Confidence 3455554 3333444555444444 55443 47888888877753 5888866
Q ss_pred cCCCCC------------CCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE-EEcCC
Q 001298 1023 DCQMPK------------MDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY-LTKPI 1080 (1105)
Q Consensus 1023 Di~MP~------------mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-L~KPi 1080 (1105)
-. -|+ ..-++++..+++.... ..+|||+--+-.+..+..+++.+|||.. +-+||
T Consensus 189 ~~-g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~---~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 189 GI-GPGSVCTTRKKTGVGYPQLSAVMECADAAHG---LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp CS-SCSTTBCHHHHHCBCCCHHHHHHHHHHHHHH---TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CC-CCCcCcCccccCCCCccHHHHHHHHHHHHhh---cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 42 232 1234555566543221 2499999999999999999999999976 44665
No 341
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.32 E-value=67 Score=34.94 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=44.5
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCCCCC
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1102 (1105)
-++.+..|+..+ +..+|.++.++ .++..+++++|+|..+.-|++++.+...+..+-.+.+-+++|
T Consensus 183 ~~av~~ar~~~~-----~~~~IgVev~t-~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v~~~ipi~AsG 247 (286)
T 1x1o_A 183 GEAVRRAKARAP-----HYLKVEVEVRS-LEELEEALEAGADLILLDNFPLEALREAVRRVGGRVPLEASG 247 (286)
T ss_dssp HHHHHHHHHHSC-----TTSCEEEEESS-HHHHHHHHHHTCSEEEEESCCHHHHHHHHHHHTTSSCEEEES
T ss_pred HHHHHHHHHhCC-----CCCEEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEc
Confidence 346677776532 22345556654 777889999999999999999999988876653334434433
No 342
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.13 E-value=36 Score=36.63 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccC------CHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHA------MNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1091 (1105)
.++..+++|+.. .++||++++=.. .+....+|.++|+|+.+.-....++....+..
T Consensus 82 ~~~~v~~ir~~~-----~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~ 143 (267)
T 3vnd_A 82 CFDIITKVRAQH-----PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKA 143 (267)
T ss_dssp HHHHHHHHHHHC-----TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHH
Confidence 478888888631 358999997422 25667899999999999977777765544433
No 343
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=30.61 E-value=35 Score=37.02 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=41.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 949 GLRILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
+-++.+||-++.....++..++...-..+...|+.+++..+.. ...++|+||+|-
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------------------~~~~fdLVfiDP 167 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------------------PPEKRGLIFIDP 167 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------------------CTTSCEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------------------CCCCccEEEECC
Confidence 3589999999999999998887644344566788888876632 123699999995
No 344
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.47 E-value=84 Score=36.24 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=20.3
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHHhcCCEEEEECC
Q 001298 949 GLRILLAEDTP---LIQIVACKILEKVGATVSVVPD 981 (1105)
Q Consensus 949 g~~ILIvdD~~---~~~~~l~~~L~~~g~~v~~a~n 981 (1105)
|.+|++||-++ .....+...-...|..+..+..
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~ 164 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCS
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCC
Confidence 68999999986 2233333334456777766543
No 345
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=30.23 E-value=43 Score=35.91 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHHHccccccCCCCcceEEEecc------CCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAH------AMNADEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
+++.+++||+.. .++||++++-. ........|.++|+|.++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~~-----~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKH-----PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHC-----SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456678888631 24899988622 2256777899999999999888776655544433
No 346
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=30.07 E-value=75 Score=34.74 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCCCCC
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1102 (1105)
++.++.|+.. +..||.+-... .++..+++++|+|-.+.--+++++|.+++..+-.+..-+++|
T Consensus 196 ~Av~~ar~~~-----p~~kIeVEv~t--l~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~~~v~leaSG 258 (300)
T 3l0g_A 196 LAIQRLRKNL-----KNEYIAIECDN--ISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGKSVLEVSG 258 (300)
T ss_dssp HHHHHHHHHS-----SSCCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHhC-----CCCCEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhcCceEEEEEC
Confidence 5667777642 34788886654 578889999999999999999999999997765444444444
No 347
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=30.06 E-value=1.1e+02 Score=33.13 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC----CCCH----------H
Q 001298 968 ILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP----KMDG----------Y 1032 (1105)
Q Consensus 968 ~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP----~mdG----------~ 1032 (1105)
...++|. ++..+.|.+||..+... .+|+|... || +.-| -
T Consensus 158 ~A~~~gL~Ti~~v~~~eeA~amA~a------------------------gpDiI~~h--~glT~gglIG~~~avs~~~~~ 211 (286)
T 2p10_A 158 EAHKLDLLTTPYVFSPEDAVAMAKA------------------------GADILVCH--MGLTTGGAIGARSGKSMDDCV 211 (286)
T ss_dssp HHHHTTCEECCEECSHHHHHHHHHH------------------------TCSEEEEE--CSCC---------CCCHHHHH
T ss_pred HHHHCCCeEEEecCCHHHHHHHHHc------------------------CCCEEEEC--CCCCCCCcccCCCcccHHHhH
Confidence 3445674 67789999999988753 69999965 55 3333 2
Q ss_pred HHHHHHHccccccCCCCcceEEEe-ccCCHHHHHHHHhc--CCCEEEEc
Q 001298 1033 EATIEIRKSESEHGARNIPIVALT-AHAMNADEKKCLGV--GMNAYLTK 1078 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalT-a~~~~~~~~~~l~a--G~d~yL~K 1078 (1105)
|.++++.+..... .+++.|+.-. .-+..+|...+++. |+++|+.=
T Consensus 212 e~i~~i~~a~~~v-npdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 212 SLINECIEAARTI-RDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HHHHHHHHHHHHH-CSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 3333333221111 1333222222 33789999999999 99999974
No 348
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=29.66 E-value=2.3e+02 Score=31.78 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred CccEEEEcCC----CC-CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQ----MP-KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~----MP-~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|.+.-. +. ...-++++.++++.-. .++|||+-.+-.+.+|..+++.+|||.+..
T Consensus 246 Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~----~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQ----GRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTT----TSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCCCCccCCCcccHHHHHHHHHHHhC----CCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 4677766321 11 1134777888886421 259999999999999999999999999876
No 349
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=29.40 E-value=41 Score=34.16 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=42.4
Q ss_pred EcCCCCC--CCHHHHHHHHHccccccCCCCcceEE--EeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHh
Q 001298 1022 MDCQMPK--MDGYEATIEIRKSESEHGARNIPIVA--LTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLT 1093 (1105)
Q Consensus 1022 mDi~MP~--mdG~e~~~~IR~~~~~~~~~~ipIIa--lTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~ 1093 (1105)
.++++|- .+|.+..++||+.. ++.||++ .+.+--......+.++|+|....-+...++....+.+.+
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~~-----~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKAH-----PDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAA 99 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHHS-----TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred EEECcHHHHhhCHHHHHHHHHhC-----CCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHH
Confidence 6776663 46888999999742 2467775 443212334778999999999877766533333333333
No 350
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.94 E-value=65 Score=35.01 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=50.2
Q ss_pred ccEEEE-cCCCCCCCHH-HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1017 FDLILM-DCQMPKMDGY-EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1017 ~DlIlm-Di~MP~mdG~-e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
+|.|+. |-+.-...|+ ++.++.|+.. +..||.+-.. +.++..+++++|+|..+.-.+++++|.+.+..+-.
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~-----~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~~ 241 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLD-----SNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIARG 241 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHC-----TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTT
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhC-----CCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhcC
Confidence 344444 4333333333 5667777642 3467777443 33778899999999999999999999988876644
Q ss_pred cCCCCCCC
Q 001298 1095 NMPSEATG 1102 (1105)
Q Consensus 1095 ~~~~~~~~ 1102 (1105)
+..-+++|
T Consensus 242 ~v~ieaSG 249 (287)
T 3tqv_A 242 KVALEVSG 249 (287)
T ss_dssp TCEEEEES
T ss_pred CceEEEEC
Confidence 44444444
No 351
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.80 E-value=1.3e+02 Score=26.51 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=32.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHHHh
Q 001298 952 ILLAEDTPLIQIVACKILEKVGATVSVVPDGLQAVEALNRM 992 (1105)
Q Consensus 952 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~ 992 (1105)
.|+-|.+..-.+...+-.+..||+|..+.|.+||+..++..
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivref 120 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHH
Confidence 34455555556777888899999999999999999988754
No 352
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=28.27 E-value=87 Score=34.05 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=20.4
Q ss_pred CCCEEEEEeCCH---HHHHHHHHHHHhcCCEEEEE
Q 001298 948 EGLRILLAEDTP---LIQIVACKILEKVGATVSVV 979 (1105)
Q Consensus 948 ~g~~ILIvdD~~---~~~~~l~~~L~~~g~~v~~a 979 (1105)
.+.+|+++|-++ .....+....+..|..+...
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 356899999883 33444445555667776655
No 353
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=28.00 E-value=38 Score=32.42 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Q 001298 380 CILVIGCICILILTNGVSKEMKLRA 404 (1105)
Q Consensus 380 ~i~li~~~~~~~l~~~i~~~~~l~~ 404 (1105)
+++++++++.+++.+.+.++++...
T Consensus 67 ~~~~~~~~~~~~~~~~i~~pl~~l~ 91 (163)
T 2f95_B 67 LLGINLGLVAATLGGDTAASLSTLA 91 (163)
T ss_dssp HHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666654433
No 354
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=27.97 E-value=3e+02 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred CccEEEEcCCCC-----CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMP-----KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|+.+-.-+ ....+++++++++. .++|||+--+-.+.++..+++++|+|....
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~------~~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATA------ISIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 478787753211 13457888998864 248999988888899999999999998764
No 355
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=27.87 E-value=2.1e+02 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1031 GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1031 G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+++.++++++. ++||++.-+-.+.++..+++++|+|.++.
T Consensus 175 ~~~~i~~~~~~-------~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCKA-------GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHHT-------TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 36888888752 48999988888899999999999999875
No 356
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=27.67 E-value=3.6e+02 Score=28.12 Aligned_cols=107 Identities=8% Similarity=0.035 Sum_probs=66.3
Q ss_pred EEEeCCHHHHHHHHHHHHhcCC-EEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH
Q 001298 953 LLAEDTPLIQIVACKILEKVGA-TVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG 1031 (1105)
Q Consensus 953 LIvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG 1031 (1105)
|+.+|.- .+ +...|++.+. -|....+.+++++..+...+ ...++|=..+.-| ++
T Consensus 18 ~~~~~~m--~~-~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~--------------------gGi~~iEvt~~t~--~a 72 (232)
T 4e38_A 18 LYFQSMM--ST-INNQLKALKVIPVIAIDNAEDIIPLGKVLAE--------------------NGLPAAEITFRSD--AA 72 (232)
T ss_dssp --CCCCH--HH-HHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--------------------TTCCEEEEETTST--TH
T ss_pred hHHHHHH--HH-HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--------------------CCCCEEEEeCCCC--CH
Confidence 5555552 22 3344555553 45667788889888875432 3577776666544 68
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILR 1091 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~ 1091 (1105)
.|+.++||+.. +. .+|.--.--..++...|.++|++-.++ |-...++....++
T Consensus 73 ~e~I~~l~~~~-----~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvs-P~~~~~vi~~~~~ 125 (232)
T 4e38_A 73 VEAIRLLRQAQ-----PE-MLIGAGTILNGEQALAAKEAGATFVVS-PGFNPNTVRACQE 125 (232)
T ss_dssp HHHHHHHHHHC-----TT-CEEEEECCCSHHHHHHHHHHTCSEEEC-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CC-CEEeECCcCCHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHH
Confidence 99999999742 22 345444455688888999999976554 6555555555443
No 357
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=27.36 E-value=1.3e+02 Score=31.80 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC--CCC--------------------HHHHHHHH
Q 001298 981 DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMP--KMD--------------------GYEATIEI 1038 (1105)
Q Consensus 981 ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP--~md--------------------G~e~~~~I 1038 (1105)
+-.+.++.++..... ..|.|-++.-.+ .|| +++.+++|
T Consensus 30 ~~~~~~~~~~~l~~~--------------------Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~i 89 (262)
T 1rd5_A 30 DLATTAEALRLLDGC--------------------GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREV 89 (262)
T ss_dssp CHHHHHHHHHHHHHT--------------------TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------------------CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q ss_pred HccccccCCCCcceEEEeccCCHH--HHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Q 001298 1039 RKSESEHGARNIPIVALTAHAMNA--DEKKCLGVGMNAYLTKPIDSERMVSTILRL 1092 (1105)
Q Consensus 1039 R~~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l 1092 (1105)
|+. .++|+++++-..... ...+|.++|+|.++.-....+++...+..+
T Consensus 90 r~~------~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 90 TPE------LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp GGG------CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred Hhc------CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 358
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=26.84 E-value=52 Score=35.59 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=43.3
Q ss_pred HHHHHHHHccccccCCCCcceEEE--eccCCHHHHHHHHhcCCCEEEE-----cCCCHHHHHHHHHHHhhc
Q 001298 1032 YEATIEIRKSESEHGARNIPIVAL--TAHAMNADEKKCLGVGMNAYLT-----KPIDSERMVSTILRLTKN 1095 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIal--Ta~~~~~~~~~~l~aG~d~yL~-----KPi~~~~L~~~I~~l~~~ 1095 (1105)
|+++++|++. .++|||++ -+-.+.++..++++.|+|+.+. |--++.....++...+..
T Consensus 187 ~elI~~Ike~------~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 187 VSLLKDVLEK------GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp HHHHHHHHHH------TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc------cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 8999999874 35899887 3345789999999999999986 334566666666665543
No 359
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=26.65 E-value=96 Score=31.64 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=40.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.||+| . -||+.-- ++.+++|+. ..+|||+=-.-.+.++..+|+++||+..-+
T Consensus 127 ~PD~i--E-iLPGi~p-~iI~~i~~~------~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 127 QPDCI--E-LLPGIIP-EQVQKMTQK------LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCSEE--E-EECTTCH-HHHHHHHHH------HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEE--E-ECCchhH-HHHHHHHHh------cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 68987 2 2576553 778888864 248999988888999999999999998765
No 360
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=26.62 E-value=1.1e+02 Score=31.75 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCCH---HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1019 LILMDCQMPKMDG---YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1019 lIlmDi~MP~mdG---~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
+.+.|.....+.. ++.+++|++. ..+||++...-.+.++..+++++|+|..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~------~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER------VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh------CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 5566876543332 4556667642 359999999999999999999999999876
No 361
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=26.03 E-value=3.8e+02 Score=29.71 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=54.7
Q ss_pred HhcCCEEE-EECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCC---------CC-----C--CCHH
Q 001298 970 EKVGATVS-VVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQ---------MP-----K--MDGY 1032 (1105)
Q Consensus 970 ~~~g~~v~-~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~---------MP-----~--mdG~ 1032 (1105)
.+.|..+. .+.+.++|..+.+ ...|.|+.+-. .| . .+.+
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~------------------------~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~ 197 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEA------------------------AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLL 197 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHH------------------------TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHH
T ss_pred HHCCCeEEEECCCHHHHHHHHH------------------------cCCCEEEEeCCCcCCcCCCcccccccccccccHH
Confidence 33566543 4677777765553 25888888531 11 1 3448
Q ss_pred HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1033 EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1033 e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
++++++++. .++|||+.-+-.+.++..+++++|+|.+..
T Consensus 198 ~~l~~i~~~------~~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 198 SLLAQVREA------VDIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHH------CSSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHh------cCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 889998863 258999988887899999999999998774
No 362
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=25.98 E-value=6.2e+02 Score=26.88 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=59.9
Q ss_pred HHHHHHhcCCEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEE---cCCCCCCCHHHHHHHHHc
Q 001298 965 ACKILEKVGATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILM---DCQMPKMDGYEATIEIRK 1040 (1105)
Q Consensus 965 l~~~L~~~g~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlm---Di~MP~mdG~e~~~~IR~ 1040 (1105)
+...-..+|.++ +.+.|.+|.-.++.. ..++|=. |+.--..| ++.+.+++.
T Consensus 145 l~~~A~~lGl~~LvEVh~~~El~rAl~~------------------------~a~iIGINNRnL~tf~vd-l~~t~~L~~ 199 (258)
T 4a29_A 145 LLEYARSYGMEPLILINDENDLDIALRI------------------------GARFIGIMSRDFETGEIN-KENQRKLIS 199 (258)
T ss_dssp HHHHHHHTTCCCEEEESSHHHHHHHHHT------------------------TCSEEEECSBCTTTCCBC-HHHHHHHHT
T ss_pred HHHHHHHHhHHHHHhcchHHHHHHHhcC------------------------CCcEEEEeCCCccccccC-HHHHHHHHh
Confidence 444445688764 568999997777652 4566533 22222333 677778876
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEc
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTK 1078 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1078 (1105)
.-+ ..+.+|+-++-.+.++..++.++|+|+||.-
T Consensus 200 ~ip----~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 200 MIP----SNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TSC----TTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred hCC----CCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 543 3477899999999999999999999999984
No 363
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=25.88 E-value=5.1e+02 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1028 KMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1028 ~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.....++++++++.. .++|||+..+-.+.++..+++.+|||.++.
T Consensus 235 g~~~~~~l~~v~~~~-----~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSEF-----PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHHC-----TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHhc-----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345678888887632 359999999999999999999999999875
No 364
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.85 E-value=92 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhh
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTK 1094 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~ 1094 (1105)
-++.++.|+..+ ...+|.+ ... +.++..+++++|+|..+.-+++++++...+..+-.
T Consensus 180 ~~av~~ar~~~~----~~~~I~V-EV~-tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 180 ERAVQEVRKIIP----FTTKIEV-EVE-NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp HHHHHHHHTTSC----TTSCEEE-EES-SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCceEEE-EeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 456777776532 1245555 444 36788899999999999999999999988877644
No 365
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=25.67 E-value=52 Score=35.22 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=47.7
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc--CCCEEEE--------cC-CCH
Q 001298 1017 FDLILMDCQMPKM-DG--YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV--GMNAYLT--------KP-IDS 1082 (1105)
Q Consensus 1017 ~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a--G~d~yL~--------KP-i~~ 1082 (1105)
=.++++|+.--+| .| +|+++++++..+. ...+|||+--+-.+.++..++++. |+++.+. .| +.+
T Consensus 172 ~~il~t~i~~dG~~~G~d~eli~~l~~~~~~--~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~ 249 (260)
T 2agk_A 172 NEFLIHAADVEGLCGGIDELLVSKLFEWTKD--YDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKF 249 (260)
T ss_dssp SEEEEEC-------CCCCHHHHHHHHHHHTT--CSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCH
T ss_pred CEEEEEeeccccCcCCCCHHHHHHHHHhhcc--cCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCH
Confidence 3467778754333 23 7899999864210 015899998888999999999988 9988543 44 888
Q ss_pred HHHHHHHH
Q 001298 1083 ERMVSTIL 1090 (1105)
Q Consensus 1083 ~~L~~~I~ 1090 (1105)
+++.+.++
T Consensus 250 ~~~~~~~~ 257 (260)
T 2agk_A 250 EDCCRWNE 257 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776553
No 366
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.52 E-value=94 Score=32.79 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.1
Q ss_pred cc-EEEEcCCCCCCC---HHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1017 FD-LILMDCQMPKMD---GYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1017 ~D-lIlmDi~MP~md---G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.| +.+.|....... -++.+++|++. ..+||++...-.+.++..+++++|+|..+.
T Consensus 44 a~~i~v~d~~~~~~~~g~~~~~i~~i~~~------~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 44 AGEILLTSIDRDGTKSGYDTEMIRFVRPL------TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp CSEEEEEETTTSSCSSCCCHHHHHHHGGG------CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred CCEEEEEecCcccCCCcccHHHHHHHHHh------cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 44 455776543221 17888888853 258999988878888899999999999876
No 367
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=25.49 E-value=83 Score=34.72 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHhhcCCCCCCC
Q 001298 1032 YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPIDSERMVSTILRLTKNMPSEATG 1102 (1105)
Q Consensus 1032 ~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi~~~~L~~~I~~l~~~~~~~~~~ 1102 (1105)
-++.++.|+.. ++.||++.... .++..+++++|+|..+.-.+++++|..+++.+-.+..-+++|
T Consensus 219 ~~Av~~ar~~~-----p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l~~~v~ieaSG 282 (320)
T 3paj_A 219 RQAISTAKQLN-----PGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKINAGRAALENSG 282 (320)
T ss_dssp HHHHHHHHHHS-----TTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHHhC-----CCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCeEEEEC
Confidence 36777777653 34578776654 467788999999999999999999998886643333333333
No 368
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=25.28 E-value=1.3e+02 Score=30.51 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=47.0
Q ss_pred CccEEEEcCCCCCCCHH-------HHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE-----cCCCHH
Q 001298 1016 RFDLILMDCQMPKMDGY-------EATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT-----KPIDSE 1083 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KPi~~~ 1083 (1105)
..|.|+.+...|+.+|. +-.+++|+.....+ .++||++ ++--..++..++.++|+|.++. +.-++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~i~v-~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~ 208 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKG-LSFDIEV-DGGVDNKTIRACYEAGANVFVAGSYLFKASDLV 208 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTT-CCCEEEE-ESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcC-CCceEEE-ECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence 47899988877776662 44566665432111 2467665 4444467788899999999876 445555
Q ss_pred HHHHHHHHH
Q 001298 1084 RMVSTILRL 1092 (1105)
Q Consensus 1084 ~L~~~I~~l 1092 (1105)
+-...+++.
T Consensus 209 ~a~~~~~~~ 217 (220)
T 2fli_A 209 SQVQTLRTA 217 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 369
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=25.11 E-value=2e+02 Score=27.19 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=46.0
Q ss_pred CccEEEEcCCCCCCCH------------------HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDG------------------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG------------------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+.+|+.|+.=--.++ .++++++|+. .++++++|+.........+-..|.+.|+.
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKM-------GITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTT-------TCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHC-------CCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 4788999987544431 3677777742 37899999988877777777889999986
Q ss_pred cCCCHHHHHHHHH
Q 001298 1078 KPIDSERMVSTIL 1090 (1105)
Q Consensus 1078 KPi~~~~L~~~I~ 1090 (1105)
.+-...+....+.
T Consensus 81 ~~kp~~~~~~~~~ 93 (162)
T 2p9j_A 81 GSYKKLEIYEKIK 93 (162)
T ss_dssp CC--CHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5544444444333
No 370
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=24.00 E-value=5.6e+02 Score=27.02 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=50.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC-CHHHHHHHHHHH
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI-DSERMVSTILRL 1092 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi-~~~~L~~~I~~l 1092 (1105)
.+|.|++|++=-..+--.+...++..... ...++|=+-+ .+..+..+++++|++..+.-=+ +.+++...+..+
T Consensus 37 g~D~vilDlEhav~~~~k~~~~l~a~~~~---~~~~~VRVn~-~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 37 GLDYFIVDCEHAAYTFREINHLVSVAKNA---GVSVLVRIPQ-VDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp TCSEEEEESSSSCCCHHHHHHHHHHHHHH---TCEEEEECSS-CCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred CcCEEEEeccCCCCCHHHHHHHHHHHhhc---CCeEEEEeCC-CCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 69999999998888877777777664321 2234555544 4567899999999998766334 566666555443
No 371
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=23.70 E-value=1.6e+02 Score=34.56 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=42.6
Q ss_pred CccEEEEcCCCCCCCH-HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDG-YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
.+|+|.+|...|...+ .+++++||+.. +++||++-+ -...+....+.++|+|....
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~-----p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAY-----PHLEIIGGN-VATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHC-----TTCCEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHC-----CCceEEEcc-cCcHHHHHHHHHhCCCEEEE
Confidence 6999999998876543 57888888742 357888732 34567788899999999986
No 372
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=23.14 E-value=1.1e+02 Score=31.93 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=42.5
Q ss_pred CccEEEEcC---CC-CCC-CHHHHHHHHHccccccCCCCcceE--EEeccCCHHHHHHHHhcCCCEEEEcCC--CHHHHH
Q 001298 1016 RFDLILMDC---QM-PKM-DGYEATIEIRKSESEHGARNIPIV--ALTAHAMNADEKKCLGVGMNAYLTKPI--DSERMV 1086 (1105)
Q Consensus 1016 ~~DlIlmDi---~M-P~m-dG~e~~~~IR~~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~KPi--~~~~L~ 1086 (1105)
..|+|=.|+ .. |.+ .|.+.+++||+.. +.|+. .++.+ -......|.++|+|....-.. ..+...
T Consensus 30 Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~------~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~ 102 (230)
T 1tqj_A 30 GADWIHVDVMDGRFVPNITIGPLIVDAIRPLT------KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLH 102 (230)
T ss_dssp TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC------CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHH
T ss_pred CCCEEEEEEEecCCCcchhhhHHHHHHHHhhc------CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHH
Confidence 355554444 21 333 3679999999753 24555 66643 344677899999999977655 334444
Q ss_pred HHHHHH
Q 001298 1087 STILRL 1092 (1105)
Q Consensus 1087 ~~I~~l 1092 (1105)
..++.+
T Consensus 103 ~~~~~i 108 (230)
T 1tqj_A 103 RTLCQI 108 (230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 373
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=23.09 E-value=1.5e+02 Score=30.96 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=65.8
Q ss_pred HHHHHHhcCCEEEE--ECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC----CC-CCHHHHHHH
Q 001298 965 ACKILEKVGATVSV--VPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQM----PK-MDGYEATIE 1037 (1105)
Q Consensus 965 l~~~L~~~g~~v~~--a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~M----P~-mdG~e~~~~ 1037 (1105)
....|++.|+.+.. +..|...+..+.. -+||.|=+|-.+ .. .....+++.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~-----------------------l~~d~iKiD~~~v~~~~~~~~~~~~~~~ 200 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTR-----------------------LPFDTLKIDRYFVRTMGNNAGSAKIVRS 200 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHH-----------------------SCCCEEEECHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-----------------------CCCCEEEECHHHHhhhhcCchHHHHHHH
Confidence 34567788998765 4566677777765 379999999532 11 123445555
Q ss_pred HHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEE----EEcCCCHHHHHHHHHH
Q 001298 1038 IRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAY----LTKPIDSERMVSTILR 1091 (1105)
Q Consensus 1038 IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y----L~KPi~~~~L~~~I~~ 1091 (1105)
|...... ..+.+| ..+-.+.++...+.+.|+|.+ +.||...+++...+..
T Consensus 201 i~~~a~~---~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 201 VVKLGQD---LDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHH---TTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHH---CCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 6554332 235544 466778888888999999854 7899999999877654
No 374
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=21.94 E-value=96 Score=32.39 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=39.7
Q ss_pred CccEEEEcCCCCCCCH-------HHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDG-------YEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|+|+...--|+.+| ++-++++|+.. .+++ |.+.+--..+....|.++|+|.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~-----~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF-----PSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC-----TTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc-----CCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 4788887666787776 34456666532 2344 5567766788899999999999886
No 375
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=21.83 E-value=1.2e+02 Score=31.38 Aligned_cols=66 Identities=8% Similarity=0.162 Sum_probs=47.6
Q ss_pred Ccc-EEEEcCCCCCC---CHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhc---CCCEEEE------cCCCH
Q 001298 1016 RFD-LILMDCQMPKM---DGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGV---GMNAYLT------KPIDS 1082 (1105)
Q Consensus 1016 ~~D-lIlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~------KPi~~ 1082 (1105)
.+| +++++..-..+ -+++.++++++. .++|||+-.+-...++..+++++ |+|.++. .|..+
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~------~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~ 235 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVADR------TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTL 235 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHTT------CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHHh------CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCH
Confidence 456 55677653322 147888888853 35899999988888999999999 9998875 46665
Q ss_pred HHHHH
Q 001298 1083 ERMVS 1087 (1105)
Q Consensus 1083 ~~L~~ 1087 (1105)
.++.+
T Consensus 236 ~~~~~ 240 (244)
T 2y88_A 236 PQALA 240 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 376
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=21.81 E-value=1.4e+02 Score=32.23 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=47.4
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 001298 948 EGLRILLAEDTPL---IQIVACKILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDC 1024 (1105)
Q Consensus 948 ~g~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi 1024 (1105)
.|.+|++++-++. ..+.+....+..|..+..+.++.+.-..+... ..||+||+|
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~----------------------~~~dlvIiD- 189 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF----------------------SEYDHVFVD- 189 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG----------------------GGSSEEEEE-
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh----------------------cCCCEEEEe-
Confidence 3668999988763 22334444444565554455555443333321 369999999
Q ss_pred CCCCCCHH--HHHHHHHccccccCCCCcceEEEeccCCHHHHHH
Q 001298 1025 QMPKMDGY--EATIEIRKSESEHGARNIPIVALTAHAMNADEKK 1066 (1105)
Q Consensus 1025 ~MP~mdG~--e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~ 1066 (1105)
.|+.+.. .....+++.... ..++-.++++.+.....+..+
T Consensus 190 -T~G~~~~~~~~~~el~~~l~~-~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 190 -TAGRNFKDPQYIDELKETIPF-ESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp -CCCCCTTSHHHHHHHHHHSCC-CTTEEEEEEEETTBCHHHHHH
T ss_pred -CCCCChhhHHHHHHHHHHHhh-cCCCeEEEEEECCCCHHHHHH
Confidence 5666543 233444433211 011223566644444444444
No 377
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=21.72 E-value=3.1e+02 Score=25.51 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=34.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|+|+.-..-+. +-..++..+|+.. +.++||+... +.+......++|+|..+.
T Consensus 71 ~ad~vi~~~~~~~-~n~~~~~~a~~~~-----~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 71 CAKWLILTIPNGY-EAGEIVASARAKN-----PDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp GCSEEEECCSCHH-HHHHHHHHHHHHC-----SSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred cCCEEEEECCChH-HHHHHHHHHHHHC-----CCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 5788886543221 2244666777653 3467887664 345566777899998875
No 378
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=21.64 E-value=1.9e+02 Score=30.14 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHhcCCEEEEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHHc
Q 001298 968 ILEKVGATVSVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLILMDCQMPKMDG-------YEATIEIRK 1040 (1105)
Q Consensus 968 ~L~~~g~~v~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~ 1040 (1105)
..++.|..+-.+-|...-++.++... +....|+|+.=.-=|+.+| ++-.+++|+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l-------------------~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~ 169 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL-------------------DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRK 169 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH-------------------TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh-------------------hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHH
Confidence 66778988877765443333332211 0014888866555566655 555666665
Q ss_pred cccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcC-----CCHHHHHHHHHHHh
Q 001298 1041 SESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKP-----IDSERMVSTILRLT 1093 (1105)
Q Consensus 1041 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP-----i~~~~L~~~I~~l~ 1093 (1105)
... +++ |.+.+--..+...+|.++|+|-++.=- =++.+-...+++.+
T Consensus 170 ~~~-----~~~-I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~ 221 (227)
T 1tqx_A 170 KYK-----NLN-IQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSV 221 (227)
T ss_dssp HCT-----TCE-EEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred hcc-----CCe-EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 431 344 556777778899999999999988642 24444444444433
No 379
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=21.29 E-value=1.6e+02 Score=31.84 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=47.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEEcCC
Q 001298 1016 RFDLILMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLTKPI 1080 (1105)
Q Consensus 1016 ~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KPi 1080 (1105)
..++|.+|..- .--..+++++||+... ..+||++=-+-.+.++..+++++|||..+.--.
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~----~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSA 258 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLG----PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGA 258 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSC----TTCEEEEESSCCSHHHHHHHHHTTCSEEEESGG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcC----CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECch
Confidence 46899999865 3334789999997521 158999888888999999999999999998653
No 380
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.04 E-value=4.3e+02 Score=31.52 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhcCCEEEEEC---CHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLA----EDTPLIQIVACKILEKVGATVSVVP---DGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
+.+||++ |-+.+-..++..+|+..||+|.... ..++.++.+.+ ..+|+|.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~-----------------------~~~diVg 154 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE-----------------------VNADLIG 154 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH-----------------------HTCSEEE
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----------------------cCCCEEE
Confidence 3578888 6677778888999999999997643 45566666654 3799999
Q ss_pred EcCCCCCC-C-HHHHHHHHHccccccCCCCcceEEEeccCCHHHHH-HH--HhcCCCEEEE
Q 001298 1022 MDCQMPKM-D-GYEATIEIRKSESEHGARNIPIVALTAHAMNADEK-KC--LGVGMNAYLT 1077 (1105)
Q Consensus 1022 mDi~MP~m-d-G~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~-~~--l~aG~d~yL~ 1077 (1105)
+-+.|..- + --++.+++|+. + .++||++--+-...+... ++ .-.|+|.|-.
T Consensus 155 LS~l~t~~~~~m~~~i~~Lr~~----g-~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 155 LSGLITPSLDEMVNVAKEMERQ----G-FTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp EECCSTHHHHHHHHHHHHHHHT----T-CCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred EEecCCCCHHHHHHHHHHHHHc----C-CCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 99988532 1 12344555542 1 358876655544443321 11 1229988865
No 381
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=20.44 E-value=2.6e+02 Score=30.34 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh--cC----CEE-EEECCHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEEE
Q 001298 949 GLRILLAEDTPLIQIVACKILEK--VG----ATV-SVVPDGLQAVEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLIL 1021 (1105)
Q Consensus 949 g~~ILIvdD~~~~~~~l~~~L~~--~g----~~v-~~a~ng~eAl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlIl 1021 (1105)
..+|..||=++...+.++..+.. .| -.+ ....|+.+.+... ...||+|+
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------------------~~~fD~Ii 156 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------------------------EERYDVVI 156 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------------------------CCCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------------------------CCCccEEE
Confidence 35899999999999999887764 12 223 4567776654321 24799999
Q ss_pred EcCCCCC-CCH-------HHHHHHHHcccc
Q 001298 1022 MDCQMPK-MDG-------YEATIEIRKSES 1043 (1105)
Q Consensus 1022 mDi~MP~-mdG-------~e~~~~IR~~~~ 1043 (1105)
+|.-.|. ++| -++.+.+++.-.
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk 186 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLN 186 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcC
Confidence 9987776 223 467777776543
No 382
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.25 E-value=72 Score=34.51 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCEEEEEeC-----CHHHHHHHHHHHHhcC-CEEEEECCHHHH--HHHHHHhhhhhhhhhhcccCCCCCCCCCCCCccEE
Q 001298 949 GLRILLAED-----TPLIQIVACKILEKVG-ATVSVVPDGLQA--VEALNRMLAAESSRRRSLLQGSPSETPDTPRFDLI 1020 (1105)
Q Consensus 949 g~~ILIvdD-----~~~~~~~l~~~L~~~g-~~v~~a~ng~eA--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlI 1020 (1105)
.++|||+.. -+.....+..+|++.| ++|.++.+.... .+.+. ..-..||+|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---------------------~~L~~~D~v 62 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---------------------LDFSPYQLV 62 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---------------------CCCTTCSEE
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---------------------hhhhcCCEE
Confidence 468999976 2556678899999998 999999774200 00010 012469999
Q ss_pred EEcCCCCCCCHHHHHHHHHccccccCCCCcceEEEec
Q 001298 1021 LMDCQMPKMDGYEATIEIRKSESEHGARNIPIVALTA 1057 (1105)
Q Consensus 1021 lmDi~MP~mdG~e~~~~IR~~~~~~~~~~ipIIalTa 1057 (1105)
+++..+...+- +..+.|++.-.. ..++|++=+
T Consensus 63 V~~~~~~~l~~-~~~~~l~~yV~~----Ggglv~~H~ 94 (281)
T 4e5v_A 63 VLDYNGDSWPE-ETNRRFLEYVQN----GGGVVIYHA 94 (281)
T ss_dssp EECCCSSCCCH-HHHHHHHHHHHT----TCEEEEEGG
T ss_pred EEeCCCCcCCH-HHHHHHHHHHHc----CCCEEEEec
Confidence 99987766553 333444443221 246777643
No 383
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=20.05 E-value=4.9e+02 Score=28.97 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=42.6
Q ss_pred CccEEEEcCC----C-CCCCHHHHHHHHHccccccCCCCcceEEEeccCCHHHHHHHHhcCCCEEEE
Q 001298 1016 RFDLILMDCQ----M-PKMDGYEATIEIRKSESEHGARNIPIVALTAHAMNADEKKCLGVGMNAYLT 1077 (1105)
Q Consensus 1016 ~~DlIlmDi~----M-P~mdG~e~~~~IR~~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1077 (1105)
..|.|.+.-. + -....++++.+|++.-. .++|||+-.+-.+..|..+++.+|||....
T Consensus 238 GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~----~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 238 NVQGIVVSNHGGRQLDEVSASIDALREVVAAVK----GKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHT----TSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhC----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4677766321 0 02235788888876421 359999999999999999999999999876
Done!