Your job contains 1 sequence.
>001299
MYRLDQLRKQINGPSSQLQEQNRVIQRKSWNPKGLWFTAKSRGSQKIIQVERNGLPTQKM
PPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNKADGPSNVHNAVVPY
QVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKW
WQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSL
AARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPDRCCELK
DRDDAFDSRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASST
KTSNAESFITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTA
DVASPSKTCIKESSIAASTEIPQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQAS
TSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDATTTSKKSPRGKGKSK
EYKSDMKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADES
EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS
VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPR
LCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK
GIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESP
ESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPT
RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRC
NSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHE
TSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCP
RPLVNRLHCSPSKKEAGSKRSRDES
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001299
(1105 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184432 - symbol:DME "DEMETER" species:3702 "A... 1525 2.7e-199 3
TAIR|locus:2044923 - symbol:DML1 "demeter-like 1" species... 1513 2.2e-189 2
TAIR|locus:2100138 - symbol:DML2 "demeter-like 2" species... 1440 8.9e-182 2
TAIR|locus:2124301 - symbol:DML3 "demeter-like protein 3"... 1271 3.3e-158 2
TAIR|locus:2100382 - symbol:AT3G47830 species:3702 "Arabi... 192 2.6e-12 1
TIGR_CMR|CHY_1121 - symbol:CHY_1121 "endonuclease III" sp... 90 3.7e-05 2
>TAIR|locus:2184432 [details] [associations]
symbol:DME "DEMETER" species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0019104 "DNA
N-glycosylase activity" evidence=ISS;IDA] [GO:0043078 "polar
nucleus" evidence=IDA] [GO:0006349 "regulation of gene expression
by genetic imprinting" evidence=IMP] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA;IDA] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00525 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0009793 GO:GO:0043078 GO:GO:0006306
GO:GO:0004519 GO:GO:0003906 GO:GO:0006349 EMBL:AF521596
EMBL:DQ335243 EMBL:AL162875 EMBL:AK117994 EMBL:BT005357
IPI:IPI00516439 IPI:IPI00534354 IPI:IPI00760328 PIR:T48452
PIR:T48453 PIR:T48454 RefSeq:NP_001078527.1 RefSeq:NP_196076.2
UniGene:At.33104 ProteinModelPortal:Q8LK56 SMR:Q8LK56 STRING:Q8LK56
PaxDb:Q8LK56 PRIDE:Q8LK56 EnsemblPlants:AT5G04560.2 GeneID:830335
KEGG:ath:AT5G04560 TAIR:At5g04560 eggNOG:COG0177
HOGENOM:HOG000112227 InParanoid:Q8LK56 OMA:CTEITES PhylomeDB:Q8LK56
ProtClustDB:CLSN2690787 Genevestigator:Q8LK56 GO:GO:0019104
Uniprot:Q8LK56
Length = 1987
Score = 1525 (541.9 bits), Expect = 2.7e-199, Sum P(3) = 2.7e-199
Identities = 307/562 (54%), Positives = 376/562 (66%)
Query: 541 EYKSDMKND-RTKKTTPKKNSDNTVQQDWDLLRRIYSTGE---ERSHDKMDSVDWEAVRC 596
EYK R K T T Q WD LR+ E ER+ + MDS+D+EA+R
Sbjct: 1424 EYKETNATILREMKGTLADGKKPTSQ--WDSLRKDVEGNEGRQERNKNNMDSIDYEAIRR 1481
Query: 597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 656
A SEI++AIKERG N++A RIK+FL R+V+ HG IDLEWLR PPDK K+YLL I GL
Sbjct: 1482 ASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYLLSIRGL 1541
Query: 657 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 716
GLKSVECVRLL+L ++AFPVD NVGRIAVR+GWVPLQPLP L +HLL+ YPV++ IQ +
Sbjct: 1542 GLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLESIQKF 1601
Query: 717 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 776
LWPRLC LDQ+TLYELHYQ+ITFGK+FC K PNC ACP+RGEC+HFASA ASAR ALP
Sbjct: 1602 LWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRHFASAYASARLALPA 1661
Query: 777 PSEKGIVTSEFGNGIGQSPPLVVNPIPV-IRIEADPVSESGYQINNCEPIIEEPRSPGPQ 835
P E+ + ++ PP+ + I + + +E S + NCEPIIEEP SPG +
Sbjct: 1662 PEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQE 1721
Query: 836 CXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALT 892
C PT++L +F ME N + LQ+ S ALVAL
Sbjct: 1722 CTEITESDIEDAYYNEDPDEI-PTIKLNIEQFGMTLREHMERN-MELQEGDMSKALVALH 1779
Query: 893 AEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNS 952
S+PT KLK + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ NS
Sbjct: 1780 PTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANS 1839
Query: 953 VGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQ 1011
P+ +C K S K+C E C CNS+ E N+ VRGT+LIPCRTA RG FPLNGTYFQ
Sbjct: 1840 AQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQ 1899
Query: 1012 VNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVR 1071
VNE+FADHE+S PI+VPR I +L R V FG+S T++F L QIQ FW+GFVCVR
Sbjct: 1900 VNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVR 1959
Query: 1072 GFDRRYRCPRPLVNRLHCSPSK 1093
GF+++ R PRPL+ RLH SK
Sbjct: 1960 GFEQKTRAPRPLMARLHFPASK 1981
Score = 405 (147.6 bits), Expect = 2.7e-199, Sum P(3) = 2.7e-199
Identities = 103/266 (38%), Positives = 150/266 (56%)
Query: 115 NAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSN 174
NA+V Y+ G GALVP++ K++K +P+V +D T R+WNL+M D D+ +
Sbjct: 931 NAMVLYK-GD----GALVPYE--SKKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEKD 983
Query: 175 EDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSS 234
+ EKWW++ER VF GR SF ARMHL+ GDRRF PWKGSVVDSV+GV+LTQNVSD+LSS
Sbjct: 984 KKKEKWWEEERRVFRGRADSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSS 1043
Query: 235 SAYMSLAARFPLKSTNDHTPSDENLRTTASLEPIGSNSTSNGAVYDSEGNMYFVTEPEPD 294
SA+MSLAARFP K ++ + N+R+ +P G N + + + ++ E
Sbjct: 1044 SAFMSLAARFPPKLSSSRE-DERNVRSVVVEDPEGCILNLN-EIPSWQEKVQHPSDMEVS 1101
Query: 295 RCCE-LKDR-DDAFDSRIQRKALQENGDIKVMTDAVPSQ-AFDTSSVQSLDRTQLFPTGN 351
K++ D +S I+R E + + + SQ +FD + QS R
Sbjct: 1102 GVDSGSKEQLRDCSNSGIERFNFLEKSIQNLEEEVLSSQDSFDPAIFQSCGRVGSCSCSK 1161
Query: 352 SKADVASSTKTSNAESFITQFSHTGN 377
S A+ ++ + S +Q TG+
Sbjct: 1162 SDAEFPTTRCETKTVSGTSQSVQTGS 1187
Score = 46 (21.3 bits), Expect = 9.7e-162, Sum P(3) = 9.7e-162
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 550 RTKKTTPKKNSDNTVQQDWDLL--RRIYSTGEERSHDKMDSVDWEAVR 595
+ +K PK + D+ + W+LL + G+E DK WE R
Sbjct: 948 KKRKPRPKVDIDDETTRIWNLLMGKGDEKEGDEEK-DKKKEKWWEEER 994
Score = 41 (19.5 bits), Expect = 9.7e-162, Sum P(3) = 9.7e-162
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 261 TTASLEPIGSNSTSN 275
TT ++EP+ N TS+
Sbjct: 125 TTGNVEPVNGNFTSD 139
Score = 39 (18.8 bits), Expect = 1.6e-161, Sum P(3) = 1.6e-161
Identities = 28/142 (19%), Positives = 57/142 (40%)
Query: 134 HQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGRIQ 193
H+I E + + ++D + +DG+ +D D+ K Q++ R +
Sbjct: 248 HEIPEPKSDKSMQSIMDSSAVNATEATEQ-NDGSRQD-VLEFDLNKTPQQKPSK---RKR 302
Query: 194 SFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHT 253
F ++ ++ G + KP K + + VV + A A + +KS +
Sbjct: 303 KFMPKV-VVEGKPKRKPRKPAELPKVV----VEGKPKRKPRKA----ATQEKVKSKETGS 353
Query: 254 PSDENLRTTASLEPIGSNSTSN 275
+NL+ +A+ +P SN
Sbjct: 354 AKKKNLKESATKKPANVGDMSN 375
Score = 38 (18.4 bits), Expect = 2.7e-199, Sum P(3) = 2.7e-199
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 39 AKSRGSQKIIQVERNGLPTQ 58
AK QK++Q +G+P +
Sbjct: 777 AKKTKIQKVVQENLHGMPPE 796
>TAIR|locus:2044923 [details] [associations]
symbol:DML1 "demeter-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006281 "DNA
repair" evidence=IEA;IMP] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS;IDA] [GO:0006342 "chromatin silencing"
evidence=IMP] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS;IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IDA] [GO:0031936
"negative regulation of chromatin silencing" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=IMP] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764
SMART:SM00478 SMART:SM00525 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 EMBL:AC006919 GO:GO:0080111 GO:GO:0031936
GO:GO:0006342 GO:GO:0006306 GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 GO:GO:0019104 EMBL:AY286009 IPI:IPI00517101
PIR:D84781 RefSeq:NP_181190.3 UniGene:At.14091
ProteinModelPortal:Q9SJQ6 SMR:Q9SJQ6 STRING:Q9SJQ6 PaxDb:Q9SJQ6
PRIDE:Q9SJQ6 EnsemblPlants:AT2G36490.1 GeneID:818224
KEGG:ath:AT2G36490 TAIR:At2g36490 HOGENOM:HOG000154178
InParanoid:Q9SJQ6 OMA:ANTASLI PhylomeDB:Q9SJQ6
ProtClustDB:CLSN2915131 Genevestigator:Q9SJQ6 GermOnline:AT2G36490
Uniprot:Q9SJQ6
Length = 1393
Score = 1513 (537.7 bits), Expect = 2.2e-189, Sum P(2) = 2.2e-189
Identities = 357/798 (44%), Positives = 459/798 (57%)
Query: 324 MTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVAS--STKTSNAESFITQFSHTGNLKKN 381
++D + S AF S+ S P+ N A +S S + + +S T S + +
Sbjct: 609 VSDHLSSSAF--MSLASQFPVPFVPSSNFDAGTSSMPSIQITYLDSEETMSSPPDH-NHS 665
Query: 382 SVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPSKTCIKESSIAASTEI 441
SV + + D PS N ++SS ++ + + + D + SK + +S E+
Sbjct: 666 SVTLKNTQPDEEKDYV-PS-NETSRSS-SEIAISAHESVDKTTDSKEYVDSDRKGSSVEV 722
Query: 442 PQL-ENTALLQ--DKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSD 498
+ E +L D L C + P N +A +S DL+ ++R+ S
Sbjct: 723 DKTDEKCRVLNLFPSEDSALTCQHSMVS-DAP---QNTERAGSSSEIDLEGEYRT-SFMK 777
Query: 499 FNDPFEISVLPSNRESFRTGMPQAHDAXXXXXXXXXXXXXXXEYK-----SDMKND--RT 551
++S+ SN+ S + S D
Sbjct: 778 LLQGVQVSLEDSNQVSPNMSPGDCSSEIKGFQSMKEPTKSSVDSSEPGCCSQQDGDVLSC 837
Query: 552 KKTTPKKNSDNTVQQ-----DWDLLRRIYST--G-EERSHDKMDSVDWEAVRCADESEIA 603
+K T K+ +++ DWD LRR G E++ MD+VDW+A+R AD E+A
Sbjct: 838 QKPTLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTVDWKAIRAADVKEVA 897
Query: 604 DAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVEC 663
+ IK RG + +A RI+ FL+RLV HGSIDLEWLR+VPPDK KEYLL GLGLKSVEC
Sbjct: 898 ETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKAKEYLLSFNGLGLKSVEC 957
Query: 664 VRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCY 723
VRLL+L H+AFPVD NVGRIAVRLGWVPLQPLP L +HLL+ YP+++ IQ YLWPRLC
Sbjct: 958 VRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLCK 1017
Query: 724 LDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEKGIV 783
LDQKTLYELHYQMITFGK+FC K PNC ACP++GEC+HFASA ASAR ALP +EKG+
Sbjct: 1018 LDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFASAFASARLALPS-TEKGMG 1076
Query: 784 TSEFGNGIGQSP-PLVVNPIPVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCXXX 839
T + ++P PL + P P R + V SE ++ CEPIIEEP SP P+
Sbjct: 1077 TPD------KNPLPLHL-PEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPE--TA 1127
Query: 840 XXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAA 896
PT+RL F N ME NK LQD SSALVALTAE A
Sbjct: 1128 EVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKE-LQDGNMSSALVALTAETA 1186
Query: 897 SVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSP 956
S+P KLK + LRTEH VY LPD H LL ++R+PDDP YLLAIW+PGE+ +S+
Sbjct: 1187 SLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPS 1246
Query: 957 QYRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEV 1015
C + + LC+ E C+SCNS+ E + IVRGTILIPCRTA RG FPLNGTYFQVNEV
Sbjct: 1247 VSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEV 1306
Query: 1016 FADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDR 1075
FADH +S +PINVPR I L R V FG+S T+F L +IQ FW+G+VCVRGFDR
Sbjct: 1307 FADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDR 1366
Query: 1076 RYRCPRPLVNRLHCSPSK 1093
+ R P+PL+ RLH SK
Sbjct: 1367 KTRGPKPLIARLHFPASK 1384
Score = 345 (126.5 bits), Expect = 2.2e-189, Sum P(2) = 2.2e-189
Identities = 90/210 (42%), Positives = 126/210 (60%)
Query: 40 KSRGSQKIIQVERNGLPTQ-KMPPRYSRGLQVDMEQQLMQSTTADIIRKFKDLTIRDGGS 98
K S+K ++N LP + PP ++ GL D E +++ I + L I S
Sbjct: 434 KPTKSEKSQTKQKNLLPNLCRFPPSFT-GLSPD-ELWKRRNSIETISELLRLLDINREHS 491
Query: 99 QLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLDPGTLRMWN 158
+ L P +++ +V + G GA+VP K+ + +P+V LD T R+W
Sbjct: 492 ETALV------PYTMNSQIVLFGGGA----GAIVP-VTPVKKPRPRPKVDLDDETDRVWK 540
Query: 159 LIM-NID-DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 216
L++ NI+ +G S+E KWW++ER VF GR SF ARMHL+ GDRRF PWKGSVV
Sbjct: 541 LLLENINSEGV---DGSDEQKAKWWEEERNVFRGRADSFIARMHLVQGDRRFTPWKGSVV 597
Query: 217 DSVVGVYLTQNVSDNLSSSAYMSLAARFPL 246
DSVVGV+LTQNVSD+LSSSA+MSLA++FP+
Sbjct: 598 DSVVGVFLTQNVSDHLSSSAFMSLASQFPV 627
>TAIR|locus:2100138 [details] [associations]
symbol:DML2 "demeter-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0006306 "DNA
methylation" evidence=RCA] InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00764 SMART:SM00525
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 eggNOG:COG0177 EMBL:AC010927
IPI:IPI00533587 RefSeq:NP_187612.5 UniGene:At.40005
ProteinModelPortal:Q9SR66 STRING:Q9SR66 PaxDb:Q9SR66 PRIDE:Q9SR66
GeneID:820162 KEGG:ath:AT3G10010 TAIR:At3g10010 InParanoid:Q9SR66
OMA:STHCELN Genevestigator:Q9SR66 GermOnline:AT3G10010
Uniprot:Q9SR66
Length = 1332
Score = 1440 (512.0 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 315/683 (46%), Positives = 406/683 (59%)
Query: 429 CIKESSIAASTEIPQLENT-ALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDL 487
C +ESS + + I + + +L D + +L +E +D + G+ T NDL
Sbjct: 654 CSQESSKTSDSSITSADQSKTMLLDPFNTVLM-NEQVDSQMVKGK---GHIPYTDDLNDL 709
Query: 488 KSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDAXXXXXXXXXXXXXXXEYKSDMK 547
+SS+ + ++ +P E D E D+K
Sbjct: 710 SQGISMVSSASTHCELNLNEVPPEVEL----CSHQQDPESTIQTQDQQESTRTE---DVK 762
Query: 548 NDRTKKTT--PKKNSDNTVQQ------DWDLLRRIYSTG---EERSHDKMDSVDWEAVRC 596
+R K TT PKK S + + DWD LR+ +G ER+ MD+VDW+A+RC
Sbjct: 763 KNRKKPTTSKPKKKSKESAKSTQKKSVDWDSLRKEAESGGRKRERTERTMDTVDWDALRC 822
Query: 597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 656
D +IA+ I +RG N++A RIK FLNRLV+ HGSIDLEWLR+VPPDK KEYLL I GL
Sbjct: 823 TDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYLLSINGL 882
Query: 657 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 716
GLKSVECVRLLSL IAFPVD NVGRIAVRLGWVPLQPLP +L +HLL+ YPV++ +Q Y
Sbjct: 883 GLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPVLESVQKY 942
Query: 717 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPG 776
LWPRLC LDQKTLYELHY MITFGK+FC K PNC ACP++ EC+H++SA ASAR ALP
Sbjct: 943 LWPRLCKLDQKTLYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSARASARLALPE 1002
Query: 777 PSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQC 836
P E + + P+VVN P + + + E+ + NCEPIIEEP SP P+
Sbjct: 1003 PEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEY 1061
Query: 837 XXXXXXXXXXXXXXXXXXXX-------XPTLRLQEREFKENFPNFMEMNKVMLQDSSALV 889
PT+ L + + + + +NK S LV
Sbjct: 1062 IEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNK---EAGTSHDLVVNKEA-GTSHDLV 1117
Query: 890 ALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGES 949
L+ AA++P RKLK LRTEHHV+ LPD H +L GF+RR+ +D PYLLAIW+PGE+
Sbjct: 1118 VLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGET 1177
Query: 950 PNSVGSPQYRCNSKDSK--LCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNG 1007
NS+ P+ RC +S LCN C+ CN E + VRGTILIPCRTA RG FPLNG
Sbjct: 1178 VNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNG 1237
Query: 1008 TYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGF 1067
TYFQ NEVFADH++S +PI+VP I +L+R + GSS +++ L + I+ F G+
Sbjct: 1238 TYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGY 1297
Query: 1068 VCVRGFDRRYRCPRPLVNRLHCS 1090
VCVRGFDR R P+ LV RLHCS
Sbjct: 1298 VCVRGFDRENRKPKSLVKRLHCS 1320
Score = 346 (126.9 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 102/258 (39%), Positives = 146/258 (56%)
Query: 32 PKGL-WFTAKSRGSQKIIQVERNGLPTQKMPPRYS-RGLQVDMEQQLMQSTT-ADIIRKF 88
P+GL T S+ K+ + +R+ ++ +++ R L + +Q T+ ADI +
Sbjct: 387 PRGLPKLTVASKLQLKVFRKKRS--QRNRVASQFNARILDLQWRRQNPTGTSLADIWER- 443
Query: 89 KDLTIRDGGSQL--PLQCNKADG---PSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKL 143
LTI D ++L L NK +G P N A++ Y+ E A+V + KK
Sbjct: 444 -SLTI-DAITKLFEELDINK-EGLCLPHNRETALILYKKS-YEEQKAIVKYS-----KKQ 494
Query: 144 KPEVVLDPGTLRMWNLIMN-ID-DGTTKDQTSNEDMEKWWQKEREVFEGRIQSFTARMHL 201
KP+V LDP T R+W L+M+ ID DG S+E+ KWW++ER +F GR SF ARM +
Sbjct: 495 KPKVQLDPETSRVWKLLMSSIDCDGV---DGSDEEKRKWWEEERNMFHGRANSFIARMRV 551
Query: 202 ILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLK------STNDHTPS 255
+ G+R F PWKGSVVDSVVGV+LTQNV+D+ SSSAYM LAA FP++ S ++ S
Sbjct: 552 VQGNRTFSPWKGSVVDSVVGVFLTQNVADHSSSSAYMDLAAEFPVEWNFNKGSCHEEWGS 611
Query: 256 DENLRTTASLEPIGSNST 273
T +L+P ST
Sbjct: 612 SVTQETILNLDPRTGVST 629
Score = 42 (19.8 bits), Expect = 1.2e-149, Sum P(2) = 1.2e-149
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 426 SKTCIKESSIAASTEIPQLENTALLQDKV 454
S +K+ IA + E QLE L + K+
Sbjct: 180 SPAAVKKRKIARNDEKSQLETPTLKRKKI 208
Score = 41 (19.5 bits), Expect = 6.2e-152, Sum P(3) = 6.2e-152
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 139 KRKKLKPEVVLDPGT 153
KRKK++P+VV + T
Sbjct: 204 KRKKIRPKVVREGKT 218
Score = 38 (18.4 bits), Expect = 6.2e-152, Sum P(3) = 6.2e-152
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 308 SRIQRKALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNA 365
S++Q K ++ + + V SQ F+ + + L + PTG S AD+ + T +A
Sbjct: 397 SKLQLKVFRKK---RSQRNRVASQ-FN-ARILDLQWRRQNPTGTSLADIWERSLTIDA 449
Score = 37 (18.1 bits), Expect = 7.8e-152, Sum P(3) = 7.8e-152
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 426 SKTCIKESSIAAS 438
SK IK+SSIAA+
Sbjct: 223 SKAGIKKSSIAAT 235
>TAIR|locus:2124301 [details] [associations]
symbol:DML3 "demeter-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0010216 "maintenance of DNA methylation" evidence=IMP]
[GO:0019104 "DNA N-glycosylase activity" evidence=IDA]
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR011257
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0006351
GO:GO:0051539 GO:GO:0004519 EMBL:AL021961 EMBL:AL161584
GO:GO:0010216 eggNOG:COG0177 GO:GO:0019104 EMBL:AY735663
IPI:IPI00525973 PIR:T05430 RefSeq:NP_195132.3 UniGene:At.51042
ProteinModelPortal:O49498 SMR:O49498 STRING:O49498 PRIDE:O49498
EnsemblPlants:AT4G34060.1 GeneID:829552 KEGG:ath:AT4G34060
TAIR:At4g34060 HOGENOM:HOG000064650 OMA:WARIASS PhylomeDB:O49498
ProtClustDB:CLSN2681626 Genevestigator:O49498 Uniprot:O49498
Length = 1044
Score = 1271 (452.5 bits), Expect = 3.3e-158, Sum P(2) = 3.3e-158
Identities = 272/574 (47%), Positives = 349/574 (60%)
Query: 543 KSDMKNDRTKKTTPKKNSDNTVQQD----WDLLRRIYSTGEERSHDKMDSVDWEAVRCAD 598
+S K + + T +KN + +D W+ LRR+Y+ R MDSV+W VR +
Sbjct: 473 ESISKVEDHENTAKRKNEKTGIIEDEIVDWNNLRRMYTKEGSRPEMHMDSVNWSDVRLSG 532
Query: 599 ESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGL 658
++ + IK+RGQ I++ RI +FLN V +G+IDLEWLRN P VK YLL+IEG+GL
Sbjct: 533 QNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYLLEIEGIGL 592
Query: 659 KSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLW 718
KS ECVRLL L+H AFPVD NVGRIAVRLG VPL+PLP + +H L EYP MD IQ YLW
Sbjct: 593 KSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLW 652
Query: 719 PRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPS 778
PRLC L Q+TLYELHYQMITFGK+FC K PNC ACP++ ECK+FASA S++ L P
Sbjct: 653 PRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYVSSKVLLESPE 712
Query: 779 EKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNC-EPIIEEPRSPGPQCX 837
EK + F N Q + V+ I + + VS C +P++E P SP +
Sbjct: 713 EKMHEPNTFMNAHSQD--VAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIP 770
Query: 838 XXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMN-KVMLQD---SSALVALTA 893
P + K++ + + ++ ++ D S ALV T
Sbjct: 771 ESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTP 830
Query: 894 EAASVPT---RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESP 950
E A +P RK+K LRTEH VYVLPD HELL F+RR DDPSPYLLAIW PGE+
Sbjct: 831 ENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETS 890
Query: 951 NSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYF 1010
+S P+ +C+S SKLC + C C ++ E+N+ I RGTILIPCRTA RG FPLNGTYF
Sbjct: 891 SSFVPPKKKCSSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYF 950
Query: 1011 QVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCV 1070
Q NEVFADHETS +PI R L + + GS+ T++F LD R+I+ FW GF+C+
Sbjct: 951 QTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCL 1010
Query: 1071 RGFDRRYRCPRPLVNRLHCSPSKKEAGSKRSRDE 1104
R FDR+ R P+ LV RLH P E G K D+
Sbjct: 1011 RAFDRKQRDPKELVRRLHTPPD--ERGPKFMSDD 1042
Score = 292 (107.8 bits), Expect = 3.3e-158, Sum P(2) = 3.3e-158
Identities = 65/151 (43%), Positives = 94/151 (62%)
Query: 132 VPHQIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEGR 191
V IK +K + +V LDP T++ W+++M ++D ++ E KW +KERE+F+ R
Sbjct: 334 VTTMIKADKKLVTAKVNLDPETIKEWDVLM-VNDSPSRSYDDKETEAKW-KKEREIFQTR 391
Query: 192 IQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAYMSLAARFPLKSTND 251
I F RMH + G+R+FK WKGSVVDSVVGV+LTQN +D LSS+A+MS+AA+FP+ +
Sbjct: 392 IDLFINRMHRLQGNRKFKQWKGSVVDSVVGVFLTQNTTDYLSSNAFMSVAAKFPVDAREG 451
Query: 252 HTPSDENLRTTASLEPIGSNSTSNGAVYDSE 282
+ E + S E I + S V D E
Sbjct: 452 LSYYIEEPQDAKSSECIILSDESISKVEDHE 482
Score = 53 (23.7 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 546 MKNDRTKKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHD-KMDSVDWEAVR 595
+K D+ K T K N D ++WD+L + + RS+D K W+ R
Sbjct: 338 IKADK-KLVTAKVNLDPETIKEWDVL--MVNDSPSRSYDDKETEAKWKKER 385
Score = 40 (19.1 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 413 WPTGNSTADVASPSKTCIKESS 434
W G +++ P K C + S
Sbjct: 884 WQPGETSSSFVPPKKKCSSDGS 905
Score = 38 (18.4 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 282 EGNMYFVTEPEPDRCCELKDRDDAFDSRIQ---RKALQENGDIKVMTDAV 328
EG Y++ EP+ + E D S+++ A ++N ++ D +
Sbjct: 450 EGLSYYIEEPQDAKSSECIILSDESISKVEDHENTAKRKNEKTGIIEDEI 499
>TAIR|locus:2100382 [details] [associations]
symbol:AT3G47830 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] InterPro:IPR003265
InterPro:IPR011257 Pfam:PF00730 SMART:SM00478 EMBL:CP002686
GO:GO:0003824 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 KO:K10773 IPI:IPI00545586
RefSeq:NP_566893.1 UniGene:At.53825 ProteinModelPortal:F4JCQ3
SMR:F4JCQ3 PRIDE:F4JCQ3 EnsemblPlants:AT3G47830.1 GeneID:823937
KEGG:ath:AT3G47830 OMA:FGREYCS Uniprot:F4JCQ3
Length = 293
Score = 192 (72.6 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 46/118 (38%), Positives = 65/118 (55%)
Query: 591 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYL 650
W+ V A+ I +AI+ G A IK LNRL G + LE+LR + ++VK L
Sbjct: 128 WDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTEL 187
Query: 651 LDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 708
+G+G K+V CV + +LQH FPVD +V IA LGWVP ++HL ++ P
Sbjct: 188 SHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHLNRKIP 245
>TIGR_CMR|CHY_1121 [details] [associations]
symbol:CHY_1121 "endonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_359967.1
ProteinModelPortal:Q3AD17 STRING:Q3AD17 GeneID:3726382
KEGG:chy:CHY_1121 PATRIC:21275382
BioCyc:CHYD246194:GJCN-1120-MONOMER Uniprot:Q3AD17
Length = 210
Score = 90 (36.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 31/110 (28%), Positives = 52/110 (47%)
Query: 607 KERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 666
+E +Q G + L+++ +D E+ VP D E LL + G+G K+ E +
Sbjct: 70 EELSRQIRSLGLYRNKARNLIKIAEILDREYHGQVP-DSFAE-LLKLPGVGPKTAEVIVG 127
Query: 667 LSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 716
+ +FPVD +V R+A RLG + P + L K +P I ++
Sbjct: 128 VGFNKPSFPVDTHVFRVARRLGLSKART-PEGVSFDLKKIFPPNSWIDLH 176
Score = 82 (33.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 731 ELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 767
+LH+++I FG+ CK + P+C CP C+ S V
Sbjct: 174 DLHHRLIFFGRRICKAQKPSCNICPFPEFCQKEESDV 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1105 1069 0.00085 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 632 (67 KB)
Total size of DFA: 519 KB (2238 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 100.40u 0.09s 100.49t Elapsed: 00:00:04
Total cpu time: 100.41u 0.09s 100.50t Elapsed: 00:00:04
Start: Sat May 11 08:46:18 2013 End: Sat May 11 08:46:22 2013