BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001299
(1105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 641 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 700
VP D+ + L+ + G+G K+ V ++ A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 701 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 760
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 761 K 761
+
Sbjct: 209 R 209
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 641 VPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLH 700
VP D+ + L+ + G+G K+ V + A VD +V R++ RLG+ ++
Sbjct: 108 VPRDR--DELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVE 165
Query: 701 IHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGEC 760
L+K P ++ H++MI FG+ CK +SP C +CPL C
Sbjct: 166 KTLMKIIP-----------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLC 208
Query: 761 K 761
+
Sbjct: 209 R 209
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 570 LLRRIYSTGEERSHDK--MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 627
LLRR + ++ +DK + +E + +SEIA IKE G N A ++KE ++
Sbjct: 44 LLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI 103
Query: 628 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 687
+G VP + ++ +LD+ G+G + V L+ A VD N R+ R
Sbjct: 104 NDYGG-------RVPRN--RKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRY 154
Query: 688 GWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKR 747
G + +L + + ++ L P + + ++ F I C R
Sbjct: 155 F--------GGSYENLNYNHKALWELAETLVP------GGKCRDFNLGLMDFSAIICAPR 200
Query: 748 SPNCGACPLRGECKHF 763
P C C + C ++
Sbjct: 201 KPKCEKCGMSKLCSYY 216
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 616 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 674
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 675 PVDVNVGRIAVRLGWVP 691
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 616 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 674
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 675 PVDVNVGRIAVRLGWVP 691
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 616 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 674
A +K+ ++R+ +G ++LE+++++ ++ E L G+G + +C+ L S+Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAF 238
Query: 675 PVDVNVGRIAVRLGWVP 691
PVD V + + L P
Sbjct: 239 PVDTWVKKAMMSLYVAP 255
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 616 AGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQ-HIAF 674
A +K+ ++R+ +G ++LE+++++ ++ E L G+G K +C+ L S Q + AF
Sbjct: 181 AKYLKDTVDRI--YNGELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYSAF 238
Query: 675 PVDVNVGRIAVRLGWVP 691
PVD V + L P
Sbjct: 239 PVDTWVKKAXXSLYVAP 255
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 768
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 768
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 768
+I G + C R P+C CP++ C+ FA VA
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 225
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVA 768
+I G + C R P+C CP++ C+ FA VA
Sbjct: 182 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA 214
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 606 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 665
IK G N A I + L+E H VP D+ L + G+G K+ V
Sbjct: 76 IKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDRAA--LEALPGVGRKTANVVL 126
Query: 666 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 725
+ VD ++ R+ R + P + + + LLK P K+ + W
Sbjct: 127 NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVE-QVEEKLLKVVPAEFKVDCHHW------- 178
Query: 726 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 762
+I G+ C R P CG+C + C++
Sbjct: 179 ----------LILHGRYTCIARKPRCGSCIIEDLCEY 205
>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid
Dehydrogenase (Y167f Mutated Form) From Fungus
Cochliobolus Lunatus
Length = 270
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 272 STSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQ 331
+ SN V S G++ VTE E DR L R F +R + L E G I V+T + S+
Sbjct: 100 AVSNSGVV-SFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRI-VLTSSNTSK 157
Query: 332 AFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFP 388
F S+ + LF D SF+ FS KK +VN + P
Sbjct: 158 DF------SVPKHSLFSGSKGAVD-----------SFVRIFSKDCGDKKITVNAVAP 197
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 587 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI--DLEWLRNVPPD 644
D ++ + + + S++A+ ++ G N A RL++L G+I D + N +
Sbjct: 65 DEINLKKIAYIEFSKLAECVRPSGFYNQKA-------KRLIDLSGNILKDFQSFENFKQE 117
Query: 645 KVKEYLLDIEGLGLKSVECV 664
+E+LLD +G+G +S + +
Sbjct: 118 VTREWLLDQKGIGKESADAI 137
>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
(Apo Form) From Fungus Cochliobolus Lunatus
pdb|3QWF|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|E Chain E, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|F Chain F, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|G Chain G, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWF|H Chain H, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus
pdb|3QWI|A Chain A, Crystal Structure Of A 17beta-Hydroxysteroid Dehydrogenase
(Holo Form) From Fungus Cochliobolus Lunatus In Complex
With Nadph And Coumestrol
pdb|3QWI|B Chain B, Crystal Structure Of A 17beta-Hydroxysteroid Dehydrogenase
(Holo Form) From Fungus Cochliobolus Lunatus In Complex
With Nadph And Coumestrol
pdb|3QWI|C Chain C, Crystal Structure Of A 17beta-Hydroxysteroid Dehydrogenase
(Holo Form) From Fungus Cochliobolus Lunatus In Complex
With Nadph And Coumestrol
pdb|3QWI|D Chain D, Crystal Structure Of A 17beta-Hydroxysteroid Dehydrogenase
(Holo Form) From Fungus Cochliobolus Lunatus In Complex
With Nadph And Coumestrol
pdb|3QWH|A Chain A, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|B Chain B, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|C Chain C, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
pdb|3QWH|D Chain D, Crystal Structure Of The 17beta-Hydroxysteroid
Dehydrogenase From Cochliobolus Lunatus In Complex With
Nadph And Kaempferol
Length = 270
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 272 STSNGAVYDSEGNMYFVTEPEPDRCCELKDRDDAFDSRIQRKALQENGDIKVMTDAVPSQ 331
+ SN V S G++ VTE E DR L R F +R + L E G I V+T + S+
Sbjct: 100 AVSNSGVV-SFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRI-VLTSSNTSK 157
Query: 332 AFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFP 388
F S+ + L+ D SF+ FS KK +VN + P
Sbjct: 158 DF------SVPKHSLYSGSKGAVD-----------SFVRIFSKDCGDKKITVNAVAP 197
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 216 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 275
Query: 685 VR-LGWVP 691
R W P
Sbjct: 276 QRDYSWHP 283
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 213 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 272
Query: 685 VR-LGWVP 691
R W P
Sbjct: 273 QRDYSWHP 280
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 207 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 266
Query: 685 VR-LGWVP 691
R W P
Sbjct: 267 QRDYSWHP 274
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G K +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|3DQQ|A Chain A, The Crystal Structure Of The Putative Trna Synthase From
Salmonella Typhimurium Lt2
pdb|3DQQ|B Chain B, The Crystal Structure Of The Putative Trna Synthase From
Salmonella Typhimurium Lt2
Length = 421
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 973 CYSCNSVCERNAGIVRGTILIPCRTA---------NRGRFPLNGTYFQVNEVFADHETSH 1023
C + +S E N G V +++ T+ GR G F +N + A+ H
Sbjct: 85 CSTFDSTAEGNIGPVTDALMVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRH 144
Query: 1024 HPIN 1027
HPIN
Sbjct: 145 HPIN 148
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 648 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 705
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVARVLAR--------------CYAVS 152
Query: 706 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGEC 760
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 175 EDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSS 234
+ +E + R +F+ F A L+ G R K + + VVG Y+ + + + L +
Sbjct: 189 DSVEAYATMLRNIFD-----FNALKELLSGPNRLK-IRIDAMHGVVGPYVKKILCEELGA 242
Query: 235 SAYMSLAARFPLKSTNDHTPSDENLRTTASL-EPIGSNSTSNGAVYDSEGN 284
A ++ PL+ H P D NL A L E + S GA +D +G+
Sbjct: 243 PANSAVNC-VPLEDFGGHHP-DPNLTYAADLVETMKSGEHDFGAAFDGDGD 291
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 175 EDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSS 234
+ +E + R +F+ F A L+ G R K + + VVG Y+ + + + L +
Sbjct: 189 DSVEAYATMLRNIFD-----FNALKELLSGPNRLK-IRIDAMHGVVGPYVKKILCEELGA 242
Query: 235 SAYMSLAARFPLKSTNDHTPSDENLRTTASL-EPIGSNSTSNGAVYDSEGN 284
A ++ PL+ H P D NL A L E + S GA +D +G+
Sbjct: 243 PANSAVNC-VPLEDFGGHHP-DPNLTYAADLVETMKSGEHDFGAAFDGDGD 291
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 648 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 705
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVKRVLAR--------------CYAVS 152
Query: 706 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGECKHFA 764
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC---- 208
Query: 765 SAVASARFAL-PGPSEK 780
A A+ +AL PG K
Sbjct: 209 IAAANNSWALYPGKKPK 225
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 648 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 705
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVKRVLAR--------------CYAVS 152
Query: 706 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGEC 760
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 648 EYLLDIEGLGLKSVECVRLLSL-QHIAFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLK 705
E + + G+G + + LSL +H FP+ D NV R+ R + +
Sbjct: 109 EEVAALPGVGRSTAGAILSLSLGKH--FPILDGNVQRVLAR--------------CYAVS 152
Query: 706 EYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFCKKRSPNCGACPLRGECKHFA 764
+P +++ LW + E Q M+ G + C + P C CPL+ C
Sbjct: 153 GWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC---- 208
Query: 765 SAVASARFAL-PGPSEK 780
A A+ +AL PG K
Sbjct: 209 IAAANNSWALYPGKKPK 225
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L + A PVDV++ IA
Sbjct: 208 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 267
Query: 685 VR-LGWVP 691
R W P
Sbjct: 268 QRDYSWHP 275
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L + A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIA 684
L E G L+ LR ++ + L + G+G + +C+ L++L A PVDV++ IA
Sbjct: 214 LEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIA 273
Query: 685 VR-LGWVP 691
R W P
Sbjct: 274 QRDYSWHP 281
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFAL-PGPSEK 780
M+ G + C + P C CPL+ C A A+ +AL PG K
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC----IAAANNSWALYPGKKPK 225
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFAL-PGPSEK 780
M+ G + C + P C CPL+ C A A+ +AL PG K
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC----IAAANNSWALYPGKKPK 225
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 736 MITFGKIFCKKRSPNCGACPLRGEC 760
M+ G + C + P C CPL+ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,279,774
Number of Sequences: 62578
Number of extensions: 1316039
Number of successful extensions: 2637
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2607
Number of HSP's gapped (non-prelim): 74
length of query: 1105
length of database: 14,973,337
effective HSP length: 109
effective length of query: 996
effective length of database: 8,152,335
effective search space: 8119725660
effective search space used: 8119725660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)