Query 001299
Match_columns 1105
No_of_seqs 325 out of 1946
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 100.0 2.3E-37 8E-42 324.3 18.8 183 552-766 32-214 (226)
2 2abk_A Endonuclease III; DNA-r 100.0 4.5E-37 1.5E-41 318.2 16.3 179 552-763 28-206 (211)
3 1kea_A Possible G-T mismatches 100.0 1.4E-36 4.7E-41 317.0 16.1 183 552-766 34-219 (221)
4 3n5n_X A/G-specific adenine DN 100.0 4.4E-36 1.5E-40 325.4 18.6 188 552-768 48-236 (287)
5 1kg2_A A/G-specific adenine gl 100.0 1.3E-35 4.5E-40 310.2 18.5 183 552-767 29-215 (225)
6 3fsp_A A/G-specific adenine gl 100.0 4.8E-35 1.6E-39 324.6 17.4 192 552-779 38-233 (369)
7 1pu6_A 3-methyladenine DNA gly 100.0 3.7E-29 1.3E-33 261.0 12.3 174 552-742 29-212 (218)
8 4b21_A Probable DNA-3-methylad 99.9 1.2E-24 3.9E-29 229.7 15.1 161 553-719 60-223 (232)
9 3fhg_A Mjogg, N-glycosylase/DN 99.9 2.4E-24 8.3E-29 223.1 10.8 155 552-746 32-189 (207)
10 2yg9_A DNA-3-methyladenine gly 99.9 6.7E-24 2.3E-28 222.6 13.9 152 552-719 60-213 (225)
11 2h56_A DNA-3-methyladenine gly 99.9 6.8E-24 2.3E-28 223.4 13.6 149 552-709 50-201 (233)
12 3fhf_A Mjogg, N-glycosylase/DN 99.9 5.3E-24 1.8E-28 222.6 12.2 147 552-746 43-196 (214)
13 3s6i_A DNA-3-methyladenine gly 99.9 4E-23 1.4E-27 217.2 15.5 160 553-719 50-212 (228)
14 3i0w_A 8-oxoguanine-DNA-glycos 99.9 1.9E-22 6.4E-27 218.7 14.9 163 553-742 115-287 (290)
15 2xhi_A N-glycosylase/DNA lyase 99.9 5.6E-22 1.9E-26 221.0 13.5 135 553-691 152-298 (360)
16 3n0u_A Probable N-glycosylase/ 99.9 6.2E-22 2.1E-26 207.6 12.6 122 552-692 49-174 (219)
17 1mpg_A ALKA, 3-methyladenine D 99.8 9E-21 3.1E-25 204.1 14.8 153 553-719 113-273 (282)
18 2jhn_A ALKA, 3-methyladenine D 99.8 5.7E-21 1.9E-25 207.2 11.1 154 553-718 118-282 (295)
19 4e9f_A Methyl-CPG-binding doma 99.8 6.9E-21 2.4E-25 191.5 7.8 114 552-687 30-145 (161)
20 2jg6_A DNA-3-methyladenine gly 81.8 5.8 0.0002 41.3 9.7 66 564-633 42-112 (186)
21 2ofk_A 3-methyladenine DNA gly 81.0 3.6 0.00012 42.7 7.8 66 564-633 42-112 (183)
22 1x2i_A HEF helicase/nuclease; 79.9 1.8 6E-05 37.0 4.4 39 623-667 27-65 (75)
23 4glx_A DNA ligase; inhibitor, 77.8 3.6 0.00012 49.2 7.6 52 623-687 525-576 (586)
24 1kft_A UVRC, excinuclease ABC 76.5 2.1 7.3E-05 37.5 4.0 39 623-667 37-75 (78)
25 2a1j_B DNA excision repair pro 76.2 2.9 0.0001 37.7 4.9 40 623-668 45-84 (91)
26 3vdp_A Recombination protein R 75.9 1.8 6.2E-05 45.8 3.9 29 643-671 21-49 (212)
27 1z00_A DNA excision repair pro 75.3 3 0.0001 37.4 4.7 40 623-668 32-71 (89)
28 1vdd_A Recombination protein R 72.9 2.4 8.1E-05 45.3 3.9 28 644-671 8-35 (228)
29 2owo_A DNA ligase; protein-DNA 70.3 6.9 0.00023 47.6 7.5 70 590-668 470-564 (671)
30 2ztd_A Holliday junction ATP-d 63.1 4.2 0.00014 42.9 3.3 25 647-671 122-146 (212)
31 1s5l_U Photosystem II 12 kDa e 62.0 3 0.0001 41.4 1.9 52 593-666 56-107 (134)
32 2fmp_A DNA polymerase beta; nu 60.2 16 0.00056 40.5 7.5 57 600-667 20-76 (335)
33 2ihm_A POL MU, DNA polymerase 56.9 7.9 0.00027 43.5 4.3 50 610-664 68-118 (360)
34 2duy_A Competence protein come 56.6 5.7 0.0002 34.5 2.5 21 647-667 26-46 (75)
35 2ihm_A POL MU, DNA polymerase 54.7 21 0.00073 40.0 7.3 56 600-667 25-80 (360)
36 2fmp_A DNA polymerase beta; nu 54.0 9.1 0.00031 42.6 4.2 50 610-664 64-114 (335)
37 2bgw_A XPF endonuclease; hydro 52.4 15 0.0005 37.9 5.2 39 623-667 175-213 (219)
38 1jms_A Terminal deoxynucleotid 52.4 21 0.00072 40.4 6.9 59 601-671 45-104 (381)
39 2bcq_A DNA polymerase lambda; 52.2 21 0.00071 39.7 6.7 19 649-667 58-76 (335)
40 1ixr_A Holliday junction DNA h 51.6 23 0.00079 36.6 6.5 22 647-668 106-127 (191)
41 3arc_U Photosystem II 12 kDa e 51.5 5.3 0.00018 37.4 1.6 53 593-667 19-71 (97)
42 2ztd_A Holliday junction ATP-d 49.1 9 0.00031 40.4 3.0 45 645-690 85-132 (212)
43 1jms_A Terminal deoxynucleotid 48.6 13 0.00043 42.2 4.3 50 610-664 87-137 (381)
44 1wcn_A Transcription elongatio 47.9 22 0.00076 31.2 4.8 37 586-625 26-62 (70)
45 1cuk_A RUVA protein; DNA repai 47.5 22 0.00075 37.1 5.6 21 647-667 107-127 (203)
46 2duy_A Competence protein come 47.3 4.7 0.00016 35.1 0.5 53 592-666 19-71 (75)
47 2edu_A Kinesin-like protein KI 46.9 21 0.00071 32.7 4.7 58 592-667 32-89 (98)
48 1dgs_A DNA ligase; AMP complex 46.1 17 0.00057 44.2 5.1 52 623-687 520-571 (667)
49 1z00_B DNA repair endonuclease 45.7 15 0.0005 33.5 3.5 24 644-667 14-37 (84)
50 4gfj_A Topoisomerase V; helix- 45.7 12 0.0004 43.5 3.4 72 589-665 539-639 (685)
51 2a1j_A DNA repair endonuclease 45.2 11 0.00039 32.2 2.5 20 648-667 4-23 (63)
52 1ixr_A Holliday junction DNA h 44.1 12 0.00042 38.7 3.0 22 646-667 70-91 (191)
53 1cuk_A RUVA protein; DNA repai 39.4 16 0.00053 38.2 3.0 21 647-667 72-92 (203)
54 2edu_A Kinesin-like protein KI 38.7 18 0.00061 33.1 2.9 21 647-667 39-59 (98)
55 2bcq_A DNA polymerase lambda; 37.7 34 0.0011 38.1 5.5 48 610-664 64-112 (335)
56 1z00_A DNA excision repair pro 37.6 20 0.00068 32.0 3.0 24 646-670 17-40 (89)
57 2kp7_A Crossover junction endo 36.3 81 0.0028 28.9 6.8 40 615-665 36-75 (87)
58 4gfj_A Topoisomerase V; helix- 35.9 52 0.0018 38.4 6.6 81 587-667 395-487 (685)
59 1x2i_A HEF helicase/nuclease; 35.2 21 0.00073 30.1 2.7 25 645-670 11-35 (75)
60 3c1y_A DNA integrity scanning 35.2 31 0.0011 39.4 4.7 38 622-665 327-364 (377)
61 2a1j_B DNA excision repair pro 34.4 24 0.0008 31.8 3.0 24 646-670 30-53 (91)
62 2i5h_A Hypothetical protein AF 33.4 18 0.00062 38.2 2.3 22 647-668 131-152 (205)
63 3sgi_A DNA ligase; HET: DNA AM 31.0 10 0.00035 45.7 0.0 60 598-667 521-580 (615)
64 2a1j_A DNA repair endonuclease 29.1 91 0.0031 26.5 5.6 29 590-623 26-55 (63)
65 3arc_U Photosystem II 12 kDa e 29.1 18 0.00063 33.8 1.3 19 648-666 26-44 (97)
66 1kft_A UVRC, excinuclease ABC 29.1 16 0.00053 32.0 0.8 23 647-670 23-45 (78)
67 1s5l_U Photosystem II 12 kDa e 27.9 22 0.00074 35.4 1.7 19 647-665 62-80 (134)
68 3b0x_A DNA polymerase beta fam 27.4 54 0.0018 38.7 5.2 66 591-666 81-146 (575)
69 1u9l_A Transcription elongatio 25.2 1.4E+02 0.0047 26.4 6.1 41 586-629 25-65 (70)
70 2csb_A Topoisomerase V, TOP61; 22.1 2.9E+02 0.0099 30.5 9.0 59 590-672 376-434 (519)
71 1b22_A DNA repair protein RAD5 22.0 45 0.0015 32.0 2.6 47 574-628 37-83 (114)
72 3bzc_A TEX; helix-turn-helix, 21.4 89 0.0031 38.8 5.6 75 597-689 505-589 (785)
73 1vq8_Y 50S ribosomal protein L 20.9 21 0.0007 38.3 0.0 24 647-670 14-37 (241)
74 3r8n_M 30S ribosomal protein S 20.1 64 0.0022 31.1 3.2 24 645-668 13-36 (114)
75 1b22_A DNA repair protein RAD5 20.0 1.1E+02 0.0038 29.2 4.9 31 634-668 48-78 (114)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=2.3e-37 Score=324.28 Aligned_cols=183 Identities=23% Similarity=0.313 Sum_probs=167.7
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...++++||+|||+|+++.+++.+|.. .||||++|+.++.++|+++|+++||+++||++|+++|+.+.++|+
T Consensus 32 ~pfe~Lv~~IlsQqts~~~v~~~~~~l~~------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~ 105 (226)
T 1orn_A 32 NPFELLIAVVLSAQCTDALVNKVTKRLFE------KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYN 105 (226)
T ss_dssp SHHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Confidence 35566899999999999999999999964 489999999999999999999999999999999999999999887
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCCchh
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 711 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~~e 711 (1105)
+ .+|.. +++|++|||||+|||++||+|+||+++||||+||.|++.|+|+++...++++++..+++++|
T Consensus 106 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p--- 173 (226)
T 1orn_A 106 G-------EVPRD--RDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP--- 173 (226)
T ss_dssp T-------SCCSC--HHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC---
T ss_pred C-------CcHHH--HHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcC---
Confidence 7 46655 89999999999999999999999999999999999999999998756789999999998887
Q ss_pred hhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhh
Q 001299 712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 766 (1105)
Q Consensus 712 ~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~ 766 (1105)
+ +.+.+||.+||+||+.+|++++|+|+.|||++.|++|...
T Consensus 174 ---~-----------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 174 ---K-----------EEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp ---G-----------GGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred ---h-----------hhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence 1 2456999999999999999999999999999999998775
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=4.5e-37 Score=318.21 Aligned_cols=179 Identities=21% Similarity=0.222 Sum_probs=163.3
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...++++||+|||+|+++.+++.+|.. .||||++|+++++++|+++|+++||+++||++|+++|+.+.++|+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~------~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~ 101 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYP------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN 101 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTT------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 35566899999999999999999999963 589999999999999999999999999999999999999999887
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCCchh
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 711 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~~e 711 (1105)
+ .+|.. +++|++|||||+|||++||+|+||+++||||+||.|++.|+|+.. .+++++++..+++++|
T Consensus 102 g-------~~~~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p--- 168 (211)
T 2abk_A 102 G-------EVPED--RAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVP--- 168 (211)
T ss_dssp T-------SCCSC--HHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSC---
T ss_pred C-------CchHH--HHHHHhCCCCChHHHHHHHHHHCCCCcCCcCHHHHHHHHHhCCCC-CCCHHHHHHHHHHhcC---
Confidence 6 45654 899999999999999999999999999999999999999999975 4689999999999888
Q ss_pred hhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhH
Q 001299 712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 763 (1105)
Q Consensus 712 ~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yy 763 (1105)
+..| ..||++||+||+.+|++++|+|+.|||++.|+|+
T Consensus 169 ---~~~~-----------~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~ 206 (211)
T 2abk_A 169 ---AEFK-----------VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYK 206 (211)
T ss_dssp ---GGGT-----------TTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCT
T ss_pred ---hhhH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCc
Confidence 2334 4899999999999999999999999999999975
No 3
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=1.4e-36 Score=317.05 Aligned_cols=183 Identities=22% Similarity=0.281 Sum_probs=160.4
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...+|++||+|||+|+++.+++.+|.+ .||||++|+.++.++|+++|+++||+++||++|+++|+.+++.|+
T Consensus 34 ~pfe~lv~~IlsQqts~~~~~~~~~~l~~------~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~ 107 (221)
T 1kea_A 34 DPYVILITEILLRRTTAGHVKKIYDKFFV------KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYG 107 (221)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHccCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhC
Confidence 35667899999999999999999999964 389999999999999999999999999999999999999999888
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHh-CCCCCCCC--hHHHHHHHHhhCC
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL-GWVPLQPL--PGDLHIHLLKEYP 708 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RL-G~Vp~k~t--peeiE~~Leel~P 708 (1105)
+ .+|.. +++|++|||||+|||++||+|+||+++||||+||.|++.|+ |+...... ..++...++.++|
T Consensus 108 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P 178 (221)
T 1kea_A 108 G-------RVPRN--RKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVP 178 (221)
T ss_dssp T-------SCCSC--HHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSC
T ss_pred C-------CchHH--HHHHHhCCCCcHHHHHHHHHHhcCCCcceecHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhCC
Confidence 7 56655 89999999999999999999999999999999999999999 98753211 2244455555566
Q ss_pred chhhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhh
Q 001299 709 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASA 766 (1105)
Q Consensus 709 ~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~ 766 (1105)
.+.+++||++||+||+.+|++++|+|+.|||++.|++|..+
T Consensus 179 -----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 179 -----------------GGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred -----------------hhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcC
Confidence 23467999999999999999999999999999999988654
No 4
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=325.37 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=163.2
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...+|++||+|||+++++.+++.+|.+ .||||++|+.++.++|+++|+++||++ ||++|+++|+.|+++||
T Consensus 48 dpfe~LVs~ILsQQts~~~v~~~~~rL~~------~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~ 120 (287)
T 3n5n_X 48 RAYAVWVSEVMLQQTQVATVINYYTGWMQ------KWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELG 120 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HCCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhC
Confidence 35667899999999999999999999964 489999999999999999999999998 99999999999999998
Q ss_pred CCChhhhhCCCchHHHHHHhc-CCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCCch
Q 001299 632 SIDLEWLRNVPPDKVKEYLLD-IEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVM 710 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLs-LpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~~ 710 (1105)
| .+|.+ +++|++ |||||+|||++||+|+||+++|+||+||.||+.|||++....++.++++.+..+..
T Consensus 121 g-------~~p~~--~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~-- 189 (287)
T 3n5n_X 121 G-------HMPRT--AETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQ-- 189 (287)
T ss_dssp T-------CCCSS--HHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHH--
T ss_pred C-------CCcHH--HHHHHHHcCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH--
Confidence 7 47776 889998 99999999999999999999999999999999999998755556665555432110
Q ss_pred hhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhhhc
Q 001299 711 DKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVA 768 (1105)
Q Consensus 711 e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~~a 768 (1105)
..++.+.+++||++||+||+.+|++++|+|+.|||++.|++|..+..
T Consensus 190 -----------~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~ 236 (287)
T 3n5n_X 190 -----------QLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ 236 (287)
T ss_dssp -----------HHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHH
T ss_pred -----------HhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcch
Confidence 01234456799999999999999999999999999999999987643
No 5
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.3e-35 Score=310.20 Aligned_cols=183 Identities=18% Similarity=0.199 Sum_probs=158.2
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...+|++||+|||+|+++.+++.+|.. .||||++|+.+++++|+++|+++||+ +||++|+++|+.+.++|+
T Consensus 29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~------~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~~~~ 101 (225)
T 1kg2_A 29 TPYKVWLSEVMLQQTQVATVIPYFERFMA------RFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHG 101 (225)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHH------HCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHCcCCHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHhC
Confidence 35566899999999999999999999964 48999999999999999999999999 599999999999999887
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHH----HHhhC
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIH----LLKEY 707 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~----Leel~ 707 (1105)
+ .+|.. +++|++|||||+|||++||+|+||+++|+||+||.|++.|+|++....++...++. ++.++
T Consensus 102 g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~ 172 (225)
T 1kg2_A 102 G-------KFPET--FEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVT 172 (225)
T ss_dssp T-------SCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHC
T ss_pred C-------CchHH--HHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHC
Confidence 6 46665 89999999999999999999999999999999999999999655433333333333 34455
Q ss_pred CchhhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhhh
Q 001299 708 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAV 767 (1105)
Q Consensus 708 P~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~~ 767 (1105)
| .+.+..||++||+||+.+|++++|+|+.|||++.|++|..+.
T Consensus 173 p-----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 215 (225)
T 1kg2_A 173 P-----------------AVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNS 215 (225)
T ss_dssp C-----------------STTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTC
T ss_pred C-----------------cccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCC
Confidence 4 235679999999999999999999999999999999998764
No 6
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=4.8e-35 Score=324.59 Aligned_cols=192 Identities=21% Similarity=0.238 Sum_probs=167.2
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...++++||+|||+++++.+++.+|.+ .||||++|+.++.++|+++|+++||++ ||++|+++|+.++++||
T Consensus 38 ~p~~~lv~~il~qqt~~~~~~~~~~~l~~------~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~ 110 (369)
T 3fsp_A 38 DPYKVWVSEVMLQQTRVETVIPYFEQFID------RFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYG 110 (369)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhccCcHHHHHHHHHHHHH------HCCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcC
Confidence 45667899999999999999999999964 489999999999999999999999998 99999999999999998
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCC----ChHHHHHHHHhhC
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP----LPGDLHIHLLKEY 707 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~----tpeeiE~~Leel~ 707 (1105)
+ .+|.. +++|++|||||+|||++||+|+||+++|+||+||.|++.|||+++... ++.+++..+++++
T Consensus 111 g-------~~p~~--~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3fsp_A 111 G-------KVPDD--PDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIM 181 (369)
T ss_dssp T-------CCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHC
T ss_pred C-------CChhH--HHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhC
Confidence 7 46765 899999999999999999999999999999999999999999886533 3445566666666
Q ss_pred CchhhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccCCCCCCCCCCCccchhhHhhhhccccccCCCCCC
Q 001299 708 PVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSE 779 (1105)
Q Consensus 708 P~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICtarkP~Cd~CPLr~~C~yyas~~asar~alp~p~~ 779 (1105)
| .+.++.||++||+||+.+|++++|+|+.|||++.|++|..+.. ..+|.+..
T Consensus 182 p-----------------~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~---~~~PvK~~ 233 (369)
T 3fsp_A 182 A-----------------YENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA---EELPVKMK 233 (369)
T ss_dssp C-----------------SSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCG---GGCSCCCC
T ss_pred C-----------------hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCc---ccCCcccc
Confidence 5 2345699999999999999999999999999999999998753 34554433
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.96 E-value=3.7e-29 Score=261.02 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=146.0
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCC------HHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVD------WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 625 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpT------pEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~ 625 (1105)
.+...++++||+|||+|+++.+++.+|.+ .++|+ |++|+.++.++|+++|+++||+++||++|+++|+.
T Consensus 29 dpfe~Lv~~ILsQqts~~~v~~~~~~L~~-----~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~ 103 (218)
T 1pu6_A 29 LKFEALLGAVLTQNTKFEAVLKSLENLKN-----AFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGN 103 (218)
T ss_dssp TSHHHHHHHHHTTTSCHHHHHHHHHHHHH-----TTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----ccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 35667899999999999999999999975 24788 99999999999999999999999999999999999
Q ss_pred HHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHh
Q 001299 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLK 705 (1105)
Q Consensus 626 Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Lee 705 (1105)
+.+++++ ++.+ +..+++++|++|||||+|||+|||+|+||+++||||+||.|++.|+||. .++|++++..+++
T Consensus 104 i~~~~~~--l~~~---~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 104 ILKDFQS--FENF---KQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEK 176 (218)
T ss_dssp HHHHHSS--HHHH---HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHH
T ss_pred HHHhcCC--hhhc---cchHHHHHHHcCCCcCHHHHHHHHHHHCCCCccccCHHHHHHHHHcCCC--CCCHHHHHHHHHH
Confidence 9998876 3333 3445699999999999999999999999999999999999999999997 3689999999888
Q ss_pred hCC-chhh---hhhhhhhhcccCChhhHHHHHHHHHHHhHH
Q 001299 706 EYP-VMDK---IQMYLWPRLCYLDQKTLYELHYQMITFGKI 742 (1105)
Q Consensus 706 l~P-~~e~---Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ 742 (1105)
.+| .... +...-|. +.+.+++||.+||.|||.
T Consensus 177 ~~p~~lp~~~~~~~~~~~-----~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 177 GVQENLNSALALYENTIS-----LAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHTTHHHHHHTTTTCSC-----HHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCcchhhhcccccc-----hHHHHHHHHHHHHHHhhh
Confidence 433 1110 1111121 256788999999999997
No 8
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.92 E-value=1.2e-24 Score=229.66 Aligned_cols=161 Identities=13% Similarity=0.123 Sum_probs=141.7
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 632 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~Gg 632 (1105)
+...++++||+||++|+++.+++.+|.++......||||++|+.+++++| +.+||+++||+||+++|+.+.+ |.
T Consensus 60 pfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~L----r~~Gl~~~Ka~~l~~~A~~~~~--g~ 133 (232)
T 4b21_A 60 PYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETL----HECGFSKLKSQEIHIVAEAALN--KQ 133 (232)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHH----HTTTCCHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHH----HHcCCcHHHHHHHHHHHHHHHh--CC
Confidence 45568999999999999999999999654211233899999999999985 8899999999999999999987 67
Q ss_pred C-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeec-chHHHHHHHHhCCCCCCCChHHHHHHHHhhCCc
Q 001299 633 I-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 709 (1105)
Q Consensus 633 l-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPV-DThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~ 709 (1105)
+ +++.|..+|+++++++|++|||||+|||+|||+|+||++ +||| |+||+|++.|++..+..+++.+++...+.+-|+
T Consensus 134 ~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P~ 213 (232)
T 4b21_A 134 IPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPY 213 (232)
T ss_dssp SCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTTC
T ss_pred CCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCCCCHHHHHHHHHHccCH
Confidence 8 899999999999999999999999999999999999997 8999 999999999996555556788888888888897
Q ss_pred hhhhhhhhhh
Q 001299 710 MDKIQMYLWP 719 (1105)
Q Consensus 710 ~e~Iqk~lW~ 719 (1105)
....+.++|.
T Consensus 214 rs~A~~yLw~ 223 (232)
T 4b21_A 214 RTIAAWYLWQ 223 (232)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777888886
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.90 E-value=2.4e-24 Score=223.05 Aligned_cols=155 Identities=13% Similarity=0.055 Sum_probs=131.5
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHH
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLNRLVEL 629 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lG--f~n~KAk~Ik~lA~~Ive~ 629 (1105)
.+...++++||+|||+|+++.+++.+|. ++|+.+++++|+++|+++| |+++||+||+++|+++.+.
T Consensus 32 ~~fe~Lv~~ILsqqts~~~~~~~~~~L~------------~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 32 VWFRELTLCLLTANSSFISAYQALNCLG------------QKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHG------------GGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 3556689999999999999999999982 5689999999999999877 9999999999999987654
Q ss_pred hCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH-hcCCeeeecchHHHHHHHHhCCCCCCCChHHHHHHHHhhCC
Q 001299 630 HGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL-SLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 708 (1105)
Q Consensus 630 ~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf-algrpvfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P 708 (1105)
+++ +++.+...++++++++|++|||||+|||+|||+| ++ .++||||+||.|++.|+|+++.. .+
T Consensus 100 ~~~-~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~~-------------~~ 164 (207)
T 3fhg_A 100 LKE-EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGET-------------NV 164 (207)
T ss_dssp HHH-HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCCC-------------CC
T ss_pred hhh-hHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecHHHHHHHHHcCCCCcc-------------cc
Confidence 332 5777777888889999999999999999999998 66 78999999999999999998641 11
Q ss_pred chhhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccC
Q 001299 709 VMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 746 (1105)
Q Consensus 709 ~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICta 746 (1105)
..++...+.++|..|+.||+.+|..
T Consensus 165 -------------k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 165 -------------KQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp -------------SCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------------ccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 0134566779999999999999864
No 10
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.90 E-value=6.7e-24 Score=222.56 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=133.3
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+...++++||+||++|.++.+++.+|.+ ..+.|||++|+.+++++| +++||+++||+||+++|+.+.+ |
T Consensus 60 dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~----~~G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~--g 129 (225)
T 2yg9_A 60 DPFGRLVRSVAGQQLSVKAAQAIYGRLEG----LPGGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVS--G 129 (225)
T ss_dssp CHHHHHHHHHHHTTSCHHHHHHHHHHHHT----STTCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--T
T ss_pred CHHHHHHHHHHhCcChHHHHHHHHHHHHH----HhCcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHh--C
Confidence 34556899999999999999999999974 234599999999999986 8999999999999999999988 7
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeec-chHHHHHHHHhCCCCCCCChHHHHHHHHhhCCc
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPV-DVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 709 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPV-DThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~ 709 (1105)
.++++.|..+|+++++++|++|||||+|||+|||+|+||++ +||| |+||+|++.|+| + +++++...+.+.|+
T Consensus 130 ~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~----~~~~~~~~e~~~P~ 203 (225)
T 2yg9_A 130 QIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P----GEDWRDVTARWAPY 203 (225)
T ss_dssp SSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T----TSCHHHHHHHHTTC
T ss_pred CcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C----HHHHHHHHHHcCCH
Confidence 78999999999999999999999999999999999999998 8999 999999999998 2 34566778888886
Q ss_pred hhhhhhhhhh
Q 001299 710 MDKIQMYLWP 719 (1105)
Q Consensus 710 ~e~Iqk~lW~ 719 (1105)
....+.++|.
T Consensus 204 r~~a~~~Lw~ 213 (225)
T 2yg9_A 204 RSLASRYLWA 213 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555666663
No 11
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.90 E-value=6.8e-24 Score=223.43 Aligned_cols=149 Identities=16% Similarity=0.079 Sum_probs=130.8
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhh-ccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEER-SHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELH 630 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er-~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~ 630 (1105)
.+...++++||+|||+|+++.+++.+|.++ |. .||||++|+.++.++| +++||+++||++|+++|+.+.+
T Consensus 50 dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~---~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~-- 120 (233)
T 2h56_A 50 NPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG---ALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVES-- 120 (233)
T ss_dssp CHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS---CCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---CCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHh--
Confidence 355668999999999999999999999654 32 3689999999999986 8999999999999999999988
Q ss_pred CCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecchHHHHHHHHhCCCCC-CCChHHHHHHHHhhCC
Q 001299 631 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPL-QPLPGDLHIHLLKEYP 708 (1105)
Q Consensus 631 GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVDThV~RIl~RLG~Vp~-k~tpeeiE~~Leel~P 708 (1105)
|.++++.|..+|+++++++|++|||||+|||+|||+|+||++ +||||+|+.|++.|+|+... .+++.+++..++.+.|
T Consensus 121 ~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P 200 (233)
T 2h56_A 121 GRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAP 200 (233)
T ss_dssp TSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTT
T ss_pred CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCCCCCCHHHHHHHHHHcCc
Confidence 446889899999999999999999999999999999999998 99999999999999877542 3577888887777777
Q ss_pred c
Q 001299 709 V 709 (1105)
Q Consensus 709 ~ 709 (1105)
+
T Consensus 201 ~ 201 (233)
T 2h56_A 201 Y 201 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 12
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.90 E-value=5.3e-24 Score=222.62 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=125.3
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcC--ChHHHHHHHHHHHH--HHH
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLN--RLV 627 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lG--f~n~KAk~Ik~lA~--~Iv 627 (1105)
.+...++++||+|||+|.++.+++.+|. +.|+.++.++|+++|+++| |+++||+||+++++ .+.
T Consensus 43 ~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~ 110 (214)
T 3fhf_A 43 EWFKELCFCILTANFTAEGGIRIQKEIG------------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIK 110 (214)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHT------------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHH
T ss_pred ChHHHHHHHHHcCCCCHHHHHHHHHHHH------------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHH
Confidence 4666789999999999999999999994 5699999999999999999 99999999999998 554
Q ss_pred HHhCCCChhhhhCC-CchHHHHHHh-cCCCCcHHHHHHHHHHhcCCeeee-cchHHHHHHHHhCCCCCCCChHHHHHHHH
Q 001299 628 ELHGSIDLEWLRNV-PPDKVKEYLL-DIEGLGLKSVECVRLLSLQHIAFP-VDVNVGRIAVRLGWVPLQPLPGDLHIHLL 704 (1105)
Q Consensus 628 e~~GglDLE~Lr~v-P~deaReeLL-sLpGIG~KTAd~ILLfalgrpvfP-VDThV~RIl~RLG~Vp~k~tpeeiE~~Le 704 (1105)
+.++ .+ +..+++++|+ +|||||+|||++||+++ +.+.|| ||+||.|++.||||++.. +
T Consensus 111 ~~~~--------~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~--~-------- 171 (214)
T 3fhf_A 111 DIVE--------SFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEI--P-------- 171 (214)
T ss_dssp HHHH--------HSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSC--C--------
T ss_pred HHhc--------ccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCC--C--------
Confidence 4443 33 4567799999 99999999999999998 667777 999999999999998631 1
Q ss_pred hhCCchhhhhhhhhhhcccCChhhHHHHHHHHHHHhHHhccC
Q 001299 705 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKK 746 (1105)
Q Consensus 705 el~P~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ICta 746 (1105)
+ .++...+.++|..|+.||+.+|.+
T Consensus 172 k-----------------~lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 172 K-----------------TLSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp S-----------------SCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred C-----------------cCCHHHHHHHHHHHHHHHHHHCCC
Confidence 1 123456779999999999999975
No 13
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.89 E-value=4e-23 Score=217.23 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=138.7
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGS 632 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~Gg 632 (1105)
+...++++||+||++++++.+++.+| ++......||||++|+.++.++| +++||+++||+||+++|+.+.+ |.
T Consensus 50 ~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~--g~ 122 (228)
T 3s6i_A 50 PYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS--GL 122 (228)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH--TS
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc--CC
Confidence 45568899999999999999999999 64101135899999999999985 8999999999999999999986 77
Q ss_pred C-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecc-hHHHHHHHHhCCCCCCCChHHHHHHHHhhCCc
Q 001299 633 I-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVD-VNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 709 (1105)
Q Consensus 633 l-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVD-ThV~RIl~RLG~Vp~k~tpeeiE~~Leel~P~ 709 (1105)
+ +++.|..+++++++++|++|||||+|||+|||+|+||++ +|||| .|++|++.|+...+..+++.+++...+.+-|+
T Consensus 123 ~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~~~~~~~~~~e~w~P~ 202 (228)
T 3s6i_A 123 IPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICAPF 202 (228)
T ss_dssp SCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHHGGGTTC
T ss_pred CCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCH
Confidence 7 799999999999999999999999999999999999998 89996 67999999985555556888888888888887
Q ss_pred hhhhhhhhhh
Q 001299 710 MDKIQMYLWP 719 (1105)
Q Consensus 710 ~e~Iqk~lW~ 719 (1105)
....+.+||.
T Consensus 203 r~~A~~yLw~ 212 (228)
T 3s6i_A 203 RTAAAWYLWK 212 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666777775
No 14
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.88 E-value=1.9e-22 Score=218.69 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=136.3
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhh-ccC-------CCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEER-SHD-------KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 624 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er-~~~-------~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~ 624 (1105)
+...++++||+||+++.++.+++.+|.++ |.. ...||+|++|+.+++++|.+ +|+.. ||++|+++|+
T Consensus 115 pfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~----~g~g~-Ra~~I~~~A~ 189 (290)
T 3i0w_A 115 PFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE----CTAGF-RAKYLKDTVD 189 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH----TTCGG-GHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH----cCCch-HHHHHHHHHH
Confidence 45568899999999999999999999654 321 23589999999999999855 56654 8999999999
Q ss_pred HHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecchHHHHHHHHhCCCCCCCChHHHHHHH
Q 001299 625 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHL 703 (1105)
Q Consensus 625 ~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVDThV~RIl~RLG~Vp~k~tpeeiE~~L 703 (1105)
.+.+ |.++|+.|..++.++++++|++|||||+|||+|||+|+||++ +||||+||+|++.|+|+.+ .+++++++..+
T Consensus 190 ~i~~--g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-~~~~~~i~~~~ 266 (290)
T 3i0w_A 190 RIYN--GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-DVSLKKIRDFG 266 (290)
T ss_dssp HHHT--TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-TCCHHHHHHHH
T ss_pred HHHh--CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-CCCHHHHHHHH
Confidence 9987 567999999999999999999999999999999999999997 9999999999999999875 46788888777
Q ss_pred H-hhCCchhhhhhhhhhhcccCChhhHHHHHHHHHHHhHH
Q 001299 704 L-KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKI 742 (1105)
Q Consensus 704 e-el~P~~e~Iqk~lW~rL~~ld~e~l~eLH~lLIdfGR~ 742 (1105)
. .+-| |. ...+..|+.+||.
T Consensus 267 ~~~~~p---------~~----------~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 267 REKFGS---------LS----------GFAQQYLFYYARE 287 (290)
T ss_dssp HHHHGG---------GH----------HHHHHHHHHHHHH
T ss_pred Hhhcch---------HH----------HHHHHHHHHhhhh
Confidence 3 3333 22 3566777777775
No 15
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.86 E-value=5.6e-22 Score=220.95 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=118.5
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhh-ccC--------CCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHH
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEER-SHD--------KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 623 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er-~~~--------~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA 623 (1105)
+...+|++||+||+++.++.+++.+|.++ |.. ...||+|++|+.++.+ +.|+.+||. .||+||+++|
T Consensus 152 pfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~e---e~Lr~~Gl~-~RA~~I~~~A 227 (360)
T 2xhi_A 152 PIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVE---AHLRKLGLG-YRARYVSASA 227 (360)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHH---HHHHHTTCT-THHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHH---HHHHHcCCc-HHHHHHHHHH
Confidence 44568899999999999999999999653 321 1368999999999654 357999995 6999999999
Q ss_pred HHHHHHhCC-CChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecchHHHHHHHHh-CCCC
Q 001299 624 NRLVELHGS-IDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRL-GWVP 691 (1105)
Q Consensus 624 ~~Ive~~Gg-lDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVDThV~RIl~RL-G~Vp 691 (1105)
+.+.+.||| ++|+.|..+|.++++++|++|||||+|||+|||+|+||++ +||||+||.|++.|+ |+.+
T Consensus 228 ~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~ 298 (360)
T 2xhi_A 228 RAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHP 298 (360)
T ss_dssp HHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCC
T ss_pred HHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCccc
Confidence 999998766 6899999999999999999999999999999999999998 999999999999996 9875
No 16
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.86 E-value=6.2e-22 Score=207.63 Aligned_cols=122 Identities=20% Similarity=0.078 Sum_probs=109.4
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHH
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERG--QQNIIAGRIKEFLNRLVEL 629 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lG--f~n~KAk~Ik~lA~~Ive~ 629 (1105)
.+...++++||+|||+|+++.+++.+| |+.|+.++.++|+++|+++| |+++||+||+++|+.+
T Consensus 49 ~~fe~Lv~~ILsqqts~~~~~~a~~~L------------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i--- 113 (219)
T 3n0u_A 49 DLFCELSFCVLTANWSAEGGIRAQKEI------------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL--- 113 (219)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHH------------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT---
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHH------------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH---
Confidence 356678999999999999999999998 46799999999999999999 9999999999999876
Q ss_pred hCCCChhhhhCCCchHHHHHHh-cCCCCcHHHHHHHHHHhcCC-eeeecchHHHHHHHHhCCCCC
Q 001299 630 HGSIDLEWLRNVPPDKVKEYLL-DIEGLGLKSVECVRLLSLQH-IAFPVDVNVGRIAVRLGWVPL 692 (1105)
Q Consensus 630 ~GglDLE~Lr~vP~deaReeLL-sLpGIG~KTAd~ILLfalgr-pvfPVDThV~RIl~RLG~Vp~ 692 (1105)
| +|..+...+..+++++|+ +|||||+|||+|||+| +|+ ++||||+||.|++.|+||++.
T Consensus 114 -g--~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~ 174 (219)
T 3n0u_A 114 -G--KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQE 174 (219)
T ss_dssp -T--THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSS
T ss_pred -H--HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCc
Confidence 2 344555677888899999 9999999999999999 777 899999999999999999864
No 17
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.84 E-value=9e-21 Score=204.15 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=127.4
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhh-ccC------CCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEER-SHD------KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 625 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er-~~~------~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~ 625 (1105)
+...++++||+||++++++.+++.+|.++ |.. ...||||++|+.++.++| +.+||+++||++|+++|+.
T Consensus 113 ~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~~A~~ 188 (282)
T 1mpg_A 113 AFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLANA 188 (282)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHH
Confidence 44568899999999999999999999544 332 256899999999999986 8999999999999999999
Q ss_pred HHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecchHHHHHHHHhCCCCCCCChHHHHHHHH
Q 001299 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 704 (1105)
Q Consensus 626 Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVDThV~RIl~RLG~Vp~k~tpeeiE~~Le 704 (1105)
+.+ |.++++.+ .+.++++++|++|||||+|||+|||+|+||++ +||||+|+.| ++++ ..++++++..++
T Consensus 189 ~~~--~~~~~~~~--~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----~~~~~~~~~~~~ 258 (282)
T 1mpg_A 189 ALE--GTLPMTIP--GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----GMTPAQIRRYAE 258 (282)
T ss_dssp HHH--TCSCSSCC--SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----TCCHHHHHHHHG
T ss_pred HHc--CCCCcccc--CCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----cCCHHHHHHHHH
Confidence 998 44566655 56778999999999999999999999999998 9999888877 5553 367888988888
Q ss_pred hhCCchhhhhhhhhh
Q 001299 705 KEYPVMDKIQMYLWP 719 (1105)
Q Consensus 705 el~P~~e~Iqk~lW~ 719 (1105)
.+.|.....+.++|.
T Consensus 259 ~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 259 RWKPWRSYALLHIWY 273 (282)
T ss_dssp GGTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHH
Confidence 888855555555553
No 18
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.83 E-value=5.7e-21 Score=207.16 Aligned_cols=154 Identities=21% Similarity=0.172 Sum_probs=127.2
Q ss_pred ccccceeceecccccHHHHHHHHHHhhhh-ccC-------CCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001299 553 KTTPKKNSDNTVQQDWDLLRRIYSTGEER-SHD-------KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLN 624 (1105)
Q Consensus 553 ~~~~~vgaILsQQTsw~~V~ka~~rL~er-~~~-------~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~ 624 (1105)
+...++.+||+||+++.++.+++.+|.++ |.. ...||+|++|+.++.++| +++||+++||++|+++|+
T Consensus 118 ~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rKa~~i~~~A~ 193 (295)
T 2jhn_A 118 VFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRKAELIVEIAK 193 (295)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHH
Confidence 45568999999999999999999999654 321 134899999999998885 899999999999999998
Q ss_pred HHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCe-eeecc-hHHHHHHHHh-CCCCCCCChHHHHH
Q 001299 625 RLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVD-VNVGRIAVRL-GWVPLQPLPGDLHI 701 (1105)
Q Consensus 625 ~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrp-vfPVD-ThV~RIl~RL-G~Vp~k~tpeeiE~ 701 (1105)
. | +++.|..+|+++++++|++|||||+|||+|||+|+|| + +|||| .|++|++.|+ |+....+++.+++.
T Consensus 194 ~-----g--~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~~~~~~~~~~ 265 (295)
T 2jhn_A 194 E-----E--NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEIQSAEKVREI 265 (295)
T ss_dssp C-----S--SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred C-----C--CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 7 3 7888889999999999999999999999999999999 7 99995 5667799998 77542467788888
Q ss_pred HHHhhCCchhhhhhhhh
Q 001299 702 HLLKEYPVMDKIQMYLW 718 (1105)
Q Consensus 702 ~Leel~P~~e~Iqk~lW 718 (1105)
..+.+.|+....+.++|
T Consensus 266 ~~e~~~p~r~~a~~~Lw 282 (295)
T 2jhn_A 266 ARERFGRFARDILFYLF 282 (295)
T ss_dssp HHHHTGGGHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHH
Confidence 87877774444444444
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.82 E-value=6.9e-21 Score=191.54 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=104.0
Q ss_pred cccccceeceecccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 001299 552 KKTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHG 631 (1105)
Q Consensus 552 k~~~~~vgaILsQQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~G 631 (1105)
.+.+.+|++||+|||++++|.+++.+|.+ .+|||++|++|+.++|+++|+++|||++||++|+++++.++.
T Consensus 30 dP~~vLVs~ILsqQT~~~~v~~~~~~l~~------~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp--- 100 (161)
T 4e9f_A 30 DPWKLLIATIFLNRTSGKMAIPVLWKFLE------KYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLT--- 100 (161)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHHH------HSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHhhCcHHHHHHHHHHHHH------HCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCC---
Confidence 46677899999999999999999999964 489999999999999999999999999999999999986654
Q ss_pred CCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCC--eeeecchHHHHHHHHh
Q 001299 632 SIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH--IAFPVDVNVGRIAVRL 687 (1105)
Q Consensus 632 glDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgr--pvfPVDThV~RIl~RL 687 (1105)
.+ +++|++|||||+|||++|++||+|. .++|+|.+++|++.|+
T Consensus 101 -----------~~--~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl 145 (161)
T 4e9f_A 101 -----------KQ--WKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 145 (161)
T ss_dssp -----------SC--CSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHH
T ss_pred -----------CC--hhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHH
Confidence 22 4679999999999999999999995 7999999999999987
No 20
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=81.78 E-value=5.8 Score=41.26 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=51.6
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCC--hHHHHHHHHHHHHHHH---HHhCCC
Q 001299 564 VQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQ--QNIIAGRIKEFLNRLV---ELHGSI 633 (1105)
Q Consensus 564 QQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf--~n~KAk~Ik~lA~~Iv---e~~Ggl 633 (1105)
--.+|..+.+-...+++ ....++|+.||..++++|++++..-|. ++.|.+.++.-|+.++ +++|++
T Consensus 42 AGLSW~tIL~KRe~fR~----AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf 112 (186)
T 2jg6_A 42 AGLSWLTILKKKEAYEE----AFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSF 112 (186)
T ss_dssp TTSCHHHHHHHHHHHHH----HTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred ccCCHHHHHHhHHHHHH----HHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34589999998888864 356789999999999999999999886 4567777777777655 456664
No 21
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=81.03 E-value=3.6 Score=42.68 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=51.4
Q ss_pred ccccHHHHHHHHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHH---HhCCC
Q 001299 564 VQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQ--QNIIAGRIKEFLNRLVE---LHGSI 633 (1105)
Q Consensus 564 QQTsw~~V~ka~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf--~n~KAk~Ik~lA~~Ive---~~Ggl 633 (1105)
--.+|..+.+-...+++ ....++|+.||..++++|++++..-|. ++.|.+.++.-|+.+++ +||++
T Consensus 42 AGLSW~tIL~KRe~fr~----AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf 112 (183)
T 2ofk_A 42 AGLSWITVLKKRENYRA----CFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESF 112 (183)
T ss_dssp TTSCHHHHHHTHHHHHH----HTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ccCCHHHHHHhHHHHHH----HHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34589999988887764 346689999999999999999999886 55677778877777654 46653
No 22
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=79.93 E-value=1.8 Score=36.97 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
|+.|++.||+ ++.+...+ .+.|..++|||+++|..|..+
T Consensus 27 a~~Ll~~fgs--~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 27 ARRLLKHFGS--VERVFTAS----VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHHHHHCS--HHHHHHCC----HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHhcCCCCCHHHHHHHHHH
Confidence 4445555665 55555443 457999999999999988765
No 23
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=77.83 E-value=3.6 Score=49.19 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHh
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 687 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RL 687 (1105)
|+.|.+.|+ +++.|.... .++|.+|+|||+++|+.|..|- -|-+.+.++.+|
T Consensus 525 a~~La~~f~--sl~~l~~a~----~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L 576 (586)
T 4glx_A 525 AAGLAAYFG--TLEALEAAS----IEELQKVPDVGIVVASHVHNFF-------AEESNRNVISEL 576 (586)
T ss_dssp HHHHHHHHC--SHHHHHHCC----HHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHH
T ss_pred HHHHHHHcC--CHHHHHccC----HHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHH
Confidence 333455555 466676654 3579999999999999998773 244566666665
No 24
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=76.55 E-value=2.1 Score=37.52 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
|+.|.+.||. ++.+...+ .++|.+++|||+++|..|+.+
T Consensus 37 A~~Ll~~fgs--l~~l~~a~----~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKYMGG--LQGLRNAS----VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHSC--HHHHHHCC----HHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHCC----HHHHHHCCCCCHHHHHHHHHH
Confidence 3444455664 55565544 357999999999999988765
No 25
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=76.23 E-value=2.9 Score=37.71 Aligned_cols=40 Identities=28% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHh
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfa 668 (1105)
|+.|++.||+ ++.+...+ .++|..++|||.++|..|+.+.
T Consensus 45 A~~Ll~~fgs--~~~l~~as----~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 45 SQTLLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHSS--HHHHHSCC----HHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 3444555664 56665554 3579999999999999987663
No 26
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=75.93 E-value=1.8 Score=45.79 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=23.6
Q ss_pred chHHHHHHhcCCCCcHHHHHHHHHHhcCC
Q 001299 643 PDKVKEYLLDIEGLGLKSVECVRLLSLQH 671 (1105)
Q Consensus 643 ~deaReeLLsLpGIG~KTAd~ILLfalgr 671 (1105)
-+++++.|.+|||||+|||.-+.++-+.+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 46789999999999999997776665543
No 27
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=75.32 E-value=3 Score=37.37 Aligned_cols=40 Identities=28% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHh
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfa 668 (1105)
|+.|++.||+ ++.+...+ .+.|..++|||+++|..|+.+.
T Consensus 32 A~~Ll~~fgs--l~~l~~a~----~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 32 SQTLLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHTCB--HHHHHHCC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 4455556664 55555444 3578999999999999887663
No 28
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=72.87 E-value=2.4 Score=45.35 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.0
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHhcCC
Q 001299 644 DKVKEYLLDIEGLGLKSVECVRLLSLQH 671 (1105)
Q Consensus 644 deaReeLLsLpGIG~KTAd~ILLfalgr 671 (1105)
+++++.|..|||||+|||.-+.++-+.+
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999997776665543
No 29
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=70.29 E-value=6.9 Score=47.58 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred CHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHH-------------------------HHHHHHHhCCCChhhhhCCCch
Q 001299 590 DWEAVRCADESEIADAIKERGQQNIIAGRIKEF-------------------------LNRLVELHGSIDLEWLRNVPPD 644 (1105)
Q Consensus 590 TpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~l-------------------------A~~Ive~~GglDLE~Lr~vP~d 644 (1105)
++.+|..+..++|..+ -||....|..|.+. |+.|.+.||. ++.|...+
T Consensus 470 ~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgs--l~~l~~As-- 542 (671)
T 2owo_A 470 TPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT--LEALEAAS-- 542 (671)
T ss_dssp SGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCS--HHHHHTCC--
T ss_pred CHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCC--HHHHHhCC--
Confidence 5566666666655322 46666556555543 2233444543 56666554
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHh
Q 001299 645 KVKEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 645 eaReeLLsLpGIG~KTAd~ILLfa 668 (1105)
.++|.+++|||+++|..|..|.
T Consensus 543 --~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 543 --IEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp --HHHHTTSTTCCHHHHHHHHHHH
T ss_pred --HHHHhhcCCCCHHHHHHHHHHH
Confidence 3578999999999999987663
No 30
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=63.12 E-value=4.2 Score=42.92 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCC
Q 001299 647 KEYLLDIEGLGLKSVECVRLLSLQH 671 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLfalgr 671 (1105)
.+.|.++||||+|||+-|.+---++
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999886554343
No 31
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=61.96 E-value=3 Score=41.36 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHH
Q 001299 593 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 666 (1105)
Q Consensus 593 aLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILL 666 (1105)
+|=.|+.++|.. --|++..||+.|. .||.+ .. .++|++++|||.++.+.+--
T Consensus 56 niNtA~~~eL~~---LpGiGp~~A~~II--------~~GpF---------~s--vedL~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 56 DLNNTNIAAFIQ---YRGLYPTLAKLIV--------KNAPY---------ES--VEDVLNIPGLTERQKQILRE 107 (134)
T ss_dssp ETTTSCGGGGGG---STTCTHHHHHHHH--------HTCCC---------SS--GGGGGGCTTCCHHHHHHHHH
T ss_pred eCcccCHHHHHH---CCCCCHHHHHHHH--------HcCCC---------CC--HHHHHhCCCCCHHHHHHHHH
Confidence 345566666643 3588888887776 36764 11 46899999999998776643
No 32
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=60.20 E-value=16 Score=40.55 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 600 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 600 EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
++|+.++.-.|-..-|++..+.+|..|.. ++. .+. . ...|.+|||||+++|+.|.-+
T Consensus 20 ~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~~-------~i~--~-~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 20 TELANFEKNVSQAIHKYNAYRKAASVIAK-YPH-------KIK--S-GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH-CSS-------CCC--C-HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHh-CCc-------ccc--C-HHHHhcCCCCcHHHHHHHHHH
Confidence 45566665455555588888888887765 322 121 1 345999999999999999866
No 33
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=56.88 E-value=7.9 Score=43.49 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCC-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHH
Q 001299 610 GQQNIIAGRIKEFLNRLVELHGSI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 664 (1105)
Q Consensus 610 Gf~n~KAk~Ik~lA~~Ive~~Ggl-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~I 664 (1105)
|.....|+.|.++.. .|.+ -|+.|+.-+.......|++|+|||+|||..+
T Consensus 68 GIG~~~A~kI~E~l~-----tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l 118 (360)
T 2ihm_A 68 YFGEHSTRVIQELLE-----HGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (360)
T ss_dssp TCCHHHHHHHHHHHH-----HSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-----cCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHH
Confidence 444556666666543 3554 2444443233445789999999999999877
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=56.57 E-value=5.7 Score=34.50 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.4
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 001299 647 KEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLf 667 (1105)
...|.+|||||+++|..|+.+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 467999999999999999864
No 35
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=54.72 E-value=21 Score=40.05 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 600 SEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 600 EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
++|+.++.-.| ..-|++..+.+|..|.. ++. + +.. ...|.+|||||+++|+.|.-+
T Consensus 25 ~~ia~~~e~~g-~~~r~~AYr~Aa~~l~~-l~~-~------i~~---~~~l~~lpGIG~~~A~kI~E~ 80 (360)
T 2ihm_A 25 ETLAEAAGFEA-NEGRLLSFSRAASVLKS-LPC-P------VAS---LSQLHGLPYFGEHSTRVIQEL 80 (360)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHH-CSS-C------CCS---GGGGTTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHh-CCc-c------cCC---HHHHhcCCCCCHHHHHHHHHH
Confidence 44555555566 55688888888887765 332 2 211 224999999999999999866
No 36
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=54.02 E-value=9.1 Score=42.57 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCC-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHH
Q 001299 610 GQQNIIAGRIKEFLNRLVELHGSI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 664 (1105)
Q Consensus 610 Gf~n~KAk~Ik~lA~~Ive~~Ggl-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~I 664 (1105)
|.....|+.|.++.. .|.+ -|+.|+.-+.......|++|+|||+|||..+
T Consensus 64 GIG~~~A~kI~E~l~-----tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l 114 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLA-----TGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKF 114 (335)
T ss_dssp TCCHHHHHHHHHHHH-----HSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-----hCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHH
Confidence 444566777766653 2544 2455554443345889999999999999877
No 37
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=52.38 E-value=15 Score=37.86 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
|+.|++.||. ++.+...+ .++|..++|||+++|..+..+
T Consensus 175 a~~Ll~~fgs--~~~l~~a~----~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 175 AERILERFGS--LERFFTAS----KAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHHHSS--HHHHTTCC----HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 4455566765 55565544 347899999999999998765
No 38
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=52.36 E-value=21 Score=40.42 Aligned_cols=59 Identities=12% Similarity=-0.079 Sum_probs=37.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH-hcCC
Q 001299 601 EIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL-SLQH 671 (1105)
Q Consensus 601 ELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf-algr 671 (1105)
+|+.++.-.| ..-|++..+.+|..|.. ++. ++. . .+.|.+|||||.++|+.|.-+ .-|.
T Consensus 45 ~ia~~~e~~g-~~~rv~AYr~Aa~~l~~-l~~-~i~------~---~~~l~~lpGIG~~ia~kI~E~l~tG~ 104 (381)
T 1jms_A 45 ILAENDELRE-NEGSCLAFMRASSVLKS-LPF-PIT------S---MKDTEGIPCLGDKVKSIIEGIIEDGE 104 (381)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHT-CSS-CCC------S---GGGGTTCSSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhC-CcHHHHHHHHHHHHHHh-CCc-ccc------C---HHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 3344444456 45577777788877755 222 221 1 224999999999999999866 3443
No 39
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=52.25 E-value=21 Score=39.74 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=12.4
Q ss_pred HHhcCCCCcHHHHHHHHHH
Q 001299 649 YLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 649 eLLsLpGIG~KTAd~ILLf 667 (1105)
.|.+|||||+++|+.|.-+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHHH
Confidence 4667777777777666544
No 40
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=51.61 E-value=23 Score=36.63 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHh
Q 001299 647 KEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLfa 668 (1105)
.+.|.++||||+|+|+-|...-
T Consensus 106 ~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 106 ARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 5689999999999999987654
No 41
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=51.54 E-value=5.3 Score=37.44 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 593 AVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 593 aLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
+|-.|+.++|.. | -|+...+|+.|.+ +|++ .+ +++|+.++|||+++.+-+.-+
T Consensus 19 diNtAs~~eL~~-l--pGIG~~~A~~IV~--------~GpF---------~s--~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 19 DLNNTNIAAFIQ-Y--RGLYPTLAKLIVK--------NAPY---------ES--VEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp ETTTSCGGGGGG-S--TTCTTHHHHHHHH--------HCCC---------SS--GGGGGGCTTCCHHHHHHHHHT
T ss_pred eCCcCCHHHHhH-C--CCCCHHHHHHHHH--------cCCC---------CC--HHHHHhccCCCHHHHHHHHHH
Confidence 355566666643 2 3555556665554 4664 12 457889999999998777543
No 42
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=49.05 E-value=9 Score=40.38 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhcCCeee---ecchHHHHHHHHhCCC
Q 001299 645 KVKEYLLDIEGLGLKSVECVRLLSLQHIAF---PVDVNVGRIAVRLGWV 690 (1105)
Q Consensus 645 eaReeLLsLpGIG~KTAd~ILLfalgrpvf---PVDThV~RIl~RLG~V 690 (1105)
++...|.+++|||+|+|..||.. |+-..+ +++..+.|+..-=|+-
T Consensus 85 ~lf~~L~sv~GIGpk~A~~Ils~-~~~~~l~~aI~~~d~~~L~~vpGIG 132 (212)
T 2ztd_A 85 DLFLTLLSVSGVGPRLAMAALAV-HDAPALRQVLADGNVAALTRVPGIG 132 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHTSTTCC
T ss_pred HHHHHhcCcCCcCHHHHHHHHHh-CCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 34678999999999999999763 443322 4455566654433553
No 43
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.58 E-value=13 Score=42.22 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCC-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHH
Q 001299 610 GQQNIIAGRIKEFLNRLVELHGSI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 664 (1105)
Q Consensus 610 Gf~n~KAk~Ik~lA~~Ive~~Ggl-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~I 664 (1105)
|....-|+.|.++.. .|.+ -|+.|+.-+.......|++|+|||+|||..+
T Consensus 87 GIG~~ia~kI~E~l~-----tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 87 CLGDKVKSIIEGIIE-----DGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp SCCHHHHHHHHHHHH-----HSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-----cCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 444556666666543 2543 2445543234455789999999999999877
No 44
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=47.86 E-value=22 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001299 586 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNR 625 (1105)
Q Consensus 586 ~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~ 625 (1105)
.++-|.++|+.++.++|..+ .|+...||..|+..|+.
T Consensus 26 ~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 26 RGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp TTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 57889999999999998654 59999999999999986
No 45
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=47.48 E-value=22 Score=37.10 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 001299 647 KEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLf 667 (1105)
.+.|.++||||+|||+-|.+.
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 578999999999999988654
No 46
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=47.30 E-value=4.7 Score=35.05 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=32.4
Q ss_pred HHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHH
Q 001299 592 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 666 (1105)
Q Consensus 592 EaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILL 666 (1105)
-+|-.++.++|..+ -|....+|+.|.+. + .+ .+ .++|.+++|||+++++-+.-
T Consensus 19 idiN~a~~~~L~~i---pGIG~~~A~~Il~~-------r-~~---------~s--~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 19 VSLNEASLEELMAL---PGIGPVLARRIVEG-------R-PY---------AR--VEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp EETTTCCHHHHTTS---TTCCHHHHHHHHHT-------C-CC---------SS--GGGGGGSTTCCHHHHHHHGG
T ss_pred cChhhCCHHHHHhC---CCCCHHHHHHHHHH-------c-cc---------CC--HHHHHhCCCCCHHHHHHHHH
Confidence 34556677766442 35555555554442 1 11 11 45789999999999988753
No 47
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=46.88 E-value=21 Score=32.66 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 592 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 592 EaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
-+|-.++.++|.. |. |+....|+.|.+.. +..|.+ .+ .+.|..++|||+++|+.+...
T Consensus 32 i~iN~a~~~~L~~-ip--GIG~~~A~~Il~~r----~~~g~f---------~s--~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 32 DLLNEGSARDLRS-LQ--RIGPKKAQLIVGWR----ELHGPF---------SQ--VEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHSCHHHHHH-ST--TCCHHHHHHHHHHH----HHHCCC---------SS--GGGGGGSTTCCHHHHHHHHHH
T ss_pred eehhhCCHHHHHH-CC--CCCHHHHHHHHHHH----HhcCCc---------CC--HHHHHhCCCCCHHHHHHHHHC
Confidence 4567777777643 34 44455666665542 123443 11 345899999999999988654
No 48
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=46.05 E-value=17 Score=44.25 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCCeeeecchHHHHHHHHh
Q 001299 623 LNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRL 687 (1105)
Q Consensus 623 A~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgrpvfPVDThV~RIl~RL 687 (1105)
|+.|.+.||. ++.|...+ .++|.+++|||+++|+.|..|.- +-+.+.++.+|
T Consensus 520 Ak~La~~Fgs--l~~l~~As----~eeL~~I~GIG~~~A~sI~~ff~-------~~~~~~~i~~L 571 (667)
T 1dgs_A 520 ARNLARRFGT--MDRLLEAS----LEELIEVEEVGELTARAILETLK-------DPAFRDLVRRL 571 (667)
T ss_dssp HHHHHHTTSB--HHHHTTCC----HHHHHTSTTCCHHHHHHHHHHHH-------CHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHHhccCcCHHHHHHHHHHHh-------hHHHHHHHHHH
Confidence 3445555654 56665544 45889999999999999987732 23445555554
No 49
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=45.74 E-value=15 Score=33.52 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=19.8
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 644 DKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 644 deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
..+...|..|||||+|.+..+|..
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHH
Confidence 356789999999999998877654
No 50
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=45.67 E-value=12 Score=43.48 Aligned_cols=72 Identities=29% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHH------------HHHHHHHhCCCChhhhhCCCc-------------
Q 001299 589 VDWEAVRCADESEIADAIKERGQQNIIAGRIKEF------------LNRLVELHGSIDLEWLRNVPP------------- 643 (1105)
Q Consensus 589 pTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~l------------A~~Ive~~GglDLE~Lr~vP~------------- 643 (1105)
-+..++..++.++| |.+||+..+...|+.+ |..+.++||.+.- --+.+|.
T Consensus 539 gs~savr~~pv~el----relg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~-~~~~~~~~~l~~~g~~~~~~ 613 (685)
T 4gfj_A 539 GSASAVRRLPVEEL----RELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKE-IGRRLSYDDLLELGATPKAA 613 (685)
T ss_dssp SCHHHHHHSCHHHH----HTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTG-GGGSCGGGCCSSSCCGGGC-
T ss_pred ccHHHHHhccHHHH----HHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHH-HhhcCCHHHHhccCCCHHHH
Confidence 36789999999986 8899999998888754 3445556654210 0011121
Q ss_pred ----hHHHHHHhcCCCCcHHHHHHHH
Q 001299 644 ----DKVKEYLLDIEGLGLKSVECVR 665 (1105)
Q Consensus 644 ----deaReeLLsLpGIG~KTAd~IL 665 (1105)
+.+.+.|+.++||||+.|+-++
T Consensus 614 ~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 614 AEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp --------------------------
T ss_pred HHhcChhHHHhhcccCCCHHHHHHHH
Confidence 1246788888888888887664
No 51
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=45.22 E-value=11 Score=32.20 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.7
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q 001299 648 EYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 648 eeLLsLpGIG~KTAd~ILLf 667 (1105)
..|..|||||++.+..+|..
T Consensus 4 s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHH
Confidence 57899999999998777654
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=44.11 E-value=12 Score=38.67 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 001299 646 VKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 646 aReeLLsLpGIG~KTAd~ILLf 667 (1105)
+...|.+++|||+|+|..+|..
T Consensus 70 ~f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 70 LFELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHh
Confidence 3457889999999999998765
No 53
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=39.38 E-value=16 Score=38.19 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.9
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 001299 647 KEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLf 667 (1105)
...|.+++|||+|+|..+|..
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~ 92 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSG 92 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHhh
Confidence 457889999999999998764
No 54
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=38.70 E-value=18 Score=33.12 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.6
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 001299 647 KEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLf 667 (1105)
...|.+|||||+++|..|+-+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457999999999999999876
No 55
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=37.67 E-value=34 Score=38.09 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCC-ChhhhhCCCchHHHHHHhcCCCCcHHHHHHH
Q 001299 610 GQQNIIAGRIKEFLNRLVELHGSI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECV 664 (1105)
Q Consensus 610 Gf~n~KAk~Ik~lA~~Ive~~Ggl-DLE~Lr~vP~deaReeLLsLpGIG~KTAd~I 664 (1105)
|.....|+.|.++.. .|.+ -|+.|+. ...+.+.|++|+|||+|||..+
T Consensus 64 GIG~~~A~kI~E~l~-----tG~~~~le~l~~--~~p~l~ll~~v~GiG~k~a~~l 112 (335)
T 2bcq_A 64 GIGKRMAEKIIEILE-----SGHLRKLDHISE--SVPVLELFSNIWGAGTKTAQMW 112 (335)
T ss_dssp TCCHHHHHHHHHHHH-----SSSCGGGGGCCT--THHHHHHHHTSTTCCHHHHHHH
T ss_pred CccHHHHHHHHHHHH-----cCCchHHHHHhh--hhHHHHHHhcCCCcCHHHHHHH
Confidence 444667777766643 3543 2344421 2235666679999999999876
No 56
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=37.62 E-value=20 Score=31.97 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.0
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhcC
Q 001299 646 VKEYLLDIEGLGLKSVECVRLLSLQ 670 (1105)
Q Consensus 646 aReeLLsLpGIG~KTAd~ILLfalg 670 (1105)
....|..|||||+++|..++.. ||
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~-fg 40 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT-FG 40 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH-TC
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CC
Confidence 3567889999999999888754 44
No 57
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=36.30 E-value=81 Score=28.85 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHH
Q 001299 615 IAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 665 (1105)
Q Consensus 615 KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~IL 665 (1105)
++.....++..|.. |+. .+.. -+++..|+|||+++|+.|-
T Consensus 36 ~~~~Y~KA~~sLk~-~P~-------~i~s---~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPL-------PLRS---GKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp THHHHHHHHHHHHH-CCS-------CCCS---HHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCC-------CCCC---HHHHHHhhcccHHHHHHHH
Confidence 45555666666655 442 1222 3578999999999998773
No 58
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=35.93 E-value=52 Score=38.39 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=48.8
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHH---HHhCCCChhhhhCCCc--hHH-------HHHHhcCC
Q 001299 587 DSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV---ELHGSIDLEWLRNVPP--DKV-------KEYLLDIE 654 (1105)
Q Consensus 587 ~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Iv---e~~GglDLE~Lr~vP~--dea-------ReeLLsLp 654 (1105)
..++|++|..|=+-.|..+-..-|...--|.++...+.... ..-.......|+.+|. ++. ...|.+|+
T Consensus 395 R~IhPNAIRGAveiqLASLAvkfG~g~eTAe~L~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIa 474 (685)
T 4gfj_A 395 GRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIR 474 (685)
T ss_dssp TSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTST
T ss_pred CCCCHHHHhhhHhhhhhhhhhhcCCchHHHHHHHHHhcchhhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccC
Confidence 45677777776555555555555666656666655554411 1001233445666665 322 25788999
Q ss_pred CCcHHHHHHHHHH
Q 001299 655 GLGLKSVECVRLL 667 (1105)
Q Consensus 655 GIG~KTAd~ILLf 667 (1105)
|||+.+|.-+|-.
T Consensus 475 GIGp~tAeRLLEk 487 (685)
T 4gfj_A 475 GIDRERAERLLKK 487 (685)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988744
No 59
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=35.23 E-value=21 Score=30.15 Aligned_cols=25 Identities=0% Similarity=-0.073 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhcC
Q 001299 645 KVKEYLLDIEGLGLKSVECVRLLSLQ 670 (1105)
Q Consensus 645 eaReeLLsLpGIG~KTAd~ILLfalg 670 (1105)
.....|..+||||+++|..++-. |+
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~-fg 35 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKH-FG 35 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH-HC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH-cC
Confidence 34567889999999999888763 44
No 60
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=35.21 E-value=31 Score=39.40 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHH
Q 001299 622 FLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 665 (1105)
Q Consensus 622 lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~IL 665 (1105)
+++.++++||. |+.+...+ .++|.++.|||.+.|..|.
T Consensus 327 iae~Lv~~FGs--Lq~Il~AS----~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKT--LDQISKAS----VEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCS--HHHHTTCC----HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCC--HHHHHhCC----HHHHHhccCccHHHHHHHH
Confidence 57888999986 67676554 4589999999999998774
No 61
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=34.38 E-value=24 Score=31.76 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.8
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhcC
Q 001299 646 VKEYLLDIEGLGLKSVECVRLLSLQ 670 (1105)
Q Consensus 646 aReeLLsLpGIG~KTAd~ILLfalg 670 (1105)
....|..|||||+++|..++.. ||
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~-fg 53 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTT-FG 53 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HS
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CC
Confidence 3567889999999999887654 44
No 62
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=33.39 E-value=18 Score=38.19 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHh
Q 001299 647 KEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLfa 668 (1105)
.+.|..|||||+++|..|+-+-
T Consensus 131 ~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 131 MHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp SBGGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHHH
Confidence 4578999999999999998773
No 63
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=30.98 E-value=10 Score=45.66 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Q 001299 598 DESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667 (1105)
Q Consensus 598 d~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLf 667 (1105)
....|..+|-.+|....=. ..++.|.+.||. ++.|...+ .++|.+++|||+++|..|..|
T Consensus 521 k~~~l~r~L~aLGIp~VG~----~~ak~La~~Fgs--le~L~~As----~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 521 KAAPLWRVLVALSIRHVGP----TAARALATEFGS--LDAIAAAS----TDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCHHHHHHHcCCCCCCH----HHHHHHHHHcCC--HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 3344445555555433111 113334455554 45555443 458999999999999999766
No 64
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=29.12 E-value=91 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=23.0
Q ss_pred CHHHHHcCCHHHHHHHHHhcCChHHH-HHHHHHHH
Q 001299 590 DWEAVRCADESEIADAIKERGQQNII-AGRIKEFL 623 (1105)
Q Consensus 590 TpEaLA~Ad~EELeelIR~lGf~n~K-Ak~Ik~lA 623 (1105)
++++|..|+.+||.++ +| ..+ |+.|.++.
T Consensus 26 s~~~i~~As~eeL~~v---ig--~~~~A~~I~~~l 55 (63)
T 2a1j_A 26 NIAELAALSQDELTSI---LG--NAANAKQLYDFI 55 (63)
T ss_dssp SHHHHHTCCHHHHHHH---HS--CHHHHHHHHHHH
T ss_pred CHHHHHHCCHHHHHHH---cC--chHHHHHHHHHH
Confidence 7899999999999888 55 335 88887654
No 65
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=29.11 E-value=18 Score=33.81 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=17.6
Q ss_pred HHHhcCCCCcHHHHHHHHH
Q 001299 648 EYLLDIEGLGLKSVECVRL 666 (1105)
Q Consensus 648 eeLLsLpGIG~KTAd~ILL 666 (1105)
++|..|||||+++|..|..
T Consensus 26 ~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHH
Confidence 5899999999999999987
No 66
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=29.08 E-value=16 Score=31.96 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcC
Q 001299 647 KEYLLDIEGLGLKSVECVRLLSLQ 670 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLfalg 670 (1105)
...|..|||||+++|..++-. |+
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cC
Confidence 446889999999999888754 44
No 67
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=27.87 E-value=22 Score=35.37 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=17.3
Q ss_pred HHHHhcCCCCcHHHHHHHH
Q 001299 647 KEYLLDIEGLGLKSVECVR 665 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~IL 665 (1105)
.++|.+|||||++.|..|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 4689999999999999998
No 68
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=27.42 E-value=54 Score=38.72 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHH
Q 001299 591 WEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRL 666 (1105)
Q Consensus 591 pEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILL 666 (1105)
.+.+.....+.+..+++--|... ..|..+....|-.+++.|. ..-....|.++||||+|||+-|++
T Consensus 81 ~~~~~~~~~~~~~~l~~v~GvGp-------k~A~~~~~~lg~~~~~~l~---~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 81 HEELSRKVPRGVLEVMEVPGVGP-------KTARLLYEGLGIDSLEKLK---AALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHHSCHHHHHHHTSTTTCH-------HHHHHHHHTSCCCSHHHHH---HHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHhcCCCcCH-------HHHHHHHHhcCCCCHHHHH---HHHHcCCcccCCCCCccHHHHHHH
No 69
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=25.18 E-value=1.4e+02 Score=26.37 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=35.1
Q ss_pred CCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 001299 586 MDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVEL 629 (1105)
Q Consensus 586 ~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~ 629 (1105)
.||-|.+.|+.++.++|. .--||...|+.-|+.-|+.++..
T Consensus 25 ~Gf~tve~vA~~~~~eL~---~I~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 25 EGFSTLEELAYVPMKELL---EIEGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp TTCCCHHHHHHSCHHHHT---TSTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCcCcHHHHHcCCHHHHh---hccCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999999973 34799999999999999887653
No 70
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.10 E-value=2.9e+02 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=35.4
Q ss_pred CHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhc
Q 001299 590 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL 669 (1105)
Q Consensus 590 TpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfal 669 (1105)
+...|+..+.++|+.......++. - +-++.++ .. ..+|++-.|||+|||+-+| .+|
T Consensus 376 siagilatdleeiermyeegrlse-e------ayraave--------------iq--laeltkkegvgrktaerll-raf 431 (519)
T 2csb_A 376 SIAGILATDLEEIERMYEEGRLSE-E------AYRAAVE--------------IQ--LAELTKKEGVGRKTAERLL-RAF 431 (519)
T ss_dssp SHHHHHTSCHHHHHHHHHHTSSCH-H------HHHHHHH--------------HH--HHHHHTSTTCCHHHHHHHH-HHH
T ss_pred HHHHHHhccHHHHHHHHHcccccH-H------HHHHHHH--------------HH--HHHHhhhcccchhHHHHHH-HHh
Confidence 456667777777766655555544 1 1111111 01 4578888999999998764 466
Q ss_pred CCe
Q 001299 670 QHI 672 (1105)
Q Consensus 670 grp 672 (1105)
|.|
T Consensus 432 gnp 434 (519)
T 2csb_A 432 GNP 434 (519)
T ss_dssp SSH
T ss_pred CCH
Confidence 654
No 71
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=22.04 E-value=45 Score=31.98 Aligned_cols=47 Identities=26% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHhhhhccCCCCCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 001299 574 IYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVE 628 (1105)
Q Consensus 574 a~~rL~er~~~~~~fpTpEaLA~Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive 628 (1105)
...+|.+ .+|-|.++|+.++.++|. +-.|++..||..|++.|+.++.
T Consensus 37 ~i~kL~e-----AG~~Tve~va~a~~~eL~---~i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 37 DVKKLEE-----AGFHTVEAVAYAPKKELI---NIKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp HHHHHHT-----TCCSSGGGBTSSBHHHHH---TTTTCSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHH-----cCcCcHHHHHhCCHHHHH---HccCCCHHHHHHHHHHHHHHcc
Confidence 4456653 678899999999999874 4578889999999999987753
No 72
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=21.37 E-value=89 Score=38.77 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHhcCC-eeee
Q 001299 597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQH-IAFP 675 (1105)
Q Consensus 597 Ad~EELeelIR~lGf~n~KAk~Ik~lA~~Ive~~GglDLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfalgr-pvfP 675 (1105)
|+.++|. +-.|+...+|+.|.+.- +.+|.| .. ++.|+.++|||+++.+-+.-|..=. -..|
T Consensus 505 As~~~L~---~v~GiG~~~A~~Iv~yR----~~~G~f---------~s--r~~L~~V~giG~k~~ekl~~FL~i~G~~~p 566 (785)
T 3bzc_A 505 ASAALLA---RISGLNSTLAQNIVAHR----DANGAF---------RT--RDELKKVSRLGEKTFEQAAGFLRVMNGDNP 566 (785)
T ss_dssp CCHHHHH---TSTTCCHHHHHHHHHHH----HHHCCC---------SS--GGGGGGSTTCCHHHHHHHGGGEECTTSSCG
T ss_pred CCHHHHh---hcCCCCHHHHHHHHHHH----HhcCCC---------CC--HHHHHhcCCCCHHHHHHhhheEEECCcccc
Confidence 4555553 33688888998887752 345764 22 5689999999999988876653211 1234
Q ss_pred cch---------HHHHHHHHhCC
Q 001299 676 VDV---------NVGRIAVRLGW 689 (1105)
Q Consensus 676 VDT---------hV~RIl~RLG~ 689 (1105)
.|. .+.+++..+|.
T Consensus 567 LD~t~VHPEsY~~a~kil~~~g~ 589 (785)
T 3bzc_A 567 LDASAVHPETYPLVQRIAADTER 589 (785)
T ss_dssp GGGSSCCGGGHHHHHHHHHHHTC
T ss_pred cccCcCCHHHHHHHHHHHHHcCC
Confidence 442 35577777754
No 73
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=20.93 E-value=21 Score=38.32 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcC
Q 001299 647 KEYLLDIEGLGLKSVECVRLLSLQ 670 (1105)
Q Consensus 647 ReeLLsLpGIG~KTAd~ILLfalg 670 (1105)
...|+.|+|||+++|..++-.+|+
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~ 37 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFE 37 (241)
T ss_dssp ------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCC
Confidence 457888999999999888766444
No 74
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=20.09 E-value=64 Score=31.12 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHh
Q 001299 645 KVKEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 645 eaReeLLsLpGIG~KTAd~ILLfa 668 (1105)
.+.-.|+.|+|||+.+|..|+.-+
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHT
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHc
Confidence 456689999999999998887553
No 75
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=20.03 E-value=1.1e+02 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.5
Q ss_pred ChhhhhCCCchHHHHHHhcCCCCcHHHHHHHHHHh
Q 001299 634 DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLS 668 (1105)
Q Consensus 634 DLE~Lr~vP~deaReeLLsLpGIG~KTAd~ILLfa 668 (1105)
+.+.+...+ ++.|..++|||.-.|+-|+..+
T Consensus 48 Tve~va~a~----~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 48 TVEAVAYAP----KKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp SGGGBTSSB----HHHHHTTTTCSTTHHHHHHHHH
T ss_pred cHHHHHhCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 566666654 4589999999999999887665
Done!