RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 001299
(1105 letters)
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair].
Length = 211
Score = 98.0 bits (245), Expect = 6e-23
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 590 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 649
E + ADE E+ + IK G A IKE L+E G PD +E
Sbjct: 60 TPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGG--------EVPDTREE- 110
Query: 650 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPV 709
LL + G+G K+ V + A VD +V R++ RLG VP + P
Sbjct: 111 LLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVP-------------GKTP- 156
Query: 710 MDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 761
++++ L + ++ +LH+ +I G+ CK R P C CPL C
Sbjct: 157 -EEVEEALMKLI---PKELWTDLHHWLILHGRYICKARKPRCEECPLADLCP 204
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III. includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase
DNA glycosidases (Alka-family) and other DNA
glycosidases.
Length = 149
Score = 70.8 bits (174), Expect = 3e-14
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 26/151 (17%)
Query: 592 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 651
E + ADE E+ + I+ G A + E LVE +G PD +E LL
Sbjct: 25 EDLAAADEEELEELIRGLGFYRRKARYLIELARILVEEYGG--------EVPDDREE-LL 75
Query: 652 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 711
+ G+G K+ V +L PVD +V RIA RLG V + P ++ L K P
Sbjct: 76 KLPGVGRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLP--- 132
Query: 712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKI 742
++ EL+ +I FG+
Sbjct: 133 --------------EEDWRELNLLLIDFGRT 149
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase
DNA glycosidases (Alka-family) and other DNA
glycosidases.
Length = 158
Score = 68.8 bits (169), Expect = 2e-13
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 590 DWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEY 649
EA+ ADE E+ + I+ G + A +KE +VE G + L+ PD +E
Sbjct: 32 TPEALAAADEEELRELIRSLGYRRK-AKYLKELARAIVEGFGGLVLDD-----PDAREE- 84
Query: 650 LLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLP 696
LL + G+G K+ V L +L AFPVD +V R+ RLG +P + P
Sbjct: 85 LLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKKTP 131
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair
protein. This family contains a diverse range of
structurally related DNA repair proteins. The
superfamily is called the HhH-GPD family after its
hallmark Helix-hairpin-helix and Gly/Pro rich loop
followed by a conserved aspartate. This includes
endonuclease III, EC:4.2.99.18 and MutY an A/G-specific
adenine glycosylase, both have a C terminal 4Fe-4S
cluster. The family also includes 8-oxoguanine DNA
glycosylases. The methyl-CPG binding protein MBD4 also
contains a related domain that is a thymine DNA
glycosylase. The family also includes
DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other
members of the AlkA family.
Length = 144
Score = 67.4 bits (165), Expect = 4e-13
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 584 DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPP 643
++ E + ADE E+ + IK G A IKE LVE + +
Sbjct: 23 ERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKELARILVEGYLGLVPL------D 76
Query: 644 DKVKEYLLDIEGLGLKSVECVRLLSLQH--IAFPVDVNVGRIAVRLGWVPLQPLPGDLHI 701
+ E LL + G+G + E V L +L + VD +V R+A RLG + +P ++
Sbjct: 77 LEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVAKRLGLIDTKPPKKEVER 136
Query: 702 HLLKEYP 708
L + +P
Sbjct: 137 ELEELWP 143
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease
III [DNA replication, recombination, and repair].
Length = 215
Score = 62.8 bits (153), Expect = 7e-11
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 585 KMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPD 644
++ + + DE E+A+ I+ G N A R+K L + +++ + +
Sbjct: 57 NEGILNLKKILKLDEEELAELIRPSGFYNQKAKRLKALSKNLAKFFINLE-----SFKSE 111
Query: 645 KVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLL 704
++E LL I+G+G ++ + + L +L F VD R+ RLG +
Sbjct: 112 VLREELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLLSRLGGI------------EE 159
Query: 705 KEYPVMDKIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKH 762
K+Y + ++ P + + E H ++ K FCKK+ P C CPL+ +CK
Sbjct: 160 KKYDEIKELFEENLPE----NLRLYQEFHALIVEHAKHFCKKK-PLCEKCPLKEKCKK 212
>gnl|CDD|130155 TIGR01083, nth, endonuclease III. This equivalog model identifes
nth members of the pfam00730 superfamily (HhH-GPD:
Helix-hairpin-helix and Gly/Pro rich loop followed by a
conserved aspartate). The major members of the
superfamily are nth and mutY [DNA metabolism, DNA
replication, recombination, and repair].
Length = 191
Score = 49.7 bits (119), Expect = 1e-06
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 656
A E+ + IK G A I LVE +G VP D+ E L+ + G+
Sbjct: 64 AGLEELEEYIKSIGLYRNKAKNIIALCRILVERYGG-------EVPEDR--EELVKLPGV 114
Query: 657 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMY 716
G K+ V ++ A VD +V R++ RLG P DK++
Sbjct: 115 GRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSK-GKDP--------------DKVEEE 159
Query: 717 LWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNC 751
L L + ++ +LH+ +I G+ CK R P C
Sbjct: 160 L---LKLIPREFWTKLHHWLILHGRYTCKARKPLC 191
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and
repair].
Length = 285
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 568 WDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLV 627
W L +Y E H E + ADE + + A I
Sbjct: 127 WARLVSLYGNALEIYHSFPTP---EQLAAADEEALRRCGLSGRK----AEYIISLARAAA 179
Query: 628 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVR 686
E G +DL L+ + ++ E L ++G+G + E L L FP D R A++
Sbjct: 180 E--GELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIK 237
Query: 687 LGWVPLQPLPGDLHIHLLKEY-PVMDKIQMYLW 718
+ L + + P +YLW
Sbjct: 238 KLYRLPTRPTEKEVRELAERWGPYRSYAALYLW 270
>gnl|CDD|197771 smart00525, FES, iron-sulpphur binding domain in DNA-(apurinic or
apyrimidinic site) lyase (subfamily of ENDO3).
Length = 21
Score = 36.4 bits (85), Expect = 0.002
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 743 FCKKRSPNCGACPLRGECKHF 763
C R P C CPL+ C +
Sbjct: 1 ICTARKPRCDECPLKDLCPAY 21
>gnl|CDD|211589 TIGR00588, ogg, 8-oxoguanine DNA-glycosylase (ogg). All proteins
in this family for which functions are known are
8-oxo-guanaine DNA glycosylases that function in base
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). This family is distantly realted
to the Nth-MutY superfamily [DNA metabolism, DNA
replication, recombination, and repair].
Length = 310
Score = 41.4 bits (97), Expect = 0.002
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 628 ELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVR 686
E G L+ +R + +E L ++ G+G K +C+ L+ L A PVDV+V RIA R
Sbjct: 200 EQGGRAWLQQIRGASYEDAREALCELPGVGPKVADCICLMGLDKPQAVPVDVHVWRIANR 259
>gnl|CDD|204516 pfam10576, EndIII_4Fe-2S, Iron-sulfur binding domain of
endonuclease III. Escherichia coli endonuclease III (EC
4.2.99.18) is a DNA repair enzyme that acts both as a
DNA N-glycosylase, removing oxidized pyrimidines from
DNA, and as an apurinic/apyrimidinic (AP) endonuclease,
introducing a single-strand nick at the site from which
the damaged base was removed. Endonuclease III is an
iron-sulfur protein that binds a single 4Fe-4S cluster.
The 4Fe-4S cluster does not seem to be important for
catalytic activity, but is probably involved in the
proper positioning of the enzyme along the DNA strand.
The 4Fe-4S cluster is bound by four cysteines which are
all located in a 17 amino acid region at the C-terminal
end of endonuclease III. A similar region is also
present in the central section of mutY and in the
C-terminus of ORF-10 and of the Micro-coccus UV
endonuclease.
Length = 17
Score = 34.7 bits (81), Expect = 0.007
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 744 CKKRSPNCGACPLRGEC 760
C R P C CPL C
Sbjct: 1 CTARKPKCEECPLADLC 17
>gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication,
recombination, and repair].
Length = 342
Score = 39.6 bits (93), Expect = 0.007
Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 676 VDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRL-CYLDQKTLYELHY 734
+D NV R+ RL I P K LW L
Sbjct: 141 LDGNVKRVLSRL-----------FAISGDIGKPKTKKE---LWELAEQLLTPDRRPGDFN 186
Query: 735 Q-MITFGKIFCKKRSPNCGACPLRGEC 760
Q M+ G C + P C CPLR C
Sbjct: 187 QAMMDLGATICTAKKPKCSLCPLRDNC 213
>gnl|CDD|182661 PRK10702, PRK10702, endonuclease III; Provisional.
Length = 211
Score = 34.6 bits (79), Expect = 0.16
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 27/156 (17%)
Query: 606 IKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVR 665
IK G N A + + L+E H VP D+ L + G+G K+ V
Sbjct: 76 IKTIGLYNSKAENVIKTCRILLEQHNG-------EVPEDR--AALEALPGVGRKTANVVL 126
Query: 666 LLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 725
+ VD ++ R+ R + P + + + LLK P K+
Sbjct: 127 NTAFGWPTIAVDTHIFRVCNRTQFAPGKNVE-QVEEKLLKVVPAEFKV------------ 173
Query: 726 QKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECK 761
+ H+ +I G+ C R P CG+C + C+
Sbjct: 174 -----DCHHWLILHGRYTCIARKPRCGSCIIEDLCE 204
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 31.9 bits (73), Expect = 1.7
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 11/114 (9%)
Query: 313 KALQENGDIKVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQF 372
KA QE +I M D Q+ S+ S + Q P S ++T A T
Sbjct: 137 KAQQE--EITTMAD----QS---SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPT 187
Query: 373 SHTGNLKKNSVNQLFPTVNSKADVASPSQNHITQSSVTQFWPTGNSTADVASPS 426
+ + + V +PSQ ++ ++ P+
Sbjct: 188 NSQTP--AVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPT 239
>gnl|CDD|234230 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106
family. Members of this uncharacterized protein family
are found broadly but sporadically among bacteria. The
N-terminal region is homologous to the Cas4 protein of
CRISPR systems, although this protein family shows no
signs of association with CRISPR repeats.
Length = 457
Score = 31.9 bits (73), Expect = 2.2
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 578 GEERSH----DKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSI 633
EE + + S + E+E + + I+E L R V++H
Sbjct: 327 TEELAWQQFLQLLQSYPDAPIYHYGETEKDSLRRLAKRYGTPEAEIEELLKRFVDIH--- 383
Query: 634 DLEWLRNVPPDKVKEYLLDIEGLGLKSVE 662
+R ++L IE LKS+
Sbjct: 384 --TIVRR-------SWILPIESYSLKSIA 403
>gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase. This equivalog
model identifies mutY members of the pfam00730
superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro
rich loop followed by a conserved aspartate). The major
members of the superfamily are nth and mutY [DNA
metabolism, DNA replication, recombination, and repair].
Length = 275
Score = 30.8 bits (70), Expect = 3.4
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 26/136 (19%)
Query: 627 VELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSL-QHIAFPVDVNVGRIAV 685
VE G P D E L + G+G + + +L + +D NV R+
Sbjct: 93 VEEFGG-------EFPQDF--EDLAALPGVGRYTAGAILSFALNKPYPI-LDGNVKRVLS 142
Query: 686 RLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLYELHYQ-MITFGKIFC 744
RL ++ +P K++ LW L K E Q ++ G + C
Sbjct: 143 RL--------------FAVEGWPGKKKVENRLWTLAESLLPKADPEAFNQALMDLGAMIC 188
Query: 745 KKRSPNCGACPLRGEC 760
++ P C CPL+ C
Sbjct: 189 TRKKPKCDLCPLQDFC 204
>gnl|CDD|200535 cd11274, Sema_plexin_A4, The Sema domain, a protein interacting
module, of Plexin A4. Plexin A4 forms a receptor
complex with neuropilins (NRPs) and transduces signals
for class 3 semaphorins in the nervous system. It
regulates facial nerve development by functioning as a
receptor for Sema3A/NRP1. Both plexins A3 and A4 are
essential for normal sympathetic development. They
function both cooperatively, to regulate the migration
of sympathetic neurons, and differentially, to guide
sympathetic axons. Plexin A4 is also expressed in
lymphoid tissues and functions in the immune system. It
negatively regulates T lymphocyte responses. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a ligand-recognition and -binding
module.
Length = 473
Score = 31.1 bits (70), Expect = 3.5
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 564 VQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRIKEFL 623
V D D+L ++S G++R KM S+D A+ EI D IK+R L
Sbjct: 290 VGPDDDILFTVFSKGQKR---KMKSLDESALCIFVLKEINDRIKDR-------------L 333
Query: 624 NRLVELHGSIDLEWLR 639
G++DL WL+
Sbjct: 334 QSCYRGEGTLDLAWLK 349
>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 143
Score = 29.8 bits (67), Expect = 3.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 25/79 (31%)
Query: 880 VMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAH-----ELLRGFDRR--- 931
V+LQ S + LT +R + LR +V+V P H LL R
Sbjct: 6 VLLQSSDQKLLLT-----------RRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNE 54
Query: 932 ------DPDDPSPYLLAIW 944
DP D S +L +W
Sbjct: 55 ETGLTLDPIDKSWQVLGLW 73
>gnl|CDD|129611 TIGR00520, asnASE_II, L-asparaginase, type II. Two related
families of asparaginase (L-asparagine amidohydrolase,
EC 3.5.1.1) are designated type I and type II according
to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
periplasmic enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type II of E. coli. Both the cytoplasmic and the cell
wall asparaginases of Saccharomyces cerevisiae belong to
this set. Members of this set from Acinetobacter
glutaminasificans and Pseudomonas fluorescens are
described as having both glutaminase and asparaginase
activitities. All members are homotetrameric [Energy
metabolism, Amino acids and amines].
Length = 349
Score = 30.5 bits (69), Expect = 5.7
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 88 FKDLTIRDG------GSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALV 132
F DLT++ G+ P ADGP N++NAV S+ G LV
Sbjct: 124 FLDLTVKSDKPVVIVGAMRPSTSVSADGPMNLYNAVSVAANPKSAGRGVLV 174
>gnl|CDD|115650 pfam07010, Endomucin, Endomucin. This family consists of several
mammalian endomucin proteins. Endomucin is an early
endothelial-specific antigen that is also expressed on
putative hematopoietic progenitor cells.
Length = 259
Score = 29.7 bits (66), Expect = 8.5
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 348 PTGNSKADVASSTKTSNAESFITQ----FSHTGNLKKNSVNQLFPTV------NSKADVA 397
P G + +++ ++ S A S T + T ++KN + TV N+ + +
Sbjct: 61 PKGTTTSELLKTSLMSTATSLTTPKHELKTTTTGVRKNESSTSKVTVTNVTLSNAVSTLQ 120
Query: 398 SPSQNHITQSSV-TQFWPTGNSTADVASPSKTCIKESSIAASTEIPQLENTALLQDKVDG 456
S QSS+ T + ASP KT + +AS E T+ QD DG
Sbjct: 121 SSQNKTENQSSIRTTEISPTSVLQPDASPKKT----GTTSASLTTA--ETTSQSQDTEDG 174
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 29.7 bits (67), Expect = 9.5
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 17/59 (28%)
Query: 884 DSSALVALTAEAASVPTRKL---------------KRCA-HLRTEHHVY-VLPDAHELL 925
DSSA+VAL A + P ++ A T H V V PD L+
Sbjct: 270 DSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDDFSLV 328
>gnl|CDD|199205 cd00411, L-asparaginase_like, Bacterial L-asparaginases and related
enzymes. Asparaginases (amidohydrolases, E.C. 3.5.1.1)
are dimeric or tetrameric enzymes that catalyze the
hydrolysis of asparagine to aspartic acid and ammonia.
In bacteria, there are two classes of amidohydrolases,
one highly specific for asparagine and localized to the
periplasm (type II L-asparaginase), and a second
(asparaginase- glutaminase) present in the cytosol (type
I L-asparaginase) that hydrolyzes both asparagine and
glutamine with similar specificities and has a lower
affinity for its substrate. Bacterial L-asparaginases
(type II) are potent antileukemic agents and have been
used in the treatment of acute lymphoblastic leukemia
(ALL). A conserved threonine residue is thought to
supply the nucleophile hydroxy-group that attacks the
amide bond. Many bacterial L-asparaginases have both
L-asparagine and L-glutamine hydrolysis activities, to a
different degree, and some of them are annotated as
asparaginase/glutaminase. This wider family also
includes a subunit of an archaeal Glu-tRNA
amidotransferase.
Length = 320
Score = 29.4 bits (66), Expect = 9.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 88 FKDLTIRDG------GSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALV 132
F LT+++ G+ P ADGP N++NAV + S G LV
Sbjct: 98 FLSLTLKNDKPVVLVGAMRPSTAMSADGPFNLYNAVRVAKDKDSRGRGVLV 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 54,731,910
Number of extensions: 5276158
Number of successful extensions: 4195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4177
Number of HSP's successfully gapped: 25
Length of query: 1105
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 998
Effective length of database: 6,191,724
Effective search space: 6179340552
Effective search space used: 6179340552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.3 bits)