RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 001299
         (1105 letters)



>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision
           repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori}
           SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
          Length = 218

 Score =  100 bits (250), Expect = 8e-24
 Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 16/189 (8%)

Query: 560 SDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAGRI 619
               V +  + L+  +    +      D ++ + +   + S++A+ ++  G  N  A R+
Sbjct: 44  KFEAVLKSLENLKNAFILEND------DEINLKKIAYIEFSKLAECVRPSGFYNQKAKRL 97

Query: 620 KEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPVDVN 679
            +    +++   S       N   +  +E+LLD +G+G +S + +   +       VD  
Sbjct: 98  IDLSGNILKDFQS-----FENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKY 152

Query: 680 VGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLDQKTLY-ELHYQMIT 738
                 +LG         +L     K     + +   L      +    LY   H +++ 
Sbjct: 153 SYLFLKKLGIEI--EDYDELQHFFEKGVQ--ENLNSALALYENTISLAQLYARFHGKIVE 208

Query: 739 FGKIFCKKR 747
           F K   + +
Sbjct: 209 FSKQKLELK 217



 Score = 30.5 bits (69), Expect = 2.5
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 219 VVGVYLTQNVSDNLSSSAYMSLAARFPLKSTNDHTPSD 256
           ++G  LTQN        +  +L   F L++ ++     
Sbjct: 34  LLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKK 71


>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster,
           iron-sulfur cluster, hydrolase/DNA complex; HET: PED;
           1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1
           PDB: 1orp_A* 1p59_A*
          Length = 226

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 592 EAVRCADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLL 651
                    E+   I+  G     A  I++    L++ +          VP D+  + L+
Sbjct: 66  HDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRDR--DELM 116

Query: 652 DIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYPVMD 711
            + G+G K+   V  ++    A  VD +V R++ RLG+        ++   L+K  P   
Sbjct: 117 KLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP--- 173

Query: 712 KIQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 763
                         ++     H++MI FG+  CK +SP C +CPL   C+  
Sbjct: 174 --------------KEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREG 211


>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
           8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
           glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
          Length = 207

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 591 WEAVRCADESEIADAIKERGQQ--NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKE 648
            + +  A+E EI + +K    +  N+ A  I     ++       +++ L +      +E
Sbjct: 59  GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKE-EIKPLADEDQQLARE 117

Query: 649 YLLDIEGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQPLPGDLHIHLLKEYP 708
            LL+I+G+G++                +D ++     R+G +    +           Y 
Sbjct: 118 RLLNIKGIGMQEASHFLRNVGYFDLAIIDRHIIDFMRRIGAIGETNVK----QLSKSLYI 173

Query: 709 VMDKIQMYLWPRLC 722
             + I   +   L 
Sbjct: 174 SFENILKSIASNLN 187


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 66.2 bits (161), Expect = 5e-11
 Identities = 101/607 (16%), Positives = 178/607 (29%), Gaps = 204/607 (33%)

Query: 125 SSEHGALVPH-------QIKEKRKKLKPEVVLDPGTLRMWNLIMNIDDGTTKDQTSNEDM 177
           S EH  LVP        Q++E+  K+ PE                  +G   D       
Sbjct: 15  SLEHVLLVPTASFFIASQLQEQFNKILPEP----------------TEGFAADDEPTTPA 58

Query: 178 EKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVVDSVVGVYLTQNVSDNLSSSAY 237
           E           G+   + +           +P K    D V+ + LT+  +  L  +  
Sbjct: 59  ELV---------GKFLGYVSS--------LVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101

Query: 238 MSLAARFPLKSTNDHTPSDENLRT-----TASLEPIGSNSTS--NGAVYDSE-------- 282
            +LAA+   ++      + E ++        +  P    S S    AV +          
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161

Query: 283 --GNM--YFVTEPEPDRCCELKDRDDAFDSRIQ------RKALQENGDIKVMTDAVPSQA 332
             GN   YF      +   EL+D    +   +        + L E     +  + V +Q 
Sbjct: 162 GQGNTDDYF------E---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212

Query: 333 FDTSSVQS-LDRTQLFPTGNSKADVASSTKTSNAESF----ITQFSH---TGNLKKNSVN 384
            +   +   L+     P    K  + S        S     + Q +H   T  L   +  
Sbjct: 213 LN---ILEWLENPSNTP---DKDYLLSI-----PISCPLIGVIQLAHYVVTAKLLGFTPG 261

Query: 385 QLFP-----TVNSKADVA------SPSQNHITQSSVTQ----FWPTGNSTADVASPSKTC 429
           +L       T +S+  V       + S      S        F+  G      A P+ T 
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-IG-VRCYEAYPN-TS 318

Query: 430 IKESSIAASTEI------PQLENTALLQDKVDGILFCDECLDGYTKPTRIDNGNQASTSG 483
           +  S +  S E       P L  + L Q++V                  ++  N      
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQ---------------DYVNKTNS----- 358

Query: 484 RNDLKSDFRSISSSDFNDP--FEISVLPSNRESFRTGMPQAHDATTTS---KKSPRGKGK 538
              L +  + +  S  N        V+        +G PQ+      +    K+P G  +
Sbjct: 359 --HLPAG-KQVEISLVNGAKNL---VV--------SGPPQSLYGLNLTLRKAKAPSGLDQ 404

Query: 539 SKEYKSDMKNDRTKK----TTP-----KKNSDNTVQQD-------W---DLLRRIYST-- 577
           S+   S+ K   + +     +P        + + + +D       +   D+   +Y T  
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464

Query: 578 GEE-RSHDKM-----------DSVDWEAVRCADESEIAD--------------AIKE-RG 610
           G + R                  V WE       + I D                K+  G
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524

Query: 611 QQNIIAG 617
            + I+AG
Sbjct: 525 VRVIVAG 531



 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 108/704 (15%), Positives = 185/704 (26%), Gaps = 290/704 (41%)

Query: 464  LDGY-TKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISVLPSNRESFRTGMPQ- 521
            +D Y T+P  + +G+         L+     + ++ F   F  S L   +E F   +P+ 
Sbjct: 1    MDAYSTRPLTLSHGS---------LEHVL-LVPTASF---FIASQL---QEQFNKILPEP 44

Query: 522  ----AHDATTTSK-----------KSPRGKGKSKEYKSDMK-------------ND-RTK 552
                A D   T+             S     K  ++   +              ND    
Sbjct: 45   TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104

Query: 553  KTTPKKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQ 612
                 + +D T+ +  +L++  Y T    +    D            S +  A+ E G  
Sbjct: 105  AAKLLQENDTTLVKTKELIK-NYITARIMAKRPFDK--------KSNSALFRAVGE-GNA 154

Query: 613  NIIA-----GRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLL 667
             ++A     G   ++   L +L+               V + L+      L   E +R  
Sbjct: 155  QLVAIFGGQGNTDDYFEELRDLY---------QTYHVLVGD-LIKFSAETLS--ELIRTT 202

Query: 668  SLQHIAFPVDVNVGRIAVRLGWV--PLQPLPGDLHIHLLKEYPVMDKIQMYLWPRLCYLD 725
                  F   +N+      L W+  P    P   +   L   P+         P +    
Sbjct: 203  LDAEKVFTQGLNI------LEWLENP-SNTPDKDY---LLSIPIS-------CPLIG--- 242

Query: 726  QKTLYEL-HYQMITFGKIFCKKRSPNCGACPLRGE-CKHFASAVASARFALPGPSEKGIV 783
               + +L HY       +  K      G  P  GE   +   A   +         +G+V
Sbjct: 243  ---VIQLAHYV------VTAK----LLGFTP--GELRSYLKGATGHS---------QGLV 278

Query: 784  TSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCSESPESE 843
            T                        A  ++E+                       S ES 
Sbjct: 279  T------------------------AVAIAETD----------------------SWESF 292

Query: 844  IDDDD------FSIGDIEEIPTLRLQEREFKENFPNFMEMNKVMLQDS--------SALV 889
                       F IG       +R  E      +PN   +   +L+DS        S ++
Sbjct: 293  FVSVRKAITVLFFIG-------VRCYEA-----YPN-TSLPPSILEDSLENNEGVPSPML 339

Query: 890  ALT-AEAASVPTRKLKRCAHLRTEHHVYV-L---PDAH------ELLRG----------- 927
            +++      V     K  +HL     V + L             + L G           
Sbjct: 340  SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399

Query: 928  ---------FDRRDPD-----DP------SPYL--------LAIWSPGES--PNSVGSPQ 957
                     F  R         P      S  L          +     S     +  P 
Sbjct: 400  SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459

Query: 958  YRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVN-EVF 1016
            Y  ++ D     S++     S+ ER         ++ C      R P       V  E  
Sbjct: 460  Y--DTFD----GSDLRVLSGSISER---------IVDCII----RLP-------VKWETT 493

Query: 1017 ADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQ 1060
               + +H                I+ FG    +    L  R   
Sbjct: 494  TQFKATH----------------ILDFGPGGASGLGVLTHRNKD 521



 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 24/94 (25%)

Query: 581  RSHDKMDSVDWEAVR--CADES--EIADAIKER-------------GQQNIIAGRIKEFL 623
            RS+  M +++   V    + E+   + + + +R              QQ + AG ++  L
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-L 1862

Query: 624  NRLVEL-----HGSIDLEWLR-NVPPDKVKEYLL 651
            + +  +        ID+  L+ ++  ++V+ +L 
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896



 Score = 41.2 bits (96), Expect = 0.002
 Identities = 42/232 (18%), Positives = 71/232 (30%), Gaps = 71/232 (30%)

Query: 787  FGNGIGQSPPLVV--NPIPVIRIEADPVSESGYQIN-NCEPIIEEPRSPGPQCSESPESE 843
            F +  G S   +V  NP+    +      E G +I  N   +I E    G   +E    E
Sbjct: 1653 FKDTYGFSILDIVINNPV---NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709

Query: 844  IDDDDFSI---GDIEEI-------PTLRLQE----REFKENFPNFMEMNKVMLQDS---- 885
            I++   S     +   +       P L L E     + K      +  +      S    
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG--LIPADATFAGHSLGEY 1767

Query: 886  SALVALTAEAASVPTRKLKRCAHLRTEHHVYVLP--DAHELL--RG-----FDRRDPDDP 936
            +AL +L A+                      V+      E++  RG        RD    
Sbjct: 1768 AALASL-AD----------------------VMSIESLVEVVFYRGMTMQVAVPRDELGR 1804

Query: 937  SPY-LLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIV 987
            S Y ++AI     +P  V +     + +  +     +      + E    IV
Sbjct: 1805 SNYGMIAI-----NPGRVAA---SFSQEALQYVVERVGKRTGWLVE----IV 1844



 Score = 39.6 bits (92), Expect = 0.008
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 60/216 (27%)

Query: 3   RLDQLRKQI------------------NGPSSQLQEQNRVIQRKSWNPKGLW-FTAKSRG 43
             +Q++  +                  NG       +N V+   S  P+ L+      R 
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGA------KNLVV---SGPPQSLYGLNLTLRK 395

Query: 44  SQKIIQVERNGLPTQKMPPRYS-RGLQVDM--EQQLMQSTTADIIRKFKDLTIRDGGSQL 100
           ++    ++++ +P  +   ++S R L V       L+   +  I +      +      +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455

Query: 101 --PLQCNKADGPSNVHNAVVPYQVGPSSEHGALVPHQIK------EKRKKLKPEVVLD-- 150
             P+     DG S++       +V   S    +V   I       E   + K   +LD  
Sbjct: 456 QIPVYDTF-DG-SDL-------RVLSGSISERIVD-CIIRLPVKWETTTQFKATHILDFG 505

Query: 151 PGTL-RMWNLIMNIDDGT--------TKDQTSNEDM 177
           PG    +  L     DGT        T D   ++D 
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541


>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia
           coli} SCOP: a.96.1.1
          Length = 211

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 35/171 (20%)

Query: 597 ADESEIADAIKERGQQNIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGL 656
                +   IK  G  N  A  I +    L+E H          VP D+    L  + G+
Sbjct: 67  LGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPEDR--AALEALPGV 117

Query: 657 GLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWV----PLQPLPGDLHIHLLKEYPVMDK 712
           G K+   V   +       VD ++ R+  R  +       Q            E  ++  
Sbjct: 118 GRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQ-----------VEEKLLKV 166

Query: 713 IQMYLWPRLCYLDQKTLYELHYQMITFGKIFCKKRSPNCGACPLRGECKHF 763
           +                   H+ +I  G+  C  R P CG+C +   C++ 
Sbjct: 167 VPAEFKVD-----------CHHWLILHGRYTCIARKPRCGSCIIEDLCEYK 206


>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG,
           glycosylase, cytosine, hydrolase,lyase/DNA complex; HET:
           8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A*
           3f10_A* 3f0z_A
          Length = 290

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 559 NSDNTVQQDWDLLRRIY-STGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIAG 617
           N    +++  + +        E +          + +    E +  +           A 
Sbjct: 128 NRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEEC-----TAGFRAK 182

Query: 618 RIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPV 676
            +K+ ++R+    G ++LE+++++  ++  E L    G+G +  +C+ L S+Q   AFPV
Sbjct: 183 YLKDTVDRIYN--GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV 240

Query: 677 DVNVGRIAVRLGWVP 691
           D  V +  + L   P
Sbjct: 241 DTWVKKAMMSLYVAP 255


>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex,
           separation-OF-function helix-hairpin-helix, DNA repair;
           HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A*
           1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A*
           1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A
           1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
          Length = 360

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 559 NSDNTVQQDWDLLRRIYSTGEERSHDKM--DSVDWEAVRCADESEIADAIKERGQQNIIA 616
           N+   +    + L + +     +  D         +A+   +       +    +    A
Sbjct: 165 NNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR----A 220

Query: 617 GRIKEFLNRLVELHGSI-DLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AF 674
             +      ++E  G +  L+ LR    ++  + L  + G+G    + + L++L    A 
Sbjct: 221 RYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAV 280

Query: 675 PVDVNVGRIAVRL-GWVPLQPLPGDLHIHLLKEYPVMDKI---------QMYLW 718
           PV+V++  IA R   W P             KE     +          Q  L+
Sbjct: 281 PVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLF 334


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 59.5 bits (143), Expect = 6e-09
 Identities = 81/527 (15%), Positives = 161/527 (30%), Gaps = 126/527 (23%)

Query: 69  QVDMEQQLMQSTTADIIRKFKDLTIRDGGSQLPLQCNK-ADGPSNV-HNAVVPYQVGPSS 126
            +D E    Q    DI+  F+D  + +        C    D P ++     +        
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDN------FDCKDVQDMPKSILSKEEI-------- 51

Query: 127 EHGALVPHQIKEKRK-----KLKPEVVLD---PGTLRM-WNLIMNIDDGTTKDQTSNEDM 177
           +H  +    +    +       K E ++       LR+ +  +M+      +  +    M
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 178 EKWWQKEREVFEGRIQSFT----ARMHLILGDRR----FKPWKGSVVDSVVGV---YLTQ 226
              + ++R+      Q F     +R+   L  R+     +P K  ++D V+G    ++  
Sbjct: 112 ---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 227 NVSDNLSSSAYMSLAARFP-----LKSTNDHTPSD-----ENL--RTTASLEPIGSNSTS 274
           +V  +        +  +       L   N ++P       + L  +   +      +S++
Sbjct: 169 DVCLSY------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 275 NGAVYDS---EGNMYFVTEPEPDRCCELKDRDD--------AFDSRIQRKALQENGDIKV 323
                 S   E      ++P    C  L    +        AF+  +  K L      +V
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYE-NC--LLVLLNVQNAKAWNAFN--LSCKILLTTRFKQV 277

Query: 324 MTDAVPSQAFDTSSVQSLDRT-------QLFP--TGNSKADVASSTKTSN-------AES 367
            TD + +      S+     T        L          D+     T+N       AES
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 368 FITQFSHTGNLKKNSVNQLFPTVNSKADVASPSQN--------------HITQSSVTQFW 413
                +   N K  + ++L   + S  +V  P++               HI    ++  W
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 414 PTGNSTADVASPSKTCIKESSIA-----ASTEIP--QLENTALLQDKVD---GILFCDEC 463
                 +DV        K S +      ++  IP   LE    L+++      I+     
Sbjct: 397 -FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 464 LDGYTK----PTRIDN------GNQASTSGRNDLKSDFRSISSSDFN 500
              +      P  +D       G+        +  + FR +   DF 
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR 501



 Score = 54.5 bits (130), Expect = 2e-07
 Identities = 80/535 (14%), Positives = 155/535 (28%), Gaps = 142/535 (26%)

Query: 278 VYDSEGNMYFVTEPEPDRCCELKDRDDA----FDSRIQRKALQENGDIKVMTDAV-PSQA 332
           V D   ++  +++ E D     KD        F + +  K  QE    K + + +  +  
Sbjct: 38  VQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWT-LLSK--QEEMVQKFVEEVLRINYK 92

Query: 333 FDTSSVQSLDRTQLFPTGNSKADVASSTKTSNAESFITQFSHTGNLKKNSVNQLFPTVNS 392
           F  S +++  R    P+  +               +I Q     N      NQ+F     
Sbjct: 93  FLMSPIKTEQRQ---PSMMT-------------RMYIEQRDRLYN-----DNQVFA---- 127

Query: 393 KADVASPSQNHITQSSVTQFWPTGNSTAD-VASPSKTCIKESSIAASTEIPQLENTALLQ 451
           K +V+        + ++ +  P  N   D V    KT +     A         +  +  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDV----CLSYKVQC 178

Query: 452 DKVDGILFCDECLDGYTKPTRIDNGNQASTSGRNDLKSDFRSISSSDFNDPFEISV-LPS 510
                I +             ++  N  S     ++          ++    + S  +  
Sbjct: 179 KMDFKIFW-------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 511 NRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKS------DMKNDRTKK----------T 554
              S               +   R   KSK Y++      +++N +             T
Sbjct: 226 RIHSI--------------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 555 TPKKNSDNTVQQDWDLLRRIYSTGEERS----HDKMDSV--DWEAVRCADESEIADAIKE 608
           T        V          + + +  S     D++ S+   +   R  D          
Sbjct: 272 T----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 609 RGQQNIIAGRIKEFLNR--------LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKS 660
           R + +IIA  I++ L            +L   I+   L  + P + ++            
Sbjct: 328 R-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDR-------- 377

Query: 661 VECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP-LPGDL--HIH---LLKEYPVMDKIQ 714
                 LS+    FP   ++  I + L W  +       +   +H   L+++ P    I 
Sbjct: 378 ------LSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 715 MYLWPRLCYLDQKT----LYELHYQMITFGKIFCKKRSPNCGACPLRG-ECKHFA 764
           +       YL+ K      Y LH  ++    I     S +     L      H  
Sbjct: 428 IP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478


>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA
           repair, 8-oxoguanine, base EX repair, PSI-2, protein
           structure initiative; 1.50A {Thermotoga maritima}
          Length = 219

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 597 ADESEIADAIKERGQQ--NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLDIE 654
               E+A+ ++E G +     A  I E    L +L   +  +     P    +  + + +
Sbjct: 82  LPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGD-----PFQSREFLVRNAK 136

Query: 655 GLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 694
           G+G K        +       +D +V R+  R G +   P
Sbjct: 137 GIGWKEASHFLRNTGVEDLAILDKHVLRLMKRHGLIQEIP 176


>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair,
           N1-methyladenine, N3-methylcytosine, hyperthermophiles,
           hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus}
           PDB: 2jhj_A
          Length = 295

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 626 LVELHGSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHIAFPV-DVNVGRIA 684
           +VE+    +LE L+    ++  EYL   +G+G  + E V  ++L    FP  D+ V R  
Sbjct: 188 IVEIAKEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALGKNVFPADDLGVRRAV 247

Query: 685 VRLGWVPLQPLPGDLHIHLLKE------YPVMDKIQMYLW 718
            RL +         +     +             I  YL+
Sbjct: 248 SRLYFNGEIQSAEKVREIARERFGRFARD-----ILFYLF 282


>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A
           {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A
           1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A*
           1wef_A* 1kg7_A 1kqj_A
          Length = 225

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 739 FGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 780
            G + C +  P C  CPL+  C   A+   +     PG   K
Sbjct: 187 LGAMICTRSKPKCSLCPLQNGCIAAANNSWA---LYPGKKPK 225


>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices,
           helix-hairpin-helix motif, iron-sulfur cluste hydrolase;
           2.30A {Homo sapiens}
          Length = 287

 Score = 38.8 bits (91), Expect = 0.007
 Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 3/45 (6%)

Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 780
            +  G   C  + P C  CP+   C+            L      
Sbjct: 204 AMELGATVCTPQRPLCSQCPVESLCRARQRVEQE---QLLASGSL 245


>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
           glycosylase, transition state analog, DNA repair; HET:
           NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
           1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
          Length = 369

 Score = 38.8 bits (91), Expect = 0.009
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFASAVASARFALPGPSEK 780
           +I  G + C  R P+C  CP++  C+ FA  VA     LP   +K
Sbjct: 193 LIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAE---ELPVKMKK 234


>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase,
           DNA mismatch, methylation; 2.00A {Methanothermobacter
           thermautotrophicusorganism_taxid} SCOP: a.96.1.2
          Length = 221

 Score = 37.2 bits (87), Expect = 0.015
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 736 MITFGKIFCKKRSPNCGACPLRGECKHFA 764
           ++ F  I C  R P C  C +   C ++ 
Sbjct: 189 LMDFSAIICAPRKPKCEKCGMSKLCSYYE 217


>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc
           genomics, PSI-2, protein structure initiative, joint
           center structural genomics; 2.55A {Bacillus halodurans}
          Length = 233

 Score = 35.8 bits (83), Expect = 0.043
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 631 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVRLGW 689
           G +D   L       V E L  I+G+G  + E   + SL  +        VG + ++ G 
Sbjct: 121 GRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS----VGDVGLQRGA 176

Query: 690 VPLQPLPGDLHIHLLKEY 707
             L          LL  +
Sbjct: 177 KWLYGNGEGDGKKLLIYH 194


>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA
           repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
          Length = 225

 Score = 33.8 bits (78), Expect = 0.18
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 631 GSIDLEWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVD 677
           G ID   L   P + V   L+ + G+G  + E   L +L     F   
Sbjct: 129 GQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSG 176


>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
           8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
           glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB:
           3knt_A*
          Length = 214

 Score = 33.5 bits (76), Expect = 0.28
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 597 ADESEIADAIKERGQQ--NIIAGRIKEFLNRLVELHGSIDLEWLRNVPPDKVKEYLLD-I 653
               E+ + +K  G +     A  I                E          +E+L+  I
Sbjct: 76  LPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFE-----NEKVAREFLVRNI 130

Query: 654 EGLGLKSVECVRLLSLQHIAFPVDVNVGRIAVRLGWVPLQP 694
           +G+G K                +D ++ R      ++   P
Sbjct: 131 KGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIP 171


>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure
           initiative, NE structural genomix research consortium,
           nysgxrc; 2.35A {Pichia guilliermondii}
          Length = 132

 Score = 31.3 bits (70), Expect = 0.67
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 306 FDSRIQ-RKALQENGDI--KVMTDAVPSQAFDTSSVQSLDRTQLFPTGNSKADVASSTKT 362
           +D+      AL ENG +   V+   +P   +   +V+ L + +L     S  D+ S   T
Sbjct: 69  YDNPASAVDALLENGAVFNGVLLGVIP---YTKDAVERLQKRKLT----SSEDIGSGITT 121

Query: 363 SNAES 367
           + AE 
Sbjct: 122 AAAEG 126


>2crg_A Metastasis associated protein MTA3; transcription factor, helix
           turn helix, structural genomics, NPPSFA; NMR {Mus
           musculus} SCOP: a.4.1.3
          Length = 70

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 171 QTSNEDMEKWWQKEREVFEGRIQSFTARMHLILGDRRFKPWKGSVV 216
            + +  ME+W   E  +FE  ++ +    + I  D        S++
Sbjct: 2   SSGSSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSII 47


>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
           AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
           CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
           d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
          Length = 513

 Score = 31.6 bits (72), Expect = 1.7
 Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 27/84 (32%)

Query: 884 DSSALVALTAEAAS-VPT--------------RKLKRCAHLRTEHHVYVLPDA------H 922
           DSS + A    AA  + T              R +    HLRT H    +P         
Sbjct: 253 DSSGVAACAHRAAGELDTVSMGTDTSNEFREARAV--VDHLRTRHREITIPTTELLAQLP 310

Query: 923 ELLRGFDRRDPD-DPSP---YLLA 942
             +   +  DPD          L 
Sbjct: 311 YAVWASESVDPDIIEYLLPLTALY 334


>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair,
           helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF);
           HET: 3DR; 2.28A {Schizosaccharomyces pombe}
          Length = 228

 Score = 30.4 bits (69), Expect = 2.7
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 29/106 (27%)

Query: 629 LHGSIDL-EWLRNVPPDKVKEYLLDIEGLGLKSVECVRLLSLQHI-AFPVDVNVGRIAVR 686
           + G I   E    +  +++ E L  I+G+G  +VE + + SL      P       +++R
Sbjct: 119 ISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP----ADDLSIR 174

Query: 687 LGWVPLQPLPGDLHIHLLKEYPVMDKIQ--------------MYLW 718
            G+          ++H L + P    +                YLW
Sbjct: 175 NGY---------RYLHRLPKIPTKMYVLKHSEICAPFRTAAAWYLW 211


>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane,
           lysosome, transport, beta barrel, phosphorylation,
           fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A*
           2v5n_A*
          Length = 627

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 5/187 (2%)

Query: 817 YQINNCEPIIEEPRSPGPQCSESPESEIDDDDFSIGDIEEIPTLRLQEREFKENFPNFME 876
           + IN C+P+      P P  +   +  ID     IG +   P L     E   NF +   
Sbjct: 183 FYINICQPLNPMHAVPCPAGAAVCKVPIDGPPIDIGRVAGPPILNPIANEIYLNFESSTP 242

Query: 877 MNKVMLQDSSALVALT----AEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRD 932
                  + ++L+A          +    +   C  +       V PD    + G    D
Sbjct: 243 CLADKHFNYTSLIAFHCKRGVSMGTPKLLRTSECDFVFEWETPVVCPDEVR-MDGCTLTD 301

Query: 933 PDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTIL 992
                 + L+  S      +  S  Y        +   +       VC  +         
Sbjct: 302 EQLLYSFNLSSLSTSTFKVTRDSRTYSVGVCTFAVGPEQGGCKDGGVCLLSGTKGASFGR 361

Query: 993 IPCRTAN 999
           +     +
Sbjct: 362 LQSMKLD 368


>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
           chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
           1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
           2jk0_A
          Length = 327

 Score = 29.9 bits (68), Expect = 4.4
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 90  DLTIRDG------GSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALV 132
            LT++         +  P     ADGP N+  AV       S   G +V
Sbjct: 106 HLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMV 154


>2gnx_A Hypothetical protein; structural genomics, protein structure
           initiative, PSI, center for eukaryotic structural
           genomics, CESG, unknown function; 2.45A {Mus musculus}
           SCOP: a.246.3.1 d.109.3.1
          Length = 344

 Score = 29.8 bits (66), Expect = 4.9
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 170 DQTSNEDMEKWWQKEREVFEGRIQSFTARM-----HLILGDRRFKPWKGSVVDSVVGVYL 224
            QT+  +M+    K      G+I SF  +       LI  +R  + ++G       G + 
Sbjct: 178 RQTTASEMKALTAKANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGH------GYHH 231

Query: 225 TQNVSDNLSSSAYMSLAARFPLKSTNDHTPS-----DENLRTTASLEPIGSNSTSNGAVY 279
             +  +              P      H P+      +      SLE +          Y
Sbjct: 232 PHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIMTDRASDLNSLEKVVH-------FY 284

Query: 280 DSEGN-MYFVTEPEP 293
           D +    YF+T PEP
Sbjct: 285 DDKVQSTYFLTRPEP 299


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 29.2 bits (65), Expect = 5.0
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 20/58 (34%)

Query: 445 ENTALLQDKVDGILFCDECLDGYTKPTR-IDNGNQASTSGRNDLKSDFRSISSSDFND 501
               +++   +G + C  C  G     + +D              S++R+     F++
Sbjct: 30  YPPKIVERFSEGDVVCALC--GLVLSDKLVDTR------------SEWRT-----FSN 68


>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
           center for infectious DISE brucellosis, orchitis,
           epididymitis, mastitis; 2.20A {Brucella melitensis}
          Length = 360

 Score = 29.7 bits (67), Expect = 6.0
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 491 FRSISSSDFNDPFEISVLPSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDR 550
               SS  F    + + L    E+F     +  D+        R +        DM+++ 
Sbjct: 26  VSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDND 85

Query: 551 TKKTTPKKNSDNTVQQDWDLLRRIYSTGEERS 582
             +   ++     ++   DLL+ +   G +R 
Sbjct: 86  IIEAHREQIGG--MRTYLDLLQHVLDHGVDRD 115


>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon
           metabolism; 2.00A {Methylosinus trichosporium} SCOP:
           a.25.1.2 PDB: 1mhz_B
          Length = 395

 Score = 29.3 bits (65), Expect = 8.0
 Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 13/145 (8%)

Query: 509 PSNRESFRTGMPQAHDATTTSKKSPRGKGKSKEYKSDMKNDRTKKTT------------P 556
           P + +  + G+     A   +   P     ++         R K  +            P
Sbjct: 4   PQSSQVTKRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNP 63

Query: 557 KKNSDNTVQQDWDLLRRIYSTGEERSHDKMDSVDWEAVRCADESEIADAIKERGQQNIIA 616
              +      DW                ++ + DW   R          +K++ ++    
Sbjct: 64  DWIAGGLDWGDWTQKFHGGRPSWGNESTELRTTDWYRHRDPARRWHHPYVKDKSEEARYT 123

Query: 617 GRIKEFLNRLVELHGSIDLEWLRNV 641
            R     +       +ID  W   +
Sbjct: 124 QRFLAAYSSE-GSIRTIDPYWRDEI 147


>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
           {Wolinella succinogenes} SCOP: c.88.1.1
          Length = 330

 Score = 29.1 bits (66), Expect = 8.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 12/52 (23%)

Query: 90  DLTIRDG------GSQLPLQCNKADGPSNVHNAVVPYQV---GPSSEHGALV 132
           +LT++        G+  P     ADGP N++NAV    V     S+  G ++
Sbjct: 104 NLTVKSQKPVVLVGAMRPGSSMSADGPMNLYNAV---NVAINKASTNKGVVI 152


>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
           hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
           3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
          Length = 326

 Score = 29.1 bits (66), Expect = 8.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 90  DLTIRDG------GSQLPLQCNKADGPSNVHNAVVPYQVGPSSEHGALV 132
           DLT++        G+  P     ADGP N++NAVV      S+  G LV
Sbjct: 100 DLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLV 148


>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
           dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
           {Thalictrum flavum} PDB: 2vne_A*
          Length = 201

 Score = 28.5 bits (63), Expect = 9.8
 Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 14/111 (12%)

Query: 105 NKADGPSNVHNAVVPYQVGPSSEHGALVPHQIKEKRKKLKPEVVLD--------PGTLRM 156
           N+    + V +  +                 + +    L P              GT+  
Sbjct: 22  NQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILD 81

Query: 157 WNLIMNIDDGTTKDQTSNEDMEKWWQKEREVFEG-----RIQSFTARMHLI 202
              +        K++    D E    K+ ++ EG      +  +   +H++
Sbjct: 82  MTFVPGEFPHEYKEKFILVDNEH-RLKKVQMIEGGYLDLGVTYYMDTIHVV 131


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,446,555
Number of extensions: 986076
Number of successful extensions: 2036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2016
Number of HSP's successfully gapped: 41
Length of query: 1105
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1001
Effective length of database: 3,798,009
Effective search space: 3801807009
Effective search space used: 3801807009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.4 bits)