Query 001301
Match_columns 1104
No_of_seqs 535 out of 3952
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 21:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 4E-264 9E-269 2256.4 74.1 1005 87-1103 5-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 2E-233 4E-238 2163.6 95.7 1005 96-1104 1-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 8E-120 2E-124 1042.3 41.0 430 518-1057 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 5.4E-79 1.2E-83 676.9 24.5 471 509-1065 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.8E-75 1.5E-79 648.1 26.1 305 518-1001 1-309 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 7.3E-72 1.6E-76 616.7 26.5 285 101-485 1-285 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 7.1E-63 1.5E-67 532.9 22.0 175 518-699 1-175 (234)
8 KOG2015 NEDD8-activating compl 100.0 1.4E-58 2.9E-63 493.1 21.7 345 507-1064 31-398 (422)
9 cd01488 Uba3_RUB Ubiquitin act 100.0 1E-57 2.3E-62 504.7 19.4 249 518-972 1-259 (291)
10 cd01493 APPBP1_RUB Ubiquitin a 100.0 6E-55 1.3E-59 507.0 22.8 366 100-481 1-420 (425)
11 KOG2014 SMT3/SUMO-activating c 100.0 3.3E-53 7.2E-58 451.5 22.5 314 94-482 6-322 (331)
12 KOG2016 NEDD8-activating compl 100.0 3.2E-52 6.9E-57 460.5 13.3 375 98-481 6-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.7E-37 3.6E-42 329.1 19.3 149 100-250 2-153 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 1.4E-36 3E-41 322.5 18.6 149 101-251 1-157 (198)
15 PRK08223 hypothetical protein; 100.0 3E-36 6.6E-41 331.6 15.7 182 495-686 6-202 (287)
16 TIGR02356 adenyl_thiF thiazole 100.0 4.9E-36 1.1E-40 319.5 14.3 175 498-681 1-178 (202)
17 cd00757 ThiF_MoeB_HesA_family 100.0 3.1E-35 6.6E-40 319.5 16.7 164 498-670 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 2.2E-35 4.8E-40 323.2 13.4 164 497-669 11-177 (245)
19 PRK07411 hypothetical protein; 100.0 4E-35 8.7E-40 341.1 13.7 177 496-681 16-196 (390)
20 PRK08328 hypothetical protein; 100.0 7E-35 1.5E-39 316.7 12.9 164 497-669 8-172 (231)
21 PRK05597 molybdopterin biosynt 100.0 1.5E-34 3.3E-39 332.6 13.9 178 496-682 6-187 (355)
22 TIGR02355 moeB molybdopterin s 100.0 4.9E-34 1.1E-38 311.2 14.8 166 496-670 2-170 (240)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 6.1E-34 1.3E-38 301.9 13.9 152 497-658 2-153 (197)
24 cd01493 APPBP1_RUB Ubiquitin a 100.0 3.6E-32 7.8E-37 316.7 28.8 186 497-692 1-186 (425)
25 PRK07878 molybdopterin biosynt 100.0 1.2E-33 2.6E-38 329.5 14.4 164 497-669 21-190 (392)
26 PRK07878 molybdopterin biosynt 100.0 9.6E-33 2.1E-37 321.9 21.7 155 94-250 15-175 (392)
27 PRK05600 thiamine biosynthesis 100.0 1.3E-33 2.8E-38 325.5 13.3 175 497-680 20-201 (370)
28 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6.3E-33 1.4E-37 310.7 17.9 279 121-474 1-285 (312)
29 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.7E-33 5.8E-38 310.1 13.2 181 498-694 1-183 (286)
30 cd01485 E1-1_like Ubiquitin ac 100.0 3.1E-33 6.7E-38 296.9 13.1 154 498-658 1-156 (198)
31 PRK05597 molybdopterin biosynt 100.0 2.4E-32 5.2E-37 314.4 19.7 152 96-249 3-160 (355)
32 PRK12475 thiamine/molybdopteri 100.0 8.1E-33 1.8E-37 315.6 14.8 166 496-670 2-171 (338)
33 PRK07688 thiamine/molybdopteri 100.0 1.5E-32 3.2E-37 313.6 14.4 165 496-669 2-170 (339)
34 PRK08223 hypothetical protein; 100.0 1.5E-31 3.2E-36 294.5 17.7 160 97-258 5-172 (287)
35 PRK05690 molybdopterin biosynt 100.0 4.2E-31 9.1E-36 289.4 18.5 155 94-250 5-165 (245)
36 TIGR02356 adenyl_thiF thiazole 100.0 1.8E-31 3.8E-36 284.6 13.9 149 101-251 1-155 (202)
37 PRK08762 molybdopterin biosynt 100.0 3.9E-31 8.4E-36 307.6 14.8 164 497-669 114-283 (376)
38 KOG2017 Molybdopterin synthase 100.0 4.3E-32 9.3E-37 293.5 6.0 174 486-672 38-214 (427)
39 COG0476 ThiF Dinucleotide-util 100.0 4.3E-31 9.4E-36 291.7 13.8 166 496-670 8-176 (254)
40 PRK07411 hypothetical protein; 100.0 1.3E-30 2.7E-35 303.5 18.2 165 93-259 10-183 (390)
41 cd00757 ThiF_MoeB_HesA_family 100.0 9.8E-31 2.1E-35 284.2 16.2 149 101-251 1-155 (228)
42 PF09358 UBA_e1_C: Ubiquitin-a 100.0 7.4E-32 1.6E-36 263.8 6.4 123 977-1099 1-125 (125)
43 cd01488 Uba3_RUB Ubiquitin act 100.0 4.8E-30 1E-34 284.6 20.8 260 121-483 1-275 (291)
44 PRK08328 hypothetical protein; 100.0 4.4E-30 9.6E-35 279.1 18.1 155 95-251 3-162 (231)
45 PRK14851 hypothetical protein; 100.0 1E-30 2.2E-35 319.8 14.6 166 495-670 22-189 (679)
46 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 1.1E-30 2.3E-35 282.9 12.5 161 514-683 9-193 (244)
47 PRK05600 thiamine biosynthesis 100.0 5.8E-30 1.3E-34 295.3 18.1 155 94-250 14-174 (370)
48 TIGR02355 moeB molybdopterin s 100.0 3.4E-30 7.4E-35 281.1 15.1 148 99-248 2-155 (240)
49 PRK14852 hypothetical protein; 100.0 2.2E-30 4.8E-35 319.4 14.7 165 495-669 311-477 (989)
50 KOG2013 SMT3/SUMO-activating c 100.0 5.1E-30 1.1E-34 286.7 11.0 363 112-478 5-417 (603)
51 PRK15116 sulfur acceptor prote 100.0 1.2E-29 2.6E-34 278.7 13.5 163 496-667 10-174 (268)
52 cd01484 E1-2_like Ubiquitin ac 100.0 5.4E-28 1.2E-32 261.7 22.0 227 121-459 1-233 (234)
53 PRK07688 thiamine/molybdopteri 100.0 2.3E-28 4.9E-33 279.2 17.5 151 99-251 2-160 (339)
54 PRK12475 thiamine/molybdopteri 100.0 2.6E-28 5.7E-33 278.6 16.9 151 99-251 2-160 (338)
55 cd00755 YgdL_like Family of ac 100.0 1.7E-28 3.8E-33 265.3 13.8 155 506-668 1-156 (231)
56 PRK07877 hypothetical protein; 100.0 1.8E-28 3.9E-33 300.4 14.2 182 471-669 65-251 (722)
57 PRK08644 thiamine biosynthesis 100.0 2.7E-28 5.8E-33 261.6 13.5 156 496-661 8-164 (212)
58 TIGR01408 Ube1 ubiquitin-activ 100.0 5.2E-28 1.1E-32 306.1 16.8 164 98-263 398-574 (1008)
59 COG0476 ThiF Dinucleotide-util 99.9 1.4E-27 3.1E-32 263.8 16.5 158 94-253 3-166 (254)
60 PF00899 ThiF: ThiF family; I 99.9 6E-28 1.3E-32 241.3 11.7 135 515-658 1-135 (135)
61 KOG2017 Molybdopterin synthase 99.9 3.7E-28 8.1E-33 263.1 10.2 171 93-265 38-217 (427)
62 PRK15116 sulfur acceptor prote 99.9 2.8E-27 6E-32 260.0 15.8 143 95-239 6-153 (268)
63 COG1179 Dinucleotide-utilizing 99.9 8.1E-28 1.8E-32 252.2 10.9 161 495-663 9-170 (263)
64 KOG2015 NEDD8-activating compl 99.9 1.7E-26 3.6E-31 247.8 19.8 272 109-482 30-318 (422)
65 PRK08762 molybdopterin biosynt 99.9 8.2E-27 1.8E-31 271.4 18.1 156 94-251 108-269 (376)
66 PRK14852 hypothetical protein; 99.9 3.6E-27 7.9E-32 291.1 15.9 154 96-251 309-468 (989)
67 PTZ00245 ubiquitin activating 99.9 4.9E-27 1.1E-31 248.5 13.0 121 96-219 3-123 (287)
68 cd01490 Ube1_repeat2 Ubiquitin 99.9 5E-26 1.1E-30 264.0 22.5 131 121-253 1-144 (435)
69 TIGR01381 E1_like_apg7 E1-like 99.9 7.1E-27 1.5E-31 277.3 14.9 143 510-658 332-490 (664)
70 PRK14851 hypothetical protein; 99.9 1.1E-26 2.3E-31 284.5 16.8 156 94-251 18-179 (679)
71 cd01483 E1_enzyme_family Super 99.9 1.9E-26 4.1E-31 232.7 12.5 133 518-659 1-133 (143)
72 TIGR03603 cyclo_dehy_ocin bact 99.9 1E-26 2.3E-31 263.0 8.8 149 497-669 53-207 (318)
73 PF00899 ThiF: ThiF family; I 99.9 2.7E-25 5.8E-30 222.2 16.3 130 118-249 1-134 (135)
74 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.6E-25 3.4E-30 246.5 13.5 134 518-658 1-150 (307)
75 cd00755 YgdL_like Family of ac 99.9 3.2E-25 7E-30 239.9 14.6 132 109-242 1-137 (231)
76 cd01487 E1_ThiF_like E1_ThiF_l 99.9 2.7E-25 5.9E-30 231.4 13.0 142 518-669 1-145 (174)
77 PRK08644 thiamine biosynthesis 99.9 5.6E-25 1.2E-29 236.0 15.6 145 99-246 8-157 (212)
78 cd01483 E1_enzyme_family Super 99.9 8.7E-25 1.9E-29 220.6 15.1 129 121-251 1-133 (143)
79 TIGR02354 thiF_fam2 thiamine b 99.9 2E-24 4.3E-29 229.6 14.2 156 501-668 6-167 (200)
80 COG1179 Dinucleotide-utilizing 99.9 3.1E-24 6.8E-29 225.4 12.9 144 96-241 7-155 (263)
81 PTZ00245 ubiquitin activating 99.9 2.9E-24 6.4E-29 227.5 11.1 114 497-626 7-120 (287)
82 PRK07877 hypothetical protein; 99.9 7.7E-24 1.7E-28 259.8 15.7 149 94-248 82-235 (722)
83 TIGR01381 E1_like_apg7 E1-like 99.9 1.4E-23 3E-28 249.5 14.3 168 82-252 301-492 (664)
84 PRK06153 hypothetical protein; 99.9 1.7E-23 3.7E-28 237.0 12.0 129 509-649 169-300 (393)
85 KOG2014 SMT3/SUMO-activating c 99.9 5.1E-23 1.1E-27 220.9 10.6 154 497-660 12-165 (331)
86 cd01486 Apg7 Apg7 is an E1-lik 99.9 2.2E-22 4.8E-27 221.7 14.7 129 121-252 1-152 (307)
87 TIGR03603 cyclo_dehy_ocin bact 99.9 3.2E-22 6.9E-27 226.6 13.3 146 94-252 47-198 (318)
88 KOG2016 NEDD8-activating compl 99.9 3E-22 6.5E-27 223.2 11.6 188 495-692 6-193 (523)
89 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.2E-21 2.7E-26 204.1 15.4 127 121-250 1-132 (174)
90 KOG2336 Molybdopterin biosynth 99.9 4E-22 8.6E-27 210.2 10.4 168 497-670 60-240 (422)
91 TIGR02354 thiF_fam2 thiamine b 99.9 2.1E-21 4.5E-26 206.6 14.8 139 106-248 8-151 (200)
92 PF02134 UBACT: Repeat in ubiq 99.8 1.4E-21 3E-26 170.8 5.4 66 903-970 1-66 (67)
93 KOG2018 Predicted dinucleotide 99.8 1.7E-20 3.6E-25 201.1 10.1 157 498-662 56-213 (430)
94 KOG2012 Ubiquitin activating e 99.8 1.4E-20 3E-25 222.4 5.9 152 99-252 410-574 (1013)
95 PRK06153 hypothetical protein; 99.8 2E-19 4.3E-24 204.2 14.2 126 111-240 168-299 (393)
96 KOG2018 Predicted dinucleotide 99.8 8.1E-20 1.8E-24 195.9 10.4 145 94-240 49-198 (430)
97 TIGR03736 PRTRC_ThiF PRTRC sys 99.8 2.6E-18 5.7E-23 186.6 12.9 129 117-249 9-151 (244)
98 KOG2336 Molybdopterin biosynth 99.6 3.5E-15 7.6E-20 158.1 10.2 156 94-252 54-230 (422)
99 PF10585 UBA_e1_thiolCys: Ubiq 99.5 3E-15 6.5E-20 119.8 1.4 45 661-705 1-45 (45)
100 TIGR03693 ocin_ThiF_like putat 99.4 2E-13 4.3E-18 161.8 9.2 146 497-668 104-260 (637)
101 KOG2337 Ubiquitin activating E 99.4 5.7E-13 1.2E-17 151.8 8.8 168 83-253 304-495 (669)
102 KOG2337 Ubiquitin activating E 99.3 4E-12 8.6E-17 145.0 8.5 133 510-647 334-482 (669)
103 TIGR03693 ocin_ThiF_like putat 99.1 3E-10 6.5E-15 135.2 14.1 137 94-246 98-245 (637)
104 COG4015 Predicted dinucleotide 98.3 2.9E-06 6.3E-11 84.7 9.0 121 119-246 18-146 (217)
105 PF02134 UBACT: Repeat in ubiq 98.2 5.4E-07 1.2E-11 79.2 2.7 50 802-856 1-50 (67)
106 PF08825 E2_bind: E2 binding d 97.7 4.6E-05 1E-09 69.8 4.4 63 1013-1075 1-75 (84)
107 PRK06718 precorrin-2 dehydroge 97.5 0.0015 3.2E-08 70.3 13.2 96 116-240 7-102 (202)
108 TIGR01470 cysG_Nterm siroheme 97.4 0.0021 4.5E-08 69.3 13.4 105 116-248 6-110 (205)
109 PF01488 Shikimate_DH: Shikima 97.2 0.0011 2.5E-08 66.4 8.6 78 115-215 8-85 (135)
110 TIGR03882 cyclo_dehyd_2 bacter 97.2 0.00037 7.9E-09 74.3 5.0 60 507-566 96-160 (193)
111 COG1748 LYS9 Saccharopine dehy 97.1 0.00091 2E-08 78.0 7.8 99 517-648 2-100 (389)
112 COG1748 LYS9 Saccharopine dehy 97.1 0.0023 4.9E-08 74.7 10.1 98 120-244 2-104 (389)
113 PRK12549 shikimate 5-dehydroge 97.0 0.002 4.4E-08 72.9 9.2 76 117-213 125-200 (284)
114 PF13241 NAD_binding_7: Putati 97.0 0.0017 3.7E-08 62.0 6.9 89 116-239 4-92 (103)
115 PRK06719 precorrin-2 dehydroge 97.0 0.011 2.5E-07 60.9 13.1 86 116-230 10-95 (157)
116 PRK12549 shikimate 5-dehydroge 96.9 0.0021 4.5E-08 72.8 8.1 76 514-623 125-200 (284)
117 COG4015 Predicted dinucleotide 96.9 0.0022 4.9E-08 64.5 7.2 126 516-654 18-146 (217)
118 PRK05562 precorrin-2 dehydroge 96.8 0.015 3.3E-07 63.2 13.4 100 116-243 22-121 (223)
119 PRK06718 precorrin-2 dehydroge 96.6 0.0074 1.6E-07 64.9 8.7 92 513-644 7-98 (202)
120 PF01488 Shikimate_DH: Shikima 96.6 0.0047 1E-07 62.0 6.7 79 512-626 8-86 (135)
121 PF13241 NAD_binding_7: Putati 96.2 0.0089 1.9E-07 57.2 5.7 87 513-645 4-90 (103)
122 TIGR01470 cysG_Nterm siroheme 96.1 0.017 3.8E-07 62.2 8.2 95 514-647 7-101 (205)
123 PRK06719 precorrin-2 dehydroge 96.0 0.025 5.4E-07 58.4 8.4 85 513-639 10-94 (157)
124 PRK14027 quinate/shikimate deh 95.8 0.024 5.2E-07 64.2 8.0 78 117-213 125-202 (283)
125 COG1648 CysG Siroheme synthase 95.8 0.048 1E-06 59.0 9.9 105 116-248 9-113 (210)
126 PRK10637 cysG siroheme synthas 95.8 0.087 1.9E-06 63.8 13.2 104 116-247 9-112 (457)
127 PF03435 Saccharop_dh: Sacchar 95.4 0.022 4.7E-07 67.3 6.0 97 519-646 1-97 (386)
128 PF00056 Ldh_1_N: lactate/mala 95.2 0.06 1.3E-06 54.5 7.7 75 121-214 2-78 (141)
129 PRK05562 precorrin-2 dehydroge 95.2 0.056 1.2E-06 58.9 7.9 97 513-648 22-118 (223)
130 PRK14106 murD UDP-N-acetylmura 94.9 0.11 2.3E-06 62.7 10.0 127 117-273 3-129 (450)
131 PRK12548 shikimate 5-dehydroge 94.9 0.093 2E-06 59.7 8.8 59 117-191 124-182 (289)
132 TIGR01809 Shik-DH-AROM shikima 94.9 0.056 1.2E-06 61.2 7.0 75 117-214 123-199 (282)
133 PRK14027 quinate/shikimate deh 94.7 0.068 1.5E-06 60.5 7.2 78 514-623 125-202 (283)
134 PF03435 Saccharop_dh: Sacchar 94.7 0.11 2.4E-06 61.3 9.3 90 122-237 1-96 (386)
135 COG0373 HemA Glutamyl-tRNA red 94.7 0.056 1.2E-06 63.7 6.6 76 116-217 175-250 (414)
136 COG0169 AroE Shikimate 5-dehyd 94.6 0.087 1.9E-06 59.5 7.6 74 118-213 125-198 (283)
137 PRK00258 aroE shikimate 5-dehy 94.5 0.098 2.1E-06 59.1 8.0 75 116-214 120-194 (278)
138 PRK12548 shikimate 5-dehydroge 94.5 0.084 1.8E-06 60.0 7.3 84 514-623 124-207 (289)
139 cd05291 HicDH_like L-2-hydroxy 94.3 0.11 2.4E-06 59.5 7.9 72 120-214 1-77 (306)
140 TIGR01809 Shik-DH-AROM shikima 94.3 0.08 1.7E-06 60.0 6.6 34 514-552 123-156 (282)
141 PRK13940 glutamyl-tRNA reducta 94.3 0.075 1.6E-06 63.3 6.6 77 116-217 178-254 (414)
142 KOG4169 15-hydroxyprostaglandi 94.2 0.079 1.7E-06 57.1 5.8 84 514-623 3-91 (261)
143 PRK12749 quinate/shikimate deh 94.1 0.18 4E-06 57.2 9.0 52 117-184 122-173 (288)
144 PRK07819 3-hydroxybutyryl-CoA 94.1 0.15 3.3E-06 57.8 8.3 170 517-711 6-185 (286)
145 PRK04148 hypothetical protein; 94.0 0.49 1.1E-05 47.5 10.6 91 118-239 16-109 (134)
146 COG0373 HemA Glutamyl-tRNA red 93.9 0.087 1.9E-06 62.2 6.0 75 513-626 175-249 (414)
147 TIGR03882 cyclo_dehyd_2 bacter 93.9 0.038 8.3E-07 59.0 2.8 57 106-162 92-158 (193)
148 PRK00258 aroE shikimate 5-dehy 93.9 0.11 2.4E-06 58.6 6.7 36 513-553 120-155 (278)
149 PF05237 MoeZ_MoeB: MoeZ/MoeB 93.8 0.035 7.7E-07 51.1 2.1 41 441-481 23-64 (84)
150 COG0569 TrkA K+ transport syst 93.8 0.17 3.7E-06 55.4 7.7 96 517-645 1-97 (225)
151 PRK14106 murD UDP-N-acetylmura 93.8 0.11 2.3E-06 62.7 6.7 36 514-555 3-38 (450)
152 PRK13940 glutamyl-tRNA reducta 93.6 0.11 2.4E-06 62.0 6.2 35 513-552 178-212 (414)
153 PF00070 Pyr_redox: Pyridine n 93.5 0.076 1.6E-06 48.0 3.7 31 518-554 1-31 (80)
154 PF03446 NAD_binding_2: NAD bi 93.5 0.12 2.5E-06 53.6 5.5 111 120-243 2-123 (163)
155 COG1648 CysG Siroheme synthase 93.4 0.094 2E-06 56.7 4.8 95 513-646 9-103 (210)
156 cd01065 NAD_bind_Shikimate_DH 93.3 0.25 5.5E-06 50.1 7.6 35 117-151 17-51 (155)
157 PF14732 UAE_UbL: Ubiquitin/SU 93.3 0.043 9.4E-07 50.9 1.7 48 1017-1064 7-56 (87)
158 PF01113 DapB_N: Dihydrodipico 93.2 0.21 4.5E-06 49.4 6.6 99 518-652 2-102 (124)
159 PRK12749 quinate/shikimate deh 93.1 0.19 4E-06 57.2 6.9 83 514-623 122-204 (288)
160 PF02826 2-Hacid_dh_C: D-isome 93.1 0.027 5.9E-07 59.3 0.0 39 511-555 31-69 (178)
161 PRK00066 ldh L-lactate dehydro 93.1 0.29 6.3E-06 56.4 8.4 75 119-214 6-82 (315)
162 cd05213 NAD_bind_Glutamyl_tRNA 93.0 0.33 7.2E-06 55.8 8.8 76 117-218 176-251 (311)
163 PLN00203 glutamyl-tRNA reducta 92.9 0.2 4.3E-06 61.4 7.1 76 117-215 264-339 (519)
164 PRK05808 3-hydroxybutyryl-CoA 92.9 0.47 1E-05 53.6 9.7 32 517-554 4-35 (282)
165 cd05290 LDH_3 A subgroup of L- 92.7 0.4 8.6E-06 55.0 8.8 73 121-214 1-77 (307)
166 KOG4169 15-hydroxyprostaglandi 92.7 0.27 5.9E-06 53.1 6.9 63 117-200 3-66 (261)
167 TIGR01035 hemA glutamyl-tRNA r 92.6 0.32 7E-06 58.2 8.2 36 116-151 177-212 (417)
168 PF02254 TrkA_N: TrkA-N domain 92.5 1.2 2.6E-05 42.8 10.8 82 122-231 1-88 (116)
169 PRK07066 3-hydroxybutyryl-CoA 92.4 0.48 1E-05 54.7 9.0 171 517-711 8-182 (321)
170 PF10585 UBA_e1_thiolCys: Ubiq 92.4 0.12 2.7E-06 41.8 2.9 23 746-768 23-45 (45)
171 PLN02602 lactate dehydrogenase 92.4 0.36 7.8E-06 56.4 8.0 73 120-214 38-114 (350)
172 cd05293 LDH_1 A subgroup of L- 92.4 0.38 8.2E-06 55.4 8.1 74 119-214 3-80 (312)
173 PF01118 Semialdhyde_dh: Semia 92.3 0.23 5.1E-06 48.7 5.5 50 611-661 62-112 (121)
174 cd00300 LDH_like L-lactate deh 92.3 0.41 8.9E-06 54.7 8.2 71 122-214 1-75 (300)
175 COG0169 AroE Shikimate 5-dehyd 92.1 0.32 7E-06 55.0 7.0 74 515-623 125-198 (283)
176 PRK09260 3-hydroxybutyryl-CoA 91.9 0.17 3.7E-06 57.3 4.6 33 517-555 2-34 (288)
177 PRK10637 cysG siroheme synthas 91.9 0.23 5.1E-06 60.1 6.0 93 513-644 9-101 (457)
178 cd01080 NAD_bind_m-THF_DH_Cycl 91.8 0.22 4.8E-06 52.0 5.0 34 513-552 41-75 (168)
179 COG0569 TrkA K+ transport syst 91.8 1.3 2.9E-05 48.5 11.2 105 120-252 1-113 (225)
180 cd05291 HicDH_like L-2-hydroxy 91.5 0.54 1.2E-05 53.9 8.1 33 517-553 1-33 (306)
181 PRK00141 murD UDP-N-acetylmura 91.5 0.64 1.4E-05 56.6 9.1 95 112-237 8-103 (473)
182 PRK05708 2-dehydropantoate 2-r 91.4 0.67 1.5E-05 53.1 8.8 33 119-152 2-34 (305)
183 PLN00203 glutamyl-tRNA reducta 91.4 3.6 7.8E-05 50.6 15.4 34 514-552 264-297 (519)
184 cd05311 NAD_bind_2_malic_enz N 91.3 0.21 4.6E-06 54.7 4.4 38 116-153 22-61 (226)
185 cd05311 NAD_bind_2_malic_enz N 91.3 0.15 3.2E-06 55.9 3.1 37 513-554 22-60 (226)
186 PRK06130 3-hydroxybutyryl-CoA 91.1 1.3 2.8E-05 50.7 10.8 32 517-554 5-36 (311)
187 PRK05476 S-adenosyl-L-homocyst 90.9 0.8 1.7E-05 54.7 8.9 36 514-555 210-245 (425)
188 cd01078 NAD_bind_H4MPT_DH NADP 90.8 1 2.2E-05 47.9 8.8 78 116-214 25-106 (194)
189 PF00056 Ldh_1_N: lactate/mala 90.7 0.56 1.2E-05 47.5 6.4 75 517-624 1-78 (141)
190 cd05213 NAD_bind_Glutamyl_tRNA 90.7 0.52 1.1E-05 54.2 6.9 36 514-554 176-211 (311)
191 PRK01438 murD UDP-N-acetylmura 90.7 0.97 2.1E-05 55.1 9.7 128 117-273 14-143 (480)
192 PRK01710 murD UDP-N-acetylmura 90.7 1.3 2.8E-05 53.8 10.6 97 115-237 10-106 (458)
193 PRK04148 hypothetical protein; 90.6 1.2 2.5E-05 44.9 8.4 91 515-644 16-106 (134)
194 PRK08293 3-hydroxybutyryl-CoA 90.6 1.9 4.1E-05 48.9 11.3 32 517-554 4-35 (287)
195 PTZ00117 malate dehydrogenase; 90.6 0.61 1.3E-05 53.8 7.4 35 118-152 4-38 (319)
196 PRK00066 ldh L-lactate dehydro 90.5 0.52 1.1E-05 54.3 6.7 75 516-623 6-81 (315)
197 COG0111 SerA Phosphoglycerate 90.4 0.32 6.9E-06 56.2 4.8 90 513-622 139-232 (324)
198 PRK00045 hemA glutamyl-tRNA re 90.4 0.66 1.4E-05 55.7 7.8 75 117-217 180-254 (423)
199 cd05290 LDH_3 A subgroup of L- 90.4 0.55 1.2E-05 53.9 6.7 31 518-552 1-31 (307)
200 PF03807 F420_oxidored: NADP o 90.3 1.6 3.5E-05 40.5 8.7 78 121-225 1-81 (96)
201 PF03446 NAD_binding_2: NAD bi 90.3 0.92 2E-05 46.9 7.7 30 517-552 2-31 (163)
202 PTZ00082 L-lactate dehydrogena 90.1 0.78 1.7E-05 53.0 7.7 35 514-553 4-38 (321)
203 PLN02206 UDP-glucuronate decar 89.9 1.2 2.7E-05 53.7 9.6 103 118-245 118-238 (442)
204 PTZ00082 L-lactate dehydrogena 89.9 1.1 2.3E-05 51.9 8.6 35 117-151 4-38 (321)
205 PRK06197 short chain dehydroge 89.8 0.63 1.4E-05 52.9 6.6 36 512-553 12-48 (306)
206 PRK07063 short chain dehydroge 89.7 0.88 1.9E-05 50.2 7.5 65 513-602 4-69 (260)
207 PRK09599 6-phosphogluconate de 89.6 0.93 2E-05 51.8 7.9 112 121-243 2-123 (301)
208 cd01075 NAD_bind_Leu_Phe_Val_D 89.6 1.8 3.9E-05 46.6 9.5 36 116-152 25-60 (200)
209 PRK06197 short chain dehydroge 89.5 1.1 2.3E-05 51.1 8.2 42 109-151 6-48 (306)
210 PRK15469 ghrA bifunctional gly 89.5 0.67 1.5E-05 53.3 6.5 34 514-553 134-167 (312)
211 PRK05854 short chain dehydroge 89.5 0.84 1.8E-05 52.3 7.4 63 514-601 12-75 (313)
212 cd01080 NAD_bind_m-THF_DH_Cycl 89.3 0.67 1.5E-05 48.5 5.8 35 116-151 41-76 (168)
213 cd05293 LDH_1 A subgroup of L- 89.2 1.4 2.9E-05 50.9 8.7 34 516-553 3-36 (312)
214 COG1086 Predicted nucleoside-d 89.2 1.5 3.3E-05 53.4 9.3 94 99-211 229-331 (588)
215 PLN02819 lysine-ketoglutarate 89.1 0.98 2.1E-05 59.4 8.3 105 514-647 567-679 (1042)
216 PRK14192 bifunctional 5,10-met 89.0 0.55 1.2E-05 53.3 5.3 34 513-552 156-190 (283)
217 COG0300 DltE Short-chain dehyd 89.0 1.1 2.3E-05 50.3 7.4 65 514-604 4-69 (265)
218 TIGR00872 gnd_rel 6-phosphoglu 89.0 0.64 1.4E-05 53.1 5.9 111 121-242 2-121 (298)
219 PRK08410 2-hydroxyacid dehydro 89.0 0.77 1.7E-05 52.8 6.5 35 513-553 142-176 (311)
220 PRK13243 glyoxylate reductase; 88.9 0.6 1.3E-05 54.2 5.6 35 513-553 147-181 (333)
221 TIGR02992 ectoine_eutC ectoine 88.9 1.4 3E-05 51.1 8.6 75 119-215 129-204 (326)
222 PRK06130 3-hydroxybutyryl-CoA 88.9 2.4 5.1E-05 48.6 10.5 32 120-152 5-36 (311)
223 TIGR01759 MalateDH-SF1 malate 88.8 0.84 1.8E-05 52.8 6.7 76 120-214 4-88 (323)
224 PRK05808 3-hydroxybutyryl-CoA 88.7 2.2 4.7E-05 48.2 9.9 32 120-152 4-35 (282)
225 PLN02166 dTDP-glucose 4,6-dehy 88.6 1.7 3.7E-05 52.4 9.4 102 119-245 120-239 (436)
226 cd01078 NAD_bind_H4MPT_DH NADP 88.6 1 2.2E-05 47.9 6.8 83 513-626 25-108 (194)
227 PRK07819 3-hydroxybutyryl-CoA 88.5 1.6 3.4E-05 49.6 8.6 33 120-153 6-38 (286)
228 PRK06487 glycerate dehydrogena 88.4 0.78 1.7E-05 52.9 6.1 35 513-553 145-179 (317)
229 PF13460 NAD_binding_10: NADH( 88.4 3.3 7.3E-05 42.9 10.5 93 122-245 1-103 (183)
230 cd05296 GH4_P_beta_glucosidase 88.4 1.3 2.7E-05 53.2 8.0 109 121-249 2-117 (419)
231 TIGR00507 aroE shikimate 5-deh 88.3 1.4 3E-05 49.6 8.0 33 118-151 116-148 (270)
232 PF02737 3HCDH_N: 3-hydroxyacy 88.3 0.87 1.9E-05 48.1 5.9 32 121-153 1-32 (180)
233 PLN02819 lysine-ketoglutarate 88.2 1.4 3.1E-05 57.9 8.9 96 118-239 568-679 (1042)
234 PRK05476 S-adenosyl-L-homocyst 88.2 2 4.2E-05 51.5 9.3 67 86-153 176-245 (425)
235 PF01118 Semialdhyde_dh: Semia 88.1 2.6 5.7E-05 41.3 8.8 89 121-237 1-95 (121)
236 PRK02705 murD UDP-N-acetylmura 88.1 2.3 5E-05 51.4 10.3 126 120-273 1-130 (459)
237 PRK07574 formate dehydrogenase 88.1 0.6 1.3E-05 55.2 5.0 35 513-553 189-223 (385)
238 cd00401 AdoHcyase S-adenosyl-L 88.1 1.7 3.8E-05 51.8 8.8 36 514-555 200-235 (413)
239 PRK06932 glycerate dehydrogena 88.0 0.63 1.4E-05 53.6 5.0 34 513-552 144-177 (314)
240 COG0039 Mdh Malate/lactate deh 88.0 0.82 1.8E-05 52.3 5.8 73 120-214 1-78 (313)
241 PTZ00325 malate dehydrogenase; 87.9 0.98 2.1E-05 52.1 6.5 77 117-214 6-85 (321)
242 PF01113 DapB_N: Dihydrodipico 87.9 1.9 4.1E-05 42.6 7.7 94 121-239 2-98 (124)
243 TIGR00507 aroE shikimate 5-deh 87.8 1.1 2.4E-05 50.4 6.8 33 514-552 115-147 (270)
244 PLN02602 lactate dehydrogenase 87.8 1.6 3.4E-05 51.1 8.2 33 517-553 38-70 (350)
245 PRK06141 ornithine cyclodeamin 87.7 1.6 3.5E-05 50.3 8.1 77 116-215 122-199 (314)
246 PRK07831 short chain dehydroge 87.7 1.6 3.5E-05 48.1 8.0 33 514-552 15-49 (262)
247 PRK09496 trkA potassium transp 87.7 2.3 5E-05 51.2 9.8 94 117-238 229-328 (453)
248 cd00401 AdoHcyase S-adenosyl-L 87.6 2 4.4E-05 51.2 9.0 65 84-152 164-234 (413)
249 PRK07062 short chain dehydroge 87.6 1.7 3.8E-05 47.9 8.1 64 514-602 6-70 (265)
250 PRK04308 murD UDP-N-acetylmura 87.6 2.4 5.2E-05 51.2 9.9 93 117-237 3-96 (445)
251 COG1086 Predicted nucleoside-d 87.6 1.9 4.1E-05 52.6 8.7 88 509-623 243-333 (588)
252 PRK15438 erythronate-4-phospha 87.6 0.99 2.1E-05 53.2 6.3 35 513-553 113-147 (378)
253 PRK07634 pyrroline-5-carboxyla 87.5 2.7 5.8E-05 46.2 9.5 81 118-225 3-86 (245)
254 PF01210 NAD_Gly3P_dh_N: NAD-d 87.4 1.2 2.6E-05 45.9 6.2 98 518-644 1-100 (157)
255 COG0771 MurD UDP-N-acetylmuram 87.4 1.4 3.1E-05 52.9 7.6 92 117-236 5-97 (448)
256 PRK09242 tropinone reductase; 87.4 1.6 3.5E-05 47.9 7.7 86 513-623 6-96 (257)
257 PRK08618 ornithine cyclodeamin 87.4 2.2 4.8E-05 49.4 9.0 78 118-217 126-204 (325)
258 PRK07530 3-hydroxybutyryl-CoA 87.3 5.4 0.00012 45.2 12.1 33 119-152 4-36 (292)
259 TIGR00936 ahcY adenosylhomocys 87.3 2 4.4E-05 51.1 8.7 36 514-555 193-228 (406)
260 PRK06436 glycerate dehydrogena 87.3 0.71 1.5E-05 52.9 4.9 36 513-554 119-154 (303)
261 PRK11880 pyrroline-5-carboxyla 87.2 1.2 2.5E-05 49.8 6.4 33 517-552 3-35 (267)
262 cd05191 NAD_bind_amino_acid_DH 87.2 0.92 2E-05 41.7 4.7 37 116-152 20-56 (86)
263 PRK00048 dihydrodipicolinate r 87.1 1.7 3.7E-05 48.5 7.7 127 517-698 2-130 (257)
264 PRK07066 3-hydroxybutyryl-CoA 87.0 1.2 2.6E-05 51.5 6.4 109 120-243 8-122 (321)
265 PLN03139 formate dehydrogenase 87.0 0.66 1.4E-05 54.8 4.4 35 513-553 196-230 (386)
266 PRK14619 NAD(P)H-dependent gly 86.9 1.5 3.3E-05 50.2 7.4 33 516-554 4-36 (308)
267 TIGR01757 Malate-DH_plant mala 86.9 2 4.3E-05 50.9 8.3 77 119-214 44-129 (387)
268 PRK08251 short chain dehydroge 86.8 2 4.2E-05 46.9 7.9 62 516-602 2-64 (248)
269 cd05191 NAD_bind_amino_acid_DH 86.8 0.69 1.5E-05 42.6 3.6 36 514-554 21-56 (86)
270 PRK12490 6-phosphogluconate de 86.7 1.3 2.9E-05 50.5 6.7 32 121-153 2-33 (299)
271 PF02254 TrkA_N: TrkA-N domain 86.7 1.8 3.9E-05 41.6 6.7 85 519-638 1-85 (116)
272 PF03807 F420_oxidored: NADP o 86.6 0.98 2.1E-05 42.0 4.6 90 518-645 1-92 (96)
273 cd00300 LDH_like L-lactate deh 86.5 1.8 4E-05 49.5 7.7 72 519-624 1-75 (300)
274 PRK00257 erythronate-4-phospha 86.5 0.86 1.9E-05 53.8 5.0 35 513-553 113-147 (381)
275 PLN02427 UDP-apiose/xylose syn 86.4 3.2 7E-05 48.9 9.9 36 116-151 11-47 (386)
276 PLN03209 translocon at the inn 86.4 2.4 5.2E-05 52.4 8.9 33 515-553 79-112 (576)
277 PRK07340 ornithine cyclodeamin 86.4 1.9 4.1E-05 49.4 7.7 76 116-215 122-198 (304)
278 PRK09496 trkA potassium transp 86.2 1.7 3.7E-05 52.3 7.6 89 517-639 1-89 (453)
279 PF00070 Pyr_redox: Pyridine n 86.2 1.2 2.7E-05 40.1 4.9 54 121-186 1-54 (80)
280 PLN02545 3-hydroxybutyryl-CoA 86.2 3 6.4E-05 47.5 9.1 32 120-152 5-36 (295)
281 cd01075 NAD_bind_Leu_Phe_Val_D 86.1 0.67 1.4E-05 49.8 3.6 36 513-554 25-60 (200)
282 PRK03562 glutathione-regulated 86.1 2.3 4.9E-05 53.7 8.8 85 119-231 400-490 (621)
283 PRK08618 ornithine cyclodeamin 86.0 2.3 5E-05 49.2 8.2 144 442-626 49-203 (325)
284 cd01065 NAD_bind_Shikimate_DH 85.9 0.72 1.6E-05 46.8 3.6 36 514-554 17-52 (155)
285 cd01338 MDH_choloroplast_like 85.8 1.1 2.3E-05 51.9 5.3 74 120-214 3-87 (322)
286 PRK07502 cyclohexadienyl dehyd 85.8 2.8 6.1E-05 48.0 8.7 33 119-151 6-39 (307)
287 TIGR01915 npdG NADPH-dependent 85.7 5.6 0.00012 43.2 10.6 82 121-225 2-88 (219)
288 PF01210 NAD_Gly3P_dh_N: NAD-d 85.7 4.1 8.9E-05 41.9 9.0 32 121-153 1-32 (157)
289 PRK09242 tropinone reductase; 85.6 3.8 8.2E-05 45.0 9.4 63 116-198 6-69 (257)
290 PRK02472 murD UDP-N-acetylmura 85.6 3.3 7.1E-05 49.9 9.6 126 117-273 3-129 (447)
291 TIGR00518 alaDH alanine dehydr 85.6 1.7 3.8E-05 51.2 7.0 35 117-152 165-199 (370)
292 PRK11908 NAD-dependent epimera 85.5 3 6.5E-05 48.3 9.0 31 517-553 2-34 (347)
293 PRK04663 murD UDP-N-acetylmura 85.5 2.3 4.9E-05 51.3 8.1 124 116-273 3-129 (438)
294 cd05292 LDH_2 A subgroup of L- 85.5 2.7 5.8E-05 48.3 8.4 31 121-151 2-33 (308)
295 PRK06035 3-hydroxyacyl-CoA deh 85.5 3.5 7.7E-05 46.8 9.3 104 120-243 4-124 (291)
296 TIGR00465 ilvC ketol-acid redu 85.3 3.7 8E-05 47.3 9.3 33 117-150 1-33 (314)
297 PRK06522 2-dehydropantoate 2-r 85.3 3.4 7.4E-05 46.8 9.1 30 121-151 2-31 (304)
298 PRK04690 murD UDP-N-acetylmura 85.3 3 6.6E-05 50.7 9.1 92 117-237 6-98 (468)
299 PRK08293 3-hydroxybutyryl-CoA 85.2 6.3 0.00014 44.6 11.2 32 120-152 4-35 (287)
300 PLN02350 phosphogluconate dehy 85.2 5 0.00011 49.1 10.8 117 120-243 7-136 (493)
301 PRK06223 malate dehydrogenase; 85.1 4.3 9.3E-05 46.4 9.8 32 120-151 3-34 (307)
302 PRK02006 murD UDP-N-acetylmura 85.1 3.2 6.9E-05 50.9 9.3 95 117-237 5-102 (498)
303 PF10727 Rossmann-like: Rossma 85.1 2.4 5.2E-05 42.3 6.7 82 118-227 9-90 (127)
304 PF02826 2-Hacid_dh_C: D-isome 85.0 0.84 1.8E-05 48.0 3.7 41 112-153 29-69 (178)
305 PRK03659 glutathione-regulated 85.0 3.8 8.1E-05 51.6 10.0 85 119-231 400-490 (601)
306 PLN00016 RNA-binding protein; 85.0 4.1 8.9E-05 48.0 9.8 113 115-246 48-171 (378)
307 PRK12826 3-ketoacyl-(acyl-carr 85.0 1.8 3.9E-05 47.0 6.4 35 514-554 4-39 (251)
308 PRK05854 short chain dehydroge 84.9 3.8 8.2E-05 47.0 9.3 59 116-194 11-70 (313)
309 PF02558 ApbA: Ketopantoate re 84.8 2.6 5.7E-05 42.5 7.1 29 122-151 1-29 (151)
310 PRK07576 short chain dehydroge 84.8 1.8 4E-05 48.0 6.5 36 513-554 6-42 (264)
311 PRK07531 bifunctional 3-hydrox 84.7 4.4 9.4E-05 49.8 10.2 32 517-554 5-36 (495)
312 PRK06249 2-dehydropantoate 2-r 84.6 1.6 3.4E-05 50.2 5.9 34 119-153 5-38 (313)
313 PRK05867 short chain dehydroge 84.6 1.9 4E-05 47.4 6.4 33 514-552 7-40 (253)
314 PF00106 adh_short: short chai 84.5 1.4 3E-05 44.8 5.0 83 517-623 1-88 (167)
315 PRK14175 bifunctional 5,10-met 84.5 1.6 3.6E-05 49.4 5.9 34 513-552 155-189 (286)
316 PRK05708 2-dehydropantoate 2-r 84.5 0.8 1.7E-05 52.5 3.5 33 516-554 2-34 (305)
317 PF10727 Rossmann-like: Rossma 84.4 3.4 7.4E-05 41.2 7.4 26 515-540 9-34 (127)
318 PRK03369 murD UDP-N-acetylmura 84.4 3.5 7.5E-05 50.5 9.1 89 118-237 11-99 (488)
319 PRK11880 pyrroline-5-carboxyla 84.3 4.7 0.0001 45.0 9.5 32 120-151 3-36 (267)
320 PRK03803 murD UDP-N-acetylmura 84.3 3.6 7.7E-05 49.7 9.1 125 119-274 6-130 (448)
321 PLN02206 UDP-glucuronate decar 84.2 2.5 5.3E-05 51.1 7.7 33 515-553 118-151 (442)
322 PTZ00142 6-phosphogluconate de 84.2 2.2 4.8E-05 51.8 7.3 116 120-242 2-129 (470)
323 COG1893 ApbA Ketopantoate redu 84.2 3.2 6.9E-05 47.7 8.2 84 120-230 1-92 (307)
324 PRK08217 fabG 3-ketoacyl-(acyl 84.2 2.1 4.6E-05 46.5 6.5 34 514-553 3-37 (253)
325 PRK10537 voltage-gated potassi 84.2 2.9 6.3E-05 49.7 8.0 88 114-231 235-328 (393)
326 PRK07063 short chain dehydroge 84.1 3.7 8.1E-05 45.2 8.5 60 116-195 4-64 (260)
327 PF02719 Polysacc_synt_2: Poly 84.1 2.1 4.5E-05 48.6 6.5 33 122-154 1-34 (293)
328 PLN02240 UDP-glucose 4-epimera 84.1 6.2 0.00014 45.5 10.7 34 117-151 3-37 (352)
329 PLN02780 ketoreductase/ oxidor 84.0 3.2 6.8E-05 47.9 8.1 61 516-601 53-114 (320)
330 TIGR01771 L-LDH-NAD L-lactate 84.0 1.9 4.2E-05 49.3 6.3 68 124-214 1-73 (299)
331 PRK00094 gpsA NAD(P)H-dependen 83.9 5.9 0.00013 45.3 10.3 31 121-152 3-33 (325)
332 PRK07523 gluconate 5-dehydroge 83.9 2.7 5.9E-05 46.1 7.3 35 513-553 7-42 (255)
333 PRK07680 late competence prote 83.8 6.3 0.00014 44.3 10.3 78 121-225 2-82 (273)
334 cd01337 MDH_glyoxysomal_mitoch 83.8 2.3 4.9E-05 49.0 6.7 72 121-214 2-77 (310)
335 PRK15469 ghrA bifunctional gly 83.7 4.6 9.9E-05 46.6 9.2 42 109-151 126-167 (312)
336 PRK12921 2-dehydropantoate 2-r 83.5 3.3 7.1E-05 47.0 8.0 30 121-151 2-31 (305)
337 PRK09186 flagellin modificatio 83.5 2.8 6.1E-05 45.9 7.2 33 514-552 2-35 (256)
338 PRK03562 glutathione-regulated 83.5 0.99 2.2E-05 56.9 4.0 89 516-639 400-488 (621)
339 PRK07062 short chain dehydroge 83.5 5.2 0.00011 44.1 9.4 59 117-195 6-65 (265)
340 TIGR00872 gnd_rel 6-phosphoglu 83.4 1.2 2.5E-05 50.9 4.3 31 518-554 2-32 (298)
341 cd01339 LDH-like_MDH L-lactate 83.4 3.7 7.9E-05 46.9 8.3 31 122-152 1-31 (300)
342 PRK14619 NAD(P)H-dependent gly 83.4 4.3 9.4E-05 46.5 8.9 33 119-152 4-36 (308)
343 PF02737 3HCDH_N: 3-hydroxyacy 83.4 1.1 2.3E-05 47.5 3.6 33 518-556 1-33 (180)
344 PRK08291 ectoine utilization p 83.4 4.1 8.8E-05 47.3 8.7 75 119-215 132-207 (330)
345 PRK07478 short chain dehydroge 83.3 2.4 5.2E-05 46.5 6.6 34 514-553 4-38 (254)
346 PRK05442 malate dehydrogenase; 83.3 1.6 3.6E-05 50.5 5.4 74 120-214 5-89 (326)
347 PRK11790 D-3-phosphoglycerate 83.3 1.4 3E-05 52.8 4.9 35 513-553 148-182 (409)
348 cd00650 LDH_MDH_like NAD-depen 83.3 3.2 7E-05 46.4 7.6 72 122-214 1-79 (263)
349 COG1063 Tdh Threonine dehydrog 83.2 3 6.4E-05 48.8 7.5 97 518-644 171-267 (350)
350 PTZ00431 pyrroline carboxylate 83.1 2.8 6.2E-05 46.8 7.1 37 515-553 2-38 (260)
351 PF00106 adh_short: short chai 83.1 5.6 0.00012 40.3 8.8 59 120-197 1-60 (167)
352 KOG0069 Glyoxylate/hydroxypyru 83.1 0.86 1.9E-05 52.5 2.9 93 512-648 158-254 (336)
353 PRK09599 6-phosphogluconate de 83.1 1.6 3.5E-05 49.8 5.2 31 518-554 2-32 (301)
354 PRK06223 malate dehydrogenase; 83.1 3.3 7.2E-05 47.3 7.8 32 517-553 3-34 (307)
355 TIGR00873 gnd 6-phosphoglucona 83.0 2.9 6.4E-05 50.8 7.6 116 121-242 1-126 (467)
356 PRK09260 3-hydroxybutyryl-CoA 83.0 7.4 0.00016 44.1 10.5 33 120-153 2-34 (288)
357 PRK07679 pyrroline-5-carboxyla 83.0 6.4 0.00014 44.4 9.9 82 118-226 2-86 (279)
358 PRK05479 ketol-acid reductoiso 82.9 3.4 7.3E-05 47.9 7.7 36 114-150 12-47 (330)
359 PLN03209 translocon at the inn 82.9 6.7 0.00015 48.6 10.6 104 118-242 79-210 (576)
360 PRK07531 bifunctional 3-hydrox 82.8 6.7 0.00015 48.2 10.7 33 120-153 5-37 (495)
361 PTZ00431 pyrroline carboxylate 82.8 5.7 0.00012 44.4 9.3 74 118-226 2-78 (260)
362 PRK07417 arogenate dehydrogena 82.8 4.6 0.0001 45.6 8.7 30 121-151 2-31 (279)
363 PLN02253 xanthoxin dehydrogena 82.7 3 6.6E-05 46.5 7.2 35 513-553 15-50 (280)
364 PF04321 RmlD_sub_bind: RmlD s 82.7 3.7 8E-05 46.5 7.9 97 121-244 2-105 (286)
365 PRK11908 NAD-dependent epimera 82.7 8 0.00017 44.8 10.9 98 120-245 2-123 (347)
366 PLN02306 hydroxypyruvate reduc 82.7 1.4 3.1E-05 52.2 4.6 35 513-553 162-197 (386)
367 cd05197 GH4_glycoside_hydrolas 82.6 3.4 7.4E-05 49.7 7.8 108 121-249 2-116 (425)
368 KOG0024 Sorbitol dehydrogenase 82.6 3.4 7.4E-05 47.2 7.2 36 515-555 169-204 (354)
369 PRK05335 tRNA (uracil-5-)-meth 82.5 1.1 2.3E-05 53.6 3.5 34 516-555 2-35 (436)
370 PRK08339 short chain dehydroge 82.4 3.8 8.2E-05 45.6 7.7 34 514-553 6-40 (263)
371 PRK06928 pyrroline-5-carboxyla 82.3 6.8 0.00015 44.2 9.8 79 121-225 3-84 (277)
372 PRK12384 sorbitol-6-phosphate 82.2 4.3 9.3E-05 44.6 8.0 33 516-554 2-35 (259)
373 PRK06523 short chain dehydroge 82.0 2.7 5.8E-05 46.3 6.3 37 513-555 6-43 (260)
374 TIGR01035 hemA glutamyl-tRNA r 82.0 1.1 2.5E-05 53.6 3.6 36 513-553 177-212 (417)
375 PRK00048 dihydrodipicolinate r 81.9 6.4 0.00014 44.0 9.2 34 120-153 2-37 (257)
376 PRK07831 short chain dehydroge 81.8 6.5 0.00014 43.4 9.3 35 116-151 14-50 (262)
377 KOG0069 Glyoxylate/hydroxypyru 81.6 5.5 0.00012 46.1 8.6 86 114-230 157-244 (336)
378 PRK06476 pyrroline-5-carboxyla 81.6 6.2 0.00013 43.9 9.0 71 121-218 2-74 (258)
379 PRK07576 short chain dehydroge 81.6 4.7 0.0001 44.7 8.1 38 113-151 3-41 (264)
380 PRK00421 murC UDP-N-acetylmura 81.5 3.6 7.8E-05 49.9 7.7 121 118-273 6-128 (461)
381 COG1063 Tdh Threonine dehydrog 81.5 4.3 9.3E-05 47.5 8.0 89 119-230 169-263 (350)
382 TIGR01772 MDH_euk_gproteo mala 81.5 2.4 5.2E-05 48.9 5.7 70 121-212 1-74 (312)
383 PTZ00117 malate dehydrogenase; 81.5 1.3 2.8E-05 51.2 3.6 35 515-554 4-38 (319)
384 cd00704 MDH Malate dehydrogena 81.5 1.5 3.3E-05 50.7 4.2 33 120-152 1-40 (323)
385 cd01076 NAD_bind_1_Glu_DH NAD( 81.4 6.3 0.00014 43.3 8.8 38 115-152 27-64 (227)
386 PRK14620 NAD(P)H-dependent gly 81.4 9.6 0.00021 44.0 10.8 31 121-152 2-32 (326)
387 cd05211 NAD_bind_Glu_Leu_Phe_V 81.4 1.9 4.1E-05 47.0 4.7 38 116-153 20-57 (217)
388 PRK15409 bifunctional glyoxyla 81.3 2.2 4.7E-05 49.4 5.4 34 513-552 142-176 (323)
389 PRK13403 ketol-acid reductoiso 81.2 1.3 2.9E-05 50.8 3.5 36 511-552 11-46 (335)
390 PF02558 ApbA: Ketopantoate re 81.1 1.4 3.1E-05 44.5 3.4 29 519-553 1-29 (151)
391 PRK07792 fabG 3-ketoacyl-(acyl 81.0 3 6.5E-05 47.6 6.4 35 513-553 9-44 (306)
392 PLN00106 malate dehydrogenase 81.0 5.4 0.00012 46.2 8.4 74 118-212 17-93 (323)
393 COG1250 FadB 3-hydroxyacyl-CoA 81.0 3 6.5E-05 47.8 6.2 107 517-651 4-121 (307)
394 TIGR00065 ftsZ cell division p 80.9 7.3 0.00016 45.6 9.5 42 112-153 10-53 (349)
395 TIGR03589 PseB UDP-N-acetylglu 80.8 10 0.00022 43.6 10.8 36 117-152 2-39 (324)
396 PRK14618 NAD(P)H-dependent gly 80.8 6.7 0.00014 45.3 9.2 92 121-240 6-105 (328)
397 cd05211 NAD_bind_Glu_Leu_Phe_V 80.7 1.5 3.3E-05 47.8 3.6 38 513-555 20-57 (217)
398 TIGR01763 MalateDH_bact malate 80.6 12 0.00025 43.1 11.0 32 120-151 2-33 (305)
399 PRK07231 fabG 3-ketoacyl-(acyl 80.6 6.2 0.00013 42.9 8.5 35 117-152 3-38 (251)
400 TIGR00936 ahcY adenosylhomocys 80.5 5.5 0.00012 47.5 8.5 66 85-153 158-228 (406)
401 COG1091 RfbD dTDP-4-dehydrorha 80.5 8 0.00017 43.8 9.3 90 121-240 2-100 (281)
402 TIGR02992 ectoine_eutC ectoine 80.5 4.6 0.0001 46.7 7.8 75 516-625 129-204 (326)
403 PRK12939 short chain dehydroge 80.5 3.4 7.5E-05 44.8 6.4 33 514-552 5-38 (250)
404 PRK03806 murD UDP-N-acetylmura 80.4 6.1 0.00013 47.5 9.1 123 117-273 4-126 (438)
405 cd05298 GH4_GlvA_pagL_like Gly 80.3 3.4 7.5E-05 49.7 6.8 106 121-248 2-115 (437)
406 PRK15181 Vi polysaccharide bio 80.3 3.5 7.5E-05 48.0 6.7 35 116-151 12-47 (348)
407 PRK06522 2-dehydropantoate 2-r 80.2 1.6 3.4E-05 49.5 3.8 32 517-554 1-32 (304)
408 PLN02427 UDP-apiose/xylose syn 80.2 3.3 7.2E-05 48.7 6.6 35 513-553 11-47 (386)
409 PRK06125 short chain dehydroge 80.1 4.8 0.0001 44.3 7.5 34 514-553 5-39 (259)
410 PRK14982 acyl-ACP reductase; P 80.1 1.4 3E-05 51.2 3.3 36 513-553 152-189 (340)
411 COG1893 ApbA Ketopantoate redu 80.1 5.5 0.00012 45.8 8.1 23 517-539 1-23 (307)
412 PRK12550 shikimate 5-dehydroge 80.1 2.3 5E-05 48.0 4.9 32 120-151 123-154 (272)
413 PLN03129 NADP-dependent malic 80.1 0.71 1.5E-05 56.6 0.9 108 512-646 317-434 (581)
414 PRK07634 pyrroline-5-carboxyla 80.0 7 0.00015 42.9 8.7 26 515-540 3-28 (245)
415 PRK06249 2-dehydropantoate 2-r 79.9 1.5 3.3E-05 50.3 3.6 34 516-555 5-38 (313)
416 PF13460 NAD_binding_10: NADH( 79.9 6.9 0.00015 40.5 8.3 86 519-642 1-91 (183)
417 PRK13304 L-aspartate dehydroge 79.9 4.8 0.0001 45.2 7.4 86 517-644 2-89 (265)
418 PRK05875 short chain dehydroge 79.8 4.9 0.00011 44.7 7.5 34 514-553 5-39 (276)
419 PRK12491 pyrroline-5-carboxyla 79.8 10 0.00023 42.7 10.1 80 119-226 2-84 (272)
420 PRK09880 L-idonate 5-dehydroge 79.8 9.3 0.0002 44.2 10.1 34 118-151 169-202 (343)
421 PRK05565 fabG 3-ketoacyl-(acyl 79.7 5.5 0.00012 43.1 7.7 33 514-552 3-37 (247)
422 PRK08655 prephenate dehydrogen 79.7 4.3 9.3E-05 49.0 7.4 90 517-648 1-93 (437)
423 PRK06141 ornithine cyclodeamin 79.6 5.2 0.00011 46.1 7.8 137 442-625 48-199 (314)
424 PRK12827 short chain dehydroge 79.6 4.4 9.6E-05 43.9 6.9 33 514-552 4-37 (249)
425 PRK10537 voltage-gated potassi 79.6 2.7 5.9E-05 49.9 5.6 89 515-640 239-327 (393)
426 PF02719 Polysacc_synt_2: Poly 79.6 0.8 1.7E-05 51.9 1.1 41 519-564 1-42 (293)
427 PF02056 Glyco_hydro_4: Family 79.6 4.6 9.9E-05 42.9 6.7 109 518-653 1-113 (183)
428 PRK08251 short chain dehydroge 79.6 8.7 0.00019 41.8 9.2 60 119-198 2-62 (248)
429 PRK12826 3-ketoacyl-(acyl-carr 79.6 5.9 0.00013 43.0 7.9 36 116-152 3-39 (251)
430 PRK06138 short chain dehydroge 79.6 5.5 0.00012 43.4 7.7 34 514-553 3-37 (252)
431 PRK03659 glutathione-regulated 79.5 3.7 8.1E-05 51.6 7.1 89 516-639 400-488 (601)
432 PRK12367 short chain dehydroge 79.5 2.1 4.5E-05 47.4 4.3 40 509-554 7-47 (245)
433 PRK06139 short chain dehydroge 79.5 3.2 7E-05 48.1 6.1 35 513-553 4-39 (330)
434 PRK07067 sorbitol dehydrogenas 79.4 2.7 5.8E-05 46.2 5.2 36 514-555 4-40 (257)
435 PRK00811 spermidine synthase; 79.4 4.9 0.00011 45.6 7.3 92 97-212 57-157 (283)
436 TIGR01202 bchC 2-desacetyl-2-h 79.4 5.9 0.00013 45.2 8.1 82 118-230 144-225 (308)
437 TIGR01181 dTDP_gluc_dehyt dTDP 79.3 9.5 0.00021 42.9 9.8 31 121-151 1-33 (317)
438 cd01339 LDH-like_MDH L-lactate 79.3 4.8 0.0001 45.9 7.3 31 519-554 1-31 (300)
439 TIGR03466 HpnA hopanoid-associ 79.1 4.4 9.5E-05 46.0 7.0 31 518-554 2-33 (328)
440 PRK11730 fadB multifunctional 79.1 2.2 4.9E-05 54.6 5.0 169 517-711 314-491 (715)
441 PRK12480 D-lactate dehydrogena 79.0 1.7 3.8E-05 50.4 3.7 36 513-554 143-178 (330)
442 PRK05866 short chain dehydroge 79.0 3.8 8.3E-05 46.5 6.4 34 514-553 38-72 (293)
443 PRK15059 tartronate semialdehy 79.0 5.6 0.00012 45.3 7.7 108 121-242 2-121 (292)
444 TIGR02853 spore_dpaA dipicolin 79.0 1.6 3.6E-05 49.5 3.4 35 513-553 148-182 (287)
445 PRK08229 2-dehydropantoate 2-r 79.0 12 0.00027 43.2 10.7 94 121-243 4-110 (341)
446 PRK07340 ornithine cyclodeamin 79.0 3.6 7.8E-05 47.2 6.2 75 514-625 123-198 (304)
447 PRK07814 short chain dehydroge 78.9 4.2 9.2E-05 45.0 6.6 35 514-554 8-43 (263)
448 PRK06172 short chain dehydroge 78.9 4.4 9.5E-05 44.4 6.6 34 514-553 5-39 (253)
449 PRK06720 hypothetical protein; 78.8 5 0.00011 41.9 6.7 35 514-554 14-49 (169)
450 TIGR03589 PseB UDP-N-acetylglu 78.8 5.2 0.00011 46.0 7.5 37 514-554 2-39 (324)
451 PLN02688 pyrroline-5-carboxyla 78.8 9.2 0.0002 42.6 9.3 24 517-540 1-24 (266)
452 PRK00676 hemA glutamyl-tRNA re 78.7 1.7 3.6E-05 50.5 3.3 35 513-552 171-205 (338)
453 PF03949 Malic_M: Malic enzyme 78.5 2.7 5.9E-05 46.8 4.7 39 115-153 21-69 (255)
454 PRK06129 3-hydroxyacyl-CoA deh 78.5 9 0.00019 43.9 9.2 104 120-243 3-121 (308)
455 PRK12829 short chain dehydroge 78.4 5 0.00011 44.0 6.9 37 511-553 6-43 (264)
456 PLN02166 dTDP-glucose 4,6-dehy 78.4 4.9 0.00011 48.5 7.4 33 516-554 120-153 (436)
457 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.3 8.1 0.00018 47.5 9.3 33 119-152 5-37 (503)
458 PF01408 GFO_IDH_MocA: Oxidore 78.3 16 0.00035 35.0 9.7 32 121-152 2-35 (120)
459 PRK13529 malate dehydrogenase; 78.3 1.1 2.4E-05 54.7 1.8 117 512-647 291-416 (563)
460 PRK13301 putative L-aspartate 78.3 3.1 6.8E-05 46.5 5.2 116 120-245 3-129 (267)
461 TIGR01181 dTDP_gluc_dehyt dTDP 78.3 7.3 0.00016 43.8 8.4 32 518-553 1-33 (317)
462 PRK05875 short chain dehydroge 78.1 9.7 0.00021 42.3 9.2 35 116-151 4-39 (276)
463 PRK12550 shikimate 5-dehydroge 78.0 2.2 4.7E-05 48.2 3.9 32 517-553 123-154 (272)
464 PRK00045 hemA glutamyl-tRNA re 78.0 1.8 3.9E-05 52.0 3.5 35 514-553 180-214 (423)
465 TIGR01850 argC N-acetyl-gamma- 78.0 5.1 0.00011 46.8 7.1 98 517-648 1-100 (346)
466 PRK12769 putative oxidoreducta 77.9 5.7 0.00012 50.5 8.1 34 515-554 326-359 (654)
467 TIGR01327 PGDH D-3-phosphoglyc 77.9 2.6 5.6E-05 52.1 4.9 35 513-553 135-169 (525)
468 PRK06181 short chain dehydroge 77.8 5.2 0.00011 44.0 6.9 31 517-553 2-33 (263)
469 PRK11154 fadJ multifunctional 77.8 2.5 5.3E-05 54.2 4.8 172 517-711 310-488 (708)
470 PRK09330 cell division protein 77.7 8.7 0.00019 45.5 8.9 101 117-237 11-132 (384)
471 PRK07453 protochlorophyllide o 77.6 4.9 0.00011 46.1 6.8 33 515-553 5-38 (322)
472 COG1486 CelF Alpha-galactosida 77.6 5.7 0.00012 47.5 7.3 107 118-247 2-117 (442)
473 PRK06940 short chain dehydroge 77.6 4.7 0.0001 45.2 6.5 31 516-553 2-32 (275)
474 PRK08291 ectoine utilization p 77.6 6.5 0.00014 45.6 7.8 75 516-625 132-207 (330)
475 PRK12859 3-ketoacyl-(acyl-carr 77.5 5.7 0.00012 43.8 7.1 34 513-552 3-39 (256)
476 TIGR02853 spore_dpaA dipicolin 77.5 2.8 6.1E-05 47.7 4.7 35 116-151 148-182 (287)
477 PRK14192 bifunctional 5,10-met 77.4 4 8.6E-05 46.4 5.8 35 116-151 156-191 (283)
478 TIGR00137 gid_trmFO tRNA:m(5)U 77.4 2.1 4.5E-05 51.4 3.7 32 517-554 1-32 (433)
479 PRK10669 putative cation:proto 77.3 9.3 0.0002 47.6 9.6 33 119-152 417-449 (558)
480 PRK11199 tyrA bifunctional cho 77.2 5.9 0.00013 46.8 7.4 76 517-648 99-176 (374)
481 PRK00676 hemA glutamyl-tRNA re 77.2 2.9 6.3E-05 48.5 4.7 38 116-153 171-208 (338)
482 TIGR02632 RhaD_aldol-ADH rhamn 77.2 5 0.00011 51.2 7.3 34 514-553 412-446 (676)
483 PRK14188 bifunctional 5,10-met 77.1 5.5 0.00012 45.5 6.9 77 513-649 155-232 (296)
484 PLN02896 cinnamyl-alcohol dehy 77.1 21 0.00046 41.4 12.0 33 118-151 9-42 (353)
485 PRK13018 cell division protein 77.1 14 0.00031 43.6 10.4 107 116-241 25-151 (378)
486 TIGR02622 CDP_4_6_dhtase CDP-g 77.0 6.3 0.00014 45.7 7.6 35 117-152 2-37 (349)
487 PRK12744 short chain dehydroge 77.0 5.7 0.00012 43.7 6.9 27 514-540 6-33 (257)
488 PLN02350 phosphogluconate dehy 77.0 8.1 0.00018 47.3 8.6 123 517-651 7-136 (493)
489 cd00762 NAD_bind_malic_enz NAD 76.9 2.1 4.4E-05 47.7 3.2 39 115-153 21-69 (254)
490 PRK05872 short chain dehydroge 76.9 6.8 0.00015 44.4 7.6 34 514-553 7-41 (296)
491 PF01564 Spermine_synth: Sperm 76.9 3.1 6.8E-05 46.2 4.7 56 95-153 55-110 (246)
492 TIGR03206 benzo_BadH 2-hydroxy 76.9 5.1 0.00011 43.6 6.4 35 514-554 1-36 (250)
493 PLN02572 UDP-sulfoquinovose sy 76.8 5.5 0.00012 48.1 7.2 32 119-151 47-79 (442)
494 TIGR01202 bchC 2-desacetyl-2-h 76.8 5.8 0.00013 45.2 7.1 33 516-553 145-177 (308)
495 PRK07097 gluconate 5-dehydroge 76.7 5.1 0.00011 44.3 6.5 34 513-552 7-41 (265)
496 TIGR00036 dapB dihydrodipicoli 76.7 5.7 0.00012 44.7 6.8 97 518-651 3-102 (266)
497 PRK15076 alpha-galactosidase; 76.7 6.7 0.00015 47.3 7.8 109 120-249 2-120 (431)
498 PRK14982 acyl-ACP reductase; P 76.6 2.9 6.4E-05 48.6 4.6 36 116-151 152-189 (340)
499 PLN02688 pyrroline-5-carboxyla 76.6 14 0.0003 41.2 9.8 76 121-225 2-81 (266)
500 cd00762 NAD_bind_malic_enz NAD 76.5 1.8 4E-05 48.0 2.7 45 512-556 21-70 (254)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-264 Score=2256.39 Aligned_cols=1005 Identities=58% Similarity=0.999 Sum_probs=974.9
Q ss_pred cCCCCCCCCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccC
Q 001301 87 MGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFS 166 (1104)
Q Consensus 87 ~~~~~~~~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~ 166 (1104)
|..++++..++|+++||||+|++|.++|+||..++|||+||+|||.||||||+|+||+++||+|...+.++||++|||++
T Consensus 5 ~~~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~ 84 (1013)
T KOG2012|consen 5 MMDGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLS 84 (1013)
T ss_pred ccccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeee
Confidence 44455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEE
Q 001301 167 EDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 167 ~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 246 (1104)
++|||+|||+++.++|++||++|.|.++++.++++++++|+|||+|+.+.+.+.+||++||++| |.||.+.++|++|+
T Consensus 85 E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGLfg~ 162 (1013)
T KOG2012|consen 85 EEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGLFGQ 162 (1013)
T ss_pred HHhcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEeecCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCccccc
Q 001301 247 IFCDFGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSI 326 (1104)
Q Consensus 247 vf~d~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i 326 (1104)
+|||||++|+|.|++|++|.+++|.+|++++|++|+|+++.||+|+|||+|+|+||+||+++|+|+|++|++++||+|+|
T Consensus 163 lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~I 242 (1013)
T KOG2012|consen 163 LFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSI 242 (1013)
T ss_pred hhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHH
Q 001301 327 DEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDA 406 (1104)
Q Consensus 327 ~~dt~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da 406 (1104)
+||+.|+.|.+||+++|||+|++++|+||+++|.+| +++.+|++|++|+++||++|+||++|.+.|||+|.+++++|+
T Consensus 243 -gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA 320 (1013)
T KOG2012|consen 243 -GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDA 320 (1013)
T ss_pred -ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhH
Confidence 579999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCCCC-
Q 001301 407 QKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE- 485 (1104)
Q Consensus 407 ~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp~~- 485 (1104)
++|+.++..+.+..+ ...++++++|++|++.+++.|.||+|++||+|||||+|+|||||+||.||||||++|+||++
T Consensus 321 ~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~ 398 (1013)
T KOG2012|consen 321 EELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDN 398 (1013)
T ss_pred HHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcC
Confidence 999999999988655 24689999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccc
Q 001301 486 -PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 564 (1104)
Q Consensus 486 -~~~~~~~~~~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQ 564 (1104)
++++++++|.++|||.||++||...|+||.+.++|+|||||||||++||||+|||+||..|+|+|+|||.||.||||||
T Consensus 399 ~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQ 478 (1013)
T KOG2012|consen 399 LPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQ 478 (1013)
T ss_pred CCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccce
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 565 FLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 565 fLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
||||.+|||++||++||++++.|||+++|+++..+++++||+||+++||++.|+|++||||+.||+||+++|+.+.+||+
T Consensus 479 FLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLL 558 (1013)
T KOG2012|consen 479 FLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLL 558 (1013)
T ss_pred eeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccceEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHH
Q 001301 645 ESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASA 724 (1104)
Q Consensus 645 ~~g~~G~~G~v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~ 724 (1104)
++||+|++|++|+++|++||+|++++||||+++|+||+++||+.|+|||+|||+.||++|.+.++++|.||++|..+...
T Consensus 559 ESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~s 638 (1013)
T KOG2012|consen 559 ESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETS 638 (1013)
T ss_pred hccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977778
Q ss_pred hhhcCchhHHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccc
Q 001301 725 MKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFS 804 (1104)
Q Consensus 725 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd 804 (1104)
++..++.+..+.|+.|.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|++|++|+||||||||||+|++||
T Consensus 639 l~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd 717 (1013)
T KOG2012|consen 639 LKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFD 717 (1013)
T ss_pred HhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeec
Confidence 888888999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHH
Q 001301 805 VDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQ 884 (1104)
Q Consensus 805 ~~~~~h~~fv~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 884 (1104)
.+|++|+.||++||+|||++|||+.. .+...++.++..+++|+|+|+++++|.+++.+...++.+.|+...+++|..
T Consensus 718 ~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~ 794 (1013)
T KOG2012|consen 718 VNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNK 794 (1013)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhh
Confidence 99999999999999999999999984 456689999999999999999999999998887777778888889999999
Q ss_pred HHHHhhhcCCCCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHH
Q 001301 885 KLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 964 (1104)
Q Consensus 885 ~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl 964 (1104)
.+..+.. ..++++.|++||||||+|+|||||+|||||||.||+||++||+++|+||||||||||||||+|+||+||||
T Consensus 795 ~l~~~~~--~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LEl 872 (1013)
T KOG2012|consen 795 ALPSPSV--LPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLEL 872 (1013)
T ss_pred ccccccc--CCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhh
Confidence 8887765 45589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccccccCcccccCCCCCCccc-cCCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCC
Q 001301 965 YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFK-HQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGS 1042 (1104)
Q Consensus 965 ~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~-~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~ 1042 (1104)
||++.|+.+++.|||+|+|||+|+|.++||.|+++.. +.+.+||+||||++.|++||++||++++++ |++++||++|+
T Consensus 873 yKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~ 952 (1013)
T KOG2012|consen 873 YKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGV 952 (1013)
T ss_pred hhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEeccc
Confidence 9999998899999999999999999999999977766 456699999999999999999999999988 99999999999
Q ss_pred ceeeccCCcchhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEEEe
Q 001301 1043 CLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 1103 (1104)
Q Consensus 1043 ~~LY~~~~~~~~~~l~~~l~~l~~~v~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v~~~~ 1103 (1104)
+|||++||+++++||+++++||++.++++++|+++++|+|+++|+|++|+|+++|+|||+|
T Consensus 953 ~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~y~f 1013 (1013)
T KOG2012|consen 953 SLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVRYYF 1013 (1013)
T ss_pred eeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.7e-233 Score=2163.56 Aligned_cols=1005 Identities=51% Similarity=0.878 Sum_probs=961.1
Q ss_pred chhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHH
Q 001301 96 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 175 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 175 (1104)
++|+++|||||++||.++|+||++++|||+|+||||+|+||||+|+|||+|+|+|++.|+.+||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCce
Q 001301 176 LASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEF 255 (1104)
Q Consensus 176 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f 255 (1104)
++++++|++|||+|+|+++...++++++++||+||+|.++.+.+..||++||++++|||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred EEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccc
Q 001301 256 TVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSA 335 (1104)
Q Consensus 256 ~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~ 335 (1104)
.|.|.+|+.|.++.|.+|+++++++++++++.+|++++||+|+|+||+||+++|+++|++|++.++|+|.| +||+.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred cccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 001301 336 YEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTN 415 (1104)
Q Consensus 336 y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~~ia~~ 415 (1104)
|.+||+++|+|+|++++|+||+++|..| +++++||+|++|++++|++|+||++|.++|||+|.+++++|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCCCC-CCCCCCCCC
Q 001301 416 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE-PLDPRDLQP 494 (1104)
Q Consensus 416 i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp~~-~~~~~~~~~ 494 (1104)
++++.+.. .+.+++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. .+..+++.+
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 99876532 3569999999999999999999999999999999999999999999999999999999974 344457778
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
.++|||||+++||.++|++|++++|+||||||||||++|+||++||+|+++|+|+|+|+|+||.|||||||||+.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+||++|+++++++||+++|+++..++.++++++|+++||+++|+||+|+||+++|+|++++|+.+++|+|++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHH
Q 001301 655 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQAR 734 (1104)
Q Consensus 655 v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 734 (1104)
+++++|++|+||+|+++|+++++|+||+++||+.++|||+|||++|+++|++.|+++|+|+++|.+|.+.+......+..
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777778
Q ss_pred HhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHH
Q 001301 735 DNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFL 814 (1104)
Q Consensus 735 ~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv 814 (1104)
+.|+.+++.|...+|.+|+|||+|||.+|+++|+++|+|||++||+|++|++|+||||||||+|+||+||++|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCC
Q 001301 815 MAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLP 894 (1104)
Q Consensus 815 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 894 (1104)
.++|+|||++|||+.+.++.+.+.+.++++++.+|+|.|+.+.++..+|++.+.+....++.+.++.|.++|...... .
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 796 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEAT-K 796 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccc-c
Confidence 999999999999998755555688999999999999999999999998876554433334566778888877665431 1
Q ss_pred CCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCc
Q 001301 895 TGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 974 (1104)
Q Consensus 895 ~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 974 (1104)
.+++++|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||||||+||++++.+++
T Consensus 797 ~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i 876 (1008)
T TIGR01408 797 SDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKF 876 (1008)
T ss_pred CCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccH
Confidence 23789999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ccccccccccccCcccccCCCCCCccccCCcce-eEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeeccCCcc
Q 001301 975 EDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPR 1052 (1104)
Q Consensus 975 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~~~~ 1052 (1104)
+.|||+|+|||+|+|.|+||.||++.++.+..| |+||||++.+++||++|+++|+++ |+++.||++|++|||++|+++
T Consensus 877 ~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 877 EVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred HHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccchh
Confidence 999999999999999999999999999888899 999999999999999999999999 999999999999999999988
Q ss_pred hhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEEEeC
Q 001301 1053 HKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS 1104 (1104)
Q Consensus 1053 ~~~~l~~~l~~l~~~v~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v~~~~~ 1104 (1104)
+++||+++|+||+++++++++|++++||+|+++|+|++|+||++|+|+|+||
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~~~~ 1008 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRIYFS 1008 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEEEeC
Confidence 8999999999999999999999999999999999999999999999999986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=8.2e-120 Score=1042.28 Aligned_cols=430 Identities=59% Similarity=1.061 Sum_probs=413.6
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||+||||||||||++|+||++||++|++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCCcccccCcCCCCCCCCC
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 677 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 677 (1104)
.+++++++++|+++||+++|+||+|+||+++|++|+++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccchHHHHH
Q 001301 678 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 757 (1104)
Q Consensus 678 p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~ 757 (1104)
|+||+++||+.++|||+|||++|+++|+..++++|+|+ |+||++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999887765433 679999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 001301 758 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 837 (1104)
Q Consensus 758 ~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~~a~l~a~~~~i~~~~~~~~~~ 837 (1104)
||+.+|+++|+++|+|||++||+|+++++|++||||+||+|+|++||++|+.|+.||.++|+|+|++||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred HHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceecccCCCCchhHHH
Q 001301 838 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 917 (1104)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI 917 (1104)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCcccccccccccccCcccccCCCCC
Q 001301 918 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 997 (1104)
Q Consensus 918 ~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 997 (1104)
+|||||||+||+|+++||+++|+||||||||||||||+||||+|+|+||++++..+++.|||+|+|||+|+|.|+||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred Ccccc-CCcceeEEeEEEeCCCCcHHHHH-HHHHHc-CCceeeeecCCceeeccCCc--chhhcc
Q 001301 998 KVFKH-QDMSWTVWDRWILRDNPTLRQLL-QWLQDK-GLNAYSISYGSCLLFNSMFP--RHKERM 1057 (1104)
Q Consensus 998 ~~~~~-~~~~~t~wd~~~v~~~~TL~~li-~~~~~~-~l~~~~i~~g~~~LY~~~~~--~~~~~l 1057 (1104)
++.++ .+.+||+||||++.+++||++|+ ++|+++ |+++.||++|++|||++||+ ++++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 98887 78899999999999999999999 999999 99999999999999999986 345553
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-79 Score=676.91 Aligned_cols=471 Identities=31% Similarity=0.485 Sum_probs=342.1
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhC
Q 001301 509 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN 588 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~n 588 (1104)
+.++.+.++|||||||||||||++|+||++|+ ++|+|||.|+|++||||||||||.+|||++||.+|++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCCcccccCc
Q 001301 589 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 668 (1104)
Q Consensus 589 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~~t~~y~~ 668 (1104)
|++++.+|...+.+. -|+.+||++||+|++||||..||+|||++|...++|||+|||.|+.||+++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999998854 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCChhhHHHHHH-HHhhhhhccChhh-Hhhhc-CCcHHHHHH-hhhcCc-hhHHHhHHHHHHH
Q 001301 669 SRDPPEKQAPMCTVHSFPHNIDHCLTWAR-SEFEGLLEKTPAE-VNAYL-TSPTEYASA-MKNAGD-AQARDNLDRVLEC 743 (1104)
Q Consensus 669 ~~~p~~~~~p~Ct~~~fP~~~~hci~wAr-~~F~~~f~~~~~~-~~~~l-~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~ 743 (1104)
...|..+++|+||+|+.|+.++|||.||| .+|.++|+..... ..... .||..-.+. +..... ....+..|+ ++
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er-~~- 234 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKER-RE- 234 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHH-HH-
Confidence 99999999999999999999999999999 5799999873321 11111 122211111 000000 000111111 10
Q ss_pred hhhhcccchHHHHHHH-------HHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHH
Q 001301 744 LDKERCETFQDCITWA-------RLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMA 816 (1104)
Q Consensus 744 l~~~~~~~~~~ci~~a-------~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~ 816 (1104)
.-++|. ..+|.++|.++|..|+. .+.-|.. +++|.||.|...-+.-
T Consensus 235 ----------~i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~~------ 287 (603)
T KOG2013|consen 235 ----------SIVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVISTS------ 287 (603)
T ss_pred ----------HHHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCCc------
Confidence 112222 35788999999999996 4667986 6679999876431110
Q ss_pred HHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcCh-HHHHHHHHHHHHHhhhcCCC
Q 001301 817 ASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDD-AVVINELLQKLEKCQKQLPT 895 (1104)
Q Consensus 817 ~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 895 (1104)
.+ .+..+++.+.-+ ..+ +...+. ++. ...+...++.|. ...+.
T Consensus 288 ----------~~---------t~ns~~q~~~~a----~~~-----~~~v~~-----v~~~~~vf~~~i~~l~---~~~~~ 331 (603)
T KOG2013|consen 288 ----------LE---------TINSIVQSITSA----QLN-----DQNVWT-----VDEGAVVFRLSIQALD---LRCPK 331 (603)
T ss_pred ----------cc---------cccchhhhcccc----ccC-----Ccceee-----eccccHHHHHHHHHhc---ccCCc
Confidence 00 000111100000 000 000010 111 112222222221 11111
Q ss_pred CCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCcc
Q 001301 896 GYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 975 (1104)
Q Consensus 896 ~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~ 975 (1104)
....-.+.|||||.+ .|+||+||||+||+.|+||..+.|++|.|||+||||||||||+|||++|+|.+|+|++ ++.
T Consensus 332 ~~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~ 407 (603)
T KOG2013|consen 332 ESDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFD 407 (603)
T ss_pred cCCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chh
Confidence 112334899999987 8999999999999999999999999999999999999999999999999999999987 477
Q ss_pred cccccccccccC-------cccccCCCCCCccccCCcceeEEeEEEeC-CCCcHHHHHHHH-HHc-CCceeeee-cCCce
Q 001301 976 DYRNTFANLALP-------LFSMAEPVPPKVFKHQDMSWTVWDRWILR-DNPTLRQLLQWL-QDK-GLNAYSIS-YGSCL 1044 (1104)
Q Consensus 976 ~~rn~f~nla~p-------~~~~~eP~~~~~~~~~~~~~t~wd~~~v~-~~~TL~~li~~~-~~~-~l~~~~i~-~g~~~ 1044 (1104)
.++++|++-... .+.+.+|+|.+..+.. +. -.+.+. ..+||..|.|.+ +.+ ++ .+.+| ....+
T Consensus 408 ~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~----~~-~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~L 481 (603)
T KOG2013|consen 408 DCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSE----VP-LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDL 481 (603)
T ss_pred cceeeEEccCCCccceeecccccCCCCCCCccccc----cc-eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhh
Confidence 888888753221 2234455555543321 11 223443 378999999986 555 77 44443 22345
Q ss_pred eeccCCcchhhcccCcHHHHH
Q 001301 1045 LFNSMFPRHKERMDKKVVDLV 1065 (1104)
Q Consensus 1045 LY~~~~~~~~~~l~~~l~~l~ 1065 (1104)
+|+. ..+++++|+|+||-
T Consensus 482 i~~~---d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 482 IDDM---DFEDNLDKTLSELG 499 (603)
T ss_pred cccc---cchhhhhhhHHhhC
Confidence 5553 45689999999993
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6.8e-75 Score=648.13 Aligned_cols=305 Identities=40% Similarity=0.656 Sum_probs=281.7
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||+||||||+|||++||||++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCCcccccCcCCCCCCCCC
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 677 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 677 (1104)
.++.+. .++.+||+++|+||+|+||.++|+++|++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988752 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccchHHHHH
Q 001301 678 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 757 (1104)
Q Consensus 678 p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~ 757 (1104)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 001301 758 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 837 (1104)
Q Consensus 758 ~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~~a~l~a~~~~i~~~~~~~~~~ 837 (1104)
+|+++|+++|+||++. ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5788999999999974 78999977 899987642
Q ss_pred HHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceecccCCCCchhHHH
Q 001301 838 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 917 (1104)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI 917 (1104)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 248999998 99999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCccccccccccccc----CcccccC
Q 001301 918 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLAL----PLFSMAE 993 (1104)
Q Consensus 918 ~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~----p~~~~~e 993 (1104)
+|+|||||+||+||..|++++|+||||||||||||||+||||+++|++|++.+. ++.|||+|+|+.- .++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999984 6899999998753 3456666
Q ss_pred CCCCCccc
Q 001301 994 PVPPKVFK 1001 (1104)
Q Consensus 994 P~~~~~~~ 1001 (1104)
|.+|...+
T Consensus 302 ~~~~n~~c 309 (312)
T cd01489 302 LDPPNPNC 309 (312)
T ss_pred CCCcCCCC
Confidence 66666543
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=7.3e-72 Score=616.72 Aligned_cols=285 Identities=59% Similarity=0.972 Sum_probs=279.8
Q ss_pred HHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHH
Q 001301 101 LHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQ 180 (1104)
Q Consensus 101 ~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~ 180 (1104)
+|||||++||.++|+||++++|||+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|||++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecC
Q 001301 181 KLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDV 260 (1104)
Q Consensus 181 ~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~ 260 (1104)
+|+++||+|+|++++..++++++.+||+||+|.++.+.+.++|++||+++ +|||.+++.|++|++|+|||++|.|+|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999988889999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCC
Q 001301 261 DGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGG 340 (1104)
Q Consensus 261 ~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg 340 (1104)
+|++|.+++|.+|+++.+++|+++++.+|+++|||+|+|+||+||+++|+++|++|++++||+|+| +||+.|++|++||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 001301 341 IVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNL 420 (1104)
Q Consensus 341 ~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~ 420 (1104)
+++|||
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999998
Q ss_pred CCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCCCC
Q 001301 421 ADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE 485 (1104)
Q Consensus 421 ~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp~~ 485 (1104)
++||||++||++||||||+|||||+||+||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 789999999999999999999999999999999999999953
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=7.1e-63 Score=532.89 Aligned_cols=175 Identities=48% Similarity=0.816 Sum_probs=168.1
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||+|||+||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCCcccccCcCCCCCCCCC
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 677 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 677 (1104)
.++.++ ..++++|++++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998653 336678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHH
Q 001301 678 PMCTVHSFPHNIDHCLTWARSE 699 (1104)
Q Consensus 678 p~Ct~~~fP~~~~hci~wAr~~ 699 (1104)
|+||+++||+.++|||+||+++
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~ 175 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARML 175 (234)
T ss_pred CccccCCCCCCchHHHHHHHHH
Confidence 9999999999999999999974
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-58 Score=493.05 Aligned_cols=345 Identities=28% Similarity=0.487 Sum_probs=277.8
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHH
Q 001301 507 GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 586 (1104)
Q Consensus 507 G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~ 586 (1104)
+.+..+.|.+.+|+||||||+|||++||||++|+ +.++|||||+||+|||||||||+++|||++||++||+.+.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 4678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc---c-------cceEecccCCcccceE
Q 001301 587 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF---Q-------KPLLESGTLGAKCNTQ 656 (1104)
Q Consensus 587 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~---~-------~pli~~g~~G~~G~v~ 656 (1104)
..|...|.+|..++.+ ++.+|+++||+||+++|++++|+|||.+.+.. + +|+||+|+.|+|||++
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999986 45689999999999999999999999876543 2 6999999999999999
Q ss_pred EEeCCcccccCcCCC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHH
Q 001301 657 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQAR 734 (1104)
Q Consensus 657 v~ip~~t~~y~~~~~--p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 734 (1104)
+++|+.|.|+.|+.| |++..+|+||+.+.|..|+|||+|++-
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~l------------------------------------ 224 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKL------------------------------------ 224 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhh------------------------------------
Confidence 999999999999877 777789999999999999999999653
Q ss_pred HhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHH
Q 001301 735 DNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFL 814 (1104)
Q Consensus 735 ~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv 814 (1104)
++|.+. .|--..+|++|+.
T Consensus 225 ---------------------iqwpe~-----------------------------------~~~g~~~~gdd~~----- 243 (422)
T KOG2015|consen 225 ---------------------IQWPEL-----------------------------------NPFGVPLDGDDPE----- 243 (422)
T ss_pred ---------------------hcchhh-----------------------------------CccCCCCCCCCHH-----
Confidence 122220 0101223333333
Q ss_pred HHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCC
Q 001301 815 MAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLP 894 (1104)
Q Consensus 815 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 894 (1104)
T Consensus 244 -------------------------------------------------------------------------------- 243 (422)
T KOG2015|consen 244 -------------------------------------------------------------------------------- 243 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCc
Q 001301 895 TGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 974 (1104)
Q Consensus 895 ~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 974 (1104)
||+||.--+|.||..|+|+.+++..+.++..+||||+|||||+||+.+|.|++|++...
T Consensus 244 ------------------hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~--- 302 (422)
T KOG2015|consen 244 ------------------HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT--- 302 (422)
T ss_pred ------------------HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc---
Confidence 56666666677777777777888888999999999999999999999999999999863
Q ss_pred ccccccccccccCcccccCCCCCCccccCCcc---ee--EEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCC-ceeec
Q 001301 975 EDYRNTFANLALPLFSMAEPVPPKVFKHQDMS---WT--VWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGS-CLLFN 1047 (1104)
Q Consensus 975 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~---~t--~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~-~~LY~ 1047 (1104)
..|-+-|+| |...|.....++...+.+ .+ .-..+++....||+++++++.+. +++.+.++.-. ..||.
T Consensus 303 ~~~~~Nym~-----~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 303 DDPLDNYMN-----YNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred chhhhhhee-----eecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 234444553 223333222222211100 00 01224555678999999999988 99999886432 78999
Q ss_pred cCCc----chhhcccCcHHHH
Q 001301 1048 SMFP----RHKERMDKKVVDL 1064 (1104)
Q Consensus 1048 ~~~~----~~~~~l~~~l~~l 1064 (1104)
+++| ..++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9987 4468899999999
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1e-57 Score=504.73 Aligned_cols=249 Identities=33% Similarity=0.578 Sum_probs=225.5
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc--------ccceEecccCCcccceEEEeCCcccccCcC
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 669 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--------~~pli~~g~~G~~G~v~v~ip~~t~~y~~~ 669 (1104)
.++.+ ++.+|++++|+||+|+||+++|+++|+.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 34689999999999999999999999998664 499999999999999999999999999997
Q ss_pred CC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhh
Q 001301 670 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKE 747 (1104)
Q Consensus 670 ~~--p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 747 (1104)
.+ |+++.+|+||++++|+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 76 7778899999999999999999998862
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCC
Q 001301 748 RCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGI 827 (1104)
Q Consensus 748 ~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~~a~l~a~~~~i 827 (1104)
.|+..+ |.
T Consensus 183 ------------------------------------------~~~~~~--~~---------------------------- 190 (291)
T cd01488 183 ------------------------------------------QWPKEF--PF---------------------------- 190 (291)
T ss_pred ------------------------------------------eccccc--CC----------------------------
Confidence 011100 00
Q ss_pred CCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceeccc
Q 001301 828 PIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKD 907 (1104)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKD 907 (1104)
..||+|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 125566
Q ss_pred CCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCC
Q 001301 908 DDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 972 (1104)
Q Consensus 908 Dd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~ 972 (1104)
|+. ||+||+..|+.||.+|+|+..+...+++|+||||||||||||+|||++|.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 654 999999999999999999999999999999999999999999999999999999999754
No 10
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=6e-55 Score=507.04 Aligned_cols=366 Identities=25% Similarity=0.391 Sum_probs=284.9
Q ss_pred HHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHH
Q 001301 100 DLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI 179 (1104)
Q Consensus 100 ~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~ 179 (1104)
.|||||+|+||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++++|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeecccc------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCC
Q 001301 180 QKLQELNNAVAISALTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 253 (1104)
Q Consensus 180 ~~L~eLNp~V~V~~~~~~l~------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 253 (1104)
++|++|||+|+++++...++ ++++++||+||+|.++...+..|+++|++++ +|||.+++.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999887652 5789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeE----------eecccccCCCC-CeeeeccCCc
Q 001301 254 EFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSE----------VHGMTELNDGK-PRKVKNARPY 322 (1104)
Q Consensus 254 ~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~e----------v~gm~~ln~~~-~~~i~~~~~~ 322 (1104)
+|+|++++++... ..++|.+|||+|..+.++.+ +.+-|...... .+.|...+++. |...+.+..|
T Consensus 158 ~h~i~et~p~~~~--~DLRL~~P~peL~~~~~~~d--l~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f 233 (425)
T cd01493 158 EHTIVESHPDNAL--EDLRLDNPFPELREHADSID--LDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEF 233 (425)
T ss_pred CeEEEECCCCCCC--cCcccCCCcHHHHHHHHhcC--CccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 6889999988644 45899999999999987654 33322111111 12333334433 3222222222
Q ss_pred cccc------ccCcccccccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHH-hC
Q 001301 323 SFSI------DEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQE-LG 395 (1104)
Q Consensus 323 ~~~i------~~dt~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~-~g 395 (1104)
+-.+ ..|..+|.+-... ..+-...+ .+ -.++++.++++. ....+ .....+|++.+||.+|.++ +|
T Consensus 234 ~~~i~~~~~~~~~eeNf~EA~~~-~~~~~~~~-~i-~~~v~~~~~~~~---~~~~~--~~~~~fwi~~~alk~F~~~~~g 305 (425)
T cd01493 234 RDLVRSLMRSNEDEENFEEAIKA-VNKALNRT-KI-PSSVEEIFNDDR---CENLT--SQSSSFWIMARALKEFVAEENG 305 (425)
T ss_pred HHHHHHhcccCCCccchHHHHHH-HHHhhCCC-CC-cHHHHHHHhchh---cccCC--CCCchHHHHHHHHHHHHHhcCC
Confidence 2111 2345556542110 00000111 00 134455555441 01111 2345699999999999988 99
Q ss_pred CCCCCCC----------------------HHHHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhc--------cCccC
Q 001301 396 RFPVAGS----------------------EEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGA--------RAVLN 445 (1104)
Q Consensus 396 r~P~~~~----------------------~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~--------~~el~ 445 (1104)
.+|.++. .+|++++..++.++..+.+.. .+.|+++.|+.||+++ +.--|
T Consensus 306 ~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~ 384 (425)
T cd01493 306 LLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEH 384 (425)
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccc
Confidence 9998774 678899999998888776642 3679999999999986 22239
Q ss_pred chhhhhcchhhHHHHHhhccCcccccceeeccCCCC
Q 001301 446 PMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 481 (1104)
Q Consensus 446 PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~ 481 (1104)
|+|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 385 ~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 385 NISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred hHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 999999999999999999999999999999999865
No 11
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-53 Score=451.50 Aligned_cols=314 Identities=35% Similarity=0.472 Sum_probs=265.5
Q ss_pred CCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch
Q 001301 94 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
.++.+..+||||||+||.++|++|+++||||+|++|+|+||+|||+|+|||++|++|+..|++.|++.|||+..+++|++
T Consensus 6 lse~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ 85 (331)
T KOG2014|consen 6 LSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQT 85 (331)
T ss_pred hhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeccc---chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 174 RALASIQKLQELNNAVAISALTTEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
||+++.+++++|||.|+|.+.++++ +++|+.+||+||.+..+.+...++|++||+++ |+|+.++++|++||+|+|
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~d 163 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFAD 163 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeeee
Confidence 9999999999999999999998876 56899999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCc
Q 001301 251 FGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDT 330 (1104)
Q Consensus 251 ~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt 330 (1104)
+++ |.+.+..-.. ..++ .++..++ |+
T Consensus 164 L~~-h~y~~~~~~~------~~~~-----------------------------------~~k~~k~------------~~ 189 (331)
T KOG2014|consen 164 LQE-HKYLEEKTKV------AKVS-----------------------------------QTKRAKV------------DE 189 (331)
T ss_pred hhh-hhhhhhcccc------cccc-----------------------------------cccceee------------ee
Confidence 985 4333211000 0000 0010100 00
Q ss_pred ccccccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 001301 331 TNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKII 410 (1104)
Q Consensus 331 ~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~ 410 (1104)
+ +.+-....+.|+|++|+|+.++. .....+..|...+|++++++..|.+.+||.|+.-..+|.+.++
T Consensus 190 ~-----------~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~ 256 (331)
T KOG2014|consen 190 T-----------ETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLL 256 (331)
T ss_pred c-----------cceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 0 00122357889999999986631 1122345678889999999999999999999977799999999
Q ss_pred HHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCC
Q 001301 411 SLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 482 (1104)
Q Consensus 411 ~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~l 482 (1104)
.|.+++++..+ -+++.++ +|..+...+++|+||++|||+||||||+||++-.|++|||||||.++.
T Consensus 257 ~I~~ell~s~~-----i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 257 QIRNELLESET-----IIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHHhhccccc-----cCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 99999987332 3456666 888899999999999999999999999999999999999999999884
No 12
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-52 Score=460.51 Aligned_cols=375 Identities=24% Similarity=0.392 Sum_probs=293.8
Q ss_pred hHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHH
Q 001301 98 DEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALA 177 (1104)
Q Consensus 98 d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea 177 (1104)
.+.+||||+|+||.+||..|..++||++|+|++|+|++|||+|+|||+||++|...|..+|++.|||+..+++|++||++
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a 85 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEA 85 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeeccc------chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec
Q 001301 178 SIQKLQELNNAVAISALTTEL------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 178 ~~~~L~eLNp~V~V~~~~~~l------~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
+++.|++|||.|......+.. +++++++|++||.+..+.+...++.++||.++ ||++.+.++|+.|++++..
T Consensus 86 ~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 86 TLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEEe
Confidence 999999999999998877653 45799999999999999999999999999999 9999999999999999998
Q ss_pred CCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEee----------ccc-ccCCCCCeeeeccC
Q 001301 252 GPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVH----------GMT-ELNDGKPRKVKNAR 320 (1104)
Q Consensus 252 g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~----------gm~-~ln~~~~~~i~~~~ 320 (1104)
. +|++++.+++.|..+ +++.+|||++.+++++.+++..+-. .+++++ -|. +.|+..|...+.++
T Consensus 164 k-EH~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~a--~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk 238 (523)
T KOG2016|consen 164 K-EHTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDPA--AHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKK 238 (523)
T ss_pred e-eccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccchh--hhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 6 599999999988765 8999999999999987665533321 111111 000 11111111110000
Q ss_pred Cc-----------------------------------------------------c----------ccc-----------
Q 001301 321 PY-----------------------------------------------------S----------FSI----------- 326 (1104)
Q Consensus 321 ~~-----------------------------------------------------~----------~~i----------- 326 (1104)
.| . |.+
T Consensus 239 ~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~G 318 (523)
T KOG2016|consen 239 EFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRG 318 (523)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCC
Confidence 00 0 000
Q ss_pred -----ccCcccccc----ccc--------------------CCeEEEeec------------CeeecccchhhhhcCCCC
Q 001301 327 -----DEDTTNYSA----YEK--------------------GGIVTQVKQ------------PKIINFKPLREALKDPGD 365 (1104)
Q Consensus 327 -----~~dt~~f~~----y~~--------------------gg~~~qvk~------------p~~~~f~sL~e~L~~p~~ 365 (1104)
.++|.+|.. |.. |.....+.. -+++.|+++++..+ |..
T Consensus 319 tlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~ 397 (523)
T KOG2016|consen 319 TLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSI 397 (523)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccc
Confidence 012333322 100 111111111 16788888888877 311
Q ss_pred ---ccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhcc
Q 001301 366 ---FLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS-EEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGAR 441 (1104)
Q Consensus 366 ---~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~-~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~ 441 (1104)
...++.........+|+++||+++|..++|++|+... ++|+..+..++..+..+++... ..+.++.+.+|||++.
T Consensus 398 ~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~-~~v~d~~i~E~cR~ga 476 (523)
T KOG2016|consen 398 TELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG-NAVTDDAIHEICRFGA 476 (523)
T ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc-ccCcHHHHHHHHhcCC
Confidence 0111111223456799999999999999999999432 6899999999999998887532 4688999999999999
Q ss_pred CccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCC
Q 001301 442 AVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 481 (1104)
Q Consensus 442 ~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~ 481 (1104)
+|+|.|+||+||+|||||||++|+||+||+|+|+|||+..
T Consensus 477 aElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 477 AELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 9999999999999999999999999999999999999865
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.7e-37 Score=329.09 Aligned_cols=149 Identities=40% Similarity=0.683 Sum_probs=142.6
Q ss_pred HHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHH
Q 001301 100 DLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI 179 (1104)
Q Consensus 100 ~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~ 179 (1104)
++||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeecccc---hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 180 QKLQELNNAVAISALTTELT---KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 180 ~~L~eLNp~V~V~~~~~~l~---~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|++|++|+|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFAD 153 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEEe
Confidence 99999999999999887664 3688999999999999999999999999999 999999999999988753
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.4e-36 Score=322.51 Aligned_cols=149 Identities=41% Similarity=0.643 Sum_probs=141.6
Q ss_pred HHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCc--CcccchHHHHH
Q 001301 101 LHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSE--DDVGKNRALAS 178 (1104)
Q Consensus 101 ~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~--~diGk~Kaea~ 178 (1104)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhCCCcEEEEeecccc------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec
Q 001301 179 IQKLQELNNAVAISALTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 179 ~~~L~eLNp~V~V~~~~~~l~------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
+++|+++||+|+|+++...+. ++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|++|++|+|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEch
Confidence 999999999999999887653 3688999999999999999999999999999 9999999999999988553
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3e-36 Score=331.57 Aligned_cols=182 Identities=26% Similarity=0.342 Sum_probs=166.2
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
..+||+||+.++|.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|.||.||||||++|+.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 3589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccccceEecccCCcc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
+|+++++++++++||+++|+++..++++++. +++++++|+||||+||+ ++|.++|+.|+.+++|+|++++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999986553 56889999999999996 89999999999999999999999999
Q ss_pred cceEEEeCCcccccCcC-CC---CCC---------CCCCcccccCCC
Q 001301 653 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 686 (1104)
Q Consensus 653 G~v~v~ip~~t~~y~~~-~~---p~~---------~~~p~Ct~~~fP 686 (1104)
|++.++.|+ +.||.|- +. |++ ...|.|....+.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999987 7899983 32 333 356778766655
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4.9e-36 Score=319.52 Aligned_cols=175 Identities=29% Similarity=0.482 Sum_probs=160.6
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 498 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 498 RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
|||||+++ ||.+.|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.||.+||+||+||+++|+|++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
|+++++++++++||+++++++...+.+++ + .++++++|+||+|+||.++|.++++.|+++++|+|++|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCC-cccccCcCCCCCCCCCCccc
Q 001301 656 QMVIPH-LTENYGASRDPPEKQAPMCT 681 (1104)
Q Consensus 656 ~v~ip~-~t~~y~~~~~p~~~~~p~Ct 681 (1104)
.++.|+ .++||.|.........+.|.
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~ 178 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCA 178 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCc
Confidence 999998 79999995432222345563
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.1e-35 Score=319.46 Aligned_cols=164 Identities=37% Similarity=0.572 Sum_probs=156.3
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 498 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 498 RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.||||||+||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
|+++++++++++||+++|+++..+++.++. .++++++|+||+|+||+++|.++++.|+++++|+|++|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAENA----EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHHH----HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 999999999999999999999988864321 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcCC
Q 001301 656 QMVIPHLTENYGASR 670 (1104)
Q Consensus 656 ~v~ip~~t~~y~~~~ 670 (1104)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999943
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.2e-35 Score=323.15 Aligned_cols=164 Identities=34% Similarity=0.503 Sum_probs=155.9
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 497 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 497 ~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.||.|||+||+||+++|||+
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 799999987 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++|+++||+++|+++..++.+++. +++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 161 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQ 161 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCce
Confidence 9999999999999999999999988875321 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCCc-ccccCcC
Q 001301 655 TQMVIPHL-TENYGAS 669 (1104)
Q Consensus 655 v~v~ip~~-t~~y~~~ 669 (1104)
+.++.|+. ++||.|.
T Consensus 162 v~~~~~~~~~~c~~c~ 177 (245)
T PRK05690 162 VTVFTYQDDEPCYRCL 177 (245)
T ss_pred EEEEecCCCCceeeec
Confidence 99999875 7999984
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=4e-35 Score=341.10 Aligned_cols=177 Identities=28% Similarity=0.452 Sum_probs=162.7
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||||||||+++|||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
++||++++++|+++||.++|+++..++.+++. .+++.++|+||+|+||+++|.++|+.|+.+++|+|.+++.|+.|
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 99999999999999999999999998886432 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCCcccccCcC-CC-CCCCCCCccc
Q 001301 654 NTQMVIPHLTENYGAS-RD-PPEKQAPMCT 681 (1104)
Q Consensus 654 ~v~v~ip~~t~~y~~~-~~-p~~~~~p~Ct 681 (1104)
++.++.|+.++||.|- +. |+....|.|.
T Consensus 167 ~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 167 QATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 9999888889999994 33 2333345563
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=7e-35 Score=316.66 Aligned_cols=164 Identities=32% Similarity=0.465 Sum_probs=156.3
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc-c
Q 001301 497 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 575 (1104)
Q Consensus 497 ~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~-~ 575 (1104)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
|+++++++++++||+++|+++..++++++ + +++++++|+||+|+||.++|.++++.|+++++|+|++|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998886543 2 4688999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcC
Q 001301 656 QMVIPHLTENYGAS 669 (1104)
Q Consensus 656 ~v~ip~~t~~y~~~ 669 (1104)
.+++|+.|.||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999874
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.5e-34 Score=332.56 Aligned_cols=178 Identities=29% Similarity=0.388 Sum_probs=163.7
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+|||||+++|||
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG 80 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVG 80 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
++|+++++++|+++||+++|+++..++.+++. .++++++|+||+|+||+.+|.+++..|+++++|+|.+++.|+.|
T Consensus 81 ~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 81 QPKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 99999999999999999999999988875432 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCCcccccCcC-CC-CCCCCCCcccc
Q 001301 654 NTQMVIPHLTENYGAS-RD-PPEKQAPMCTV 682 (1104)
Q Consensus 654 ~v~v~ip~~t~~y~~~-~~-p~~~~~p~Ct~ 682 (1104)
++.++.|+.++||.|. +. |+....+.|..
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 187 (355)
T PRK05597 157 QLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQ 187 (355)
T ss_pred EEEEEcCCCCCCHHHhCCCCCCccCCCCccc
Confidence 9999999889999993 33 33345667743
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.9e-34 Score=311.24 Aligned_cols=166 Identities=30% Similarity=0.455 Sum_probs=153.5
Q ss_pred cCcchhhhhcc--CHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISVF--GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l~--G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
.+||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.||.||||||+||+++|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 37999999995 6899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+++|.++++.|+++++|+|.++..|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 99999999999999999999999988875322 46789999999999999999999999999999999999999999
Q ss_pred ceEEEe-CCcccccCcCC
Q 001301 654 NTQMVI-PHLTENYGASR 670 (1104)
Q Consensus 654 ~v~v~i-p~~t~~y~~~~ 670 (1104)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578998853
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=6.1e-34 Score=301.89 Aligned_cols=152 Identities=26% Similarity=0.427 Sum_probs=144.8
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccch
Q 001301 497 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 576 (1104)
Q Consensus 497 ~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~K 576 (1104)
.|||||+++||.++|++|++++|+|+|+||+|||++|+|+++|| |+|+|+|+|.|+.|||+|||||+++|+|++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceE
Q 001301 577 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 656 (1104)
Q Consensus 577 a~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~ 656 (1104)
+++++++|+++||+++|+++...+.+. +.+||+++|+||+|.|+.++|.++++.|++.++|+|.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 357899999999999999999999999999999999999999999876
Q ss_pred EE
Q 001301 657 MV 658 (1104)
Q Consensus 657 v~ 658 (1104)
..
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 24
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=3.6e-32 Score=316.74 Aligned_cols=186 Identities=23% Similarity=0.363 Sum_probs=166.9
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccch
Q 001301 497 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 576 (1104)
Q Consensus 497 ~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~K 576 (1104)
.|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceE
Q 001301 577 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 656 (1104)
Q Consensus 577 a~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~ 656 (1104)
|+++++.|+++||+++++++...+..-. ..+.+||+++|+||.|.++...+..+++.|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll--~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALL--DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhh--hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 9999999999999999999887654211 12368999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccCcCCCCCCCCCCcccccCCCCChhhH
Q 001301 657 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 692 (1104)
Q Consensus 657 v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hc 692 (1104)
+.+|..+ +..+ .|......+...+.||++.+|+
T Consensus 154 v~~~~h~-i~et--~p~~~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKEHT-IVES--HPDNALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECCeE-EEEC--CCCCCCcCcccCCCcHHHHHHH
Confidence 9999532 4443 4444557778889999998865
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.2e-33 Score=329.52 Aligned_cols=164 Identities=27% Similarity=0.470 Sum_probs=155.3
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 497 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 497 ~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|||||+++|||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 95 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVGR 95 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCCC
Confidence 899999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++|+++||+++|+++..++..++. .++++++|+||+|+||+.+|.++|+.|+.+++|+|.+++.|+.|+
T Consensus 96 ~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 96 SKAQSARDSIVEINPLVNVRLHEFRLDPSNA----VELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeccCChhHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999988875432 567899999999999999999999999999999999999999999
Q ss_pred eEEEeCC----cccccCcC
Q 001301 655 TQMVIPH----LTENYGAS 669 (1104)
Q Consensus 655 v~v~ip~----~t~~y~~~ 669 (1104)
+.++.+. .+.||.|.
T Consensus 172 v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 172 ASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred EEEEecCCCCCCCCeeeee
Confidence 9988743 68899994
No 26
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=9.6e-33 Score=321.91 Aligned_cols=155 Identities=20% Similarity=0.256 Sum_probs=147.6
Q ss_pred CCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.+..+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCC
Confidence 556667999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||++++++|+++||+|+|+++...++. +++++||+||+|.|+...+..+|++|++++ +|||++++.|++|++
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~v 172 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQA 172 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999888764 578899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001301 248 FCD 250 (1104)
Q Consensus 248 f~d 250 (1104)
++.
T Consensus 173 ~~~ 175 (392)
T PRK07878 173 SVF 175 (392)
T ss_pred EEE
Confidence 843
No 27
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.3e-33 Score=325.50 Aligned_cols=175 Identities=27% Similarity=0.476 Sum_probs=159.2
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 497 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 497 ~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG~ 94 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVGR 94 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+++|.++|+.|+.+++|+|++++.|+.|+
T Consensus 95 ~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~ 170 (370)
T PRK05600 95 PKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGE 170 (370)
T ss_pred HHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEE
Confidence 9999999999999999999999999875432 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCCc---ccccCcC-CC-CCCCCCCcc
Q 001301 655 TQMVIPHL---TENYGAS-RD-PPEKQAPMC 680 (1104)
Q Consensus 655 v~v~ip~~---t~~y~~~-~~-p~~~~~p~C 680 (1104)
+.++.|.. +.||.|. +. |+....+.|
T Consensus 171 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c 201 (370)
T PRK05600 171 LAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC 201 (370)
T ss_pred EEEEecCCCCCCCCcHhhCCCCCccccCCCC
Confidence 99988753 5788873 32 222334555
No 28
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6.3e-33 Score=310.68 Aligned_cols=279 Identities=19% Similarity=0.299 Sum_probs=212.1
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 200 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 200 (1104)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred -----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEec-CCCCCCccceecccc
Q 001301 201 -----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFD-VDGEEPHTGIIASIS 274 (1104)
Q Consensus 201 -----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d-~~ge~p~~~~i~~i~ 274 (1104)
+++++||+||+|.|+.+.+..+|++|+.++ +|||.+++.|++|++++++|..+.|++ ..++.|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 789999999999999999999999999999 999999999999999999988887777 667778888888898
Q ss_pred CCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEeecCeeeccc
Q 001301 275 NDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFK 354 (1104)
Q Consensus 275 ~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~p~~~~f~ 354 (1104)
+.....++|++..++.++ .|..+ |...|. .. ......|+.-|.|..+.|.
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~~-------------------f~~~i~----~l--~~~~~~w~~~~~p~p~~~~ 208 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNKV-------------------FKDDIE----RL--LSMEELWKTRKPPVPLSWK 208 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHHH-------------------HHHHHH----HH--HhhhhhhcCCCCCCCCCCC
Confidence 877888888876554333 00000 000000 00 0000001111111111111
Q ss_pred chhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccccccCHHHHH
Q 001301 355 PLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLC 434 (1104)
Q Consensus 355 sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~ 434 (1104)
. ..|. ..|.++.+-+.+.++.....+++ ...+...++
T Consensus 209 ~--------------------------------~~fd--------kDd~~~~~~v~~~a~lRa~~f~I---~~~~~~~~k 245 (312)
T cd01489 209 E--------------------------------LTFD--------KDDQDALDFVAAAANLRSHVFGI---PMKSRFDIK 245 (312)
T ss_pred C--------------------------------cCcC--------CCCHHHHHHHHHHHHHHHHHcCC---CCCCHHHHH
Confidence 1 0010 11233445555556555565553 456777889
Q ss_pred HHHhhccCccCchhhhhcchhhHHHHHhhccCccccccee
Q 001301 435 HFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFF 474 (1104)
Q Consensus 435 ~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l 474 (1104)
.++...-+.++.+.|+++|++..|++|.++++..-.++.|
T Consensus 246 ~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~ 285 (312)
T cd01489 246 QMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVF 285 (312)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHh
Confidence 9999999999999999999999999999999865555543
No 29
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.7e-33 Score=310.13 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=162.3
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchH
Q 001301 498 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 577 (1104)
Q Consensus 498 RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka 577 (1104)
.||||+++||.++|+||++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+|+++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEE
Q 001301 578 TVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQM 657 (1104)
Q Consensus 578 ~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v 657 (1104)
++++++|+++||+++|+++...+ +.+++.++|+||+|.|+.++|.++|++|++.++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999997653 2467899999999999999999999999999999999999999999887
Q ss_pred EeCCcccccCcC-CC-CCCCCCCcccccCCCCChhhHHH
Q 001301 658 VIPHLTENYGAS-RD-PPEKQAPMCTVHSFPHNIDHCLT 694 (1104)
Q Consensus 658 ~ip~~t~~y~~~-~~-p~~~~~p~Ct~~~fP~~~~hci~ 694 (1104)
..+ +||.|. .+ ++.++++.|.+.+-+....||+.
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~ 183 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLD 183 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEEC
Confidence 544 566663 11 23356778888776777778863
No 30
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=3.1e-33 Score=296.90 Aligned_cols=154 Identities=24% Similarity=0.442 Sum_probs=144.1
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCccc--Cccccc
Q 001301 498 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 575 (1104)
Q Consensus 498 RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~--~diG~~ 575 (1104)
|||||+++||.++|++|++++|+|||+||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 6999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
|+++++++|+++||+++|+++...+....+ ...+||+++|+||+|.|+..+|.+++++|+++++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999877652111 236789999999999999999999999999999999999999999998
Q ss_pred EEE
Q 001301 656 QMV 658 (1104)
Q Consensus 656 ~v~ 658 (1104)
.+.
T Consensus 154 ~~~ 156 (198)
T cd01485 154 FFD 156 (198)
T ss_pred EEc
Confidence 754
No 31
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.4e-32 Score=314.41 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=146.5
Q ss_pred chhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch
Q 001301 96 DIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
+++.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 5678899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 174 RALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
||++++++|+++||+|+|+++...++. ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++++
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEEE
Confidence 999999999999999999999888764 578999999999999999999999999999 99999999999999885
No 32
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=315.56 Aligned_cols=166 Identities=30% Similarity=0.451 Sum_probs=156.2
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~ 76 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAK 76 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHcc
Confidence 3799999998 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred --cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 574 --QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 574 --~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
++|+++|+++++++||+++|+++...+++++ + .++++++|+||+|+||+++|.++|+.|+++++|+|.+|+.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 77 QKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred CCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 8999999999999999999999988776432 1 457899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCcCC
Q 001301 652 KCNTQMVIPHLTENYGASR 670 (1104)
Q Consensus 652 ~G~v~v~ip~~t~~y~~~~ 670 (1104)
.|++.+++|+.|+||.|-.
T Consensus 153 ~G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 153 YGVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEEECCCCCCCHHHhc
Confidence 9999999999999999953
No 33
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.98 E-value=1.5e-32 Score=313.60 Aligned_cols=165 Identities=28% Similarity=0.425 Sum_probs=155.8
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 574 --QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 574 --~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988875332 357899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCcC
Q 001301 652 KCNTQMVIPHLTENYGAS 669 (1104)
Q Consensus 652 ~G~v~v~ip~~t~~y~~~ 669 (1104)
.|++.++.|+.++||.|.
T Consensus 153 ~G~~~~~~p~~~pC~~Cl 170 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCL 170 (339)
T ss_pred eeEEEEECCCCCCCeEee
Confidence 999999999999999994
No 34
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=1.5e-31 Score=294.54 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=147.9
Q ss_pred hhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHH
Q 001301 97 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 176 (1104)
Q Consensus 97 ~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kae 176 (1104)
.-+++|+||+.++|.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||+
T Consensus 5 ~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 5 DYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred cHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCH--hHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 177 ASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISL--EKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 177 a~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~--~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
+++++|+++||+++|+++...+++ ++++++|+||++.|++ +.+..+|++|++++ +|||++++.|+.|++.+-
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v~ 162 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLVF 162 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEEE
Confidence 999999999999999999988865 5788999999999975 89999999999999 999999999999987654
Q ss_pred c--CCceEEe
Q 001301 251 F--GPEFTVF 258 (1104)
Q Consensus 251 ~--g~~f~v~ 258 (1104)
. |++|.++
T Consensus 163 ~p~~p~~~~~ 172 (287)
T PRK08223 163 DPGGMSFDDY 172 (287)
T ss_pred cCCCCchhhh
Confidence 4 3444433
No 35
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=4.2e-31 Score=289.42 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=147.0
Q ss_pred CCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 5 l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 84 (245)
T PRK05690 5 LSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIG 84 (245)
T ss_pred CCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCC
Confidence 446667899999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||++++++|+++||+++|+++...+++ +++++||+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++
T Consensus 85 ~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v 162 (245)
T PRK05690 85 QPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEGQV 162 (245)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCceE
Confidence 99999999999999999999999988765 468899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001301 248 FCD 250 (1104)
Q Consensus 248 f~d 250 (1104)
..-
T Consensus 163 ~~~ 165 (245)
T PRK05690 163 TVF 165 (245)
T ss_pred EEE
Confidence 764
No 36
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=1.8e-31 Score=284.56 Aligned_cols=149 Identities=29% Similarity=0.438 Sum_probs=143.1
Q ss_pred HHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHH
Q 001301 101 LHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 178 (1104)
Q Consensus 101 ~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~ 178 (1104)
|||||+++ ||.++|+||++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec
Q 001301 179 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 179 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
+++|+++||+++++.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|++|+++.-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999887764 468899999999999999999999999999 9999999999999988754
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.9e-31 Score=307.58 Aligned_cols=164 Identities=31% Similarity=0.518 Sum_probs=155.7
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 497 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 497 ~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
+||+||+.+ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++++++||.++|+++...+.+++. .++++++|+||+|+||+++|.+++++|+++++|+|.+|+.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765321 457889999999999999999999999999999999999999999
Q ss_pred eEEEeCCc----ccccCcC
Q 001301 655 TQMVIPHL----TENYGAS 669 (1104)
Q Consensus 655 v~v~ip~~----t~~y~~~ 669 (1104)
+.++.|+. +.||.|.
T Consensus 265 v~~~~p~~~~~~~~c~~c~ 283 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCL 283 (376)
T ss_pred EEEEeCCCCCCCCCCHhhc
Confidence 99999886 8999994
No 38
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.3e-32 Score=293.54 Aligned_cols=174 Identities=31% Similarity=0.474 Sum_probs=161.9
Q ss_pred CCCCCCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCccc
Q 001301 486 PLDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSR 563 (1104)
Q Consensus 486 ~~~~~~~~~~~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnR 563 (1104)
.++.+++ .||+||+.+ ||..+|.+|++++|+||||||+||..+..||.+|| |+|-|+|.|.||.|||.|
T Consensus 38 ~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 38 GLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHH
Confidence 4566666 899999998 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccCcccCccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccce
Q 001301 564 QFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 643 (1104)
Q Consensus 564 QfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pl 643 (1104)
|.++++..+|+.|++.|+..++++||+++|..|...+..++. | +++++||+|+||+||+.+|..|++.|+.+++||
T Consensus 109 QVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa--~--~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpL 184 (427)
T KOG2017|consen 109 QVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA--F--DIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPL 184 (427)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH--H--HHhhccceEEEcCCCccchhhhhhHHHHcCCcc
Confidence 999999999999999999999999999999999999987664 3 578999999999999999999999999999999
Q ss_pred EecccCCcccceEEEeCCcccccCc-CCCC
Q 001301 644 LESGTLGAKCNTQMVIPHLTENYGA-SRDP 672 (1104)
Q Consensus 644 i~~g~~G~~G~v~v~ip~~t~~y~~-~~~p 672 (1104)
+.+..+++.||..++--...+||.| .+.|
T Consensus 185 VSgSaLr~EGQLtvYny~~GPCYRClFP~P 214 (427)
T KOG2017|consen 185 VSGSALRWEGQLTVYNYNNGPCYRCLFPNP 214 (427)
T ss_pred cccccccccceeEEeecCCCceeeecCCCC
Confidence 9999999999988875567899999 3444
No 39
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=4.3e-31 Score=291.69 Aligned_cols=166 Identities=38% Similarity=0.597 Sum_probs=156.5
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
..||+||+.+ +|.++|++|++++|+|||+||+||+++++|+++|| |+++|+|.|+|+.|||+||++|++.|+|
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccC
Confidence 3899999999 45555999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
++|++++++.++++||.++++++...++.++. ..++.++|+|++|+||+.+|..+|..|+..++|++++|+.|+.|
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g 158 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEG 158 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceE
Confidence 99999999999999999999999999886543 46889999999999999999999999999999999999999999
Q ss_pred ceEEEeCC-cccccCcCC
Q 001301 654 NTQMVIPH-LTENYGASR 670 (1104)
Q Consensus 654 ~v~v~ip~-~t~~y~~~~ 670 (1104)
++.+++|. .++||.|..
T Consensus 159 ~~~~~~~~~~~~c~~~~~ 176 (254)
T COG0476 159 QVTVIIPGDKTPCYRCLF 176 (254)
T ss_pred EEEEEecCCCCCcccccC
Confidence 99999999 599999843
No 40
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=1.3e-30 Score=303.49 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=152.8
Q ss_pred CCCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcc
Q 001301 93 NPSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 170 (1104)
Q Consensus 93 ~~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di 170 (1104)
..++.+.+||+||+++ ||.++|+||++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+|||+++++||
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 3556778899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEE
Q 001301 171 GKNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 171 Gk~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 246 (1104)
|++||++++++|+++||+|+|+++...+++ +++.+||+||+|.|+.+.+..||++|++.+ +|+|++++.|++|+
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~ 167 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFEGQ 167 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCEEE
Confidence 999999999999999999999999988865 478999999999999999999999999999 99999999999999
Q ss_pred EEeec---CCceEEec
Q 001301 247 IFCDF---GPEFTVFD 259 (1104)
Q Consensus 247 vf~d~---g~~f~v~d 259 (1104)
+.+-. +++|.|+-
T Consensus 168 ~~v~~~~~~~c~~c~~ 183 (390)
T PRK07411 168 ATVFNYEGGPNYRDLY 183 (390)
T ss_pred EEEECCCCCCChHHhc
Confidence 87643 23554443
No 41
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=9.8e-31 Score=284.22 Aligned_cols=149 Identities=28% Similarity=0.420 Sum_probs=142.8
Q ss_pred HHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHH
Q 001301 101 LHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 178 (1104)
Q Consensus 101 ~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~ 178 (1104)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec
Q 001301 179 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 179 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
+++|+++||+++|+.++..++. ++++++|+||+|.|+.+.+..++++|++++ +|+|.+++.|+.|++....
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEEC
Confidence 9999999999999999887754 478899999999999999999999999999 9999999999999987654
No 42
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=7.4e-32 Score=263.76 Aligned_cols=123 Identities=41% Similarity=0.813 Sum_probs=99.0
Q ss_pred ccccccccccCcccccCCCCCCccccCCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeeccC-Ccchh
Q 001301 977 YRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSM-FPRHK 1054 (1104)
Q Consensus 977 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~-~~~~~ 1054 (1104)
|||+|+|||+|+|.|+||.+|++.++.+.+||+||||++.+++||++||++|+++ |++++||++|++|||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 55889
Q ss_pred hcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeE
Q 001301 1055 ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 1099 (1104)
Q Consensus 1055 ~~l~~~l~~l~~~v~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v 1099 (1104)
+||+++|+||+++++++++|++++||+|+|+|+|++|+|+++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 43
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=4.8e-30 Score=284.61 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=197.4
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 199 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~- 199 (1104)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|||++||++++++|+++||.++|+++...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --hhhhcCCceEEEecCCHhHhhhHHHHHHH--------cCCCcceEEeeecceeEEEEeecCCc---eEEe-cCCCCCC
Q 001301 200 --KEKLSDFQAVVFTDISLEKAVEFDDYCHN--------HQPPIAFIKSEVRGLFGNIFCDFGPE---FTVF-DVDGEEP 265 (1104)
Q Consensus 200 --~e~l~~~dvVV~~~~~~~~~~~ln~~c~~--------~~~~ipfI~~~~~G~~G~vf~d~g~~---f~v~-d~~ge~p 265 (1104)
.+++++||+||++.|+.+.+..+|+.|.+ .+ +|||.+++.|+.|++.+..+.. |.+. |..++.
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~--iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~- 157 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESI--IPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ- 157 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccC--ccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC-
Confidence 47899999999999999999999998755 35 8999999999999998876532 3222 111110
Q ss_pred ccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEe
Q 001301 266 HTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQV 345 (1104)
Q Consensus 266 ~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qv 345 (1104)
.+..+..|.+ . |+..+.. | .|.
T Consensus 158 ~~~p~Cti~~-~-----------------------------------P~~~~hc------i-----~~a----------- 179 (291)
T cd01488 158 VTFPLCTIAN-T-----------------------------------PRLPEHC------I-----EYA----------- 179 (291)
T ss_pred CCCCcccccC-C-----------------------------------CCCcchh------e-----eee-----------
Confidence 0111111110 0 0000000 0 000
Q ss_pred ecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccc
Q 001301 346 KQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERV 425 (1104)
Q Consensus 346 k~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~ 425 (1104)
+.+. |.+. + .+.--...+.++.+.+.+.|++..+++++
T Consensus 180 ---~~~~------------------~~~~-~-----------------~~~~~~~d~~~~~~~i~~~a~~ra~~f~i--- 217 (291)
T cd01488 180 ---SLIQ------------------WPKE-F-----------------PFVPLDGDDPEHIEWLYQKALERAAQFNI--- 217 (291)
T ss_pred ---eeee------------------cccc-c-----------------CCCcCCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 0000 1000 0 00111223466777788888888887764
Q ss_pred cccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCC
Q 001301 426 EEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLP 483 (1104)
Q Consensus 426 ~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp 483 (1104)
+.++-.+++.++...-+.++.+.|++||..+-|++|.+|+...+++||+.|.|-+++-
T Consensus 218 ~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~ 275 (291)
T cd01488 218 SGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCY 275 (291)
T ss_pred CcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceE
Confidence 4567788999999999999999999999999999999999999999999999987753
No 44
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=279.13 Aligned_cols=155 Identities=28% Similarity=0.454 Sum_probs=146.1
Q ss_pred CchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccc-h
Q 001301 95 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGK-N 173 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk-~ 173 (1104)
++.+.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +
T Consensus 3 ~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 3 SERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred CHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 174 RALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..++++|++++ +|+|.+++.|++|+++.
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~ 160 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTT 160 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEE
Confidence 999999999999999999998877754 468899999999999999999999999999 99999999999999986
Q ss_pred ec
Q 001301 250 DF 251 (1104)
Q Consensus 250 d~ 251 (1104)
..
T Consensus 161 ~~ 162 (231)
T PRK08328 161 IV 162 (231)
T ss_pred EC
Confidence 54
No 45
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=1e-30 Score=319.76 Aligned_cols=166 Identities=27% Similarity=0.385 Sum_probs=155.8
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
..+||+||+.+||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.||||||++|+.+|||+
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCC
Confidence 3489999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCC--HHHHHHHhhcccccccceEecccCCcc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN--VNARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn--~~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
+|+++++++++++||.++|+++...+++++. ++|++++|+||||+|| ..+|+++++.|+.+++|+|.+|+.|+.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~ 172 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYS 172 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccccc
Confidence 9999999999999999999999999986442 5789999999999997 578999999999999999999999999
Q ss_pred cceEEEeCCcccccCcCC
Q 001301 653 CNTQMVIPHLTENYGASR 670 (1104)
Q Consensus 653 G~v~v~ip~~t~~y~~~~ 670 (1104)
|++.++.|+ +.||.|.-
T Consensus 173 g~~~~~~p~-~~~~~~~~ 189 (679)
T PRK14851 173 SAMLVFTPQ-GMGFDDYF 189 (679)
T ss_pred ceEEEEcCC-CCCHhHhc
Confidence 999999997 67777643
No 46
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=1.1e-30 Score=282.92 Aligned_cols=161 Identities=27% Similarity=0.406 Sum_probs=142.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhccccc---C-CCc-ceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN 588 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~---~-~~g-~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~n 588 (1104)
-+..+|+||||||+||+++++||++|+++ | +.| +|+|+|+|+||.|||||| +|.++|||++||+++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998643 2 113 999999999999999999 57889999999999999999988
Q ss_pred CCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc--c-ccceEeccc--------CCc-----c
Q 001301 589 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--F-QKPLLESGT--------LGA-----K 652 (1104)
Q Consensus 589 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~--~-~~pli~~g~--------~G~-----~ 652 (1104)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|++ . .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888752 2356899999999999999999999988 3 489999998 666 8
Q ss_pred cceEEEeCCcccccCcCCCC---CCCCCCccccc
Q 001301 653 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVH 683 (1104)
Q Consensus 653 G~v~v~ip~~t~~y~~~~~p---~~~~~p~Ct~~ 683 (1104)
|++++++|++|++|.+..+| ++++.|+||+.
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 89999999999999998888 77889999884
No 47
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=5.8e-30 Score=295.27 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=147.8
Q ss_pred CCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.+..+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|||
T Consensus 14 ~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 14 LPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred CCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCC
Confidence 456677899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~v 171 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGEL 171 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEEE
Confidence 99999999999999999999999988865 478899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001301 248 FCD 250 (1104)
Q Consensus 248 f~d 250 (1104)
.+-
T Consensus 172 ~v~ 174 (370)
T PRK05600 172 AVF 174 (370)
T ss_pred EEE
Confidence 653
No 48
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.97 E-value=3.4e-30 Score=281.09 Aligned_cols=148 Identities=22% Similarity=0.352 Sum_probs=141.3
Q ss_pred HHHHhhhhhcc--CHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHH
Q 001301 99 EDLHSRQLAVY--GRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 176 (1104)
Q Consensus 99 ~~~Y~RQi~l~--G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kae 176 (1104)
.+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|||++||+
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 47999999997 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 177 ASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 177 a~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
+++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++.
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 155 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVS 155 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEE
Confidence 999999999999999999888765 478899999999999999999999999999 9999999999999875
No 49
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=319.38 Aligned_cols=165 Identities=24% Similarity=0.406 Sum_probs=155.1
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
...||+||+.+||.+.|++|++++|+||||||+||+++++||++|| |+|+|+|+|+||.||||||++|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccccceEecccCCcc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
+|+++++++++++||.++|+++...+++++. ++|++++|+||+|+|++ ++|++++..|+++++|+|.+|+.|+.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999876543 57899999999999984 67889999999999999999999999
Q ss_pred cceEEEeCCcccccCcC
Q 001301 653 CNTQMVIPHLTENYGAS 669 (1104)
Q Consensus 653 G~v~v~ip~~t~~y~~~ 669 (1104)
|++.++.|+. .||.|.
T Consensus 462 g~v~v~~p~~-~~~~~~ 477 (989)
T PRK14852 462 CALLVFMPGG-MNFDSY 477 (989)
T ss_pred eeEEEEcCCC-CCHHHh
Confidence 9999999874 788874
No 50
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.1e-30 Score=286.67 Aligned_cols=363 Identities=17% Similarity=0.265 Sum_probs=242.0
Q ss_pred HHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEE
Q 001301 112 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 191 (1104)
Q Consensus 112 e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V 191 (1104)
+-++++.++|||+||+||+|||++|||++.|+++|+|+|-|+++.|||+|||||+.+|||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccch-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCC-CCC
Q 001301 192 SALTTELTK-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDG-EEP 265 (1104)
Q Consensus 192 ~~~~~~l~~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~g-e~p 265 (1104)
..+...+.+ +|+++||+|..|.|+.+.|..+|+.|.... +|+|.+|+.|+.|++.+.....-.|++..+ +.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGKTECYECIPKPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCCcceecccCCCCC
Confidence 999887744 689999999999999999999999999999 999999999999999885433344444433 456
Q ss_pred ccceeccccCCCCCceeecccccccc------cCCC--eEEEe-----EeecccccCCCCCeeeeccCCccccc-c----
Q 001301 266 HTGIIASISNDNPPLISCVDDERIEF------QDGD--LVVFS-----EVHGMTELNDGKPRKVKNARPYSFSI-D---- 327 (1104)
Q Consensus 266 ~~~~i~~i~~~~~~lv~~~~~~~h~~------~dgd--~v~f~-----ev~gm~~ln~~~~~~i~~~~~~~~~i-~---- 327 (1104)
.+..+..|.+..-+-++|+-..+|.+ .+++ +..-. .-+.|++-....++..+.....+..+ +
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~ 242 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKN 242 (603)
T ss_pred CcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhc
Confidence 67788888877777888876555433 1111 11110 11112100000001000000000000 0
Q ss_pred -------cCccccc---cccc--CCeEEEeecCeeecccchhhhhcCC-CC--ccccc--------cccCCCcchHHHHH
Q 001301 328 -------EDTTNYS---AYEK--GGIVTQVKQPKIINFKPLREALKDP-GD--FLLSD--------FSKFDRPPVLHLAF 384 (1104)
Q Consensus 328 -------~dt~~f~---~y~~--gg~~~qvk~p~~~~f~sL~e~L~~p-~~--~~~~d--------~~k~~r~~~l~~~~ 384 (1104)
.++.-|. .|.. ...|++.+.|..+.|......-..+ .. -..++ |+--.....+-.+.
T Consensus 243 ~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i 322 (603)
T KOG2013|consen 243 LDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSI 322 (603)
T ss_pred cCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHH
Confidence 0111121 1333 3468888888888766442211111 00 00111 11011122334444
Q ss_pred HHH-HHHHHHhCCCCCCCCHHH--HHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHH
Q 001301 385 QAL-DKFIQELGRFPVAGSEED--AQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVK 461 (1104)
Q Consensus 385 ~al-~~F~~~~gr~P~~~~~~D--a~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIK 461 (1104)
++| .+..+..+++-..++.+| +-+|++.|..+.... ..........++.+|......|+.+.|+|||+..-|.+|
T Consensus 323 ~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~i--f~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiK 400 (603)
T KOG2013|consen 323 QALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHI--FGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIK 400 (603)
T ss_pred HHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhh--hccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHH
Confidence 444 222222233333344444 445666555543321 112233345688999999999999999999999999999
Q ss_pred hhccCcccccceeeccC
Q 001301 462 ACSGKFHPLLQFFYFDS 478 (1104)
Q Consensus 462 aiTgKf~PI~q~l~fD~ 478 (1104)
.|+|+|.-.+..|++-.
T Consensus 401 vl~~~~~~~~~~f~~~~ 417 (603)
T KOG2013|consen 401 VLGGDFDDCNMIFLAKR 417 (603)
T ss_pred HhccchhcceeeEEccC
Confidence 99999999999888754
No 51
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.2e-29 Score=278.66 Aligned_cols=163 Identities=25% Similarity=0.398 Sum_probs=145.9
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 496 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 496 ~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
..||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..++||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 379999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhh-ccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFW-ENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
|+++++++++++||+++|+++...+.+++. .+++ .++|+||+|+|++.++..++++|+.+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999887775442 2333 57999999999999999999999999999999888777666
Q ss_pred -eEEEeCCcccccC
Q 001301 655 -TQMVIPHLTENYG 667 (1104)
Q Consensus 655 -v~v~ip~~t~~y~ 667 (1104)
.++-+-++...+.
T Consensus 161 p~~~~~~di~~t~~ 174 (268)
T PRK15116 161 PTQIQVVDLAKTIQ 174 (268)
T ss_pred CCeEEEEeeecccC
Confidence 3455666555554
No 52
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.96 E-value=5.4e-28 Score=261.73 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=184.8
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc--
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL-- 198 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l-- 198 (1104)
+|+|+|+||+|+|++|+|+++|||+|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||+++|+.+...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ----chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceecccc
Q 001301 199 ----TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASIS 274 (1104)
Q Consensus 199 ----~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i~ 274 (1104)
+++++++||+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++++..+....|+.....++.
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~-------- 150 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTLYPPQ-------- 150 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCCCCCC--------
Confidence 24689999999999999999999999999999 9999999999999998776432111111000000
Q ss_pred CCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEeecCeeeccc
Q 001301 275 NDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFK 354 (1104)
Q Consensus 275 ~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~p~~~~f~ 354 (1104)
+ ...-+
T Consensus 151 -------------------------------------~-------------------------------------~~p~C 156 (234)
T cd01484 151 -------------------------------------K-------------------------------------NFPMC 156 (234)
T ss_pred -------------------------------------C-------------------------------------CCCcc
Confidence 0 00001
Q ss_pred chhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccccccCHHHHH
Q 001301 355 PLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLC 434 (1104)
Q Consensus 355 sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~ 434 (1104)
+++. .| + ..-|....|.+.|+ .+.++.+.+.+.|+...+++++ ..++...++
T Consensus 157 ti~~---~P------------~-~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i---~~~~~~~~~ 208 (234)
T cd01484 157 TIAS---MP------------R-LPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNI---RGVTYFLTK 208 (234)
T ss_pred ccCC---CC------------C-CchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCC---CCcCHHHHH
Confidence 1111 12 1 12577777777775 3567888899999988888764 567888999
Q ss_pred HHHhhccCccCchhhhhcchhhHHH
Q 001301 435 HFAFGARAVLNPMAAMFGGIVGQEV 459 (1104)
Q Consensus 435 ~~~~~~~~el~PvaA~iGGiaAQEV 459 (1104)
.++...-+.++.+.|+++|+++-|+
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~ 233 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEV 233 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhh
Confidence 9999999999999999999999886
No 53
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.96 E-value=2.3e-28 Score=279.24 Aligned_cols=151 Identities=26% Similarity=0.386 Sum_probs=142.8
Q ss_pred HHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc--chH
Q 001301 99 EDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG--KNR 174 (1104)
Q Consensus 99 ~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG--k~K 174 (1104)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3699999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 175 ALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 175 aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
|++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999887764 468899999999999999999999999999 999999999999987764
Q ss_pred c
Q 001301 251 F 251 (1104)
Q Consensus 251 ~ 251 (1104)
.
T Consensus 160 ~ 160 (339)
T PRK07688 160 I 160 (339)
T ss_pred C
Confidence 3
No 54
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=278.63 Aligned_cols=151 Identities=25% Similarity=0.428 Sum_probs=142.7
Q ss_pred HHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc--chH
Q 001301 99 EDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG--KNR 174 (1104)
Q Consensus 99 ~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG--k~K 174 (1104)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 3699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 175 ALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 175 aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
|++++++|+++||+++|+++...++. ++++++|+||+|.|+.+.+..+|++|++++ +|+|++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999877753 568899999999999999999999999999 999999999999998765
Q ss_pred c
Q 001301 251 F 251 (1104)
Q Consensus 251 ~ 251 (1104)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 4
No 55
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=1.7e-28 Score=265.28 Aligned_cols=155 Identities=31% Similarity=0.424 Sum_probs=139.7
Q ss_pred cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHH
Q 001301 506 FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 585 (1104)
Q Consensus 506 ~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~ 585 (1104)
+|.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc-eEEEeCCccc
Q 001301 586 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 664 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~-v~v~ip~~t~ 664 (1104)
++||+++|+++...+.+++.. .-+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. .++-+.++..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988865431 223357999999999999999999999999999999988888765 6667777666
Q ss_pred ccCc
Q 001301 665 NYGA 668 (1104)
Q Consensus 665 ~y~~ 668 (1104)
.+.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 5544
No 56
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=1.8e-28 Score=300.43 Aligned_cols=182 Identities=24% Similarity=0.336 Sum_probs=157.2
Q ss_pred cceeeccCCCCCCCCCCCCCCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcc-cccCCCcceE
Q 001301 471 LQFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMG-VSCGNQGKLT 549 (1104)
Q Consensus 471 ~q~l~fD~~e~lp~~~~~~~~~~~~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~G-v~~~~~g~i~ 549 (1104)
..|.||=--..+- .-++++++. ..||+||+.+||.++|++|++++|+||||| +||.++.+||++| | |+|+
T Consensus 65 ~~w~~~pw~~~~v-~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~ 135 (722)
T PRK07877 65 GRWVYYPWRRTVV-HLLGPREFR--AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-----GELR 135 (722)
T ss_pred CcEEEecchhhee-ecCCHHHhh--HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC-----CeEE
Confidence 3688886443332 123444443 389999999999999999999999999997 9999999999999 6 9999
Q ss_pred EecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHH
Q 001301 550 ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNAR 629 (1104)
Q Consensus 550 iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR 629 (1104)
|+|+|.||.|||||| +|+..|||++|+++++++++++||+++|+++..++++++. ++|++++|+||||+||+++|
T Consensus 136 lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R 210 (722)
T PRK07877 136 LADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVK 210 (722)
T ss_pred EEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHH
Confidence 999999999999999 5899999999999999999999999999999999997553 57889999999999999999
Q ss_pred HHHhhcccccccceEecccCCcccceE---E-EeCCcccccCcC
Q 001301 630 LYIDQRCLYFQKPLLESGTLGAKCNTQ---M-VIPHLTENYGAS 669 (1104)
Q Consensus 630 ~~i~~~c~~~~~pli~~g~~G~~G~v~---v-~ip~~t~~y~~~ 669 (1104)
..+|+.|+++++|+|.++..+ |++. + +.| .++||.|-
T Consensus 211 ~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 211 VLLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 999999999999999887555 6542 2 345 68999883
No 57
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=2.7e-28 Score=261.59 Aligned_cols=156 Identities=28% Similarity=0.384 Sum_probs=140.3
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 496 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 496 ~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
+.-|+++...||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||+++ ++|+|++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~ 81 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMP 81 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCCh
Confidence 345667778899999999999999999999999999999999999 9999999999999999999976 6799999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc-ccceEecccCCcccc
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCN 654 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~-~~pli~~g~~G~~G~ 654 (1104)
|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||..+|.++++.|++. ++|+|.++..+..|+
T Consensus 82 Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 82 KVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 999999999999999999999988875432 467899999999999999999999999999 999998876777777
Q ss_pred eEEEeCC
Q 001301 655 TQMVIPH 661 (1104)
Q Consensus 655 v~v~ip~ 661 (1104)
+..+.|.
T Consensus 158 ~~~~~~~ 164 (212)
T PRK08644 158 SNSIKTR 164 (212)
T ss_pred ceEEEec
Confidence 6655553
No 58
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=5.2e-28 Score=306.13 Aligned_cols=164 Identities=22% Similarity=0.329 Sum_probs=151.4
Q ss_pred hHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCC-----ceEEEEeCCccCcccCccccccCcCcccc
Q 001301 98 DEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGV-----KSVTLHDEGVVELWDLSSNFIFSEDDVGK 172 (1104)
Q Consensus 98 d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGV-----g~itLvD~d~V~~sdL~rqf~~~~~diGk 172 (1104)
..+|||||+++||.++|++|++++|+|+|+||+|||++|||+++|| |+|+|+|.|.|+.+||+||||++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4689999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeecccc--------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 173 NRALASIQKLQELNNAVAISALTTELT--------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 173 ~Kaea~~~~L~eLNp~V~V~~~~~~l~--------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
+||++++++++++||.++|+++...++ ++++.++|+||+|.|+.+.+..+++.|+.++ +|+|.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999987663 3578999999999999999999999999999 999999999999
Q ss_pred EEEEeecCCceEEecCCCC
Q 001301 245 GNIFCDFGPEFTVFDVDGE 263 (1104)
Q Consensus 245 G~vf~d~g~~f~v~d~~ge 263 (1104)
|++.+..+....+++...+
T Consensus 556 G~v~v~ip~~te~y~~~~d 574 (1008)
T TIGR01408 556 GNTQVVVPHLTESYGSSRD 574 (1008)
T ss_pred eeEEEEeCCCcCCCCCCCC
Confidence 9999887654434444433
No 59
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.95 E-value=1.4e-27 Score=263.75 Aligned_cols=158 Identities=32% Similarity=0.435 Sum_probs=149.0
Q ss_pred CCchhHHHHhhhhhccC--HHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAVYG--RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G--~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.+..+.+||+||+++|+ .++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 45778999999999965 4459999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||+++++.|+++||.+++..+...++. +++.++|+|++|.|+++.+..+|++|++++ +|++++++.|+.|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999887754 578899999999999999999999999999 999999999999999
Q ss_pred EeecCC
Q 001301 248 FCDFGP 253 (1104)
Q Consensus 248 f~d~g~ 253 (1104)
++..+.
T Consensus 161 ~~~~~~ 166 (254)
T COG0476 161 TVIIPG 166 (254)
T ss_pred EEEecC
Confidence 998765
No 60
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=6e-28 Score=241.33 Aligned_cols=135 Identities=33% Similarity=0.643 Sum_probs=122.7
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
+++||+|+|+||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||+++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEE
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMV 658 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ 658 (1104)
++...+.++.. .++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|+++.+
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~ 135 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV 135 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence 99998853221 4677899999999999999999999999999999999999999998653
No 61
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=263.13 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=160.9
Q ss_pred CCCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcc
Q 001301 93 NPSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 170 (1104)
Q Consensus 93 ~~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di 170 (1104)
..+..+..||+|||.+ +|..||.+|++++|||||+||||+..+..|+.+|||+|.|+|.|+|+.+||.||.+++++.+
T Consensus 38 ~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~v 117 (427)
T KOG2017|consen 38 GLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARV 117 (427)
T ss_pred CCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhh
Confidence 3667889999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEE
Q 001301 171 GKNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 171 Gk~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 246 (1104)
|+.||++++..++++||+|+|..+...++. +.+++||||++|+|+..+|..|++.|...| +|+|+++..++.|+
T Consensus 118 g~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EGQ 195 (427)
T KOG2017|consen 118 GMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEGQ 195 (427)
T ss_pred hhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Ccccccccccccce
Confidence 999999999999999999999999998865 478999999999999999999999999999 99999999999998
Q ss_pred EEe---ecCCceEEecCCCCCC
Q 001301 247 IFC---DFGPEFTVFDVDGEEP 265 (1104)
Q Consensus 247 vf~---d~g~~f~v~d~~ge~p 265 (1104)
+.+ +-|++|.|+-+++.+|
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~ 217 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPP 217 (427)
T ss_pred eEEeecCCCceeeecCCCCcCh
Confidence 844 5688999888876654
No 62
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=2.8e-27 Score=260.03 Aligned_cols=143 Identities=20% Similarity=0.325 Sum_probs=133.3
Q ss_pred CchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchH
Q 001301 95 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR 174 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K 174 (1104)
++...+||+||.++||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+|+|++|
T Consensus 6 ~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~K 85 (268)
T PRK15116 6 SDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAK 85 (268)
T ss_pred CHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhh-cCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 175 ALASIQKLQELNNAVAISALTTELTK----EKL-SDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 175 aea~~~~L~eLNp~V~V~~~~~~l~~----e~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
|++++++++++||+++|+.+...+++ +++ .+||+||+|.|+...+..|+++|++++ +|||+++
T Consensus 86 ve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 99999999999999999998876654 244 479999999999999999999999999 9999864
No 63
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=8.1e-28 Score=252.22 Aligned_cols=161 Identities=26% Similarity=0.387 Sum_probs=145.6
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
...||.|..+++|.++.++|++++|+|||+||+||++++.|||+|+ |+|+|||+|.|.++|+|||.-....+||+
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhccc
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999988899999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++++.+||+++|+++...+++++.+ +-+..++|+||||.|++.++..+-.+|+.+++|+|.+|..|.+-.
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~D 160 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLD 160 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCC
Confidence 99999999999999999999999999987643 334568999999999999999999999999999998776665544
Q ss_pred -eEEEeCCcc
Q 001301 655 -TQMVIPHLT 663 (1104)
Q Consensus 655 -v~v~ip~~t 663 (1104)
+++-+-+++
T Consensus 161 PTri~v~Dis 170 (263)
T COG1179 161 PTRIQVADIS 170 (263)
T ss_pred CceEEeeech
Confidence 555555543
No 64
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=247.85 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=205.8
Q ss_pred cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC
Q 001301 109 YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA 188 (1104)
Q Consensus 109 ~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~ 188 (1104)
-+.|..+-|.+++|||||+||+|+|++|||+++|.+.++++|.|.++.+||+|||+|+++|||++||+++++.++...|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeccc---chhhhcCCceEEEecCCHhHhhhHHHHHHHcCC--------CcceEEeeecceeEEEEeecCCceEE
Q 001301 189 VAISALTTEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQP--------PIAFIKSEVRGLFGNIFCDFGPEFTV 257 (1104)
Q Consensus 189 V~V~~~~~~l---~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~--------~ipfI~~~~~G~~G~vf~d~g~~f~v 257 (1104)
+.|..+...+ +.+|+++|++||+..|+.+.|.+||....+... -||+|.+++.|+-|.+.+..+.--.|
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999987765 558999999999999999999999986654311 16999999999999999988643122
Q ss_pred e----cCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccc
Q 001301 258 F----DVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNY 333 (1104)
Q Consensus 258 ~----d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f 333 (1104)
+ |..+++- ...+..|.+ .|+-++....|
T Consensus 190 ieCtldlyppqv-s~P~CTiAn------------------------------------tPRlpEHciEy----------- 221 (422)
T KOG2015|consen 190 IECTLDLYPPQV-SYPMCTIAN------------------------------------TPRLPEHCIEY----------- 221 (422)
T ss_pred HHhHHhhcCccc-CcccceecC------------------------------------CCCCchHhhhh-----------
Confidence 2 1111110 001111100 11111111111
Q ss_pred cccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhC-CCCCC-CCHHHHHHHHH
Q 001301 334 SAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELG-RFPVA-GSEEDAQKIIS 411 (1104)
Q Consensus 334 ~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~g-r~P~~-~~~~Da~~l~~ 411 (1104)
+.+.+|.+.+. ..|.. .+.++.+.+++
T Consensus 222 ---------------------------------------------------v~liqwpe~~~~g~~~~gdd~~hI~wi~e 250 (422)
T KOG2015|consen 222 ---------------------------------------------------VKLIQWPELNPFGVPLDGDDPEHIEWIVE 250 (422)
T ss_pred ---------------------------------------------------hhhhcchhhCccCCCCCCCCHHHHHHHHH
Confidence 11111111110 12322 34678888888
Q ss_pred HHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCC
Q 001301 412 LFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 482 (1104)
Q Consensus 412 ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~l 482 (1104)
-+.+..+++. ...++..++.-+....-+.++.+.|+|++..|-|++|++|.-+.|++||+.|.+.++.
T Consensus 251 r~~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ 318 (422)
T KOG2015|consen 251 RSNERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGI 318 (422)
T ss_pred HHHHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccce
Confidence 7777777664 3346777777777777778888899999999999999999999999999999999885
No 65
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.94 E-value=8.2e-27 Score=271.39 Aligned_cols=156 Identities=27% Similarity=0.368 Sum_probs=146.5
Q ss_pred CCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.+..+.++|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++++|||
T Consensus 108 ~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG 187 (376)
T PRK08762 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVG 187 (376)
T ss_pred CCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCC
Confidence 334556899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||++++++|+++||+++|+.+...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++
T Consensus 188 ~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v 265 (376)
T PRK08762 188 QPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQV 265 (376)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999887764 467899999999999999999999999999 999999999999998
Q ss_pred Eeec
Q 001301 248 FCDF 251 (1104)
Q Consensus 248 f~d~ 251 (1104)
..-.
T Consensus 266 ~~~~ 269 (376)
T PRK08762 266 SVFD 269 (376)
T ss_pred EEEe
Confidence 7643
No 66
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=291.12 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=144.1
Q ss_pred chhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHH
Q 001301 96 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 175 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 175 (1104)
.....+|+||+++||.++|+||++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||++||
T Consensus 309 ~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Ka 388 (989)
T PRK14852 309 AYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKL 388 (989)
T ss_pred HHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCC--HhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 176 LASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 176 ea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
++++++|+++||+|+|+++...+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||||.+++.|+.|++++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--IP~I~ag~~G~~g~v~v 466 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--IPVITAGPLGYSCALLV 466 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--CCEEEeeccccCeeEEE
Confidence 9999999999999999999887754 578899999999996 456788899999999 99999999999999886
Q ss_pred ec
Q 001301 250 DF 251 (1104)
Q Consensus 250 d~ 251 (1104)
..
T Consensus 467 ~~ 468 (989)
T PRK14852 467 FM 468 (989)
T ss_pred Ec
Confidence 54
No 67
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=4.9e-27 Score=248.48 Aligned_cols=121 Identities=31% Similarity=0.502 Sum_probs=112.6
Q ss_pred chhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHH
Q 001301 96 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 175 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 175 (1104)
+.+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||+++ |+|++||
T Consensus 3 ~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KA 81 (287)
T PTZ00245 3 DAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRG 81 (287)
T ss_pred HHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHH
Confidence 355789999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHhHh
Q 001301 176 LASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKA 219 (1104)
Q Consensus 176 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~ 219 (1104)
++++++|+++||+|+|+.+...++++ .+|++||++..+.+..
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rld~~--n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKLDGS--SGTRVTMAAVITEEDA 123 (287)
T ss_pred HHHHHHHHHHCCCcEEEEcccccCCc--CCceEEEEEcccHHHH
Confidence 99999999999999999998888763 4899999998776644
No 68
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=5e-26 Score=263.98 Aligned_cols=131 Identities=23% Similarity=0.363 Sum_probs=124.6
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-----ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-----KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-----g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+|+|||+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cccc--------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCC
Q 001301 196 TELT--------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 253 (1104)
Q Consensus 196 ~~l~--------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 253 (1104)
..++ ++++.++|+||.|.|+.+.+..+++.|+.++ +|+|.+++.|+.|++.+..+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7654 3678999999999999999999999999999 999999999999999887653
No 69
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=7.1e-27 Score=277.27 Aligned_cols=143 Identities=24% Similarity=0.322 Sum_probs=128.3
Q ss_pred HHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcc---ccchHHHHHHHHHH
Q 001301 510 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAAAL 586 (1104)
Q Consensus 510 ~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~di---G~~Ka~vaa~~l~~ 586 (1104)
..++|++++|+||||||+||.+|++|+++|| |+|+|||+|+|+.|||+||+||+.+|+ |++||++|+++|++
T Consensus 332 ~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~ 406 (664)
T TIGR01381 332 QLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR 406 (664)
T ss_pred hHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence 3489999999999999999999999999999 999999999999999999999999999 99999999999999
Q ss_pred hCCCcEEeeecccC-------Ccccc-ccc-----hhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 587 INPHLNTEALQIRA-------NPETE-NVF-----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 587 ~np~~~i~~~~~~v-------~~~~~-~~~-----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
+||+++|+++..++ +++.+ .+. -.++++++|+|++|+||.++|.+++.+|+.+++|+|+++ .|+.|
T Consensus 407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg 485 (664)
T TIGR01381 407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS 485 (664)
T ss_pred HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence 99999999998885 33211 111 036789999999999999999999999999999999975 89988
Q ss_pred ceEEE
Q 001301 654 NTQMV 658 (1104)
Q Consensus 654 ~v~v~ 658 (1104)
++.+.
T Consensus 486 ~lvmr 490 (664)
T TIGR01381 486 YVVMR 490 (664)
T ss_pred EEEEE
Confidence 87654
No 70
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=284.51 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=146.9
Q ss_pred CCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch
Q 001301 94 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
..+...++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCC--HhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 174 RALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.|+ .+.+..|++.|++++ ||+|.+++.|+.|++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccceE
Confidence 999999999999999999999988865 478899999999995 567889999999999 999999999999988
Q ss_pred Eeec
Q 001301 248 FCDF 251 (1104)
Q Consensus 248 f~d~ 251 (1104)
++..
T Consensus 176 ~~~~ 179 (679)
T PRK14851 176 LVFT 179 (679)
T ss_pred EEEc
Confidence 8654
No 71
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=1.9e-26 Score=232.73 Aligned_cols=133 Identities=37% Similarity=0.602 Sum_probs=126.0
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
+|+||||||+||+++++|+++|+ |+|+|+|+|.|+.+||+||++++.+|+|++|+++++++++++||+++++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 68999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEe
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVI 659 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~i 659 (1104)
..+.+.+. .++++++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88765332 46789999999999999999999999999999999999999999999876
No 72
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=1e-26 Score=262.95 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=139.9
Q ss_pred Ccchhhhhc---cC-HHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcc
Q 001301 497 SRYDAQISV---FG-SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 572 (1104)
Q Consensus 497 ~RYdrqi~l---~G-~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~di 572 (1104)
.||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 799999998 55 5589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred ccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHH--HhhcccccccceEecccCC
Q 001301 573 GQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLY--IDQRCLYFQKPLLESGTLG 650 (1104)
Q Consensus 573 G~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~--i~~~c~~~~~pli~~g~~G 650 (1104)
|++|+++|++++.++||.++|+.+. ++++++|+||+|+||+.+|.. +|+.|++.++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~~-------------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDELK-------------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeHH-------------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 9999999999999999999997642 457899999999999999965 9999999999999999999
Q ss_pred cccceEEEeCCcccccCcC
Q 001301 651 AKCNTQMVIPHLTENYGAS 669 (1104)
Q Consensus 651 ~~G~v~v~ip~~t~~y~~~ 669 (1104)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999998889889999995
No 73
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.93 E-value=2.7e-25 Score=222.23 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=120.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++|++||++++.+|+|++||++++++|+++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 198 LTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 198 l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 843 467899999999999999999999999999 99999999999999864
No 74
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=1.6e-25 Score=246.46 Aligned_cols=134 Identities=23% Similarity=0.309 Sum_probs=119.3
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCc--cccchHHHHHHHHHHhCCCcEEee
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~d--iG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
||+||||||+||++|++|+++|| |+|+|+|+|+|+.|||+||+||+.+| +|++||++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred ecccCCc--------------cccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEE
Q 001301 596 LQIRANP--------------ETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMV 658 (1104)
Q Consensus 596 ~~~~v~~--------------~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ 658 (1104)
+...+.- .+...+ .++++++|+||+|+||.++|..++.+|..+++|+|+ +..|+.|++.+.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l-~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmr 150 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRL-EELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMR 150 (307)
T ss_pred eeeeccccccccccccccccccCHHHH-HHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEE
Confidence 9876510 000001 467899999999999999999999999999999998 577888876553
No 75
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=3.2e-25 Score=239.89 Aligned_cols=132 Identities=27% Similarity=0.379 Sum_probs=123.9
Q ss_pred cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC
Q 001301 109 YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA 188 (1104)
Q Consensus 109 ~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~ 188 (1104)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecccch----hhh-cCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 189 VAISALTTELTK----EKL-SDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 189 V~V~~~~~~l~~----e~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
++|+.+...+++ +++ .+||+||+|.|+...+..|+++|++++ +|||+++..|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 999999987764 334 469999999999999999999999999 9999975544
No 76
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=2.7e-25 Score=231.45 Aligned_cols=142 Identities=28% Similarity=0.413 Sum_probs=128.1
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999955 67999999999999999999999999999
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc-ccceEecccCCcccceEEEeCCc--ccccCcC
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 669 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~-~~pli~~g~~G~~G~v~v~ip~~--t~~y~~~ 669 (1104)
.++.+++. .++++++|+||+|+||..+|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~~----~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENNL----EGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 88875331 468899999999999999999888888777 99999999899999988877654 3588875
No 77
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.92 E-value=5.6e-25 Score=235.99 Aligned_cols=145 Identities=23% Similarity=0.276 Sum_probs=131.2
Q ss_pred HHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHH
Q 001301 99 EDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 178 (1104)
Q Consensus 99 ~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~ 178 (1104)
++.+.++...||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||+|+ ++|+|++||+++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a 86 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEAL 86 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHH
Confidence 3455566666999999999999999999999999999999999999999999999999999999876 789999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHc-CCCcceEEeeecceeEE
Q 001301 179 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNH-QPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 179 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~ 246 (1104)
+++|+++||+++|+.+...+++ ++++++|+||+|.|+.+.+..+++.|+++ + +|+|.+...|.+|+
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 9999999999999999888765 57889999999999999999999999999 9 99999865444443
No 78
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.92 E-value=8.7e-25 Score=220.61 Aligned_cols=129 Identities=30% Similarity=0.435 Sum_probs=123.7
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 200 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 200 (1104)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++||+||||++++|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec
Q 001301 201 ----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 201 ----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578999999999999999999999999999 9999999999999999876
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=2e-24 Score=229.59 Aligned_cols=156 Identities=30% Similarity=0.437 Sum_probs=128.8
Q ss_pred hhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHH
Q 001301 501 AQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 580 (1104)
Q Consensus 501 rqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~va 580 (1104)
.+.+-+|.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+ |..+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 3445689999999999999999999999999999999999 99999999999999999997 56689999999999
Q ss_pred HHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc--ccceEecccCCcccce--E
Q 001301 581 ASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--QKPLLESGTLGAKCNT--Q 656 (1104)
Q Consensus 581 a~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--~~pli~~g~~G~~G~v--~ 656 (1104)
+++++++||.++++++..++++++. .++++++|+||+|+||.++|..+...|... ..+++.+ .|..|+. .
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~~----~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~ 153 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEENI----DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDAN 153 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCc
Confidence 9999999999999999998875432 467899999999999999999876666544 4455543 3333332 3
Q ss_pred EE-eCCc-ccccCc
Q 001301 657 MV-IPHL-TENYGA 668 (1104)
Q Consensus 657 v~-ip~~-t~~y~~ 668 (1104)
.+ .+.. ..||.|
T Consensus 154 ~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 154 SIKTRKISKHFYLC 167 (200)
T ss_pred eEEecccCCCEEEc
Confidence 33 3222 458888
No 80
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.91 E-value=3.1e-24 Score=225.37 Aligned_cols=144 Identities=20% Similarity=0.314 Sum_probs=135.7
Q ss_pred chhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHH
Q 001301 96 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 175 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 175 (1104)
+...+||.|.-+|+|.++++||++++|+|+|+||+|++++..|+++|||+|+|+|.|.|+.+|+|||.-....+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccchhh-----hcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeec
Q 001301 176 LASIQKLQELNNAVAISALTTELTKEK-----LSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVR 241 (1104)
Q Consensus 176 ea~~~~L~eLNp~V~V~~~~~~l~~e~-----l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~ 241 (1104)
+++++++.++||+++|.++...+++++ ..+||+||+|.|+......|-.+|++++ ||+|+++..
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~Ga 155 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSMGA 155 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeeccc
Confidence 999999999999999999999888753 4479999999999999999999999999 999996533
No 81
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.91 E-value=2.9e-24 Score=227.53 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=105.8
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccch
Q 001301 497 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 576 (1104)
Q Consensus 497 ~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~K 576 (1104)
.|||||+++||.++|+||++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.|||+|||++++ ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 79999999999999999999999999999999999999999999 999999999999999999999997 689999
Q ss_pred HHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCH
Q 001301 577 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV 626 (1104)
Q Consensus 577 a~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 626 (1104)
+++++++++++||.++|+++..++++. .+|++|+-+.-..
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~l 120 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccH
Confidence 999999999999999999999888652 2678888775443
No 82
>PRK07877 hypothetical protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=259.80 Aligned_cols=149 Identities=23% Similarity=0.277 Sum_probs=138.6
Q ss_pred CCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccc
Q 001301 94 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGK 172 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk 172 (1104)
..+...+||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|+|.|+.+||+|| +++..|+|+
T Consensus 82 ~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~ 159 (722)
T PRK07877 82 PREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGV 159 (722)
T ss_pred HHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhccc
Confidence 34677899999999999999999999999999996 99999999999996 9999999999999999998 579999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeecccchh----hhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 173 NRALASIQKLQELNNAVAISALTTELTKE----KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 173 ~Kaea~~~~L~eLNp~V~V~~~~~~l~~e----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
+||++++++|+++||+++|+++...++++ +++++|+||+|.|+++.+..+|+.|++++ ||+|+++..+ |++.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 99999999999999999999999988763 67889999999999999999999999999 9999988555 6664
No 83
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.90 E-value=1.4e-23 Score=249.49 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=141.0
Q ss_pred CCCCccCCCCCCCCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCcc
Q 001301 82 ADSSIMGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSS 161 (1104)
Q Consensus 82 ~~~~~~~~~~~~~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~r 161 (1104)
.++..|+|...+....|.++=---.|++..-+.++|++++|||+|+||||+++|++|+++|||+|||+|.|.|+.+||+|
T Consensus 301 dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~R 380 (664)
T TIGR01381 301 DLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVR 380 (664)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcccc
Confidence 34444555443333334333333345555566699999999999999999999999999999999999999999999999
Q ss_pred ccccCcCcc---cchHHHHHHHHHHHhCCCcEEEEeeccc-------ch--------------hhhcCCceEEEecCCHh
Q 001301 162 NFIFSEDDV---GKNRALASIQKLQELNNAVAISALTTEL-------TK--------------EKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 162 qf~~~~~di---Gk~Kaea~~~~L~eLNp~V~V~~~~~~l-------~~--------------e~l~~~dvVV~~~~~~~ 217 (1104)
|++++.+|+ |++||++++++|+++||.|+++.+...+ ++ ++++++|+|++|.|+.+
T Consensus 381 Q~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~e 460 (664)
T TIGR01381 381 QSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSRE 460 (664)
T ss_pred ccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHH
Confidence 999999999 9999999999999999999999987653 22 46889999999999999
Q ss_pred HhhhHHHHHHHcCCCcceEEeeecceeEEEEeecC
Q 001301 218 KAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFG 252 (1104)
Q Consensus 218 ~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g 252 (1104)
.|..++.+|..++ +|+|.+ ..|+.|++..-.|
T Consensus 461 sR~L~n~~c~~~~--kplI~a-AlGfdg~lvmrhG 492 (664)
T TIGR01381 461 ARWLPTVLCSRHK--KIAISA-ALGFDSYVVMRHG 492 (664)
T ss_pred HHHHHHHHHHHhC--CCEEEE-EeccceEEEEEec
Confidence 9999999999999 999998 5899999887533
No 84
>PRK06153 hypothetical protein; Provisional
Probab=99.89 E-value=1.7e-23 Score=237.03 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=118.5
Q ss_pred HHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCccccc-CcccCcccc--chHHHHHHHHH
Q 001301 509 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAA 585 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQf-Lf~~~diG~--~Ka~vaa~~l~ 585 (1104)
..|++|++++|+||||||+||.++..||++|| |+|+|+|+|.||.||||||+ +|+.+|+|+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 67999999999999999999999999999999 99999999999999999998 679999999 99999999999
Q ss_pred HhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccC
Q 001301 586 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 649 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~ 649 (1104)
++|| .|+++..++.+++. ..+.++|+||+|+|+.++|..++++|..+++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 56778778865432 356899999999999999999999999999999998863
No 85
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.1e-23 Score=220.89 Aligned_cols=154 Identities=22% Similarity=0.437 Sum_probs=144.5
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccch
Q 001301 497 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 576 (1104)
Q Consensus 497 ~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~K 576 (1104)
.-||||||+||.+.|++|+++||+|+|.+|+|.|++|||+++|| |++++.|.-.|....++-|||++.+++|+.|
T Consensus 12 alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 67999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceE
Q 001301 577 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 656 (1104)
Q Consensus 577 a~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~ 656 (1104)
+++..++++.+||.++|......+...+ .+||.+||+||-.--..+++..+|..|++++++++.+++.|+.|++.
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek~-----eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F 161 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEKD-----EEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAF 161 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhcc-----hhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeee
Confidence 9999999999999999999888777543 57899999998777788999999999999999999999999999987
Q ss_pred EEeC
Q 001301 657 MVIP 660 (1104)
Q Consensus 657 v~ip 660 (1104)
+-+-
T Consensus 162 ~dL~ 165 (331)
T KOG2014|consen 162 ADLQ 165 (331)
T ss_pred eehh
Confidence 6543
No 86
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.88 E-value=2.2e-22 Score=221.71 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=120.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCc--ccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDD--VGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~d--iGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+|+.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999987543
Q ss_pred -----------------c----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecC
Q 001301 199 -----------------T----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFG 252 (1104)
Q Consensus 199 -----------------~----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g 252 (1104)
+ +++++++|+|+++.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeC
Confidence 1 2578999999999999999999999999999 89998 58899999988665
No 87
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.87 E-value=3.2e-22 Score=226.57 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=133.6
Q ss_pred CCchhHHHHhhhhhc---cC-HHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCc
Q 001301 94 PSDIDEDLHSRQLAV---YG-RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDD 169 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l---~G-~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~d 169 (1104)
.+..+.+||+||+.+ +| .++|++|++++|+ +||+|+.++.+|+. |||+|+|+|+|.|+.+||+ ++++++|
T Consensus 47 l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~d 120 (318)
T TIGR03603 47 LTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEF 120 (318)
T ss_pred cCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhh
Confidence 334566899999999 56 5589999999999 99999999999999 9999999999999999999 8999999
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHhHhhh--HHHHHHHcCCCcceEEeeecceeEEE
Q 001301 170 VGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVE--FDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 170 iGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~--ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
||++||++++++|.++||.++|+.. .++++++|+||+|.|++..+.. +|++|.+++ +|||.+...|+.|++
T Consensus 121 iG~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv 193 (318)
T TIGR03603 121 ILKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFI 193 (318)
T ss_pred cCcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEE
Confidence 9999999999999999999999864 3578899999999999998855 999999999 999999999999998
Q ss_pred EeecC
Q 001301 248 FCDFG 252 (1104)
Q Consensus 248 f~d~g 252 (1104)
..-++
T Consensus 194 ~~~~P 198 (318)
T TIGR03603 194 TCTLP 198 (318)
T ss_pred EEEeC
Confidence 86553
No 88
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3e-22 Score=223.19 Aligned_cols=188 Identities=22% Similarity=0.354 Sum_probs=164.1
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 495 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 495 ~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
.+.|||||+|+||..+|..|..++||++|||++|||++|||++.|| |.++|+|.-.|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 4589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+||++..+.+++.||+++-...... +++-..-+..||++|++|+.+-=+.+.-..+.++|+..++||+.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~--p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEES--PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccC--hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 9999999999999999876655432 22222235689999999998877788888999999999999999999999999
Q ss_pred eEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhH
Q 001301 655 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 692 (1104)
Q Consensus 655 v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hc 692 (1104)
+++.+.. +.....+|......+..-..||++++|.
T Consensus 159 iRI~ikE---H~iieshPD~~~~DLRL~nPwpeLi~~v 193 (523)
T KOG2016|consen 159 IRISIKE---HTIIESHPDNPLDDLRLDNPWPELIEYV 193 (523)
T ss_pred EEEEeee---ccccccCCCCcccccccCCCcHHHHHHH
Confidence 9999865 4444556666667777888888888876
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.87 E-value=1.2e-21 Score=204.09 Aligned_cols=127 Identities=24% Similarity=0.264 Sum_probs=116.5
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 200 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 200 (1104)
+|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||++. .+|+|++||++++++|+++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 6899999999999999999999999999888765
Q ss_pred ----hhhcCCceEEEecCCHhHhhhHHHHHHHc-CCCcceEEeeecceeEEEEee
Q 001301 201 ----EKLSDFQAVVFTDISLEKAVEFDDYCHNH-QPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 201 ----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~vf~d 250 (1104)
++++++|+||+|.++.+.+..+++.|.++ + +|||.+...|.+|++...
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~~ 132 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNNI 132 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEEE
Confidence 57889999999999999998888877776 9 999999988888887643
No 90
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.86 E-value=4e-22 Score=210.19 Aligned_cols=168 Identities=26% Similarity=0.425 Sum_probs=146.9
Q ss_pred Ccchhhhhc--cCH-HHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 497 SRYDAQISV--FGS-KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 497 ~RYdrqi~l--~G~-~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
..|+|.++| .|. ...++|+...|.|||.||+||-.|..|.|+|+ |++++.|.|.||+.|+||-| |+.+..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCccccc
Confidence 579999988 443 57899999999999999999999999999999 99999999999999999977 7899999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCcc-ccccchhhh-------hccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPE-TENVFNDTF-------WENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 645 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~-~~~~~~~~f-------~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 645 (1104)
.+|+++|++.|..+||++.|+.|.-+++.- +..-|-+.+ -+..|+|+.|+||++||+.+|..|-..+..+.+
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmE 213 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWME 213 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999887641 111111111 124899999999999999999999999999999
Q ss_pred cccC--CcccceEEEeCCcccccCcCC
Q 001301 646 SGTL--GAKCNTQMVIPHLTENYGASR 670 (1104)
Q Consensus 646 ~g~~--G~~G~v~v~ip~~t~~y~~~~ 670 (1104)
+|.. ...||+|.++|+.|.||.|-+
T Consensus 214 SGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 214 SGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred ccCccccccceeEEecCCccceecccC
Confidence 9986 478999999999999999953
No 91
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.86 E-value=2.1e-21 Score=206.56 Aligned_cols=139 Identities=24% Similarity=0.274 Sum_probs=119.4
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh
Q 001301 106 LAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL 185 (1104)
Q Consensus 106 i~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL 185 (1104)
..-+|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+.+||+||+| ..+|+|++|+++++++|+++
T Consensus 8 ~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~i 86 (200)
T TIGR02354 8 VARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEI 86 (200)
T ss_pred HHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHH
Confidence 34479999999999999999999999999999999999999999999999999999975 66899999999999999999
Q ss_pred CCCcEEEEeecccchh----hhcCCceEEEecCCHhHhhhHHH-HHHHcCCCcceEEeeecceeEEEE
Q 001301 186 NNAVAISALTTELTKE----KLSDFQAVVFTDISLEKAVEFDD-YCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 186 Np~V~V~~~~~~l~~e----~l~~~dvVV~~~~~~~~~~~ln~-~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
||+++++++...++++ ++.++|+||.|.++.+.+..+++ +|+.++ .+++.+ ..|+.|+.+
T Consensus 87 np~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 87 NPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred CCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 9999999998888754 57789999999999998877654 555555 344333 367777664
No 92
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.84 E-value=1.4e-21 Score=170.78 Aligned_cols=66 Identities=48% Similarity=0.828 Sum_probs=55.9
Q ss_pred eecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcC
Q 001301 903 QFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 970 (1104)
Q Consensus 903 ~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~ 970 (1104)
+|||||+. |++||+|+|||||++|+||+.|++++++|+|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999987 9999999999999999999999999999999999999999999999999999999987
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-20 Score=201.10 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=140.3
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchH
Q 001301 498 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 577 (1104)
Q Consensus 498 RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka 577 (1104)
...|.+.+||.++++||+++=|+||||||+||+++-.|+|+|+ ++|.|||+|.|.+|.||||......|||.||+
T Consensus 56 qLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~ 130 (430)
T KOG2018|consen 56 QLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPKV 130 (430)
T ss_pred HHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCchH
Confidence 3457778899999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc-eE
Q 001301 578 TVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN-TQ 656 (1104)
Q Consensus 578 ~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~-v~ 656 (1104)
.++++.++++.|.++|++...-++.++++ +-++.+.|+|+||+||++++.-+-++|..+++++|.+-..+.+.. ++
T Consensus 131 ~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTr 207 (430)
T KOG2018|consen 131 MCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTR 207 (430)
T ss_pred HHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCce
Confidence 99999999999999999999988877653 234677999999999999999999999999999997666665554 45
Q ss_pred EEeCCc
Q 001301 657 MVIPHL 662 (1104)
Q Consensus 657 v~ip~~ 662 (1104)
+-+.++
T Consensus 208 v~v~Di 213 (430)
T KOG2018|consen 208 VNVADI 213 (430)
T ss_pred eehhhc
Confidence 545443
No 94
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-20 Score=222.36 Aligned_cols=152 Identities=23% Similarity=0.335 Sum_probs=143.0
Q ss_pred HHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCc-----eEEEEeCCccCcccCccccccCcCcccch
Q 001301 99 EDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVK-----SVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 99 ~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg-----~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
..|||-|++++|..-|+||.+.++++||+|++|||.+||++++||| .|++.|.|.++.|||+|||+|+..|||++
T Consensus 410 gsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 410 GSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKP 489 (1013)
T ss_pred cCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCch
Confidence 4599999999999999999999999999999999999999999995 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeccc--------chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 174 RALASIQKLQELNNAVAISALTTEL--------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l--------~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
|+++++.....+||+++|.++...+ +++|+.+.|+|..+.|+.+.|..++.-|.-+. +|++.+++.|.-|
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKG 567 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKG 567 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCcc
Confidence 9999999999999999999987654 45799999999999999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 001301 246 NIFCDFG 252 (1104)
Q Consensus 246 ~vf~d~g 252 (1104)
..-+..+
T Consensus 568 ntQVvvP 574 (1013)
T KOG2012|consen 568 NTQVVVP 574 (1013)
T ss_pred ceeEEec
Confidence 7666554
No 95
>PRK06153 hypothetical protein; Provisional
Probab=99.80 E-value=2e-19 Score=204.16 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=115.5
Q ss_pred HHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCcccc-ccCcCcccc--hHHHHHHHHHHHhCC
Q 001301 111 RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNF-IFSEDDVGK--NRALASIQKLQELNN 187 (1104)
Q Consensus 111 ~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf-~~~~~diGk--~Kaea~~~~L~eLNp 187 (1104)
.+.|+||++++|+||||||+|+.++..|+++||++|+|+|.|.|+.+||+||+ +++++|+|+ +||+++++++.++||
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 36799999999999999999999999999999999999999999999999998 568999999 999999999999998
Q ss_pred CcEEEEeecccchh---hhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeee
Q 001301 188 AVAISALTTELTKE---KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 188 ~V~V~~~~~~l~~e---~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
. |.++...++++ .+.++|+||+|.|+.+.+..|+++|++++ ||||.+++
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 4 56666666653 57899999999999999999999999999 99999764
No 96
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.1e-20 Score=195.87 Aligned_cols=145 Identities=23% Similarity=0.330 Sum_probs=132.5
Q ss_pred CCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch
Q 001301 94 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
+.++-.+...|++.++|.++|+||+++-|+|+|+||+|++++-.|+++||++|.|+|+|.|+.+.|+||-..+..|||.|
T Consensus 49 dd~lireqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~P 128 (430)
T KOG2018|consen 49 DDELIREQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTP 128 (430)
T ss_pred cHHHHHHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCc
Confidence 44556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----h-hhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeee
Q 001301 174 RALASIQKLQELNNAVAISALTTELTK----E-KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e-~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
|+.+++++++++.|+++|++...-++. + .+.+-|+||+|.|++++.+.|-++|+.++ +++|++..
T Consensus 129 K~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~G 198 (430)
T KOG2018|consen 129 KVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISSTG 198 (430)
T ss_pred hHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEeccC
Confidence 999999999999999999987765543 3 34467999999999999999999999999 99998653
No 97
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.76 E-value=2.6e-18 Score=186.64 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=115.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCC-----c-----eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN 186 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGV-----g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN 186 (1104)
-+.++|+|||+||+|++++++|+++|+ | +|+|+|+|.|+.+||+||+ +.+.|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 367899999999999999999999973 4 9999999999999999995 6678999999999999999888
Q ss_pred CCcEEEEeecccch-hhhcCCceEEEecCCHhHhhhHHHHHHH---cCCCcceEEeeecceeEEEEe
Q 001301 187 NAVAISALTTELTK-EKLSDFQAVVFTDISLEKAVEFDDYCHN---HQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 187 p~V~V~~~~~~l~~-e~l~~~dvVV~~~~~~~~~~~ln~~c~~---~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
.++++++...+++ +++.++|+||+|.|+.+.|..|++.|++ .+ +|++.+++.+..|+|.+
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 8899999887764 4567899999999999999999999988 24 69999999999988765
No 98
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.59 E-value=3.5e-15 Score=158.09 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=131.9
Q ss_pred CCchhHHHHhhhhhc--cC-HHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcc
Q 001301 94 PSDIDEDLHSRQLAV--YG-RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 170 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G-~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di 170 (1104)
..-.|.+-|||-+.| +| ....+|++...|.|+|.||+|+-+|..|.++|||++.|+|.|.|+..|++|- ||+++..
T Consensus 54 sEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~Qa 132 (422)
T KOG2336|consen 54 SEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQA 132 (422)
T ss_pred hhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccc
Confidence 445577889999888 66 4677899999999999999999999999999999999999999999999996 5577889
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEeecccch-h----h-----------hcCCceEEEecCCHhHhhhHHHHHHHcCCCcc
Q 001301 171 GKNRALASIQKLQELNNAVAISALTTELTK-E----K-----------LSDFQAVVFTDISLEKAVEFDDYCHNHQPPIA 234 (1104)
Q Consensus 171 Gk~Kaea~~~~L~eLNp~V~V~~~~~~l~~-e----~-----------l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip 234 (1104)
|.+|++++.+.|.++||+|.++++...++. + | -+..|+|+.|.|+++.|-.+|.+|-+.+ .-
T Consensus 133 GlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~ 210 (422)
T KOG2336|consen 133 GLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QT 210 (422)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hH
Confidence 999999999999999999999999887643 1 1 1236999999999999999999999998 66
Q ss_pred eEEeeecc--eeEEEEeecC
Q 001301 235 FIKSEVRG--LFGNIFCDFG 252 (1104)
Q Consensus 235 fI~~~~~G--~~G~vf~d~g 252 (1104)
|.-+++.. ..|.|....+
T Consensus 211 WmESGVSEnAVSGHIQ~i~P 230 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVP 230 (422)
T ss_pred HHHccCccccccceeEEecC
Confidence 77665443 4566655443
No 99
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.51 E-value=3e-15 Score=119.76 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.2
Q ss_pred CcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhc
Q 001301 661 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 705 (1104)
Q Consensus 661 ~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~ 705 (1104)
++|+||+|..+|+++++|+||+++||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999995
No 100
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.43 E-value=2e-13 Score=161.81 Aligned_cols=146 Identities=20% Similarity=0.249 Sum_probs=123.6
Q ss_pred Ccchhhhhcc------CHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccC
Q 001301 497 SRYDAQISVF------GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 570 (1104)
Q Consensus 497 ~RYdrqi~l~------G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~ 570 (1104)
+||..||..| |....++.+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 4556666799999999999999999999999999 99999999999 999999
Q ss_pred ccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccc---cceEe
Q 001301 571 NIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQ---KPLLE 645 (1104)
Q Consensus 571 diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~---~pli~ 645 (1104)
||+. ++.|++ +||+++|+.+.... .+.+ .+.++.+|+||...|+. .--+++|+.|++.+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7777 666555 99999999987522 2222 35678999999999954 55679999999999 67778
Q ss_pred cccCCcccceEEEeCCcccccCc
Q 001301 646 SGTLGAKCNTQMVIPHLTENYGA 668 (1104)
Q Consensus 646 ~g~~G~~G~v~v~ip~~t~~y~~ 668 (1104)
+|..++.|.+.. |+.|+|+.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 999999887655 999999998
No 101
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.39 E-value=5.7e-13 Score=151.77 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=133.2
Q ss_pred CCCccCCCCCCCCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccc
Q 001301 83 DSSIMGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSN 162 (1104)
Q Consensus 83 ~~~~~~~~~~~~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rq 162 (1104)
++..|+|...+....|-++=---.|+.-.-...++.+.++|+.|+|.+||.||.||+..||++||++|...|+.+|--||
T Consensus 304 Ls~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQ 383 (669)
T KOG2337|consen 304 LSDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQ 383 (669)
T ss_pred hhhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhh
Confidence 33345444333333333333333455555567899999999999999999999999999999999999999999999999
Q ss_pred cccCcCcc---cchHHHHHHHHHHHhCCCcEEEEeeccc-------c--------------hhhhcCCceEEEecCCHhH
Q 001301 163 FIFSEDDV---GKNRALASIQKLQELNNAVAISALTTEL-------T--------------KEKLSDFQAVVFTDISLEK 218 (1104)
Q Consensus 163 f~~~~~di---Gk~Kaea~~~~L~eLNp~V~V~~~~~~l-------~--------------~e~l~~~dvVV~~~~~~~~ 218 (1104)
-+++-+|. |++||++++++|++++|.++-+.+...+ . +++++..|+|++..|+.+.
T Consensus 384 sLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRES 463 (669)
T KOG2337|consen 384 SLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRES 463 (669)
T ss_pred hhhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchh
Confidence 99999997 4999999999999999998877765443 1 1468899999999999999
Q ss_pred hhhHHHHHHHcCCCcceEEeeecceeEEEEeecCC
Q 001301 219 AVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 253 (1104)
Q Consensus 219 ~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 253 (1104)
|..-.-+|..++ +-+| ....|+..|+..-.|.
T Consensus 464 RWLPtll~a~~~--KivI-NaALGFDsylVMRHG~ 495 (669)
T KOG2337|consen 464 RWLPTLLAAAKN--KIVI-NAALGFDSYLVMRHGT 495 (669)
T ss_pred hhhHHHHHhhhc--ceEe-eeecccceeEEEecCC
Confidence 988888888887 4444 4578999888877664
No 102
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.30 E-value=4e-12 Score=145.00 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=113.7
Q ss_pred HHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcc---ccchHHHHHHHHHH
Q 001301 510 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAAAL 586 (1104)
Q Consensus 510 ~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~di---G~~Ka~vaa~~l~~ 586 (1104)
..+++.+.|+++.|||.+||.+|++|..=|| .+||.+|..+|.-||--||.||+-+|- |++||++|+++|++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 4689999999999999999999999999999 999999999999999999999998886 59999999999999
Q ss_pred hCCCcEEeeecccCCc-------cc-cccc-----hhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 587 INPHLNTEALQIRANP-------ET-ENVF-----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 587 ~np~~~i~~~~~~v~~-------~~-~~~~-----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
|+|.++-+.+.-.|.- .. +... =.++.+..|+|+-.+|..++|..=.-.|...+|-+|++.
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA 482 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA 482 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence 9999987777654431 10 0000 035678999999999999999988888888888888754
No 103
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.14 E-value=3e-10 Score=135.20 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCchhHHHHhhhhhcc------CHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCc
Q 001301 94 PSDIDEDLHSRQLAVY------GRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSE 167 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~------G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~ 167 (1104)
.+....+||..||.++ |.+..++.++++|+|+|+||+|+.++.+|+.+|+++|..+|.|.+ .+|++|
T Consensus 98 L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR------ 170 (637)
T TIGR03693 98 LESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR------ 170 (637)
T ss_pred CCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH------
Confidence 4556679999999994 567777889999999999999999999999999999999999999 999999
Q ss_pred CcccchHHHHHHHHHHHhCCCcEEEEeecccch---hhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 168 DDVGKNRALASIQKLQELNNAVAISALTTELTK---EKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 168 ~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~---e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
||+. ++.+++ .||.|.|+.++...++ +.++++|+||+..+ ..+...++|+.|.+.| .|||-+-..|
T Consensus 171 --IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkeg--k~~IPai~~G 241 (637)
T TIGR03693 171 --IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEG--KGFIPAICLK 241 (637)
T ss_pred --HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcC--CCeEEEEEcc
Confidence 7766 555444 9999999998764333 56899999999887 5567899999999999 6666655555
Q ss_pred eeEE
Q 001301 243 LFGN 246 (1104)
Q Consensus 243 ~~G~ 246 (1104)
..+.
T Consensus 242 ~~~l 245 (637)
T TIGR03693 242 QVGL 245 (637)
T ss_pred ccee
Confidence 4443
No 104
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.28 E-value=2.9e-06 Score=84.70 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=98.1
Q ss_pred cCeEEEEcCChhhHHHHHHHH---HhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 119 ASNILISGMQGLGAEIAKNLI---LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLv---laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
...|.++|||-||.-+|-+|. +.|+.+|.++|...|++.|+-- ..--..+|.+|++-+ ++|..-.+.-+|++++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence 457999999999999999998 7899999999999999999832 223356899999875 4677778888999999
Q ss_pred cccchhhhcC--CceEEEecC---CHhHhhhHHHHHHHcCCCcceEEeeecceeEE
Q 001301 196 TELTKEKLSD--FQAVVFTDI---SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 196 ~~l~~e~l~~--~dvVV~~~~---~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 246 (1104)
+.++.+++.. =||||.|.. ..+....|.++|++.| +.-|+ +.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Tis--T~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTIS--TNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEee--cCceeec
Confidence 9998875432 288887753 6677788999999999 66665 7888886
No 105
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.25 E-value=5.4e-07 Score=79.16 Aligned_cols=50 Identities=38% Similarity=0.703 Sum_probs=36.8
Q ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCC
Q 001301 802 QFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKEN 856 (1104)
Q Consensus 802 ~fd~~~~~h~~fv~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (1104)
+||++|+.|++||+++|+|||++|||+ + .+...+.+++ +..+|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 4677888888 888999988764
No 106
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.67 E-value=4.6e-05 Score=69.84 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=50.5
Q ss_pred EEeCCCCcHHHHHHHHHHc---CCceeeeecCCceeeccCCc----chhhcccCcHHHHHHh-----hhcCCCCC
Q 001301 1013 WILRDNPTLRQLLQWLQDK---GLNAYSISYGSCLLFNSMFP----RHKERMDKKVVDLVRD-----VAKAELPP 1075 (1104)
Q Consensus 1013 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g~~~LY~~~~~----~~~~~l~~~l~~l~~~-----v~~~~~~~ 1075 (1104)
++++.+.||++||+.+.++ ++..++|+.+.+-||....| .++.||+|+|.||+.+ |+++.+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g~ei~VtD~~lp~ 75 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDGEEITVTDPTLPI 75 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSSEEEEEEETTESS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCCCEEEEECCCCce
Confidence 3567789999999999998 88899999999999999876 5578999999999865 55555553
No 107
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.46 E-value=0.0015 Score=70.31 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=71.5
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|||.|.+|...++.|...| .+|++++.+.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478899999999999999999999999 68999975311 1222333323455556
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeee
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
..+.++.+.++|+||.++++.+....+.+.| +.+ +++-.++.
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~--~lvn~~d~ 102 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDL-PEN--ALFNVITD 102 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHH-HhC--CcEEECCC
Confidence 6667778899999999999988888999999 446 55544443
No 108
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.39 E-value=0.0021 Score=69.29 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|||.|.+|..-++.|...|. .||+++++.- +.+.++-..-+|+.+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~ 59 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLA 59 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEe
Confidence 3678899999999999999999999996 8999987421 1122222222567777
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
..+..+.+.++++||.++++.+....+...|++.+ +++-.++--....++|
T Consensus 60 ~~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 60 RCFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEEE
Confidence 77777788999999999988888889999999999 7776666555544444
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.23 E-value=0.0011 Score=66.43 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=58.7
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..||+.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36889999999999999999999999999999998742 23676666666 55555554
Q ss_pred ecccchhhhcCCceEEEecCC
Q 001301 195 TTELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~ 215 (1104)
...=-.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 432222567899999998864
No 110
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.21 E-value=0.00037 Score=74.33 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=48.2
Q ss_pred CHHHHHHHhcCcEEEEcCCcchHH-HHHHHHhcccccC-CCcceEEe---cCCcccccCcccccC
Q 001301 507 GSKLQKKLEEAKVFVVGSGALGCE-FLKNLALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQFL 566 (1104)
Q Consensus 507 G~~~q~kL~~~~VlvvG~GgiG~e-vlknLa~~Gv~~~-~~g~i~ii---D~D~Ie~sNLnRQfL 566 (1104)
+...+++|++.+|.|+|.|+.|+. ++..|+.+|++.. ....++|+ |++..+++|+|||++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 346789999999999999999999 9999999999443 23444777 777777777777775
No 111
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00091 Score=77.98 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=69.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.+|+|+|||++|+.++.+||+.|. ++|+|.|.. +. .++++...... ++++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs---------------------~~--~~~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRS---------------------KE--KCARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCC---------------------HH--HHHHHHhhccc-cceeE
Confidence 589999999999999999999998 899999722 11 12222222111 55565
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 648 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~ 648 (1104)
.-.+.+.. .+ .+.++++|+||+|+.-.-.+ .+-+.|.+.++++++...
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSY 100 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEccc
Confidence 55444321 11 35678899999999988777 556689999999997443
No 112
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0023 Score=74.72 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=71.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc-
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL- 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l- 198 (1104)
.+|+|+|+|++|+.+|.+|+..|.+.|++.|... ..++++.+.... ++++..-+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5799999999999999999999999999998521 122233333221 444444333
Q ss_pred ----chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 199 ----TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 199 ----~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
..+.++++|+||.+....-.. .+-++|-+.| ++++.+..+.-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 236889999999998655544 7888999999 899987655544
No 113
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.04 E-value=0.002 Score=72.87 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=59.7
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 556899999999999999999999999999999864 258999999998888765553321
Q ss_pred ccchhhhcCCceEEEec
Q 001301 197 ELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~ 213 (1104)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456788888876
No 114
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.99 E-value=0.0017 Score=62.04 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=65.4
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|||.|.+|..=++.|..+| .+++++.++. . ..+ ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~-------------------------~~~---~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E-------------------------FSE---GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H-------------------------HHH---TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h-------------------------hhh---hHHH--HHh
Confidence 478899999999999999999999999 5999998754 0 000 2222 334
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
..+. +.++++++|+.++++.+....+.+.|++++ +|+-.++
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D 92 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVD 92 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECC
Confidence 4454 668899999999999998899999999999 7766544
No 115
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.96 E-value=0.011 Score=60.89 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=67.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|+|.|.+|...++.|...|. .+++++++.. +.+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhcc---CcEEEe
Confidence 5788999999999999999999999997 8888865422 1122221 234556
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
..+.++.+.++|+||.++++.+....+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 66777788999999999999888888899998854
No 116
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.94 E-value=0.0021 Score=72.78 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=58.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+..++|+|+|+||.|..++..|+.+|+ ++|+|+|.+ ..|++.+++.+....+.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEE
Confidence 566899999999999999999999999 899999855 25888888888777776554
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
..... + .+...++|+||+|+
T Consensus 181 ~~~~~--------~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD--------L--AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc--------h--HhhhCCCCEEEECC
Confidence 33211 0 12346799999996
No 117
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.93 E-value=0.0022 Score=64.55 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=95.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.-.|.++|||-+|--++-+|... ..|.-.+|.++|...||..++----+ -.-+|.+|++-+++ +-.-.+.-+|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~r-l~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKR-LGRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHH-hCcCCCCceeec
Confidence 34699999999999999887653 33434899999999999998743222 24689999998654 445567779999
Q ss_pred ecccCCccccccchhhhhccCCEEEEcc---CCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNAL---DNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~al---Dn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
..+.++.++.+.+ .+ |+|+-|. |..+.-..+..+|.+.+..-| +|.|..|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 9999998776544 33 8777664 778888899999999999888 35555553
No 118
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.84 E-value=0.015 Score=63.20 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=77.5
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
++++.+|||||.|.+|..=++.|..+|. +||++-++.. +.++++-..-+|+...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5668899999999999999999999995 7999866421 1122222233467777
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
..+.++.+.++++||.|+++.+.-..+.+.|++++ +++..+.--..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 77888889999999999999999999999999999 77776654443
No 119
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.59 E-value=0.0074 Score=64.90 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=63.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|++++|+|||.|.+|...++.|...|. +|+|++.+. .+ .+.++.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~-------------------~l~~l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE-------------------NLVKLVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH-------------------HHHHHHhCCC
Confidence 4788999999999999999999999996 899996431 00 1111111112
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
+...... |....+.++|+||.|+|+.+.-..+...| ..++++-
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn 98 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFN 98 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence 3222211 22345678999999999999999999999 4566543
No 120
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.58 E-value=0.0047 Score=62.00 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=54.8
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
..|++++|+|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 36889999999999999999999999999 8899985 21 24566555555 333
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccCCH
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 626 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 626 (1104)
.+....- +.+ ...+.++|+||+|+.-.
T Consensus 60 ~~~~~~~------~~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPL------EDL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEG------GGH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeH------HHH--HHHHhhCCeEEEecCCC
Confidence 3333221 011 13467899999998643
No 121
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.16 E-value=0.0089 Score=57.16 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=62.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|++.+|+|||.|.+|..=++.|...|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4788999999999999999999999996 999998775 1000 1122
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 645 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 645 (1104)
+ ....+ . ..+.++++|+.|+|+......+-+.|...++|+-.
T Consensus 49 ~--~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 49 L--IRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp E--EESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred H--HhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 2 22211 1 23567899999999999999999999999998764
No 122
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.09 E-value=0.017 Score=62.20 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=69.9
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
|++++|+|||.|.+|..-++.|...|. +++|++.+.- ..+. .+.+. -+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~---------------------~~l~-~l~~~---~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE---------------------SELT-LLAEQ---GGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC---------------------HHHH-HHHHc---CCE
Confidence 678899999999999999999999996 9999986521 0011 11111 144
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
+.+...+. ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 44443332 23467899999999999899999999999999985444
No 123
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.99 E-value=0.025 Score=58.40 Aligned_cols=85 Identities=15% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|++.+|+|||.|.+|...++.|...|. +++||+.+..+. +.+. +.+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~i~ 57 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PYIT 57 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cCcE
Confidence 4788999999999999999999999997 999997653211 1111 1122
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
..... |....+.++|+||.|+|+.+....+...|...
T Consensus 58 --~~~~~--------~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 58 --WKQKT--------FSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred --EEecc--------cChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 22221 22344678999999999999999998888764
No 124
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.81 E-value=0.024 Score=64.17 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=52.5
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+++|+|+|+||.|..++-.|+..|+++|+|++.+ ..||+++++.+.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEecCH
Confidence 446899999999999999999999999999999753 1378887777654444322222110
Q ss_pred ccchhhhcCCceEEEec
Q 001301 197 ELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~ 213 (1104)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012344567777665
No 125
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.80 E-value=0.048 Score=58.95 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=77.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|.+++|+|+|.|.+|..=++.|+.+|. +++++-++. ... ...+.+-+ ++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~--~~e--------------------l~~~~~~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF--EPE--------------------LKALIEEG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc--cHH--------------------HHHHHHhc---Ccchhh
Confidence 4778999999999999999999999998 566665432 011 11222223 355566
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
..+..+.+..+++||.++++.+...++.+.|++++ +|+-.++--.+.-++|
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~~~f~~ 113 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPELCDFIF 113 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCcccCceec
Confidence 66777777889999999999999999999999999 7776666555533333
No 126
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.78 E-value=0.087 Score=63.79 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=79.8
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|||.|.++..=++.|..+|. +||++-++.. +.+.++-..-+|+...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888754311 1233333344577777
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
..+.++.++++++||.|+++.+...+|.+.|++.+ +++-.++.-....++
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~~~~f~ 112 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPKAASFI 112 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcccCeEE
Confidence 77888889999999999999999999999999999 666665544433333
No 127
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.38 E-value=0.022 Score=67.28 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=63.4
Q ss_pred EEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeecc
Q 001301 519 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 598 (1104)
Q Consensus 519 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~ 598 (1104)
|+|+|+|.+|+.+++.|++.+-. .++++.|.+. .|++.+++.+ ...+++....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999998840 3889987443 2222222222 2345566655
Q ss_pred cCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEec
Q 001301 599 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 599 ~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
.+.+.. .+ .++++++|+||+|+... .-..+-+.|.+.++++++.
T Consensus 54 d~~~~~-~l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPE-SL--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHH-HH--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHH-HH--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 555322 22 46789999999999877 5567888999999999993
No 128
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.22 E-value=0.06 Score=54.55 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=54.3
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCce-EEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKS-VTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~-itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
||.|||+ |.+|+.+|-.|+..|+.+ |.|+|. ...+++..+.-|....+..........-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~~ 62 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI-------------------NEDKAEGEALDLSHASAPLPSPVRITSG 62 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES-------------------SHHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEecc-------------------Ccccceeeehhhhhhhhhcccccccccc
Confidence 7999999 999999999999999854 999985 2236666666666665444332222223
Q ss_pred chhhhcCCceEEEecC
Q 001301 199 TKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+++.|+||.+..
T Consensus 63 ~~~~~~~aDivvitag 78 (141)
T PF00056_consen 63 DYEALKDADIVVITAG 78 (141)
T ss_dssp SGGGGTTESEEEETTS
T ss_pred cccccccccEEEEecc
Confidence 4567889999999875
No 129
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.21 E-value=0.056 Score=58.89 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=70.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.+++.+|+|||.|.++..=++.|...|. +|+||-++.- + ++ .+ + ..++.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~-el--------~~-l-~~~~~-- 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K-EF--------LD-L-KKYGN-- 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H-HH--------HH-H-HhCCC--
Confidence 4568899999999999999999999986 9999966521 0 00 00 1 11233
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 648 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~ 648 (1104)
|+.....+ ....+.++++||.|+|+.+.-..|...|...++++..+..
T Consensus 71 i~~~~r~~--------~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNY--------DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCC--------ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 44444333 2345678999999999999999999999999888775443
No 130
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.11 Score=62.69 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=78.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+.- ...+...+.|.+++ +.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999886431 01112223343332 334444
Q ss_pred ccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001301 197 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
...++...++|+||.+.... ....+-..|+++| +|++.-.. ....... .+--.|.=++|......++..+
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~-~~~~~~~~a~~~~--i~~~~~~~--~~~~~~~--~~vI~ITGS~GKTTt~~~l~~i 129 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVP-LDSPPVVQAHKKG--IEVIGEVE--LAYRFSK--APIVAITGTNGKTTTTTLLGEI 129 (450)
T ss_pred CcchhHhhcCCEEEECCCCC-CCCHHHHHHHHCC--CcEEeHHH--HHHhhcC--CCEEEEeCCCchHHHHHHHHHH
Confidence 44445677899999877532 3344777889999 88876221 1111111 2333444456666555555544
No 131
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.86 E-value=0.093 Score=59.66 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=44.6
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEE
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 191 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V 191 (1104)
+++++|+|+|+||+|..++..|+..|+++|+|++.+.- ...|++.+++.+.+..+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 56789999999999999999999999999999875210 013677777777655554443
No 132
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.85 E-value=0.056 Score=61.18 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=52.9
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee-
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT- 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~- 195 (1104)
++.++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++.+..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~~---~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVGV---ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcCc---ceeccc
Confidence 567899999999999999999999999999998742 2377777776644321 21111
Q ss_pred -cccchhhhcCCceEEEecC
Q 001301 196 -TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 -~~l~~e~l~~~dvVV~~~~ 214 (1104)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134567899998863
No 133
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.70 E-value=0.068 Score=60.52 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=52.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+.+++|+|+|+||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 456899999999999999999999999 8999996431 3777777766543333222
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
.... .. . + .....++|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2111 00 0 0 11235789999997
No 134
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.67 E-value=0.11 Score=61.28 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=60.9
Q ss_pred EEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001301 122 ILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 199 (1104)
Q Consensus 122 VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~- 199 (1104)
|+|+|+|.+|..+++.|+..+-- ++++.|.+ ..|++..++.+ . ..++....-+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~-------------------~~~~~~~~~~~--~--~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN-------------------PEKAERLAEKL--L--GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS-------------------HHHHHHHHT----T--TTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC-------------------HHHHHHHHhhc--c--ccceeEEEEecCC
Confidence 79999999999999999999865 99998852 22444443333 2 234444443332
Q ss_pred ----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 200 ----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 200 ----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.++++++|+||.|..+. ....+-+.|.+.| +.+|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 24788999999998766 6668899999999 88888
No 135
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.67 E-value=0.056 Score=63.71 Aligned_cols=76 Identities=25% Similarity=0.318 Sum_probs=57.2
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|.+++|+|||+|-.|.-+|++|...|++.|+++.. + .-||+.+++++. ..+ ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T---------~erA~~La~~~~-----~~~--~~ 228 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------T---------LERAEELAKKLG-----AEA--VA 228 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------C---------HHHHHHHHHHhC-----Cee--ec
Confidence 388999999999999999999999999999999643 2 237777777775 222 22
Q ss_pred cccchhhhcCCceEEEecCCHh
Q 001301 196 TELTKEKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~ 217 (1104)
-+-..+.+.++||||.++....
T Consensus 229 l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 229 LEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHhhhhCCEEEEecCCCc
Confidence 1112357889999999987544
No 136
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.60 E-value=0.087 Score=59.49 Aligned_cols=74 Identities=27% Similarity=0.322 Sum_probs=54.6
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+..+|+|+|+||.+..++..|...|+.+|+|+..+ ..||+.+++.+.+..+.+........
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~~ 185 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALADL 185 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccccc
Confidence 46889999999999999999999999999998642 34888888888888873333222111
Q ss_pred cchhhhcCCceEEEec
Q 001301 198 LTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~ 213 (1104)
+....+|+||.|+
T Consensus 186 ---~~~~~~dliINaT 198 (283)
T COG0169 186 ---EGLEEADLLINAT 198 (283)
T ss_pred ---ccccccCEEEECC
Confidence 1111578888776
No 137
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.54 E-value=0.098 Score=59.10 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=53.4
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3667899999999999999999999999999999752 2366666666654321 222 1
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
... .+.+.++|+||.|+.
T Consensus 177 ~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 177 LEL-QEELADFDLIINATS 194 (278)
T ss_pred ccc-hhccccCCEEEECCc
Confidence 111 245678899988873
No 138
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.47 E-value=0.084 Score=60.00 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=54.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+++++++|+|+||+|..++..|+..|+ .+|+|++.+.- ...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 77999863210 013555566666555554444
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
.... +.+. +.+ ...+..+|+||||+
T Consensus 183 ~~~d--~~~~-~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LNDT-EKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhhh-hHH--HhhhccCCEEEEeC
Confidence 3221 2211 111 12345679999886
No 139
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.33 E-value=0.11 Score=59.52 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=52.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEEEe
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISAL 194 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~~~ 194 (1104)
.+|.|+|+|++|+.+|..|+..|+. .|.|+|.+ ..|++..+..|.... ..+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999852 235555566665543 2233332
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+.+.++|+||.|..
T Consensus 61 -~--~~~~l~~aDIVIitag 77 (306)
T cd05291 61 -G--DYSDCKDADIVVITAG 77 (306)
T ss_pred -C--CHHHhCCCCEEEEccC
Confidence 2 2345789999999875
No 140
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.29 E-value=0.08 Score=59.97 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+++++|+|+|+||.|..++..|+.+|+ .+|+|++
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~n 156 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVIN 156 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 567899999999999999999999999 8999985
No 141
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.27 E-value=0.075 Score=63.33 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=54.0
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.+.+++|+|+|+||.|..++++|...|+.+|+++..+ ..||+.+++.+. .+.+ ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~--~~ 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASA--HY 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeE--ec
Confidence 3677899999999999999999999999999997642 125555544432 1222 21
Q ss_pred cccchhhhcCCceEEEecCCHh
Q 001301 196 TELTKEKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~ 217 (1104)
..-..+.+.++|+||.|+.+..
T Consensus 233 ~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 LSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHhccCCEEEECcCCCC
Confidence 1111356889999999986533
No 142
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.20 E-value=0.079 Score=57.10 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=60.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++++++| |||||-+++|.|+.-|+ ..+.|.| ..| . -.+...|+++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E-------------n------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE-------------N------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh-------------C------HHHHHHHhccCCCce
Confidence 4678888886 99999999999999999 5555544 221 1 235667999999999
Q ss_pred EeeecccCCcc--ccccchh--hhhccCCEEEEcc
Q 001301 593 TEALQIRANPE--TENVFND--TFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~--~~~~~~~--~f~~~~DvVi~al 623 (1104)
+..+..++... .+..|+. .-|...|++||..
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 99998888752 1222321 2256789999763
No 143
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.11 E-value=0.18 Score=57.23 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=41.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE 184 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e 184 (1104)
+++++|+|+|+||.+..|+-.|+..|+++|+|++.+. + ...||+.+++++..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999998521 0 13478877777654
No 144
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.07 E-value=0.15 Score=57.83 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=87.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcc---cccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLn---RQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
.+|.|||+|..|+.+|.+|++.|. .++++|.+.=...... ++.+=+-..-|+.....+...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--------- 70 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAAL--------- 70 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHH---------
Confidence 489999999999999999999998 8999985532221100 0000000011111111111111
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc-CCHHHHHHHh----hcccccccceEecccCCc-ccceEEEeCCcccccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYID----QRCLYFQKPLLESGTLGA-KCNTQMVIPHLTENYG 667 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al-Dn~~aR~~i~----~~c~~~~~pli~~g~~G~-~G~v~v~ip~~t~~y~ 667 (1104)
.++...+ + + +-++++|+||.|+ ++.+.++.+- ..|-.-+..+.. .|.+. -........+...+.+
T Consensus 71 ----~~l~~~~-~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~s-nTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 71 ----ARLRFTT-D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLAS-NTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred ----hCeEeeC-C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEE-CCCCCCHHHHHhhcCCCccEEE
Confidence 1111111 1 1 2257899999775 5666666553 333122344443 23221 1111111111111122
Q ss_pred cC-CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhH
Q 001301 668 AS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 711 (1104)
Q Consensus 668 ~~-~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~ 711 (1104)
.. -+|+ ...|...+-.-+.....++.+++.++...++..|-.+
T Consensus 142 ~hf~~P~-~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 142 LHFFNPV-PVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred EecCCCc-ccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 21 1222 2345566777788889999999998887777766543
No 145
>PRK04148 hypothetical protein; Provisional
Probab=93.99 E-value=0.49 Score=47.52 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=67.1
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
++.+|++||+| .|..+|..|...|. .++.+|-+. ..++ ..++.. +++...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~----~a~~~~----~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVE----KAKKLG----LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHH----HHHHhC----CeEEECc
Confidence 34689999999 99999999999996 788887422 1222 222221 3344444
Q ss_pred c---chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 198 L---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 198 l---~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
+ +.++..++|+|-.+..+.+...-+-+++++.+ .+++...
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEEEc
Confidence 3 44678899999999999999999999999999 7777633
No 146
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.91 E-value=0.087 Score=62.17 Aligned_cols=75 Identities=28% Similarity=0.388 Sum_probs=56.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|.+++|+|||+|-.|.-++++|+..|+ .+|+|+ ||+. .||.-+|+.+. .+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----Ce
Confidence 3888999999999999999999999999 899986 6655 36666666654 23
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCH
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNV 626 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 626 (1104)
+..+.. + ..++..+|+||.|+..+
T Consensus 226 ~~~l~e--------l--~~~l~~~DvVissTsa~ 249 (414)
T COG0373 226 AVALEE--------L--LEALAEADVVISSTSAP 249 (414)
T ss_pred eecHHH--------H--HHhhhhCCEEEEecCCC
Confidence 322221 1 35678999999997644
No 147
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=93.88 E-value=0.038 Score=59.02 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=49.4
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChhhHH-HHHHHHHhCCceE------EEE---eCCccCcccCccc
Q 001301 106 LAVYGRETMRRLFASNILISGMQGLGAE-IAKNLILAGVKSV------TLH---DEGVVELWDLSSN 162 (1104)
Q Consensus 106 i~l~G~e~q~kL~~s~VlIiG~gglGse-iaKnLvlaGVg~i------tLv---D~d~V~~sdL~rq 162 (1104)
+..=+.++++++++++|.|+|.|+.|++ ++..|..+||+.+ +++ |.+..+.+++++|
T Consensus 92 ~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~ 158 (193)
T TIGR03882 92 LGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQR 158 (193)
T ss_pred cCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHH
Confidence 4445678899999999999999999988 9999999999998 888 8877777777776
No 148
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.87 E-value=0.11 Score=58.63 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=32.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++|+|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3677899999999999999999999998 79999863
No 149
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.80 E-value=0.035 Score=51.10 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=30.6
Q ss_pred cCccCchhhhhcchhhHHHHHhhccCccccc-ceeeccCCCC
Q 001301 441 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVES 481 (1104)
Q Consensus 441 ~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~-q~l~fD~~e~ 481 (1104)
.+.|.|+.+++|.+.|+|+||.|+|.-.|+. ++++||+...
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 4789999999999999999999999877755 6777998754
No 150
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.17 Score=55.43 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=64.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
++++|+|+|-+|..+|+.|+..|- .+++||.|.- .+.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE----------------------RVEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH----------------------HHHHHhhh---hcceEEE
Confidence 478999999999999999999996 8899986641 11111211 1233344
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc-cccceEe
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY-FQKPLLE 645 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~-~~~pli~ 645 (1104)
...-.. ...+...-..++|+++-++++-..-..+...+.+ +++|-+.
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEE
Confidence 333222 2233333467899999999998777777776655 7888774
No 151
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.77 E-value=0.11 Score=62.68 Aligned_cols=36 Identities=39% Similarity=0.597 Sum_probs=32.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 568999999999999999999999998 899998653
No 152
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.58 E-value=0.11 Score=61.99 Aligned_cols=35 Identities=11% Similarity=0.462 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n 212 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN 212 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC
Confidence 4677899999999999999999999999 8899874
No 153
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.52 E-value=0.076 Score=48.04 Aligned_cols=31 Identities=32% Similarity=0.640 Sum_probs=28.1
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
||+|||.|.+|+|+|..|+..|. +++|++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEecc
Confidence 68999999999999999999997 88988753
No 154
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.51 E-value=0.12 Score=53.60 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc-c
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE-L 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~-l 198 (1104)
.+|.+||+|-.|+.+|+||+.+|. .++++|.+.-....+... |-..++...+.+++. ++-+...... -
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999998 688888543211111111 111111112222222 3444443321 1
Q ss_pred chh------hh---cCCceEEEec-CCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 199 TKE------KL---SDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 199 ~~e------~l---~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.++ .+ ..=++||++. .+.+...++.+.+.++| +.||.+.+.|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 111 22 2335777665 47888999999999999 99999888774
No 155
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.43 E-value=0.094 Score=56.73 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=68.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|.+++|+|||.|.+|..=++.|..+|. +++++-.+. +. . .... ...+ +
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~-~~-----------------e---l~~~-~~~~---~ 57 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEF-EP-----------------E---LKAL-IEEG---K 57 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCc-cH-----------------H---HHHH-HHhc---C
Confidence 4678899999999999999999999996 999886554 11 0 0111 1111 1
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEec
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
++..... |+.+.+..+++||-|+||.+--..+-+.|..+++|+-.+
T Consensus 58 i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 58 IKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred cchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 2222222 334445669999999999999999999999999887643
No 156
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.30 E-value=0.25 Score=50.09 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.7
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+...+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778999885
No 157
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=93.29 E-value=0.043 Score=50.93 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHHH-c-CCceeeeecCCceeeccCCcchhhcccCcHHHH
Q 001301 1017 DNPTLRQLLQWLQD-K-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDL 1064 (1104)
Q Consensus 1017 ~~~TL~~li~~~~~-~-~l~~~~i~~g~~~LY~~~~~~~~~~l~~~l~~l 1064 (1104)
..+||++|++.+-+ + |+..+.|+.|..+||++......++++|+|++|
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~el 56 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSEL 56 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGG
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHc
Confidence 47899999998744 5 999999999999999987544578999999999
No 158
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.23 E-value=0.21 Score=49.42 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred cEEEEcC-CcchHHHHHHHHh-cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 518 KVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 518 ~VlvvG~-GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
||.|+|+ |-.|.++++.+.. -|+ --.-.+|... | -+ -..|+|. +..+. ...+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~-----~~-~g~d~g~---------~~~~~-~~~~~v 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---S-----AK-VGKDVGE---------LAGIG-PLGVPV 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---S-----TT-TTSBCHH---------HCTSS-T-SSBE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---c-----cc-ccchhhh---------hhCcC-Cccccc
Confidence 7999999 9999999999988 565 2234444222 0 01 1234441 11111 111111
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
+ .+. .+.+..+|+|||.+ ++++-...-++|.++++|+| .||.|+.
T Consensus 58 ~-----~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 58 T-----DDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp B-----S-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred c-----hhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 1 111 24556699999999 88888888899999999999 5888874
No 159
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.14 E-value=0.19 Score=57.18 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=52.6
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+++++++|+|+||.+..++-.|+..|+ .+|+|++.+. . ...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~---------------~-~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD---------------E-FFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc---------------c-HHHHHHHHHHHhhhccC-ceE
Confidence 567899999999999999999999999 8999986221 0 23477777776643221 122
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
.... +.. ...+ .+-..++|+||||+
T Consensus 180 ~~~~--~~~--~~~l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD--QQAF-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh--hhhh-hhhcccCCEEEECC
Confidence 2211 110 0001 01235789999986
No 160
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.07 E-value=0.027 Score=59.26 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=33.0
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 511 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 511 q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
...|.+++|.|||+|.||.++++.|...|. +++.+|...
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~ 69 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSP 69 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSC
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccC
Confidence 346889999999999999999999999998 888888554
No 161
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.07 E-value=0.29 Score=56.39 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=53.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc-EEEEeec
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV-AISALTT 196 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V-~V~~~~~ 196 (1104)
..+|.|||+|.+|+.+|-.|+..|+- .|.|+|- ...+++..+.-|+...|.. .+.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999985 7999984 2335556666677665431 2333322
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+-+++.|+||.+..
T Consensus 67 --~~~~~~~adivIitag 82 (315)
T PRK00066 67 --DYSDCKDADLVVITAG 82 (315)
T ss_pred --CHHHhCCCCEEEEecC
Confidence 2345799999998765
No 162
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.03 E-value=0.33 Score=55.75 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=53.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+...+|+|+|+|.+|..++++|...|+..|+++|.+. .|++.+++.+. . .+... .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-H
Confidence 5789999999999999999999999999999987532 34544444432 1 21111 1
Q ss_pred ccchhhhcCCceEEEecCCHhH
Q 001301 197 ELTKEKLSDFQAVVFTDISLEK 218 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~ 218 (1104)
. ..+.+.++|+||.|+.+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHY 251 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCch
Confidence 1 12456789999999875554
No 163
>PLN00203 glutamyl-tRNA reductase
Probab=92.89 E-value=0.2 Score=61.40 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=52.7
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
|.+.+|+|||+|+.|..++++|...|+.+|++++.+ ..|++.+++.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 557899999999999999999999999999998742 12444443333 3333333222
Q ss_pred ccchhhhcCCceEEEecCC
Q 001301 197 ELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~ 215 (1104)
.-..+.+.++|+||.|+..
T Consensus 321 ~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred hhHHHHHhcCCEEEEccCC
Confidence 1123567899999998753
No 164
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.88 E-value=0.47 Score=53.58 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.1
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 479999999999999999999997 89999854
No 165
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.71 E-value=0.4 Score=55.04 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=52.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC---cEEEEeec
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISALTT 196 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~---V~V~~~~~ 196 (1104)
+|.|||+|.+|+.+|-.|+..|+ +.|.|+|- -+.|++.-+.-|+...+. ..+.....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999997 67999984 233555555566654431 12333333
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+++.|+||.|..
T Consensus 62 --~y~~~~~aDivvitaG 77 (307)
T cd05290 62 --DYDDCADADIIVITAG 77 (307)
T ss_pred --CHHHhCCCCEEEECCC
Confidence 3467899999998765
No 166
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.71 E-value=0.27 Score=53.11 Aligned_cols=63 Identities=29% Similarity=0.480 Sum_probs=50.1
Q ss_pred hhcCeEEEE-cCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILIS-GMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIi-G~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+..++|+++ |+||+|-+++|.|...|++.+.+.|. .+| -.+..+|+++||.+++-.++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~----~En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS----EEN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh----hhC-----------------HHHHHHHhccCCCceEEEEE
Confidence 456778887 59999999999999999998888764 111 23456899999999999988
Q ss_pred cccch
Q 001301 196 TELTK 200 (1104)
Q Consensus 196 ~~l~~ 200 (1104)
.+++.
T Consensus 62 ~DVt~ 66 (261)
T KOG4169|consen 62 CDVTN 66 (261)
T ss_pred ecccc
Confidence 77653
No 167
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.59 E-value=0.32 Score=58.19 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999875
No 168
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.53 E-value=1.2 Score=42.80 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=56.9
Q ss_pred EEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccch-
Q 001301 122 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK- 200 (1104)
Q Consensus 122 VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~- 200 (1104)
|+|+|+|.+|.++++.|...| ..++++|.+.- + .+.+.+.. +.++..+.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999944 68999986431 1 22333333 2244444322
Q ss_pred -----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 201 -----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 201 -----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
..+.+++.||++.++.+....+...+++.++
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~ 88 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNP 88 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTT
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCC
Confidence 3467889999998888888888888898663
No 169
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.45 E-value=0.48 Score=54.71 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
++|.|||+|-+|+.++..|+..|. .++++|.+.=....+ +.....+.+.+.+..+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999998 999999654211110 00111111111111110 0011
Q ss_pred cccCCccccccchhhhhccCCEEEEcc-CCHHHHHHHhhccccccc--ceEecccCCcccc-eEEEeCCcccccCcCCCC
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGASRDP 672 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~al-Dn~~aR~~i~~~c~~~~~--pli~~g~~G~~G~-v~v~ip~~t~~y~~~~~p 672 (1104)
..++...+ + + .+.++++|+|+.|+ .+.+.++.+-......-. .+|.+.|.+..-. ..-.+.+-.-+.....-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 11222111 1 1 24568999999775 466666644433322212 2777777664321 110111111122221111
Q ss_pred CCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhH
Q 001301 673 PEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 711 (1104)
Q Consensus 673 ~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~ 711 (1104)
|..-.|+.-+-.-|....-++.++++++.. .+..|-.+
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV~v 182 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPLHV 182 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeEec
Confidence 222345555556678888899999998876 66555433
No 170
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=92.36 E-value=0.12 Score=41.84 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=19.7
Q ss_pred hhcccchHHHHHHHHHHHHHHHH
Q 001301 746 KERCETFQDCITWARLRFEDYFA 768 (1104)
Q Consensus 746 ~~~~~~~~~ci~~a~~~f~~~F~ 768 (1104)
...|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 46799999999999999999983
No 171
>PLN02602 lactate dehydrogenase
Probab=92.36 E-value=0.36 Score=56.37 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=52.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC---CcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp---~V~V~~~~ 195 (1104)
.+|.|||+|.+|+.+|-.|+..|+ ..|.|+|- .+.|++..+.-|+...+ .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 57999985 12344444555555433 3444431
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
-+.+.+++.|+||.+..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 12345899999999865
No 172
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.36 E-value=0.38 Score=55.36 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=52.3
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC---cEEEEe
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISAL 194 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~---V~V~~~ 194 (1104)
..+|.|||+|.+|+.+|-.|+..|.. .|.|+|.. +.+++..+.-|+...|. .+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 35899999999999999999999985 69999852 23555555566655542 234321
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+.+++.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 2345899999998654
No 173
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.31 E-value=0.23 Score=48.72 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred hhhccCCEEEEccCCHHHHHHHhhcccccccceEec-ccCCcccceEEEeCC
Q 001301 611 TFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES-GTLGAKCNTQMVIPH 661 (1104)
Q Consensus 611 ~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~-g~~G~~G~v~v~ip~ 661 (1104)
+-+.+.|+||.|+++-.++.+.... ...+.++|+. +..-+...+...+|.
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~pe 112 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLPE 112 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-HH
T ss_pred hHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeCC
Confidence 4458999999999998888887766 7778888863 344444445555554
No 174
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.26 E-value=0.41 Score=54.72 Aligned_cols=71 Identities=25% Similarity=0.243 Sum_probs=52.4
Q ss_pred EEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC---cEEEEeecc
Q 001301 122 ILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISALTTE 197 (1104)
Q Consensus 122 VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~---V~V~~~~~~ 197 (1104)
|.|||+|.+|+.+|-.|+..|+ ..|+|+|.+ +.|++..+..|.+..+. +++... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 569999852 34666666677776653 343321 1
Q ss_pred cchhhhcCCceEEEecC
Q 001301 198 LTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+.++|+||.|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 1357889999999865
No 175
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.14 E-value=0.32 Score=55.00 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=52.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.+++++|+|+||.+..++..|+..|+ .+|+|+. | -..|++.+++.+.+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------R---------t~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------R---------TRERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------C---------CHHHHHHHHHHhhhcccccccc
Confidence 46899999999999999999999999 8999984 2 1357777777777766522221
Q ss_pred eecccCCccccccchhhhhccCCEEEEcc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
... +.+. .+++|+||||+
T Consensus 181 ~~~-----~~~~------~~~~dliINaT 198 (283)
T COG0169 181 ALA-----DLEG------LEEADLLINAT 198 (283)
T ss_pred ccc-----cccc------ccccCEEEECC
Confidence 111 1110 11689999997
No 176
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.94 E-value=0.17 Score=57.31 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=29.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
++|.|||+|.+|+.++.+|+..|. +++++|.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999997 899998664
No 177
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.90 E-value=0.23 Score=60.10 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=67.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|++++|+|||.|.++..=++.|...|. +|+||-++. .+ .++.+-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-------------~~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-------------QFTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-------------HHHHHHhCCC
Confidence 5788999999999999999999999996 899985431 11 0111111123
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
|+.+...+. ...++++++||.|+||.+.-..|...|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 444443332 34568899999999999999999999999888754
No 178
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.85 E-value=0.22 Score=52.01 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcCCcc-hHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGAL-GCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~Ggi-G~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 478899999999985 8889999999998 688876
No 179
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.81 E-value=1.3 Score=48.48 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=64.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc--
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE-- 197 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~-- 197 (1104)
.+++|+|+|-+|..+|++|...|- .++++|.|. +.+.+.+++ .....++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~----------------------~~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE----------------------ERVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH----------------------HHHHHHhhh---hcceEEEEecCC
Confidence 479999999999999999999997 455665432 111112221 1122222222
Q ss_pred ----cchhhhcCCceEEEecCCHhHhhhHHHHHHH-cCCCcceEEeeecce-eEEEEeecC
Q 001301 198 ----LTKEKLSDFQAVVFTDISLEKAVEFDDYCHN-HQPPIAFIKSEVRGL-FGNIFCDFG 252 (1104)
Q Consensus 198 ----l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~-~~~~ipfI~~~~~G~-~G~vf~d~g 252 (1104)
+.+.-+.++|+||.++.+......+...+.+ .| +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 1223467899999988876666666666655 78 78887665543 444444444
No 180
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.49 E-value=0.54 Score=53.86 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=29.1
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+||.|||+|++|+.++..|+..|+. .+|+++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 3799999999999999999999982 38999974
No 181
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.47 E-value=0.64 Score=56.63 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEE
Q 001301 112 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 191 (1104)
Q Consensus 112 e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V 191 (1104)
++..-+..++|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .++
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~- 61 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVA- 61 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcE-
Confidence 44455677899999999999999999999998 899988421 011 1112221 233
Q ss_pred EEeecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEE
Q 001301 192 SALTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 192 ~~~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.+...-.++.+.++|+||.+.. +.. ...-..+++++ +|++.
T Consensus 62 -~~~~~~~~~~~~~~d~vV~Spgi~~~--~p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 62 -DISTAEASDQLDSFSLVVTSPGWRPD--SPLLVDAQSQG--LEVIG 103 (473)
T ss_pred -EEeCCCchhHhcCCCEEEeCCCCCCC--CHHHHHHHHCC--Cceee
Confidence 3333223456778999988753 222 22344678899 88876
No 182
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.42 E-value=0.67 Score=53.08 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=29.1
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..+|+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999996 68888863
No 183
>PLN00203 glutamyl-tRNA reductase
Probab=91.37 E-value=3.6 Score=50.62 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
|.+++|+|||+|.+|..++++|...|+ .+|++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEe
Confidence 456799999999999999999999998 7899875
No 184
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.31 E-value=0.21 Score=54.67 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=35.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCc--eEEEEeCCc
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVK--SVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg--~itLvD~d~ 153 (1104)
.+++.+|+|+|+|+.|..+++.|+..|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999863
No 185
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.27 E-value=0.15 Score=55.91 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=34.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCc--ceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQG--KLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g--~i~iiD~D 554 (1104)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4778899999999999999999999999 6 89999865
No 186
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.13 E-value=1.3 Score=50.70 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=28.7
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999987 78898854
No 187
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.91 E-value=0.8 Score=54.75 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCc
Confidence 578899999999999999999999998 799988654
No 188
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.79 E-value=1 Score=47.91 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=51.8
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++..++.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999998 488888642 235666666665332 2333332
Q ss_pred ec-ccc--hhhhcCCceEEEecC
Q 001301 195 TT-ELT--KEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~-~l~--~e~l~~~dvVV~~~~ 214 (1104)
.. +.. .+.+.++|+||.++.
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 245678888887764
No 189
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.70 E-value=0.56 Score=47.53 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=49.7
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc--EE
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL--NT 593 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~--~i 593 (1104)
.||.|||+ |.+|+.++-.|++.|++ .+|.|+|.+ ..|++.-+.-+....+.. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccC-------------------cccceeeehhhhhhhhhccccc
Confidence 48999999 99999999999999994 459999732 225555555555443322 22
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
.... +. .+-+++.|+||.+..
T Consensus 58 ~i~~---~~-------~~~~~~aDivvitag 78 (141)
T PF00056_consen 58 RITS---GD-------YEALKDADIVVITAG 78 (141)
T ss_dssp EEEE---SS-------GGGGTTESEEEETTS
T ss_pred cccc---cc-------ccccccccEEEEecc
Confidence 2222 11 123578999998764
No 190
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.69 E-value=0.52 Score=54.21 Aligned_cols=36 Identities=39% Similarity=0.604 Sum_probs=32.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+...+|+|+|+|.+|..+++.|...|+ .+|+++|.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~ 211 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRT 211 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCC
Confidence 678999999999999999999999888 789998743
No 191
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.69 E-value=0.97 Score=55.05 Aligned_cols=128 Identities=18% Similarity=0.127 Sum_probs=72.5
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+...+|+|+|+|++|.++|..|...|. +++++|.... ..+....+.|++.+ +++.. .
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~g--v~~~~--~ 70 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEALG--ATVRL--G 70 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHcC--CEEEE--C
Confidence 457799999999999999999999998 5999985421 12223344555543 44432 2
Q ss_pred ccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeec--CCceEEecCCCCCCccceeccc
Q 001301 197 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF--GPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~--g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
.-. +....+|+||.+..-.. ...+-..+++.| +|++.-. .+.+.++... .+-..|.=++|....+.++..|
T Consensus 71 ~~~-~~~~~~D~Vv~s~Gi~~-~~~~~~~a~~~g--i~v~~~~--e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~i 143 (480)
T PRK01438 71 PGP-TLPEDTDLVVTSPGWRP-DAPLLAAAADAG--IPVWGEV--ELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASM 143 (480)
T ss_pred CCc-cccCCCCEEEECCCcCC-CCHHHHHHHHCC--CeecchH--HHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHH
Confidence 111 13456899998764211 223445668888 8886411 1222221110 1123344456666555555554
No 192
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.66 E-value=1.3 Score=53.79 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.-+..++|+|+|+|+.|..+|+.|...|. .+++.|...... .....+.|.+.. +.+ +
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~------------------~~~~~~~l~~~g--i~~--~ 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE------------------LGEVSNELKELG--VKL--V 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc------------------chHHHHHHHhCC--CEE--E
Confidence 34567899999999999999999999997 789988543110 001112344332 233 2
Q ss_pred ecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 195 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.....++.+.++|+||.+.. ......+-..+++.+ ||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spg-i~~~~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPS-MRIDSPELVKAKEEG--AYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCC-CCCCchHHHHHHHcC--CcEEe
Confidence 23223456788999998743 222233455678899 88875
No 193
>PRK04148 hypothetical protein; Provisional
Probab=90.63 E-value=1.2 Score=44.89 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=66.2
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++.+|++||+| -|..+++.|+.+|. .++.+|-+.- . .+.+++. -+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-------------------a----V~~a~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-------------------A----VEKAKKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-------------------H----HHHHHHh----CCe
Confidence 34689999999 99999999999997 9999984421 1 2222222 123
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
+....+... +.++++++|+|...--..+--..+-+.+.+.+.+++
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 443333322 235688999999998888888899999999999887
No 194
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.61 E-value=1.9 Score=48.88 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 579999999999999999999997 89999855
No 195
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.59 E-value=0.61 Score=53.81 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.9
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+.+|.|||+|.+|..++-.|+..|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998889999963
No 196
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.53 E-value=0.52 Score=54.33 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=49.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc-EEe
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL-NTE 594 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~-~i~ 594 (1104)
..||.|||+|.+|+.++-.|+..|+. ..|.|+|- .+.|+...+.-+....|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeE
Confidence 46999999999999999999999983 47999873 2344555555566555422 111
Q ss_pred eecccCCccccccchhhhhccCCEEEEcc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
... ++ + +-++++|+||.+.
T Consensus 63 i~~---~~-----~--~~~~~adivIita 81 (315)
T PRK00066 63 IYA---GD-----Y--SDCKDADLVVITA 81 (315)
T ss_pred EEe---CC-----H--HHhCCCCEEEEec
Confidence 111 11 1 2368899988775
No 197
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.39 E-value=0.32 Score=56.19 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=56.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccc-cCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~-sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|.+++|.|||+|.||+.+++-|...|+ ++...|.-.-.. .... |- .....|.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~----------~~----~~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVD----------GV----VGVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccc----------cc----eecccHHHHHhhC
Confidence 6789999999999999999999999999 888888522111 0000 00 0011233333345
Q ss_pred EEeeecccCCccccccchhhhhccC---CEEEEc
Q 001301 592 NTEALQIRANPETENVFNDTFWENL---NVVVNA 622 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~---DvVi~a 622 (1104)
.|.....-++++|..+++.+.|... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 5666666666666666666555443 255565
No 198
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.39 E-value=0.66 Score=55.66 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=51.5
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+.+|+|+|+|++|..+++.|...|+..|++++.+. .|+...++.+. . .+... .
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG----G-EAIPL-D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC----C-cEeeH-H
Confidence 6789999999999999999999999999999987532 24443333321 1 11111 1
Q ss_pred ccchhhhcCCceEEEecCCHh
Q 001301 197 ELTKEKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~ 217 (1104)
.+ .+.+.++|+||.|+.+..
T Consensus 235 ~~-~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 235 EL-PEALAEADIVISSTGAPH 254 (423)
T ss_pred HH-HHHhccCCEEEECCCCCC
Confidence 11 245678999999986433
No 199
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.37 E-value=0.55 Score=53.91 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=28.4
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
||.|||+|.+|+.+|-.|+..|++ +.|.|+|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 689999999999999999999984 6899997
No 200
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.28 E-value=1.6 Score=40.52 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=48.8
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC--ceEEEE-eCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 121 NILISGMQGLGAEIAKNLILAGV--KSVTLH-DEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV--g~itLv-D~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+|.|||+|.+|..+++.|+..|+ .+|.++ +.+ ..|+ +++.+..+ +.+. ...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~--~~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQAT--ADD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEE--SEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHH----HHHHHhhc-cccc--cCC
Confidence 68999999999999999999994 345533 321 1122 34444444 2222 111
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
..+.++..|+||+|..+......+.++
T Consensus 55 -~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 55 -NEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -HHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -hHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 345677899999999876666666665
No 201
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.27 E-value=0.92 Score=46.93 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+|.+||+|..|+.++++|+..|. .+++.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeec
Confidence 479999999999999999999998 788876
No 202
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.06 E-value=0.78 Score=53.02 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++..||.|||+|.+|+.++-.++..|+ ..|+|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 455799999999999999999999998 46999984
No 203
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.92 E-value=1.2 Score=53.69 Aligned_cols=103 Identities=12% Similarity=0.199 Sum_probs=62.5
Q ss_pred hcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 118 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 118 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+..+|||.|. |-+|+.+++.|...|. +|..+|..... +.+.....+ .++ .++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEEC
Confidence 3478999996 5699999999999997 46666642210 000000011 122 3444444
Q ss_pred ccchhhhcCCceEEEecC---------CH--------hHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 197 ELTKEKLSDFQAVVFTDI---------SL--------EKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~---------~~--------~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
++.+..+.++|+||-+.. +. .....+-++|++.+ ++||.+++...||
T Consensus 175 D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg 238 (442)
T PLN02206 175 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYG 238 (442)
T ss_pred CccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhC
Confidence 544445567898885432 11 11245667899998 7899988877665
No 204
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.91 E-value=1.1 Score=51.92 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
++..+|.|||+|.+|+.+|-.++..|+..|.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34579999999999999999999999867999986
No 205
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.77 E-value=0.63 Score=52.90 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 356778999998 69999999999999997 6777754
No 206
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.71 E-value=0.88 Score=50.17 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=44.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
++.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 36788999998 68999999999999997 78887621 223444555555544455
Q ss_pred EEeeecccCCc
Q 001301 592 NTEALQIRANP 602 (1104)
Q Consensus 592 ~i~~~~~~v~~ 602 (1104)
++..+..++.+
T Consensus 59 ~~~~~~~Dl~~ 69 (260)
T PRK07063 59 RVLAVPADVTD 69 (260)
T ss_pred eEEEEEccCCC
Confidence 56666555553
No 207
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.65 E-value=0.93 Score=51.78 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=67.1
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeecc-c
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTTE-L 198 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~~-l 198 (1104)
+|.|||+|..|..+|++|...|. .++++|.+.-....+.. .|..-+....+.++.. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 68888875422111110 1211111122223332 355555555432 1
Q ss_pred ch----h---hhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 199 TK----E---KLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 199 ~~----e---~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.. . .+..-++||++.. +.....++.+.+++.| +.|+.+.+.|-
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 11 1 2333467777643 5556667888888988 88888776664
No 208
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.59 E-value=1.8 Score=46.57 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=31.7
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.|+.++|+|+|+|.+|..+|++|...|. ++++.|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4778999999999999999999999998 67787753
No 209
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.49 E-value=1.1 Score=51.06 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCHHHHHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 109 YGRETMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 109 ~G~e~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
|+...+..+.+++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4444455678889999985 7899999999999997 5666653
No 210
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.47 E-value=0.67 Score=53.31 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 456799999999999999999999998 7777764
No 211
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.45 E-value=0.84 Score=52.29 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|++++++|.| .||||.++++.|++.|. ++++++.+. .|.+.+.+.+.+.+|..+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRNR-------------------AKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCc
Confidence 5677899998 78999999999999997 777775321 244455555665566555
Q ss_pred EeeecccCC
Q 001301 593 TEALQIRAN 601 (1104)
Q Consensus 593 i~~~~~~v~ 601 (1104)
+..+..++.
T Consensus 67 v~~~~~Dl~ 75 (313)
T PRK05854 67 LSLRALDLS 75 (313)
T ss_pred eEEEEecCC
Confidence 555555554
No 212
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.29 E-value=0.67 Score=48.46 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=31.3
Q ss_pred HhhcCeEEEEcCCh-hhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQG-LGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|.+++|+|+|.|. +|..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 57899999999998 48889999999999 6998874
No 213
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.22 E-value=1.4 Score=50.86 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..||.|||+|.+|+.++-.|++.|++ ..|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 46999999999999999999999984 57999973
No 214
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.18 E-value=1.5 Score=53.38 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=68.9
Q ss_pred HHHHhhhhhcc-CHHHHHHhhcCeEEEEcCCh-hhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHH
Q 001301 99 EDLHSRQLAVY-GRETMRRLFASNILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 176 (1104)
Q Consensus 99 ~~~Y~RQi~l~-G~e~q~kL~~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kae 176 (1104)
+++..|+---. -..-+.-+.+++|+|-|.|| +|+|+++.++..+.++|.++|.|. ++-.
T Consensus 229 eDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~ 289 (588)
T COG1086 229 EDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLY 289 (588)
T ss_pred HHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHH
Confidence 45566653332 23455678899999999887 999999999999999999998643 4455
Q ss_pred HHHHHHHHhCCCcEEEEeecccch-----hhhcC--CceEEE
Q 001301 177 ASIQKLQELNNAVAISALTTELTK-----EKLSD--FQAVVF 211 (1104)
Q Consensus 177 a~~~~L~eLNp~V~V~~~~~~l~~-----e~l~~--~dvVV~ 211 (1104)
.....|++..|..++..+-.++-+ ..+.+ .|+|+-
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfH 331 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFH 331 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEE
Confidence 566788888888888887766633 34555 577763
No 215
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.13 E-value=0.98 Score=59.45 Aligned_cols=105 Identities=13% Similarity=0.223 Sum_probs=63.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhccccc-----CC---CcceEEecCCcccccCcccccCcccCccccchHHHHHHHHH
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 585 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~-----~~---~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~ 585 (1104)
-+.++|+|+|||.+|..+++.|++.+-.. +. .-.++|.|.+ ..+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~--- 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVE--- 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHH---
Confidence 34679999999999999999999864210 00 0125666533 122332332
Q ss_pred HhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 586 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
..|+++ +..-.+.+ .+.+ ..++++.|+||+|+-.. .=..+...|.+.++.+++..
T Consensus 625 -~~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 625 -GIENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -hcCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 224332 22222322 1222 23457899999999763 34567889999999998653
No 216
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.05 E-value=0.55 Score=53.26 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+++++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 46788999999999 99999999999987 788875
No 217
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.04 E-value=1.1 Score=50.31 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=52.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
++.++++|-| .+|||-|+++.||+-|. +++|+- |. +.|-+.+++.+.... .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLva---------------R~----~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVA---------------RR----EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEe---------------Cc----HHHHHHHHHHHHHhh-Cce
Confidence 4567899999 79999999999999998 888874 22 457788888888877 788
Q ss_pred EeeecccCCccc
Q 001301 593 TEALQIRANPET 604 (1104)
Q Consensus 593 i~~~~~~v~~~~ 604 (1104)
++.+..++++.+
T Consensus 58 v~vi~~DLs~~~ 69 (265)
T COG0300 58 VEVIPADLSDPE 69 (265)
T ss_pred EEEEECcCCChh
Confidence 888888877543
No 218
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.00 E-value=0.64 Score=53.06 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=60.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeecccc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~~l~ 199 (1104)
+|.|||+|..|..++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 678888654322222111 110010111111111 24444444433221
Q ss_pred hh-------hhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 KE-------KLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~e-------~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
++ .+..=++||++.. ......++.+.+.+.| +.|+.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g--~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG--IHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC--CeEEecCCCC
Confidence 11 1223366776644 3345556666777777 7777776655
No 219
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.95 E-value=0.77 Score=52.80 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||.++++.+.-.|. ++..+|.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~ 176 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYST 176 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECC
Confidence 6788999999999999999999987776 7888875
No 220
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.90 E-value=0.6 Score=54.24 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||+|.||.++++.|...|. +++.+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999998887 7888874
No 221
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.86 E-value=1.4 Score=51.11 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=55.4
Q ss_pred cCeEEEEcCChhhHHHHHHHH-HhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISGMQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.++|+|+|+|+.|...++.|. ..|+.+|+|++.+ ..|++..++++++..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5889999998642 3478888888765432 4443322 1
Q ss_pred cchhhhcCCceEEEecCC
Q 001301 198 LTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~ 215 (1104)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 23467899999998855
No 222
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.86 E-value=2.4 Score=48.58 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=28.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 78888853
No 223
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.82 E-value=0.84 Score=52.75 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCC-c-----eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC-CCcE-
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVA- 190 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGV-g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN-p~V~- 190 (1104)
.+|.|||+ |.+|+.+|-.|+..|+ + .|.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 58999998 9999999999999997 4 688887421 1223444444555554 3322
Q ss_pred EEEeecccchhhhcCCceEEEecC
Q 001301 191 ISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 191 V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
++... =+.+.+++.|+||.+..
T Consensus 67 ~~i~~--~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATT--DPEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEec--ChHHHhCCCCEEEEeCC
Confidence 22221 13467889999998865
No 224
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.65 E-value=2.2 Score=48.21 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|-+|..+|..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999998 78898864
No 225
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.65 E-value=1.7 Score=52.44 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=62.7
Q ss_pred cCeEEEEcCCh-hhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
..+|+|.|..| +|+++++.|...|. +|+.+|..... . + . .+..+...-.++....+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~----------------~-~-~----~~~~~~~~~~~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG----------------R-K-E----NLVHLFGNPRFELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc----------------c-H-h----HhhhhccCCceEEEECc
Confidence 45799999655 99999999999996 67777743210 0 0 0 01111111133444444
Q ss_pred cchhhhcCCceEEEecC--C---------------HhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 198 LTKEKLSDFQAVVFTDI--S---------------LEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~--~---------------~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+.+..+.++|+||-+.. . ......+-++|++++ +.||.+++...||
T Consensus 177 i~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg 239 (436)
T PLN02166 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYG 239 (436)
T ss_pred cccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhC
Confidence 44445667898885432 0 111245667899998 7899988877766
No 226
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.62 E-value=1 Score=47.86 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=52.0
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.... ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 357789999996 9999999999998875 78887533 234555555554322 23
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccCCH
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 626 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 626 (1104)
.+.... ..+ .+.+ .+.+.++|+||+|+-..
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCC
Confidence 333221 111 1111 24567899999987543
No 227
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.50 E-value=1.6 Score=49.62 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
++|.|||+|..|..+|.+|+++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 799999654
No 228
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.44 E-value=0.78 Score=52.91 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||.++++.|...|. +++.+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999987777 7777764
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=88.44 E-value=3.3 Score=42.89 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=60.0
Q ss_pred EEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001301 122 ILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 200 (1104)
Q Consensus 122 VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 200 (1104)
|+|+|+ |.+|..+++.|+..| .+++.+=. + ..|++. .+.+++ ...++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------~---------~~~~~~--------~~~~~~--~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------S---------PSKAED--------SPGVEI--IQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------S---------GGGHHH--------CTTEEE--EESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------C---------chhccc--------cccccc--ceeeehh
Confidence 799997 779999999999999 46665321 1 112222 554444 4443322
Q ss_pred -----hhhcCCceEEEecCC----HhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 201 -----EKLSDFQAVVFTDIS----LEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 201 -----e~l~~~dvVV~~~~~----~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+.++++|+||.+..+ ......+-+.|++.+.+ .+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK-RVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS-EEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc-cceeeeccccCC
Confidence 356789999988752 44456777888888832 566656666443
No 230
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.40 E-value=1.3 Score=53.17 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=75.6
Q ss_pred eEEEEcCChhhH-HHHHHHHH----hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 121 NILISGMQGLGA-EIAKNLIL----AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGs-eiaKnLvl----aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+|.|||.|+.-+ ++.+.|+. .+++.|+|+|-|. ...|.. =...+.+.+.+.++..+|+..+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999755 67777776 5789999999763 222211 1223455566777777877655
Q ss_pred cccchhhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 196 TELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
+ -++-+.+.|+||.+.. ..+.+..-.++..++| ++...+.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G----i~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG----VIGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC----CccccCCCcchHHHh
Confidence 4 3456889999998865 4556666667888888 445788888886554
No 231
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.34 E-value=1.4 Score=49.56 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.6
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..++|+|+|+||+|..++..|...|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999996 8999874
No 232
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.25 E-value=0.87 Score=48.09 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+|.|+|+|..|.-||-.++++|. .++|+|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 68999999999999999999996 899999744
No 233
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.18 E-value=1.4 Score=57.94 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=59.7
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhC-Cc------------eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH
Q 001301 118 FASNILISGMQGLGAEIAKNLILAG-VK------------SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE 184 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaG-Vg------------~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e 184 (1104)
+.++|+|+|+|.+|..++.+|+..+ +. .+++.|. ...+|+.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2444442 22344433332
Q ss_pred hCCCcEEEEe-ecccc--hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 185 LNNAVAISAL-TTELT--KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 185 LNp~V~V~~~-~~~l~--~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
.|.++.... ..+.. .+++++.|+||.|... ..-..+...|.++| +.++...
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~ek 679 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTAS 679 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEECc
Confidence 344322111 11111 1345789999998854 44567888999999 7787653
No 234
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.15 E-value=2 Score=51.52 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=44.0
Q ss_pred ccCCCCCCCCchhHHHHhhhhhccC-HH-H-HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 86 IMGLGNGNPSDIDEDLHSRQLAVYG-RE-T-MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 86 ~~~~~~~~~~~~d~~~Y~RQi~l~G-~e-~-q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+.+.++......+++|--...+|- .. + ...+...+|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus 176 v~~vn~s~~K~~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 176 AINVNDSVTKSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred EEecCCcccCccccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3444444333444445543333341 11 1 113588999999999999999999999999 699988644
No 235
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=88.14 E-value=2.6 Score=41.30 Aligned_cols=89 Identities=22% Similarity=0.192 Sum_probs=52.6
Q ss_pred eEEEEc-CChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC----CcEEEEe
Q 001301 121 NILISG-MQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN----AVAISAL 194 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp----~V~V~~~ 194 (1104)
||.|+| .|-+|.++++.|... .+.-+.++.... ..|+ .+.+..| .-.+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~--------~~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGK--------PLSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTS--------BHHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCC--------eeehhccccccccceeEe
Confidence 699999 666999999998873 233333333221 1344 2333433 2233333
Q ss_pred ecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 195 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
. .+.+.+.+.|+|++|..+... ..+...+.+.| +++|.
T Consensus 58 ~--~~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~ViD 95 (121)
T PF01118_consen 58 D--ADPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVID 95 (121)
T ss_dssp E--TSGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEEE
T ss_pred e--cchhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEEe
Confidence 3 445567899999999865444 44555557888 66665
No 236
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.13 E-value=2.3 Score=51.41 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=72.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
++|+|+|+|+.|..+|+.|...|. .+++.|..... +...+...|.+. .+++..- ....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence 479999999999999999999997 78888854321 122223345544 2444321 1111
Q ss_pred h----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001301 200 K----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 200 ~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
. ..+.++|+||.+..- +....+-..+++.+ +|++.-...- ...... .+-..|.=++|....+.++..|
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi-~~~~~~~~~a~~~~--i~v~~~~~~~--~~~~~~-~~~I~VTGT~GKTTTt~ml~~i 130 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGI-PWDHPTLVELRERG--IEVIGEIELA--WRALKH-IPWVGITGTNGKTTVTALLAHI 130 (459)
T ss_pred hhhhhHHhhcCCEEEECCCC-CCCCHHHHHHHHcC--CcEEEhHHHH--HHhhcC-CCEEEEeCCCchHHHHHHHHHH
Confidence 0 256789999885531 11223455678889 8887632211 111111 1234455566776665555554
No 237
>PRK07574 formate dehydrogenase; Provisional
Probab=88.09 E-value=0.6 Score=55.19 Aligned_cols=35 Identities=40% Similarity=0.568 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||+|.||..+++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5888999999999999999999999998 7888774
No 238
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.07 E-value=1.7 Score=51.77 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCh
Confidence 567899999999999999999999998 688887553
No 239
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.05 E-value=0.63 Score=53.61 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.|.+++|.|||.|.||.++++.|...|+ +++.+|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEEC
Confidence 5889999999999999999999988887 677665
No 240
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.97 E-value=0.82 Score=52.31 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=49.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC----cEEEEe
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA----VAISAL 194 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~----V~V~~~ 194 (1104)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-. +.+++..+.-|....+. +++...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~-------------------~~~~~G~a~DL~~~~~~~~~~~~i~~~ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN-------------------EEKAEGVALDLSHAAAPLGSDVKITGD 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc-------------------cccccchhcchhhcchhccCceEEecC
Confidence 3799999999999999999999999 99999853 11222222234433332 333321
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
-+.+.+++.|+||.+..
T Consensus 62 ---~~y~~~~~aDiVvitAG 78 (313)
T COG0039 62 ---GDYEDLKGADIVVITAG 78 (313)
T ss_pred ---CChhhhcCCCEEEEeCC
Confidence 12356789999998863
No 241
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.94 E-value=0.98 Score=52.14 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=50.3
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
++-.+|.|+|+ |.+|+.++-.|+..|. ..|.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 34459999999 9999999999987776 47999996211 111 1133334444555443
Q ss_pred ecccc-hhhhcCCceEEEecC
Q 001301 195 TTELT-KEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~-~e~l~~~dvVV~~~~ 214 (1104)
...-+ .+.+++.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 32122 467889999998754
No 242
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.92 E-value=1.9 Score=42.63 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=58.5
Q ss_pred eEEEEcC-ChhhHHHHHHHHH-hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC-CCcEEEEeecc
Q 001301 121 NILISGM-QGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVAISALTTE 197 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 197 (1104)
||.|+|+ |-.|.++++.+.. .|+.=+..+|... ++.. ..|+| .+..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~~------g~d~g---------~~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAKV------GKDVG---------ELAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STTT------TSBCH---------HHCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cccc------cchhh---------hhhCcCCcccccc---hh
Confidence 7999999 8899999999998 7777677777644 1110 12333 111122 122222 12
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
+ ++.+...||||+.+ ..+.....-++|.+++ +|+|.+.
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGT 98 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGT 98 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEEC
Confidence 2 34556689999988 6667777888999999 8888744
No 243
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=87.84 E-value=1.1 Score=50.35 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
..+++++|+|+||+|..++..|+..|. +++++|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~ 147 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIAN 147 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 346789999999999999999999886 788876
No 244
>PLN02602 lactate dehydrogenase
Probab=87.82 E-value=1.6 Score=51.08 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=29.9
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.||.|||+|.+|+.++-.|+..|++ ++|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 6999999999999999999999984 68999973
No 245
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.74 E-value=1.6 Score=50.27 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHH-hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+...++|+|+|+|+.|..+++.+.+ .|+.+|++++. ...|++..++.+++... .+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------------------s~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------------------DPAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcCC--ceEEe
Confidence 3457899999999999999987665 68899999874 23578888888776422 23322
Q ss_pred ecccchhhhcCCceEEEecCC
Q 001301 195 TTELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~ 215 (1104)
. . .++.+.++|+||.|+.+
T Consensus 181 ~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred C-C-HHHHHhcCCEEEEeeCC
Confidence 1 1 23467899999887764
No 246
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.72 E-value=1.6 Score=48.14 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-C-cchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGS-G-ALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~-G-giG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++++|.|+ | |||..+++.|+..|. +++++|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEe
Confidence 34678999996 6 899999999999998 577765
No 247
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.67 E-value=2.3 Score=51.20 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=61.7
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= + .+.+++..+.+.+ +.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCeE--EEC
Confidence 567899999999999999999999888 5788875321 1 2233333333332 222
Q ss_pred cc------chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 197 EL------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 197 ~l------~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
+. ....+.+++.||.+..+......+...|++.+ .+-|.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~--~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG--AKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 22 12346688999988776565566667788887 444443
No 248
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.63 E-value=2 Score=51.23 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=46.2
Q ss_pred CCccCCCCCCCCchhHHHHh-hhhhccCHHHHHH-----hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 84 SSIMGLGNGNPSDIDEDLHS-RQLAVYGRETMRR-----LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 84 ~~~~~~~~~~~~~~d~~~Y~-RQi~l~G~e~q~k-----L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
-+.+++.++......+++|- +|- +| ++..+ +...+|+|+|+|.+|..+++.+...|+ +++++|.+
T Consensus 164 ~Pv~~vnds~~K~~~dn~~g~g~s-~~--~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 164 FPAINVNDSVTKSKFDNLYGCRES-LI--DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCEEEecchhhcccccccchhchh-hH--HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 34456655545555566773 443 33 33333 568899999999999999999999999 68888764
No 249
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.63 E-value=1.7 Score=47.94 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=45.0
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
++++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999985 7899999999999997 788876432 233444555666666666
Q ss_pred EeeecccCCc
Q 001301 593 TEALQIRANP 602 (1104)
Q Consensus 593 i~~~~~~v~~ 602 (1104)
+..+..++.+
T Consensus 61 ~~~~~~D~~~ 70 (265)
T PRK07062 61 LLAARCDVLD 70 (265)
T ss_pred EEEEEecCCC
Confidence 6666555543
No 250
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.61 E-value=2.4 Score=51.15 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=60.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|..... . ...+|.+....+ ..+..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~------------------~---~~~~l~~~~~gi--~~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP------------------E---RVAQIGKMFDGL--VFYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc------------------h---hHHHHhhccCCc--EEEeC
Confidence 457799999999999999999999997 68888853321 0 012344322233 33334
Q ss_pred ccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEE
Q 001301 197 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
...+..+.++|+||.+.. +.. ..+-..+++++ +|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~~--~p~~~~a~~~~--i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISER--QPDIEAFKQNG--GRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCCC--CHHHHHHHHcC--CcEEE
Confidence 434455678999998764 222 23455668889 88875
No 251
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.61 E-value=1.9 Score=52.57 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred HHHHHHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHh
Q 001301 509 KLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 587 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~ 587 (1104)
....-+.+++|+|-|+ |.+|+|+++.++..+. .+|+++|.|. .|-..+...++..
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E-------------------~~~~~i~~el~~~ 298 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDE-------------------YKLYLIDMELREK 298 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCch-------------------HHHHHHHHHHHhh
Confidence 4577899999999985 5699999999999998 9999997553 4556678888888
Q ss_pred CCCcEEeeecccCCccccccchhhhhcc--CCEEEEcc
Q 001301 588 NPHLNTEALQIRANPETENVFNDTFWEN--LNVVVNAL 623 (1104)
Q Consensus 588 np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~al 623 (1104)
.|..++..+-..+.+.. .+ ...+++ .|+|+-|.
T Consensus 299 ~~~~~~~~~igdVrD~~-~~--~~~~~~~kvd~VfHAA 333 (588)
T COG1086 299 FPELKLRFYIGDVRDRD-RV--ERAMEGHKVDIVFHAA 333 (588)
T ss_pred CCCcceEEEecccccHH-HH--HHHHhcCCCceEEEhh
Confidence 89899999988887532 12 234555 88998763
No 252
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.56 E-value=0.99 Score=53.23 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||+|.||+.+++.|...|+ ++...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999999998 8888874
No 253
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.51 E-value=2.7 Score=46.19 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=48.1
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+..+|.|||+|.+|..+++.|...|. ..+.+++.. ...|++. +.+..+ +.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~----~~~~~~-~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQ----LQARYN-VST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHH----HHHHcC-cEE--e
Confidence 45689999999999999999998873 234444321 0113332 222222 222 2
Q ss_pred ecccchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 195 TTELTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
. + ..+.+.+.|+||.|..+......+.++
T Consensus 58 ~-~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 T-D-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred C-C-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 1 1 234577899999998765544444443
No 254
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.42 E-value=1.2 Score=45.85 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=56.5
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
||.|+|+|..|+.+|..|+..|. ++++...|.=....|+.+-. -....|++++...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~~- 56 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPEN- 56 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEETT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCcc-
Confidence 68999999999999999999996 88888766411111111000 0001122222211
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc--ccceE
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--QKPLL 644 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--~~pli 644 (1104)
..+..+- .+.+++.|+||-|+-...-|..+.+..... +.+++
T Consensus 57 i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 57 IKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp EEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred cccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE
Confidence 1111111 245688999999999888888888766543 44555
No 255
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.41 E-value=1.4 Score=52.87 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=61.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+.+|+|+|+|..|..+++.|...| -.+++.|..... .+...+ ..+-+.+++ ...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~--------------------~~~~~~i~~--~~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQ--------------------PLLLEGIEV--ELG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhh--------------------hhhccCcee--ecC
Confidence 44889999999999999999999999 589999975543 221111 112233333 333
Q ss_pred ccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceE
Q 001301 197 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFI 236 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI 236 (1104)
....+.+..+|+||..-. +.... +-+.+++.| +|++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCCH--HHHHHHHcC--CcEE
Confidence 333367889999998764 33322 556677888 7765
No 256
>PRK09242 tropinone reductase; Provisional
Probab=87.35 E-value=1.6 Score=47.94 Aligned_cols=86 Identities=17% Similarity=0.382 Sum_probs=54.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
++++++++|+| .|+||.++++.|+..|. ++++++.+. .+.+.+.+.+...+|..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 36678999998 58999999999999997 788886321 23344555666666667
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++..... ..+. ...+...|+||++.
T Consensus 61 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 61 EVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 77777666654221 1111 01234567776664
No 257
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.35 E-value=2.2 Score=49.37 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=56.2
Q ss_pred hcCeEEEEcCChhhHHHHHHHH-HhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 118 FASNILISGMQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
...+|+|+|+|+.|...+..+. ..|+++|+++|.+ ..|++..++++++..+ +++..+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeCC
Confidence 4678999999999998888765 6799999998753 3477777777765432 34433321
Q ss_pred ccchhhhcCCceEEEecCCHh
Q 001301 197 ELTKEKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~ 217 (1104)
.++.+.+.|+||.|+.+..
T Consensus 186 --~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 186 --ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred --HHHHHhcCCEEEEccCCCC
Confidence 2456789999999886553
No 258
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.33 E-value=5.4 Score=45.24 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.6
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.++|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 78898864
No 259
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.31 E-value=2 Score=51.08 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+.+++|+|+|+|.+|.-+++.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCCh
Confidence 578899999999999999999999997 688888654
No 260
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.30 E-value=0.71 Score=52.89 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 4789999999999999999998887887 78888753
No 261
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.18 E-value=1.2 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=26.7
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+|.|||+|.+|..++..|...|. ....++++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEc
Confidence 579999999999999999999884 113567776
No 262
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.15 E-value=0.92 Score=41.72 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=34.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+..++++|+|.|+.|..++..|...|...++++|.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4778999999999999999999999998999999983
No 263
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=87.08 E-value=1.7 Score=48.53 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=72.3
Q ss_pred CcEEEEcC-CcchHHHHHHHHhc-ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 517 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.||.|+|| |.+|..+++.+... ++ .-..++|.+. +...+. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~---~~~~~~------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPG---SPLVGQ------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCC---cccccc------------------------CCCCcc
Confidence 48999999 99999999988764 45 3334565442 111000 001111
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCCcccccCcCCCCCC
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPE 674 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~~t~~y~~~~~p~~ 674 (1104)
.+ .+ + ++.+..+|+||+++ .+.+-..+...|.+.++|++ .|+.|+.-. ++-.- .. ..
T Consensus 50 ~~-----~d----l-~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s~~---------~~~~l-~~-aa 106 (257)
T PRK00048 50 IT-----DD----L-EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFTEE---------QLAEL-EE-AA 106 (257)
T ss_pred cc-----CC----H-HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCCHH---------HHHHH-HH-Hh
Confidence 11 11 1 23345789999998 56666778889999999999 457665422 00000 00 11
Q ss_pred CCCCcccccCCCCChhhHHHHHHH
Q 001301 675 KQAPMCTVHSFPHNIDHCLTWARS 698 (1104)
Q Consensus 675 ~~~p~Ct~~~fP~~~~hci~wAr~ 698 (1104)
+..|.....+|-..+.--.+.++.
T Consensus 107 ~~~~v~~s~n~s~g~~~~~~l~~~ 130 (257)
T PRK00048 107 KKIPVVIAPNFSIGVNLLMKLAEK 130 (257)
T ss_pred cCCCEEEECcchHHHHHHHHHHHH
Confidence 345555666666655555555554
No 264
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.96 E-value=1.2 Score=51.50 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=62.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC-----cEEEEe
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA-----VAISAL 194 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~-----V~V~~~ 194 (1104)
++|.|||+|..|+.+|.+++.+|. .++++|.+.-.... .+.+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 579999999999999999999997 78899964421111 112222233333332211 011211
Q ss_pred ecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 195 TTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
. .+ ++.+.+.|+|+-+.. +.+.+..+-+-..+.-+|-.+|.+.+.|+
T Consensus 75 ~-~l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-TI-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred C-CH-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 1 11 246789999998864 56555544433333221124677777765
No 265
>PLN03139 formate dehydrogenase; Provisional
Probab=86.95 E-value=0.66 Score=54.84 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||+|.||..+++.|..+|+ +++.+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 7777774
No 266
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.93 E-value=1.5 Score=50.17 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+|.|+|+|.+|+.+++.|+..|. .+++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 78888865
No 267
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=86.90 E-value=2 Score=50.87 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=53.2
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCce------EEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC-CCc-
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKS------VTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAV- 189 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~------itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN-p~V- 189 (1104)
-.+|.|+|+ |.+|+.+|-.|+..|+-. |+|+|. |+.+.|++.-+--|+..- |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcC
Confidence 358999999 999999999999999843 666654 234456666666666554 432
Q ss_pred EEEEeecccchhhhcCCceEEEecC
Q 001301 190 AISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 190 ~V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
.+.+... +.+.+++.|+||.+..
T Consensus 107 ~v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 107 EVSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred ceEEecC--CHHHhCCCCEEEECCC
Confidence 2332222 3467899999999765
No 268
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.80 E-value=2 Score=46.90 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=44.3
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
+++++|.| .||||.++++.|+..|. ++++++.+. .+...+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 46789998 89999999999999986 788776431 12334445556667777777
Q ss_pred eecccCCc
Q 001301 595 ALQIRANP 602 (1104)
Q Consensus 595 ~~~~~v~~ 602 (1104)
.+..++.+
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 77666654
No 269
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.77 E-value=0.69 Score=42.56 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+..++++|+|+|+.|..++..|...|. .+++++|.|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rd 56 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRD 56 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCC
Confidence 678899999999999999999999976 689999873
No 270
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.74 E-value=1.3 Score=50.48 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=28.2
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+|.|||+|-+|..++++|...|. .|+++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 688888643
No 271
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.71 E-value=1.8 Score=41.64 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=56.3
Q ss_pred EEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeecc
Q 001301 519 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 598 (1104)
Q Consensus 519 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~ 598 (1104)
|+|+|+|.+|-++++.|...|. +++++|.|.-. .+.+++.. +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999654 89999976521 22222222 223333
Q ss_pred cCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc
Q 001301 599 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 638 (1104)
Q Consensus 599 ~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~ 638 (1104)
...+ ...+...-+++++.|+.++++......+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3332 2233344567899999999999888877777765
No 272
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.60 E-value=0.98 Score=41.99 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=53.5
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEe-cCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~ii-D~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
||.+||+|.+|..+++.|+..|+ ...+++++ +.+. .|+ +.+.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-------------------HHH----HHHHHhhc-cccccC
Confidence 68999999999999999999996 22566644 3211 122 22223332 121110
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhc-ccccccceEe
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQR-CLYFQKPLLE 645 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~-c~~~~~pli~ 645 (1104)
+ +.+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~-----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------D-----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------E-----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------C-----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 1 134567899999999888777766666 2333445554
No 273
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=86.53 E-value=1.8 Score=49.46 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=49.0
Q ss_pred EEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc---EEee
Q 001301 519 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL---NTEA 595 (1104)
Q Consensus 519 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~---~i~~ 595 (1104)
|.|||+|++|+.++-.|+..|++ .+|+++|.+ +.|+...+.-|....+.. ++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 579999742 345555556666655431 2211
Q ss_pred ecccCCccccccchhhhhccCCEEEEccC
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
..+ .+-++++|+||.|..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 123678999998864
No 274
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.47 E-value=0.86 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4778999999999999999999999998 8888885
No 275
>PLN02427 UDP-apiose/xylose synthase
Probab=86.40 E-value=3.2 Score=48.87 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.4
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+++..+|||.|+ |-+|+.+++.|+..|--+|..+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 456678999996 569999999999985336777764
No 276
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.39 E-value=2.4 Score=52.43 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=27.0
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.++.|+|.| .|+||..+++.|+..|. ++++++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~R 112 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVR 112 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeC
Confidence 446789998 59999999999999997 6776653
No 277
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.39 E-value=1.9 Score=49.44 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=56.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHH-hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+....+|+|+|+|+.|...++.+.. .|+.+|.++|.+ ..|++..+++++..+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 3456899999999999999999964 688999998752 3478888888876533 222
Q ss_pred ecccchhhhcCCceEEEecCC
Q 001301 195 TTELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~ 215 (1104)
...+ ++.+.++|+||.|+.+
T Consensus 179 ~~~~-~~av~~aDiVitaT~s 198 (304)
T PRK07340 179 PLDG-EAIPEAVDLVVTATTS 198 (304)
T ss_pred ECCH-HHHhhcCCEEEEccCC
Confidence 1222 3467899999998865
No 278
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.22 E-value=1.7 Score=52.30 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=57.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
++|+|+|+|.+|..+++.|...|. .++++|.|.- +++ .+++ ...+..+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~------~v~vid~~~~-------------------~~~----~~~~---~~~~~~~ 48 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN------DVTVIDTDEE-------------------RLR----RLQD---RLDVRTV 48 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------cEEEEECCHH-------------------HHH----HHHh---hcCEEEE
Confidence 379999999999999999999987 7888875321 111 1111 1123333
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
...... ...+...-.+++|.||.++++...-..+...++.+
T Consensus 49 ~gd~~~--~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 49 VGNGSS--PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred EeCCCC--HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 333221 12222223578999999999888777776667664
No 279
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.21 E-value=1.2 Score=40.11 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=38.5
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN 186 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN 186 (1104)
||+|||.|.+|+|+|..|...|. ++||++...- ++ ...+..=++.+.+.|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999996 8888875332 11 1223334455666777664
No 280
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.20 E-value=3 Score=47.45 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=29.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
++|.|||+|-.|..+|.+|+.+|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 78899864
No 281
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.07 E-value=0.67 Score=49.84 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|++++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 3678899999999999999999999997 88888754
No 282
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.07 E-value=2.3 Score=53.68 Aligned_cols=85 Identities=14% Similarity=0.271 Sum_probs=61.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- |++ .+++. ..+ ++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCe--EEEEeC
Confidence 5799999999999999999999998 5888887542 333 23322 222 333333
Q ss_pred c-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 199 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 199 ~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
+ + .-++++++||++.++.+....+-..+|++.+
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p 490 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFP 490 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 2 2 3456789999999988888888889998864
No 283
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.99 E-value=2.3 Score=49.23 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=78.4
Q ss_pred CccCchhhhhcchhhHHHHHhhccC------cccc-c-ceeeccCCCCCCCCCCCCCCCCCccCcchhhhhc--cCHHHH
Q 001301 442 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-L-QFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISV--FGSKLQ 511 (1104)
Q Consensus 442 ~el~PvaA~iGGiaAQEVIKaiTgK------f~PI-~-q~l~fD~~e~lp~~~~~~~~~~~~~~RYdrqi~l--~G~~~q 511 (1104)
+.+.-|.+.++|.- --.+|.++.- --|- + ..+.||.-.+.|-.-++...+ +.+ |-=.. .+....
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~l----T~~-RTaa~sala~~~l 122 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYL----TQI-RTGALSGVATKYL 122 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchh----hhh-hHHHHHHHHHHHh
Confidence 44555666655421 1247876542 2232 1 356677776666432222221 000 11011 122222
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHH-hcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH 590 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~ 590 (1104)
.+-...+++|||+|+.|-..+..++ ..|+ .++.|+|.+ ..|++..++.+.... .
T Consensus 123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~ 177 (325)
T PRK08618 123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-N 177 (325)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-C
Confidence 3334678999999999999988775 4677 889988643 245666666665432 2
Q ss_pred cEEeeecccCCccccccchhhhhccCCEEEEccCCH
Q 001301 591 LNTEALQIRANPETENVFNDTFWENLNVVVNALDNV 626 (1104)
Q Consensus 591 ~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 626 (1104)
+++..+.. . .+...+.|+||+|+-+.
T Consensus 178 ~~~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 178 TEIYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 33333211 1 23457899999998653
No 284
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.91 E-value=0.72 Score=46.76 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.+++|+|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 457899999999999999999999885 688888743
No 285
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.76 E-value=1.1 Score=51.92 Aligned_cols=74 Identities=8% Similarity=0.109 Sum_probs=48.6
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCc------eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CC
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVK------SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NA 188 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg------~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~ 188 (1104)
.+|.|||+ |.+|+.+|..|+..|+- .|.|+|-.. + +.|++.-+--|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~----~-------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ----A-------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC----c-------------ccccceeehhhhhccccccCc
Confidence 58999999 99999999999998874 699998521 0 112222223344333 23
Q ss_pred cEEEEeecccchhhhcCCceEEEecC
Q 001301 189 VAISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 189 V~V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.|. .+ +.+-+++.|+||.|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3332 22 3467889999998865
No 286
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.76 E-value=2.8 Score=47.97 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=29.3
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV-KSVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~ 151 (1104)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888885
No 287
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.71 E-value=5.6 Score=43.24 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=49.3
Q ss_pred eEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC----CcEEEEee
Q 001301 121 NILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN----AVAISALT 195 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp----~V~V~~~~ 195 (1104)
+|.||| +|.+|+.+++.|+..| ..+++++.+ ..+++...+....... .+++...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~- 60 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA- 60 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe-
Confidence 699997 8999999999999999 577777642 1233333332211111 0112211
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
. ..+.+...|+||+|.-+......+.++
T Consensus 61 -~-~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 61 -D-NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -C-hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 1 235677899999998655544444444
No 288
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.68 E-value=4.1 Score=41.90 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=28.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+|.|+|+|..|+.+|.-|+..| ..++|+..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6999999999999999999999 7899987654
No 289
>PRK09242 tropinone reductase; Provisional
Probab=85.63 E-value=3.8 Score=45.01 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=44.8
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+|++++++|.|+ ||+|.++++.|+..|. +|++++.+ ..+++...+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 466789999985 6899999999999997 57777642 12445556667777676666655
Q ss_pred eccc
Q 001301 195 TTEL 198 (1104)
Q Consensus 195 ~~~l 198 (1104)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 4443
No 290
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.57 E-value=3.3 Score=49.87 Aligned_cols=126 Identities=20% Similarity=0.218 Sum_probs=71.1
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|.|++|..+|+.|...|. ++++.|.+.-.. ....+.|.+.. +++ ...
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~--~~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKV--ICG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEE--EeC
Confidence 457889999999999999999999997 688887532110 11223444432 333 222
Q ss_pred ccchhhhcC-CceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001301 197 ELTKEKLSD-FQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 197 ~l~~e~l~~-~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
....+.+.. +|+||.+.. ......+-+.++++| +|++.-.- +.... .+ .+--.|.=++|....+.++..|
T Consensus 59 ~~~~~~~~~~~d~vV~s~g-i~~~~~~~~~a~~~~--i~v~~~~e--l~~~~-~~-~~~I~VTGT~GKTTTt~ll~~i 129 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPG-IPYTNPMVEKALEKG--IPIITEVE--LAYLI-SE-APIIGITGSNGKTTTTTLIGEM 129 (447)
T ss_pred CCCHHHhcCcCCEEEECCC-CCCCCHHHHHHHHCC--CcEEeHHH--HHHHh-cC-CCEEEEeCCCchHHHHHHHHHH
Confidence 222233444 898888653 111234566778899 88885221 21111 11 1223444456666555555544
No 291
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.56 E-value=1.7 Score=51.18 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+...+|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999863
No 292
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.51 E-value=3 Score=48.27 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred CcEEEEcC-CcchHHHHHHHHhc-ccccCCCcceEEecC
Q 001301 517 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~iiD~ 553 (1104)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 7777764
No 293
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.49 E-value=2.3 Score=51.32 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=73.3
Q ss_pred Hhhc-CeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE
Q 001301 116 RLFA-SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA 193 (1104)
Q Consensus 116 kL~~-s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~ 193 (1104)
++.+ .+|+|+|+|+.|...+..|...|- -.+++.|.... . . ..++|++ .++ .
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~----~-------------~----~~~~l~~---g~~--~ 56 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET----P-------------P----GQEQLPE---DVE--L 56 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC----c-------------h----hHHHhhc---CCE--E
Confidence 4556 789999999999999999999865 47888885321 0 0 0123432 333 3
Q ss_pred eecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceecc
Q 001301 194 LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIAS 272 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~ 272 (1104)
+....+++.+.++|+||.+.. +.. ...-..++++| ||++.=. .+.+.+. . .+-..|.=++|....+.++..
T Consensus 57 ~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~~ 128 (438)
T PRK04663 57 HSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVGDI--ELFAWAV-D-KPVIAITGSNGKSTVTDLTGV 128 (438)
T ss_pred EeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHhhc-C-CCEEEEeCCCCHHHHHHHHHH
Confidence 333344566788999888754 222 23445668889 8887522 1222221 1 223344456677666555555
Q ss_pred c
Q 001301 273 I 273 (1104)
Q Consensus 273 i 273 (1104)
+
T Consensus 129 i 129 (438)
T PRK04663 129 M 129 (438)
T ss_pred H
Confidence 4
No 294
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.48 E-value=2.7 Score=48.30 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeC
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~ 151 (1104)
+|.|||+|.+|+.+|-.|+..|+ ..+.|+|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 295
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.45 E-value=3.5 Score=46.76 Aligned_cols=104 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH----hCCCcEEEE--
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE----LNNAVAISA-- 193 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e----LNp~V~V~~-- 193 (1104)
.+|.|||+|..|+.+|..|+..|. .++++| +-..+.+.+.+++.+ +...++-..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d-------------------~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~ 63 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVD-------------------VSEEILKNAMELIESGPYGLRNLVEKGKMS 63 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEe-------------------CCHHHHHHHHHHHHhhhhhHHHHHHcCCCC
Q ss_pred ----------eecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 194 ----------LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 194 ----------~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
....-+.+.+.+.|+||.|.. +.+....+-+-....-.+-.+|.+.+.|+
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~ 124 (291)
T PRK06035 64 EDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI 124 (291)
T ss_pred HHHHHHHHhCcEeeCCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC
No 296
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.32 E-value=3.7 Score=47.35 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=28.0
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEe
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHD 150 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD 150 (1104)
|++++|.|||+|..|..+|++|..+|+. +.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5678999999999999999999999984 44433
No 297
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.30 E-value=3.4 Score=46.77 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=27.6
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+|+|+|+|.+|+.+|..|+.+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 7999886
No 298
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.28 E-value=3 Score=50.75 Aligned_cols=92 Identities=17% Similarity=0.073 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|+|-.|..+++.|...|.. +++.|.+... + ... ...|++ .+. ....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~--~-------------~~~----~~~l~~---~~~--~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAV--E-------------ARE----VGALAD---AAL--LVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCcc--c-------------chH----HHHHhh---cCE--EEeC
Confidence 4578999999999999999999999985 7777754321 0 001 112433 222 2223
Q ss_pred ccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEE
Q 001301 197 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.-.++.+.++|+||.+.. +. ...+-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~--~~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISP--YRPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCC--CCHHHHHHHHcC--CcEEE
Confidence 334566788999998754 22 223455678889 88886
No 299
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.22 E-value=6.3 Score=44.64 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=29.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|..|..+|..|+..|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 69999854
No 300
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.18 E-value=5 Score=49.08 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=71.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch---HHHHHHHHHHHh-CCCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN---RALASIQKLQEL-NNAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~---Kaea~~~~L~eL-Np~V~V~~~~ 195 (1104)
++|.+||+|-.|..+|.||+..|. +++++|.+.-....+... ...-|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 788988643211111110 0000110 111222223222 3565555544
Q ss_pred ccc-ch-------hhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 196 TEL-TK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 196 ~~l-~~-------e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
..- .+ ..+..=|+||++.- +++...++.+.+.++| +.||.+.+.|-
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12344578888765 5677788899999999 88998887764
No 301
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.13 E-value=4.3 Score=46.43 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=29.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+|.|||+|.+|..+|..++..|.+.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999996
No 302
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.07 E-value=3.2 Score=50.91 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=60.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|+|+.|..+|+.|...|. +++..|..... + ..+.|.+.-+.+++ ...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~--~~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEF--VGG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEE--EeC
Confidence 456789999999999999999999997 68888853210 0 01234443333343 333
Q ss_pred ccchhhhcCCceEEEecC-CHh--HhhhHHHHHHHcCCCcceEE
Q 001301 197 ELTKEKLSDFQAVVFTDI-SLE--KAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~-~~~--~~~~ln~~c~~~~~~ipfI~ 237 (1104)
...++.+.++|+||.+.. +.. ....+-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~ 102 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVWG 102 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEEE
Confidence 344566778999998753 221 1113444567888 88883
No 303
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.06 E-value=2.4 Score=42.29 Aligned_cols=82 Identities=24% Similarity=0.152 Sum_probs=45.6
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
...+|.|||+|-+|..+++.|..+|. .|.-+- . |..+.++++.+.-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~--------------------s--rs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVY--------------------S--RSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEES--------------------S--CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE--------------------e--CCcccccccccccccccccc----
Confidence 45689999999999999999999996 333221 1 22344556666666554432
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHHHH
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDYCH 227 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~ 227 (1104)
..+.+...|+|+++.-+........+++.
T Consensus 62 -~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 -LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred -cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 23567889999998755444433444443
No 304
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.03 E-value=0.84 Score=48.01 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 112 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 112 e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.....|.+++|.|+|+|.+|.++|+-|...|. +|..+|...
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 33457899999999999999999999999999 888888643
No 305
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.02 E-value=3.8 Score=51.58 Aligned_cols=85 Identities=16% Similarity=0.300 Sum_probs=61.5
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5689999999999999999999999 5888887541 222 233322 22333333
Q ss_pred c-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 199 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 199 ~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
+ + .-++++++||.+.++.+....+-..+|++++
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p 490 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFP 490 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCC
Confidence 2 2 2466889999999988888888889999874
No 306
>PLN00016 RNA-binding protein; Provisional
Probab=85.00 E-value=4.1 Score=47.97 Aligned_cols=113 Identities=20% Similarity=0.324 Sum_probs=67.2
Q ss_pred HHhhcCeEEEE----cC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc
Q 001301 115 RRLFASNILIS----GM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV 189 (1104)
Q Consensus 115 ~kL~~s~VlIi----G~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V 189 (1104)
.+....+|||+ |+ |-+|..+++.|+..|. .|++++.+.-....+... + ...+.++...
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~----------~-----~~~~~~l~~~- 110 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKE----------P-----FSRFSELSSA- 110 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccC----------c-----hhhhhHhhhc-
Confidence 44556789999 86 5599999999999995 778777543211111000 0 0111122111
Q ss_pred EEEEeecccch--hhh--cCCceEEEecC-CHhHhhhHHHHHHHcCCCc-ceEEeeecceeEE
Q 001301 190 AISALTTELTK--EKL--SDFQAVVFTDI-SLEKAVEFDDYCHNHQPPI-AFIKSEVRGLFGN 246 (1104)
Q Consensus 190 ~V~~~~~~l~~--e~l--~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~i-pfI~~~~~G~~G~ 246 (1104)
.++.+..++.+ +.+ .++|+||.+.. .......+-++|++.| + .||..++.|.+|.
T Consensus 111 ~v~~v~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~g--vkr~V~~SS~~vyg~ 171 (378)
T PLN00016 111 GVKTVWGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPG--LKQFLFCSSAGVYKK 171 (378)
T ss_pred CceEEEecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEccHhhcCC
Confidence 13333333332 233 36899998754 4555667788999988 5 6888888777653
No 307
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.97 E-value=1.8 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=30.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++++|+|.| +|++|.++++.|+..|. ++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5677899998 79999999999999997 78888654
No 308
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.94 E-value=3.8 Score=46.95 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=41.6
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.|++++|+|.| .+|+|.++|+.|+..|. +|.+++.+ ..|++.+.+.|.+.++..++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 35677899988 56799999999999996 66666531 23666667777776665554443
No 309
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.85 E-value=2.6 Score=42.53 Aligned_cols=29 Identities=41% Similarity=0.493 Sum_probs=25.6
Q ss_pred EEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 122 ILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 122 VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
|+|+|+|++|+-+|-.|..+|. .+++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEc
Confidence 7899999999999999999887 4777764
No 310
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.82 E-value=1.8 Score=48.01 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 577889999985 8999999999999987 68888754
No 311
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=84.68 E-value=4.4 Score=49.77 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=29.3
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++.+|+..|. .+++.|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 479999999999999999999998 89999864
No 312
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.64 E-value=1.6 Score=50.24 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=29.5
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
..+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 4788887654
No 313
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.60 E-value=1.9 Score=47.41 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+++++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 56788999995 8999999999999997 777775
No 314
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.52 E-value=1.4 Score=44.79 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=51.6
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
++|+|+| +||||-++++.|+..|- .++++++.+ ....+...+.+.++..+ .+++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3688888 89999999999999987 688877644 11234444555555433 67777
Q ss_pred ecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 596 LQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 596 ~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..++..... ..++ .+.+..+|++|++.
T Consensus 57 ~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 57 IECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp EESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 7666553221 1111 12245677777664
No 315
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.52 E-value=1.6 Score=49.37 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.|++++|+|||.|. +|..+++.|...|. .+++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 47889999999999 99999999999987 888886
No 316
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.50 E-value=0.8 Score=52.46 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=29.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..||+|+|+||+|+.++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999986 78888753
No 317
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=84.36 E-value=3.4 Score=41.23 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhccc
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGV 540 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv 540 (1104)
.+.||.|||+|-+|..+++.|...|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC
Confidence 45699999999999999999999997
No 318
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.35 E-value=3.5 Score=50.51 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=58.2
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.+++|+|+|+|..|..+++.|...|. .+++.|... .+ .+.+++. .+.+ +...
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~----~~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA----LRPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH----HHHHHhC--CCEE--EcCc
Confidence 56799999999999999999999996 788887421 01 1123332 2332 2222
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
...+.+.++|+||.+..-. ....+-..+++.| +|++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~-~~~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFR-PTAPVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCC-CCCHHHHHHHHCC--CcEee
Confidence 2345677899999876411 1233456778899 88885
No 319
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.27 E-value=4.7 Score=44.96 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC--ceEEEEeC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV--KSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV--g~itLvD~ 151 (1104)
.+|.|||+|.+|..++..|...|. ..+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999984 45666653
No 320
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.26 E-value=3.6 Score=49.71 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=74.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+..|+|+|+|+.|..+|+.|...|. +++..|...- .+ ..+.|.+.++.+.+. ....
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~--~~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELR--CGGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEE--eCCC
Confidence 5679999999999999999999997 6888884320 00 112355544444443 3333
Q ss_pred chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceecccc
Q 001301 199 TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASIS 274 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i~ 274 (1104)
+.+.+.++|+||.+.. .+...-.-..+++++ +|++.-. .+.+.++ -.+--.|.=++|....+.++..|-
T Consensus 62 ~~~~~~~~d~vV~sp~-i~~~~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL 130 (448)
T PRK03803 62 DCELLVQASEIIISPG-LALDTPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEMA 130 (448)
T ss_pred ChHHhcCCCEEEECCC-CCCCCHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHHH
Confidence 4566778999988763 111223445667889 8888521 1122221 122334555677776666666553
No 321
>PLN02206 UDP-glucuronate decarboxylase
Probab=84.25 E-value=2.5 Score=51.13 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=28.3
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++||||.| +|-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 457899999 69999999999999987 7777764
No 322
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=84.24 E-value=2.2 Score=51.83 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=68.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch--HHHHHHHHHHHh-CCCcEEEEee-
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN--RALASIQKLQEL-NNAVAISALT- 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~--Kaea~~~~L~eL-Np~V~V~~~~- 195 (1104)
++|.|||+|..|..+|.||+..|. +|+++|.+.-....+... ...-|.+ -+....+.++.+ .|.+-+-...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799998754332222110 0000100 111222333333 3554443322
Q ss_pred cccch-------hhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 196 TELTK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 196 ~~l~~-------e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
....+ ..+..=|+||++.- ......+..+.+.++| +-|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 22111 12444578888765 4555566678888889 8899888777
No 323
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.21 E-value=3.2 Score=47.72 Aligned_cols=84 Identities=23% Similarity=0.200 Sum_probs=52.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec---
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT--- 196 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~--- 196 (1104)
.+|+|+|+|++|+-.+-.|.++| ..++++-.+. ++++ +++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~~----l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLEA----LKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHHH----HHhC--CeEEecCCCccc
Confidence 37999999999999999999999 7777653211 1222 2221 112221111
Q ss_pred -----ccchhhhcCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 197 -----ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 197 -----~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
..+.+.+..+|+||++.-+......+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1123556689999999877666666665544443
No 324
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.19 E-value=2.1 Score=46.53 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|++++++|+|+ |+||..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999996 9999999999999987 6888873
No 325
>PRK10537 voltage-gated potassium channel; Provisional
Probab=84.18 E-value=2.9 Score=49.68 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=56.9
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA 193 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~ 193 (1104)
+...++.||+|+|.|.+|.++++.|...|. .++++|.+.++. ... ..+ .+
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~~~---~g~--~v 284 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------RLP---DDA--DL 284 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------hcc---CCC--cE
Confidence 334457899999999999999999998886 677877652210 000 011 12
Q ss_pred eecccc-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 194 LTTELT-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 194 ~~~~l~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
..++.+ + ..+++.+.||.+.++.+....+-..+|+.++
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 222222 2 2456788888887776666666677888774
No 326
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.12 E-value=3.7 Score=45.16 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=41.2
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+|.+++|+|.|. ||+|.++++.|+..|. ++.++|.+ ..+.+...+.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 467889999985 6899999999999998 47776631 23455556666654444444444
Q ss_pred e
Q 001301 195 T 195 (1104)
Q Consensus 195 ~ 195 (1104)
.
T Consensus 64 ~ 64 (260)
T PRK07063 64 P 64 (260)
T ss_pred E
Confidence 3
No 327
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.09 E-value=2.1 Score=48.64 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=27.1
Q ss_pred EEEEcCCh-hhHHHHHHHHHhCCceEEEEeCCcc
Q 001301 122 ILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVV 154 (1104)
Q Consensus 122 VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V 154 (1104)
|||-|.|| +|+|+++.|+..|.++|.++|.+.-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~ 34 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN 34 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh
Confidence 68888655 9999999999999999999997543
No 328
>PLN02240 UDP-glucose 4-epimerase
Probab=84.09 E-value=6.2 Score=45.52 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.6
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
|++++|+|.|. |.+|..+++.|+..|. +|+++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45689999986 7799999999999996 6888763
No 329
>PLN02780 ketoreductase/ oxidoreductase
Probab=84.04 E-value=3.2 Score=47.90 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=42.9
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++.++|.| .||||.++++.|+..|. ++++++.+ ..|.+.+++.++...+..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 56789998 58999999999999997 78888632 124455566666666655665
Q ss_pred eecccCC
Q 001301 595 ALQIRAN 601 (1104)
Q Consensus 595 ~~~~~v~ 601 (1104)
.+..++.
T Consensus 108 ~~~~Dl~ 114 (320)
T PLN02780 108 TVVVDFS 114 (320)
T ss_pred EEEEECC
Confidence 5544443
No 330
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=83.95 E-value=1.9 Score=49.27 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=48.0
Q ss_pred EEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEEEeeccc
Q 001301 124 ISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISALTTEL 198 (1104)
Q Consensus 124 IiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~~~~~~l 198 (1104)
|||+|.+|+.+|-.|+..|+ ..|.|+|- -+.+++..+.-|+... ..++|.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999997 56999984 1234455555555543 2344442 2
Q ss_pred chhhhcCCceEEEecC
Q 001301 199 TKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467899999998765
No 331
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.90 E-value=5.9 Score=45.34 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+|.|+|+|.+|+.++.+|...|. .++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999997 58888864
No 332
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.86 E-value=2.7 Score=46.09 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=30.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeC
Confidence 36778999998 59999999999999997 7887764
No 333
>PRK07680 late competence protein ComER; Validated
Probab=83.76 E-value=6.3 Score=44.26 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=48.7
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 121 NILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+|.|||+|.+|..++..|...|. ..++++|.+. .++ +.+.+..+.+.+. . .
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~--~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA--K-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE--C-C
Confidence 59999999999999999999984 4577765421 122 2233322333321 1 1
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998654444444443
No 334
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.76 E-value=2.3 Score=48.98 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=48.8
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe-e-c
Q 001301 121 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL-T-T 196 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~-~-~ 196 (1104)
+|.|||+ |.+|+.+|-.|+..|+ ..|.|+|-. ||+.-+--|+.-.+.+++... . +
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999897 689999964 111112224433344566543 1 1
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
++ .+.+++.|+||.|..
T Consensus 61 ~~-y~~~~daDivvitaG 77 (310)
T cd01337 61 EL-KKALKGADVVVIPAG 77 (310)
T ss_pred ch-HHhcCCCCEEEEeCC
Confidence 11 356789999998765
No 335
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=83.72 E-value=4.6 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=34.2
Q ss_pred cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 109 YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 109 ~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
|.......+..++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 126 w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 126 WQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred cCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 54333346888999999999999999999999998 5667775
No 336
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.52 E-value=3.3 Score=47.03 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.8
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+|+|+|+|++|+.+|..|+.+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999995 6888764
No 337
>PRK09186 flagellin modification protein A; Provisional
Probab=83.50 E-value=2.8 Score=45.85 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=27.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+++++|+|.| .|+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 3568899998 58999999999999997 677764
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.48 E-value=0.99 Score=56.86 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=62.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
+.+|+|+|+|-+|..+++.|...|+ +++++|.|.-. + +.+++. +. .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~~-------------------v----~~~~~~--g~--~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPDH-------------------I----ETLRKF--GM--KV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHHH-------------------H----HHHHhc--CC--eE
Confidence 4699999999999999999999998 89999987521 1 122221 22 23
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
+..+.++ .+++...-.+++|+||.|+||.+....+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4443332 22333334568999999999999888887777665
No 339
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.48 E-value=5.2 Score=44.14 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=41.2
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
|+++.++|.|+ +|+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 56788999986 5799999999999998 477776421 24445556666666555555443
No 340
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=83.44 E-value=1.2 Score=50.92 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.6
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|.|||+|.+|+.++.+|+..|. ++++.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999997 77777754
No 341
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.44 E-value=3.7 Score=46.94 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=28.2
Q ss_pred EEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 122 ILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 122 VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
|.|||+|.+|+.+|-.|++.|...++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987699999975
No 342
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.43 E-value=4.3 Score=46.50 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..+|.|+|+|.+|+.+|++|...|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999995 78898864
No 343
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=83.41 E-value=1.1 Score=47.47 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=28.3
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcc
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 556 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~I 556 (1104)
+|.|||+|.+|.-++-.+++.|. +++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChH
Confidence 68999999999999999999998 9999997644
No 344
>PRK08291 ectoine utilization protein EutC; Validated
Probab=83.41 E-value=4.1 Score=47.31 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=53.7
Q ss_pred cCeEEEEcCChhhHHHHHHHHH-hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.++|+|+|+|+.|...+..|.. .|+..+++++.+ ..|++..++++++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 679999998642 337777777776432 24443332 1
Q ss_pred cchhhhcCCceEEEecCC
Q 001301 198 LTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~ 215 (1104)
-++.+.++|+||.|+.+
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 13567789999988754
No 345
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.32 E-value=2.4 Score=46.48 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++++|.| .||||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 4567899998 58999999999999997 6777763
No 346
>PRK05442 malate dehydrogenase; Provisional
Probab=83.32 E-value=1.6 Score=50.48 Aligned_cols=74 Identities=9% Similarity=0.142 Sum_probs=47.9
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCC-c-----eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CC
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NA 188 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGV-g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~ 188 (1104)
.+|.|||+ |.+|+.+|-.|+..|+ + .|.|+|-.. .+.|+++.+.-|+... +.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~-----------------~~~~~~g~a~Dl~~~~~~~~~~ 67 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP-----------------ALKALEGVVMELDDCAFPLLAG 67 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC-----------------cccccceeehhhhhhhhhhcCC
Confidence 58999998 9999999999999887 4 699998521 0112222222333332 33
Q ss_pred cEEEEeecccchhhhcCCceEEEecC
Q 001301 189 VAISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 189 V~V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+. . =+.+-+.+.|+||.+..
T Consensus 68 ~~i~--~--~~y~~~~daDiVVitaG 89 (326)
T PRK05442 68 VVIT--D--DPNVAFKDADVALLVGA 89 (326)
T ss_pred cEEe--c--ChHHHhCCCCEEEEeCC
Confidence 4433 1 12356889999998765
No 347
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.32 E-value=1.4 Score=52.77 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||..+|+.+...|. ++...|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998887 8888874
No 348
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=83.29 E-value=3.2 Score=46.42 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=47.3
Q ss_pred EEEEcC-ChhhHHHHHHHHHhC--C-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEEe
Q 001301 122 ILISGM-QGLGAEIAKNLILAG--V-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISAL 194 (1104)
Q Consensus 122 VlIiG~-gglGseiaKnLvlaG--V-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~~ 194 (1104)
|.|||+ |.+|..++..|+..| . .+|+|+|.+. .|++..+..|+... +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 889999999999998 4 6899998533 12222333343333 23455542
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ ++ .+.+.+.|+||.+..
T Consensus 62 ~-d~-~~~~~~aDiVv~t~~ 79 (263)
T cd00650 62 D-DP-YEAFKDADVVIITAG 79 (263)
T ss_pred C-ch-HHHhCCCCEEEECCC
Confidence 2 11 356789999999653
No 349
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.17 E-value=3 Score=48.81 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=58.1
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
+|+|+|+|.||.-.+..+.+.|. .+|+++|.+.- |.+.|++.. .. .+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~~-------------------Rl~~A~~~~----g~-~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSPE-------------------RLELAKEAG----GA-DVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCHH-------------------HHHHHHHhC----CC-eEeecC
Confidence 89999999999999999999999 89999975431 222222211 10 110000
Q ss_pred ccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
.. ....+.++...--..+|+||+|+.+..+.....+.++..+.-.+
T Consensus 222 ~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 222 SE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 00001111000013699999999988877777777776655444
No 350
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.15 E-value=2.8 Score=46.82 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=28.6
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+|.|||+|.+|+.+++.|...|... ..+++++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECC
Confidence 3568999999999999999999988521 134777664
No 351
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.14 E-value=5.6 Score=40.33 Aligned_cols=59 Identities=25% Similarity=0.421 Sum_probs=41.7
Q ss_pred CeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 120 SNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 120 s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+.|+|.| .+|+|.++++.|+..|-.++.++... .-..+++...+.+.+.+ .++.....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence 3688887 67899999999999999999998764 01235555566666444 566555443
No 352
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=83.12 E-value=0.86 Score=52.54 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
..+.+++|.|+|+|.||..+|+.|-- + |..+.. ++.+ -..++ .+.+ .+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~--F-----g~~i~y-------~~r~---------~~~~~--~~~~----~~~~- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKP--F-----GCVILY-------HSRT---------QLPPE--EAYE----YYAE- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhh--c-----cceeee-------eccc---------CCchh--hHHH----hccc-
Confidence 46788999999999999999999987 4 322222 2111 11111 1111 1111
Q ss_pred EEeeecccCCccccccchhhhhccCCEEE-EccCCHHHHHHHhhccccccc---ceEeccc
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVV-NALDNVNARLYIDQRCLYFQK---PLLESGT 648 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi-~alDn~~aR~~i~~~c~~~~~---pli~~g~ 648 (1104)
. +++ ++++.+.|+|+ +|-.+.+++-.+|+.....-+ -+++.+-
T Consensus 208 -------~-----~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aR 254 (336)
T KOG0069|consen 208 -------F-----VDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTAR 254 (336)
T ss_pred -------c-----cCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccc
Confidence 1 111 46788999665 888999999999985544322 3555443
No 353
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.08 E-value=1.6 Score=49.81 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.3
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|.+||+|.+|+.++++|+..|. ++++.|.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~ 32 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRN 32 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECC
Confidence 79999999999999999999987 78888865
No 354
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.08 E-value=3.3 Score=47.32 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.||.|||+|.+|..++..|+..|+ +.++++|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-----~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-----GDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----eEEEEEEC
Confidence 589999999999999999999998 68999985
No 355
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=83.05 E-value=2.9 Score=50.80 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=67.8
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeec-cc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTT-EL 198 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~-~l 198 (1104)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+... -+-.-+....+..+.+ .|.+-+...+. ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g---~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKG---KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCC---CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999997 7899987554333322110000 0000111122223233 35555544433 11
Q ss_pred ch----h---hhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 199 TK----E---KLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 199 ~~----e---~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
.+ . .+..=++||++.- ......+..+.+.++| +.||.+.+.|
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 11 1 2344478888764 4455555567788888 8899888777
No 356
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.98 E-value=7.4 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
++|.|||+|-+|..+|.+|+.+|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 688998754
No 357
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.95 E-value=6.4 Score=44.40 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=49.8
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
...+|.+||+|..|..++++|...|+ ..|+++|... ..|++ .+.+.. .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHH----HHHHhc-CceEe--
Confidence 34589999999999999999999983 3444433200 01222 222211 23322
Q ss_pred ecccchhhhcCCceEEEecCCHhHhhhHHHHH
Q 001301 195 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYC 226 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c 226 (1104)
. . ..+.+.+.|+||+|..+......+..+.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2245678999999998766666565553
No 358
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=82.91 E-value=3.4 Score=47.89 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEe
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHD 150 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD 150 (1104)
...|++++|.|||+|..|..+|++|..+|+ .+.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 346788999999999999999999999998 555544
No 359
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.90 E-value=6.7 Score=48.64 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=59.5
Q ss_pred hcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC-------CCc
Q 001301 118 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-------NAV 189 (1104)
Q Consensus 118 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN-------p~V 189 (1104)
.+..|+|.|+ |++|..+++.|+..|. +|++++.+. .+++.+.+.+.++. +..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~ 138 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVE 138 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccC
Confidence 3467899986 7899999999999997 566554321 13333333333211 112
Q ss_pred EEEEeecccch-----hhhcCCceEEEecCCH---------------hHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 190 AISALTTELTK-----EKLSDFQAVVFTDISL---------------EKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 190 ~V~~~~~~l~~-----e~l~~~dvVV~~~~~~---------------~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
++.++..++.+ ..+.+.|+||.+.... .....+-++|+..+. -.||..++.|
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSSig 210 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTSLG 210 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEccch
Confidence 34555555532 2467889988775311 112344566666662 2466666554
No 360
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=82.83 E-value=6.7 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+|.|||+|..|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 789998743
No 361
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=82.76 E-value=5.7 Score=44.42 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=47.9
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.+.+|.|||+|-+|+.+++.|...|+ .++.+.|.+.-. .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 44689999999999999999999884 236666542210 00 0111
Q ss_pred ecccchhhhcCCceEEEecCCHhHhhhHHHHH
Q 001301 195 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYC 226 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c 226 (1104)
. -..+.+.++|+||+|..+......+.++.
T Consensus 49 ~--~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 Q--SNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred C--ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 12235678899999987766655555543
No 362
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.76 E-value=4.6 Score=45.56 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=27.5
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+|.|||+|.+|..+++.|...|. .|+++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999996 6888886
No 363
>PLN02253 xanthoxin dehydrogenase
Probab=82.74 E-value=3 Score=46.47 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.7
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++.+++++|.| +|+||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 45678899998 78999999999999997 7888763
No 364
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.74 E-value=3.7 Score=46.55 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=57.8
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec-cc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT-EL 198 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~-~l 198 (1104)
||||+|. |-+|..+++.|...|..-+.+ +... -|+ ...+++.+.+.+..|++-|++-.. .+
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~~--------------~dl--~d~~~~~~~~~~~~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRSD--------------LDL--TDPEAVAKLLEAFKPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STTC--------------S-T--TSHHHHHHHHHHH--SEEEE------H
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cchh--------------cCC--CCHHHHHHHHHHhCCCeEeccceeecH
Confidence 7999996 559999999999988644444 4431 122 234567778888889877766321 11
Q ss_pred c-----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 199 T-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 199 ~-----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
+ ++.. ...+......|.++|.+++ +++|..++..+|
T Consensus 65 ~~ce~~p~~a--------~~iN~~~~~~la~~~~~~~--~~li~~STd~VF 105 (286)
T PF04321_consen 65 DACEKNPEEA--------YAINVDATKNLAEACKERG--ARLIHISTDYVF 105 (286)
T ss_dssp HHHHHSHHHH--------HHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS
T ss_pred HhhhhChhhh--------HHHhhHHHHHHHHHHHHcC--CcEEEeeccEEE
Confidence 0 0000 0012334457789999999 999998877655
No 365
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=82.74 E-value=8 Score=44.78 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=57.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
.+|||.|+ |-+|+.+++.|...|=-+|+.+|...-. +..+.+.-.++.+..++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~--------------------------~~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR--------------------------LGDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH--------------------------HHHhccCCCeEEEeCCC
Confidence 36999997 6699999999997642367777642210 11111111233344443
Q ss_pred c-h-----hhhcCCceEEEecC-----------------CHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 199 T-K-----EKLSDFQAVVFTDI-----------------SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 199 ~-~-----e~l~~~dvVV~~~~-----------------~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
. + +.+++.|+||-+.. +......+-++|++.+ ..||.+++.+.+|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeec
Confidence 2 1 23456677763211 1122345667888888 7899988877665
No 366
>PLN02306 hydroxypyruvate reductase
Probab=82.69 E-value=1.4 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-hcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||+++++.|. .+|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 488999999999999999999985 6676 7888875
No 367
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=82.63 E-value=3.4 Score=49.66 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=74.2
Q ss_pred eEEEEcCChh-hHHHHHHHH----HhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 121 NILISGMQGL-GAEIAKNLI----LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~ggl-GseiaKnLv----laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+|.|||.|+. +-++++.|+ ...++.|+|+|-|.- -+.. =...+.+...+..+.++|+..+
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl~~------------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RLDI------------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 7999999985 346777777 345789999996431 1100 1123444556777788887765
Q ss_pred cccchhhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEe
Q 001301 196 TELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
+ -++-+++.|.||.+.. ..+.+..=.+++.++| ++-..+.|..|..+.
T Consensus 67 D--~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G----~~gqeT~G~GG~~~a 116 (425)
T cd05197 67 D--LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYG----VIGQETVGPGGTFSG 116 (425)
T ss_pred C--HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcC----cccccccCcchhhhh
Confidence 4 3457889999999875 5666666667999999 455788888886553
No 368
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.59 E-value=3.4 Score=47.16 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=31.3
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
..++|+|.|||.||--....+-.+|. .+|+++|.+.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeecCH
Confidence 46799999999999988888888999 8999998543
No 369
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=82.52 E-value=1.1 Score=53.63 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.6
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
..+|+|||+|-+||+.|-.||+.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999998 899999643
No 370
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.42 E-value=3.8 Score=45.55 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|+++.++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 56778999985 7999999999999997 7888764
No 371
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.25 E-value=6.8 Score=44.24 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 121 NILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+|.|||+|.+|..+++.|...|. .++.+++.+. ..++ +.+....+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~----~~l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHF----NQLYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHH----HHHHHHcCCeEEe---CC
Confidence 69999999999999999999983 5677766421 0121 1222222333321 11
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
..+.+.+.|+||+|.-+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998765544444444
No 372
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=82.17 E-value=4.3 Score=44.59 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.6
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 45789998 57999999999999987 78888743
No 373
>PRK06523 short chain dehydrogenase; Provisional
Probab=82.03 E-value=2.7 Score=46.25 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=31.7
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
++++++|+|.| .||||.++++.|+..|. ++++++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCCh
Confidence 46678999999 58999999999999997 788887653
No 374
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=82.01 E-value=1.1 Score=53.59 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 3778999999999999999999999998 78999864
No 375
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=81.86 E-value=6.4 Score=44.02 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=27.0
Q ss_pred CeEEEEcC-ChhhHHHHHHHHH-hCCceEEEEeCCc
Q 001301 120 SNILISGM-QGLGAEIAKNLIL-AGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvl-aGVg~itLvD~d~ 153 (1104)
.+|.|+|+ |.+|..+++.+.. .++.-+.++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 37999999 9999999998875 4676666777653
No 376
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.82 E-value=6.5 Score=43.37 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=28.5
Q ss_pred HhhcCeEEEEcC-C-hhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGM-Q-GLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-g-glGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+.+.+++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 344688999997 5 7999999999999985 777653
No 377
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=81.61 E-value=5.5 Score=46.11 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=54.8
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA 193 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~ 193 (1104)
...++.++|.|+|+|.+|.++|+.|.-.| ..|.-...... +-+...+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc---------
Confidence 35789999999999999999999999977 44444322111 11111112111
Q ss_pred eecccchhhhcCCceEEEec-CCHhHhhhHHH-HHHHcC
Q 001301 194 LTTELTKEKLSDFQAVVFTD-ISLEKAVEFDD-YCHNHQ 230 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~-~~~~~~~~ln~-~c~~~~ 230 (1104)
..+ .++++.+.|+||+|. .+.+++..+|+ +|.+.+
T Consensus 208 -~~d-~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 -FVD-IEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred -ccC-HHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 111 246888999988766 47778888886 333333
No 378
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.61 E-value=6.2 Score=43.94 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCc--eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVK--SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg--~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+|.|||+|.+|..+++.|...|.. .+.+.|. ...|++ .+.+..+.+.+. . +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~----~l~~~~~~~~~~--~-~- 54 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAA----RLAERFPKVRIA--K-D- 54 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHH----HHHHHcCCceEe--C-C-
Confidence 699999999999999999998842 2334331 012332 333333333321 1 1
Q ss_pred chhhhcCCceEEEecCCHhH
Q 001301 199 TKEKLSDFQAVVFTDISLEK 218 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~~~~~ 218 (1104)
..+.+.+.|+|++|..+...
T Consensus 55 ~~~~~~~aDvVilav~p~~~ 74 (258)
T PRK06476 55 NQAVVDRSDVVFLAVRPQIA 74 (258)
T ss_pred HHHHHHhCCEEEEEeCHHHH
Confidence 22456789999999875333
No 379
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.59 E-value=4.7 Score=44.74 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=32.0
Q ss_pred HHHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 113 TMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 113 ~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
++.++.+++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r 41 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR 41 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 455788899999986 78999999999999974 777775
No 380
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.52 E-value=3.6 Score=49.91 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=70.7
Q ss_pred hcCeEEEEcCChhhHH-HHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 118 FASNILISGMQGLGAE-IAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 118 ~~s~VlIiG~gglGse-iaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
..++|+|+|+|+.|.. +|+.|...|. .+++.|.... .. .+.|.+. .+.+. ..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~------------------~~----~~~l~~~--gi~~~--~~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES------------------AV----TQRLLEL--GAIIF--IG 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC------------------hH----HHHHHHC--CCEEe--CC
Confidence 4568999999999999 7999999997 4777775321 00 1235443 34443 22
Q ss_pred ccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001301 197 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
. .++.+.++|+||.+.. +.. ...-..+++++ +|++.-.-. .+.+... .+-..|.=++|....+.++..|
T Consensus 59 ~-~~~~~~~~d~vv~spgi~~~--~~~~~~a~~~~--i~i~~~~e~--~~~~~~~-~~~I~ITGTnGKTTTt~ll~~i 128 (461)
T PRK00421 59 H-DAENIKDADVVVYSSAIPDD--NPELVAARELG--IPVVRRAEM--LAELMRF-RTSIAVAGTHGKTTTTSLLAHV 128 (461)
T ss_pred C-CHHHCCCCCEEEECCCCCCC--CHHHHHHHHCC--CcEEeHHHH--HHHHHcc-CcEEEEECCCCHHHHHHHHHHH
Confidence 2 4456778999998764 222 22345667889 888762211 1111101 1223444456776665555554
No 381
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.48 E-value=4.3 Score=47.47 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=57.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec-c
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT-E 197 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~-~ 197 (1104)
..+|+|+|+|++|.-.+..+-+.|...|.++|.+. .|.+.+++. ...-.+..... .
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~----~g~~~~~~~~~~~ 225 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEA----GGADVVVNPSEDD 225 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHh----CCCeEeecCcccc
Confidence 33899999999999999999999999999998532 133322221 11111111001 0
Q ss_pred cch---hhh--cCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 198 LTK---EKL--SDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 198 l~~---e~l--~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
... +.- .++|+||.|..+........++++..|
T Consensus 226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGG 263 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCC
Confidence 000 111 369999999987777777888888888
No 382
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=81.48 E-value=2.4 Score=48.85 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+|.|||+ |.+|+.+|-.|+..|+ ..+.|+| +-+ ++.-+--|+...+.++|......
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGE- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCC-
Q ss_pred c--hhhhcCCceEEEe
Q 001301 199 T--KEKLSDFQAVVFT 212 (1104)
Q Consensus 199 ~--~e~l~~~dvVV~~ 212 (1104)
+ .+-+++.|+||.|
T Consensus 59 ~~~~~~~~daDivvit 74 (312)
T TIGR01772 59 EGLENALKGADVVVIP 74 (312)
T ss_pred CchHHHcCCCCEEEEe
No 383
>PTZ00117 malate dehydrogenase; Provisional
Probab=81.47 E-value=1.3 Score=51.17 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=31.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++.||.|||+|.+|..++-.|++.|+ ..|+|+|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 56799999999999999999999998 689999853
No 384
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.47 E-value=1.5 Score=50.69 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCce------EEEEeCC
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKS------VTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~------itLvD~d 152 (1104)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988755 9999864
No 385
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=81.42 E-value=6.3 Score=43.33 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=34.3
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..|+..+|+|.|.|.+|..+++.|...|.+-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999999888788864
No 386
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.41 E-value=9.6 Score=43.96 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=27.2
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+|.|+|+|++|+.++..|..+|. .+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999994 67888753
No 387
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.41 E-value=1.9 Score=47.00 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.8
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.|+.++|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998653
No 388
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=81.33 E-value=2.2 Score=49.40 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHH-hcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~iiD 552 (1104)
.|.+++|.|||.|.||.++++.|. -.|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 588999999999999999999986 4555 566555
No 389
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=81.18 E-value=1.3 Score=50.81 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=32.7
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 511 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 511 q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+.|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999999 777765
No 390
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.13 E-value=1.4 Score=44.49 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=25.8
Q ss_pred EEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 519 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 519 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|+|+|+|++|+.++-.|++.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999887 7887763
No 391
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.01 E-value=3 Score=47.57 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 46678899998 58999999999999997 7777764
No 392
>PLN00106 malate dehydrogenase
Probab=81.00 E-value=5.4 Score=46.22 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE-e
Q 001301 118 FASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA-L 194 (1104)
Q Consensus 118 ~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~-~ 194 (1104)
...+|+|+|+ |.+|+.+|-.|+..|+ +.+.|+|-+. ...+.+ -|...++.+.+.. .
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~a~----------------Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGVAA----------------DVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCeeEc----------------hhhhCCcCceEEEEe
Q ss_pred ecccchhhhcCCceEEEe
Q 001301 195 TTELTKEKLSDFQAVVFT 212 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~ 212 (1104)
...--.+.+++.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 393
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=80.96 E-value=3 Score=47.77 Aligned_cols=107 Identities=24% Similarity=0.354 Sum_probs=61.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCccc--------ccCcccccCcccCccccchHHHHHHHHHHhC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAAALIN 588 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie--------~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~n 588 (1104)
++|.|||+|-.|+-+|..+|..|+ .+++.|-..=. ..+|.|+. .-|+.+.+.+...+..+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Confidence 589999999999999999999777 89999865110 01122211 112222222222232222
Q ss_pred CCcEEeeecccCCccccccchhhhhccCCEEEEc-cCCHHHHHHHhhcccccccc--eEecccCCc
Q 001301 589 PHLNTEALQIRANPETENVFNDTFWENLNVVVNA-LDNVNARLYIDQRCLYFQKP--LLESGTLGA 651 (1104)
Q Consensus 589 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a-lDn~~aR~~i~~~c~~~~~p--li~~g~~G~ 651 (1104)
+. ++ ..-++++|+||.| .-|.+.++.+-+..-..-+| ++-|-|.+.
T Consensus 73 ~~-------------~~----~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 73 PT-------------TD----LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred cc-------------Cc----hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
Confidence 21 11 1136789999966 46777777655544444333 665555554
No 394
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=80.95 E-value=7.3 Score=45.63 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=33.4
Q ss_pred HHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEE--EeCCc
Q 001301 112 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTL--HDEGV 153 (1104)
Q Consensus 112 e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itL--vD~d~ 153 (1104)
+.++--.+.+|.|||+||-|+-++.+|+..|+..+.+ +|.|.
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 3444445678999999999999999999999875544 67765
No 395
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.80 E-value=10 Score=43.62 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhC-CceEEEEeCC
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAG-VKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaG-Vg~itLvD~d 152 (1104)
|++++|||.|. |++|+.+++.|+..| ..+|+++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999985 779999999999987 4578888743
No 396
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.80 E-value=6.7 Score=45.32 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh--------CCCcEEE
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL--------NNAVAIS 192 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL--------Np~V~V~ 192 (1104)
+|.|||+|..|+.++.+|+..| ..++++| |-....+.+.+. .......
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~-----------------------r~~~~~~~i~~~~~~~~~~~g~~~~~~ 61 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKG-VPVRLWA-----------------------RRPEFAAALAAERENREYLPGVALPAE 61 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CeEEEEe-----------------------CCHHHHHHHHHhCcccccCCCCcCCCC
Q ss_pred EeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeee
Q 001301 193 ALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
+....-..+.+.++|+||.+.-+......+..+. .+ ..+|.+..
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~--~~--~~vi~~~~ 105 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLP--RA--LGYVSCAK 105 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC--cC--CEEEEEee
No 397
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=80.70 E-value=1.5 Score=47.80 Aligned_cols=38 Identities=37% Similarity=0.420 Sum_probs=33.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.|+.++|+|.|.|.+|..+++.|...|. ..+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCCC
Confidence 4688999999999999999999999998 7888888653
No 398
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=80.65 E-value=12 Score=43.09 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=29.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+|.|||+|-+|+.+|-.|+..|...+.|+|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999996
No 399
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.58 E-value=6.2 Score=42.87 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=29.9
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999996 67999999999999986 8887753
No 400
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.52 E-value=5.5 Score=47.47 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=45.0
Q ss_pred CccCCCCCCCCchhHHHHhhhhhccCHHHHHH-----hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 85 SIMGLGNGNPSDIDEDLHSRQLAVYGRETMRR-----LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 85 ~~~~~~~~~~~~~d~~~Y~RQi~l~G~e~q~k-----L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+.+++.++......+++|-=.-..| ++..+ +..++|+|+|+|.+|.-+|+.+...|. +++++|.+.
T Consensus 158 Pvi~vnds~~K~~fDn~yg~g~s~~--~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 158 PAINVNDAYTKSLFDNRYGTGQSTI--DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred cEEEecchhhchhhhcccccchhHH--HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 3355555544455566664222233 22222 578999999999999999999999999 588888654
No 401
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=80.52 E-value=8 Score=43.77 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=58.9
Q ss_pred eEEEEcCCh-hhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|||.|.+| ||.++++.|- |-..+.-.|...++. .-.+.+.+.+++..|++-|++-.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Di----------------td~~~v~~~i~~~~PDvVIn~AA---- 59 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDI----------------TDPDAVLEVIRETRPDVVINAAA---- 59 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccc----------------cChHHHHHHHHhhCCCEEEECcc----
Confidence 499999887 9999999987 444555555444322 23456788899999998887632
Q ss_pred hhhhcCCceEEEecCCH--------hHhhhHHHHHHHcCCCcceEEeee
Q 001301 200 KEKLSDFQAVVFTDISL--------EKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 200 ~e~l~~~dvVV~~~~~~--------~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
|.-|-.|.... .....+.++|++.| .++|..++
T Consensus 60 ------yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiST 100 (281)
T COG1091 60 ------YTAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIST 100 (281)
T ss_pred ------ccccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeec
Confidence 11122222222 23456667999999 88888664
No 402
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=80.51 E-value=4.6 Score=46.75 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=51.6
Q ss_pred cCcEEEEcCCcchHHHHHHHH-hcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.++++|||+|+.|...++.|+ ..|+ .+++|.+.+ ..|++..++.+.+..+ +++.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~ 183 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARD-------------------SAKAEALALQLSSLLG-IDVT 183 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEE
Confidence 468999999999999999997 4777 788887522 2467777777654322 3443
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCC
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
... +. .+.+.++|+|++|+-.
T Consensus 184 ~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 184 AAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred EeC-----CH-----HHHhccCCEEEEecCC
Confidence 321 11 2345789999999854
No 403
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.45 E-value=3.4 Score=44.84 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=28.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 4578899999 59999999999999997 677664
No 404
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.35 E-value=6.1 Score=47.53 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+++|+|+|+|+.|..+++.|...|. +++..|...-. .. ...|.+ .+.+ ...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~~-----------------~~----~~~l~~---g~~~--~~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRITP-----------------PG----LDKLPE---NVER--HTG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCCc-----------------hh----HHHHhc---CCEE--EeC
Confidence 457789999999999999999999997 78888853210 00 112321 3343 233
Q ss_pred ccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001301 197 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 273 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i 273 (1104)
..+...+..+|+||....-... ...-..+++.| +|++.-. -+.+.++ + .+-..|.=++|....+.++..|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g--~~v~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA-HPSLSAAADAG--IEIVGDI--ELFCREA-Q-APIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CeEEEHH--HHHhhhc-C-CCEEEEeCCCCHHHHHHHHHHH
Confidence 3334556788998887642222 33455678899 8865521 2222222 1 1234455566776665555554
No 405
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=80.33 E-value=3.4 Score=49.75 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=72.1
Q ss_pred eEEEEcCChh-hHHHHHHHHH----hCCceEEEEeCCccCcccCccccccCcCcccchHHHH-HHHHHHHhCCCcEEEEe
Q 001301 121 NILISGMQGL-GAEIAKNLIL----AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALA-SIQKLQELNNAVAISAL 194 (1104)
Q Consensus 121 ~VlIiG~ggl-GseiaKnLvl----aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea-~~~~L~eLNp~V~V~~~ 194 (1104)
||.|||+|+. +-++++.|+. .+++.|+|+|-|. .-|. .+.. +.+...+.++.++|+..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence 7999999985 2366666663 4578999999644 1111 1223 33344566667777776
Q ss_pred ecccchhhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 195 TTELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
.+ -.+-+++.|.||.+.. ..+.+..=.+++.++| + +...+.|..|..+
T Consensus 66 td--r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyG--i--~gqET~G~GG~~~ 115 (437)
T cd05298 66 TD--PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHG--V--VGQETCGPGGFAY 115 (437)
T ss_pred CC--HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcC--c--ceecCccHHHHHH
Confidence 54 3457889999998875 5566766678999999 4 5568888888554
No 406
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=80.30 E-value=3.5 Score=47.96 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.3
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+++.++|+|.|. |=+|+.+++.|...|. +|+.+|.
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 566789999996 5599999999999985 6777775
No 407
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.19 E-value=1.6 Score=49.48 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.4
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 379999999999999999999986 78998853
No 408
>PLN02427 UDP-apiose/xylose synthase
Probab=80.16 E-value=3.3 Score=48.75 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=28.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcc-cccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMG-VSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~G-v~~~~~g~i~iiD~ 553 (1104)
.++.++|+|.| +|-||+.+++.|+..| . +++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEec
Confidence 45667899999 6999999999999985 4 6777774
No 409
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.15 E-value=4.8 Score=44.35 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56789999996 7999999999999987 7888764
No 410
>PRK14982 acyl-ACP reductase; Provisional
Probab=80.11 E-value=1.4 Score=51.23 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHh-cccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~-~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++|+|+|+ |.+|+++++.|+. .|+ .++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcC
Confidence 588899999998 8999999999985 578 78998864
No 411
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=80.11 E-value=5.5 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhcc
Q 001301 517 AKVFVVGSGALGCEFLKNLALMG 539 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~G 539 (1104)
.||+|+|+|++||.++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999998
No 412
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=80.09 E-value=2.3 Score=48.03 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=30.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+|+|+|+||.+..++..|...|+++|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999975
No 413
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=80.09 E-value=0.71 Score=56.59 Aligned_cols=108 Identities=13% Similarity=0.219 Sum_probs=66.6
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhc-----ccccC-CCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHH
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALM-----GVSCG-NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 585 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~-----Gv~~~-~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~ 585 (1104)
.+|.+.+|+++|+|+-|.-+++.|+.. |+.-. -..+|.++|.+-+-... | .+++...|..-|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 568889999999999999999999985 44111 12689999987443221 1 11144455554443
Q ss_pred HhCCCcEEeeecccCCccccccchhhhhcc--CCEEEEcc--CCHHHHHHHhhcccccccceEec
Q 001301 586 LINPHLNTEALQIRANPETENVFNDTFWEN--LNVVVNAL--DNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~al--Dn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
.+. .. .+ .+.++. .|++|.+. .+.=+...|..++.....|+|.+
T Consensus 387 --~~~---------~~----~L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 --HEP---------GA----SL--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred --ccc---------CC----CH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 111 00 11 123444 78888655 35556677777777777888853
No 414
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.97 E-value=7 Score=42.90 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=22.9
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhccc
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGV 540 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv 540 (1104)
+..||.|||+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998873
No 415
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.95 E-value=1.5 Score=50.27 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
..+|+|||+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999987 788887554
No 416
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.94 E-value=6.9 Score=40.50 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=52.7
Q ss_pred EEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeeec
Q 001301 519 VFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 597 (1104)
Q Consensus 519 VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~ 597 (1104)
|+|+|+ |.+|..+++.|...|. +++++= |. ..|.+. .+.++ ...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~---------------R~----~~~~~~--------~~~~~--~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV---------------RS----PSKAED--------SPGVE--IIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE---------------SS----GGGHHH--------CTTEE--EEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe---------------cC----chhccc--------ccccc--cce
Confidence 789997 9999999999999997 666641 11 112222 44444 444
Q ss_pred ccCCccccccchhhhhccCCEEEEccCC----HHHHHHHhhcccccccc
Q 001301 598 IRANPETENVFNDTFWENLNVVVNALDN----VNARLYIDQRCLYFQKP 642 (1104)
Q Consensus 598 ~~v~~~~~~~~~~~f~~~~DvVi~alDn----~~aR~~i~~~c~~~~~p 642 (1104)
..+.+. +.+ ...++++|.||.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 444332 111 2456789999999863 33333555566565654
No 417
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=79.87 E-value=4.8 Score=45.24 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred CcEEEEcCCcchHHHHHHHHhc--ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 517 AKVFVVGSGALGCEFLKNLALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~--Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.||.|||+|.+|..+++.|... ++ .-+.++|.+ ..+++.+++ ...+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~-----elv~v~d~~-------------------~~~a~~~a~-------~~~~~ 50 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA-----ELYAFYDRN-------------------LEKAENLAS-------KTGAK 50 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe-----EEEEEECCC-------------------HHHHHHHHH-------hcCCe
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
.+... ++++.+.|+|+.|+ ...+..-+-..+.+.++.++
T Consensus 51 ~~~~~----------~ell~~~DvVvi~a-~~~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 51 ACLSI----------DELVEDVDLVVECA-SVNAVEEVVPKSLENGKDVI 89 (265)
T ss_pred eECCH----------HHHhcCCCEEEEcC-ChHHHHHHHHHHHHcCCCEE
No 418
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.83 E-value=4.9 Score=44.65 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=29.4
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeC
Confidence 56789999995 8999999999999997 6777763
No 419
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.81 E-value=10 Score=42.72 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=49.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+.+|.+||+|-+|..++++|+..|. ..|.++|.+ ..+++ .+.+.. .+++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~----~l~~~~-g~~~--~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLK----NASDKY-GITI--TT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHH----HHHHhc-CcEE--eC
Confidence 4579999999999999999999985 346665531 11222 333211 1322 11
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHH
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYC 226 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c 226 (1104)
. ..+.+.+.|+||+|..+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2345678999999987755554455443
No 420
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.79 E-value=9.3 Score=44.18 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
...+|+|.|+|++|..++..+...|++++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5679999999999999999999999998888774
No 421
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.73 E-value=5.5 Score=43.11 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=27.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEe-c
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTIT-D 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ii-D 552 (1104)
|.+++++|+| .|+||.++++.|+..|. +++++ +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcC
Confidence 5678999998 59999999999999998 56555 5
No 422
>PRK08655 prephenate dehydrogenase; Provisional
Probab=79.67 E-value=4.3 Score=49.02 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.+|.||| +|++|..+++.|...|. +++++|.+. .++..++ .+.. +. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~~-------------------~~~~~~a---~~~g--v~--~ 48 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF------EVIVTGRDP-------------------KKGKEVA---KELG--VE--Y 48 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC------EEEEEECCh-------------------HHHHHHH---HHcC--Ce--e
Confidence 3799997 89999999999999886 688887432 1111111 1111 11 1
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccc--ccccceEeccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCL--YFQKPLLESGT 648 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~--~~~~pli~~g~ 648 (1104)
..+. .+...++|+||.|+-.......+.+... .-+..+++.++
T Consensus 49 -----~~~~-----~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 49 -----ANDN-----IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred -----ccCH-----HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 1111 1335678999999876656666655443 23445677665
No 423
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.65 E-value=5.2 Score=46.10 Aligned_cols=137 Identities=20% Similarity=0.260 Sum_probs=78.0
Q ss_pred CccCchhhhhcc-hhhHHHHHhhcc------Ccccccc--eeeccCCCCCCCCCCCCCCCCCccCcchhhhhc-----cC
Q 001301 442 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLLQ--FFYFDSVESLPSEPLDPRDLQPLNSRYDAQISV-----FG 507 (1104)
Q Consensus 442 ~el~PvaA~iGG-iaAQEVIKaiTg------Kf~PI~q--~l~fD~~e~lp~~~~~~~~~~~~~~RYdrqi~l-----~G 507 (1104)
+.+..|.+.+++ ++ .+|.++. +.-|-.+ .+.||.-.+.|..-++...+ -.+|. .+
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~l--------T~~RTaa~sala 116 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTEL--------TARRTAAASALA 116 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcch--------hcchhHHHHHHH
Confidence 345566666642 22 3787653 2234333 45588777766432222111 11121 12
Q ss_pred HHHHHHHhcCcEEEEcCCcchHHHHHHHHh-cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHH
Q 001301 508 SKLQKKLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 586 (1104)
Q Consensus 508 ~~~q~kL~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~ 586 (1104)
.+...+...++|+|||+|+.|..+++.+.. .|+ .+|+|.+.+ ..|++..++.+.+
T Consensus 117 ~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~ 172 (314)
T PRK06141 117 ASYLARKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRA 172 (314)
T ss_pred HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHh
Confidence 222333456899999999999999997765 566 788887522 3566777777655
Q ss_pred hCCCcEEeeecccCCccccccchhhhhccCCEEEEccCC
Q 001301 587 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 587 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
.. ..+.+.. + . .+...++|+|++|+..
T Consensus 173 ~g--~~~~~~~-----~---~--~~av~~aDIVi~aT~s 199 (314)
T PRK06141 173 QG--FDAEVVT-----D---L--EAAVRQADIISCATLS 199 (314)
T ss_pred cC--CceEEeC-----C---H--HHHHhcCCEEEEeeCC
Confidence 32 1232211 1 1 2345789999999873
No 424
>PRK12827 short chain dehydrogenase; Provisional
Probab=79.63 E-value=4.4 Score=43.88 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4567899998 79999999999999987 678777
No 425
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.63 E-value=2.7 Score=49.94 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=58.3
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. + ..+. .
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~~~------~---------------------~~g~--~ 283 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLEHR------L---------------------PDDA--D 283 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhhhh------c---------------------cCCC--c
Confidence 35789999999999999999988886 7889987632110 0 0111 1
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQ 640 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~ 640 (1104)
.+..+.. .++.+...-.++++.|+.+++|......+-..++..+
T Consensus 284 vI~GD~t--d~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 284 LIPGDSS--DSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred EEEeCCC--CHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 2233222 2223333446788999999998877777666666554
No 426
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=79.63 E-value=0.8 Score=51.92 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=31.5
Q ss_pred EEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccc
Q 001301 519 VFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 564 (1104)
Q Consensus 519 VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQ 564 (1104)
|+|.| +|.||+|+++.|+..|. .+|+++|.|--...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 67887 78899999999999999 8999999776555444443
No 427
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=79.61 E-value=4.6 Score=42.87 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=61.4
Q ss_pred cEEEEcCCcchHHH-HHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchH-HHHHHHHHHhCCCcEEee
Q 001301 518 KVFVVGSGALGCEF-LKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAAALINPHLNTEA 595 (1104)
Q Consensus 518 ~VlvvG~GgiG~ev-lknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka-~vaa~~l~~~np~~~i~~ 595 (1104)
||.+||+|+.-... +..+... ...-+.++|.++|-|. .|+- .+ ..+.+.+++.++.++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~-~~~l~~~ei~L~Did~------~RL~----------~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLR-TEELSGSEIVLMDIDE------ERLE----------IVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHC-TTTSTEEEEEEE-SCH------HHHH----------HHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhc-CccCCCcEEEEEcCCH------HHHH----------HHHHHHHHHHHhcCCCeEEEE
Confidence 68999999987653 3333322 1112237999998665 1111 12 244555667788888877
Q ss_pred ecccCCccccccchhhhhccCCEEEEcc--CCHHHHHHHhhcccccccceEecccCCccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~al--Dn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
...+ .+-+++.|+||+++ ...++|..=-+.+.++|+.-...-|.|..|
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 6532 34568999999885 444555555556666665543333444433
No 428
>PRK08251 short chain dehydrogenase; Provisional
Probab=79.59 E-value=8.7 Score=41.80 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=42.5
Q ss_pred cCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+++|+|.| .||+|.++++.|+..|. ++.+++.+ ..+.+.+.+.+.+.+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARR-------------------TDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788987 67799999999999996 67777652 12344555666667777777666554
Q ss_pred c
Q 001301 198 L 198 (1104)
Q Consensus 198 l 198 (1104)
+
T Consensus 62 ~ 62 (248)
T PRK08251 62 V 62 (248)
T ss_pred C
Confidence 4
No 429
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.58 E-value=5.9 Score=42.95 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=29.5
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+++++|+|.| .|++|..+++.|+..|. +|++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678899998 57799999999999997 57777653
No 430
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.56 E-value=5.5 Score=43.35 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|++++++|.| .|+||..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 5678999998 58999999999999987 6777763
No 431
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.52 E-value=3.7 Score=51.60 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=62.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- + .+.+++. . ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~----v~~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------A----VNLMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------H----HHHHHhC--C--CeE
Confidence 4689999999999999999999998 8999997752 1 1222221 1 223
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
+..+.++ .+.+...-.+++|.||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4443332 22333344678999999999998888877777664
No 432
>PRK12367 short chain dehydrogenase; Provisional
Probab=79.50 E-value=2.1 Score=47.40 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=34.6
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 509 KLQKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
-.|.++++++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 358899999999998 58999999999999997 78877754
No 433
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.46 E-value=3.2 Score=48.08 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 356789999996 8999999999999997 7887763
No 434
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.42 E-value=2.7 Score=46.21 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=30.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 5578899998 59999999999999998 788887543
No 435
>PRK00811 spermidine synthase; Provisional
Probab=79.37 E-value=4.9 Score=45.64 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=52.0
Q ss_pred hhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHH
Q 001301 97 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 176 (1104)
Q Consensus 97 ~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kae 176 (1104)
.++-.|.+.+.-...-.. -...+||++|+|+ |.-....|-..|+.+|+++|-|.. -++
T Consensus 57 ~de~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~-------------------vv~ 114 (283)
T PRK00811 57 RDEFIYHEMMTHVPLFAH--PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDER-------------------VVE 114 (283)
T ss_pred cchhhHHHHhhhHHHhhC--CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHH-------------------HHH
Confidence 445577766543332221 2357899999975 433333344568999999986442 344
Q ss_pred HHHHHHHHh------CCCcEEEEeecccch---hhhcCCceEEEe
Q 001301 177 ASIQKLQEL------NNAVAISALTTELTK---EKLSDFQAVVFT 212 (1104)
Q Consensus 177 a~~~~L~eL------Np~V~V~~~~~~l~~---e~l~~~dvVV~~ 212 (1104)
.+.+.+.++ +|.+++ +..+... ..-..||+||+-
T Consensus 115 ~a~~~~~~~~~~~~~d~rv~v--~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 115 VCRKYLPEIAGGAYDDPRVEL--VIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred HHHHHhHHhccccccCCceEE--EECchHHHHhhCCCcccEEEEC
Confidence 555566554 344444 3333211 112479999864
No 436
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.35 E-value=5.9 Score=45.16 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=52.3
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
...+|+|+|+|++|...+..+...|+..+.++|.+.- |.+.+. ...-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-------------------rl~~a~-~~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-------------------RRDGAT-GYEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHhhh-hccccChh---------
Confidence 4568999999999999998888899998887764211 111111 01111211
Q ss_pred cchhhhcCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 198 LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
++.-..+|+|++|..........-+.++..|
T Consensus 195 --~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 195 --KDPRRDYRAIYDASGDPSLIDTLVRRLAKGG 225 (308)
T ss_pred --hccCCCCCEEEECCCCHHHHHHHHHhhhcCc
Confidence 0011368999999987665555566777777
No 437
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=79.34 E-value=9.5 Score=42.87 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=25.0
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeC
Q 001301 121 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~ 151 (1104)
+|+|.|. |.+|.++++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899986 7799999999999883 46777763
No 438
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.28 E-value=4.8 Score=45.95 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.3
Q ss_pred EEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 519 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 519 VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
|.|||+|.+|+.++-.|++.|. ++++++|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-----~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-----GDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-----cEEEEEeCC
Confidence 5799999999999999999998 689999976
No 439
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=79.13 E-value=4.4 Score=45.99 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=27.0
Q ss_pred cEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|+|.| +|.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 689998 59999999999999986 78888754
No 440
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.08 E-value=2.2 Score=54.63 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=83.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccC----cccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sN----LnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.+|.|||+|..|+.++..+|+.|. .++++|.+.=.... +.+ .|=+.-.-|+.....+.+.+.+ ++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~-~l~~~~~~g~~~~~~~~~~~~~----i~ 382 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAK-LLNKQVERGKIDGAKMAGVLSS----IR 382 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHH-HHHHHHHcCCCChhhHHHHHhC----eE
Confidence 579999999999999999999998 99999965322111 000 0000001111111111111111 11
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEc-cCCHHHHHHHhhccccccc--ceEecccCCcccc-eEEEeCCcccccCc
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNA-LDNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 668 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~a-lDn~~aR~~i~~~c~~~~~--pli~~g~~G~~G~-v~v~ip~~t~~y~~ 668 (1104)
.+ + + + +-++++|+||.| ..+.+.++.+-......-. .+|-+-|.+.--. ..-.+.+-.-+.+.
T Consensus 383 ~~---------~-~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 383 PT---------L-D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred Ee---------C-C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 11 1 1 1 225789999977 5677777755444333222 3454444432110 00001111111111
Q ss_pred C-CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhH
Q 001301 669 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 711 (1104)
Q Consensus 669 ~-~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~ 711 (1104)
. -.|+. ..|+.-+-.-|...+.++.++.+++. -.+..|-.+
T Consensus 450 Hff~P~~-~~~lVEvv~g~~T~~~~~~~~~~~~~-~lgk~pv~v 491 (715)
T PRK11730 450 HFFNPVH-RMPLVEVIRGEKTSDETIATVVAYAS-KMGKTPIVV 491 (715)
T ss_pred ecCCccc-ccceEEeeCCCCCCHHHHHHHHHHHH-HhCCceEEe
Confidence 1 12322 23444444556777888888888665 346665544
No 441
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.04 E-value=1.7 Score=50.37 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|++++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999998887 88888843
No 442
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.02 E-value=3.8 Score=46.45 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 4567899998 59999999999999997 7887763
No 443
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=79.00 E-value=5.6 Score=45.34 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc-c
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL-T 199 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l-~ 199 (1104)
+|.+||+|-.|..++.+|+..|. .++++|.+.- ... +. +.|...+....+.+ -..++-+.+.+..- .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~-----~~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADE-----LL---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHH-----HH---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7788886431 111 11 12322222222211 13344444443321 1
Q ss_pred hhh-------h---cCCceEEEec-CCHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 KEK-------L---SDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~e~-------l---~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
.+. + ..=.+||++. .+.....++.+.+.++| +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 111 1 1224666654 46777888889999999 8888876555
No 444
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.99 E-value=1.6 Score=49.55 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|+|+|+|++|..+++.|..+|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899999999999999999999997 7888763
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.96 E-value=12 Score=43.19 Aligned_cols=94 Identities=26% Similarity=0.256 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc-----------
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV----------- 189 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V----------- 189 (1104)
+|+|||+|.+|+.+|..|..+| .+++++| |.... +.+++..-.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~-----------------------r~~~~-~~~~~~g~~~~~~~~~~~~~~ 58 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIG-----------------------RARIG-DELRAHGLTLTDYRGRDVRVP 58 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEe-----------------------cHHHH-HHHHhcCceeecCCCcceecc
Q ss_pred --EEEEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 190 --AISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 190 --~V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.+...... +.+..+|+||+|..+......+..+....... ..|...+.|+
T Consensus 59 ~~~~~~~~~~---~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~-~iii~~~nG~ 110 (341)
T PRK08229 59 PSAIAFSTDP---AALATADLVLVTVKSAATADAAAALAGHARPG-AVVVSFQNGV 110 (341)
T ss_pred cceeEeccCh---hhccCCCEEEEEecCcchHHHHHHHHhhCCCC-CEEEEeCCCC
No 446
>PRK07340 ornithine cyclodeaminase; Validated
Probab=78.95 E-value=3.6 Score=47.20 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=52.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHh-cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
....+++|+|+|+.|...++.+.. .|+ .++.|.|.+ ..|++..++.+..... .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~ 176 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARALGP--T 176 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--e
Confidence 356899999999999999999975 576 678887533 4567777777765422 2
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCC
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
+. . . +. .+...++|+||.|+-.
T Consensus 177 ~~-~----~-~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 177 AE-P----L-DG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eE-E----C-CH-----HHHhhcCCEEEEccCC
Confidence 22 1 1 11 2345799999999864
No 447
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.92 E-value=4.2 Score=44.96 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678899998 56899999999999987 78888754
No 448
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.89 E-value=4.4 Score=44.36 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|.+++|+|.| .|+||.++++.|+..|. ++++++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~------~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA------KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 4578999998 58999999999999987 6888764
No 449
>PRK06720 hypothetical protein; Provisional
Probab=78.83 E-value=5 Score=41.90 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 67788999996 5699999999999986 78888754
No 450
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.82 E-value=5.2 Score=46.03 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++++|+|.| +|+||..+++.|+..|-+ .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 3567899998 589999999999998720 378888744
No 451
>PLN02688 pyrroline-5-carboxylate reductase
Probab=78.81 E-value=9.2 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhccc
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGV 540 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv 540 (1104)
.||.+||+|.+|+.++++|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 379999999999999999998874
No 452
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=78.73 E-value=1.7 Score=50.47 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.|.+++|+|||+|-+|..++++|...|+ ++|+|+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEEc
Confidence 4788999999999999999999999999 8899873
No 453
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=78.50 E-value=2.7 Score=46.80 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHh----CC------ceEEEEeCCc
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILA----GV------KSVTLHDEGV 153 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvla----GV------g~itLvD~d~ 153 (1104)
++|++.+|+++|+|..|.-|++.|+.+ |+ ++|.++|.+=
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 358999999999999999999999999 99 8999999763
No 454
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.48 E-value=9 Score=43.92 Aligned_cols=104 Identities=21% Similarity=0.152 Sum_probs=0.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE------
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA------ 193 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~------ 193 (1104)
.+|.|||+|-.|+.+|.+|+..|. +++++| ....+.+.+..++...-+...-..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d-------------------~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~ 62 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWD-------------------ADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEe-------------------CCHHHHHHHHHHHHHHHHHHHHcCCCchhh
Q ss_pred --------eecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 194 --------LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 194 --------~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
....--.+.+.+.|+|+.+.. +.+....+-..+.+...+-.+|.+.+.+.
T Consensus 63 ~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~ 121 (308)
T PRK06129 63 PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121 (308)
T ss_pred HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCC
No 455
>PRK12829 short chain dehydrogenase; Provisional
Probab=78.44 E-value=5 Score=44.05 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.6
Q ss_pred HHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 511 QKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 511 q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
...+++++++|.| .|+||..+++.|+..|. ++++++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~------~V~~~~r 43 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA------RVHVCDV 43 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 3457889999998 69999999999999997 6888873
No 456
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=78.38 E-value=4.9 Score=48.48 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=28.3
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+||+|.| .|-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 35899998 69999999999999987 78888754
No 457
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.29 E-value=8.1 Score=47.52 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=29.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
-++|.|||+|..|..||.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999996 78898864
No 458
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=78.28 E-value=16 Score=35.05 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=25.3
Q ss_pred eEEEEcCChhhHHHHHHHHHh--CCceEEEEeCC
Q 001301 121 NILISGMQGLGAEIAKNLILA--GVKSVTLHDEG 152 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvla--GVg~itLvD~d 152 (1104)
+|.|||+|..|...+..+... ++.-+.++|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 799999999999999998877 44444566653
No 459
>PRK13529 malate dehydrogenase; Provisional
Probab=78.26 E-value=1.1 Score=54.74 Aligned_cols=117 Identities=10% Similarity=0.188 Sum_probs=66.2
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHh----cccccC-CCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHH
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLAL----MGVSCG-NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 586 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~----~Gv~~~-~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~ 586 (1104)
.+|.+.+|+++|+|+-|.-+++.|+. .|+.-. -..+|.++|.+-+=... | .|+...|..-|..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence 56888999999999999999999987 577211 12589999976543221 1 1344445444432
Q ss_pred hCCCcEEeeecccCCccccccchhhhhccC--CEEEEccC--CHHHHHHHhhcccccccceEecc
Q 001301 587 INPHLNTEALQIRANPETENVFNDTFWENL--NVVVNALD--NVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 587 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~--DvVi~alD--n~~aR~~i~~~c~~~~~pli~~g 647 (1104)
.++--..... .....+ .+.++.. |++|.+.- +.=+...|..++.....|+|.+-
T Consensus 359 ~~~~~~~~~~-----~~~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 416 (563)
T PRK13529 359 REELADWDTE-----GDVISL--LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPL 416 (563)
T ss_pred cccccccccc-----cCCCCH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 1211000000 000011 1334444 88886543 45556666677766677888533
No 460
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.26 E-value=3.1 Score=46.51 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=67.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCc---eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVK---SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg---~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
.||.|||||.+|..+++.|..-+.. -..+.|.+.-....+. +..++-...+.|....|++-|++-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCCH
Confidence 5899999999999999998654332 3334444321111110 11122222344555667777776443
Q ss_pred cc----chhhhc-CCceEEEecC---CHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 197 EL----TKEKLS-DFQAVVFTDI---SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 197 ~l----~~e~l~-~~dvVV~~~~---~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
.. -+..|+ +.|+||.... +.+...+|.+.|++.+..+-+-++...|+.+
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~ 129 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY 129 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence 32 223555 7899998754 5567788999999987433333444555544
No 461
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=78.25 E-value=7.3 Score=43.84 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=24.8
Q ss_pred cEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 518 KVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 518 ~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+|+|.| .|.||.++++.|...|- .-+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecC
Confidence 589998 59999999999998872 026777653
No 462
>PRK05875 short chain dehydrogenase; Provisional
Probab=78.10 E-value=9.7 Score=42.28 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=29.9
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 367789999996 7899999999999998 6777764
No 463
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.04 E-value=2.2 Score=48.21 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=29.7
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++++|+|+||.+..++-.|+..|+ .+|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-----TDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 589999999999999999999999 89999863
No 464
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.02 E-value=1.8 Score=51.96 Aligned_cols=35 Identities=40% Similarity=0.616 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+.+|+|+|+|++|..+++.|...|+ .+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeC
Confidence 678999999999999999999999998 78998864
No 465
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=77.95 E-value=5.1 Score=46.85 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=57.4
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceE-EecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~-iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.+|+|+|+ |.+|.++++.|...-. -+++ +++.+. ..|+. +....|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999998 9999999999986522 3555 545431 11211 11122322110
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 648 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~ 648 (1104)
. ...+.+.+ ..++..+.|+||.|+.+-.++.++.... ..++.+||.+.
T Consensus 53 ~-~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~~-~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPID----EEEIAEDADVVFLALPHGVSAELAPELL-AAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHHH-hCCCEEEeCCh
Confidence 0 00111100 0234458999999999998888888653 46788886443
No 466
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.90 E-value=5.7 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=30.9
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+++|+|||+|..|-..|..|++.|. +++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEecC
Confidence 46799999999999999999999998 79999864
No 467
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.86 E-value=2.6 Score=52.09 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||.++++.|...|. +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 4888999999999999999999998887 7888774
No 468
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.81 E-value=5.2 Score=44.02 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.4
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57899985 9999999999998886 7888763
No 469
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.81 E-value=2.5 Score=54.24 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=88.2
Q ss_pred CcEEEEcCCcchHHHHHHHH-hcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCC--CcEE
Q 001301 517 AKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP--HLNT 593 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa-~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np--~~~i 593 (1104)
++|.|||+|-.|+.++-.++ +.|+ .++++|.+. ..+.| ++..+.-..+.+.+... ....
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~---~~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 371 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINP---QGINH---------ALKYSWDLLDKKVKRRHLKPSER 371 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCH---HHHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 58999999999999999999 8898 999998653 11111 11111111111111000 0000
Q ss_pred eeecccCCccccccchhhhhccCCEEEEc-cCCHHHHHHHhhccccccc--ceEecccCCcccc-eEEEeCCcccccCcC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNA-LDNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGAS 669 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a-lDn~~aR~~i~~~c~~~~~--pli~~g~~G~~G~-v~v~ip~~t~~y~~~ 669 (1104)
.....++...+. + +-++++|+||.| ..+.+.++.+-......-. .++-+-|.+.--. ..-.+.+-.-+.+..
T Consensus 372 ~~~~~~i~~~~~--~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~H 447 (708)
T PRK11154 372 DKQMALISGTTD--Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLH 447 (708)
T ss_pred HHHHhcEEEeCC--h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEe
Confidence 000011111111 1 235789999977 4677777765554444323 3555555443211 100111111222222
Q ss_pred CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhH
Q 001301 670 RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 711 (1104)
Q Consensus 670 ~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~ 711 (1104)
--.|....|++-+-.-|......+.++..++.. .+..|-.+
T Consensus 448 ff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~-~gk~pv~v 488 (708)
T PRK11154 448 YFSPVEKMPLVEVIPHAKTSAETIATTVALAKK-QGKTPIVV 488 (708)
T ss_pred cCCccccCceEEEECCCCCCHHHHHHHHHHHHH-cCCceEEE
Confidence 222233456666767788888899998887754 45555433
No 470
>PRK09330 cell division protein FtsZ; Validated
Probab=77.69 E-value=8.7 Score=45.48 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=59.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceE--EEEeCCc--cCcccCccccccCcC-----------cccchHHHHHHHH
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSV--TLHDEGV--VELWDLSSNFIFSED-----------DVGKNRALASIQK 181 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~i--tLvD~d~--V~~sdL~rqf~~~~~-----------diGk~Kaea~~~~ 181 (1104)
....+|.|||+||-|+-++.+|+..|+..+ ..++.|. ...+....-..+.+. ++|+.=|+...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~e~ 90 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREE 90 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999998744 4445544 333333233333321 1122122222222
Q ss_pred HHHhCCCcEEEEeecccchhhhcCCceEEEecC------CHhHhhhHHHHHHHcCCCcceEE
Q 001301 182 LQELNNAVAISALTTELTKEKLSDFQAVVFTDI------SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 182 L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~------~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
++ +.++++|.|+++.. +-... .+.+++++.+ ++.+.
T Consensus 91 I~-----------------~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g--~ltva 132 (384)
T PRK09330 91 IR-----------------EALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELG--ILTVA 132 (384)
T ss_pred HH-----------------HHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcC--CcEEE
Confidence 21 24567888876532 22333 6889999988 65554
No 471
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=77.63 E-value=4.9 Score=46.06 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=28.0
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~------~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW------HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC------EEEEEEC
Confidence 467899998 69999999999999997 7888764
No 472
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=77.62 E-value=5.7 Score=47.45 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=71.5
Q ss_pred hcCeEEEEcCChhhH-HHHHHHH----HhCCceEEEEeCCccCcccCccccccCcCcccchH--HHHHHHHHHHhCCCcE
Q 001301 118 FASNILISGMQGLGA-EIAKNLI----LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR--ALASIQKLQELNNAVA 190 (1104)
Q Consensus 118 ~~s~VlIiG~gglGs-eiaKnLv----laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K--aea~~~~L~eLNp~V~ 190 (1104)
++-+|.|||.|+++. +.+..++ ...+..|.|+|-+. ++.+ +..+...+.+.++.++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~-----------------~r~~~i~~~~~~~v~~~g~~~k 64 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE-----------------ERLKIIAILAKKLVEEAGAPVK 64 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH-----------------HHHHHHHHHHHHHHHhhCCCeE
Confidence 456899999998774 3333333 34567888888522 1222 2355666788888888
Q ss_pred EEEeecccchhhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 191 ISALTTELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 191 V~~~~~~l~~e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
|+...+ -++-|.+.|.|+.+.. .++.+..-.++..++| ++-..+.|..|+.
T Consensus 65 v~~ttd--~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG----~~gqET~G~GGi~ 117 (442)
T COG1486 65 VEATTD--RREALEGADFVITQIRVGGLEAREKDERIPLKHG----LYGQETNGPGGIF 117 (442)
T ss_pred EEEecC--HHHHhcCCCEEEEEEeeCCcccchhhhccchhhC----ccccccccccHHH
Confidence 877654 2457889999998875 5565666666778888 4557788877763
No 473
>PRK06940 short chain dehydrogenase; Provisional
Probab=77.61 E-value=4.7 Score=45.18 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=26.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++.++|.|+||||.++++.|+ .|. +++++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeC
Confidence 467888899999999999996 676 7888874
No 474
>PRK08291 ectoine utilization protein EutC; Validated
Probab=77.58 E-value=6.5 Score=45.62 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHh-cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.++++|+|+|+.|...+..|+. .|+ .+++|++.+ ..|++..++.+++.. .+++.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~ 186 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARD-------------------AAKAEAYAADLRAEL-GIPVT 186 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEE
Confidence 4689999999999999999985 567 788888522 236666666665432 23333
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCC
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
.+.. . .+.+.++|+||+|+-.
T Consensus 187 ~~~d-----~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 187 VARD-----V-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred EeCC-----H-----HHHHccCCEEEEeeCC
Confidence 3211 1 2345789999999854
No 475
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.51 E-value=5.7 Score=43.80 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred HHhcCcEEEEcCC---cchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSG---ALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~G---giG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+|.+++|+|.|++ |||.++++.|+..|. ++++++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~------~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA------DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC------eEEEEe
Confidence 5778999999984 899999999999997 677664
No 476
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.49 E-value=2.8 Score=47.68 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.0
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|..++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8998875
No 477
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.44 E-value=4 Score=46.37 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCCh-hhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQG-LGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~ 151 (1104)
.++.++|+|+|.|+ +|..++..|...|. .+|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 56788999999999 99999999999999 9999874
No 478
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=77.41 E-value=2.1 Score=51.37 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|+|||+|-.|||.|..||+.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 89999864
No 479
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.34 E-value=9.3 Score=47.62 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=29.6
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+.||+|+|+|.+|.++++.|...|. .++++|.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECC
Confidence 5789999999999999999999997 57888864
No 480
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.23 E-value=5.9 Score=46.83 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.+|+||| +|.+|..+++.|...|. .++++|.+..+.-
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~------~V~~~d~~~~~~~------------------------------------ 136 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY------QVRILEQDDWDRA------------------------------------ 136 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC------eEEEeCCCcchhH------------------------------------
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccc-ccccceEeccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCL-YFQKPLLESGT 648 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~-~~~~pli~~g~ 648 (1104)
.+.+.++|+||-|+-...+...+..... ..+..+++.|+
T Consensus 137 --------------~~~~~~aDlVilavP~~~~~~~~~~l~~l~~~~iv~Dv~S 176 (374)
T PRK11199 137 --------------EDILADAGMVIVSVPIHLTEEVIARLPPLPEDCILVDLTS 176 (374)
T ss_pred --------------HHHHhcCCEEEEeCcHHHHHHHHHHHhCCCCCcEEEECCC
No 481
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.20 E-value=2.9 Score=48.52 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=34.5
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.|.+++|||||+|-.|.-++++|...|+++|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47889999999999999999999999999999986543
No 482
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=77.19 E-value=5 Score=51.22 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
|.+++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga------~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA------HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC------EEEEEeC
Confidence 5667899998 58999999999999997 7888863
No 483
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.15 E-value=5.5 Score=45.47 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=56.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+++++|+||| .|.+|..++.+|...|. .+++++..+- + +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~~rT~--------------~--------l----------- 195 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAHSRTR--------------D--------L----------- 195 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEECCCCC--------------C--------H-----------
Confidence 36788999999 99999999999999997 7888752211 0 0
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccC
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 649 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~ 649 (1104)
.+..++.|+||.|+.+.. .+.....+-+.-+|+.|+.
T Consensus 196 ------------------~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 196 ------------------PAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ------------------HHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 133467899999998865 4555556667777787764
No 484
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=77.11 E-value=21 Score=41.37 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.9
Q ss_pred hcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 118 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 118 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
++.+|||.|. |.+|+.+++.|+..|. ++++++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3568999995 6799999999999997 4555443
No 485
>PRK13018 cell division protein FtsZ; Provisional
Probab=77.07 E-value=14 Score=43.64 Aligned_cols=107 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCc--eEEEEeCCc--cCcccCccccccCcC-----------cccchHHHHHHH
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVK--SVTLHDEGV--VELWDLSSNFIFSED-----------DVGKNRALASIQ 180 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg--~itLvD~d~--V~~sdL~rqf~~~~~-----------diGk~Kaea~~~ 180 (1104)
.....+|.|||+||-|+-++.+|+..|+. .+..++.|. ..........++.++ ++|+.-++...+
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d 104 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRD 104 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHH
Q ss_pred HHHHhCCCcEEEEeecccchhhhcCCceEEEecC-----CHhHhhhHHHHHHHcCCCcceEEeeec
Q 001301 181 KLQELNNAVAISALTTELTKEKLSDFQAVVFTDI-----SLEKAVEFDDYCHNHQPPIAFIKSEVR 241 (1104)
Q Consensus 181 ~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~-----~~~~~~~ln~~c~~~~~~ipfI~~~~~ 241 (1104)
.++++ +.++|.|+++.. .--..-.+.+++++.+ ++.+..-+.
T Consensus 105 ~I~~~-----------------le~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~ 151 (378)
T PRK13018 105 EIKEV-----------------LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTK 151 (378)
T ss_pred HHHHH-----------------hcCCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEc
No 486
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=77.02 E-value=6.3 Score=45.68 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=28.5
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+++++|||.|. |.+|+++++.|+..|. +|+++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 35688999996 6699999999999996 57777654
No 487
>PRK12744 short chain dehydrogenase; Provisional
Probab=77.01 E-value=5.7 Score=43.65 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=24.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhccc
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGV 540 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv 540 (1104)
|++++++|.| .|+||.++++.|+..|.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC
Confidence 5668899998 88999999999999987
No 488
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=76.96 E-value=8.1 Score=47.30 Aligned_cols=123 Identities=10% Similarity=0.104 Sum_probs=65.4
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc---hHHHHHHHHHHh-CCCcE
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAAALI-NPHLN 592 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~---Ka~vaa~~l~~~-np~~~ 592 (1104)
.+|.+||+|..|+.+++||+..|. ++++.|.+.=....+... ...-|-. -+...++.+... .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 888887542111111000 0000110 011222333221 24443
Q ss_pred EeeecccCCccccccch--hhhhccCCEEEEccCC-HHHHHHHhhcccccccceEecccCCc
Q 001301 593 TEALQIRANPETENVFN--DTFWENLNVVVNALDN-VNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~--~~f~~~~DvVi~alDn-~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
+..... .+..+.+++ ......=|+|||+.-. ++.-+.+.+.+...++.+++++..|.
T Consensus 77 i~~v~~--~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKA--GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCC--cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 333321 111122221 0123345688877654 34444456677777888888888775
No 489
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=76.95 E-value=2.1 Score=47.67 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=36.0
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCc----------eEEEEeCCc
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVK----------SVTLHDEGV 153 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg----------~itLvD~d~ 153 (1104)
++|.+.+|+++|+|..|.-||+.|+.+|++ +|.++|..=
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 478899999999999999999999999998 999999754
No 490
>PRK05872 short chain dehydrogenase; Provisional
Probab=76.92 E-value=6.8 Score=44.39 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=29.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA------KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678999998 59999999999999997 7888764
No 491
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.90 E-value=3.1 Score=46.22 Aligned_cols=56 Identities=21% Similarity=0.104 Sum_probs=34.7
Q ss_pred CchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 95 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+.++..|.+.|.-++.-... +..+|||||.|+ |.-+-.-+-..++.+|+++|-|.
T Consensus 55 ~e~de~~y~e~l~h~~~~~~~--~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~ 110 (246)
T PF01564_consen 55 SERDEFIYHEMLVHPPLLLHP--NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDP 110 (246)
T ss_dssp ETTTHHHHHHHHHHHHHHHSS--ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-H
T ss_pred EEechHHHHHHHhhhHhhcCC--CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecCh
Confidence 355677898877654433222 688999999765 44344444455699999998654
No 492
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.85 E-value=5.1 Score=43.56 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.2
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
|++++++|.| .|+||+++++.|+..|. +++++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 4578899998 68999999999999987 77777643
No 493
>PLN02572 UDP-sulfoquinovose synthase
Probab=76.84 E-value=5.5 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=27.3
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..+|||.|. |.+|+.+++.|+..|. .++++|.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 357999985 7799999999999996 6888884
No 494
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=76.84 E-value=5.8 Score=45.23 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+|+|+|+|++|...+..+..+|+ ..+.++|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~-----~~v~~~~~ 177 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGG-----SPPAVWET 177 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCC
Confidence 3479999999999999988888898 56777653
No 495
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.69 E-value=5.1 Score=44.29 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
++.+++++|.| .|+||.++++.|+..|. +++++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 46778899998 68999999999999997 677775
No 496
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=76.68 E-value=5.7 Score=44.70 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred cEEEEc-CCcchHHHHHHHHh-cccccCCCcceEEec-CCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 518 KVFVVG-SGALGCEFLKNLAL-MGVSCGNQGKLTITD-DDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 518 ~VlvvG-~GgiG~evlknLa~-~Gv~~~~~g~i~iiD-~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
||.|+| +|.+|..+++.+.. -++ .-+-++| .+.-.. ...+++........+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~-----elvav~d~~~~~~~------------------~~~~~~~~~~~~~gv~~~ 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGL-----QLVAAFERHGSSLQ------------------GTDAGELAGIGKVGVPVT 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccc------------------CCCHHHhcCcCcCCceee
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
.-...+.. ..|+||+++ .+.+-..+-..|.+.++|++ +|+.|+
T Consensus 60 ~d~~~l~~------------~~DvVIdfT-~p~~~~~~~~~al~~g~~vV-igttg~ 102 (266)
T TIGR00036 60 DDLEAVET------------DPDVLIDFT-TPEGVLNHLKFALEHGVRLV-VGTTGF 102 (266)
T ss_pred CCHHHhcC------------CCCEEEECC-ChHHHHHHHHHHHHCCCCEE-EECCCC
No 497
>PRK15076 alpha-galactosidase; Provisional
Probab=76.68 E-value=6.7 Score=47.28 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=64.0
Q ss_pred CeEEEEcCChhhHHHHH--HHH--HhCC-ceEEEEeCCccCcccCccccccCcCcccchH-HHH-HHHHHHHhCCCcEEE
Q 001301 120 SNILISGMQGLGAEIAK--NLI--LAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNR-ALA-SIQKLQELNNAVAIS 192 (1104)
Q Consensus 120 s~VlIiG~gglGseiaK--nLv--laGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~K-aea-~~~~L~eLNp~V~V~ 192 (1104)
.+|.|||+|++|...+- .++ .... ..|+|+|-+.= +.+ +.+ +...+..+.+.++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e-----------------r~~~~~~l~~~~~~~~~~~~~i~ 64 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE-----------------RLEESEIVARKLAESLGASAKIT 64 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH-----------------HHHHHHHHHHHHHHhcCCCeEEE
Confidence 47999999998855544 554 2222 38999995321 111 222 333344555566776
Q ss_pred EeecccchhhhcCCceEEEecCC--HhHhhhHH-HHHHHcCCCcceEEeeecceeEEEEe
Q 001301 193 ALTTELTKEKLSDFQAVVFTDIS--LEKAVEFD-DYCHNHQPPIAFIKSEVRGLFGNIFC 249 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~~--~~~~~~ln-~~c~~~~~~ipfI~~~~~G~~G~vf~ 249 (1104)
...+ + .+-+.+.|+||.+... .+.....+ ++..++| +-=-...+.|..|..+.
T Consensus 65 ~ttD-~-~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G--~~~~r~et~G~GG~~~~ 120 (431)
T PRK15076 65 ATTD-R-REALQGADYVINAIQVGGYEPCTVTDFEIPKKYG--LRQTIGDTLGIGGIMRA 120 (431)
T ss_pred EECC-H-HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcC--CeeecccCcCccchhhh
Confidence 5332 1 3567899999998763 33333233 6888888 32111277777776554
No 498
>PRK14982 acyl-ACP reductase; Provisional
Probab=76.65 E-value=2.9 Score=48.57 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.9
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHH-hCCceEEEEeC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLIL-AGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvl-aGVg~itLvD~ 151 (1104)
.|++++|+|+|+ |.+|+++++.|.. .|++++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 588899999999 6899999999985 58999999875
No 499
>PLN02688 pyrroline-5-carboxylate reductase
Probab=76.55 E-value=14 Score=41.25 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC---ceEEEE-eCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 121 NILISGMQGLGAEIAKNLILAGV---KSVTLH-DEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV---g~itLv-D~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+|.+||+|.+|..++++|..+|. ..|+++ |. ...|++ .+.+. .+.+. .
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~~----~~~~~--g~~~~--~- 53 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARRD----VFQSL--GVKTA--A- 53 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHHH----HHHHc--CCEEe--C-
Confidence 69999999999999999999985 245554 21 111222 23332 23321 1
Q ss_pred ccchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 197 ELTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
. ..+.+.+.|+||.|..+......+.++
T Consensus 54 ~-~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 S-NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred C-hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1 224567899999998655444444444
No 500
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=76.52 E-value=1.8 Score=48.04 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCC-----CcceEEecCCcc
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN-----QGKLTITDDDVI 556 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~-----~g~i~iiD~D~I 556 (1104)
++|.+.||+++|+|+-|.-+++.|...|+..|- ..+|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468889999999999999999999999982110 139999997654
Done!