Query 001301
Match_columns 1104
No_of_seqs 535 out of 3952
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 21:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmm_A Ubiquitin-activating en 100.0 1E-215 4E-220 2018.9 87.5 998 95-1103 3-1015(1015)
2 1y8q_B Anthracycline-, ubiquit 100.0 2E-101 7E-106 930.1 29.1 516 502-1088 3-534 (640)
3 1z7l_A Ubiquitin-activating en 100.0 3.3E-69 1.1E-73 592.0 24.9 268 672-946 9-276 (276)
4 1tt5_A APPBP1, amyloid protein 100.0 7.7E-64 2.6E-68 599.9 15.6 379 96-482 8-525 (531)
5 1y8q_A Ubiquitin-like 1 activa 100.0 9.1E-60 3.1E-64 539.2 26.9 322 94-483 11-338 (346)
6 1tt5_B Ubiquitin-activating en 100.0 7.5E-57 2.6E-61 526.8 22.6 359 497-1064 7-407 (434)
7 2nvu_B Maltose binding protein 100.0 2.5E-53 8.7E-58 537.7 26.9 352 504-1064 398-778 (805)
8 1y8q_A Ubiquitin-like 1 activa 100.0 1.3E-35 4.6E-40 339.4 21.4 165 496-671 16-180 (346)
9 1tt5_A APPBP1, amyloid protein 100.0 1.3E-35 4.4E-40 355.8 9.8 190 496-695 12-201 (531)
10 1tt5_B Ubiquitin-activating en 100.0 7.9E-33 2.7E-37 323.8 24.0 282 100-482 7-322 (434)
11 3h8v_A Ubiquitin-like modifier 100.0 5.2E-34 1.8E-38 317.0 12.6 166 495-669 12-193 (292)
12 1zud_1 Adenylyltransferase THI 100.0 8.3E-33 2.8E-37 303.2 13.2 165 496-669 6-173 (251)
13 1zud_1 Adenylyltransferase THI 100.0 5.4E-32 1.9E-36 296.7 19.2 153 95-249 2-160 (251)
14 2nvu_B Maltose binding protein 100.0 6.7E-31 2.3E-35 332.7 25.2 276 107-482 398-693 (805)
15 1jw9_B Molybdopterin biosynthe 100.0 1.7E-31 5.8E-36 292.5 12.8 164 497-669 10-176 (249)
16 3h5n_A MCCB protein; ubiquitin 100.0 1.5E-30 5.1E-35 298.5 16.4 165 496-669 92-264 (353)
17 1y8q_B Anthracycline-, ubiquit 100.0 7E-30 2.4E-34 308.4 20.9 147 105-253 3-154 (640)
18 3rui_A Ubiquitin-like modifier 100.0 9E-30 3.1E-34 287.2 12.3 160 504-669 22-199 (340)
19 3cmm_A Ubiquitin-activating en 100.0 5.2E-30 1.8E-34 325.1 9.7 184 496-697 7-193 (1015)
20 1jw9_B Molybdopterin biosynthe 100.0 5.1E-28 1.7E-32 264.9 17.9 155 94-250 4-164 (249)
21 3h8v_A Ubiquitin-like modifier 100.0 4.7E-28 1.6E-32 269.2 16.0 148 101-251 15-183 (292)
22 4gsl_A Ubiquitin-like modifier 99.9 2E-28 7E-33 292.2 12.2 160 504-669 314-491 (615)
23 3vh1_A Ubiquitin-like modifier 99.9 3.1E-28 1.1E-32 290.7 13.5 165 497-669 301-492 (598)
24 3h5n_A MCCB protein; ubiquitin 99.9 2.5E-27 8.6E-32 271.7 15.1 152 95-248 88-250 (353)
25 3rui_A Ubiquitin-like modifier 99.9 1.7E-25 5.7E-30 252.5 15.9 154 96-252 11-183 (340)
26 4gsl_A Ubiquitin-like modifier 99.9 1.3E-25 4.3E-30 268.2 10.3 147 103-252 310-475 (615)
27 3vh1_A Ubiquitin-like modifier 99.9 5.9E-25 2E-29 262.6 16.1 155 94-251 295-475 (598)
28 2v31_A Ubiquitin-activating en 99.9 2.7E-25 9.1E-30 210.7 5.6 111 250-361 1-111 (112)
29 1z7l_A Ubiquitin-activating en 98.4 4.5E-07 1.5E-11 99.7 9.9 55 767-830 207-263 (276)
30 1y8x_B Ubiquitin-activating en 97.2 0.00017 5.8E-09 66.7 3.0 62 1013-1074 9-87 (98)
31 3dfz_A SIRC, precorrin-2 dehyd 97.2 0.00051 1.8E-08 73.3 7.1 94 116-238 28-121 (223)
32 3jyo_A Quinate/shikimate dehyd 97.0 0.0012 4E-08 73.2 8.2 79 116-213 124-202 (283)
33 3jyo_A Quinate/shikimate dehyd 96.7 0.0016 5.3E-08 72.2 6.7 79 513-623 124-202 (283)
34 1kyq_A Met8P, siroheme biosynt 96.7 0.0043 1.5E-07 68.2 9.4 118 116-243 10-145 (274)
35 1pjq_A CYSG, siroheme synthase 96.6 0.0087 3E-07 70.7 12.0 100 116-243 9-108 (457)
36 3ic5_A Putative saccharopine d 96.5 0.0036 1.2E-07 58.4 6.8 95 516-646 5-99 (118)
37 3dfz_A SIRC, precorrin-2 dehyd 96.5 0.003 1E-07 67.4 6.6 92 513-644 28-119 (223)
38 3ic5_A Putative saccharopine d 96.4 0.02 6.9E-07 53.2 10.8 89 119-237 5-98 (118)
39 3llv_A Exopolyphosphatase-rela 96.1 0.031 1.1E-06 54.3 10.8 92 117-238 4-101 (141)
40 2g1u_A Hypothetical protein TM 96.0 0.025 8.5E-07 56.2 9.9 103 114-241 14-119 (155)
41 3t4e_A Quinate/shikimate dehyd 95.9 0.017 5.8E-07 64.7 9.0 80 117-213 146-228 (312)
42 3llv_A Exopolyphosphatase-rela 95.9 0.02 6.7E-07 55.7 8.4 93 515-642 5-97 (141)
43 3tnl_A Shikimate dehydrogenase 95.9 0.021 7E-07 64.1 9.5 80 117-213 152-234 (315)
44 2hmt_A YUAA protein; RCK, KTN, 95.8 0.038 1.3E-06 53.2 10.1 88 115-230 2-96 (144)
45 2g1u_A Hypothetical protein TM 95.7 0.019 6.7E-07 57.0 7.9 94 511-638 14-107 (155)
46 2hmt_A YUAA protein; RCK, KTN, 95.5 0.024 8.2E-07 54.6 7.2 36 513-554 3-38 (144)
47 3tum_A Shikimate dehydrogenase 95.5 0.029 9.8E-07 61.5 8.6 73 117-213 123-195 (269)
48 1id1_A Putative potassium chan 95.4 0.021 7.2E-07 56.6 6.7 96 117-238 1-103 (153)
49 3tum_A Shikimate dehydrogenase 95.4 0.031 1E-06 61.3 8.3 73 514-623 123-195 (269)
50 1lss_A TRK system potassium up 95.2 0.024 8.1E-07 54.5 6.2 89 517-639 5-93 (140)
51 3tnl_A Shikimate dehydrogenase 95.2 0.03 1E-06 62.7 7.7 83 514-623 152-234 (315)
52 1lss_A TRK system potassium up 95.0 0.08 2.7E-06 50.7 9.3 84 120-230 5-94 (140)
53 1kyq_A Met8P, siroheme biosynt 95.0 0.02 6.9E-07 62.8 5.5 111 513-644 10-138 (274)
54 3e8x_A Putative NAD-dependent 94.9 0.03 1E-06 59.2 6.5 38 510-553 15-53 (236)
55 3abi_A Putative uncharacterize 94.8 0.045 1.5E-06 62.5 7.9 94 515-647 15-108 (365)
56 3abi_A Putative uncharacterize 94.7 0.021 7.1E-07 65.2 5.0 90 118-238 15-107 (365)
57 3pwz_A Shikimate dehydrogenase 94.7 0.047 1.6E-06 59.9 7.6 73 116-214 117-190 (272)
58 2ph5_A Homospermidine synthase 94.7 0.025 8.4E-07 66.5 5.3 102 516-649 13-116 (480)
59 4ina_A Saccharopine dehydrogen 94.6 0.054 1.8E-06 62.8 8.0 103 517-646 2-106 (405)
60 3t4e_A Quinate/shikimate dehyd 94.6 0.056 1.9E-06 60.5 7.8 84 514-624 146-229 (312)
61 3gvi_A Malate dehydrogenase; N 94.5 0.081 2.8E-06 59.5 8.9 77 116-214 4-84 (324)
62 1pjq_A CYSG, siroheme synthase 94.4 0.055 1.9E-06 63.8 7.5 91 514-643 10-100 (457)
63 3oj0_A Glutr, glutamyl-tRNA re 94.4 0.039 1.3E-06 54.0 5.3 72 117-215 19-90 (144)
64 3o8q_A Shikimate 5-dehydrogena 94.3 0.063 2.2E-06 59.2 7.5 73 117-214 124-196 (281)
65 3pwz_A Shikimate dehydrogenase 94.3 0.052 1.8E-06 59.6 6.7 73 514-624 118-190 (272)
66 4ina_A Saccharopine dehydrogen 94.3 0.13 4.3E-06 59.7 10.2 95 120-237 2-105 (405)
67 1id1_A Putative potassium chan 94.3 0.17 5.7E-06 49.9 9.7 94 515-639 2-95 (153)
68 3c85_A Putative glutathione-re 94.2 0.11 3.8E-06 52.7 8.6 87 117-231 37-131 (183)
69 3l4b_C TRKA K+ channel protien 94.2 0.05 1.7E-06 57.1 6.1 88 517-638 1-88 (218)
70 2egg_A AROE, shikimate 5-dehyd 94.2 0.042 1.5E-06 61.0 5.7 35 117-151 139-173 (297)
71 3fwz_A Inner membrane protein 94.1 0.18 6.2E-06 49.0 9.4 84 119-230 7-96 (140)
72 3oj0_A Glutr, glutamyl-tRNA re 94.0 0.035 1.2E-06 54.4 4.0 38 510-553 15-52 (144)
73 2z2v_A Hypothetical protein PH 93.8 0.053 1.8E-06 62.1 5.6 91 117-238 14-107 (365)
74 3o8q_A Shikimate 5-dehydrogena 93.8 0.074 2.5E-06 58.6 6.6 73 514-624 124-196 (281)
75 3e8x_A Putative NAD-dependent 93.6 0.17 5.8E-06 53.3 9.0 102 113-242 15-133 (236)
76 3l4b_C TRKA K+ channel protien 93.6 0.14 4.8E-06 53.7 8.2 92 121-241 2-100 (218)
77 1hyh_A L-hicdh, L-2-hydroxyiso 93.6 0.4 1.4E-05 53.2 12.3 74 120-216 2-80 (309)
78 2egg_A AROE, shikimate 5-dehyd 93.6 0.052 1.8E-06 60.3 4.9 36 514-554 139-174 (297)
79 3p7m_A Malate dehydrogenase; p 93.5 0.15 5.2E-06 57.2 8.5 76 117-214 3-82 (321)
80 2d4a_B Malate dehydrogenase; a 93.4 0.36 1.2E-05 53.8 11.4 71 121-213 1-75 (308)
81 3rku_A Oxidoreductase YMR226C; 93.4 0.26 8.8E-06 54.1 10.2 91 509-623 26-123 (287)
82 3ruf_A WBGU; rossmann fold, UD 93.3 0.38 1.3E-05 53.6 11.7 110 115-245 21-156 (351)
83 3don_A Shikimate dehydrogenase 93.3 0.098 3.3E-06 57.5 6.5 38 513-555 114-151 (277)
84 3qsg_A NAD-binding phosphogluc 93.2 0.28 9.5E-06 54.6 10.2 35 118-152 23-57 (312)
85 3h2s_A Putative NADH-flavin re 93.2 0.099 3.4E-06 54.4 6.1 94 517-648 1-105 (224)
86 3d0o_A L-LDH 1, L-lactate dehy 93.2 0.25 8.7E-06 55.2 9.8 78 114-214 1-83 (317)
87 3don_A Shikimate dehydrogenase 93.1 0.21 7.2E-06 54.8 8.9 108 116-237 114-231 (277)
88 3t4x_A Oxidoreductase, short c 93.0 0.12 4.3E-06 55.8 6.9 83 514-623 8-93 (267)
89 3dqp_A Oxidoreductase YLBE; al 93.0 0.19 6.3E-06 52.3 7.8 95 517-648 1-106 (219)
90 1hdo_A Biliverdin IX beta redu 92.9 0.3 1E-05 49.7 9.2 97 119-244 3-115 (206)
91 3gpi_A NAD-dependent epimerase 92.8 0.2 7E-06 54.3 8.3 99 515-653 2-114 (286)
92 2raf_A Putative dinucleotide-b 92.8 0.16 5.4E-06 53.2 7.0 37 512-554 15-51 (209)
93 1ldn_A L-lactate dehydrogenase 92.8 0.41 1.4E-05 53.5 10.8 72 119-213 6-82 (316)
94 3dhn_A NAD-dependent epimerase 92.7 0.2 6.9E-06 52.2 7.7 97 517-650 5-114 (227)
95 2z2v_A Hypothetical protein PH 92.7 0.15 5E-06 58.4 7.0 94 515-647 15-108 (365)
96 3vku_A L-LDH, L-lactate dehydr 92.6 0.25 8.4E-06 55.6 8.5 75 117-214 7-85 (326)
97 1oju_A MDH, malate dehydrogena 92.5 0.37 1.3E-05 53.4 9.7 72 121-214 2-78 (294)
98 1npy_A Hypothetical shikimate 92.4 0.2 6.8E-06 54.9 7.4 67 118-214 118-184 (271)
99 3pqe_A L-LDH, L-lactate dehydr 92.3 0.3 1E-05 55.0 8.8 75 119-214 5-82 (326)
100 2b69_A UDP-glucuronate decarbo 92.3 0.39 1.3E-05 53.5 9.9 105 116-245 24-146 (343)
101 3dhn_A NAD-dependent epimerase 92.3 0.52 1.8E-05 48.9 10.3 95 120-244 5-116 (227)
102 2ewd_A Lactate dehydrogenase,; 92.3 0.54 1.9E-05 52.4 10.9 33 120-152 5-37 (317)
103 4g65_A TRK system potassium up 92.2 0.069 2.3E-06 63.0 3.6 93 516-642 3-96 (461)
104 3doj_A AT3G25530, dehydrogenas 92.2 0.21 7E-06 55.6 7.3 33 516-554 21-53 (310)
105 4aj2_A L-lactate dehydrogenase 92.2 0.22 7.4E-06 56.2 7.5 78 115-214 15-96 (331)
106 2hk9_A Shikimate dehydrogenase 92.1 0.29 9.9E-06 53.5 8.2 35 116-151 126-160 (275)
107 2aef_A Calcium-gated potassium 92.0 0.28 9.5E-06 51.9 7.8 92 118-240 8-105 (234)
108 3gpi_A NAD-dependent epimerase 92.0 0.31 1.1E-05 52.7 8.4 95 118-245 2-114 (286)
109 2x0j_A Malate dehydrogenase; o 92.0 0.53 1.8E-05 52.1 10.2 72 121-214 2-78 (294)
110 4ezb_A Uncharacterized conserv 92.0 0.55 1.9E-05 52.4 10.5 84 119-225 24-107 (317)
111 3tl2_A Malate dehydrogenase; c 92.0 0.36 1.2E-05 54.0 8.9 78 117-214 6-87 (315)
112 4e21_A 6-phosphogluconate dehy 92.0 0.26 8.9E-06 56.1 7.9 115 117-242 20-143 (358)
113 3o38_A Short chain dehydrogena 91.8 0.22 7.6E-06 53.5 6.9 63 514-602 20-84 (266)
114 2h78_A Hibadh, 3-hydroxyisobut 91.8 0.47 1.6E-05 52.2 9.6 32 517-554 4-35 (302)
115 4egb_A DTDP-glucose 4,6-dehydr 91.8 0.13 4.5E-06 57.3 5.2 36 514-553 22-58 (346)
116 3slg_A PBGP3 protein; structur 91.7 0.096 3.3E-06 59.2 3.9 38 511-554 19-58 (372)
117 4id9_A Short-chain dehydrogena 91.6 0.31 1E-05 54.3 8.0 39 113-152 13-52 (347)
118 1hdo_A Biliverdin IX beta redu 91.6 0.32 1.1E-05 49.4 7.6 33 516-554 3-36 (206)
119 4id9_A Short-chain dehydrogena 91.6 0.18 6.1E-06 56.2 6.0 39 510-554 13-52 (347)
120 3fbt_A Chorismate mutase and s 91.5 0.16 5.5E-06 55.9 5.4 37 117-153 120-156 (282)
121 4egb_A DTDP-glucose 4,6-dehydr 91.5 0.36 1.2E-05 53.7 8.3 106 117-245 22-154 (346)
122 3lf2_A Short chain oxidoreduct 91.4 0.33 1.1E-05 52.4 7.7 85 514-623 6-95 (265)
123 2raf_A Putative dinucleotide-b 91.4 0.47 1.6E-05 49.5 8.6 37 115-152 15-51 (209)
124 3slg_A PBGP3 protein; structur 91.3 0.26 8.8E-06 55.6 7.0 106 112-246 17-147 (372)
125 3rku_A Oxidoreductase YMR226C; 91.3 0.94 3.2E-05 49.6 11.3 68 113-199 27-97 (287)
126 3gvi_A Malate dehydrogenase; N 91.3 0.32 1.1E-05 54.6 7.6 37 513-554 4-40 (324)
127 1xg5_A ARPG836; short chain de 91.2 0.41 1.4E-05 51.9 8.2 86 513-623 29-119 (279)
128 1gpj_A Glutamyl-tRNA reductase 91.2 0.31 1.1E-05 56.4 7.6 71 117-214 165-236 (404)
129 3onh_A Ubiquitin-activating en 91.2 0.26 8.9E-06 47.2 5.6 45 1018-1065 19-67 (127)
130 2hjr_A Malate dehydrogenase; m 91.2 0.49 1.7E-05 53.2 9.0 74 118-213 13-90 (328)
131 1p9l_A Dihydrodipicolinate red 91.2 0.27 9.3E-06 53.0 6.6 75 518-651 2-79 (245)
132 3ldh_A Lactate dehydrogenase; 91.2 0.53 1.8E-05 52.9 9.2 74 118-213 20-97 (330)
133 2v6b_A L-LDH, L-lactate dehydr 91.1 0.88 3E-05 50.4 11.0 71 121-214 2-76 (304)
134 1ur5_A Malate dehydrogenase; o 91.1 1 3.5E-05 50.1 11.5 73 120-214 3-79 (309)
135 3phh_A Shikimate dehydrogenase 91.0 0.23 7.8E-06 54.3 5.9 33 119-152 118-150 (269)
136 2axq_A Saccharopine dehydrogen 91.0 0.24 8.3E-06 58.4 6.5 99 513-646 20-118 (467)
137 4e12_A Diketoreductase; oxidor 90.9 0.74 2.5E-05 50.3 10.0 32 120-152 5-36 (283)
138 3qsg_A NAD-binding phosphogluc 90.9 0.67 2.3E-05 51.5 9.7 34 516-554 24-57 (312)
139 3ruf_A WBGU; rossmann fold, UD 90.9 0.41 1.4E-05 53.3 8.1 115 511-653 20-156 (351)
140 4ezb_A Uncharacterized conserv 90.8 0.59 2E-05 52.1 9.2 108 506-649 14-123 (317)
141 1y1p_A ARII, aldehyde reductas 90.7 0.68 2.3E-05 51.1 9.6 81 514-623 9-91 (342)
142 3nyw_A Putative oxidoreductase 90.7 0.28 9.6E-06 52.5 6.2 65 513-602 4-70 (250)
143 2pzm_A Putative nucleotide sug 90.6 0.29 1E-05 54.3 6.5 37 512-554 16-53 (330)
144 3l9w_A Glutathione-regulated p 90.6 0.46 1.6E-05 55.2 8.3 85 119-231 4-94 (413)
145 1lld_A L-lactate dehydrogenase 90.6 1.4 4.7E-05 48.8 12.0 74 119-214 7-84 (319)
146 3l9w_A Glutathione-regulated p 90.5 0.19 6.6E-06 58.3 5.0 91 516-641 4-94 (413)
147 3ew7_A LMO0794 protein; Q8Y8U8 90.4 0.55 1.9E-05 48.3 8.0 31 517-553 1-32 (221)
148 3dqp_A Oxidoreductase YLBE; al 90.4 0.83 2.8E-05 47.3 9.4 91 121-242 2-108 (219)
149 3d1l_A Putative NADP oxidoredu 90.4 0.73 2.5E-05 49.6 9.2 81 117-225 8-88 (266)
150 3o26_A Salutaridine reductase; 90.3 0.38 1.3E-05 52.5 6.9 85 513-623 9-99 (311)
151 3qiv_A Short-chain dehydrogena 90.3 0.47 1.6E-05 50.4 7.5 63 513-602 6-69 (253)
152 3qvo_A NMRA family protein; st 90.3 0.83 2.9E-05 48.0 9.4 99 119-245 23-130 (236)
153 3m2p_A UDP-N-acetylglucosamine 90.3 0.38 1.3E-05 52.7 7.0 33 516-554 2-35 (311)
154 1iy8_A Levodione reductase; ox 90.2 0.48 1.6E-05 51.0 7.6 85 514-623 11-100 (267)
155 2ph5_A Homospermidine synthase 90.2 0.89 3E-05 53.4 10.2 93 119-239 13-114 (480)
156 3obb_A Probable 3-hydroxyisobu 90.2 1.3 4.6E-05 48.9 11.4 111 120-243 4-126 (300)
157 1nyt_A Shikimate 5-dehydrogena 90.1 0.55 1.9E-05 51.1 8.0 34 117-151 117-150 (271)
158 3tri_A Pyrroline-5-carboxylate 90.1 0.28 9.7E-06 53.7 5.7 36 516-554 3-38 (280)
159 3hg7_A D-isomer specific 2-hyd 90.1 0.38 1.3E-05 54.0 6.8 37 513-555 137-173 (324)
160 1p77_A Shikimate 5-dehydrogena 90.1 0.54 1.9E-05 51.2 8.0 72 117-214 117-189 (272)
161 1y1p_A ARII, aldehyde reductas 90.1 1.5 5E-05 48.3 11.6 106 117-244 9-136 (342)
162 3tri_A Pyrroline-5-carboxylate 90.1 0.69 2.4E-05 50.6 8.7 81 118-226 2-84 (280)
163 3fwz_A Inner membrane protein 90.0 0.2 6.8E-06 48.7 3.9 87 516-637 7-93 (140)
164 1sb8_A WBPP; epimerase, 4-epim 90.0 0.36 1.2E-05 54.0 6.6 34 514-553 25-59 (352)
165 3fi9_A Malate dehydrogenase; s 90.0 0.51 1.8E-05 53.4 7.8 77 117-214 6-85 (343)
166 3d1l_A Putative NADP oxidoredu 90.0 0.36 1.2E-05 52.0 6.3 93 514-647 8-102 (266)
167 1ez4_A Lactate dehydrogenase; 89.9 1 3.5E-05 50.3 10.1 72 120-214 6-81 (318)
168 3pp8_A Glyoxylate/hydroxypyruv 89.9 0.37 1.3E-05 53.9 6.5 35 514-554 137-171 (315)
169 1t2d_A LDH-P, L-lactate dehydr 89.9 0.96 3.3E-05 50.6 9.9 72 120-213 5-80 (322)
170 3u62_A Shikimate dehydrogenase 89.9 0.39 1.3E-05 52.0 6.4 37 117-154 107-143 (253)
171 3m2p_A UDP-N-acetylglucosamine 89.8 0.89 3E-05 49.8 9.5 94 119-245 2-114 (311)
172 3evt_A Phosphoglycerate dehydr 89.8 0.47 1.6E-05 53.3 7.2 36 513-554 134-169 (324)
173 1lu9_A Methylene tetrahydromet 89.8 0.3 1E-05 53.6 5.5 80 514-624 117-197 (287)
174 1nvt_A Shikimate 5'-dehydrogen 89.6 0.37 1.3E-05 53.0 6.1 75 116-214 125-202 (287)
175 4gbj_A 6-phosphogluconate dehy 89.6 1.1 3.8E-05 49.4 10.1 110 119-243 5-126 (297)
176 2bka_A CC3, TAT-interacting pr 89.6 0.76 2.6E-05 48.2 8.4 38 513-554 15-53 (242)
177 2pzm_A Putative nucleotide sug 89.6 0.97 3.3E-05 50.0 9.7 36 116-152 17-53 (330)
178 3pef_A 6-phosphogluconate dehy 89.5 0.5 1.7E-05 51.6 7.1 32 517-554 2-33 (287)
179 3ius_A Uncharacterized conserv 89.4 0.95 3.3E-05 48.7 9.1 97 516-653 5-108 (286)
180 1sby_A Alcohol dehydrogenase; 89.3 0.6 2E-05 49.7 7.4 84 514-623 3-92 (254)
181 1a5z_A L-lactate dehydrogenase 89.3 0.74 2.5E-05 51.4 8.4 71 121-214 2-76 (319)
182 4g65_A TRK system potassium up 89.2 0.48 1.6E-05 55.8 7.0 95 516-644 235-329 (461)
183 3qvo_A NMRA family protein; st 89.2 0.68 2.3E-05 48.7 7.7 100 515-650 22-127 (236)
184 3ko8_A NAD-dependent epimerase 89.2 0.54 1.8E-05 51.4 7.1 31 517-553 1-32 (312)
185 2gn4_A FLAA1 protein, UDP-GLCN 89.1 1.4 4.9E-05 49.3 10.7 100 117-240 19-142 (344)
186 3rkr_A Short chain oxidoreduct 89.1 0.33 1.1E-05 52.2 5.2 84 513-623 26-114 (262)
187 2hjr_A Malate dehydrogenase; m 89.1 0.82 2.8E-05 51.3 8.6 37 513-554 11-47 (328)
188 1lu9_A Methylene tetrahydromet 89.1 0.73 2.5E-05 50.4 8.0 34 117-151 117-151 (287)
189 3p7m_A Malate dehydrogenase; p 89.0 0.53 1.8E-05 52.8 6.9 35 515-554 4-38 (321)
190 3dtt_A NADP oxidoreductase; st 89.0 1.4 4.8E-05 47.0 10.1 38 114-152 14-51 (245)
191 3c85_A Putative glutathione-re 89.0 0.22 7.5E-06 50.5 3.5 35 514-554 37-72 (183)
192 1ff9_A Saccharopine reductase; 89.0 0.6 2E-05 54.8 7.6 96 514-645 1-97 (450)
193 3r6d_A NAD-dependent epimerase 89.0 0.58 2E-05 48.6 6.8 75 517-624 6-82 (221)
194 3nzo_A UDP-N-acetylglucosamine 89.0 3.1 0.00011 47.7 13.6 106 115-240 31-165 (399)
195 2b69_A UDP-glucuronate decarbo 88.9 0.64 2.2E-05 51.7 7.5 37 511-553 22-59 (343)
196 3ius_A Uncharacterized conserv 88.9 1.6 5.4E-05 47.0 10.5 97 119-245 5-108 (286)
197 3ioy_A Short-chain dehydrogena 88.9 0.53 1.8E-05 52.4 6.8 85 514-623 6-95 (319)
198 3vps_A TUNA, NAD-dependent epi 88.8 0.39 1.3E-05 52.5 5.6 37 513-555 4-41 (321)
199 3nep_X Malate dehydrogenase; h 88.8 1.1 3.6E-05 50.1 9.1 72 121-214 2-78 (314)
200 1sb8_A WBPP; epimerase, 4-epim 88.8 1.6 5.4E-05 48.7 10.7 110 117-245 25-158 (352)
201 3vku_A L-LDH, L-lactate dehydr 88.7 0.75 2.6E-05 51.7 7.9 75 515-624 8-85 (326)
202 2zqz_A L-LDH, L-lactate dehydr 88.7 1.2 4E-05 50.1 9.5 74 118-214 8-85 (326)
203 1p9l_A Dihydrodipicolinate red 88.7 1.1 3.7E-05 48.3 8.9 101 121-247 2-111 (245)
204 3pdu_A 3-hydroxyisobutyrate de 88.7 1.2 4.2E-05 48.5 9.5 32 517-554 2-33 (287)
205 3lk7_A UDP-N-acetylmuramoylala 88.7 0.88 3E-05 53.3 8.8 93 117-237 7-101 (451)
206 3i1j_A Oxidoreductase, short c 88.6 0.69 2.4E-05 48.9 7.2 36 513-554 11-47 (247)
207 2axq_A Saccharopine dehydrogen 88.5 1.1 3.9E-05 52.7 9.6 93 116-237 20-117 (467)
208 2cvz_A Dehydrogenase, 3-hydrox 88.5 1.4 4.7E-05 47.8 9.8 87 517-648 2-91 (289)
209 2x6t_A ADP-L-glycero-D-manno-h 88.5 1.1 3.9E-05 49.9 9.3 38 115-152 42-80 (357)
210 3i6i_A Putative leucoanthocyan 88.5 0.79 2.7E-05 51.1 8.0 101 514-643 8-114 (346)
211 2pv7_A T-protein [includes: ch 88.5 0.87 3E-05 50.2 8.2 32 517-554 22-54 (298)
212 2bll_A Protein YFBG; decarboxy 88.5 0.74 2.5E-05 50.9 7.6 32 517-554 1-34 (345)
213 3sxp_A ADP-L-glycero-D-mannohe 88.4 0.56 1.9E-05 52.6 6.7 35 514-554 8-45 (362)
214 2d5c_A AROE, shikimate 5-dehyd 88.4 1.1 3.9E-05 48.2 8.8 35 116-152 114-148 (263)
215 2xxj_A L-LDH, L-lactate dehydr 88.4 1 3.6E-05 50.0 8.7 72 120-214 1-76 (310)
216 2bka_A CC3, TAT-interacting pr 88.4 2.5 8.5E-05 44.1 11.4 36 117-152 16-53 (242)
217 1xu9_A Corticosteroid 11-beta- 88.3 0.76 2.6E-05 50.0 7.5 34 514-553 26-60 (286)
218 2gf2_A Hibadh, 3-hydroxyisobut 88.3 0.57 1.9E-05 51.2 6.5 31 517-553 1-31 (296)
219 3pqe_A L-LDH, L-lactate dehydr 88.3 0.56 1.9E-05 52.7 6.5 34 516-553 5-38 (326)
220 2x0j_A Malate dehydrogenase; o 88.2 1.2 4.1E-05 49.2 9.0 32 517-552 1-32 (294)
221 3svt_A Short-chain type dehydr 88.2 0.84 2.9E-05 49.5 7.7 86 513-623 8-99 (281)
222 2z1m_A GDP-D-mannose dehydrata 88.1 0.65 2.2E-05 51.3 6.9 33 515-553 2-35 (345)
223 3u62_A Shikimate dehydrogenase 88.1 0.5 1.7E-05 51.1 5.7 35 514-554 107-141 (253)
224 3rft_A Uronate dehydrogenase; 88.1 0.39 1.3E-05 51.7 4.9 34 516-555 3-37 (267)
225 4e21_A 6-phosphogluconate dehy 88.1 0.57 1.9E-05 53.3 6.4 36 513-554 19-54 (358)
226 3r6d_A NAD-dependent epimerase 88.0 1.4 4.6E-05 45.7 8.9 98 120-244 6-112 (221)
227 3i6i_A Putative leucoanthocyan 88.0 1.1 3.7E-05 50.0 8.6 93 117-230 8-110 (346)
228 3vps_A TUNA, NAD-dependent epi 88.0 0.98 3.4E-05 49.3 8.2 37 116-153 4-41 (321)
229 2rir_A Dipicolinate synthase, 87.9 0.9 3.1E-05 50.1 7.9 35 116-151 154-188 (300)
230 3sju_A Keto reductase; short-c 87.9 0.63 2.2E-05 50.6 6.5 84 513-623 21-109 (279)
231 3kkj_A Amine oxidase, flavin-c 87.9 0.31 1.1E-05 50.1 3.8 33 516-554 2-34 (336)
232 1pjc_A Protein (L-alanine dehy 87.8 0.86 2.9E-05 51.8 7.8 35 116-151 164-198 (361)
233 3gt0_A Pyrroline-5-carboxylate 87.8 0.71 2.4E-05 49.3 6.7 82 517-636 3-84 (247)
234 3tjr_A Short chain dehydrogena 87.8 0.81 2.8E-05 50.4 7.3 83 514-623 29-116 (301)
235 4fn4_A Short chain dehydrogena 87.7 0.71 2.4E-05 50.0 6.6 83 513-622 4-91 (254)
236 1ks9_A KPA reductase;, 2-dehyd 87.7 2.1 7E-05 46.2 10.5 32 121-153 2-33 (291)
237 3h7a_A Short chain dehydrogena 87.7 0.75 2.6E-05 49.2 6.8 62 514-602 5-67 (252)
238 2q1s_A Putative nucleotide sug 87.6 2 6.7E-05 48.5 10.7 103 117-246 30-157 (377)
239 3ucx_A Short chain dehydrogena 87.6 0.77 2.6E-05 49.4 6.9 84 513-623 8-96 (264)
240 3lyl_A 3-oxoacyl-(acyl-carrier 87.5 0.56 1.9E-05 49.6 5.7 34 514-553 3-37 (247)
241 2x4g_A Nucleoside-diphosphate- 87.5 0.83 2.8E-05 50.5 7.3 32 517-554 14-46 (342)
242 2rcy_A Pyrroline carboxylate r 87.4 1.1 3.7E-05 48.0 7.9 34 119-152 4-40 (262)
243 3gaf_A 7-alpha-hydroxysteroid 87.4 0.56 1.9E-05 50.3 5.6 83 514-623 10-97 (256)
244 3r1i_A Short-chain type dehydr 87.4 0.75 2.6E-05 50.0 6.7 35 513-553 29-64 (276)
245 3tox_A Short chain dehydrogena 87.3 0.64 2.2E-05 50.7 6.1 36 513-554 5-41 (280)
246 1vl6_A Malate oxidoreductase; 87.3 0.45 1.5E-05 54.4 4.9 37 116-152 189-225 (388)
247 2x4g_A Nucleoside-diphosphate- 87.3 1.9 6.5E-05 47.5 10.1 96 121-245 15-131 (342)
248 3sc4_A Short chain dehydrogena 87.3 1.2 4.1E-05 48.5 8.3 90 514-623 7-101 (285)
249 4huj_A Uncharacterized protein 87.3 1.3 4.6E-05 46.3 8.4 31 517-553 24-55 (220)
250 3sxp_A ADP-L-glycero-D-mannohe 87.3 2.1 7E-05 48.0 10.5 112 117-245 8-143 (362)
251 3uve_A Carveol dehydrogenase ( 87.2 0.94 3.2E-05 49.2 7.4 36 513-554 8-44 (286)
252 4ibo_A Gluconate dehydrogenase 87.2 0.75 2.6E-05 49.8 6.5 63 513-602 23-86 (271)
253 2cvz_A Dehydrogenase, 3-hydrox 87.2 1.5 5E-05 47.6 8.9 66 120-217 2-67 (289)
254 3rwb_A TPLDH, pyridoxal 4-dehy 87.1 0.8 2.7E-05 48.8 6.6 35 513-553 3-38 (247)
255 1pzg_A LDH, lactate dehydrogen 87.1 1.8 6.1E-05 48.6 9.7 73 120-213 10-86 (331)
256 2pv7_A T-protein [includes: ch 87.1 1.3 4.3E-05 48.9 8.4 32 120-152 22-54 (298)
257 2z1m_A GDP-D-mannose dehydrata 87.1 1 3.4E-05 49.8 7.6 35 117-152 1-36 (345)
258 2vhw_A Alanine dehydrogenase; 87.0 0.99 3.4E-05 51.6 7.7 35 116-151 165-199 (377)
259 1x7d_A Ornithine cyclodeaminas 87.0 1.4 4.8E-05 49.9 8.9 77 117-215 127-204 (350)
260 1oju_A MDH, malate dehydrogena 87.0 1.3 4.6E-05 48.8 8.5 34 517-554 1-34 (294)
261 1guz_A Malate dehydrogenase; o 87.0 2 6.9E-05 47.6 10.0 72 121-214 2-78 (310)
262 3ego_A Probable 2-dehydropanto 87.0 0.92 3.1E-05 50.3 7.2 31 119-151 2-32 (307)
263 4da9_A Short-chain dehydrogena 87.0 0.49 1.7E-05 51.6 4.9 85 513-623 26-115 (280)
264 2z1n_A Dehydrogenase; reductas 87.0 1.1 3.6E-05 48.0 7.5 34 514-553 5-39 (260)
265 4imr_A 3-oxoacyl-(acyl-carrier 87.0 0.92 3.1E-05 49.3 7.1 39 509-553 26-65 (275)
266 3pk0_A Short-chain dehydrogena 86.9 0.73 2.5E-05 49.6 6.2 84 514-623 8-96 (262)
267 2d4a_B Malate dehydrogenase; a 86.9 1.5 5.1E-05 48.8 8.9 32 518-554 1-32 (308)
268 3tfo_A Putative 3-oxoacyl-(acy 86.9 0.84 2.9E-05 49.4 6.7 82 515-623 3-89 (264)
269 4gx0_A TRKA domain protein; me 86.8 0.84 2.9E-05 54.9 7.3 87 517-642 349-435 (565)
270 3ggo_A Prephenate dehydrogenas 86.8 3.2 0.00011 46.1 11.5 33 119-151 33-66 (314)
271 1jay_A Coenzyme F420H2:NADP+ o 86.8 2 6.9E-05 44.2 9.3 30 121-151 2-32 (212)
272 2eez_A Alanine dehydrogenase; 86.8 0.98 3.4E-05 51.4 7.5 35 116-151 163-197 (369)
273 3e48_A Putative nucleoside-dip 86.7 2.4 8.4E-05 45.6 10.4 94 121-242 2-108 (289)
274 4dqv_A Probable peptide synthe 86.7 1.3 4.3E-05 52.2 8.6 124 515-651 72-217 (478)
275 1y6j_A L-lactate dehydrogenase 86.7 0.8 2.7E-05 51.2 6.5 73 119-214 7-83 (318)
276 1lnq_A MTHK channels, potassiu 86.7 0.97 3.3E-05 50.5 7.3 83 119-231 115-203 (336)
277 2dpo_A L-gulonate 3-dehydrogen 86.6 2.1 7.2E-05 47.8 9.9 35 117-152 4-38 (319)
278 3nzo_A UDP-N-acetylglucosamine 86.5 1.7 5.7E-05 49.9 9.3 89 509-624 28-121 (399)
279 3nyw_A Putative oxidoreductase 86.4 1.5 5.3E-05 46.6 8.4 60 116-195 4-65 (250)
280 1ldn_A L-lactate dehydrogenase 86.4 1.6 5.6E-05 48.6 8.8 34 517-554 7-40 (316)
281 2f1k_A Prephenate dehydrogenas 86.4 2.6 8.9E-05 45.5 10.3 30 121-151 2-31 (279)
282 2a9f_A Putative malic enzyme ( 86.4 0.55 1.9E-05 53.8 4.9 38 116-153 185-222 (398)
283 4e6p_A Probable sorbitol dehyd 86.4 1 3.5E-05 48.2 7.0 36 513-554 5-41 (259)
284 1vkn_A N-acetyl-gamma-glutamyl 86.4 1.3 4.5E-05 50.1 8.1 93 517-647 14-107 (351)
285 3ew7_A LMO0794 protein; Q8Y8U8 86.3 1 3.5E-05 46.3 6.7 92 121-242 2-105 (221)
286 3doj_A AT3G25530, dehydrogenas 86.3 1.1 3.9E-05 49.5 7.5 37 116-153 18-54 (310)
287 2ae2_A Protein (tropinone redu 86.2 1.3 4.5E-05 47.3 7.8 34 514-553 7-41 (260)
288 1bg6_A N-(1-D-carboxylethyl)-L 86.2 2.2 7.6E-05 47.6 10.0 101 117-242 2-112 (359)
289 1np3_A Ketol-acid reductoisome 86.2 1.5 5.2E-05 49.3 8.5 36 115-151 12-47 (338)
290 3ksu_A 3-oxoacyl-acyl carrier 86.2 0.87 3E-05 49.0 6.3 86 514-623 9-99 (262)
291 3qlj_A Short chain dehydrogena 86.2 0.79 2.7E-05 50.9 6.1 74 512-602 23-97 (322)
292 2ew2_A 2-dehydropantoate 2-red 86.2 2.4 8.1E-05 46.3 10.0 96 121-243 5-111 (316)
293 1gee_A Glucose 1-dehydrogenase 86.2 0.96 3.3E-05 48.1 6.6 35 513-553 4-39 (261)
294 2zat_A Dehydrogenase/reductase 86.1 0.99 3.4E-05 48.2 6.7 35 513-553 11-46 (260)
295 1t2d_A LDH-P, L-lactate dehydr 86.1 1.6 5.3E-05 48.9 8.5 33 517-554 5-37 (322)
296 4fgs_A Probable dehydrogenase 86.1 0.7 2.4E-05 50.6 5.5 39 509-553 22-61 (273)
297 3o38_A Short chain dehydrogena 86.0 1.6 5.6E-05 46.6 8.4 34 117-151 20-55 (266)
298 3sx2_A Putative 3-ketoacyl-(ac 86.0 1.8 6.1E-05 46.7 8.8 96 513-623 10-110 (278)
299 3eag_A UDP-N-acetylmuramate:L- 86.0 2.8 9.5E-05 46.8 10.5 87 120-237 5-95 (326)
300 3v8b_A Putative dehydrogenase, 86.0 1.1 3.7E-05 48.9 7.0 35 513-553 25-60 (283)
301 3hn2_A 2-dehydropantoate 2-red 86.0 0.51 1.7E-05 52.4 4.4 32 120-152 3-34 (312)
302 1fmc_A 7 alpha-hydroxysteroid 86.0 0.85 2.9E-05 48.2 6.0 33 514-552 9-42 (255)
303 1oaa_A Sepiapterin reductase; 85.9 0.85 2.9E-05 48.7 6.0 64 514-602 4-71 (259)
304 2h78_A Hibadh, 3-hydroxyisobut 85.9 1.4 4.8E-05 48.3 7.9 32 120-152 4-35 (302)
305 3tsc_A Putative oxidoreductase 85.8 1.2 4E-05 48.2 7.2 97 513-623 8-109 (277)
306 1zcj_A Peroxisomal bifunctiona 85.8 4.5 0.00016 47.4 12.7 32 120-152 38-69 (463)
307 2q1s_A Putative nucleotide sug 85.8 1.2 4.1E-05 50.3 7.5 37 513-554 29-66 (377)
308 3afn_B Carbonyl reductase; alp 85.7 1.3 4.3E-05 46.9 7.3 34 514-553 5-39 (258)
309 3t4x_A Oxidoreductase, short c 85.7 1.9 6.6E-05 46.3 8.8 64 116-199 7-71 (267)
310 3fbt_A Chorismate mutase and s 85.7 0.48 1.6E-05 52.1 4.0 34 514-552 120-153 (282)
311 3pef_A 6-phosphogluconate dehy 85.7 1.4 4.8E-05 48.1 7.7 33 120-153 2-34 (287)
312 2c5a_A GDP-mannose-3', 5'-epim 85.7 2.4 8.3E-05 47.9 10.0 32 120-152 30-62 (379)
313 3h2s_A Putative NADH-flavin re 85.7 2 6.9E-05 44.2 8.6 92 121-242 2-107 (224)
314 1ez4_A Lactate dehydrogenase; 85.7 1.8 6.1E-05 48.3 8.7 73 517-624 6-81 (318)
315 3gt0_A Pyrroline-5-carboxylate 85.6 1 3.5E-05 48.0 6.4 32 120-151 3-37 (247)
316 3ko8_A NAD-dependent epimerase 85.6 2.2 7.5E-05 46.4 9.3 32 120-152 1-33 (312)
317 4egf_A L-xylulose reductase; s 85.5 1.1 3.6E-05 48.4 6.6 85 513-623 17-106 (266)
318 4iin_A 3-ketoacyl-acyl carrier 85.5 0.73 2.5E-05 49.7 5.3 35 513-553 26-61 (271)
319 3pgx_A Carveol dehydrogenase; 85.4 1.3 4.5E-05 47.9 7.3 97 513-623 12-113 (280)
320 2jah_A Clavulanic acid dehydro 85.4 1.4 4.9E-05 46.7 7.5 34 514-553 5-39 (247)
321 3phh_A Shikimate dehydrogenase 85.3 0.65 2.2E-05 50.7 4.7 31 516-552 118-148 (269)
322 1rkx_A CDP-glucose-4,6-dehydra 85.3 3.7 0.00013 45.6 11.3 37 115-152 5-42 (357)
323 3v2h_A D-beta-hydroxybutyrate 85.3 1.4 4.7E-05 48.0 7.4 36 512-553 21-57 (281)
324 2ywl_A Thioredoxin reductase r 85.2 0.53 1.8E-05 47.2 3.8 32 518-555 3-34 (180)
325 3lf2_A Short chain oxidoreduct 85.2 2.6 8.8E-05 45.2 9.5 62 117-198 6-68 (265)
326 4fc7_A Peroxisomal 2,4-dienoyl 85.2 1.2 4.1E-05 48.3 6.9 35 513-553 24-59 (277)
327 2zyd_A 6-phosphogluconate dehy 85.2 1.6 5.3E-05 51.7 8.3 36 512-553 11-46 (480)
328 4gwg_A 6-phosphogluconate dehy 85.1 1.3 4.4E-05 52.4 7.5 118 119-242 4-131 (484)
329 4gx0_A TRKA domain protein; me 85.1 3.5 0.00012 49.5 11.5 85 120-231 349-434 (565)
330 1xg5_A ARPG836; short chain de 85.1 2.6 9E-05 45.4 9.5 63 116-198 29-92 (279)
331 3awd_A GOX2181, putative polyo 85.1 1.4 4.7E-05 46.8 7.2 34 514-553 11-45 (260)
332 3enk_A UDP-glucose 4-epimerase 85.1 2.4 8.2E-05 46.8 9.4 104 119-245 5-134 (341)
333 1o6z_A MDH, malate dehydrogena 85.0 2.5 8.6E-05 46.7 9.5 73 121-214 2-79 (303)
334 1x7d_A Ornithine cyclodeaminas 85.0 0.89 3E-05 51.6 5.8 76 515-625 128-204 (350)
335 3d0o_A L-LDH 1, L-lactate dehy 85.0 1.7 5.9E-05 48.4 8.1 37 514-554 4-40 (317)
336 2rcy_A Pyrroline carboxylate r 85.0 1.5 5.2E-05 46.8 7.5 37 516-554 4-40 (262)
337 3grp_A 3-oxoacyl-(acyl carrier 85.0 0.59 2E-05 50.6 4.2 36 512-553 23-59 (266)
338 2dc1_A L-aspartate dehydrogena 84.9 1.4 4.8E-05 46.7 7.1 76 518-645 2-79 (236)
339 4iiu_A 3-oxoacyl-[acyl-carrier 84.9 0.87 3E-05 48.9 5.5 30 511-540 21-51 (267)
340 2i99_A MU-crystallin homolog; 84.9 0.95 3.3E-05 50.3 6.0 73 116-214 132-205 (312)
341 3ftp_A 3-oxoacyl-[acyl-carrier 84.9 0.98 3.3E-05 48.9 5.9 35 513-553 25-60 (270)
342 3c24_A Putative oxidoreductase 84.9 2.4 8.1E-05 46.1 9.1 75 120-225 12-87 (286)
343 3l77_A Short-chain alcohol deh 84.8 1.5 5.1E-05 45.9 7.2 32 516-553 2-34 (235)
344 2zyd_A 6-phosphogluconate dehy 84.8 2.1 7.1E-05 50.6 9.1 37 114-151 10-46 (480)
345 1eq2_A ADP-L-glycero-D-mannohe 84.8 1.8 6.1E-05 47.0 8.1 32 121-152 1-33 (310)
346 1rkx_A CDP-glucose-4,6-dehydra 84.8 0.93 3.2E-05 50.6 5.9 37 512-554 5-42 (357)
347 2g5c_A Prephenate dehydrogenas 84.7 5 0.00017 43.3 11.6 80 120-226 2-83 (281)
348 3tzq_B Short-chain type dehydr 84.7 1.2 3.9E-05 48.2 6.4 36 513-554 8-44 (271)
349 3r3s_A Oxidoreductase; structu 84.7 0.92 3.2E-05 49.7 5.7 35 513-553 46-81 (294)
350 3st7_A Capsular polysaccharide 84.7 1 3.5E-05 50.7 6.2 33 517-554 1-34 (369)
351 1vl0_A DTDP-4-dehydrorhamnose 84.6 2.7 9.3E-05 45.2 9.4 36 116-152 9-45 (292)
352 3v2g_A 3-oxoacyl-[acyl-carrier 84.5 1.1 3.9E-05 48.4 6.3 33 514-552 29-62 (271)
353 4hb9_A Similarities with proba 84.5 0.56 1.9E-05 53.0 4.0 33 516-554 1-33 (412)
354 3ijr_A Oxidoreductase, short c 84.5 1 3.5E-05 49.3 6.0 36 513-554 44-80 (291)
355 3enk_A UDP-glucose 4-epimerase 84.5 1.1 3.9E-05 49.4 6.4 32 516-553 5-37 (341)
356 4f6c_A AUSA reductase domain p 84.4 1.1 3.9E-05 51.5 6.6 112 516-654 69-202 (427)
357 2hun_A 336AA long hypothetical 84.4 2.7 9.1E-05 46.2 9.4 35 118-152 2-38 (336)
358 2c5a_A GDP-mannose-3', 5'-epim 84.4 1.2 4.2E-05 50.4 6.7 33 516-554 29-62 (379)
359 3hhp_A Malate dehydrogenase; M 84.4 2.5 8.4E-05 47.1 9.0 74 121-214 2-78 (312)
360 3l6d_A Putative oxidoreductase 84.4 1 3.4E-05 49.9 5.8 34 118-152 8-41 (306)
361 1yb1_A 17-beta-hydroxysteroid 84.3 1.2 4E-05 48.1 6.2 34 514-553 29-63 (272)
362 3ehe_A UDP-glucose 4-epimerase 84.3 1.7 5.7E-05 47.5 7.6 23 517-539 2-25 (313)
363 2ydy_A Methionine adenosyltran 84.2 0.97 3.3E-05 49.4 5.6 95 515-653 1-115 (315)
364 3i83_A 2-dehydropantoate 2-red 84.2 1.4 4.7E-05 49.0 7.0 32 120-152 3-34 (320)
365 3dtt_A NADP oxidoreductase; st 84.1 0.63 2.2E-05 49.7 3.9 38 511-554 14-51 (245)
366 1yxm_A Pecra, peroxisomal tran 84.1 1.4 4.9E-05 48.0 6.9 35 513-553 15-50 (303)
367 2hun_A 336AA long hypothetical 84.1 1.1 3.8E-05 49.4 6.0 36 515-554 2-38 (336)
368 3sc6_A DTDP-4-dehydrorhamnose 84.0 2.7 9.1E-05 45.2 9.0 104 121-245 7-111 (287)
369 3pdu_A 3-hydroxyisobutyrate de 84.0 1.6 5.4E-05 47.6 7.2 33 120-153 2-34 (287)
370 2rhc_B Actinorhodin polyketide 84.0 1.8 6E-05 46.9 7.5 34 514-553 20-54 (277)
371 2q1w_A Putative nucleotide sug 84.0 1.5 5E-05 48.7 7.0 36 513-554 18-54 (333)
372 2hq1_A Glucose/ribitol dehydro 84.0 1.7 5.6E-05 45.8 7.1 33 514-552 3-36 (247)
373 2qq5_A DHRS1, dehydrogenase/re 84.0 0.95 3.3E-05 48.4 5.3 83 514-623 3-91 (260)
374 3ngx_A Bifunctional protein fo 84.0 1 3.6E-05 49.1 5.5 33 514-552 148-181 (276)
375 2dc1_A L-aspartate dehydrogena 84.0 3.6 0.00012 43.4 9.8 32 121-152 2-33 (236)
376 1omo_A Alanine dehydrogenase; 84.0 2.7 9.2E-05 46.9 9.2 73 118-215 124-197 (322)
377 1a4i_A Methylenetetrahydrofola 84.0 1.2 4.1E-05 49.3 6.0 33 514-552 163-196 (301)
378 3rih_A Short chain dehydrogena 83.9 1 3.5E-05 49.4 5.7 36 513-554 38-74 (293)
379 3ehe_A UDP-glucose 4-epimerase 83.9 2.6 8.9E-05 46.0 8.9 28 120-148 2-30 (313)
380 2gn4_A FLAA1 protein, UDP-GLCN 83.9 1.3 4.5E-05 49.6 6.7 80 514-624 19-100 (344)
381 1i36_A Conserved hypothetical 83.9 3 0.0001 44.6 9.2 29 121-150 2-30 (264)
382 2zqz_A L-LDH, L-lactate dehydr 83.9 2.1 7.1E-05 48.0 8.2 34 516-553 9-42 (326)
383 2bgk_A Rhizome secoisolaricire 83.9 1.8 6.3E-05 46.3 7.6 34 514-553 14-48 (278)
384 2q1w_A Putative nucleotide sug 83.9 3.1 0.0001 46.0 9.6 36 116-152 18-54 (333)
385 1iy8_A Levodione reductase; ox 83.9 3.5 0.00012 44.1 9.8 63 116-198 10-73 (267)
386 3rft_A Uronate dehydrogenase; 83.8 1.6 5.4E-05 46.9 7.0 34 119-153 3-37 (267)
387 1ur5_A Malate dehydrogenase; o 83.8 2.8 9.6E-05 46.5 9.2 33 517-554 3-35 (309)
388 3rkr_A Short chain oxidoreduct 83.8 2.2 7.6E-05 45.6 8.2 54 114-187 24-78 (262)
389 3hn2_A 2-dehydropantoate 2-red 83.7 0.71 2.4E-05 51.2 4.3 33 516-554 2-34 (312)
390 3nep_X Malate dehydrogenase; h 83.7 2.8 9.6E-05 46.7 9.1 34 517-554 1-34 (314)
391 3tl2_A Malate dehydrogenase; c 83.7 2.1 7.2E-05 47.8 8.1 35 515-554 7-41 (315)
392 1vl6_A Malate oxidoreductase; 83.7 0.51 1.7E-05 54.0 3.1 37 513-554 189-225 (388)
393 3qha_A Putative oxidoreductase 83.6 1 3.5E-05 49.6 5.4 34 119-153 15-48 (296)
394 3gvc_A Oxidoreductase, probabl 83.6 1.1 3.7E-05 48.7 5.6 35 513-553 26-61 (277)
395 2xxj_A L-LDH, L-lactate dehydr 83.6 1.8 6E-05 48.2 7.4 73 517-624 1-76 (310)
396 1wma_A Carbonyl reductase [NAD 83.6 1 3.5E-05 47.9 5.4 34 515-554 3-38 (276)
397 4fs3_A Enoyl-[acyl-carrier-pro 83.5 1.7 5.9E-05 46.5 7.2 35 513-553 3-40 (256)
398 3qiv_A Short-chain dehydrogena 83.5 3.6 0.00012 43.5 9.6 61 116-198 6-67 (253)
399 3edm_A Short chain dehydrogena 83.5 1.1 3.8E-05 48.0 5.6 34 513-552 5-39 (259)
400 4a26_A Putative C-1-tetrahydro 83.5 1.2 4.1E-05 49.3 5.8 35 513-553 162-197 (300)
401 3imf_A Short chain dehydrogena 83.4 1 3.5E-05 48.1 5.3 35 513-553 3-38 (257)
402 4dry_A 3-oxoacyl-[acyl-carrier 83.4 1.4 4.8E-05 47.9 6.4 36 512-553 29-65 (281)
403 3n74_A 3-ketoacyl-(acyl-carrie 83.4 1.7 5.7E-05 46.3 6.9 36 513-554 6-42 (261)
404 4dyv_A Short-chain dehydrogena 83.3 1.4 4.9E-05 47.6 6.5 37 512-554 24-61 (272)
405 3osu_A 3-oxoacyl-[acyl-carrier 83.3 1.3 4.6E-05 46.9 6.1 62 515-602 3-65 (246)
406 4dll_A 2-hydroxy-3-oxopropiona 83.2 1 3.5E-05 50.1 5.4 36 116-152 28-63 (320)
407 1orr_A CDP-tyvelose-2-epimeras 83.2 1.6 5.6E-05 48.1 7.0 31 517-553 2-33 (347)
408 1hye_A L-lactate/malate dehydr 83.1 3.1 0.00011 46.2 9.2 76 121-214 2-83 (313)
409 1orr_A CDP-tyvelose-2-epimeras 83.1 3.3 0.00011 45.6 9.5 31 120-151 2-33 (347)
410 3u9l_A 3-oxoacyl-[acyl-carrier 83.1 1.8 6.2E-05 48.2 7.3 89 514-624 3-96 (324)
411 1b0a_A Protein (fold bifunctio 83.1 1.1 3.7E-05 49.3 5.2 34 513-552 156-190 (288)
412 2dvm_A Malic enzyme, 439AA lon 83.1 0.8 2.7E-05 53.4 4.5 35 116-150 183-219 (439)
413 3kkj_A Amine oxidase, flavin-c 83.0 0.89 3E-05 46.6 4.4 32 120-152 3-34 (336)
414 3hg7_A D-isomer specific 2-hyd 83.0 2.1 7.3E-05 47.9 7.8 51 102-153 121-173 (324)
415 3i83_A 2-dehydropantoate 2-red 83.0 0.72 2.5E-05 51.3 4.0 34 516-555 2-35 (320)
416 4g81_D Putative hexonate dehyd 83.0 0.93 3.2E-05 49.1 4.7 82 514-622 7-93 (255)
417 4dqv_A Probable peptide synthe 82.9 3.4 0.00012 48.5 9.9 108 117-245 71-219 (478)
418 2gdz_A NAD+-dependent 15-hydro 82.9 1.3 4.6E-05 47.4 5.9 34 514-553 5-39 (267)
419 3e48_A Putative nucleoside-dip 82.8 2.3 7.9E-05 45.8 7.9 96 517-648 1-106 (289)
420 2aef_A Calcium-gated potassium 82.8 0.95 3.2E-05 47.7 4.6 90 515-641 8-97 (234)
421 2i6t_A Ubiquitin-conjugating e 82.8 3.7 0.00013 45.5 9.6 33 120-152 15-48 (303)
422 4dmm_A 3-oxoacyl-[acyl-carrier 82.8 1.6 5.4E-05 47.1 6.5 35 513-553 25-60 (269)
423 1r6d_A TDP-glucose-4,6-dehydra 82.8 4.9 0.00017 44.2 10.7 102 121-245 2-132 (337)
424 2jl1_A Triphenylmethane reduct 82.8 0.72 2.5E-05 49.7 3.8 97 517-649 1-108 (287)
425 1s6y_A 6-phospho-beta-glucosid 82.8 3.7 0.00013 48.0 10.0 93 119-230 7-110 (450)
426 1sby_A Alcohol dehydrogenase; 82.7 3.2 0.00011 43.9 8.9 35 117-151 3-38 (254)
427 2hk9_A Shikimate dehydrogenase 82.7 0.77 2.6E-05 50.1 3.9 36 513-554 126-161 (275)
428 3ai3_A NADPH-sorbose reductase 82.7 1.8 6E-05 46.3 6.8 34 514-553 5-39 (263)
429 3gvx_A Glycerate dehydrogenase 82.6 0.58 2E-05 51.7 2.9 51 102-153 103-155 (290)
430 1zem_A Xylitol dehydrogenase; 82.6 2 6.7E-05 46.0 7.1 35 513-553 4-39 (262)
431 1gpj_A Glutamyl-tRNA reductase 82.5 0.67 2.3E-05 53.5 3.6 35 514-553 165-199 (404)
432 1o0s_A NAD-ME, NAD-dependent m 82.5 0.53 1.8E-05 56.1 2.7 78 512-594 316-404 (605)
433 1spx_A Short-chain reductase f 82.4 1.5 5.3E-05 47.1 6.2 34 514-553 4-38 (278)
434 3p2o_A Bifunctional protein fo 82.4 1.5 5E-05 48.2 5.9 34 513-552 157-191 (285)
435 2hrz_A AGR_C_4963P, nucleoside 82.4 1.7 5.9E-05 48.0 6.8 41 514-554 12-54 (342)
436 2o23_A HADH2 protein; HSD17B10 82.3 1.8 6.1E-05 46.0 6.7 35 514-554 10-45 (265)
437 2nwq_A Probable short-chain de 82.3 1.6 5.5E-05 47.3 6.3 35 512-553 18-53 (272)
438 2iz1_A 6-phosphogluconate dehy 82.3 3.5 0.00012 48.5 9.7 32 119-151 5-36 (474)
439 1dih_A Dihydrodipicolinate red 82.3 1.8 6E-05 47.3 6.6 100 515-651 4-106 (273)
440 2pnf_A 3-oxoacyl-[acyl-carrier 82.3 1.5 5E-05 46.1 5.9 34 514-553 5-39 (248)
441 1npy_A Hypothetical shikimate 82.3 0.96 3.3E-05 49.4 4.5 33 515-552 118-150 (271)
442 1ja9_A 4HNR, 1,3,6,8-tetrahydr 82.2 1.3 4.3E-05 47.4 5.4 34 514-553 19-53 (274)
443 3i1j_A Oxidoreductase, short c 82.2 3.5 0.00012 43.3 8.9 35 116-151 11-46 (247)
444 3ldh_A Lactate dehydrogenase; 82.2 2.6 8.9E-05 47.3 8.1 34 516-553 21-54 (330)
445 3obb_A Probable 3-hydroxyisobu 82.1 2.3 7.7E-05 47.1 7.5 30 517-552 4-33 (300)
446 3jtm_A Formate dehydrogenase, 82.1 1.5 5.3E-05 49.6 6.2 84 514-622 162-255 (351)
447 3cxt_A Dehydrogenase with diff 82.0 1.7 5.9E-05 47.5 6.5 34 514-553 32-66 (291)
448 1xq1_A Putative tropinone redu 82.0 1.3 4.4E-05 47.3 5.4 34 514-553 12-46 (266)
449 1n2s_A DTDP-4-, DTDP-glucose o 81.9 1.1 3.8E-05 48.5 4.9 30 518-554 2-32 (299)
450 2iz1_A 6-phosphogluconate dehy 81.9 3.8 0.00013 48.2 9.8 32 516-553 5-36 (474)
451 1txg_A Glycerol-3-phosphate de 81.8 4.5 0.00015 44.7 10.0 94 121-239 2-104 (335)
452 3qy9_A DHPR, dihydrodipicolina 81.8 3.1 0.00011 44.6 8.2 82 517-651 4-86 (243)
453 3svt_A Short-chain type dehydr 81.7 4.2 0.00014 43.9 9.4 35 116-151 8-43 (281)
454 2a9f_A Putative malic enzyme ( 81.7 0.68 2.3E-05 53.1 3.1 38 513-555 185-222 (398)
455 3g17_A Similar to 2-dehydropan 81.7 0.77 2.6E-05 50.4 3.5 33 516-554 2-34 (294)
456 1ek6_A UDP-galactose 4-epimera 81.7 1.5 5.2E-05 48.6 6.0 32 516-553 2-34 (348)
457 4e12_A Diketoreductase; oxidor 81.6 0.87 3E-05 49.7 3.9 32 517-554 5-36 (283)
458 3mog_A Probable 3-hydroxybutyr 81.6 6 0.0002 46.7 11.3 104 117-243 3-123 (483)
459 3hdj_A Probable ornithine cycl 81.6 2.1 7.3E-05 47.6 7.1 73 118-215 120-193 (313)
460 3k6j_A Protein F01G10.3, confi 81.5 7.5 0.00026 45.6 12.0 33 120-153 55-87 (460)
461 1nyt_A Shikimate 5-dehydrogena 81.5 0.81 2.8E-05 49.8 3.5 34 514-553 117-150 (271)
462 3ioy_A Short-chain dehydrogena 81.5 3.2 0.00011 46.0 8.5 63 116-198 5-68 (319)
463 2x9g_A PTR1, pteridine reducta 81.5 1.9 6.6E-05 46.8 6.6 35 513-553 20-55 (288)
464 1guz_A Malate dehydrogenase; o 81.5 3.9 0.00013 45.3 9.2 34 517-554 1-34 (310)
465 3ghy_A Ketopantoate reductase 81.5 0.82 2.8E-05 51.2 3.7 32 516-553 3-34 (335)
466 3kb6_A D-lactate dehydrogenase 81.4 0.43 1.5E-05 53.8 1.3 35 513-553 138-172 (334)
467 1u8x_X Maltose-6'-phosphate gl 81.4 4.9 0.00017 47.3 10.4 92 118-230 27-129 (472)
468 1z82_A Glycerol-3-phosphate de 81.4 2.1 7.2E-05 47.8 7.0 89 121-239 16-111 (335)
469 4ej6_A Putative zinc-binding d 81.4 1.7 5.8E-05 49.3 6.3 34 118-151 182-215 (370)
470 2gas_A Isoflavone reductase; N 81.3 8.2 0.00028 41.6 11.7 92 120-230 3-103 (307)
471 1zk4_A R-specific alcohol dehy 81.3 1.8 6.3E-05 45.5 6.2 34 514-553 4-38 (251)
472 1ek6_A UDP-galactose 4-epimera 81.3 4.7 0.00016 44.5 9.9 32 119-151 2-34 (348)
473 1qyc_A Phenylcoumaran benzylic 81.2 3.5 0.00012 44.7 8.6 92 119-230 4-104 (308)
474 1lld_A L-lactate dehydrogenase 81.2 0.96 3.3E-05 50.1 4.1 35 516-554 7-41 (319)
475 1sny_A Sniffer CG10964-PA; alp 81.2 1.8 6.3E-05 46.1 6.2 37 512-554 17-57 (267)
476 2b4q_A Rhamnolipids biosynthes 81.1 1.9 6.4E-05 46.7 6.3 34 514-553 27-61 (276)
477 1vl8_A Gluconate 5-dehydrogena 81.1 2.5 8.6E-05 45.5 7.3 35 513-553 18-53 (267)
478 4aj2_A L-lactate dehydrogenase 81.1 2 7E-05 48.2 6.7 37 513-553 16-52 (331)
479 3oid_A Enoyl-[acyl-carrier-pro 81.1 1.5 5.1E-05 47.0 5.5 31 515-551 3-34 (258)
480 1qyd_A Pinoresinol-lariciresin 81.1 4.5 0.00015 43.9 9.5 97 516-640 4-107 (313)
481 3is3_A 17BETA-hydroxysteroid d 81.1 1.3 4.4E-05 47.8 5.0 35 513-553 15-50 (270)
482 1g0o_A Trihydroxynaphthalene r 81.1 1.4 4.9E-05 47.7 5.4 34 514-553 27-61 (283)
483 1np3_A Ketol-acid reductoisome 81.0 1.2 4.1E-05 50.1 4.9 92 512-646 12-106 (338)
484 3d4o_A Dipicolinate synthase s 81.0 0.85 2.9E-05 50.2 3.5 35 514-554 153-187 (293)
485 2jl1_A Triphenylmethane reduct 80.9 1.9 6.6E-05 46.2 6.3 95 120-243 1-110 (287)
486 1n2s_A DTDP-4-, DTDP-glucose o 80.8 1.1 3.8E-05 48.5 4.3 107 121-245 2-109 (299)
487 1f0y_A HCDH, L-3-hydroxyacyl-C 80.8 0.97 3.3E-05 49.7 4.0 32 517-554 16-47 (302)
488 1xkq_A Short-chain reductase f 80.8 1.8 6.1E-05 46.8 6.0 34 514-553 4-38 (280)
489 4b1b_A TRXR, thioredoxin reduc 80.8 0.89 3E-05 54.6 3.9 32 518-555 225-256 (542)
490 3k96_A Glycerol-3-phosphate de 80.7 4 0.00014 46.3 9.1 95 118-238 28-132 (356)
491 3u5t_A 3-oxoacyl-[acyl-carrier 80.7 1.8 6.3E-05 46.6 6.1 33 514-552 25-58 (267)
492 3hwr_A 2-dehydropantoate 2-red 80.7 3.3 0.00011 45.9 8.3 105 118-243 18-123 (318)
493 1ae1_A Tropinone reductase-I; 80.7 2.6 8.9E-05 45.4 7.3 34 514-553 19-53 (273)
494 3rc1_A Sugar 3-ketoreductase; 80.6 3.8 0.00013 46.0 8.9 35 117-151 25-61 (350)
495 1omo_A Alanine dehydrogenase; 80.6 2.7 9.1E-05 47.0 7.5 73 515-625 124-197 (322)
496 3gg2_A Sugar dehydrogenase, UD 80.6 5 0.00017 46.9 10.1 98 121-240 4-123 (450)
497 3f9i_A 3-oxoacyl-[acyl-carrier 80.6 1.5 5.2E-05 46.3 5.3 35 513-553 11-46 (249)
498 2rir_A Dipicolinate synthase, 80.5 0.89 3E-05 50.2 3.5 35 514-554 155-189 (300)
499 1ks9_A KPA reductase;, 2-dehyd 80.4 1 3.5E-05 48.7 3.9 33 517-555 1-33 (291)
500 3ctm_A Carbonyl reductase; alc 80.4 1.7 5.8E-05 46.8 5.7 34 514-553 32-66 (279)
No 1
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-215 Score=2018.92 Aligned_cols=998 Identities=45% Similarity=0.806 Sum_probs=938.6
Q ss_pred CchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchH
Q 001301 95 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR 174 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K 174 (1104)
.+++++|||||+++||.++|++|++++|||+|+||+|+++||||+++|||+|||+|+|.|+.+||+||||++++|||++|
T Consensus 3 ~~id~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~K 82 (1015)
T 3cmm_A 3 GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKR 82 (1015)
T ss_dssp CCCCHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBH
T ss_pred hhhhhHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCC
Q 001301 175 ALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 253 (1104)
Q Consensus 175 aea~~~~L~eLNp~V~V~~~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 253 (1104)
|++++++|+++||+|+|+++...++++++++||+||+|.+ +.+.+..||++|++++ +|||++++.|++|++|+|+|+
T Consensus 83 a~a~~~~L~~lNP~v~v~~~~~~l~~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~v~~d~~~ 160 (1015)
T 3cmm_A 83 GDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSG--IRFISSETRGLFGNTFVDLGD 160 (1015)
T ss_dssp HHHHHHHHTTSCTTSCEEECCCCCCSTTGGGCSEEEECTTSCHHHHHHHHHHHHHHT--CEEEEEEEETTEEEEEEECCS
T ss_pred HHHHHHHHHHHCCCCeEEEecCCCCHHHHhcCCEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEecCCC
Confidence 9999999999999999999999999899999999999999 9999999999999999 999999999999999999999
Q ss_pred ceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccc
Q 001301 254 EFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNY 333 (1104)
Q Consensus 254 ~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f 333 (1104)
+|.|++++|+.|.++.+.+| +.|++++|+++.+|++++||.+.|++++||+++|+++++++++.+||+|.| +||+.|
T Consensus 161 ~~~c~~~~~~~p~~~~i~~i--~~p~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I-~Dts~~ 237 (1015)
T 3cmm_A 161 EFTVLDPTGEEPRTGMVSDI--EPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRI-GSVKEY 237 (1015)
T ss_dssp CEEESBSSCCCCCEEEEEEE--CTTCEEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETTEEEC-SCCTTT
T ss_pred ceEEeeCCCCCCccccccCC--CCCceeEeeecccccCCCCCeEEEEeeccchhhcCccceeeEEcCCceeEe-cccchh
Confidence 99999999999999999999 567899999999999999999999999999999999999999999999999 689999
Q ss_pred cccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Q 001301 334 SAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQEL-GRFPVAGSEEDAQKIISL 412 (1104)
Q Consensus 334 ~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~-gr~P~~~~~~Da~~l~~i 412 (1104)
..|.+||+++|+|+|++++|++|++++++| .++.+|+.|++++..+|++||||++|.++| ||+|++++++|+++|.++
T Consensus 238 ~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p-~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~~ 316 (1015)
T 3cmm_A 238 GEYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKL 316 (1015)
T ss_dssp CCCCBCCEEEECCCCEEECCCCHHHHHHSC-CBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred hhhhcCceeEEecCCcccCHHHHHHHHcCh-HHHHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999 577889999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhcCCc--cccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCCC---CCC
Q 001301 413 FTNINDNLADE--RVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPS---EPL 487 (1104)
Q Consensus 413 a~~i~~~~~~~--~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp~---~~~ 487 (1104)
+++++.+.+.. ...+++++++++|+++++++|||||||+||+|||||||+|||||+||+||||||+++++|. .++
T Consensus 317 a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~~~~~~~~ 396 (1015)
T 3cmm_A 317 VTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPR 396 (1015)
T ss_dssp HHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGGGSCCTTTSCC
T ss_pred HHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhccCCCcccceEEecchhhccccccCCC
Confidence 99998764321 0036889999999999999999999999999999999999999999999999999999994 567
Q ss_pred CCCCCCCccCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCc
Q 001301 488 DPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 567 (1104)
Q Consensus 488 ~~~~~~~~~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf 567 (1104)
+++++.|.++||+||+++||.++|++|++++|+|||||||||++|++||++||+||++|+|+|+|+|+|+.|||||||||
T Consensus 397 ~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf 476 (1015)
T 3cmm_A 397 NEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLF 476 (1015)
T ss_dssp STTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTC
T ss_pred ChhhccchhhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccC
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccchHHHHHHHHHHhCCCc--EEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001301 568 RDWNIGQAKSTVAASAAALINPHL--NTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 645 (1104)
Q Consensus 568 ~~~diG~~Ka~vaa~~l~~~np~~--~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 645 (1104)
+.+|||++||++|+++++++||++ +|+++..+++++++.+|+++||+++|+||+|+||+++|++++++|+.+++|+|+
T Consensus 477 ~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~ 556 (1015)
T 3cmm_A 477 RPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLE 556 (1015)
T ss_dssp CGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred ChhhCCCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 999999999999999999999999 999999999988887888899999999999999999999999999999999999
Q ss_pred cccCCcccceEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHh
Q 001301 646 SGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAM 725 (1104)
Q Consensus 646 ~g~~G~~G~v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~ 725 (1104)
+|+.|++|++++++|+.|+||.|..+|+++.+|.||+++||+.++|||+|||++|+++|+..++++|+|++|| .|++.+
T Consensus 557 ~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~lf~~~~~~~~~~l~~~-~~~~~~ 635 (1015)
T 3cmm_A 557 SGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQP-NFVEQT 635 (1015)
T ss_dssp EEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHCT-THHHHH
T ss_pred eCCCccccceEEEeCCCCCccCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHhhhhhhhhhhccCc-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 677777
Q ss_pred hhcCchhHHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccC
Q 001301 726 KNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSV 805 (1104)
Q Consensus 726 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~ 805 (1104)
.+....+. +.|+.+++.| ..+|.+|++|++||+.+|+++|+++|+|||++||+|++|++|+||||++||+|+||+||+
T Consensus 636 ~~~~~~~~-~~l~~~~~~l-~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~ 713 (1015)
T 3cmm_A 636 LKQSGDVK-GVLESISDSL-SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDI 713 (1015)
T ss_dssp HC---CCH-HHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTTCCCCCCCCCCT
T ss_pred HhccchhH-HHHHHHHHHh-hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCCCCcccCC
Confidence 66544333 6788898888 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHcCCCCC--CCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHH
Q 001301 806 DDLSHLQFLMAASILRAETYGIPIP--DWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 883 (1104)
Q Consensus 806 ~~~~h~~fv~~~a~l~a~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 883 (1104)
+|++|++||+++|+|+|++|||+.+ .|..+.+.+.++++++.+|+|.|+++++|.+++++...++...++.+.+++|.
T Consensus 714 ~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~l~ 793 (1015)
T 3cmm_A 714 YNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLV 793 (1015)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSCCCCSSTTSSCC---------CCHHHH
T ss_pred CCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcCCccCceeccchhhhcccccccccHHHHHHHH
Confidence 9999999999999999999999985 47778999999999999999999999999988765443322222445566777
Q ss_pred HHHHHhhhcCCCCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHH
Q 001301 884 QKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 963 (1104)
Q Consensus 884 ~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lE 963 (1104)
++|++... ..++++.|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|
T Consensus 794 ~~l~~~~~--~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~AivaGl~~lE 871 (1015)
T 3cmm_A 794 SSLPDPST--LAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLE 871 (1015)
T ss_dssp TTSCCGGG--GTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHhccchh--cccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCHHHHHHHhCCcCccchhHHHHHHHHHHHH
Confidence 66655433 2567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccccccccccCcccccCCCCCCccccCCcce-eEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecC
Q 001301 964 LYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYG 1041 (1104)
Q Consensus 964 l~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g 1041 (1104)
+||+++|.++++.|||+|+|||+|+|.|+||.+|++.++..++| |+||||++.+++||++|+++|+++ |++++||++|
T Consensus 872 ~~K~~~~~~~~~~~kn~f~nla~~~~~~~~p~~~~~~~~~~~~~~t~wd~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~ 951 (1015)
T 3cmm_A 872 LYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYG 951 (1015)
T ss_dssp HHHHHTTCCCGGGCCEEEEETTTTEEEEECCCBCCEEEETTEEEETTTCEEEEESCCBHHHHHHHHHHTTCCEEEEEEET
T ss_pred HHHHHhcccchhhhhhHHHhccCCceeecCCCCCCCCCCCCCCCCeEEEEEEECCCCcHHHHHHHHHHHhCCcceeeccC
Confidence 99999987889999999999999999999999999988888999 999999999999999999999999 9999999999
Q ss_pred CceeeccCCc--chhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEEEe
Q 001301 1042 SCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 1103 (1104)
Q Consensus 1042 ~~~LY~~~~~--~~~~~l~~~l~~l~~~v~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v~~~~ 1103 (1104)
++|||++++| ++++||+++|+||++.++++++|++++||+|+|+|+|++++||++|+|+|+|
T Consensus 952 ~~~ly~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~p~v~~~~ 1015 (1015)
T 3cmm_A 952 VSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITIHL 1015 (1015)
T ss_dssp TEEEEETTCCHHHHHHHTTSBHHHHHHHHSSSCCCSSCCEEEEEEEEECTTSCEECCCEEEEEC
T ss_pred CcEEEecCCCchhhHHhccCCHHHHHHhhccCcCCCCceEEEEEEEecCCCCCcCCCCcEEEeC
Confidence 9999999987 7789999999999999999999999999999999999989999999999986
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=2.1e-101 Score=930.13 Aligned_cols=516 Identities=25% Similarity=0.389 Sum_probs=417.8
Q ss_pred hhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHH
Q 001301 502 QISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAA 581 (1104)
Q Consensus 502 qi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa 581 (1104)
|+++||.++|++|++++|+||||||+||++|++||++|| |+|+|+|+|+|+.|||||||||+.+|||++||++|+
T Consensus 3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGV-----G~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa 77 (640)
T 1y8q_B 3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGF-----SHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAK 77 (640)
T ss_dssp ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCC-----CeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHH
Confidence 899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccceEEEeCC
Q 001301 582 SAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPH 661 (1104)
Q Consensus 582 ~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v~v~ip~ 661 (1104)
++++++||+++|+++..++.+++ ++.+|++++|+||+|+||+.+|++++++|+.+++|+|++|+.|+.|++++++|+
T Consensus 78 ~~L~~iNP~v~V~a~~~~i~~~~---~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~ 154 (640)
T 1y8q_B 78 ESVLQFYPKANIVAYHDSIMNPD---YNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKG 154 (640)
T ss_dssp HHHHTTCTTCEEEEEESCTTSTT---SCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHCCCCeEEEEecccchhh---hhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCC
Confidence 99999999999999999886532 446789999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccCh--hhHhhhcCCcHH-HHHHhhhcCchhHHHhHH
Q 001301 662 LTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP--AEVNAYLTSPTE-YASAMKNAGDAQARDNLD 738 (1104)
Q Consensus 662 ~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~ 738 (1104)
.|+||.|..+|+++.+|.||++++|+.++|||+||+++|+++|+..+ ++++.++++|.. +... ......+..+.++
T Consensus 155 ~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 233 (640)
T 1y8q_B 155 VTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPT-EAEARARASNEDG 233 (640)
T ss_dssp TSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCTTSCCC----------------
T ss_pred CCCCcccCCCCCCcccceeeecCCCCchHHHHHHHHHHHHHHhCCcchhhhhcccccchhhhhhhh-hhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999876 234445666532 1111 0111111222344
Q ss_pred HHHHHhhhhcccchHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHH-
Q 001301 739 RVLECLDKERCETFQDCITWARL-RFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMA- 816 (1104)
Q Consensus 739 ~~~~~l~~~~~~~~~~ci~~a~~-~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~- 816 (1104)
.+... .+.+|.+|+.||+. +|+++|+++|+|||++ ++||++ ||+|+||.||..++.|..+...
T Consensus 234 ~~~~~----~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~----------~~fW~~-kr~P~pl~fd~~~~~~~~~~~~~ 298 (640)
T 1y8q_B 234 DIKRI----STKEWAKSTGYDPVKLFTKLFKDDIRYLLTM----------DKLWRK-RKPPVPLDWAEVQSQGEETNASD 298 (640)
T ss_dssp ----------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTC----------GGGCSS-SCCCCCCCHHHHHHC--------
T ss_pred HHHHH----hhhhHHHhHhHHHHHHHHHHHhhHHHHHHhC----------cccccC-CCCCCCcccCccccccccccccc
Confidence 43332 24589999999985 9999999999999974 899999 9999999999988888643100
Q ss_pred HHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCC
Q 001301 817 ASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTG 896 (1104)
Q Consensus 817 ~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 896 (1104)
.+++. .+|++ +.+.++..+......+.++.|.++|...
T Consensus 299 ~~~~~--~~~~~---------------------------------d~~~~~~~~~~~~~~~~~~~l~~~l~~~------- 336 (640)
T 1y8q_B 299 QQNEP--QLGLK---------------------------------DQQVLDVKSYARLFSKSIETLRVHLAEK------- 336 (640)
T ss_dssp --------CCCG---------------------------------GGSCCCHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred ccccc--ccCCC---------------------------------hhhhcChhhhhhhHHHHHHHHHHHhhhc-------
Confidence 00000 11111 0000000000000123455555555432
Q ss_pred CCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCccc
Q 001301 897 YKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLED 976 (1104)
Q Consensus 897 ~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~ 976 (1104)
.++.|++||||||+ |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||++++ ++++
T Consensus 337 ~~~~~~~FdKDDd~--h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~--~~~~ 412 (640)
T 1y8q_B 337 GDGAELIWDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSG--KIDQ 412 (640)
T ss_dssp CTTCCCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTT--CGGG
T ss_pred ccCCCcccCCCCHH--HHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhc--cHHh
Confidence 15789999999997 9999999999999999999999999999999999999999999999999999999997 5899
Q ss_pred ccccccccccC----cccccCCCCCCcccc-CCcceeEEeEEEeCCCCcHHHHHHHH-HHc-CCceeeeec---CCceee
Q 001301 977 YRNTFANLALP----LFSMAEPVPPKVFKH-QDMSWTVWDRWILRDNPTLRQLLQWL-QDK-GLNAYSISY---GSCLLF 1046 (1104)
Q Consensus 977 ~rn~f~nla~p----~~~~~eP~~~~~~~~-~~~~~t~wd~~~v~~~~TL~~li~~~-~~~-~l~~~~i~~---g~~~LY 1046 (1104)
|||+|+|+++| +|.+++|.+|+..++ +...|++|++|++. ++||++|+++| +++ |++++||++ |.++||
T Consensus 413 ~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~-~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~ly 491 (640)
T 1y8q_B 413 CRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVH-KVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILI 491 (640)
T ss_dssp CEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTT-TCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEEE
T ss_pred hhhhheeeccCCCCcEEeecccCCCCCCCcccCCccEEEEEEeCC-CCcHHHHHHHHHHHhhCCCCceEEEEcCCCcEEE
Confidence 99999999999 999999998877653 33467899999877 89999999996 777 999999999 999999
Q ss_pred ccCCcchhhcccCcHHHH-HHhhhcCCCCCCeeEEEEEEEeec
Q 001301 1047 NSMFPRHKERMDKKVVDL-VRDVAKAELPPYRQHFDVVVACVD 1088 (1104)
Q Consensus 1047 ~~~~~~~~~~l~~~l~~l-~~~v~~~~~~~~~~~~~l~~~~~d 1088 (1104)
+.+++++++||+++|+|| ++..++..+++...++.|++.|.-
T Consensus 492 ~~~~~~~~~~l~~~l~el~v~~~~~~~v~d~~~~~~~~i~~~~ 534 (640)
T 1y8q_B 492 SSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILH 534 (640)
T ss_dssp CSSSSSSTTGGGSBGGGGTCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred eccchhhHHhhhCcHHHhCccCCcEEEecCCCccEEEEEEEEe
Confidence 999888899999999995 777777777777777888888754
No 3
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=100.00 E-value=3.3e-69 Score=591.98 Aligned_cols=268 Identities=41% Similarity=0.747 Sum_probs=237.8
Q ss_pred CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccc
Q 001301 672 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCET 751 (1104)
Q Consensus 672 p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 751 (1104)
.-.+++|+||+|+||+.|+|||+|||++|+++|+..++++|+||+|| .|++.+.+.+..+..+.|+.+++.|...+|.+
T Consensus 9 ~~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp-~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~ 87 (276)
T 1z7l_A 9 EFEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDS-KFVERTLRLAGTQPLEVLEAVQRSLVLQRPQT 87 (276)
T ss_dssp -----CCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCS-HHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSS
T ss_pred cCCCCCceeccCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHhhcCh-HHHHHHHhccchhhHHHHHHHHHHHhhcCCCc
Confidence 44678999999999999999999999999999999999999999999 78888887777777788999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 001301 752 FQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPD 831 (1104)
Q Consensus 752 ~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fv~~~a~l~a~~~~i~~~~ 831 (1104)
|++|++|||.+|+++|+++|+|||++||+|++|++|++|||||||+|+||+||+.|++|++||+++|+|+|++|||++.
T Consensus 88 ~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~- 166 (276)
T 1z7l_A 88 WGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGS- 166 (276)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceecccCCCC
Q 001301 832 WVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTN 911 (1104)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n 911 (1104)
.+.+.+.++++++.+|+|.|+++++|.++|++....+..+ +.+.+++|.++|++... ..+.++.|++||||||+|
T Consensus 167 --~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~-~~~~~~~L~~~l~~~~~--~~~~~~~pl~FeKDDd~N 241 (276)
T 1z7l_A 167 --QDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASV-DDSRLEELKATLPSPDK--LPGFKMYPIDFEKDDDSN 241 (276)
T ss_dssp --CCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------C-CSHHHHHHHHHSCCGGG--STTCCCCCCCCCSSCTTS
T ss_pred --CCHHHHHHHHhcCCCCCcCCccccccccchhhhchhcccc-cHHHHHHHHHHhhhhhh--cccccCCCcceecCCCcc
Confidence 5678999999999999999999999999887654443333 34578888888866543 356789999999999999
Q ss_pred chhHHHHHHhhhhhhhcCCCCccHHHHHHHhcccc
Q 001301 912 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRII 946 (1104)
Q Consensus 912 ~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~II 946 (1104)
+|||||+|||||||+||+||++|||++|+||||||
T Consensus 242 ~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 242 FHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence 99999999999999999999999999999999998
No 4
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=100.00 E-value=7.7e-64 Score=599.88 Aligned_cols=379 Identities=24% Similarity=0.334 Sum_probs=309.2
Q ss_pred chhH-HHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchH
Q 001301 96 DIDE-DLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR 174 (1104)
Q Consensus 96 ~~d~-~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K 174 (1104)
++|+ +||+||+++||.++|++|++++|+|+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|||++|
T Consensus 8 ~id~~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~K 87 (531)
T 1tt5_A 8 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87 (531)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBH
T ss_pred cccHHHHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHH
Confidence 4564 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccc------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 175 ALASIQKLQELNNAVAISALTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 175 aea~~~~L~eLNp~V~V~~~~~~l~------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
|++++++|+++||+|+|+++...++ ++++++||+||+|.++.+.+..|+++|++++ +|||++++.|++|++|
T Consensus 88 a~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~v~ 165 (531)
T 1tt5_A 88 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVGYMR 165 (531)
T ss_dssp HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTT--CCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEEEEecCCeEEEE
Confidence 9999999999999999999987764 3688999999999999999999999999999 9999999999999999
Q ss_pred eecCCceEEecCCCCCCccceeccccCCCCC-----------------------ce---eecccccccccCC-------C
Q 001301 249 CDFGPEFTVFDVDGEEPHTGIIASISNDNPP-----------------------LI---SCVDDERIEFQDG-------D 295 (1104)
Q Consensus 249 ~d~g~~f~v~d~~ge~p~~~~i~~i~~~~~~-----------------------lv---~~~~~~~h~~~dg-------d 295 (1104)
++++ .|++++.+|+.+.+. .++..++|. ++ ++++..+.. -+| |
T Consensus 166 ~~~p-~~~~~d~~~~~~~~~--lr~~~p~P~~~~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~-~~g~~P~~~~~ 241 (531)
T 1tt5_A 166 IIIK-EHPVIESHPDNALED--LRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSE-TNGRIPKTYKE 241 (531)
T ss_dssp EECS-CEEESCCCCSSCCCC--CCSSSCCHHHHHHHHTCC-------CGGGSCHHHHHHHHHHHHTTT-TCCCCCCHHHH
T ss_pred EEcC-CceeccCCCCCCCCc--ccccCCCCCchhhhhccCcccccCCCcCCchHHHHHHHHHHHHHHh-cCCCCCCchhh
Confidence 9998 799999988754432 233333333 32 333332211 155 7
Q ss_pred eEEEeEe--ecc----cccCC--------------------------CCCeeeecc----------------------CC
Q 001301 296 LVVFSEV--HGM----TELND--------------------------GKPRKVKNA----------------------RP 321 (1104)
Q Consensus 296 ~v~f~ev--~gm----~~ln~--------------------------~~~~~i~~~----------------------~~ 321 (1104)
.+.|+++ +|| .+.|. ..+.+++.. -|
T Consensus 242 ~~~f~~~i~~~~~~~~~e~N~~Ea~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~s~~Fwil~~alk~F~~~~~~g~lP 321 (531)
T 1tt5_A 242 KEDFRDLIRQGILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLP 321 (531)
T ss_dssp HHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHSCCCCCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTTTSCC
T ss_pred HHHHHHHHHhhcccCccccchHHHHHHHHhhcCCccCcHHHHHHhcccccccccCCCchHHHHHHHHHHHHHhcCCCCCC
Confidence 8889888 788 23332 111112211 37
Q ss_pred cccccccCcccccccccC--------------------CeEEEeec-Ceeeccc------------------chhhhhcC
Q 001301 322 YSFSIDEDTTNYSAYEKG--------------------GIVTQVKQ-PKIINFK------------------PLREALKD 362 (1104)
Q Consensus 322 ~~~~i~~dt~~f~~y~~g--------------------g~~~qvk~-p~~~~f~------------------sL~e~L~~ 362 (1104)
++++|+.-++.+..|.+. |++++++. |+.++|+ +|++.+..
T Consensus 322 l~g~ipDm~s~t~~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~~l~~~~~~ 401 (531)
T 1tt5_A 322 VRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGL 401 (531)
T ss_dssp CCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCCCHHHHHST
T ss_pred CCCccCccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhcccccchHhhhcc
Confidence 788885325555555332 55556666 5555555 55555544
Q ss_pred CC---CccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHhhcCCccccccCHHHHHHH
Q 001301 363 PG---DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFTNINDNLADERVEEIDHKLLCHF 436 (1104)
Q Consensus 363 p~---~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~---~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~ 436 (1104)
|. ..+..++.+.+++..+|++||||++|.++|||+|++++ ++|+++|.+++++++.+.+. .+.++++++++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~ 479 (531)
T 1tt5_A 402 DTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGL--SVMVKDDYVHEF 479 (531)
T ss_dssp TTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHHHHHHHHHHTC--CCCCCHHHHHHH
T ss_pred ccchhhhhhhhhhccccchHHHHHHHHHHHHHHHhCCCCCccccchHHHHHHHHHHHHHHHHhcCC--cccccHHHHHHH
Confidence 41 12567788889999999999999999999999999987 89999999999999887654 246889999999
Q ss_pred HhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCC
Q 001301 437 AFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 482 (1104)
Q Consensus 437 ~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~l 482 (1104)
+|+++++|||||||+||+|||||||+|||||+||+|||||||+++.
T Consensus 480 ~r~~~~el~pvaA~~GGi~AQEviK~iT~q~~Pi~n~~~fDg~~~~ 525 (531)
T 1tt5_A 480 CRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQT 525 (531)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHHHHHTCSBCCCSCEEEETTTTE
T ss_pred HHhcCCCcCHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCCce
Confidence 9999999999999999999999999999999999999999999874
No 5
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=100.00 E-value=9.1e-60 Score=539.24 Aligned_cols=322 Identities=31% Similarity=0.449 Sum_probs=272.0
Q ss_pred CCchhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccch
Q 001301 94 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 173 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 173 (1104)
.++.+.+|||||+++||.++|++|++++|+|+|+||+|+++||||+++|||+|+|+|+|.|+.+||+||||++++|||++
T Consensus 11 l~~~~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~ 90 (346)
T 1y8q_A 11 ISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRN 90 (346)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSB
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCC
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeccc---chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEee
Q 001301 174 RALASIQKLQELNNAVAISALTTEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 174 Kaea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d 250 (1104)
||++++++|+++||+|+|+++...+ .++++++||+||+|.++.+.+..||++|++++ +|||++++.|++|++|+|
T Consensus 91 Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~G~~G~v~~d 168 (346)
T 1y8q_A 91 RAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFAN 168 (346)
T ss_dssp HHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTT--CEEEEEEEEBTEEEEEEE
T ss_pred HHHHHHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEeecccEEEEEEe
Confidence 9999999999999999999998877 35789999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeeccccc-CCCCCeeeeccCCcccccccC
Q 001301 251 FGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTEL-NDGKPRKVKNARPYSFSIDED 329 (1104)
Q Consensus 251 ~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~l-n~~~~~~i~~~~~~~~~i~~d 329 (1104)
+|+++++.+..|+...++ |.+. +++++.++ |
T Consensus 169 ~~~~~~~~~~~~~~~~p~------------------------------------~~~~~~~~~~~~~------------d 200 (346)
T 1y8q_A 169 LGEHEFVEEKTKVAKVSQ------------------------------------GVEDGPDTKRAKL------------D 200 (346)
T ss_dssp CSEEEEEEECC---------------------------------------------------------------------
T ss_pred cCCCCEEEcCCCCcCCCc------------------------------------ccccCCCCCcccc------------c
Confidence 998778877665311111 1110 11122222 1
Q ss_pred cccccccccCCeEEEeecCeeecccchhhhhcCCCCcccccc-ccCCCcchHHHHHHHHHHHHHHhCCCCCC-CCHHHHH
Q 001301 330 TTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDF-SKFDRPPVLHLAFQALDKFIQELGRFPVA-GSEEDAQ 407 (1104)
Q Consensus 330 t~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~-~k~~r~~~l~~~~~al~~F~~~~gr~P~~-~~~~Da~ 407 (1104)
++ ++++.|++++|++|++++..|.. ..++ .+.+|++.+|++|+||++|.++|||+|.+ ++++|++
T Consensus 201 ~~-----------~~~~~~~~~~f~~l~~~~~~~~~--~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d~~ 267 (346)
T 1y8q_A 201 SS-----------ETTMVKKKVVFCPVKEALEVDWS--SEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSE 267 (346)
T ss_dssp -------------CCCEEEEEEECCCHHHHTSCCSC--SHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHHHH
T ss_pred CC-----------ceEEEeceeeccCHHHHhcCCch--hhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 11 34677899999999999998732 1111 34688999999999999999999999974 6789999
Q ss_pred HHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCCC
Q 001301 408 KIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLP 483 (1104)
Q Consensus 408 ~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~lp 483 (1104)
+|.+++.+++++.+.. ...+++++++++ .++|+|||||+||++||||||+|||||+||+||||||+++++.
T Consensus 268 ~l~~~a~~~~~~~~~~-~~~~~~~~~~~~----~~~l~pv~AiiGGi~aQEviK~it~k~~Pl~n~~~fD~~~~~~ 338 (346)
T 1y8q_A 268 LLLQIRNDVLDSLGIS-PDLLPEDFVRYC----FSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNG 338 (346)
T ss_dssp HHHHHHHHHHHTTTCC-GGGSCGGGGGSS----CSBCHHHHHHHHHHHHHHHHHHHHTBSCCCCSEEEEETTTTEE
T ss_pred HHHHHHHHHHHhcCCC-cccCCHHHHHHh----cCCccHHHHHHHHHHHHHHHHHhcCCCcccccEEEEEccccce
Confidence 9999999998876532 234677776654 7899999999999999999999999999999999999999864
No 6
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=7.5e-57 Score=526.79 Aligned_cols=359 Identities=28% Similarity=0.470 Sum_probs=282.5
Q ss_pred CcchhhhhccCHH-------------HH-HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcc
Q 001301 497 SRYDAQISVFGSK-------------LQ-KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS 562 (1104)
Q Consensus 497 ~RYdrqi~l~G~~-------------~q-~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLn 562 (1104)
.||+++-++++.. .+ ..|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+
T Consensus 7 ~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGv-----g~i~ivD~D~Ve~sNL~ 81 (434)
T 1tt5_B 7 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLN 81 (434)
T ss_dssp TTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTC-----CCEEEEECCBCCGGGTT
T ss_pred hhhccceEEEcCCCcccccccccCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCC-----CEEEEEcCCEechhccC
Confidence 4666666664433 34 56699999999999999999999999999 99999999999999999
Q ss_pred cccCcccCccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc---
Q 001301 563 RQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--- 639 (1104)
Q Consensus 563 RQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--- 639 (1104)
|||||+++|||++||++|+++++++||+++|+++..++.+. +.++++++|+||+|+||+++|+++|+.|+.+
T Consensus 82 RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~-----~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~ 156 (434)
T 1tt5_B 82 RQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF-----NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNY 156 (434)
T ss_dssp TCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGB-----CHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCB
T ss_pred CCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchh-----hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999888653 2578999999999999999999999999874
Q ss_pred ---------ccceEecccCCcccceEEEeCCcccccCcCC--CCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccCh
Q 001301 640 ---------QKPLLESGTLGAKCNTQMVIPHLTENYGASR--DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 708 (1104)
Q Consensus 640 ---------~~pli~~g~~G~~G~v~v~ip~~t~~y~~~~--~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~ 708 (1104)
++|+|++|+.|+.|++++++|+.|+||.|.. .|++..+|.|++++||+.++|||+||+.+
T Consensus 157 ~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i--------- 227 (434)
T 1tt5_B 157 EDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML--------- 227 (434)
T ss_dssp SSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT---------
T ss_pred cccccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHH---------
Confidence 9999999999999999999999999999964 36777899999999999999999999751
Q ss_pred hhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCC
Q 001301 709 AEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGT 788 (1104)
Q Consensus 709 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~ 788 (1104)
.|.. . +|
T Consensus 228 ------------------------------------------------~~~~--------------~--~~--------- 234 (434)
T 1tt5_B 228 ------------------------------------------------QWPK--------------E--QP--------- 234 (434)
T ss_dssp ------------------------------------------------HHHH--------------S--CT---------
T ss_pred ------------------------------------------------HHhh--------------h--cc---------
Confidence 0100 0 00
Q ss_pred CcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCcccccccccccc
Q 001301 789 PFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSM 868 (1104)
Q Consensus 789 ~fws~~kr~P~pl~fd~~~~~h~~fv~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 868 (1104)
.+
T Consensus 235 --------~~---------------------------------------------------------------------- 236 (434)
T 1tt5_B 235 --------FG---------------------------------------------------------------------- 236 (434)
T ss_dssp --------TC----------------------------------------------------------------------
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccch
Q 001301 869 STGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPA 948 (1104)
Q Consensus 869 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPA 948 (1104)
.|+.||+||.. |++||++++|.||..|+|+..++..+++++|+||||
T Consensus 237 -------------------------------~~~~~d~d~~~--~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipa 283 (434)
T 1tt5_B 237 -------------------------------EGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283 (434)
T ss_dssp -------------------------------TTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCC
T ss_pred -------------------------------cccccCCCcHH--HHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcc
Confidence 02235666554 999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCC-CcccccccccccccCcc-ccc-CCCCCCccccCCcceeEEeEEEeCCCCcHHHHH
Q 001301 949 IATSTAMATGLVCLELYKVLDGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLL 1025 (1104)
Q Consensus 949 IATTtA~VaGl~~lEl~K~l~~~~-~~~~~rn~f~nla~p~~-~~~-eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li 1025 (1104)
||||||+|+|++++|++|+|.|.. ++..|. .|--+....+ .+. ++.|.+. .++ +.|+++.+.+++||++|+
T Consensus 284 ia~t~aiig~l~a~EaiK~l~g~~~~l~~~l-~~d~~~~~~~~~~~~~~~~~C~--vC~---~~~~~~~~~~~~tl~~~~ 357 (434)
T 1tt5_B 284 VASTNAVIAAVCATEVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCP--ACS---QLPQNIQFSPSAKLQEVL 357 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCCCCSEE-EEECSBSCEEEEECCCCCTTCT--TTC---SSCBCCCC-----CTTHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCcccCceE-EEEcCCCceeEEEeccCCCCCC--ccC---CCCceEEECCCccHHHHH
Confidence 999999999999999999999853 343321 1111111111 111 1222221 122 357888888889999999
Q ss_pred HHHHHc---CCceeeeec----CCceeeccCCc----chhhcccCcHHHH
Q 001301 1026 QWLQDK---GLNAYSISY----GSCLLFNSMFP----RHKERMDKKVVDL 1064 (1104)
Q Consensus 1026 ~~~~~~---~l~~~~i~~----g~~~LY~~~~~----~~~~~l~~~l~~l 1064 (1104)
+++.++ +++.+||++ |.++||+++++ ++++||+|+|+||
T Consensus 358 ~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l 407 (434)
T 1tt5_B 358 DYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407 (434)
T ss_dssp HHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----
T ss_pred HHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHc
Confidence 999886 799999988 68999998865 5678999999999
No 7
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=100.00 E-value=2.5e-53 Score=537.73 Aligned_cols=352 Identities=28% Similarity=0.459 Sum_probs=293.2
Q ss_pred hccCHHHHHHH-hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHH
Q 001301 504 SVFGSKLQKKL-EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAAS 582 (1104)
Q Consensus 504 ~l~G~~~q~kL-~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~ 582 (1104)
-.+|.+.|+++ ++++|+||||||+||+++++|+++|| |+|+|+|+|+|+.|||+|||||+.+|||++||++|++
T Consensus 398 ~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gv-----g~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~ 472 (805)
T 2nvu_B 398 FEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472 (805)
T ss_dssp CCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHH
T ss_pred cCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CcEEEECCCeecccccccccccchhhcCChHHHHHHH
Confidence 45799999988 99999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc------------ccceEecccCC
Q 001301 583 AAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF------------QKPLLESGTLG 650 (1104)
Q Consensus 583 ~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~------------~~pli~~g~~G 650 (1104)
+|+++||+++|+++..++.+. +.+|++++|+||+|+||+++|++||+.|+.+ ++|+|++|+.|
T Consensus 473 ~l~~~np~~~v~~~~~~~~~~-----~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g 547 (805)
T 2nvu_B 473 FLNDRVPNCNVVPHFNKIQDF-----NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG 547 (805)
T ss_dssp HHHHHSTTCEEEEEESCGGGS-----CHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEET
T ss_pred HHHHHCCCCEEEEEecccccc-----HHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEecccc
Confidence 999999999999999988753 2578899999999999999999999999874 99999999999
Q ss_pred cccceEEEeCCcccccCcCC--CCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhc
Q 001301 651 AKCNTQMVIPHLTENYGASR--DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNA 728 (1104)
Q Consensus 651 ~~G~v~v~ip~~t~~y~~~~--~p~~~~~p~Ct~~~fP~~~~hci~wAr~~F~~~f~~~~~~~~~~l~~~~~~~~~~~~~ 728 (1104)
+.|++++++|+.|+||.|.. .|+....|.|+++++|+.++|||+||+..
T Consensus 548 ~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~----------------------------- 598 (805)
T 2nvu_B 548 FKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML----------------------------- 598 (805)
T ss_dssp TEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT-----------------------------
T ss_pred CceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHh-----------------------------
Confidence 99999999999999999964 47777899999999999999999998751
Q ss_pred CchhHHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcc
Q 001301 729 GDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDL 808 (1104)
Q Consensus 729 ~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~ 808 (1104)
.|... +..+
T Consensus 599 ----------------------------~~~~~---------------------------------~~~~---------- 607 (805)
T 2nvu_B 599 ----------------------------QWPKE---------------------------------QPFG---------- 607 (805)
T ss_dssp ----------------------------HHHHH---------------------------------CTTS----------
T ss_pred ----------------------------hcccc---------------------------------cCCC----------
Confidence 01000 0000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHH
Q 001301 809 SHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEK 888 (1104)
Q Consensus 809 ~h~~fv~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 888 (1104)
T Consensus 608 -------------------------------------------------------------------------------- 607 (805)
T 2nvu_B 608 -------------------------------------------------------------------------------- 607 (805)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCCCCceecccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHh
Q 001301 889 CQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVL 968 (1104)
Q Consensus 889 ~~~~~~~~~~~~p~~FeKDDd~n~hidFI~AasNLRA~ny~I~~~d~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l 968 (1104)
.|+.||+||.. |++||++.+|+||..|+|+..++..+++++|+||||||||||+|+|++++|++|+|
T Consensus 608 -----------~~~~~d~~~~~--~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l 674 (805)
T 2nvu_B 608 -----------EGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA 674 (805)
T ss_dssp -----------TTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CcccCCCCCHH--HHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence 12345555543 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CcccccccccccccCcc-ccc-CCCCCCccccCCcceeEEeEEEeCCCCcHHHHHHHHHHc---CCceeeeec--
Q 001301 969 DGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK---GLNAYSISY-- 1040 (1104)
Q Consensus 969 ~~~~-~~~~~rn~f~nla~p~~-~~~-eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li~~~~~~---~l~~~~i~~-- 1040 (1104)
.|.. ++..+. .|--+....+ .+. ++.|.|. .|+ +.|+++.+.+++||++|+++|.++ +++.+||++
T Consensus 675 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~C~--~C~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (805)
T 2nvu_B 675 TSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCP--ACS---QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL 748 (805)
T ss_dssp HCSSCCCCSEE-EEECSBSCEEEEECCCCCTTCT--TTS---CCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEE
T ss_pred hccccccCceE-EecCCCCcccccccCCCCCCCC--eeC---ceeEEEEECCcChHHHHHHHHHhhhccCcccceEEEEc
Confidence 9853 343321 1111111111 111 1222221 122 458899999899999999999886 699999988
Q ss_pred --CCceeeccCCcc----hhhcccCcHHHH
Q 001301 1041 --GSCLLFNSMFPR----HKERMDKKVVDL 1064 (1104)
Q Consensus 1041 --g~~~LY~~~~~~----~~~~l~~~l~~l 1064 (1104)
|.++||++++|+ +++||+|+|+||
T Consensus 749 ~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l 778 (805)
T 2nvu_B 749 EGKNRTLYLQSVTSIEERTRPNLSKTLKEL 778 (805)
T ss_dssp TTEEEEEECCSSHHHHHHHGGGGGSBTTTT
T ss_pred cCCCcEEEecCccchhhhhHhhhcCCHHHc
Confidence 689999998764 678999999999
No 8
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=100.00 E-value=1.3e-35 Score=339.41 Aligned_cols=165 Identities=24% Similarity=0.358 Sum_probs=154.4
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 496 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 496 ~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
.+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.|||+|||||+++|||++
T Consensus 16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gv-----g~itlvD~d~V~~sNL~rq~~~~~~diG~~ 90 (346)
T 1y8q_A 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGV-----KGLTMLDHEQVTPEDPGAQFLIRTGSVGRN 90 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBCCSSCGGGCTTSCSSCTTSB
T ss_pred HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCCcchhhCCCCCccccccCcCC
Confidence 479999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
||++++++|+++||+++|+++..++.+ ...+|++++|+||+|+||.++|.++++.|+.+++|+|++|+.|+.|++
T Consensus 91 Ka~~~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v 165 (346)
T 1y8q_A 91 RAEASLERAQNLNPMVDVKVDTEDIEK-----KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYT 165 (346)
T ss_dssp HHHHHHHHHHHTCTTSEEEEECSCGGG-----CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEE
T ss_pred HHHHHHHHHHhHCCCeEEEEEecccCc-----chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEE
Confidence 999999999999999999999887764 235789999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcCCC
Q 001301 656 QMVIPHLTENYGASRD 671 (1104)
Q Consensus 656 ~v~ip~~t~~y~~~~~ 671 (1104)
.+.++ ...|+.|..+
T Consensus 166 ~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 166 FANLG-EHEFVEEKTK 180 (346)
T ss_dssp EEECS-EEEEEEECC-
T ss_pred EEecC-CCCEEEcCCC
Confidence 99887 4677777433
No 9
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=100.00 E-value=1.3e-35 Score=355.79 Aligned_cols=190 Identities=23% Similarity=0.352 Sum_probs=173.1
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 496 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 496 ~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
.+||+||+++||.++|++|++++|+||||||+||++||+||++|| |+|+|+|+|+|+.|||+|||||+++|||++
T Consensus 12 ~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGV-----g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~ 86 (531)
T 1tt5_A 12 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86 (531)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECCCBBCHHHHHHCTTCCGGGBTSB
T ss_pred HHHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEechhhcccCccCChhhcCcH
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccce
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 655 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~v 655 (1104)
||++++++|+++||+++|+++...+.+..+ ...+|++++|+||+|+||..+|.++++.|+.+++|+|++|+.|+.|++
T Consensus 87 Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v 164 (531)
T 1tt5_A 87 RAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 164 (531)
T ss_dssp HHHHHHHHHHTTCTTSBCCEESSCHHHHHH--SCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCcchhhh--hhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEE
Confidence 999999999999999999999876643111 225788999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHH
Q 001301 656 QMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTW 695 (1104)
Q Consensus 656 ~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~fP~~~~hci~w 695 (1104)
.+++|. ..++.+ +|++...++|++++||..++||-.+
T Consensus 165 ~~~~p~-~~~~d~--~~~~~~~~lr~~~p~P~~~~~~~~~ 201 (531)
T 1tt5_A 165 RIIIKE-HPVIES--HPDNALEDLRLDKPFPELREHFQSY 201 (531)
T ss_dssp EEECSC-EEESCC--CCSSCCCCCCSSSCCHHHHHHHHTC
T ss_pred EEEcCC-ceeccC--CCCCCCCcccccCCCCCchhhhhcc
Confidence 999995 445554 4556778999999999999999654
No 10
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=7.9e-33 Score=323.83 Aligned_cols=282 Identities=18% Similarity=0.233 Sum_probs=212.5
Q ss_pred HHHhhhhhccCH-------------HHHH-HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCcccccc
Q 001301 100 DLHSRQLAVYGR-------------ETMR-RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIF 165 (1104)
Q Consensus 100 ~~Y~RQi~l~G~-------------e~q~-kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~ 165 (1104)
.||.++-++|+. ++++ +|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||++
T Consensus 7 ~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~ 86 (434)
T 1tt5_B 7 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLF 86 (434)
T ss_dssp TTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTC
T ss_pred hhhccceEEEcCCCcccccccccCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCC
Confidence 466666666544 4465 45999999999999999999999999999999999999999999999999
Q ss_pred CcCcccchHHHHHHHHHHHhCCCcEEEEeecccch---hhhcCCceEEEecCCHhHhhhHHHHHHHc------------C
Q 001301 166 SEDDVGKNRALASIQKLQELNNAVAISALTTELTK---EKLSDFQAVVFTDISLEKAVEFDDYCHNH------------Q 230 (1104)
Q Consensus 166 ~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~---e~l~~~dvVV~~~~~~~~~~~ln~~c~~~------------~ 230 (1104)
+++|||++||++++++|+++||+|+|+++...+++ +++++||+||+|.|+.+.+..||++|++. +
T Consensus 87 ~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~ 166 (434)
T 1tt5_B 87 RPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSI 166 (434)
T ss_dssp CGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGC
T ss_pred ChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccC
Confidence 99999999999999999999999999999887643 68899999999999999999999999984 8
Q ss_pred CCcceEEeeecceeEEEEeecCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCC
Q 001301 231 PPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELND 310 (1104)
Q Consensus 231 ~~ipfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~ 310 (1104)
+|+|++++.|+.|++++..+.. .|. ..|+-+ .
T Consensus 167 --iPli~~~~~g~~G~v~v~~p~~---------t~C--------------y~C~~~---------------------~-- 198 (434)
T 1tt5_B 167 --VPLIDGGTEGFKGNARVILPGM---------TAC--------------IECTLE---------------------L-- 198 (434)
T ss_dssp --CCEEEEEEETTEEEEEEECTTT---------SCC--------------GGGGGG---------------------G--
T ss_pred --CcEEEeccccceeEEEEECCCC---------CCC--------------cccccC---------------------C--
Confidence 9999999999999998876421 010 000000 0
Q ss_pred CCCeeeeccCCcccccccCcccccccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHH-
Q 001301 311 GKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDK- 389 (1104)
Q Consensus 311 ~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~- 389 (1104)
.| .. .....+++.. .| +. .-|.+..|..-
T Consensus 199 -~p---------------~~------------------~~~p~Ct~~~---~p------------~~-~~h~i~~a~~i~ 228 (434)
T 1tt5_B 199 -YP---------------PQ------------------VNFPMCTIAS---MP------------RL-PEHCIEYVRMLQ 228 (434)
T ss_dssp -SC---------------CC------------------CCCCHHHHHH---CC------------CS-HHHHHHHHHHTH
T ss_pred -CC---------------Cc------------------CCCccccccc---CC------------cc-hhHHHHHHHHHH
Confidence 00 00 0000011111 11 11 12222223222
Q ss_pred HHHHhCCC---C-CCCCHHHHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhcc
Q 001301 390 FIQELGRF---P-VAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSG 465 (1104)
Q Consensus 390 F~~~~gr~---P-~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTg 465 (1104)
|.+.+... + ...+.++.+.+.+.+++.++.++. ..++...++.++....+.++|++|++||+.|||+||++||
T Consensus 229 ~~~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi---~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g 305 (434)
T 1tt5_B 229 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNI---RGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATS 305 (434)
T ss_dssp HHHSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTC---CCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhcccccccccCCCcHHHHHHHHHHHHHHHHHcCC---CccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhC
Confidence 22222211 1 112456778888888888877764 3456778888888888899999999999999999999999
Q ss_pred CcccccceeeccCCCCC
Q 001301 466 KFHPLLQFFYFDSVESL 482 (1104)
Q Consensus 466 Kf~PI~q~l~fD~~e~l 482 (1104)
+..|++++++||+....
T Consensus 306 ~~~~l~~~l~~d~~~~~ 322 (434)
T 1tt5_B 306 AYIPLNNYLVFNDVDGL 322 (434)
T ss_dssp CSCCCCSEEEEECSBSC
T ss_pred CCcccCceEEEEcCCCc
Confidence 99999999999998665
No 11
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=100.00 E-value=5.2e-34 Score=317.03 Aligned_cols=166 Identities=25% Similarity=0.402 Sum_probs=127.4
Q ss_pred ccCcchhhhhc--cCH-HHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCc
Q 001301 495 LNSRYDAQISV--FGS-KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN 571 (1104)
Q Consensus 495 ~~~RYdrqi~l--~G~-~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~d 571 (1104)
.+-.|+|||.| ||. ++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||+||| |+.+|
T Consensus 12 ~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGV-----G~i~lvD~D~Ve~sNL~Rq~-~~~~d 85 (292)
T 3h8v_A 12 SGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPHQ 85 (292)
T ss_dssp --------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBC-------------CC
T ss_pred CCCCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCccChhhccccc-CChhh
Confidence 34679999988 998 89999999999999999999999999999999 99999999999999999997 68999
Q ss_pred cccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhh-----------ccCCEEEEccCCHHHHHHHhhcccccc
Q 001301 572 IGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFW-----------ENLNVVVNALDNVNARLYIDQRCLYFQ 640 (1104)
Q Consensus 572 iG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-----------~~~DvVi~alDn~~aR~~i~~~c~~~~ 640 (1104)
||++|+++|+++++++||+++|+++..++++.. + + ++|+ +++|+||+|+||+++|.++|+.|+.++
T Consensus 86 iG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~-~-~-~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 86 AGLSKVQAAEHTLRNINPDVLFEVHNYNITTVE-N-F-QHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp TTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHH-H-H-HHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHhhCCCcEEEEecccCCcHH-H-H-HHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhC
Confidence 999999999999999999999999999887521 1 1 2343 689999999999999999999999999
Q ss_pred cceEecccCC--cccceEEEeCCcccccCcC
Q 001301 641 KPLLESGTLG--AKCNTQMVIPHLTENYGAS 669 (1104)
Q Consensus 641 ~pli~~g~~G--~~G~v~v~ip~~t~~y~~~ 669 (1104)
+|+|++|+.| +.|++.+++|+.|+||.|.
T Consensus 163 ~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl 193 (292)
T 3h8v_A 163 QTWMESGVSENAVSGHIQLIIPGESACFACA 193 (292)
T ss_dssp CCEEEEEECTTSSEEEEEEECTTTSCCTTSS
T ss_pred CCEEEeeeecceeEEEEEEECCCCCCCHhhc
Confidence 9999999986 8999999999999999995
No 12
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=99.98 E-value=8.3e-33 Score=303.15 Aligned_cols=165 Identities=31% Similarity=0.449 Sum_probs=155.6
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccc
Q 001301 496 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 573 (1104)
Q Consensus 496 ~~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG 573 (1104)
.+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+.+|||
T Consensus 6 ~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gv-----g~i~lvD~d~v~~sNL~Rq~l~~~~diG 80 (251)
T 1zud_1 6 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDDVHLSNLQRQILFTTEDID 80 (251)
T ss_dssp HHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTC-----SEEEEECCCBCCGGGTTTCTTCCGGGTT
T ss_pred HHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCC-----CeEEEEeCCCcccccCCCCccCChhhCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCccc
Q 001301 574 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 574 ~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||..+|.++++.|+..++|+|++++.|+.|
T Consensus 81 ~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~----~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G 156 (251)
T 1zud_1 81 RPKSQVSQQRLTQLNPDIQLTALQQRLTGEAL----KDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGG 156 (251)
T ss_dssp SBHHHHHHHHHHHHCTTSEEEEECSCCCHHHH----HHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccce
Confidence 99999999999999999999999888765321 46788999999999999999999999999999999999999999
Q ss_pred ceEEEeCCc-ccccCcC
Q 001301 654 NTQMVIPHL-TENYGAS 669 (1104)
Q Consensus 654 ~v~v~ip~~-t~~y~~~ 669 (1104)
++.++.|.. +.||.|.
T Consensus 157 ~v~~~~p~~~~~c~~cl 173 (251)
T 1zud_1 157 QLMVLTPPWEQGCYRCL 173 (251)
T ss_dssp EEEEECTTCTTCCHHHH
T ss_pred EEEEEccCCCCCcEEEe
Confidence 999999987 6899883
No 13
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=99.98 E-value=5.4e-32 Score=296.69 Aligned_cols=153 Identities=26% Similarity=0.404 Sum_probs=145.6
Q ss_pred CchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccc
Q 001301 95 SDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGK 172 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk 172 (1104)
++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||++++++|||+
T Consensus 2 ~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~ 81 (251)
T 1zud_1 2 NDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDR 81 (251)
T ss_dssp CHHHHHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTS
T ss_pred CHHHHHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCC
Confidence 35567899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEE
Q 001301 173 NRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 248 (1104)
Q Consensus 173 ~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf 248 (1104)
+||++++++|+++||+++|+++...+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|+++
T Consensus 82 ~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--~p~i~~~~~g~~G~v~ 159 (251)
T 1zud_1 82 PKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALN--TPLITASAVGFGGQLM 159 (251)
T ss_dssp BHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTT--CCEEEEEEEBTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEeccccceEEE
Confidence 9999999999999999999999887754 467889999999999999999999999999 9999999999999998
Q ss_pred e
Q 001301 249 C 249 (1104)
Q Consensus 249 ~ 249 (1104)
+
T Consensus 160 ~ 160 (251)
T 1zud_1 160 V 160 (251)
T ss_dssp E
T ss_pred E
Confidence 6
No 14
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.97 E-value=6.7e-31 Score=332.72 Aligned_cols=276 Identities=17% Similarity=0.231 Sum_probs=212.3
Q ss_pred hccCHHHHHHh-hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh
Q 001301 107 AVYGRETMRRL-FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL 185 (1104)
Q Consensus 107 ~l~G~e~q~kL-~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL 185 (1104)
+.+|.++|+++ ++++|+|||+||+|++++++|+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++
T Consensus 398 ~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~ 477 (805)
T 2nvu_B 398 FEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR 477 (805)
T ss_dssp CCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHH
Confidence 45899999988 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeecccch---hhhcCCceEEEecCCHhHhhhHHHHHHHc------------CCCcceEEeeecceeEEEEee
Q 001301 186 NNAVAISALTTELTK---EKLSDFQAVVFTDISLEKAVEFDDYCHNH------------QPPIAFIKSEVRGLFGNIFCD 250 (1104)
Q Consensus 186 Np~V~V~~~~~~l~~---e~l~~~dvVV~~~~~~~~~~~ln~~c~~~------------~~~ipfI~~~~~G~~G~vf~d 250 (1104)
||+|+|+++...+++ +++++||+||+|.|+.+.+..||++|+.. + +|+|.+++.|+.|++++.
T Consensus 478 np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~--~p~i~~~~~g~~G~~~~~ 555 (805)
T 2nvu_B 478 VPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSI--VPLIDGGTEGFKGNARVI 555 (805)
T ss_dssp STTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGC--CCEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccC--CcEEEeccccCceeEEEE
Confidence 999999999887754 68899999999999999999999999984 8 999999999999999988
Q ss_pred cCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCc
Q 001301 251 FGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDT 330 (1104)
Q Consensus 251 ~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt 330 (1104)
.+..-.|+ .|.-. . .|. .
T Consensus 556 ~p~~~~c~-----------------------~c~~~---------------------~---~p~---------------~ 573 (805)
T 2nvu_B 556 LPGMTACI-----------------------ECTLE---------------------L---YPP---------------Q 573 (805)
T ss_dssp CTTTSCCT-----------------------TTSGG---------------------G---SCC---------------C
T ss_pred CCCCCCce-----------------------eccCC---------------------C---CCC---------------C
Confidence 64310000 00000 0 000 0
Q ss_pred ccccccccCCeEEEeecCeeecccchhhhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCC---C-CCCCHHHH
Q 001301 331 TNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRF---P-VAGSEEDA 406 (1104)
Q Consensus 331 ~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~---P-~~~~~~Da 406 (1104)
.....+++....+.| ...+..+.+.+ |..++... + ...+.++.
T Consensus 574 ------------------~~~~~c~~~~~~~~~-------------~~~i~~a~~~~--~~~~~~~~~~~~~d~~~~~~~ 620 (805)
T 2nvu_B 574 ------------------VNFPMCTIASMPRLP-------------EHCIEYVRMLQ--WPKEQPFGEGVPLDGDDPEHI 620 (805)
T ss_dssp ------------------CCCCHHHHHHCCCSH-------------HHHHHHHHHTH--HHHHCTTSTTCCCCTTCHHHH
T ss_pred ------------------CCCCccccCCCCCCc-------------cHHHHHHHHhh--cccccCCCCcccCCCCCHHHH
Confidence 000012222211101 01112222222 22333211 1 12246778
Q ss_pred HHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhcchhhHHHHHhhccCcccccceeeccCCCCC
Q 001301 407 QKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 482 (1104)
Q Consensus 407 ~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgKf~PI~q~l~fD~~e~l 482 (1104)
+.+.+.+++.+...+. ..++...++.++....+.++|++|++||+.|||+||++||+..|++++++||+....
T Consensus 621 ~~~~~~~~~~~~~~gi---~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~ 693 (805)
T 2nvu_B 621 QWIFQKSLERASQYNI---RGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL 693 (805)
T ss_dssp HHHHHHHHHHHHHTTC---CCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSC
T ss_pred HHHHHHHHHHHHHhCC---CCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCc
Confidence 8888888888877764 345677888888888899999999999999999999999999999999999998765
No 15
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.97 E-value=1.7e-31 Score=292.45 Aligned_cols=164 Identities=29% Similarity=0.448 Sum_probs=154.4
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCcccc
Q 001301 497 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 574 (1104)
Q Consensus 497 ~RYdrqi~l--~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~ 574 (1104)
+||+||+++ ||.++|++|++++|+|||+||+|++++++|+++|+ |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 10 ~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv-----~~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 84 (249)
T 1jw9_B 10 LRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDTVSLSNLQRQTLHSDATVGQ 84 (249)
T ss_dssp HHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBCCGGGGGTCTTCCGGGTTS
T ss_pred HHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCC-----CeEEEEcCCCcccccCCcccccChhhcCc
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcccc
Q 001301 575 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 575 ~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
+|+++++++++++||.++|+++..++.+++ + .++++++|+||+|+||.++|..+++.|+..++|+|+++..|+.|+
T Consensus 85 ~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~--~--~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~ 160 (249)
T 1jw9_B 85 PKVESARDALTRINPHIAITPVNALLDDAE--L--AALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ 160 (249)
T ss_dssp BHHHHHHHHHHHHCTTSEEEEECSCCCHHH--H--HHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeccCCHhH--H--HHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEE
Confidence 999999999999999999999988776432 1 356889999999999999999999999999999999999999999
Q ss_pred eEEEeCCc-ccccCcC
Q 001301 655 TQMVIPHL-TENYGAS 669 (1104)
Q Consensus 655 v~v~ip~~-t~~y~~~ 669 (1104)
+.++.|.. +.||.|.
T Consensus 161 v~~~~p~~~~~c~~c~ 176 (249)
T 1jw9_B 161 ITVFTYQDGEPCYRCL 176 (249)
T ss_dssp EEEECCCTTCCCTHHH
T ss_pred EEEEeCCCCCCceEEE
Confidence 99999886 6899883
No 16
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.97 E-value=1.5e-30 Score=298.46 Aligned_cols=165 Identities=25% Similarity=0.436 Sum_probs=151.6
Q ss_pred cCcchhhhh---ccC--HHH-HHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCccc
Q 001301 496 NSRYDAQIS---VFG--SKL-QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 569 (1104)
Q Consensus 496 ~~RYdrqi~---l~G--~~~-q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~ 569 (1104)
.+||+||+. +|| .++ |++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+.
T Consensus 92 ~~rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~ 166 (353)
T 3h5n_A 92 NNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGI-----GEIILIDNDQIENTNLTRQVLFSE 166 (353)
T ss_dssp TSTTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEEECCBCCGGGGGTCTTCCG
T ss_pred HHHhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCC-----CeEEEECCCcCcccccccccCCCh
Confidence 389999986 466 455 999999999999999999999999999999 999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHH-HHHHHhhcccccccceEeccc
Q 001301 570 WNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVN-ARLYIDQRCLYFQKPLLESGT 648 (1104)
Q Consensus 570 ~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~-aR~~i~~~c~~~~~pli~~g~ 648 (1104)
+|||++|+++++++++++||+++|+++..++.+++. . .+ ++++|+||+|+||+. +|.++++.|+..++|+|++|.
T Consensus 167 ~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~--~-~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~ 242 (353)
T 3h5n_A 167 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD--L-HK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGY 242 (353)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGG--G-GG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHCCChHHHHHHHHHHHHCCCCeEEEeecccCchhh--h-hH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEE
Confidence 999999999999999999999999999999886542 2 23 789999999999999 999999999999999999999
Q ss_pred CCcccceEE-EeCCcccccCcC
Q 001301 649 LGAKCNTQM-VIPHLTENYGAS 669 (1104)
Q Consensus 649 ~G~~G~v~v-~ip~~t~~y~~~ 669 (1104)
.|..|.+.. ++|+.|+||.|.
T Consensus 243 ~g~~g~~g~~~~p~~~~C~~C~ 264 (353)
T 3h5n_A 243 VNDIAVFGPLYVPGKTGCYECQ 264 (353)
T ss_dssp ETTEEEEEEEECTTTSCCTTTT
T ss_pred eCCEEEEEEEEcCCCCCChhhc
Confidence 999998754 569999999984
No 17
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=99.97 E-value=7e-30 Score=308.41 Aligned_cols=147 Identities=20% Similarity=0.337 Sum_probs=138.6
Q ss_pred hhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH
Q 001301 105 QLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE 184 (1104)
Q Consensus 105 Qi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e 184 (1104)
|+++||.++|++|++++|+|+|+||+|+++|+||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|++
T Consensus 3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~ 82 (640)
T 1y8q_B 3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ 82 (640)
T ss_dssp ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeecccc-----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEEEeecCC
Q 001301 185 LNNAVAISALTTELT-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 253 (1104)
Q Consensus 185 LNp~V~V~~~~~~l~-----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~vf~d~g~ 253 (1104)
+||+|+|+++...++ .+++.+||+||+|.|+.+.+..+|++|++++ +|+|.+++.|+.|++++..+.
T Consensus 83 iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~--iPlI~~g~~G~~G~v~vi~p~ 154 (640)
T 1y8q_B 83 FYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAAD--VPLIESGTAGYLGQVTTIKKG 154 (640)
T ss_dssp TCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHT--CCEEEEEEETTEEEEEEECTT
T ss_pred HCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecccceEEEECCC
Confidence 999999999988774 3678999999999999999999999999999 999999999999999998653
No 18
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.96 E-value=9e-30 Score=287.21 Aligned_cols=160 Identities=20% Similarity=0.273 Sum_probs=141.9
Q ss_pred hccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHH
Q 001301 504 SVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASA 583 (1104)
Q Consensus 504 ~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~ 583 (1104)
|+++..++++|++++|+||||||+||+++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+|++|+++|+++
T Consensus 22 Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGV-----g~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~ 96 (340)
T 3rui_A 22 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV-----RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAAS 96 (340)
T ss_dssp HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHH
T ss_pred hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEecCCEeccccccccccCChhhcChHHHHHHHHH
Confidence 6677777889999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEeeecccCCc-------cccccc----hhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcc
Q 001301 584 AALINPHLNTEALQIRANP-------ETENVF----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 584 l~~~np~~~i~~~~~~v~~-------~~~~~~----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
++++||+++++++...+.. +....+ -.++++++|+||+|+||+++|.++++.|+.+++|+|+++ .|+.
T Consensus 97 L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~ 175 (340)
T 3rui_A 97 LKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFD 175 (340)
T ss_dssp HHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSS
T ss_pred HHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecce
Confidence 9999999999999866521 000001 146789999999999999999999999999999999976 9999
Q ss_pred cceEEEe-------CCcccccCcC
Q 001301 653 CNTQMVI-------PHLTENYGAS 669 (1104)
Q Consensus 653 G~v~v~i-------p~~t~~y~~~ 669 (1104)
|++.++. |..++||.|.
T Consensus 176 G~l~v~~g~~~~~~~~~~~Cy~C~ 199 (340)
T 3rui_A 176 SYLVMRHGNRDEQSSKQLGCYFCH 199 (340)
T ss_dssp EEEEEECCCCCSSCCCCBCCGGGG
T ss_pred EEEEEeecccccCCCCCCCeeeeC
Confidence 9998763 5678999994
No 19
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-30 Score=325.15 Aligned_cols=184 Identities=23% Similarity=0.327 Sum_probs=162.1
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccc
Q 001301 496 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 575 (1104)
Q Consensus 496 ~~RYdrqi~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~ 575 (1104)
.+||+||+++||.++|++|++++|+||||||+||++|++|+++|| |+|+|+|.|.|+.|||+||||++.+|||++
T Consensus 7 ~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGV-----g~itlvD~D~V~~sNL~RQ~l~~~~dvG~~ 81 (1015)
T 3cmm_A 7 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGV-----KSMTVFDPEPVQLADLSTQFFLTEKDIGQK 81 (1015)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCC-----SEEEEECCSBCCGGGGGTCTTCCGGGTTSB
T ss_pred hHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCC-----CeEEEecCCEechhhhccccccChhhcChH
Confidence 479999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEeeecccCCccccccchhhhhccCCEEEEccC-CHHHHHHHhhcccccccceEecccCCcccc
Q 001301 576 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALD-NVNARLYIDQRCLYFQKPLLESGTLGAKCN 654 (1104)
Q Consensus 576 Ka~vaa~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~i~~~c~~~~~pli~~g~~G~~G~ 654 (1104)
||++++++|+++||+++|+++...+++ ++++++|+||+|.| |..+|..++++|+..++|+|.+++.|+.|+
T Consensus 82 Ka~a~~~~L~~lNP~v~v~~~~~~l~~--------~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~ 153 (1015)
T 3cmm_A 82 RGDVTRAKLAELNAYVPVNVLDSLDDV--------TQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGN 153 (1015)
T ss_dssp HHHHHHHHHTTSCTTSCEEECCCCCCS--------TTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEecCCCCH--------HHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEE
Confidence 999999999999999999999887743 46789999999999 999999999999999999999999999999
Q ss_pred eEEEeCCcccccCcCC-CC-CCCCCCcccccCCCCChhhHHHHHH
Q 001301 655 TQMVIPHLTENYGASR-DP-PEKQAPMCTVHSFPHNIDHCLTWAR 697 (1104)
Q Consensus 655 v~v~ip~~t~~y~~~~-~p-~~~~~p~Ct~~~fP~~~~hci~wAr 697 (1104)
+.+. ..+||.|.. ++ +...+.+|++ +-| .+.||+.|-|
T Consensus 154 v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p-~~v~~l~~~~ 193 (1015)
T 3cmm_A 154 TFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPD-GTVTMLDDNR 193 (1015)
T ss_dssp EEEE---CCSCEEESBSSCCCCCEEEEEEE-CTT-CEEEESTTCC
T ss_pred EEec---CCCceEEeeCCCCCCccccccCC-CCC-ceeEeeeccc
Confidence 8664 357888842 22 2234455666 334 3577876545
No 20
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.95 E-value=5.1e-28 Score=264.90 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=146.4
Q ss_pred CCchhHHHHhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCccc
Q 001301 94 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 171 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 171 (1104)
.++.+.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+++||+||++++++|||
T Consensus 4 l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG 83 (249)
T 1jw9_B 4 LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVG 83 (249)
T ss_dssp CCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTT
T ss_pred CCHHHHHHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcC
Confidence 456677899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeEEE
Q 001301 172 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 172 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~v 247 (1104)
++||++++++|+++||.++|+++...+++ +++.++|+||+|.++.+.+..++++|++.+ +|+|++++.|+.|++
T Consensus 84 ~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~g~v 161 (249)
T 1jw9_B 84 QPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAK--VPLVSGAAIRMEGQI 161 (249)
T ss_dssp SBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHT--CCEEEEEEEBTEEEE
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEEeeeccceEEE
Confidence 99999999999999999999998877754 467899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001301 248 FCD 250 (1104)
Q Consensus 248 f~d 250 (1104)
++.
T Consensus 162 ~~~ 164 (249)
T 1jw9_B 162 TVF 164 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 21
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=99.95 E-value=4.7e-28 Score=269.25 Aligned_cols=148 Identities=20% Similarity=0.299 Sum_probs=114.0
Q ss_pred HHhhhhhc--cCH-HHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHH
Q 001301 101 LHSRQLAV--YGR-ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALA 177 (1104)
Q Consensus 101 ~Y~RQi~l--~G~-e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea 177 (1104)
-|+|||.| ||. ++|+||++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||| ++++|||++||++
T Consensus 15 ~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~a 93 (292)
T 3h8v_A 15 VPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQA 93 (292)
T ss_dssp -----------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHH
T ss_pred CchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHH
Confidence 59999988 998 9999999999999999999999999999999999999999999999999997 5889999999999
Q ss_pred HHHHHHHhCCCcEEEEeecccch-----hhh-----------cCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeec
Q 001301 178 SIQKLQELNNAVAISALTTELTK-----EKL-----------SDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVR 241 (1104)
Q Consensus 178 ~~~~L~eLNp~V~V~~~~~~l~~-----e~l-----------~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~ 241 (1104)
++++|+++||+|+|+++...+++ +++ +++|+||+|.|+++.+..||++|++++ +|||++++.
T Consensus 94 a~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~--~Pli~~gv~ 171 (292)
T 3h8v_A 94 AEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG--QTWMESGVS 171 (292)
T ss_dssp HHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT--CCEEEEEEC
T ss_pred HHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhC--CCEEEeeee
Confidence 99999999999999999887763 233 689999999999999999999999999 999999987
Q ss_pred c--eeEEEEeec
Q 001301 242 G--LFGNIFCDF 251 (1104)
Q Consensus 242 G--~~G~vf~d~ 251 (1104)
| +.|++.+..
T Consensus 172 ~~~~~Gqv~~~~ 183 (292)
T 3h8v_A 172 ENAVSGHIQLII 183 (292)
T ss_dssp TTSSEEEEEEEC
T ss_pred cceeEEEEEEEC
Confidence 6 889887654
No 22
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=99.95 E-value=2e-28 Score=292.15 Aligned_cols=160 Identities=20% Similarity=0.276 Sum_probs=141.3
Q ss_pred hccCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHH
Q 001301 504 SVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASA 583 (1104)
Q Consensus 504 ~l~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~ 583 (1104)
|+++..++++|++++|+||||||+||++|++|+++|| |+|+|+|.|+|+.|||+||+||+.+|||++||++|+++
T Consensus 314 Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGV-----G~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~ 388 (615)
T 4gsl_A 314 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV-----RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAAS 388 (615)
T ss_dssp HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHH
T ss_pred hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHH
Confidence 5678888899999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEeeecccCC-------ccccccc----hhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCcc
Q 001301 584 AALINPHLNTEALQIRAN-------PETENVF----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 652 (1104)
Q Consensus 584 l~~~np~~~i~~~~~~v~-------~~~~~~~----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~~ 652 (1104)
++++||+++|+++...+. ++....+ ..++++++|+||+|+||.++|.++++.|+.+++|+|+++ .|+.
T Consensus 389 L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~ 467 (615)
T 4gsl_A 389 LKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFD 467 (615)
T ss_dssp HHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSS
T ss_pred HHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccce
Confidence 999999999999986552 1000011 146789999999999999999999999999999999976 8999
Q ss_pred cceEEEe-------CCcccccCcC
Q 001301 653 CNTQMVI-------PHLTENYGAS 669 (1104)
Q Consensus 653 G~v~v~i-------p~~t~~y~~~ 669 (1104)
|++.++- |..++||.|.
T Consensus 468 Gql~v~~g~~~~~~~~~~~CY~Cl 491 (615)
T 4gsl_A 468 SYLVMRHGNRDEQSSKQLGCYFCH 491 (615)
T ss_dssp EEEEEECCC------CCCCCTTTS
T ss_pred eEEEEeecccccCCCCCCCceeeC
Confidence 9997753 4578999995
No 23
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=99.95 E-value=3.1e-28 Score=290.72 Aligned_cols=165 Identities=19% Similarity=0.298 Sum_probs=145.7
Q ss_pred Ccchhhhhc-------cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCccc
Q 001301 497 SRYDAQISV-------FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 569 (1104)
Q Consensus 497 ~RYdrqi~l-------~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~ 569 (1104)
.||+||+++ ++..+|++|++++|+||||||+||++|++|+++|| |+|+|+|+|+||.|||+||+||+.
T Consensus 301 a~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGV-----G~ItLvD~D~Ve~SNL~RQ~L~~~ 375 (598)
T 3vh1_A 301 ADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV-----RKITFVDNGTVSYSNPVRQALYNF 375 (598)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTC-----CEEEEECCSBCCTTSTTTSTTCCS
T ss_pred HHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCcccccccccccccch
Confidence 689988886 56667899999999999999999999999999999 999999999999999999999999
Q ss_pred CccccchHHHHHHHHHHhCCCcEEeeecccCC-------cc-----c-cccchhhhhccCCEEEEccCCHHHHHHHhhcc
Q 001301 570 WNIGQAKSTVAASAAALINPHLNTEALQIRAN-------PE-----T-ENVFNDTFWENLNVVVNALDNVNARLYIDQRC 636 (1104)
Q Consensus 570 ~diG~~Ka~vaa~~l~~~np~~~i~~~~~~v~-------~~-----~-~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c 636 (1104)
+|||++||++|+++++++||+++|+++..++. .+ + +++ .++++++|+||+|+||+++|..+++.|
T Consensus 376 ~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l--~~li~~~DvVvdatDn~~tR~lin~~c 453 (598)
T 3vh1_A 376 EDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRL--RALIKEHDIIFLLVDSRESRWLPSLLS 453 (598)
T ss_dssp TTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHH--HHHHHHCSEEEECCSBGGGTHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHH--HHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987752 10 0 111 467889999999999999999999999
Q ss_pred cccccceEecccCCcccceEEEe---C----CcccccCcC
Q 001301 637 LYFQKPLLESGTLGAKCNTQMVI---P----HLTENYGAS 669 (1104)
Q Consensus 637 ~~~~~pli~~g~~G~~G~v~v~i---p----~~t~~y~~~ 669 (1104)
+.+++|+|++ +.|+.|++.++- | ..++||.|.
T Consensus 454 ~~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl 492 (598)
T 3vh1_A 454 NIENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCH 492 (598)
T ss_dssp HHTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTS
T ss_pred HhcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeec
Confidence 9999999985 689999987663 3 357899994
No 24
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.94 E-value=2.5e-27 Score=271.68 Aligned_cols=152 Identities=20% Similarity=0.317 Sum_probs=140.0
Q ss_pred CchhHHHHhhhhh---ccCH--HH-HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcC
Q 001301 95 SDIDEDLHSRQLA---VYGR--ET-MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSED 168 (1104)
Q Consensus 95 ~~~d~~~Y~RQi~---l~G~--e~-q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~ 168 (1104)
++.+.+||+||+. +||. ++ |++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+|||+++++
T Consensus 88 ~~~~~~rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~ 167 (353)
T 3h5n_A 88 NSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSED 167 (353)
T ss_dssp CSCTTSTTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGG
T ss_pred CHHHHHHhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChH
Confidence 3556789999976 4774 56 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEeecccchhh----hcCCceEEEecCCHh-HhhhHHHHHHHcCCCcceEEeeecce
Q 001301 169 DVGKNRALASIQKLQELNNAVAISALTTELTKEK----LSDFQAVVFTDISLE-KAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 169 diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~e~----l~~~dvVV~~~~~~~-~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
|||++||++++++|+++||+|+|+++...++++. +++||+||+|.|+.. .+..+|++|++++ +|+|++++.|.
T Consensus 168 diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~--~p~i~~~~~g~ 245 (353)
T 3h5n_A 168 DVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRAN--QPYINAGYVND 245 (353)
T ss_dssp GTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHHHHHTT--CCEEEEEEETT
T ss_pred HCCChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhHhccCCEEEEecCChHHHHHHHHHHHHHhC--CCEEEEEEeCC
Confidence 9999999999999999999999999988775433 789999999999988 9999999999999 99999999988
Q ss_pred eEEEE
Q 001301 244 FGNIF 248 (1104)
Q Consensus 244 ~G~vf 248 (1104)
.|++-
T Consensus 246 ~g~~g 250 (353)
T 3h5n_A 246 IAVFG 250 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88763
No 25
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.93 E-value=1.7e-25 Score=252.50 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=141.4
Q ss_pred chhHHHHhhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHH
Q 001301 96 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 175 (1104)
Q Consensus 96 ~~d~~~Y~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 175 (1104)
..|.++--..+|+|+..++++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||
T Consensus 11 ~~~lnl~lm~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka 90 (340)
T 3rui_A 11 SVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKA 90 (340)
T ss_dssp HHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHH
T ss_pred HHHHHHHHHHHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHH
Confidence 45666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeeccc---------------c----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceE
Q 001301 176 LASIQKLQELNNAVAISALTTEL---------------T----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFI 236 (1104)
Q Consensus 176 ea~~~~L~eLNp~V~V~~~~~~l---------------~----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI 236 (1104)
++++++|+++||+|+++.+...+ + .++++++|+||+|.|+.+.+..+|++|++++ +|+|
T Consensus 91 ~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~--~plI 168 (340)
T 3rui_A 91 ELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIEN--KTVI 168 (340)
T ss_dssp HHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTT--CEEE
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcC--CcEE
Confidence 99999999999999999987543 2 3578899999999999999999999999999 9999
Q ss_pred EeeecceeEEEEeecC
Q 001301 237 KSEVRGLFGNIFCDFG 252 (1104)
Q Consensus 237 ~~~~~G~~G~vf~d~g 252 (1104)
.++ .|+.|++++..|
T Consensus 169 ~aa-~G~~G~l~v~~g 183 (340)
T 3rui_A 169 NAA-LGFDSYLVMRHG 183 (340)
T ss_dssp EEE-ECSSEEEEEECC
T ss_pred Eee-ecceEEEEEeec
Confidence 975 999999988543
No 26
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=99.92 E-value=1.3e-25 Score=268.24 Aligned_cols=147 Identities=15% Similarity=0.214 Sum_probs=135.9
Q ss_pred hhhhhccCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHH
Q 001301 103 SRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKL 182 (1104)
Q Consensus 103 ~RQi~l~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L 182 (1104)
-...|+|+..++++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|||++||++++++|
T Consensus 310 lm~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L 389 (615)
T 4gsl_A 310 LMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASL 389 (615)
T ss_dssp HHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHH
T ss_pred HHHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeeccc---------------c----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 183 QELNNAVAISALTTEL---------------T----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 183 ~eLNp~V~V~~~~~~l---------------~----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
+++||.|+|+++...+ + .++++++|+||+|.|+.+.+..+|++|++++ +|+|.++ .|+
T Consensus 390 ~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~--~PlI~aa-lG~ 466 (615)
T 4gsl_A 390 KRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIEN--KTVINAA-LGF 466 (615)
T ss_dssp HHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTT--CEEEEEE-ECS
T ss_pred HhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcC--CeEEEEE-ccc
Confidence 9999999999987533 2 2468899999999999999999999999999 9999975 999
Q ss_pred eEEEEeecC
Q 001301 244 FGNIFCDFG 252 (1104)
Q Consensus 244 ~G~vf~d~g 252 (1104)
.|++.+..|
T Consensus 467 ~Gql~v~~g 475 (615)
T 4gsl_A 467 DSYLVMRHG 475 (615)
T ss_dssp SEEEEEECC
T ss_pred eeEEEEeec
Confidence 999988654
No 27
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=99.92 E-value=5.9e-25 Score=262.60 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=141.0
Q ss_pred CCchhHHHHhhhhhc-------cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccC
Q 001301 94 PSDIDEDLHSRQLAV-------YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFS 166 (1104)
Q Consensus 94 ~~~~d~~~Y~RQi~l-------~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~ 166 (1104)
....+..+|+||+++ ||..+|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++
T Consensus 295 l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~ 374 (598)
T 3vh1_A 295 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN 374 (598)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCC
T ss_pred cCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccc
Confidence 334566789999987 6677899999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHhCCCcEEEEeeccc---------------c----hhhhcCCceEEEecCCHhHhhhHHHHHH
Q 001301 167 EDDVGKNRALASIQKLQELNNAVAISALTTEL---------------T----KEKLSDFQAVVFTDISLEKAVEFDDYCH 227 (1104)
Q Consensus 167 ~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l---------------~----~e~l~~~dvVV~~~~~~~~~~~ln~~c~ 227 (1104)
++|||++||++++++|+++||.|+|+++...+ + +++++++|+||+|.|+.+.+..+|++|+
T Consensus 375 ~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~ 454 (598)
T 3vh1_A 375 FEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN 454 (598)
T ss_dssp STTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987553 2 2478899999999999999999999999
Q ss_pred HcCCCcceEEeeecceeEEEEeec
Q 001301 228 NHQPPIAFIKSEVRGLFGNIFCDF 251 (1104)
Q Consensus 228 ~~~~~ipfI~~~~~G~~G~vf~d~ 251 (1104)
+++ +|+|.+ +.|+.|++++-.
T Consensus 455 ~~~--~plI~a-a~G~~Gqv~v~~ 475 (598)
T 3vh1_A 455 IEN--KTVINA-ALGFDSYLVMRH 475 (598)
T ss_dssp HTT--CEEEEE-EECSSEEEEEEE
T ss_pred hcC--CCEEEE-EECCccEEEEEc
Confidence 999 999986 789999987643
No 28
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=99.91 E-value=2.7e-25 Score=210.74 Aligned_cols=111 Identities=46% Similarity=0.856 Sum_probs=108.6
Q ss_pred ecCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccC
Q 001301 250 DFGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDED 329 (1104)
Q Consensus 250 d~g~~f~v~d~~ge~p~~~~i~~i~~~~~~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~d 329 (1104)
|||++|.|.|++||+|.+++|.+|+++.+++|+|+++.+|+|+|||+|+|++|+||+++|++.|++|++++||+|+| +|
T Consensus 1 DFG~~F~V~D~dGE~p~~~~I~~Is~~~~g~Vt~~~~~~H~l~dGD~V~FseV~GM~eLN~~~p~~i~v~~p~tf~I-~d 79 (112)
T 2v31_A 1 EFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGMIQLNGCQPMEIKVLGPYTFSI-CD 79 (112)
T ss_dssp CCSCCCCCCCCCCSSCCEEEEEEECCSSSEEEEECTTCCCCCCTTCEEEECSEESCCTTGGGCCEEEEECSSSEEEE-SC
T ss_pred CCCCCcEEECCCCCccceeeeeeeecCCCcEEEEecCCccCCcCCCEEEEEeeEcchhhCCCcceEEEEcCCCEEEE-ec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred cccccccccCCeEEEeecCeeecccchhhhhc
Q 001301 330 TTNYSAYEKGGIVTQVKQPKIINFKPLREALK 361 (1104)
Q Consensus 330 t~~f~~y~~gg~~~qvk~p~~~~f~sL~e~L~ 361 (1104)
|+.|++|.+||+++|||+|++++|+||+++|.
T Consensus 80 ts~f~~Y~~GG~~tqVK~p~~~~FksL~~~l~ 111 (112)
T 2v31_A 80 TSNFSDYIRGGIVSQVKVPKKISFKSLPASLV 111 (112)
T ss_dssp CTTSCCCCEECEEECCCCCCSCCCCCCSCCSC
T ss_pred ccccccccCCeEEEEEeCCeEEcccCHHHHhh
Confidence 99999999999999999999999999999875
No 29
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=98.43 E-value=4.5e-07 Score=99.65 Aligned_cols=55 Identities=36% Similarity=0.487 Sum_probs=42.1
Q ss_pred HHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcch--hHHHHHHHHHHHHHHcCCCCC
Q 001301 767 FADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLS--HLQFLMAASILRAETYGIPIP 830 (1104)
Q Consensus 767 F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~--h~~fv~~~a~l~a~~~~i~~~ 830 (1104)
|...+++|+..+|..... . .....|+.||.+|.. |++||.|||||||.+|||+..
T Consensus 207 ~~~~~~~L~~~l~~~~~~-------~--~~~~~pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~ 263 (276)
T 1z7l_A 207 DDSRLEELKATLPSPDKL-------P--GFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPA 263 (276)
T ss_dssp CSHHHHHHHHHSCCGGGS-------T--TCCCCCCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHhhhhhhc-------c--cccCCCcceecCCCcccHHHHHHHHHHHHHHHcCCCcC
Confidence 445677777777653211 1 123568999999999 999999999999999999865
No 30
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=97.16 E-value=0.00017 Score=66.74 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=50.6
Q ss_pred EEeCCCCcHHHHHHHHHHc---CCceeeeecC----CceeeccCCc----chhhcccCcHHHH-HHh-----hhcCCCC
Q 001301 1013 WILRDNPTLRQLLQWLQDK---GLNAYSISYG----SCLLFNSMFP----RHKERMDKKVVDL-VRD-----VAKAELP 1074 (1104)
Q Consensus 1013 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g----~~~LY~~~~~----~~~~~l~~~l~~l-~~~-----v~~~~~~ 1074 (1104)
+++..+.||++||+++.+. .+..++|+.+ .+.||....| .++.||+|+|.|| +++ |+++.+|
T Consensus 9 l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~~p 87 (98)
T 1y8x_B 9 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTP 87 (98)
T ss_dssp EECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTCS
T ss_pred EEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCCCc
Confidence 5677789999999999996 8999999988 8999998865 4578999999999 542 4555554
No 31
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=97.15 E-value=0.00051 Score=73.31 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=71.5
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|||||.|.+|...++.|..+|. .+++++++... . .+.|.+- -.++...
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~------------------~----l~~l~~~---~~i~~i~ 81 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA------------------E----INEWEAK---GQLRVKR 81 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH------------------H----HHHHHHT---TSCEEEC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH------------------H----HHHHHHc---CCcEEEE
Confidence 5789999999999999999999999997 79999863210 0 1122222 2345566
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
..+.++.+.++|+||.++++.+....+.+.|+ .+ ||+-.+
T Consensus 82 ~~~~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~g--i~VNvv 121 (223)
T 3dfz_A 82 KKVGEEDLLNVFFIVVATNDQAVNKFVKQHIK-ND--QLVNMA 121 (223)
T ss_dssp SCCCGGGSSSCSEEEECCCCTHHHHHHHHHSC-TT--CEEEC-
T ss_pred CCCCHhHhCCCCEEEECCCCHHHHHHHHHHHh-CC--CEEEEe
Confidence 77778889999999999988888888888998 88 775443
No 32
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=96.99 E-value=0.0012 Score=73.19 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=62.7
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.+++++|+|+|+||+|..++..|...|+++|+|++.+ ..|++.+++.+....|.+++....
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~ 184 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD 184 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEEC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcC
Confidence 4678999999999999999999999999999999753 248888999999888877776654
Q ss_pred cccchhhhcCCceEEEec
Q 001301 196 TELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~ 213 (1104)
..--++.+.++|+||.|+
T Consensus 185 ~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 185 ARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp STTHHHHHHHSSEEEECS
T ss_pred HHHHHHHHhcCCEEEECC
Confidence 211123456788888776
No 33
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=96.74 E-value=0.0016 Score=72.18 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=62.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.+++++++|+|+||+|..++..|+..|+ ++|+|++.+ ..|++.+++.+....|.++
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~-----~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~ 179 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLD-------------------TSRAQALADVINNAVGREA 179 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTC-----SEEEEECSS-------------------HHHHHHHHHHHHHHHTSCC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEECC-------------------HHHHHHHHHHHHhhcCCce
Confidence 3678899999999999999999999999 899998644 2578888888888877777
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
+.++.. . ++ .+...++|+||+|+
T Consensus 180 i~~~~~--~----~l--~~~l~~~DiVInaT 202 (283)
T 3jyo_A 180 VVGVDA--R----GI--EDVIAAADGVVNAT 202 (283)
T ss_dssp EEEECS--T----TH--HHHHHHSSEEEECS
T ss_pred EEEcCH--H----HH--HHHHhcCCEEEECC
Confidence 765531 1 11 23457899999997
No 34
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=96.66 E-value=0.0043 Score=68.17 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=74.6
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCcc--ccccCcCcccchHHHHHHHHHHHh-C-----C
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSS--NFIFSEDDVGKNRALASIQKLQEL-N-----N 187 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~r--qf~~~~~diGk~Kaea~~~~L~eL-N-----p 187 (1104)
.|++.+|||+|+|.+|...++.|..+|. +|+++|++.... +.. +-+....| . ++. ....+.+ | .
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~--l~~~~~~l~~~~~--~-~~~--~~~~~~~~~~~~~~~ 81 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKS--IIPKFGKFIQNKD--Q-PDY--REDAKRFINPNWDPT 81 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTT--HHHHHCGGGC----------------CEEECTTCCTT
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcc--hhHHHHHHHhccc--c-ccc--cchhhcccccccccc
Confidence 4678999999999999999999999996 699999754211 100 00000000 0 000 0000000 0 1
Q ss_pred CcEE-EEeecccchhhhc------CCceEEEecCCHhHhhhHHHHHHHc---CCCcceEEeeecce
Q 001301 188 AVAI-SALTTELTKEKLS------DFQAVVFTDISLEKAVEFDDYCHNH---QPPIAFIKSEVRGL 243 (1104)
Q Consensus 188 ~V~V-~~~~~~l~~e~l~------~~dvVV~~~~~~~~~~~ln~~c~~~---~~~ipfI~~~~~G~ 243 (1104)
.-.| ..+...+.++.+. ++|+||.++++.+....+.+.|+++ + +|+-.++--.+
T Consensus 82 ~g~i~~~i~~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~--i~VNvvd~pel 145 (274)
T 1kyq_A 82 KNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQ--QLVNVADKPDL 145 (274)
T ss_dssp SCCCSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTT--SEEEETTCGGG
T ss_pred cCCeeEEEcCCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCC--cEEEECCCccc
Confidence 1234 5666667777777 8999999999888888999999998 8 77755444333
No 35
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=96.58 E-value=0.0087 Score=70.67 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=75.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.|++.+|+|+|.|.+|...++.|..+|. +++++|++... .++++-..-.++.+.
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~-------------------------~~~~l~~~~~i~~~~ 62 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP-------------------------QFTVWANEGMLTLVE 62 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH-------------------------HHHHHHTTTSCEEEE
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH-------------------------HHHHHHhcCCEEEEE
Confidence 3678999999999999999999999996 79999974211 122222122455666
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
..+.++.+.++|+||.+.+..+....+.+.|++++ +|+-.++--.+
T Consensus 63 ~~~~~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~--i~vn~~d~~e~ 108 (457)
T 1pjq_A 63 GPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRR--IFCNVVDAPKA 108 (457)
T ss_dssp SSCCGGGGTTCSEEEECCSCHHHHHHHHHHHHHTT--CEEEETTCTTS
T ss_pred CCCCccccCCccEEEEcCCCHHHHHHHHHHHHHcC--CEEEECCCccc
Confidence 77777788999999999988877888999999999 88644444333
No 36
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=96.53 E-value=0.0036 Score=58.40 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=62.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.++|+|+|+|++|..+++.|...|. -+++++|.+. .|.+.+ . .+.+.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~-----~~v~~~~r~~-------------------~~~~~~----~--~~~~~~-- 52 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSN-----YSVTVADHDL-------------------AALAVL----N--RMGVAT-- 52 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSS-----EEEEEEESCH-------------------HHHHHH----H--TTTCEE--
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC-----ceEEEEeCCH-------------------HHHHHH----H--hCCCcE--
Confidence 4689999999999999999999995 4888887531 122211 1 233333
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEec
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
+...+... +.+ .+.++++|+||+|+.. .....+...|...+++.++.
T Consensus 53 ~~~d~~~~-~~~--~~~~~~~d~vi~~~~~-~~~~~~~~~~~~~g~~~~~~ 99 (118)
T 3ic5_A 53 KQVDAKDE-AGL--AKALGGFDAVISAAPF-FLTPIIAKAAKAAGAHYFDL 99 (118)
T ss_dssp EECCTTCH-HHH--HHHTTTCSEEEECSCG-GGHHHHHHHHHHTTCEEECC
T ss_pred EEecCCCH-HHH--HHHHcCCCEEEECCCc-hhhHHHHHHHHHhCCCEEEe
Confidence 22233321 111 2456789999999954 34456667788888888863
No 37
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=96.51 E-value=0.003 Score=67.41 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.|++++|+|||+|.+|..-++.|...|. +++|++.+.- + .+.+.. + ...+.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA------~VtVvap~~~------------~---------~l~~l~-~-~~~i~ 78 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGA------AITVVAPTVS------------A---------EINEWE-A-KGQLR 78 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCC------CEEEECSSCC------------H---------HHHHHH-H-TTSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECCCCC------------H---------HHHHHH-H-cCCcE
Confidence 4778999999999999999999999997 9999986421 0 011111 1 12333
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
..... |.++.+.++|+||.|+|+.+....+...|. .++|+-
T Consensus 79 --~i~~~--------~~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VN 119 (223)
T 3dfz_A 79 --VKRKK--------VGEEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVN 119 (223)
T ss_dssp --EECSC--------CCGGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred --EEECC--------CCHhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 33222 223446789999999999999999999998 888854
No 38
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=96.36 E-value=0.02 Score=53.19 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=61.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
..+|+|+|+|++|..+++.|...|..+++++|.+. .|++. +. .+.+.+ ...++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~-------------------~~~~~----~~--~~~~~~--~~~d~ 57 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL-------------------AALAV----LN--RMGVAT--KQVDA 57 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH-------------------HHHHH----HH--TTTCEE--EECCT
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHH----HH--hCCCcE--EEecC
Confidence 35899999999999999999999977899988531 12222 22 233333 22222
Q ss_pred c-----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 199 T-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 199 ~-----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
. .+.+.++|+||.+. +......+.+.|.+.+ ++++.
T Consensus 58 ~~~~~~~~~~~~~d~vi~~~-~~~~~~~~~~~~~~~g--~~~~~ 98 (118)
T 3ic5_A 58 KDEAGLAKALGGFDAVISAA-PFFLTPIIAKAAKAAG--AHYFD 98 (118)
T ss_dssp TCHHHHHHHTTTCSEEEECS-CGGGHHHHHHHHHHTT--CEEEC
T ss_pred CCHHHHHHHHcCCCEEEECC-CchhhHHHHHHHHHhC--CCEEE
Confidence 2 13567899999987 4455577888999999 77665
No 39
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.031 Score=54.27 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=62.3
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+...+|+|+|+|.+|..+++.|...|. .++++|.+. .+++ .+.+. .+ .++..
T Consensus 4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~~----~~~~~--~~--~~~~g 55 (141)
T 3llv_A 4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKIE----LLEDE--GF--DAVIA 55 (141)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHH----HHHHT--TC--EEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHHH----HHHHC--CC--cEEEC
Confidence 345689999999999999999999997 788888631 1222 23332 22 22333
Q ss_pred ccc-hh-----hhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 197 ELT-KE-----KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 197 ~l~-~e-----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
+.+ ++ .+.++|+||.+..+.+....+...+++.+ .+.|.+
T Consensus 56 d~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~--~~~iia 101 (141)
T 3llv_A 56 DPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVS--DVYAIV 101 (141)
T ss_dssp CTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHC--CCCEEE
T ss_pred CCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhC--CceEEE
Confidence 332 22 24678999999888887778888888887 455544
No 40
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.98 E-value=0.025 Score=56.18 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=62.6
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCcccccc--CcCcccchHHHHHHHHHHHhCCCcEE
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIF--SEDDVGKNRALASIQKLQELNNAVAI 191 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~--~~~diGk~Kaea~~~~L~eLNp~V~V 191 (1104)
-+++...+|+|+|+|.+|..+++.|...|. .++++|.+.-....+...+-. -..|... . +.|
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~~d~~~--~----~~l--------- 77 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVVGDAAE--F----ETL--------- 77 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEESCTTS--H----HHH---------
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEEecCCC--H----HHH---------
Confidence 356778899999999999999999999997 899998754322222100000 0000000 0 001
Q ss_pred EEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHH-cCCCcceEEeeec
Q 001301 192 SALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHN-HQPPIAFIKSEVR 241 (1104)
Q Consensus 192 ~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~-~~~~ipfI~~~~~ 241 (1104)
....+.++|+||.+..+......+...++. .+ ...|.+.+.
T Consensus 78 -------~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~--~~~iv~~~~ 119 (155)
T 2g1u_A 78 -------KECGMEKADMVFAFTNDDSTNFFISMNARYMFN--VENVIARVY 119 (155)
T ss_dssp -------HTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSC--CSEEEEECS
T ss_pred -------HHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCC--CCeEEEEEC
Confidence 111256789999999887777777778887 44 444444333
No 41
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=95.90 E-value=0.017 Score=64.70 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=56.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|+||.|..++..|...|+++|+|++.+.- ...||+.+++.+.+..+ +.+.....
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~----------------~~~~a~~la~~~~~~~~-~~v~~~~~ 208 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDD----------------FFEKAVAFAKRVNENTD-CVVTVTDL 208 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST----------------HHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCc----------------hHHHHHHHHHHhhhccC-cceEEech
Confidence 56889999999999999999999999999999875310 02478888888776543 34443322
Q ss_pred c-c--chhhhcCCceEEEec
Q 001301 197 E-L--TKEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~-l--~~e~l~~~dvVV~~~ 213 (1104)
. + ..+.+.++|+||.|+
T Consensus 209 ~~l~~~~~~l~~~DiIINaT 228 (312)
T 3t4e_A 209 ADQHAFTEALASADILTNGT 228 (312)
T ss_dssp TCHHHHHHHHHHCSEEEECS
T ss_pred HhhhhhHhhccCceEEEECC
Confidence 1 1 023456677777665
No 42
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.02 Score=55.73 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=60.2
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
...+|+|+|+|.+|..+++.|...|. +++++|.|. .++ +.+++. .+.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~------~V~~id~~~-------------------~~~----~~~~~~--~~~-- 51 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK------KVLAVDKSK-------------------EKI----ELLEDE--GFD-- 51 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC------CEEEEESCH-------------------HHH----HHHHHT--TCE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEECCH-------------------HHH----HHHHHC--CCc--
Confidence 45689999999999999999999998 899998642 122 222221 222
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKP 642 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~p 642 (1104)
.+.....+ ...+...-..++|+||.++++......+...+...+.+
T Consensus 52 ~~~gd~~~--~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~ 97 (141)
T 3llv_A 52 AVIADPTD--ESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDV 97 (141)
T ss_dssp EEECCTTC--HHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCC--HHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCc
Confidence 23333322 11111112457999999999998888777777665543
No 43
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=95.87 E-value=0.021 Score=64.10 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=57.6
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|+||+|..++..|+..|+++|+|++.+.- -..||+.+++.+.+..+ +.+.+...
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~----------------~~~~a~~la~~~~~~~~-~~~~~~~~ 214 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDD----------------FYANAEKTVEKINSKTD-CKAQLFDI 214 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST----------------THHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCc----------------hHHHHHHHHHHhhhhcC-CceEEecc
Confidence 57889999999999999999999999999999975310 02478888888877654 44544432
Q ss_pred c-cc--hhhhcCCceEEEec
Q 001301 197 E-LT--KEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~-l~--~e~l~~~dvVV~~~ 213 (1104)
. .. .+.+.++|+||.|+
T Consensus 215 ~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 215 EDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp TCHHHHHHHHHTCSEEEECS
T ss_pred chHHHHHhhhcCCCEEEECc
Confidence 1 11 13456788888776
No 44
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.80 E-value=0.038 Score=53.16 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.++...+|+|+|+|++|..+++.|...|. .++++|.+.-.... +.+. ... ..
T Consensus 2 ~~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~-----------------------~~~~--~~~--~~ 53 (144)
T 2hmt_A 2 GRIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNA-----------------------YASY--ATH--AV 53 (144)
T ss_dssp ----CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHT-----------------------TTTT--CSE--EE
T ss_pred CCCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-----------------------HHHh--CCE--EE
Confidence 34667789999999999999999999997 68888864311111 1111 111 11
Q ss_pred eccc-ch----h-hhcCCceEEEecCC-HhHhhhHHHHHHHcC
Q 001301 195 TTEL-TK----E-KLSDFQAVVFTDIS-LEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 195 ~~~l-~~----e-~l~~~dvVV~~~~~-~~~~~~ln~~c~~~~ 230 (1104)
..+. +. + .+.++|+||.+..+ .+....+...+++.+
T Consensus 54 ~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~ 96 (144)
T 2hmt_A 54 IANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELD 96 (144)
T ss_dssp ECCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcC
Confidence 1111 11 1 25678999998875 355566778888888
No 45
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.74 E-value=0.019 Score=56.97 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=57.1
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC
Q 001301 511 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH 590 (1104)
Q Consensus 511 q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~ 590 (1104)
-+++.+.+|+|+|+|.+|..+++.|...|. +++++|.+.-....+.++. .
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~------~V~vid~~~~~~~~~~~~~------------------------g 63 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH------SVVVVDKNEYAFHRLNSEF------------------------S 63 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTC------EEEEEESCGGGGGGSCTTC------------------------C
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHHHHHHHHhcC------------------------C
Confidence 456677899999999999999999999997 8999987642222221000 1
Q ss_pred cEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc
Q 001301 591 LNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 638 (1104)
Q Consensus 591 ~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~ 638 (1104)
.. .+...... ...+...-..++|+||.|+.+......+...+..
T Consensus 64 ~~--~~~~d~~~--~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~ 107 (155)
T 2g1u_A 64 GF--TVVGDAAE--FETLKECGMEKADMVFAFTNDDSTNFFISMNARY 107 (155)
T ss_dssp SE--EEESCTTS--HHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHH
T ss_pred Cc--EEEecCCC--HHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHH
Confidence 11 11111110 0011111146799999999998877776666554
No 46
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.47 E-value=0.024 Score=54.63 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++...+|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~------~v~~~d~~ 38 (144)
T 2hmt_A 3 RIKNKQFAVIGLGRFGGSIVKELHRMGH------EVLAVDIN 38 (144)
T ss_dssp ---CCSEEEECCSHHHHHHHHHHHHTTC------CCEEEESC
T ss_pred CCcCCcEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3566789999999999999999999997 78888865
No 47
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=95.47 E-value=0.029 Score=61.54 Aligned_cols=73 Identities=29% Similarity=0.311 Sum_probs=59.0
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
++.++|+|+|+||.+..++..|...|+++|+|++.+ ..|++.+++.+....+...+...
T Consensus 123 ~~~~~~lilGaGGaarai~~aL~~~g~~~i~i~nRt-------------------~~ra~~la~~~~~~~~~~~~~~~-- 181 (269)
T 3tum_A 123 PAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPS-------------------TARMGAVCELLGNGFPGLTVSTQ-- 181 (269)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC-------------------HHHHHHHHHHHHHHCTTCEEESC--
T ss_pred cccCeEEEEecHHHHHHHHHHHHHhCCCeEEEeCCC-------------------HHHHHHHHHHHhccCCcceehhh--
Confidence 467899999999999999999999999999998642 34899999999988887665432
Q ss_pred ccchhhhcCCceEEEec
Q 001301 197 ELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~ 213 (1104)
.+.+.++|+||.|+
T Consensus 182 ---~~~~~~~dliiNaT 195 (269)
T 3tum_A 182 ---FSGLEDFDLVANAS 195 (269)
T ss_dssp ---CSCSTTCSEEEECS
T ss_pred ---hhhhhcccccccCC
Confidence 22356789988876
No 48
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.42 E-value=0.021 Score=56.55 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=63.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC-CCcEEEEee
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN-p~V~V~~~~ 195 (1104)
+.+.+|+|+|+|.+|..+++.|...|. .++++|.+.- .+++ .+.+.. ..+.+ +.
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~----~~~~~~~~~~~~--i~ 55 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIK----QLEQRLGDNADV--IP 55 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHH----HHHHHHCTTCEE--EE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHH----HHHHhhcCCCeE--EE
Confidence 346789999999999999999999996 6888886310 1222 232222 23333 33
Q ss_pred cccc------hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 196 TELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 196 ~~l~------~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
.+.+ ...+.++|+||.+..+.+....+...+++.++ .+.|.+
T Consensus 56 gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~-~~~ii~ 103 (153)
T 1id1_A 56 GDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSS-DVKTVL 103 (153)
T ss_dssp SCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTS-SSCEEE
T ss_pred cCCCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHHCC-CCEEEE
Confidence 3322 22367899999999887877888888888742 344444
No 49
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=95.35 E-value=0.031 Score=61.30 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=57.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+++++++|+|+||.+..++-.|+..|+ .+|+|++.+ ..|++.+++.+....|.+.+
T Consensus 123 ~~~~~~lilGaGGaarai~~aL~~~g~-----~~i~i~nRt-------------------~~ra~~la~~~~~~~~~~~~ 178 (269)
T 3tum_A 123 PAGKRALVIGCGGVGSAIAYALAEAGI-----ASITLCDPS-------------------TARMGAVCELLGNGFPGLTV 178 (269)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-----SEEEEECSC-------------------HHHHHHHHHHHHHHCTTCEE
T ss_pred cccCeEEEEecHHHHHHHHHHHHHhCC-----CeEEEeCCC-------------------HHHHHHHHHHHhccCCccee
Confidence 467899999999999999999999999 899998522 24788888888888877665
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
..... -.+++|+||||+
T Consensus 179 ~~~~~-------------~~~~~dliiNaT 195 (269)
T 3tum_A 179 STQFS-------------GLEDFDLVANAS 195 (269)
T ss_dssp ESCCS-------------CSTTCSEEEECS
T ss_pred hhhhh-------------hhhcccccccCC
Confidence 43211 135789999997
No 50
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=95.23 E-value=0.024 Score=54.48 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=53.7
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.+|+|+|+|.+|..+++.|...|. +++++|.+.- +. +.+.+.. .+. .+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~------~v~~~d~~~~-------------------~~----~~~~~~~-~~~--~~ 52 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH------DIVLIDIDKD-------------------IC----KKASAEI-DAL--VI 52 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------EEEEEESCHH-------------------HH----HHHHHHC-SSE--EE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HH----HHHHHhc-CcE--EE
Confidence 689999999999999999999987 7899885321 11 1122111 222 22
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
...... ...+......++|+||.|+.+......+...+...
T Consensus 53 ~~d~~~--~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~ 93 (140)
T 1lss_A 53 NGDCTK--IKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSY 93 (140)
T ss_dssp ESCTTS--HHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHT
T ss_pred EcCCCC--HHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHc
Confidence 222211 11111122468999999999876666555555443
No 51
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=95.17 E-value=0.03 Score=62.71 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=57.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+++++++|+|+||+|..++..|+..|+ .+|+|++.+. -...|++.+++.+....+ +.+
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~Ga-----~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~ 209 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDGV-----KEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKA 209 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTC-----SEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEE
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCCC-----CEEEEEECCC----------------chHHHHHHHHHHhhhhcC-Cce
Confidence 578899999999999999999999999 8999986331 002467777777776553 444
Q ss_pred eeecccCCccccccchhhhhccCCEEEEcc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
.+.. +.+ .+.+ .+...++|+||+|+
T Consensus 210 ~~~~--~~~-~~~l--~~~l~~aDiIINaT 234 (315)
T 3tnl_A 210 QLFD--IED-HEQL--RKEIAESVIFTNAT 234 (315)
T ss_dssp EEEE--TTC-HHHH--HHHHHTCSEEEECS
T ss_pred EEec--cch-HHHH--HhhhcCCCEEEECc
Confidence 4332 111 0111 13456899999997
No 52
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=95.02 E-value=0.08 Score=50.66 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=55.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc-
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL- 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l- 198 (1104)
.+|+|+|+|.+|..+++.|...|. +++++|.+. .+++ .+.+.. .+. .+..+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~-------------------~~~~----~~~~~~-~~~--~~~~d~~ 57 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICK----KASAEI-DAL--VINGDCT 57 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HHHHHC-SSE--EEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHH----HHHHhc-CcE--EEEcCCC
Confidence 589999999999999999999995 688888522 1222 222211 122 222221
Q ss_pred c-----hhhhcCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 199 T-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 199 ~-----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
+ ...+.++|+||.+..+......+...++..+
T Consensus 58 ~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~ 94 (140)
T 1lss_A 58 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYG 94 (140)
T ss_dssp SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcC
Confidence 1 1235689999999877666666777788877
No 53
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.99 E-value=0.02 Score=62.83 Aligned_cols=111 Identities=20% Similarity=0.317 Sum_probs=66.7
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCccc--ccCcccCccccchHHHHHHHHHH-hCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSR--QFLFRDWNIGQAKSTVAASAAAL-INP 589 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnR--QfLf~~~diG~~Ka~vaa~~l~~-~np 589 (1104)
.|++++|+|||+|.+|...++.|...|. +++|+|.+.-+. +.. +-+.. +-+. ++. ....++ +++
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga------~VtViap~~~~~--l~~~~~~l~~--~~~~-~~~--~~~~~~~~~~ 76 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGC------KLTLVSPDLHKS--IIPKFGKFIQ--NKDQ-PDY--REDAKRFINP 76 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTC------EEEEEEEEECTT--HHHHHCGGGC----------------CEEECT
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCC------EEEEEcCCCCcc--hhHHHHHHHh--cccc-ccc--cchhhccccc
Confidence 3578899999999999999999999997 899999754211 100 00000 0000 000 000000 111
Q ss_pred C-----cEE-eeecccCCccccccchhhhhc------cCCEEEEccCCHHHHHHHhhccccc---ccceE
Q 001301 590 H-----LNT-EALQIRANPETENVFNDTFWE------NLNVVVNALDNVNARLYIDQRCLYF---QKPLL 644 (1104)
Q Consensus 590 ~-----~~i-~~~~~~v~~~~~~~~~~~f~~------~~DvVi~alDn~~aR~~i~~~c~~~---~~pli 644 (1104)
. -+| +.+...+ ....+. ++|+||.|+|+.+....+...|... ++|+-
T Consensus 77 ~~~~~~g~i~~~i~~~~--------~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VN 138 (274)
T 1kyq_A 77 NWDPTKNEIYEYIRSDF--------KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVN 138 (274)
T ss_dssp TCCTTSCCCSEEECSSC--------CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred ccccccCCeeEEEcCCC--------CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEE
Confidence 1 122 2222222 223344 8999999999999999999999998 88773
No 54
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=94.92 E-value=0.03 Score=59.17 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 510 LQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 510 ~q~kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
...+|++++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~------~V~~~~R 53 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH------EPVAMVR 53 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCC------eEEEEEC
Confidence 356788999999996 9999999999999997 7888864
No 55
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.045 Score=62.45 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=61.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++.||+|+|||.+|..+++.|+.. ..++++|.+. .+ +.+..+.+.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~-------------------~~-------~~~~~~~~~-- 59 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNN-------------------EN-------LEKVKEFAT-- 59 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCH-------------------HH-------HHHHTTTSE--
T ss_pred CccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCH-------------------HH-------HHHHhccCC--
Confidence 456899999999999999998642 4678776331 11 112222222
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
.+...+.+ .+.+ .++++++|+||+|+...- -..+.+.|.+.++.+++..
T Consensus 60 ~~~~d~~d-~~~l--~~~~~~~DvVi~~~p~~~-~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 60 PLKVDASN-FDKL--VEVMKEFELVIGALPGFL-GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp EEECCTTC-HHHH--HHHHTTCSEEEECCCGGG-HHHHHHHHHHHTCEEEECC
T ss_pred cEEEecCC-HHHH--HHHHhCCCEEEEecCCcc-cchHHHHHHhcCcceEeee
Confidence 22222222 1222 356789999999997653 4568889999999999853
No 56
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=94.74 E-value=0.021 Score=65.23 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=58.1
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee-c
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT-T 196 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~-~ 196 (1104)
++.||+|+|+|.+|..+++.|... ..++++|.+ .. ++.++.+.+.....+ .
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~-------------------~~-------~~~~~~~~~~~~~~d~~ 66 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN-------------------NE-------NLEKVKEFATPLKVDAS 66 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC-------------------HH-------HHHHHTTTSEEEECCTT
T ss_pred CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC-------------------HH-------HHHHHhccCCcEEEecC
Confidence 445799999999999999998643 567776631 11 223333333221111 1
Q ss_pred cc--chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 197 EL--TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 197 ~l--~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
+. -.+.++++|+||.|..+. .-..+.+.|.+.| +.++..
T Consensus 67 d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g--~~yvD~ 107 (365)
T 3abi_A 67 NFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSK--VDMVDV 107 (365)
T ss_dssp CHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHT--CEEEEC
T ss_pred CHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcC--cceEee
Confidence 11 124678999999987544 4567889999999 888774
No 57
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=94.73 E-value=0.047 Score=59.90 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=52.4
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.+.+++|+|+|+||.|..++..|...|+++|++++.+ ..|++.+++.+.. ..+.+..
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~----~~~~~~~ 173 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD-------------------MAKALALRNELDH----SRLRISR 173 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHCC----TTEEEEC
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhcc----CCeeEee
Confidence 3678899999999999999999999999999998742 2367777666644 1233322
Q ss_pred c-ccchhhhcCCceEEEecC
Q 001301 196 T-ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~-~l~~e~l~~~dvVV~~~~ 214 (1104)
. ++.. .++|+||.|+.
T Consensus 174 ~~~l~~---~~~DivInaTp 190 (272)
T 3pwz_A 174 YEALEG---QSFDIVVNATS 190 (272)
T ss_dssp SGGGTT---CCCSEEEECSS
T ss_pred HHHhcc---cCCCEEEECCC
Confidence 1 1111 67899888863
No 58
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=94.66 E-value=0.025 Score=66.46 Aligned_cols=102 Identities=12% Similarity=0.185 Sum_probs=65.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcc-cccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMG-VSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~G-v~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
..||+|||+|+||+.++..|++.+ + .-..|+++|.|.... ++ .+.+ .+++.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv---~~~~I~vaD~~~~~~------------~~--------~~~~-----g~~~~ 64 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDI---KPSQVTIIAAEGTKV------------DV--------AQQY-----GVSFK 64 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCC---CGGGEEEEESSCCSC------------CH--------HHHH-----TCEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCC---ceeEEEEeccchhhh------------hH--------Hhhc-----CCcee
Confidence 468999999999999999999975 3 015899998654311 00 1111 23333
Q ss_pred eecccCCcccc-ccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccC
Q 001301 595 ALQIRANPETE-NVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 649 (1104)
Q Consensus 595 ~~~~~v~~~~~-~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~ 649 (1104)
. ..++.++. ... ..++++.|+|||+...... ..+-+.|.+.++-+|+....
T Consensus 65 ~--~~Vdadnv~~~l-~aLl~~~DvVIN~s~~~~~-l~Im~acleaGv~YlDTa~E 116 (480)
T 2ph5_A 65 L--QQITPQNYLEVI-GSTLEENDFLIDVSIGISS-LALIILCNQKGALYINAATE 116 (480)
T ss_dssp E--CCCCTTTHHHHT-GGGCCTTCEEEECCSSSCH-HHHHHHHHHHTCEEEESSCC
T ss_pred E--EeccchhHHHHH-HHHhcCCCEEEECCccccC-HHHHHHHHHcCCCEEECCCC
Confidence 3 33433321 111 2344556999998876655 55677999999999987653
No 59
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=94.60 E-value=0.054 Score=62.85 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=67.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
++|+|+|+|++|..+++.|+..|-. ...++++|.+ ..|++.+++.+....+ .++...
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~---~~~V~v~~r~-------------------~~~~~~la~~l~~~~~-~~~~~~ 58 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREV---FSHITLASRT-------------------LSKCQEIAQSIKAKGY-GEIDIT 58 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTT---CCEEEEEESC-------------------HHHHHHHHHHHHHTTC-CCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC---ceEEEEEECC-------------------HHHHHHHHHHhhhhcC-CceEEE
Confidence 4899999999999999999988720 0277887633 2466666666654321 123344
Q ss_pred cccCCccccccchhhhhcc--CCEEEEccCCHHHHHHHhhcccccccceEec
Q 001301 597 QIRANPETENVFNDTFWEN--LNVVVNALDNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~--~DvVi~alDn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
...+.+. +.+ .+++++ .|+||+|+.... ...+...|...++.+++.
T Consensus 59 ~~D~~d~-~~l--~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~ 106 (405)
T 4ina_A 59 TVDADSI-EEL--VALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDT 106 (405)
T ss_dssp ECCTTCH-HHH--HHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEEES
T ss_pred EecCCCH-HHH--HHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEEEe
Confidence 3344321 111 244555 899999987544 456677899999999974
No 60
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=94.57 E-value=0.056 Score=60.51 Aligned_cols=84 Identities=10% Similarity=0.130 Sum_probs=56.5
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+.+++++|+|+||.|..++..|+..|+ .+|+|++.+ .-...|++.+++.+....+ ..+
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~-----~~v~v~nRt----------------~~~~~~a~~la~~~~~~~~-~~v 203 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGI-----KEIKLFNRK----------------DDFFEKAVAFAKRVNENTD-CVV 203 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-----SEEEEEECS----------------STHHHHHHHHHHHHHHHSS-CEE
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCC-----CEEEEEECC----------------CchHHHHHHHHHHhhhccC-cce
Confidence 567899999999999999999999999 899998532 0013467777777766543 334
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
..+. +.+ .+. + .+...++|+||||+-
T Consensus 204 ~~~~--~~~-l~~-~-~~~l~~~DiIINaTp 229 (312)
T 3t4e_A 204 TVTD--LAD-QHA-F-TEALASADILTNGTK 229 (312)
T ss_dssp EEEE--TTC-HHH-H-HHHHHHCSEEEECSS
T ss_pred EEec--hHh-hhh-h-HhhccCceEEEECCc
Confidence 3332 111 000 0 234568999999973
No 61
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=94.50 E-value=0.081 Score=59.50 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=54.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEE
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAI 191 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V 191 (1104)
+|+..+|.|+|+|.+|..++..|+..|.+.++|+|-+. .|++..+..|+..+ ..++|
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v 64 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKF 64 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCE
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEE
Confidence 35678999999999999999999999988899998532 23443344455443 24556
Q ss_pred EEeecccchhhhcCCceEEEecC
Q 001301 192 SALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 192 ~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
....+ .+-+++.|+||.+..
T Consensus 65 ~~t~d---~~a~~~aDiVIiaag 84 (324)
T 3gvi_A 65 TGAND---YAAIEGADVVIVTAG 84 (324)
T ss_dssp EEESS---GGGGTTCSEEEECCS
T ss_pred EEeCC---HHHHCCCCEEEEccC
Confidence 54332 256889999999853
No 62
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=94.37 E-value=0.055 Score=63.81 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=66.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
|++++|+|||.|.+|...++.|...|. +++++|.+.-+ .+.+ +.+ ...+
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga------~V~vi~~~~~~---------------------~~~~-l~~-~~~i-- 58 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGA------RLTVNALTFIP---------------------QFTV-WAN-EGML-- 58 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTB------EEEEEESSCCH---------------------HHHH-HHT-TTSC--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC------EEEEEcCCCCH---------------------HHHH-HHh-cCCE--
Confidence 567899999999999999999999997 89999964211 0111 111 1223
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccce
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 643 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pl 643 (1104)
+.+...+. ...+.++|+||.|+|+......+-..|...++|+
T Consensus 59 ~~~~~~~~--------~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~v 100 (457)
T 1pjq_A 59 TLVEGPFD--------ETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC 100 (457)
T ss_dssp EEEESSCC--------GGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred EEEECCCC--------ccccCCccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence 33333222 3345689999999999988888999999999996
No 63
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=94.35 E-value=0.039 Score=54.00 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=50.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
....+|+|+|+|++|..+++.|...|+. ++++|.+ ..|++..++.+. +.+....
T Consensus 19 ~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~-------------------~~~~~~~a~~~~-----~~~~~~~- 72 (144)
T 3oj0_A 19 NGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN-------------------IDHVRAFAEKYE-----YEYVLIN- 72 (144)
T ss_dssp HCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC-------------------HHHHHHHHHHHT-----CEEEECS-
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC-------------------HHHHHHHHHHhC-----CceEeec-
Confidence 3488999999999999999999999998 9998852 124444444332 2322211
Q ss_pred ccchhhhcCCceEEEecCC
Q 001301 197 ELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~ 215 (1104)
. ..+.+.++|+||.|...
T Consensus 73 ~-~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 73 D-IDSLIKNNDVIITATSS 90 (144)
T ss_dssp C-HHHHHHTCSEEEECSCC
T ss_pred C-HHHHhcCCCEEEEeCCC
Confidence 1 23467889999998754
No 64
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=94.35 E-value=0.063 Score=59.18 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=53.6
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+.+++|+|+|+||.|..++..|...|+++|++++.+ ..|++.+++.+.... .+.+..
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~---~~~~~~- 180 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG---EVKAQA- 180 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC---CeeEee-
Confidence 578899999999999999999999999999998752 237777777766542 233322
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
+. +...++|+||.|+.
T Consensus 181 -~~-~l~~~aDiIInaTp 196 (281)
T 3o8q_A 181 -FE-QLKQSYDVIINSTS 196 (281)
T ss_dssp -GG-GCCSCEEEEEECSC
T ss_pred -HH-HhcCCCCEEEEcCc
Confidence 11 12267899998874
No 65
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=94.32 E-value=0.052 Score=59.57 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=51.1
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+ ..|++.+++.+.. ..+.+
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~-----~~v~i~~R~-------------------~~~a~~la~~~~~--~~~~~ 171 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGP-----SELVIANRD-------------------MAKALALRNELDH--SRLRI 171 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCC-----SEEEEECSC-------------------HHHHHHHHHHHCC--TTEEE
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC-----CEEEEEeCC-------------------HHHHHHHHHHhcc--CCeeE
Confidence 567899999999999999999999999 899998532 2366666666543 12222
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
..+. ++ . . .++|+||+|+-
T Consensus 172 ~~~~--------~l-~-~--~~~DivInaTp 190 (272)
T 3pwz_A 172 SRYE--------AL-E-G--QSFDIVVNATS 190 (272)
T ss_dssp ECSG--------GG-T-T--CCCSEEEECSS
T ss_pred eeHH--------Hh-c-c--cCCCEEEECCC
Confidence 2211 11 0 1 57999999974
No 66
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=94.28 E-value=0.13 Score=59.72 Aligned_cols=95 Identities=15% Similarity=0.282 Sum_probs=66.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhC-C-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 120 SNILISGMQGLGAEIAKNLILAG-V-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaG-V-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.+|+|+|+|++|..+++.|+..| + ..+++.|.+ ..|++.+++.+....+ .++.....+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~-------------------~~~~~~la~~l~~~~~-~~~~~~~~D 61 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT-------------------LSKCQEIAQSIKAKGY-GEIDITTVD 61 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC-------------------HHHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC-------------------HHHHHHHHHHhhhhcC-CceEEEEec
Confidence 48999999999999999999988 4 689998752 2366776766665431 123333333
Q ss_pred cch-----hhhcC--CceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 198 LTK-----EKLSD--FQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 198 l~~-----e~l~~--~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
+++ +.+++ .|+||.+..+.. ...+.+.|.+.+ +.++.
T Consensus 62 ~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g--~~vvD 105 (405)
T 4ina_A 62 ADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTG--VPYLD 105 (405)
T ss_dssp TTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHT--CCEEE
T ss_pred CCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhC--CCEEE
Confidence 321 34555 899998875433 456778999999 77775
No 67
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=94.27 E-value=0.17 Score=49.94 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=60.8
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.+.+|+|+|+|.+|..+++.|...|. .++++|.|.- .+++.+++. ....+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~------~V~vid~~~~------------------~~~~~~~~~---~~~~~~-- 52 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQ------NVTVISNLPE------------------DDIKQLEQR---LGDNAD-- 52 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC------CEEEEECCCH------------------HHHHHHHHH---HCTTCE--
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC------CEEEEECCCh------------------HHHHHHHHh---hcCCCe--
Confidence 35689999999999999999999997 8999986421 011111111 112233
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 639 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 639 (1104)
.+.....+ ...+...-++++|+||.|+++......+...+...
T Consensus 53 ~i~gd~~~--~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~ 95 (153)
T 1id1_A 53 VIPGDSND--SSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM 95 (153)
T ss_dssp EEESCTTS--HHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEEcCCCC--HHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence 33333322 12232333678999999999988887777777664
No 68
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.21 E-value=0.11 Score=52.70 Aligned_cols=87 Identities=10% Similarity=0.021 Sum_probs=57.9
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILISGMQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
+.+.+|+|+|+|.+|..+++.|... |. .++++|.+. .|++ .+++.. +.+ ..
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~~----~~~~~g--~~~--~~ 88 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAAQ----QHRSEG--RNV--IS 88 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHHH----HHHHTT--CCE--EE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHHH----HHHHCC--CCE--EE
Confidence 4567999999999999999999999 97 688888532 1222 233332 222 11
Q ss_pred ccc-ch----hh--hcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 196 TEL-TK----EK--LSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 196 ~~l-~~----e~--l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
.+. ++ +. +.++|+||.+..+......+-..+++.++
T Consensus 89 gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~ 131 (183)
T 3c85_A 89 GDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNY 131 (183)
T ss_dssp CCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCC
Confidence 111 11 22 56889999988776666666667777763
No 69
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=94.21 E-value=0.05 Score=57.11 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.+|+|+|+|.+|..+++.|...|. .++++|.|.= +++ .+.+. .++. .+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~------~v~vid~~~~-------------------~~~----~l~~~-~~~~--~i 48 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY------GVVIINKDRE-------------------LCE----EFAKK-LKAT--II 48 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC------CEEEEESCHH-------------------HHH----HHHHH-SSSE--EE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HHH----HHHHH-cCCe--EE
Confidence 479999999999999999999997 8999985421 111 11111 1222 33
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 638 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~ 638 (1104)
...... ...+...-.+++|+||.|+++......+...+..
T Consensus 49 ~gd~~~--~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~ 88 (218)
T 3l4b_C 49 HGDGSH--KEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMK 88 (218)
T ss_dssp ESCTTS--HHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred EcCCCC--HHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHH
Confidence 333322 1222233357899999999999888777776654
No 70
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=94.18 E-value=0.042 Score=61.00 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+..++|+|+|+||+|..++..|...|+++|+++|.
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR 173 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANR 173 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 56889999999999999999999999999999875
No 71
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=94.06 E-value=0.18 Score=49.01 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=56.6
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+.+|+|+|+|.+|..+++.|...|. .++++|.+. .++ +.+++. .+.+ +..+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~----~~~~~~--g~~~--i~gd~ 58 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRV----DELRER--GVRA--VLGNA 58 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHH----HHHHHT--TCEE--EESCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHH----HHHHHc--CCCE--EECCC
Confidence 4589999999999999999999997 788888632 122 233332 2332 33332
Q ss_pred -chh-----hhcCCceEEEecCCHhHhhhHHHHHHHcC
Q 001301 199 -TKE-----KLSDFQAVVFTDISLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 199 -~~e-----~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 230 (1104)
+++ -+.++|+||.+..+......+...+++.+
T Consensus 59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~ 96 (140)
T 3fwz_A 59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKN 96 (140)
T ss_dssp TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHC
Confidence 222 35688999999887666655666777765
No 72
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=93.97 E-value=0.035 Score=54.39 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 510 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 510 ~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
...+...++|+|||+|++|..+++.|...|+ . ++++|.
T Consensus 15 ~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-----~-v~v~~r 52 (144)
T 3oj0_A 15 IVRKNGGNKILLVGNGMLASEIAPYFSYPQY-----K-VTVAGR 52 (144)
T ss_dssp HHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-----E-EEEEES
T ss_pred HHHhccCCEEEEECCCHHHHHHHHHHHhCCC-----E-EEEEcC
Confidence 3344458999999999999999999999888 5 888874
No 73
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=93.77 E-value=0.053 Score=62.06 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=58.6
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee-
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT- 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~- 195 (1104)
=++++|+|+|+|++|..++++|+.. ..+++.|.+. .|++.+++ .......+
T Consensus 14 ~~~~~v~IiGaG~iG~~ia~~L~~~--~~V~V~~R~~-------------------~~a~~la~-------~~~~~~~d~ 65 (365)
T 2z2v_A 14 GRHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN-------------------ENLEKVKE-------FATPLKVDA 65 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH-------------------HHHHHHTT-------TSEEEECCT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHcC--CeEEEEECCH-------------------HHHHHHHh-------hCCeEEEec
Confidence 3678999999999999999999988 6788887521 23333221 12211111
Q ss_pred ccc--chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 196 TEL--TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 196 ~~l--~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
.+. -.+.++++|+||.|. +......+.+.|-+.| +.++..
T Consensus 66 ~~~~~l~~ll~~~DvVIn~~-P~~~~~~v~~a~l~~G--~~~vD~ 107 (365)
T 2z2v_A 66 SNFDKLVEVMKEFELVIGAL-PGFLGFKSIKAAIKSK--VDMVDV 107 (365)
T ss_dssp TCHHHHHHHHTTCSCEEECC-CHHHHHHHHHHHHHTT--CCEEEC
T ss_pred CCHHHHHHHHhCCCEEEECC-ChhhhHHHHHHHHHhC--CeEEEc
Confidence 111 124678899999985 4333445778899999 777763
No 74
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=93.76 E-value=0.074 Score=58.61 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=52.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+ ..|++.+++.+.... .+.+
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G~-----~~v~v~~R~-------------------~~~a~~la~~~~~~~-~~~~ 178 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQP-----ASITVTNRT-------------------FAKAEQLAELVAAYG-EVKA 178 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTCC-----SEEEEEESS-------------------HHHHHHHHHHHGGGS-CEEE
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcCC-----CeEEEEECC-------------------HHHHHHHHHHhhccC-CeeE
Confidence 568899999999999999999999999 899998632 246666676665432 2222
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
..+. +.-.++|+||+|+-
T Consensus 179 ~~~~-------------~l~~~aDiIInaTp 196 (281)
T 3o8q_A 179 QAFE-------------QLKQSYDVIINSTS 196 (281)
T ss_dssp EEGG-------------GCCSCEEEEEECSC
T ss_pred eeHH-------------HhcCCCCEEEEcCc
Confidence 2211 11157899999985
No 75
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=93.64 E-value=0.17 Score=53.29 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEE
Q 001301 113 TMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 191 (1104)
Q Consensus 113 ~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V 191 (1104)
.+.+|++.+|+|.|+ |++|.++++.|+..|. +|++++.+.- +.+ .+.+. .+ .
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~-------------------~~~----~~~~~--~~-~ 67 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEE-------------------QGP----ELRER--GA-S 67 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGG-------------------GHH----HHHHT--TC-S
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChH-------------------HHH----HHHhC--CC-c
Confidence 356788999999997 7899999999999996 7777764321 111 12221 22 0
Q ss_pred EEeecccc---hhhhcCCceEEEecC-------------CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 192 SALTTELT---KEKLSDFQAVVFTDI-------------SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 192 ~~~~~~l~---~e~l~~~dvVV~~~~-------------~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
+.+..+++ .+.+.+.|+||.+.. +......+-+.|++.+. ..+|..+++|
T Consensus 68 ~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~~ 133 (236)
T 3e8x_A 68 DIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGI-KRFIMVSSVG 133 (236)
T ss_dssp EEEECCTTSCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTC-CEEEEECCTT
T ss_pred eEEEcccHHHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCC-CEEEEEecCC
Confidence 33344443 235678899997654 12223456678887772 2567666644
No 76
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=93.61 E-value=0.14 Score=53.67 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=61.1
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 199 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~- 199 (1104)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+++ .+.+.. .+. ++..+.+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~----~l~~~~-~~~--~i~gd~~~ 54 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCE----EFAKKL-KAT--IIHGDGSH 54 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHH----HHHHHS-SSE--EEESCTTS
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHH----HHHHHc-CCe--EEEcCCCC
Confidence 69999999999999999999997 688888532 1222 222211 222 2333322
Q ss_pred -----hhhhcCCceEEEecCCHhHhhhHHHHHHH-cCCCcceEEeeec
Q 001301 200 -----KEKLSDFQAVVFTDISLEKAVEFDDYCHN-HQPPIAFIKSEVR 241 (1104)
Q Consensus 200 -----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~-~~~~ipfI~~~~~ 241 (1104)
...+.++|+||++..+......+...+++ ++ .+-|.+.+.
T Consensus 55 ~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~--~~~iia~~~ 100 (218)
T 3l4b_C 55 KEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFG--VKRVVSLVN 100 (218)
T ss_dssp HHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSC--CCEEEECCC
T ss_pred HHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 22467899999999887777778888887 44 445554433
No 77
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=93.61 E-value=0.4 Score=53.23 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=51.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEEEe
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISAL 194 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~~~ 194 (1104)
.+|.|||+|.+|+.++..|+..|+ ..++++|.+ ..|++..+..+...+ ..+.+.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~-- 60 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN-------------------EAKVKADQIDFQDAMANLEAHGNIV-- 60 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSSSCCEEE--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC-------------------HHHHHHHHHHHHhhhhhcCCCeEEE--
Confidence 479999999999999999999996 789998853 124444444444332 223443
Q ss_pred ecccchhhhcCCceEEEecCCH
Q 001301 195 TTELTKEKLSDFQAVVFTDISL 216 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~~ 216 (1104)
..+. +.+.+.|+||.+....
T Consensus 61 ~~d~--~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 61 INDW--AALADADVVISTLGNI 80 (309)
T ss_dssp ESCG--GGGTTCSEEEECCSCG
T ss_pred eCCH--HHhCCCCEEEEecCCc
Confidence 2333 4678999999988653
No 78
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=93.56 E-value=0.052 Score=60.30 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+..++|+|+|+|++|..++..|+..|+ .+|+|+|.+
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~-----~~V~v~nR~ 174 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAA-----ERIDMANRT 174 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECSS
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 567899999999999999999999999 899998643
No 79
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=93.45 E-value=0.15 Score=57.22 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=54.1
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEE
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAIS 192 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~ 192 (1104)
|...+|.|+|+|.+|+.+|..|+..|++.|+|+|.+. .|++..+..|+... ..++|.
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~ 63 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVR 63 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEE
Confidence 4567999999999999999999999988899998532 23443344454432 345665
Q ss_pred EeecccchhhhcCCceEEEecC
Q 001301 193 ALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
.... .+-+++.|+||.+..
T Consensus 64 ~t~d---~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 64 GTND---YKDLENSDVVIVTAG 82 (321)
T ss_dssp EESC---GGGGTTCSEEEECCS
T ss_pred EcCC---HHHHCCCCEEEEcCC
Confidence 4322 357889999999853
No 80
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=93.42 E-value=0.36 Score=53.83 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=51.3
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH----hCCCcEEEEeec
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE----LNNAVAISALTT 196 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e----LNp~V~V~~~~~ 196 (1104)
+|.|+|+|.+|..++..|+..|++.|.|+|-+. .|++..+..|.+ ++..+++....+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~d 61 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP-------------------GKPQGEALDLAHAAAELGVDIRISGSNS 61 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh-------------------hhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence 689999999999999999999996699998531 233333334443 455667766433
Q ss_pred ccchhhhcCCceEEEec
Q 001301 197 ELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~ 213 (1104)
. +-+++.|+||.+.
T Consensus 62 -~--~a~~~aD~Vi~~a 75 (308)
T 2d4a_B 62 -Y--EDMRGSDIVLVTA 75 (308)
T ss_dssp -G--GGGTTCSEEEECC
T ss_pred -H--HHhCCCCEEEEeC
Confidence 2 4588999999984
No 81
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.26 Score=54.15 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=63.1
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCc--ceEEecCCcccccCcccccCcccCccccchHHHHHHHHH
Q 001301 509 KLQKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQG--KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 585 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g--~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~ 585 (1104)
.....|.+++++|.| .||||.++++.|+..|. + +++++|.+ ..+.+.+++.+.
T Consensus 26 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~-----~~~~V~~~~r~-------------------~~~~~~~~~~l~ 81 (287)
T 3rku_A 26 KAAERLAKKTVLITGASAGIGKATALEYLEASN-----GDMKLILAARR-------------------LEKLEELKKTID 81 (287)
T ss_dssp HHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHT-----TCSEEEEEESC-------------------HHHHHHHHHHHH
T ss_pred cchhhcCCCEEEEecCCChHHHHHHHHHHHcCC-----CCceEEEEECC-------------------HHHHHHHHHHHH
Confidence 345678999999998 68999999999999987 4 77777632 235566777777
Q ss_pred HhCCCcEEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 586 LINPHLNTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
...|..++..+..++.+... ..+. .+-+...|++|++.
T Consensus 82 ~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 123 (287)
T 3rku_A 82 QEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA 123 (287)
T ss_dssp HHCTTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred hhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 77778888888877765332 1111 01234677777663
No 82
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=93.34 E-value=0.38 Score=53.59 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC---cE
Q 001301 115 RRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VA 190 (1104)
Q Consensus 115 ~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~---V~ 190 (1104)
..+...+|||.|+ |.+|..+++.|...|. +|+.++...-. .......+..+.+. -.
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~ 80 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG-------------------HQYNLDEVKTLVSTEQWSR 80 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC-------------------CHHHHHHHHHTSCHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC-------------------chhhhhhhhhccccccCCc
Confidence 3567889999996 6699999999999995 67777642210 01112233332210 23
Q ss_pred EEEeecccch-----hhhcCCceEEEecCC-----------------HhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 191 ISALTTELTK-----EKLSDFQAVVFTDIS-----------------LEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 191 V~~~~~~l~~-----e~l~~~dvVV~~~~~-----------------~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
++.+..++.+ +.++++|+||.+... ......+-+.|++.+. ..||..++.+.+|
T Consensus 81 ~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~~~v~~SS~~vyg 156 (351)
T 3ruf_A 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV-QSFTYAASSSTYG 156 (351)
T ss_dssp EEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEEGGGGT
T ss_pred eEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEecHHhcC
Confidence 4555555532 356789999976531 1112346778888882 2788888777664
No 83
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=93.28 E-value=0.098 Score=57.53 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=34.3
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.+.+++++|+|+||.|..++..|+..|+ .+|+|++.+.
T Consensus 114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~-----~~v~v~~R~~ 151 (277)
T 3don_A 114 GIEDAYILILGAGGASKGIANELYKIVR-----PTLTVANRTM 151 (277)
T ss_dssp TGGGCCEEEECCSHHHHHHHHHHHTTCC-----SCCEEECSCG
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCH
Confidence 3678999999999999999999999999 8999997553
No 84
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=93.20 E-value=0.28 Score=54.61 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=30.7
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
...+|.|||+|.+|..+|++|+..|...++++|.+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 34689999999999999999999998789999864
No 85
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=93.19 E-value=0.099 Score=54.35 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=57.3
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
+||+|.|+ |+||.++++.|+..|. ++++++.+.- +.. .+ ..+.+ +.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~------~V~~~~R~~~-------------------~~~----~~--~~~~~--~~ 47 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH------EVLAVVRDPQ-------------------KAA----DR--LGATV--AT 47 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESCHH-------------------HHH----HH--TCTTS--EE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC------EEEEEEeccc-------------------ccc----cc--cCCCc--eE
Confidence 36999996 9999999999999997 7887763311 111 11 11333 34
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCC----------HHHHHHHhhcccccccceEeccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDN----------VNARLYIDQRCLYFQKPLLESGT 648 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn----------~~aR~~i~~~c~~~~~pli~~g~ 648 (1104)
+...+.+... ..+.++|+||++... +..-+.+-+.|...++.+|..++
T Consensus 48 ~~~D~~d~~~-----~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 48 LVKEPLVLTE-----ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp EECCGGGCCH-----HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred EecccccccH-----hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 4444443221 456889999988743 33334555566666555554443
No 86
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=93.16 E-value=0.25 Score=55.22 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=52.9
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CC
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NA 188 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~ 188 (1104)
|.++...+|.|||+|.+|..++..|+..|. ..|.|+|-+ ..|++..+..|.... ..
T Consensus 1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~ 61 (317)
T 3d0o_A 1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD-------------------TEKVRGDVMDLKHATPYSPTT 61 (317)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSSSC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHhhhhhhhHHhhhhhcCCC
Confidence 345667899999999999999999999886 789999853 123433333333323 34
Q ss_pred cEEEEeecccchhhhcCCceEEEecC
Q 001301 189 VAISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 189 V~V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+++.. + +.+-+++.|+||.+..
T Consensus 62 ~~v~~--~--~~~a~~~aDvVvi~ag 83 (317)
T 3d0o_A 62 VRVKA--G--EYSDCHDADLVVICAG 83 (317)
T ss_dssp CEEEE--C--CGGGGTTCSEEEECCC
T ss_pred eEEEe--C--CHHHhCCCCEEEECCC
Confidence 56654 2 2456889999999864
No 87
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=93.12 E-value=0.21 Score=54.84 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=67.5
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh--CCCcEEEE
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL--NNAVAISA 193 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL--Np~V~V~~ 193 (1104)
.+.+++|+|+|+||.|..++..|...|+++|++++.+.-....+... ++.--. +.+.+. ..++-|.+
T Consensus 114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-------~~~~~~----~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-------INKINL----SHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-------CEEECH----HHHHHTGGGCSEEEEC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-------cccccH----hhHHHHhcCCCEEEEC
Confidence 46789999999999999999999999999999998875444444322 111001 122332 23444443
Q ss_pred eecc--------cchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 194 LTTE--------LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 194 ~~~~--------l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.+.. +..+.+..-.+|++...+.. ...+-+.++++| +..+.
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~-~T~ll~~A~~~G--~~~~~ 231 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDIVYNPY-KTPILIEAEQRG--NPIYN 231 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEESCCSSS-SCHHHHHHHHTT--CCEEC
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEecCCCC-CCHHHHHHHHCc--CEEeC
Confidence 3221 22344556677888776532 235777888998 65543
No 88
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=93.04 E-value=0.12 Score=55.80 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=57.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|++++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+....+...
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~ 62 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA------NVLINGRR-------------------EENVNETIKEIRAQYPDAI 62 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEESS-------------------HHHHHHHHHHHHHHCTTCE
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCce
Confidence 5677888888 68999999999999997 78887643 2345556677777777778
Q ss_pred EeeecccCCcccc--ccchhhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~~~f~~~~DvVi~al 623 (1104)
+..+..++..... .++ +-+...|++|++.
T Consensus 63 ~~~~~~D~~~~~~~~~~~--~~~g~id~lv~nA 93 (267)
T 3t4x_A 63 LQPVVADLGTEQGCQDVI--EKYPKVDILINNL 93 (267)
T ss_dssp EEEEECCTTSHHHHHHHH--HHCCCCSEEEECC
T ss_pred EEEEecCCCCHHHHHHHH--HhcCCCCEEEECC
Confidence 7777766664221 111 1134567777654
No 89
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=92.96 E-value=0.19 Score=52.34 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=59.1
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
++|+|.| .|+||.++++.|+..|. ++++++.+.-....+ + .++.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~------~V~~~~R~~~~~~~~---------------------------~--~~~~ 45 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY------QIYAGARKVEQVPQY---------------------------N--NVKA 45 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC------EEEEEESSGGGSCCC---------------------------T--TEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC------EEEEEECCccchhhc---------------------------C--CceE
Confidence 3799999 89999999999999987 788887543111100 2 3445
Q ss_pred ecccCCccccccchhhhhccCCEEEEccC---------CHHHHHHHhhccccccc-ceEeccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALD---------NVNARLYIDQRCLYFQK-PLLESGT 648 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alD---------n~~aR~~i~~~c~~~~~-pli~~g~ 648 (1104)
+...+.+..+.+ ...++++|+||++.. |+.+-..+-+.|.+.++ .+|..++
T Consensus 46 ~~~D~~d~~~~~--~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 46 VHFDVDWTPEEM--AKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp EECCTTSCHHHH--HTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEecccCCHHHH--HHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 555555311222 245678999998875 44444555566666554 3444333
No 90
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=92.90 E-value=0.3 Score=49.65 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=58.7
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
..+|+|.|+ |++|.++++.|+..| .++++++.+.-....+ ..+.+ +.+..+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~-------------------------~~~~~--~~~~~D 54 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE-------------------------GPRPA--HVVVGD 54 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS-------------------------SCCCS--EEEESC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcccc-------------------------cCCce--EEEEec
Confidence 468999998 889999999999999 4788887653221111 01122 222333
Q ss_pred cch-----hhhcCCceEEEecCC----------HhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 198 LTK-----EKLSDFQAVVFTDIS----------LEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 198 l~~-----e~l~~~dvVV~~~~~----------~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
+++ +.++++|+||.+... ......+-+.|++.+. ..||..++.+.+
T Consensus 55 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~Ss~~~~ 115 (206)
T 1hdo_A 55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGV-DKVVACTSAFLL 115 (206)
T ss_dssp TTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTC-CEEEEECCGGGT
T ss_pred CCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCC-CeEEEEeeeeec
Confidence 321 245567887766432 2234566677887772 257776666554
No 91
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=92.85 E-value=0.2 Score=54.27 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=61.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
+.++|+|.|+|.||+.+++.|...|. ++++++.+. +.+ .+.+ +
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~------~V~~~~r~~---~~~--------------------------~~~~--~ 44 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGH------EVTGLRRSA---QPM--------------------------PAGV--Q 44 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC------CEEEEECTT---SCC--------------------------CTTC--C
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc---ccc--------------------------ccCC--c
Confidence 35689999999999999999999997 788876431 110 1223 3
Q ss_pred eecccCCccccccchhhhhcc-CCEEEEccC------------CHHHHHHHhhccccccc-ceEecccCCccc
Q 001301 595 ALQIRANPETENVFNDTFWEN-LNVVVNALD------------NVNARLYIDQRCLYFQK-PLLESGTLGAKC 653 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~-~DvVi~alD------------n~~aR~~i~~~c~~~~~-pli~~g~~G~~G 653 (1104)
.+...+.+.. . + ...+++ +|+||.+.. |+.+-..+-+.|...++ .+|..++.+..|
T Consensus 45 ~~~~Dl~d~~-~-~-~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg 114 (286)
T 3gpi_A 45 TLIADVTRPD-T-L-ASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG 114 (286)
T ss_dssp EEECCTTCGG-G-C-TTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCC
T ss_pred eEEccCCChH-H-H-HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEc
Confidence 3344444321 1 1 223445 999998762 44455566667776664 466555555444
No 92
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=92.83 E-value=0.16 Score=53.22 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=29.0
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+...+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~------~V~~~~~~ 51 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH------EVTYYGSK 51 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTC------EEEEECTT
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 35677899999999999999999999987 78888743
No 93
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=92.78 E-value=0.41 Score=53.45 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=51.2
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhC-CceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC----CcEEEE
Q 001301 119 ASNILISGMQGLGAEIAKNLILAG-VKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN----AVAISA 193 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaG-Vg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp----~V~V~~ 193 (1104)
..+|.|||+|.+|..++..|+..| +++|.|+|.+ ..|++..+..|....+ .+++..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~-------------------~~~~~~~~~dl~~~~~~~~~~~~i~~ 66 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIWH 66 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------cchHHHHHhhHHHHhhhcCCCeEEEc
Confidence 368999999999999999999988 4789999853 1244444444554444 455553
Q ss_pred eecccchhhhcCCceEEEec
Q 001301 194 LTTELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~ 213 (1104)
. +.+-+++.|+||.+.
T Consensus 67 --~--~~~al~~aDvViia~ 82 (316)
T 1ldn_A 67 --G--DYDDCRDADLVVICA 82 (316)
T ss_dssp --C--CGGGTTTCSEEEECC
T ss_pred --C--cHHHhCCCCEEEEcC
Confidence 2 234588999999984
No 94
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=92.71 E-value=0.2 Score=52.17 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=61.0
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
++|+|.| .|+||..+++.|+..|. ++++++.+.-....+ .+ .++.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~------~V~~~~r~~~~~~~~--------------------------~~--~~~~ 50 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF------EVTAVVRHPEKIKIE--------------------------NE--HLKV 50 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC------EEEEECSCGGGCCCC--------------------------CT--TEEE
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC------EEEEEEcCcccchhc--------------------------cC--ceEE
Confidence 6899999 59999999999999987 888887653222111 11 3444
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCC-----------HHHHHHHhhccccccc-ceEecccCC
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDN-----------VNARLYIDQRCLYFQK-PLLESGTLG 650 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn-----------~~aR~~i~~~c~~~~~-pli~~g~~G 650 (1104)
+...+.+. +.+ ...++++|+||++... +..-..+-+.|...++ .+|..++.+
T Consensus 51 ~~~Dl~d~-~~~--~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~ 114 (227)
T 3dhn_A 51 KKADVSSL-DEV--CEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG 114 (227)
T ss_dssp ECCCTTCH-HHH--HHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred EEecCCCH-HHH--HHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence 55555432 111 2456788999988643 3444455666766665 466555544
No 95
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=92.69 E-value=0.15 Score=58.38 Aligned_cols=94 Identities=14% Similarity=0.211 Sum_probs=60.4
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++++|+|+|+|++|..+++.|++. . .++|.|.+. .|++.+++ ....
T Consensus 15 ~~~~v~IiGaG~iG~~ia~~L~~~-~------~V~V~~R~~-------------------~~a~~la~-------~~~~- 60 (365)
T 2z2v_A 15 RHMKVLILGAGNIGRAIAWDLKDE-F------DVYIGDVNN-------------------ENLEKVKE-------FATP- 60 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT-S------EEEEEESCH-------------------HHHHHHTT-------TSEE-
T ss_pred CCCeEEEEcCCHHHHHHHHHHHcC-C------eEEEEECCH-------------------HHHHHHHh-------hCCe-
Confidence 578999999999999999999887 4 688887431 23322221 1221
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
....+.+ .+.+ .+.++++|+||+|+-.... ..+...|...++.+++..
T Consensus 61 -~~~d~~~-~~~l--~~ll~~~DvVIn~~P~~~~-~~v~~a~l~~G~~~vD~s 108 (365)
T 2z2v_A 61 -LKVDASN-FDKL--VEVMKEFELVIGALPGFLG-FKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp -EECCTTC-HHHH--HHHHTTCSCEEECCCHHHH-HHHHHHHHHTTCCEEECC
T ss_pred -EEEecCC-HHHH--HHHHhCCCEEEECCChhhh-HHHHHHHHHhCCeEEEcc
Confidence 1111211 1111 3567789999999864432 346788999999999844
No 96
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=92.56 E-value=0.25 Score=55.61 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=55.3
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC---CcEEE
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVAIS 192 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp---~V~V~ 192 (1104)
-...+|.|+|+|.+|+.+|..|+..|+ +.|+|+|.+ ..|++..+..|+...| .+++.
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~ 67 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIY 67 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEE
Confidence 345789999999999999999999998 689999852 3366666666766554 34443
Q ss_pred EeecccchhhhcCCceEEEecC
Q 001301 193 ALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
.. +.+-+++.|+||.+..
T Consensus 68 --~~--~~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 68 --SA--EYSDAKDADLVVITAG 85 (326)
T ss_dssp --EC--CGGGGTTCSEEEECCC
T ss_pred --EC--cHHHhcCCCEEEECCC
Confidence 22 2356889999998864
No 97
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=92.46 E-value=0.37 Score=53.35 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=50.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEEEee
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~~~~ 195 (1104)
+|.|+|+|.+|..+|..|+..|. +.++|+|.+. .|++..+..|+..+ ..++|....
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~ 62 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE-------------------DLAVGEAMDLAHAAAGIDKYPKIVGGA 62 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH-------------------HHHHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh-------------------HHHHHHHHHHHhhhhhcCCCCEEEEeC
Confidence 79999999999999999999996 4899998532 23433333444433 345666543
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ .+-+++.|+||.+..
T Consensus 63 d---~~a~~~aDiVViaag 78 (294)
T 1oju_A 63 D---YSLLKGSEIIVVTAG 78 (294)
T ss_dssp C---GGGGTTCSEEEECCC
T ss_pred C---HHHhCCCCEEEECCC
Confidence 2 567889999998864
No 98
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=92.42 E-value=0.2 Score=54.85 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=48.7
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
..++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++.+. ..+ ...
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt-------------------~~ka~~la~~~~-----~~~---~~~ 170 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN-------------------VKTGQYLAALYG-----YAY---INS 170 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC-------------------HHHHHHHHHHHT-----CEE---ESC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-------------------HHHHHHHHHHcC-----Ccc---chh
Confidence 35789999999999999999999999999998742 236666665552 111 111
Q ss_pred cchhhhcCCceEEEecC
Q 001301 198 LTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~ 214 (1104)
+ . +.++|+||.|+.
T Consensus 171 ~--~-~~~~DivInaTp 184 (271)
T 1npy_A 171 L--E-NQQADILVNVTS 184 (271)
T ss_dssp C--T-TCCCSEEEECSS
T ss_pred h--h-cccCCEEEECCC
Confidence 1 1 457899998874
No 99
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=92.32 E-value=0.3 Score=54.95 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=53.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc--EEEEee
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV--AISALT 195 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V--~V~~~~ 195 (1104)
..+|.|+|+|.+|+.+|..|+..|. +.++|+|.+ ..|++..+..|+...|.. .+....
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~~ 65 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTSY 65 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEEe
Confidence 4689999999999999999999997 689999842 346666566666655432 223332
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
.. .+-+++.|+||.+..
T Consensus 66 ~~--~~a~~~aDvVvi~ag 82 (326)
T 3pqe_A 66 GT--YEDCKDADIVCICAG 82 (326)
T ss_dssp EC--GGGGTTCSEEEECCS
T ss_pred Cc--HHHhCCCCEEEEecc
Confidence 22 346789999998864
No 100
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=92.32 E-value=0.39 Score=53.52 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=64.4
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.+...+|||.|+ |.+|..+++.|+..|. +|+++|...-... . .+..+.....++..
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~---~-------------------~~~~~~~~~~~~~~ 80 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGRK---R-------------------NVEHWIGHENFELI 80 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCG---G-------------------GTGGGTTCTTEEEE
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccch---h-------------------hhhhhccCCceEEE
Confidence 345678999997 7799999999999995 6777765321100 0 00011111234555
Q ss_pred ecccchhhhcCCceEEEecCC---------Hh--------HhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 195 TTELTKEKLSDFQAVVFTDIS---------LE--------KAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~~---------~~--------~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
..++.+..+.++|+||.+... .. ....+-++|++.+ +.||..++.+.+|
T Consensus 81 ~~D~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~v~g 146 (343)
T 2b69_A 81 NHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--ARLLLASTSEVYG 146 (343)
T ss_dssp ECCTTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGGB
T ss_pred eCccCChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEECcHHHhC
Confidence 555655556789999976431 11 1234557888888 7888888777655
No 101
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=92.31 E-value=0.52 Score=48.93 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=61.3
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
.+|+|.|+ |++|..+++.|...| .+|++++...-....+. + .++.+..++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~--------------------------~--~~~~~~~Dl 55 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIEN--------------------------E--HLKVKKADV 55 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCCC--------------------------T--TEEEECCCT
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhcc--------------------------C--ceEEEEecC
Confidence 58999995 679999999999999 47888887543222221 1 233333333
Q ss_pred ch-----hhhcCCceEEEecC-----------CHhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 199 TK-----EKLSDFQAVVFTDI-----------SLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 199 ~~-----e~l~~~dvVV~~~~-----------~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
.+ +.++++|+||.+.. +......+-+.|++.+. ..||..++.+.+
T Consensus 56 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~Ss~~~~ 116 (227)
T 3dhn_A 56 SSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGV-NRFLMVGGAGSL 116 (227)
T ss_dssp TCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTC-SEEEEECCSTTS
T ss_pred CCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCC-CEEEEeCChhhc
Confidence 21 24566788776643 23345567788888882 268887776644
No 102
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=92.28 E-value=0.54 Score=52.37 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=30.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|.+|+.+|..|+..|...++|+|.+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~ 37 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA 37 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 589999999999999999999998669999864
No 103
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.20 E-value=0.069 Score=63.05 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=64.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.+||+|+|+|-+|..+++.|...|. .+++||.|.=. .+.+.+. ..+..
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~------~v~vId~d~~~-----------------------~~~~~~~---~~~~~ 50 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENN------DITIVDKDGDR-----------------------LRELQDK---YDLRV 50 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTE------EEEEEESCHHH-----------------------HHHHHHH---SSCEE
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC------CEEEEECCHHH-----------------------HHHHHHh---cCcEE
Confidence 4689999999999999999998887 89999976421 1222221 12333
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc-ccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKP 642 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~-~~p 642 (1104)
+.+..+. ..++...-.+++|++|.++++-++-..+...+... +.|
T Consensus 51 i~Gd~~~--~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~ 96 (461)
T 4g65_A 51 VNGHASH--PDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTP 96 (461)
T ss_dssp EESCTTC--HHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCC--HHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCc
Confidence 4433332 23344455678999999999999988888777664 444
No 104
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=92.18 E-value=0.21 Score=55.58 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=29.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
-.+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~------~V~~~dr~ 53 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGF------KVTVWNRT 53 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC------EEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 4689999999999999999999997 78888754
No 105
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=92.17 E-value=0.22 Score=56.18 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=55.4
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC---CcE
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVA 190 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp---~V~ 190 (1104)
......+|.|+|+|.+|+.+|..|++.|. ..++|+|-+ ..|++..+.-|+...+ ...
T Consensus 15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~ 75 (331)
T 4aj2_A 15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK 75 (331)
T ss_dssp --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence 45667899999999999999999999997 589999842 3467776777776543 223
Q ss_pred EEEeecccchhhhcCCceEEEecC
Q 001301 191 ISALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 191 V~~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.. ..+ .+-+++.|+||.+..
T Consensus 76 i~~-~~d--~~~~~~aDiVvi~aG 96 (331)
T 4aj2_A 76 IVS-SKD--YSVTANSKLVIITAG 96 (331)
T ss_dssp EEE-CSS--GGGGTTEEEEEECCS
T ss_pred EEE-cCC--HHHhCCCCEEEEccC
Confidence 322 222 235889999998754
No 106
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=92.08 E-value=0.29 Score=53.47 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+..++|+|+|+|++|..+++.|...|+ +|+++|.
T Consensus 126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r 160 (275)
T 2hk9_A 126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNR 160 (275)
T ss_dssp TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEEC
Confidence 3678899999999999999999999999 9999875
No 107
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=92.03 E-value=0.28 Score=51.91 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=61.8
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
...+|+|+|+|.+|..+++.|...|. ++++|.+.- ++ +.+. +.+. ++..+
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~-------------------~~----~~~~---~~~~--~i~gd 57 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENV-------------------RK----KVLR---SGAN--FVHGD 57 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGG-------------------HH----HHHH---TTCE--EEESC
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHH-------------------HH----HHHh---cCCe--EEEcC
Confidence 35689999999999999999999887 888885321 21 1222 3333 33333
Q ss_pred cc-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeee
Q 001301 198 LT-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 198 l~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
.+ + ..+.++|+||.+..+.+....+...+++.++. ..|.+.+
T Consensus 58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~-~~iia~~ 105 (234)
T 2aef_A 58 PTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES-VRIIAEA 105 (234)
T ss_dssp TTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCSS-SEEEEEC
T ss_pred CCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCCC-CeEEEEE
Confidence 32 1 23678999999988877777888889998832 2444443
No 108
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=92.02 E-value=0.31 Score=52.74 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=61.1
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+..+|||.|+|.+|+.+++.|...|. +|+.++...- .+ .+.+++ +..+
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~~--------------------------~~~~~~--~~~D 49 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---PM--------------------------PAGVQT--LIAD 49 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---CC--------------------------CTTCCE--EECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---cc--------------------------ccCCce--EEcc
Confidence 45689999999999999999999997 6777665321 11 122222 2223
Q ss_pred cch-----hhhcC-CceEEEecC------------CHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 198 LTK-----EKLSD-FQAVVFTDI------------SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 198 l~~-----e~l~~-~dvVV~~~~------------~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+.+ +.+++ +|+||.+.. +......+-++|++.+. ..||.+++.+.+|
T Consensus 50 l~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-~~~v~~SS~~vyg 114 (286)
T 3gpi_A 50 VTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPL-QHVFFVSSTGVYG 114 (286)
T ss_dssp TTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCC-CEEEEEEEGGGCC
T ss_pred CCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCC-CEEEEEcccEEEc
Confidence 221 23444 888886532 33445667788887773 2688888877766
No 109
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=92.01 E-value=0.53 Score=52.13 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=51.4
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH----hCCCcEEEEee
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE----LNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e----LNp~V~V~~~~ 195 (1104)
||.|||+|++|+.+|-.|+..|. +.|.|+|- -+.|++..+--|+. ++...++....
T Consensus 2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~~ 62 (294)
T 2x0j_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGGA 62 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEES
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCCcchhhhhhhhcccccCCCCCeEecCC
Confidence 79999999999999999999885 88999983 22345555555655 33344554322
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+++.|+||.+..
T Consensus 63 ---d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 63 ---DYSLLKGSEIIVVTAG 78 (294)
T ss_dssp ---CGGGGTTCSEEEECCC
T ss_pred ---CHHHhCCCCEEEEecC
Confidence 2346889999998764
No 110
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=91.97 E-value=0.55 Score=52.39 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=53.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
..+|.|||+|.+|..+|++|+..|...++++|.+.-. ..|++...+.+.+.. + + ...
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~----------------~~~~~~~~~~~~~~g--~---~-~~s- 80 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFND----------------PAASGALRARAAELG--V---E-PLD- 80 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGC----------------TTTHHHHHHHHHHTT--C---E-EES-
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCcc----------------ccchHHHHHHHHHCC--C---C-CCC-
Confidence 4689999999999999999999996689998864310 013444444444432 2 1 101
Q ss_pred chhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 199 TKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
..+.+.+.|+||.|..+......+.++
T Consensus 81 ~~e~~~~aDvVi~avp~~~~~~~~~~i 107 (317)
T 4ezb_A 81 DVAGIACADVVLSLVVGAATKAVAASA 107 (317)
T ss_dssp SGGGGGGCSEEEECCCGGGHHHHHHHH
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 234667889988887654444444333
No 111
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=91.97 E-value=0.36 Score=54.02 Aligned_cols=78 Identities=19% Similarity=0.107 Sum_probs=52.9
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh----CCCcEEE
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL----NNAVAIS 192 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL----Np~V~V~ 192 (1104)
++..+|.|+|+|.+|+.+|..|+..|.+.++|+|.+.. ..|++..+..|... ....+|.
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~-----------------~~~~~g~a~dl~~~~~~~~~~~~i~ 68 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQL-----------------ENPTKGKALDMLEASPVQGFDANII 68 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGG-----------------HHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccch-----------------HHHHHHhhhhHHHhhhhccCCCEEE
Confidence 45679999999999999999999999989999996420 11333333333322 2344555
Q ss_pred EeecccchhhhcCCceEEEecC
Q 001301 193 ALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
.... .+-+++.|+||.+..
T Consensus 69 ~t~d---~~a~~~aDvVIiaag 87 (315)
T 3tl2_A 69 GTSD---YADTADSDVVVITAG 87 (315)
T ss_dssp EESC---GGGGTTCSEEEECCS
T ss_pred EcCC---HHHhCCCCEEEEeCC
Confidence 4322 356889999999853
No 112
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=91.95 E-value=0.26 Score=56.12 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=67.5
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEee
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~ 195 (1104)
++..+|.|||+|.+|..+|++|+..|. .++++|.+.-....+... |-..+....+.++.. .|++-+...+
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE--------GIAGARSIEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT--------TCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC--------CCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence 445789999999999999999999995 789998764322222111 100011112222222 2455554444
Q ss_pred cccch-------hhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 196 TELTK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 196 ~~l~~-------e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
....+ ..+..-++||++.. ......++.+.+.+++ +.|+.+.+.|
T Consensus 91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~vdapVsG 143 (358)
T 4e21_A 91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQG--ITYVDVGTSG 143 (358)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTT--CEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCC--CEEEeCCCCC
Confidence 33111 12344467777654 4556667778888888 8888776554
No 113
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=91.82 E-value=0.22 Score=53.53 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=44.3
Q ss_pred HhcCcEEEEcC-C-cchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 514 LEEAKVFVVGS-G-ALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 514 L~~~~VlvvG~-G-giG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
+++++|+|.|+ | |||.++++.|+..|. +++++|.+. .+.+.+.+.+++.. ..
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~ 73 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA------DVVISDYHE-------------------RRLGETRDQLADLG-LG 73 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHTTC-SS
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC------EEEEecCCH-------------------HHHHHHHHHHHhcC-CC
Confidence 66789999998 7 899999999999998 788887431 23444455554433 23
Q ss_pred EEeeecccCCc
Q 001301 592 NTEALQIRANP 602 (1104)
Q Consensus 592 ~i~~~~~~v~~ 602 (1104)
++..+..++.+
T Consensus 74 ~~~~~~~Dl~~ 84 (266)
T 3o38_A 74 RVEAVVCDVTS 84 (266)
T ss_dssp CEEEEECCTTC
T ss_pred ceEEEEeCCCC
Confidence 56666666654
No 114
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=91.80 E-value=0.47 Score=52.20 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~------~V~~~d~~ 35 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGY------LLNVFDLV 35 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC------EEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHhCCC------eEEEEcCC
Confidence 589999999999999999999997 78888754
No 115
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=91.79 E-value=0.13 Score=57.33 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=27.3
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+..++|+|.|+ |.||..+++.|+..|-. -+++.+|.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~----~~v~~~~~ 58 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET----YKIINFDA 58 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT----EEEEEEEC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC----cEEEEEec
Confidence 56679999996 99999999999999930 16666654
No 116
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=91.68 E-value=0.096 Score=59.17 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHhcCcEEEEc-CCcchHHHHHHHHhc-ccccCCCcceEEecCC
Q 001301 511 QKKLEEAKVFVVG-SGALGCEFLKNLALM-GVSCGNQGKLTITDDD 554 (1104)
Q Consensus 511 q~kL~~~~VlvvG-~GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D 554 (1104)
...++.++|+|.| .|.||+.+++.|... |. +++++|..
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~------~V~~~~r~ 58 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDW------EVFGMDMQ 58 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSC------EEEEEESC
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCC------EEEEEeCC
Confidence 4456778999999 699999999999998 76 78888753
No 117
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=91.65 E-value=0.31 Score=54.32 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=26.7
Q ss_pred HHHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 113 TMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 113 ~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+.++...+|||.|+ |.+|..+++.|+..|. +|+++|..
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~ 52 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR 52 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence 356778889999997 7799999999999996 67777654
No 118
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=91.63 E-value=0.32 Score=49.40 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=28.7
Q ss_pred cCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++|+|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~------~V~~~~r~ 36 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY------EVTVLVRD 36 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC------eEEEEEeC
Confidence 368999997 9999999999999986 78888754
No 119
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=91.63 E-value=0.18 Score=56.24 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 510 LQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 510 ~q~kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+.++..++|+|.|+ |.||..+++.|+..|. +++++|..
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~------~V~~~~r~ 52 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGR------TVRGFDLR 52 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCC------EEEEEeCC
Confidence 456788899999996 9999999999999997 78887643
No 120
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=91.54 E-value=0.16 Score=55.92 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=34.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+.+++|+|+|+||.|..++..|...|+++|++++.+.
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5788999999999999999999999999999998654
No 121
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=91.50 E-value=0.36 Score=53.74 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=60.5
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+...+|||.|+ |.+|..+++.|+..|-. +++.+|....... . +.+..+...-.++.+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~-~--------------------~~l~~~~~~~~~~~~ 80 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN-L--------------------NNVKSIQDHPNYYFV 80 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC-G--------------------GGGTTTTTCTTEEEE
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc-h--------------------hhhhhhccCCCeEEE
Confidence 44568999998 77999999999999932 5555554321100 0 011122222234444
Q ss_pred ecccch-----hhhcC--CceEEEecCC-----------------HhHhhhHHHHHHHcCCCcc-eEEeeecceeE
Q 001301 195 TTELTK-----EKLSD--FQAVVFTDIS-----------------LEKAVEFDDYCHNHQPPIA-FIKSEVRGLFG 245 (1104)
Q Consensus 195 ~~~l~~-----e~l~~--~dvVV~~~~~-----------------~~~~~~ln~~c~~~~~~ip-fI~~~~~G~~G 245 (1104)
..++.+ +.+++ +|+||.+... ......+-++|++.+ ++ ||..++.+.+|
T Consensus 81 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~~v~~SS~~vy~ 154 (346)
T 4egb_A 81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP--HIKLVQVSTDEVYG 154 (346)
T ss_dssp ECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST--TSEEEEEEEGGGGC
T ss_pred EcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEeCchHHhC
Confidence 444432 23333 7777765321 112356678888888 55 88888877665
No 122
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=91.44 E-value=0.33 Score=52.38 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=57.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+....+..+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~ 60 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA------AVAFCARD-------------------GERLRAAESALRQRFPGAR 60 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHHSTTCC
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHHhcCCce
Confidence 5678899998 68999999999999998 78888743 2345556667777677766
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... .+++ .+-+...|++|++.
T Consensus 61 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 61 LFASVCDVLDALQVRAFAEACERTLGCASILVNNA 95 (265)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 7777776664321 1111 01234677777764
No 123
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=91.39 E-value=0.47 Score=49.54 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
-++...+|.|||+|.+|+.+++.|...|. +++++|.+
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~ 51 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK 51 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45777899999999999999999999996 78888753
No 124
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=91.29 E-value=0.26 Score=55.57 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHhhcCeEEEEcC-ChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc
Q 001301 112 ETMRRLFASNILISGM-QGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV 189 (1104)
Q Consensus 112 e~q~kL~~s~VlIiG~-gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V 189 (1104)
.++..|...+|||.|+ |.+|+.+++.|+.. |. +|+++|...-....+.. .+
T Consensus 17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~------------------------~~-- 69 (372)
T 3slg_A 17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVK------------------------HE-- 69 (372)
T ss_dssp ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGG------------------------ST--
T ss_pred cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhcc------------------------CC--
Confidence 3566677889999995 77999999999998 65 77877754311111100 12
Q ss_pred EEEEeecccc-h-----hhhcCCceEEEecC--CH---------------hHhhhHHHHHHHcCCCcceEEeeecceeEE
Q 001301 190 AISALTTELT-K-----EKLSDFQAVVFTDI--SL---------------EKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 190 ~V~~~~~~l~-~-----e~l~~~dvVV~~~~--~~---------------~~~~~ln~~c~~~~~~ipfI~~~~~G~~G~ 246 (1104)
.++.+..+++ + +.++++|+||.+.. .. .....+-++|++.+ ..||.+++.+.+|.
T Consensus 70 ~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg~ 147 (372)
T 3slg_A 70 RMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGM 147 (372)
T ss_dssp TEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGBS
T ss_pred CeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhCC
Confidence 3444444544 2 24557888886432 11 11245677888888 68999888877663
No 125
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.94 Score=49.59 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred HHHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCc--eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc
Q 001301 113 TMRRLFASNILISGM-QGLGAEIAKNLILAGVK--SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV 189 (1104)
Q Consensus 113 ~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg--~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V 189 (1104)
.+..|.+++|+|.|+ ||+|.++|+.|+..|.+ ++.+.|.+ ..+.+.+++.+.+..+..
T Consensus 27 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~ 87 (287)
T 3rku_A 27 AAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPNA 87 (287)
T ss_dssp HHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTTC
T ss_pred chhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCCC
Confidence 456788999999985 68999999999999985 78777642 235667777888877777
Q ss_pred EEEEeecccc
Q 001301 190 AISALTTELT 199 (1104)
Q Consensus 190 ~V~~~~~~l~ 199 (1104)
++..+..+++
T Consensus 88 ~~~~~~~Dv~ 97 (287)
T 3rku_A 88 KVHVAQLDIT 97 (287)
T ss_dssp EEEEEECCTT
T ss_pred eEEEEECCCC
Confidence 7777665553
No 126
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=91.25 E-value=0.32 Score=54.62 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++..||.|||+|.+|+.++..|+..|+ ++|+++|-+
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~-----~~v~L~Di~ 40 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKEL-----GDVVLFDIA 40 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECSS
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCC
Confidence 3567799999999999999999999998 589999843
No 127
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=91.23 E-value=0.41 Score=51.89 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+++++|+|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.++......
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~ 83 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGL------KVVGCARTV-------------------GNIEELAAECKSAGYPG 83 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHHTTCSS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEECCh-------------------HHHHHHHHHHHhcCCCc
Confidence 46778999998 78999999999999997 788876431 23344455555554444
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..+. .+-+..+|+||++.
T Consensus 84 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~A 119 (279)
T 1xg5_A 84 TLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA 119 (279)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 66666666653221 1110 01123677777664
No 128
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=91.22 E-value=0.31 Score=56.40 Aligned_cols=71 Identities=27% Similarity=0.399 Sum_probs=50.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee-
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT- 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~- 195 (1104)
+...+|+|+|+|++|..+++.|...|+++|+++|.+ ..|++..++.+ . +. +..
T Consensus 165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~-------------------~~ra~~la~~~---g--~~--~~~~ 218 (404)
T 1gpj_A 165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT-------------------YERAVELARDL---G--GE--AVRF 218 (404)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS-------------------HHHHHHHHHHH---T--CE--ECCG
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC-------------------HHHHHHHHHHc---C--Cc--eecH
Confidence 678999999999999999999999999999998752 12444333333 2 12 111
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
..+ .+.+.++|+||.|+.
T Consensus 219 ~~l-~~~l~~aDvVi~at~ 236 (404)
T 1gpj_A 219 DEL-VDHLARSDVVVSATA 236 (404)
T ss_dssp GGH-HHHHHTCSEEEECCS
T ss_pred HhH-HHHhcCCCEEEEccC
Confidence 112 245678999999875
No 129
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=91.21 E-value=0.26 Score=47.19 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHc-CCc-eeeee--cCCceeeccCCcchhhcccCcHHHHH
Q 001301 1018 NPTLRQLLQWLQDK-GLN-AYSIS--YGSCLLFNSMFPRHKERMDKKVVDLV 1065 (1104)
Q Consensus 1018 ~~TL~~li~~~~~~-~l~-~~~i~--~g~~~LY~~~~~~~~~~l~~~l~~l~ 1065 (1104)
.+||++|++.++++ |.. -.+|+ .+.++||+..+ .++|.++|++|.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~Df---DDnl~k~L~dLg 67 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDF---EDLNDRTLSEIN 67 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTB---CTTTTSBTTTTT
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCc---cccccCcHHHcC
Confidence 58999999999888 653 23444 35689999665 489999999994
No 130
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=91.19 E-value=0.49 Score=53.17 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=50.5
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHH----HHHhCCCcEEEE
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK----LQELNNAVAISA 193 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~----L~eLNp~V~V~~ 193 (1104)
...+|.|+|+|.+|..+|..|+..|...++|+|.+. .+++..+.. +..+....++..
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~-------------------~~l~~~~~~l~~~~~~~~~~~~i~~ 73 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE-------------------GVPQGKALDLNHCMALIGSPAKIFG 73 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH-------------------HHHHHHHHHHHhHhhccCCCCEEEE
Confidence 346899999999999999999999995599998642 122222222 223333456665
Q ss_pred eecccchhhhcCCceEEEec
Q 001301 194 LTTELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~ 213 (1104)
..+ + +-+++.|+||.+.
T Consensus 74 t~d-~--~al~~aD~VI~av 90 (328)
T 2hjr_A 74 ENN-Y--EYLQNSDVVIITA 90 (328)
T ss_dssp ESC-G--GGGTTCSEEEECC
T ss_pred CCC-H--HHHCCCCEEEEcC
Confidence 433 2 4578999999986
No 131
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=91.15 E-value=0.27 Score=52.98 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=51.9
Q ss_pred cEEEEcC-CcchHHHHHHHHhc-ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 518 KVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 518 ~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
||.|+|| |.+|..+++.+... |+ .-+-++|.+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~-----elva~~d~~----------------------------------------- 35 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDL-----TLSAELDAG----------------------------------------- 35 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTC-----EEEEEECTT-----------------------------------------
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEccC-----------------------------------------
Confidence 7999997 99999999998765 65 223355532
Q ss_pred ecccCCccccccchhhhh-ccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 596 LQIRANPETENVFNDTFW-ENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~-~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
. + + +++. .+.|+|||++ ++++-...-..|.+.++|+|- ||.|+
T Consensus 36 -----~-d----l-~~~~~~~~DvvIDfT-~p~a~~~~~~~a~~~g~~~Vi-gTTG~ 79 (245)
T 1p9l_A 36 -----D-P----L-SLLTDGNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVV-GTTGF 79 (245)
T ss_dssp -----C-C----T-HHHHHTTCCEEEECS-CTTTHHHHHHHHHHTTCEEEE-CCCCC
T ss_pred -----C-C----H-HHHhccCCcEEEEcc-ChHHHHHHHHHHHHcCCCEEE-cCCCC
Confidence 0 0 1 1122 3689999999 455556666789999999984 45554
No 132
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=91.15 E-value=0.53 Score=52.95 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=51.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC---CcEEEE
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVAISA 193 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp---~V~V~~ 193 (1104)
...+|.|+|+|.+|+.+|..|+..|+ +.++|+|-+ ..|++..+..|+...+ ..++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~ 80 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM-------------------EDKLKGEMMDLEHGSLFLHTAKIVS 80 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------HHHHHHHHHHhhhhhhcccCCeEEE
Confidence 34689999999999999999999997 689999852 2244444444554322 344443
Q ss_pred eecccchhhhcCCceEEEec
Q 001301 194 LTTELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~ 213 (1104)
. .+.. -+++.|+||.+.
T Consensus 81 t-~d~~--~~~daDiVIita 97 (330)
T 3ldh_A 81 G-KDYS--VSAGSKLVVITA 97 (330)
T ss_dssp E-SSSC--SCSSCSEEEECC
T ss_pred c-CCHH--HhCCCCEEEEeC
Confidence 2 2332 388999999874
No 133
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=91.15 E-value=0.88 Score=50.44 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=48.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEEeec
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISALTT 196 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~~~~ 196 (1104)
+|.|+|+|.+|..+|..|+..|. +.++|+|.+. .|++..+..+...+ +.+++.. .
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~--~ 60 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE-------------------DRAQAEAEDIAHAAPVSHGTRVWH--G 60 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHTTSCCTTSCCEEEE--E
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH-------------------HHHHHHHHhhhhhhhhcCCeEEEE--C
Confidence 79999999999999999999984 5799998632 13333333343333 3455553 2
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+-+++.|+||.+..
T Consensus 61 --~~~a~~~aDvVIi~~~ 76 (304)
T 2v6b_A 61 --GHSELADAQVVILTAG 76 (304)
T ss_dssp --CGGGGTTCSEEEECC-
T ss_pred --CHHHhCCCCEEEEcCC
Confidence 2345889999999874
No 134
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=91.14 E-value=1 Score=50.09 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=50.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH----hCCCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE----LNNAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e----LNp~V~V~~~~ 195 (1104)
.+|.|+|+|.+|..++..|+..|.-.++|+|-+. .|++..+..|.+ ....+++....
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~ 63 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGTN 63 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc-------------------cHHHHHHHhHHHhHhhcCCCeEEEECC
Confidence 5899999999999999999999973499998532 122222223333 34456666543
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ . +-+++.|+||.+..
T Consensus 64 d-~--~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 64 N-Y--ADTANSDVIVVTSG 79 (309)
T ss_dssp C-G--GGGTTCSEEEECCC
T ss_pred C-H--HHHCCCCEEEEcCC
Confidence 3 2 45789999999863
No 135
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=91.02 E-value=0.23 Score=54.35 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.++|+|+|+||.|..++..|...| .+|++++.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 789999999999999999999999 999999764
No 136
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.24 Score=58.42 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=57.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
.+..++|+|+|+|++|..++..|+..|- -+|+++|.+. .|++.+++. +.+.
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g-----~~V~v~~R~~-------------------~ka~~la~~-----~~~~ 70 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDD-----INVTVACRTL-------------------ANAQALAKP-----SGSK 70 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTT-----EEEEEEESSH-------------------HHHHHHHGG-----GTCE
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCC-----CeEEEEECCH-------------------HHHHHHHHh-----cCCc
Confidence 4567799999999999999999999843 3788886431 233322221 1222
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEec
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 646 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~ 646 (1104)
+ ....+.+. +.+ .+.++++|+||+|+-.... ..+...|...++.+++.
T Consensus 71 ~--~~~D~~d~-~~l--~~~l~~~DvVIn~tp~~~~-~~v~~a~l~~g~~vvd~ 118 (467)
T 2axq_A 71 A--ISLDVTDD-SAL--DKVLADNDVVISLIPYTFH-PNVVKSAIRTKTDVVTS 118 (467)
T ss_dssp E--EECCTTCH-HHH--HHHHHTSSEEEECSCGGGH-HHHHHHHHHHTCEEEEC
T ss_pred E--EEEecCCH-HHH--HHHHcCCCEEEECCchhhh-HHHHHHHHhcCCEEEEe
Confidence 2 12222211 111 2345688999999865422 23455666666666654
No 137
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=90.95 E-value=0.74 Score=50.31 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 689999999999999999999998 78998863
No 138
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=90.88 E-value=0.67 Score=51.48 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+|.|||+|.+|+.++++|+..|. ..++++|.+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~-----~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGA-----IDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSC-----CEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-----CeEEEEcCC
Confidence 4689999999999999999999997 689999865
No 139
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=90.86 E-value=0.41 Score=53.33 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=66.2
Q ss_pred HHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCC
Q 001301 511 QKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP 589 (1104)
Q Consensus 511 q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np 589 (1104)
+..++.++|+|.| .|.||+.+++.|...|. +++++|...-. .......+....+
T Consensus 20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~~~~-------------------~~~~~~~~~~~~~ 74 (351)
T 3ruf_A 20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQ------VVIGLDNFSTG-------------------HQYNLDEVKTLVS 74 (351)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEECCSSC-------------------CHHHHHHHHHTSC
T ss_pred hCCCCCCeEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCCCCC-------------------chhhhhhhhhccc
Confidence 4557789999999 58999999999999987 77777642210 0011122222111
Q ss_pred C---cEEeeecccCCccccccchhhhhccCCEEEEccCC-----------------HHHHHHHhhccccccc-ceEeccc
Q 001301 590 H---LNTEALQIRANPETENVFNDTFWENLNVVVNALDN-----------------VNARLYIDQRCLYFQK-PLLESGT 648 (1104)
Q Consensus 590 ~---~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn-----------------~~aR~~i~~~c~~~~~-pli~~g~ 648 (1104)
. -+++.+...+.+.. .+ ...++++|+||.+... +.+-..+-+.|...++ .+|..++
T Consensus 75 ~~~~~~~~~~~~Dl~d~~-~~--~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 75 TEQWSRFCFIEGDIRDLT-TC--EQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp HHHHTTEEEEECCTTCHH-HH--HHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccCCceEEEEccCCCHH-HH--HHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 0 23455555555322 11 3456789999988753 1112234556666664 4665555
Q ss_pred CCccc
Q 001301 649 LGAKC 653 (1104)
Q Consensus 649 ~G~~G 653 (1104)
.+..|
T Consensus 152 ~~vyg 156 (351)
T 3ruf_A 152 SSTYG 156 (351)
T ss_dssp GGGGT
T ss_pred HHhcC
Confidence 54444
No 140
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=90.82 E-value=0.59 Score=52.12 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=64.5
Q ss_pred cCHHHHHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHH
Q 001301 506 FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 585 (1104)
Q Consensus 506 ~G~~~q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~ 585 (1104)
|+.+..-.-...+|.|||+|.+|+.++++|+..|. -+++++|.+.-.. .|++...+.+.
T Consensus 14 ~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~-----~~V~~~dr~~~~~----------------~~~~~~~~~~~ 72 (317)
T 4ezb_A 14 GTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNA-----ARLAAYDLRFNDP----------------AASGALRARAA 72 (317)
T ss_dssp -CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECGGGGCT----------------TTHHHHHHHHH
T ss_pred CcccCcccccCCeEEEECccHHHHHHHHHHHHcCC-----CeEEEEeCCCccc----------------cchHHHHHHHH
Confidence 44443323245789999999999999999999993 2888887543100 13333333333
Q ss_pred HhCCCcEEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc--cccceEecccC
Q 001301 586 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--FQKPLLESGTL 649 (1104)
Q Consensus 586 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~--~~~pli~~g~~ 649 (1104)
+. .+ . ..+. .+..++.|+||.|+-.......+...... .+..+|+.++.
T Consensus 73 ~~--g~-~-------~~s~-----~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~ 123 (317)
T 4ezb_A 73 EL--GV-E-------PLDD-----VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSV 123 (317)
T ss_dssp HT--TC-E-------EESS-----GGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSC
T ss_pred HC--CC-C-------CCCH-----HHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 32 11 0 0000 23457899999999877777666554432 34556766643
No 141
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=90.72 E-value=0.68 Score=51.06 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=49.9
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+++++|+|.|+ |+||+++++.|+..|. +++++|.+. .+...+.+.+....+ -+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~ 62 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGY------KVRGTARSA-------------------SKLANLQKRWDAKYP-GR 62 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESSH-------------------HHHHHHHHHHHHHST-TT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCCc-------------------ccHHHHHHHhhccCC-Cc
Confidence 34678999996 9999999999999986 777776321 122233333333322 13
Q ss_pred Eeee-cccCCccccccchhhhhccCCEEEEcc
Q 001301 593 TEAL-QIRANPETENVFNDTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~-~~~v~~~~~~~~~~~f~~~~DvVi~al 623 (1104)
++.+ ...+.+.. . + ..+++++|+||.+.
T Consensus 63 ~~~~~~~D~~d~~-~-~-~~~~~~~d~vih~A 91 (342)
T 1y1p_A 63 FETAVVEDMLKQG-A-Y-DEVIKGAAGVAHIA 91 (342)
T ss_dssp EEEEECSCTTSTT-T-T-TTTTTTCSEEEECC
T ss_pred eEEEEecCCcChH-H-H-HHHHcCCCEEEEeC
Confidence 4444 44454321 1 1 24566899999876
No 142
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=90.67 E-value=0.28 Score=52.53 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=46.5
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC-
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH- 590 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~- 590 (1104)
.+++++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+.+.++.
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY------RVVLIARS-------------------KQNLEKVHDEIMRSNKHV 58 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC------EEEEEESC-------------------HHHHHHHHHHHHHHCTTS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC-------------------HHHHHHHHHHHHHhcccc
Confidence 35677899998 68999999999999997 78888643 23455666777776654
Q ss_pred cEEeeecccCCc
Q 001301 591 LNTEALQIRANP 602 (1104)
Q Consensus 591 ~~i~~~~~~v~~ 602 (1104)
.++..+..++.+
T Consensus 59 ~~~~~~~~Dv~~ 70 (250)
T 3nyw_A 59 QEPIVLPLDITD 70 (250)
T ss_dssp CCCEEEECCTTC
T ss_pred CcceEEeccCCC
Confidence 455556555554
No 143
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=90.64 E-value=0.29 Score=54.31 Aligned_cols=37 Identities=16% Similarity=0.437 Sum_probs=31.0
Q ss_pred HHHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 512 KKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 512 ~kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.+.+++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~------~V~~~~r~ 53 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH------EILVIDNF 53 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTC------EEEEEECC
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 3456679999996 9999999999999986 78888753
No 144
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=90.63 E-value=0.46 Score=55.17 Aligned_cols=85 Identities=13% Similarity=0.248 Sum_probs=60.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- +++ .+++.. +. ++..+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v~----~~~~~g--~~--vi~GDa 55 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HIE----TLRKFG--MK--VFYGDA 55 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HHH----HHHHTT--CC--CEESCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHH----HHHhCC--Ce--EEEcCC
Confidence 4579999999999999999999997 6888886431 222 233322 22 222332
Q ss_pred c-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 199 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 199 ~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
+ + .-+.++|+||++.++.+....+-..+++.++
T Consensus 56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p 94 (413)
T 3l9w_A 56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP 94 (413)
T ss_dssp TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence 2 2 2356889999999988888889999999884
No 145
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=90.57 E-value=1.4 Score=48.77 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=48.3
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH---hCCCcEEEEe
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE---LNNAVAISAL 194 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e---LNp~V~V~~~ 194 (1104)
..+|+|+|+|++|+.++..|+..|. +.++++|.+. .+++..+..+.. +.+.+.+...
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~v~~~ 67 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK-------------------ERVEAEVLDMQHGSSFYPTVSIDGS 67 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHHHTGGGSTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------hHHHHHHHHHHhhhhhcCCeEEEeC
Confidence 4689999999999999999999995 4799998632 122211111221 2234455433
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+.+.++|+||.+..
T Consensus 68 ~---~~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 68 D---DPEICRDADMVVITAG 84 (319)
T ss_dssp S---CGGGGTTCSEEEECCC
T ss_pred C---CHHHhCCCCEEEECCC
Confidence 2 2345778999999874
No 146
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=90.52 E-value=0.19 Score=58.32 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=62.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
+.+|+|+|+|-+|..+++.|...|+ .+++||.|.-. + +.+++. . +.+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~------~vvvId~d~~~-------------------v----~~~~~~--g--~~v 50 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV------KMVVLDHDPDH-------------------I----ETLRKF--G--MKV 50 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC------CEEEEECCHHH-------------------H----HHHHHT--T--CCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC------CEEEEECCHHH-------------------H----HHHHhC--C--CeE
Confidence 4589999999999999999999998 89999976421 1 112221 1 223
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQK 641 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~ 641 (1104)
+...... ..++...-++++|+||.|+++...-..+-..++..+.
T Consensus 51 i~GDat~--~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p 94 (413)
T 3l9w_A 51 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP 94 (413)
T ss_dssp EESCTTC--HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred EEcCCCC--HHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence 3333322 2222222357899999999999988888888877653
No 147
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=90.42 E-value=0.55 Score=48.34 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=26.8
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+||+|.|+ |+||..+++.|+..|. ++++++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~------~V~~~~R 32 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH------EVTAIVR 32 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC------EEEEEEc
Confidence 47999995 9999999999999997 7888764
No 148
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=90.38 E-value=0.83 Score=47.28 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=58.7
Q ss_pred eEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|+|.| .|++|.++++.|+..|. ++++++.+.-....+ + .++.+..+++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---------------------------~--~~~~~~~D~~ 51 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---------------------------N--NVKAVHFDVD 51 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---------------------------T--TEEEEECCTT
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---------------------------C--CceEEEeccc
Confidence 699999 67799999999999995 788877643211111 2 2334444443
Q ss_pred h------hhhcCCceEEEecC---------CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 K------EKLSDFQAVVFTDI---------SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~------e~l~~~dvVV~~~~---------~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
+ +.+++.|+||.+.. +......+-++|++.+. ..||..++.+
T Consensus 52 d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~~ 108 (219)
T 3dqp_A 52 WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEV-KRFILLSTIF 108 (219)
T ss_dssp SCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTC-CEEEEECCTT
T ss_pred CCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCC-CEEEEECccc
Confidence 2 24667899887654 33345677788888872 2567666544
No 149
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=90.37 E-value=0.73 Score=49.57 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=51.2
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+...+|.|||+|.+|..+++.|...|...++++|.+. .+++.+.+.+ . +. .. .
T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~~---g--~~--~~-~ 60 (266)
T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQKV---E--AE--YT-T 60 (266)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHHT---T--CE--EE-S
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHHc---C--Cc--ee-C
Confidence 3456899999999999999999999986688887421 1333322221 1 22 21 1
Q ss_pred ccchhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 197 ELTKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
.+ ++.+.+.|+||.|..+......+.++
T Consensus 61 ~~-~~~~~~~Dvvi~av~~~~~~~v~~~l 88 (266)
T 3d1l_A 61 DL-AEVNPYAKLYIVSLKDSAFAELLQGI 88 (266)
T ss_dssp CG-GGSCSCCSEEEECCCHHHHHHHHHHH
T ss_pred CH-HHHhcCCCEEEEecCHHHHHHHHHHH
Confidence 11 24567899999998655443333333
No 150
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=90.29 E-value=0.38 Score=52.51 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=51.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+++++|+|.| .||||.++++.|+..|. +++++|.+ ..|.+.+.+.+++..+ -
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~ 62 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI------MVVLTCRD-------------------VTKGHEAVEKLKNSNH-E 62 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHTTTC-C
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCC-C
Confidence 45678889988 58999999999999997 78888643 2344455555655443 2
Q ss_pred EEeeecccCCcc-cc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPE-TE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~-~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+...+.+. .. .++. .+.+..+|+||++.
T Consensus 63 ~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nA 99 (311)
T 3o26_A 63 NVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNA 99 (311)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred ceEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 456666666543 11 1110 01234677777764
No 151
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=90.28 E-value=0.47 Score=50.45 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=44.2
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
++++++|+|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+....+
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~-- 58 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGA------AVVVADIN-------------------AEAAEAVAKQIVADGG-- 58 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHTTC--
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhcCC--
Confidence 35678899998 68999999999999998 78888643 2344455555655443
Q ss_pred EEeeecccCCc
Q 001301 592 NTEALQIRANP 602 (1104)
Q Consensus 592 ~i~~~~~~v~~ 602 (1104)
++..+..++.+
T Consensus 59 ~~~~~~~D~~~ 69 (253)
T 3qiv_A 59 TAISVAVDVSD 69 (253)
T ss_dssp EEEEEECCTTS
T ss_pred cEEEEEccCCC
Confidence 45555555554
No 152
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=90.27 E-value=0.83 Score=48.05 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=60.9
Q ss_pred cCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.++|+|.| .|++|.++++.|+..|--++++++.+.-....+. .+ .+..+..+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-------------------------~~--~~~~~~~D 75 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-------------------------PT--NSQIIMGD 75 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-------------------------CT--TEEEEECC
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-------------------------cC--CcEEEEec
Confidence 35799999 5789999999999999547888776432211110 01 23444444
Q ss_pred cch-----hhhcCCceEEEecCC--Hh-HhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 198 LTK-----EKLSDFQAVVFTDIS--LE-KAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 198 l~~-----e~l~~~dvVV~~~~~--~~-~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+++ ..+++.|+||.+... .. ....+-+.|++.+. ..+|..++.+.++
T Consensus 76 l~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~-~~iV~iSS~~~~~ 130 (236)
T 3qvo_A 76 VLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDV-KRLIFVLSLGIYD 130 (236)
T ss_dssp TTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTC-CEEEEECCCCC--
T ss_pred CCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCC-CEEEEEecceecC
Confidence 432 356788999876542 22 23456677778772 2477777766554
No 153
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=90.27 E-value=0.38 Score=52.75 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=28.4
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.++|+|.| .|.||+.+++.|...|. ++++++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN------TPIILTRS 35 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 46899999 69999999999999987 78887754
No 154
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=90.23 E-value=0.48 Score=51.02 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=53.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.+.+..+..+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 65 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA------KLSLVDVSS-------------------EGLEASKAAVLETAPDAE 65 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHHHCTTCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHhhcCCce
Confidence 5678899998 78999999999999997 788876331 233444555666555556
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..++ .+-+..+|+||++.
T Consensus 66 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA 100 (267)
T 1iy8_A 66 VLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNA 100 (267)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 6666666654221 1111 01134678777764
No 155
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=90.23 E-value=0.89 Score=53.41 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=59.7
Q ss_pred cCeEEEEcCChhhHHHHHHHHHh-CC--ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 119 ASNILISGMQGLGAEIAKNLILA-GV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvla-GV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
..+|+|||+||+|+.+|..|+.. ++ ..|+++|.+..- .++ .+.+ .+++....
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-~~~-------------------~~~~-----g~~~~~~~ 67 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-VDV-------------------AQQY-----GVSFKLQQ 67 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-CCH-------------------HHHH-----TCEEEECC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh-hhH-------------------Hhhc-----CCceeEEe
Confidence 46899999999999999999986 45 589999864431 111 1111 13333222
Q ss_pred ---ccc---chhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 196 ---TEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 196 ---~~l---~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
.++ -..++++.|+||.+.... .-..+-++|.+.| +-+|...
T Consensus 68 Vdadnv~~~l~aLl~~~DvVIN~s~~~-~~l~Im~acleaG--v~YlDTa 114 (480)
T 2ph5_A 68 ITPQNYLEVIGSTLEENDFLIDVSIGI-SSLALIILCNQKG--ALYINAA 114 (480)
T ss_dssp CCTTTHHHHTGGGCCTTCEEEECCSSS-CHHHHHHHHHHHT--CEEEESS
T ss_pred ccchhHHHHHHHHhcCCCEEEECCccc-cCHHHHHHHHHcC--CCEEECC
Confidence 111 123556669999766444 3457889999999 6666643
No 156
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=90.22 E-value=1.3 Score=48.91 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=66.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc-
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL- 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l- 198 (1104)
++|.+||+|-.|..+|+||+.+|. .++++|.+.-....+.. .|-..+....+.. -..++-+......-
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~--------~Ga~~a~s~~e~~--~~~dvv~~~l~~~~~ 72 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVA--------AGASAARSARDAV--QGADVVISMLPASQH 72 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH--------TTCEECSSHHHHH--TTCSEEEECCSCHHH
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHH--------cCCEEcCCHHHHH--hcCCceeecCCchHH
Confidence 479999999999999999999997 68888754322111111 1111111111111 12233443333211
Q ss_pred chh-------h---hcCCceEEEec-CCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 199 TKE-------K---LSDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 199 ~~e-------~---l~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.++ . +..=++||++. .+++...++.+.+.++| +-|+.+.+.|-
T Consensus 73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G--~~~lDaPVsGg 126 (300)
T 3obb_A 73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG--LAMLDAPVSGG 126 (300)
T ss_dssp HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTT--CEEEECCEESC
T ss_pred HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CEEEecCCCCC
Confidence 111 1 22236777765 47888899999999999 99999877663
No 157
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=90.15 E-value=0.55 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=31.1
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+..++|+|+|+||+|..++..|...| .+|+++|.
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R 150 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNR 150 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEEC
Confidence 56789999999999999999999999 78999874
No 158
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=90.14 E-value=0.28 Score=53.74 Aligned_cols=36 Identities=14% Similarity=0.403 Sum_probs=30.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+|.|||+|.+|+.+++.|+..|+ +..+++++|.+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~---~~~~V~v~dr~ 38 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGY---DPNRICVTNRS 38 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTC---CGGGEEEECSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCC---CCCeEEEEeCC
Confidence 5789999999999999999999986 12578888743
No 159
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=90.14 E-value=0.38 Score=54.04 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.|.+++|.|||+|.||..+++.|...|. +++.+|...
T Consensus 137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~------~V~~~dr~~ 173 (324)
T 3hg7_A 137 GLKGRTLLILGTGSIGQHIAHTGKHFGM------KVLGVSRSG 173 (324)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC------EEEEECSSC
T ss_pred ccccceEEEEEECHHHHHHHHHHHhCCC------EEEEEcCCh
Confidence 3567899999999999999999999987 788887543
No 160
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=90.12 E-value=0.54 Score=51.22 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=49.8
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+..++|+|+|+||.|..++..|...| .+|++++.+ ..|++.+++.+.... .+.+..
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~-------------------~~~a~~l~~~~~~~~---~~~~~~- 172 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT-------------------FSKTKELAERFQPYG---NIQAVS- 172 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC-------------------HHHHHHHHHHccccC---CeEEee-
Confidence 56789999999999999999999999 899998752 236666666654321 222221
Q ss_pred ccchhhh-cCCceEEEecC
Q 001301 197 ELTKEKL-SDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l-~~~dvVV~~~~ 214 (1104)
+ ++.. .++|+||.+..
T Consensus 173 -~-~~~~~~~~DivIn~t~ 189 (272)
T 1p77_A 173 -M-DSIPLQTYDLVINATS 189 (272)
T ss_dssp -G-GGCCCSCCSEEEECCC
T ss_pred -H-HHhccCCCCEEEECCC
Confidence 1 1111 37899888774
No 161
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=90.07 E-value=1.5 Score=48.30 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=62.5
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe-
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL- 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~- 194 (1104)
+.+.+|||.|+ |++|+++++.|+..|. +|++++.+. .+.+.+.+.+....+ -.++.+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~ 67 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV 67 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence 34678999997 7899999999999996 677665321 133333344443332 234444
Q ss_pred ecccch-----hhhcCCceEEEecC------CH--------hHhhhHHHHHHH-cCCCcceEEeeeccee
Q 001301 195 TTELTK-----EKLSDFQAVVFTDI------SL--------EKAVEFDDYCHN-HQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 195 ~~~l~~-----e~l~~~dvVV~~~~------~~--------~~~~~ln~~c~~-~~~~ipfI~~~~~G~~ 244 (1104)
..++++ +.+++.|+||.+.. +. .....+-+.|++ .+. ..||.+++.+.+
T Consensus 68 ~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~iv~~SS~~~~ 136 (342)
T 1y1p_A 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSV-KRFVLTSSTVSA 136 (342)
T ss_dssp CSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEECCGGGT
T ss_pred ecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-cEEEEeccHHHh
Confidence 444432 34667899997643 11 122345566764 331 367776666554
No 162
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=90.06 E-value=0.69 Score=50.63 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC--ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
...+|.|||+|..|..+++.|...|. ..|+++|.+. .|++.+.+. . .+ ....
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~----~-gi--~~~~ 55 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEK----C-GV--HTTQ 55 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHT----T-CC--EEES
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHH----c-CC--EEeC
Confidence 35689999999999999999999996 3688887522 133322221 1 12 2221
Q ss_pred cccchhhhcCCceEEEecCCHhHhhhHHHHH
Q 001301 196 TELTKEKLSDFQAVVFTDISLEKAVEFDDYC 226 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c 226 (1104)
+ ..+.+.+.|+||.+..+......+.++.
T Consensus 56 ~--~~~~~~~aDvVilav~p~~~~~vl~~l~ 84 (280)
T 3tri_A 56 D--NRQGALNADVVVLAVKPHQIKMVCEELK 84 (280)
T ss_dssp C--HHHHHSSCSEEEECSCGGGHHHHHHHHH
T ss_pred C--hHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence 1 2356788999999986544444444443
No 163
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=90.05 E-value=0.2 Score=48.73 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
+.+|+|+|+|.+|..+++.|...|. .++++|.|.= ++ +.+++ ..+. .
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~------~v~vid~~~~-------------------~~----~~~~~--~g~~--~ 53 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI------PLVVIETSRT-------------------RV----DELRE--RGVR--A 53 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC------CEEEEESCHH-------------------HH----HHHHH--TTCE--E
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC------CEEEEECCHH-------------------HH----HHHHH--cCCC--E
Confidence 3589999999999999999999998 8999986531 11 22222 2233 2
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCL 637 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~ 637 (1104)
+...... ...+...-.+++|+||.|+++...-..+...+.
T Consensus 54 i~gd~~~--~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~ 93 (140)
T 3fwz_A 54 VLGNAAN--EEIMQLAHLECAKWLILTIPNGYEAGEIVASAR 93 (140)
T ss_dssp EESCTTS--HHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHH
T ss_pred EECCCCC--HHHHHhcCcccCCEEEEECCChHHHHHHHHHHH
Confidence 3322221 112222224689999999998776554444443
No 164
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=90.02 E-value=0.36 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.6
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+..++|+|.|+ |.||+.+++.|+..|. +++++|.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r 59 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ------KVVGLDN 59 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEEC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 66789999996 9999999999999986 7888764
No 165
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=90.00 E-value=0.51 Score=53.38 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=52.3
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEE
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISA 193 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~ 193 (1104)
|...+|.|+|+ |.+|+.+|..|+..|. ..|+|+|-+ +.|++..+.-|+.. .|...+..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~~ 66 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLTF 66 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceEE
Confidence 45679999998 9999999999999996 689999842 23555544445543 23333432
Q ss_pred eecccchhhhcCCceEEEecC
Q 001301 194 LTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. .+. .+-+++.|+||.+..
T Consensus 67 t-~d~-~~al~dADvVvitaG 85 (343)
T 3fi9_A 67 T-SDI-KEALTDAKYIVSSGG 85 (343)
T ss_dssp E-SCH-HHHHTTEEEEEECCC
T ss_pred c-CCH-HHHhCCCCEEEEccC
Confidence 2 111 245789999998853
No 166
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=89.96 E-value=0.36 Score=52.04 Aligned_cols=93 Identities=10% Similarity=0.121 Sum_probs=57.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
+...+|.|||+|.+|+.+++.|+..|. ..++++|.+. .+++.+++.+ .+.+
T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~-----~~v~~~~~~~-------------------~~~~~~~~~~-----g~~~ 58 (266)
T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRKGF-----RIVQVYSRTE-------------------ESARELAQKV-----EAEY 58 (266)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTC-----CEEEEECSSH-------------------HHHHHHHHHT-----TCEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC-----eEEEEEeCCH-------------------HHHHHHHHHc-----CCce
Confidence 445799999999999999999999987 3377776331 1222222211 1221
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc--cccceEecc
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--FQKPLLESG 647 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~--~~~pli~~g 647 (1104)
.. +. .+.++++|+||.|+-....+..+...... .+..+++..
T Consensus 59 --~~-----~~-----~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s 102 (266)
T 3d1l_A 59 --TT-----DL-----AEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA 102 (266)
T ss_dssp --ES-----CG-----GGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred --eC-----CH-----HHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence 11 11 13356899999999877666666554322 355566543
No 167
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=89.92 E-value=1 Score=50.34 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~~~ 195 (1104)
.+|.|+|+|.+|..++..|+..|. ..|.|+|- -..|++..+..|.... +.+++..
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~v~~-- 64 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV-------------------VKDRTKGDALDLEDAQAFTAPKKIYS-- 64 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------SHHHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHHHHHHHHHHHHHHhcCCeEEEE--
Confidence 689999999999999999998884 57888884 2235665555555543 4455554
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ +.+-+++.|+||.+..
T Consensus 65 ~--~~~a~~~aDvVii~ag 81 (318)
T 1ez4_A 65 G--EYSDCKDADLVVITAG 81 (318)
T ss_dssp C--CGGGGTTCSEEEECCC
T ss_pred C--CHHHhCCCCEEEECCC
Confidence 2 2456889999999864
No 168
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=89.88 E-value=0.37 Score=53.90 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
|.+++|.|||+|.||..+++.|...|. +++..|.+
T Consensus 137 l~g~tvGIiG~G~IG~~vA~~l~~~G~------~V~~~dr~ 171 (315)
T 3pp8_A 137 REEFSVGIMGAGVLGAKVAESLQAWGF------PLRCWSRS 171 (315)
T ss_dssp STTCCEEEECCSHHHHHHHHHHHTTTC------CEEEEESS
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 567899999999999999999999987 78888743
No 169
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=89.87 E-value=0.96 Score=50.63 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=50.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHH----HhCCCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQ----ELNNAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~----eLNp~V~V~~~~ 195 (1104)
.+|.|||+|.+|..++..|+..|.-.|+|+|-+. .|++..+..+. .+....++....
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~-------------------~~l~~~~~~l~~~~~~~~~~~~i~~t~ 65 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK-------------------NMPHGKALDTSHTNVMAYSNCKVSGSN 65 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTHHHHHTCCCCEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHHHhhhhhcCCCcEEEECC
Confidence 5899999999999999999999984499998532 12332222332 234455666543
Q ss_pred cccchhhhcCCceEEEec
Q 001301 196 TELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~ 213 (1104)
+ . +-+++.|+||.+.
T Consensus 66 d-~--~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 66 T-Y--DDLAGADVVIVTA 80 (322)
T ss_dssp C-G--GGGTTCSEEEECC
T ss_pred C-H--HHhCCCCEEEEeC
Confidence 3 2 4578999999986
No 170
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=89.87 E-value=0.39 Score=51.99 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=33.5
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCcc
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVV 154 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V 154 (1104)
+.+ +|+|+|+||.|..++..|...|+++|++++.+.-
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ 143 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE 143 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 467 9999999999999999999999999999987543
No 171
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=89.83 E-value=0.89 Score=49.76 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=59.4
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
..+|||.|+ |.+|+.+++.|...|. +|+.++... ....+. .++.+..+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~-----------------------------~~~~~~~D 50 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI-GNKAIN-----------------------------DYEYRVSD 50 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-C----------------------------------CCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC-CcccCC-----------------------------ceEEEEcc
Confidence 368999995 7799999999999996 677777641 100010 22222222
Q ss_pred cch----hhhcCCceEEEecC-------------CHhHhhhHHHHHHHcCCCcc-eEEeeecceeE
Q 001301 198 LTK----EKLSDFQAVVFTDI-------------SLEKAVEFDDYCHNHQPPIA-FIKSEVRGLFG 245 (1104)
Q Consensus 198 l~~----e~l~~~dvVV~~~~-------------~~~~~~~ln~~c~~~~~~ip-fI~~~~~G~~G 245 (1104)
++. +.++++|+||.+.. +......+-++|++.+ ++ ||..++.+.+|
T Consensus 51 l~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~--~~r~v~~SS~~vyg 114 (311)
T 3m2p_A 51 YTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENN--ISNIVYASTISAYS 114 (311)
T ss_dssp CCHHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTT--CCEEEEEEEGGGCC
T ss_pred ccHHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcC--CCEEEEEccHHHhC
Confidence 221 24557788876543 1223456778889988 55 88888877765
No 172
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=89.78 E-value=0.47 Score=53.30 Aligned_cols=36 Identities=14% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|.+++|.|||+|.||..+++.|...|. +++.+|.+
T Consensus 134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~------~V~~~dr~ 169 (324)
T 3evt_A 134 TLTGQQLLIYGTGQIGQSLAAKASALGM------HVIGVNTT 169 (324)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred cccCCeEEEECcCHHHHHHHHHHHhCCC------EEEEECCC
Confidence 3667899999999999999999999998 78888754
No 173
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=89.77 E-value=0.3 Score=53.60 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++++|+| +||+|..+++.|+..|. +++++|.+ ..|++.+++.+... +.+.
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~------~V~i~~R~-------------------~~~~~~l~~~~~~~-~~~~ 170 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA------EVVLCGRK-------------------LDKAQAAADSVNKR-FKVN 170 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC------EEEEEESS-------------------HHHHHHHHHHHHHH-HTCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC------EEEEEECC-------------------HHHHHHHHHHHHhc-CCcE
Confidence 5678999999 99999999999999998 48888632 13455555555432 1222
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccC
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
.....+.+.. .+ ...++++|+||+|..
T Consensus 171 --~~~~D~~~~~-~~--~~~~~~~DvlVn~ag 197 (287)
T 1lu9_A 171 --VTAAETADDA-SR--AEAVKGAHFVFTAGA 197 (287)
T ss_dssp --CEEEECCSHH-HH--HHHTTTCSEEEECCC
T ss_pred --EEEecCCCHH-HH--HHHHHhCCEEEECCC
Confidence 2222233211 11 245677899999974
No 174
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=89.64 E-value=0.37 Score=52.96 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=50.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC--C-CcEEE
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN--N-AVAIS 192 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN--p-~V~V~ 192 (1104)
.++.++|+|+|+||+|..+++.|+..| +|+++|.+ ..|++.+++.+.... . .+.+.
T Consensus 125 ~l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~~~~~~d 183 (287)
T 1nvt_A 125 RVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT-------------------VEKAEALAKEIAEKLNKKFGEEVK 183 (287)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS-------------------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECC-------------------HHHHHHHHHHHhhhcccccceeEE
Confidence 367889999999999999999999999 99998742 135555555554321 1 11222
Q ss_pred EeecccchhhhcCCceEEEecC
Q 001301 193 ALTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 193 ~~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.. + .+.+.++|+||.+..
T Consensus 184 ~~~--~-~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 184 FSG--L-DVDLDGVDIIINATP 202 (287)
T ss_dssp EEC--T-TCCCTTCCEEEECSC
T ss_pred Eee--H-HHhhCCCCEEEECCC
Confidence 221 1 345567888887763
No 175
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=89.62 E-value=1.1 Score=49.43 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=64.6
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC--CCcEEEEeec
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN--NAVAISALTT 196 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN--p~V~V~~~~~ 196 (1104)
+.||.+||+|-.|..+|+||+.+|. .++++|.+.-....+... |-..++ .+.++- .++-+...+.
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~----s~~e~~~~~dvvi~~l~~ 71 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLTKL--------GATVVE----NAIDAITPGGIVFSVLAD 71 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTTTT--------TCEECS----SGGGGCCTTCEEEECCSS
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHc--------CCeEeC----CHHHHHhcCCceeeeccc
Confidence 4589999999999999999999997 688888654333333211 111111 111222 2233333222
Q ss_pred cc------ch---hhhcCCceEEEec-CCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 197 EL------TK---EKLSDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 197 ~l------~~---e~l~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.- .. ..+..-++||++. .+++...++.+.+.++| +-|+.+.+.|-
T Consensus 72 ~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g--~~~ldapVsGg 126 (297)
T 4gbj_A 72 DAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYG--AHYVGAPIFAR 126 (297)
T ss_dssp HHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTT--CEEEECCEECC
T ss_pred hhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcC--CceecCCcCCC
Confidence 11 11 1234456777765 47888889999999999 88998877663
No 176
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=89.61 E-value=0.76 Score=48.21 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=31.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+.+++|+|.| .|+||.++++.|+..|.. .+++++|.+
T Consensus 15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~----~~V~~~~r~ 53 (242)
T 2bka_A 15 RMQNKSVFILGASGETGRVLLKEILEQGLF----SKVTLIGRR 53 (242)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCC----SEEEEEESS
T ss_pred hhcCCeEEEECCCcHHHHHHHHHHHcCCCC----CEEEEEEcC
Confidence 36678999999 699999999999999850 278888754
No 177
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=89.58 E-value=0.97 Score=50.02 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+.+.+|||.|+ |++|.++++.|+..|. +|+++|..
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~ 53 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF 53 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 456678999997 7899999999999995 78888764
No 178
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=89.46 E-value=0.5 Score=51.62 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=28.8
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~------~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC------SVTIWNRS 33 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------EEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC------eEEEEcCC
Confidence 589999999999999999999997 78888754
No 179
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=89.35 E-value=0.95 Score=48.74 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=58.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.++|+|.|+|.||+.+++.|...|. ++++++.+. .+... +.. + .++.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~------~V~~~~r~~-------------------~~~~~----~~~--~--~~~~ 51 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW------RIIGTSRNP-------------------DQMEA----IRA--S--GAEP 51 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC------EEEEEESCG-------------------GGHHH----HHH--T--TEEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC------EEEEEEcCh-------------------hhhhh----Hhh--C--CCeE
Confidence 4789999999999999999999987 777775321 12111 111 2 2444
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCH----HHHHHHhhcccc--cc-cceEecccCCccc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNV----NARLYIDQRCLY--FQ-KPLLESGTLGAKC 653 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~----~aR~~i~~~c~~--~~-~pli~~g~~G~~G 653 (1104)
+...+.+ + + +.++|+||.+.... .....+-+.|.. .+ +.+|..++.+..|
T Consensus 52 ~~~D~~d-----~--~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg 108 (286)
T 3ius_A 52 LLWPGEE-----P--S-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG 108 (286)
T ss_dssp EESSSSC-----C--C-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred EEecccc-----c--c-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence 5444443 1 1 67899999887322 222334445554 33 3466555555444
No 180
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=89.30 E-value=0.6 Score=49.72 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=53.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+++++|+|.| .||||.++++.|+..|. ..++++|.+. + + ...+.+.+..+..+
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~-----~~v~~~~r~~---------------~----~--~~~~~l~~~~~~~~ 56 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNL-----KNFVILDRVE---------------N----P--TALAELKAINPKVN 56 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC-----SEEEEEESSC---------------C----H--HHHHHHHHHCTTSE
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-----cEEEEEecCc---------------h----H--HHHHHHHHhCCCce
Confidence 4577899998 78999999999999997 4488876431 0 0 12234445555567
Q ss_pred EeeecccCCcc-cc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPE-TE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~-~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+. .. ..+. .+-+.++|+||++.
T Consensus 57 ~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~A 92 (254)
T 1sby_A 57 ITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGA 92 (254)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECC
Confidence 77777777643 21 1111 01234789888775
No 181
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=89.27 E-value=0.74 Score=51.38 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=48.9
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEEeec
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISALTT 196 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~~~~ 196 (1104)
+|.|||+|.+|+.++..|+..|. +.++++|.+. .+++.....+.... +.+.+.. .
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~--~ 60 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK-------------------KRAEGDALDLIHGTPFTRRANIYA--G 60 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHGGGSCCCEEEE--C
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCcEEEe--C
Confidence 79999999999999999999994 5799988531 23333333333322 3445554 2
Q ss_pred ccchhhhcCCceEEEecC
Q 001301 197 ELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+.+++.|+||.+..
T Consensus 61 --d~~~~~~aDvViiav~ 76 (319)
T 1a5z_A 61 --DYADLKGSDVVIVAAG 76 (319)
T ss_dssp --CGGGGTTCSEEEECCC
T ss_pred --CHHHhCCCCEEEEccC
Confidence 2345789999999875
No 182
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=89.22 E-value=0.48 Score=55.84 Aligned_cols=95 Identities=8% Similarity=0.174 Sum_probs=68.2
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.++|+|+|.|-+|..+|+.|-. + .++.||+.|. .|++.+++. .|++.|
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~~-~------~~v~iIE~d~-------------------~r~~~la~~----l~~~~V-- 282 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLEQ-T------YSVKLIERNL-------------------QRAEKLSEE----LENTIV-- 282 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-T------SEEEEEESCH-------------------HHHHHHHHH----CTTSEE--
T ss_pred ccEEEEEcchHHHHHHHHHhhh-c------CceEEEecCH-------------------HHHHHHHHH----CCCceE--
Confidence 4689999999999999999843 2 4788886543 345555544 355433
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 644 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 644 (1104)
+.....+ .+++..+-.+++|++|.++++-+.-..+.-++.+++.+-+
T Consensus 283 i~GD~td--~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kv 329 (461)
T 4g65_A 283 FCGDAAD--QELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKV 329 (461)
T ss_dssp EESCTTC--HHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEE
T ss_pred Eeccccc--hhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccc
Confidence 3333332 3455566678999999999999999999999988877644
No 183
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=89.20 E-value=0.68 Score=48.72 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=58.3
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcc-cccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMG-VSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~G-v~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
..++|+|.| .|+||.++++.|+..| . ++++++.+.-....+ . .+ .
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~------~V~~~~R~~~~~~~~-----~--------------------~~--~ 68 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTI------KQTLFARQPAKIHKP-----Y--------------------PT--N 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE------EEEEEESSGGGSCSS-----C--------------------CT--T
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCc------eEEEEEcChhhhccc-----c--------------------cC--C
Confidence 346899999 6999999999999998 5 788877543211110 0 01 3
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHH---HHHhhccccccc-ceEecccCC
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNAR---LYIDQRCLYFQK-PLLESGTLG 650 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR---~~i~~~c~~~~~-pli~~g~~G 650 (1104)
++.+..++.+.. .+ ...++++|+||++....... ..+-..|...+. .+|..++.+
T Consensus 69 ~~~~~~Dl~d~~-~~--~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 69 SQIIMGDVLNHA-AL--KQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp EEEEECCTTCHH-HH--HHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred cEEEEecCCCHH-HH--HHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence 445555555321 11 34677899999876543211 223344444444 355544444
No 184
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=89.16 E-value=0.54 Score=51.36 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=27.2
Q ss_pred CcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++|+|.|+ |.||..+++.|+..|. +++++|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r 32 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY------EVVVVDN 32 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC------EEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC------EEEEEeC
Confidence 47999996 9999999999999987 7888764
No 185
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=89.12 E-value=1.4 Score=49.30 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=62.6
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+++++|||.|+ |++|.++++.|+.. |..+|++++.+. .+...+.+.+ . ...+..+
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~---~-~~~v~~~ 75 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEF---N-DPRMRFF 75 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHH---C-CTTEEEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHh---c-CCCEEEE
Confidence 45688999995 77999999999999 998899887532 1233332222 2 2345555
Q ss_pred ecccch-----hhhcCCceEEEecCC--H-------h--------HhhhHHHHHHHcCCCcceEEeee
Q 001301 195 TTELTK-----EKLSDFQAVVFTDIS--L-------E--------KAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 195 ~~~l~~-----e~l~~~dvVV~~~~~--~-------~--------~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
..++.+ +.+.+.|+||.+... . . ....+-++|++.+. ..||..++
T Consensus 76 ~~Dl~d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v-~~~V~~SS 142 (344)
T 2gn4_A 76 IGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI-SQVIALST 142 (344)
T ss_dssp ECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-SEEEEECC
T ss_pred ECCCCCHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEecC
Confidence 555533 356788999976531 1 1 11345567777772 14665554
No 186
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=89.11 E-value=0.33 Score=52.16 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+.+++|+|.| .||||.++++.|+..|. +++++|.+ ..+.+.+.+.+....+
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~-- 78 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA------RVVLTARD-------------------VEKLRAVEREIVAAGG-- 78 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHTTC--
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEECC-------------------HHHHHHHHHHHHHhCC--
Confidence 36778899998 69999999999999998 78888743 2344455555655443
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..+. .+.+...|+||++.
T Consensus 79 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 79 EAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114 (262)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 55566655654221 1111 01234577777664
No 187
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=89.06 E-value=0.82 Score=51.31 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+....||.|||+|.+|..++..|+..|. ..++++|.|
T Consensus 11 ~~~~~kI~ViGaG~vG~~iA~~la~~g~-----~~V~L~Di~ 47 (328)
T 2hjr_A 11 VIMRKKISIIGAGQIGSTIALLLGQKDL-----GDVYMFDII 47 (328)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECSS
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEECC
Confidence 3345699999999999999999999998 569999854
No 188
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=89.06 E-value=0.73 Score=50.44 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=30.9
Q ss_pred hhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
++.++|+|.| .||+|..+++.|+..|.. |+++|.
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R 151 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGR 151 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence 5778999999 999999999999999986 999874
No 189
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=89.05 E-value=0.53 Score=52.76 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=31.0
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
...||.|||+|.+|+.++..|+..|+ ++|+++|-+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~-----~~v~l~Di~ 38 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQL-----GDVVLFDIA 38 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-----ceEEEEeCC
Confidence 45799999999999999999999998 689999854
No 190
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=89.04 E-value=1.4 Score=46.96 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
...+...+|.|||+|..|..+|++|+..|. .|+++|.+
T Consensus 14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~ 51 (245)
T 3dtt_A 14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD 51 (245)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 347889999999999999999999999996 78888864
No 191
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.02 E-value=0.22 Score=50.52 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhc-ccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALM-GVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D 554 (1104)
+.+.+|+|+|+|.+|..+++.|... |. +++++|.|
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~------~V~vid~~ 72 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK------ISLGIEIR 72 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS------CEEEEESC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC------eEEEEECC
Confidence 3467999999999999999999999 87 88999854
No 192
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=88.98 E-value=0.6 Score=54.81 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE-
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN- 592 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~- 592 (1104)
+..++|+|+|+|++|..+++.|+..|. +++++|.+. +++.++-..+.
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~------~V~v~~R~~--------------------------~~a~~la~~~~~ 48 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGI------KVTVACRTL--------------------------ESAKKLSAGVQH 48 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTC------EEEEEESSH--------------------------HHHHHTTTTCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC------EEEEEECCH--------------------------HHHHHHHHhcCC
Q ss_pred EeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001301 593 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 645 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 645 (1104)
+..+...+.+...- .+.++++|+||+|+....... +...|...++.+++
T Consensus 49 ~~~~~~Dv~d~~~l---~~~l~~~DvVIn~a~~~~~~~-i~~a~l~~g~~vvd 97 (450)
T 1ff9_A 49 STPISLDVNDDAAL---DAEVAKHDLVISLIPYTFHAT-VIKSAIRQKKHVVT 97 (450)
T ss_dssp EEEEECCTTCHHHH---HHHHTTSSEEEECCC--CHHH-HHHHHHHHTCEEEE
T ss_pred ceEEEeecCCHHHH---HHHHcCCcEEEECCccccchH-HHHHHHhCCCeEEE
No 193
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=88.97 E-value=0.58 Score=48.56 Aligned_cols=75 Identities=9% Similarity=0.137 Sum_probs=47.3
Q ss_pred CcEEEEc-CCcchHHHHHHHH-hcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 517 AKVFVVG-SGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa-~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++|+|.| .|+||.++++.|+ ..|. ++++++.+.-+ |.+ .+....+ +++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~------~V~~~~r~~~~------------------~~~----~~~~~~~--~~~ 55 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM------HITLYGRQLKT------------------RIP----PEIIDHE--RVT 55 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC------EEEEEESSHHH------------------HSC----HHHHTST--TEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc------eEEEEecCccc------------------cch----hhccCCC--ceE
Confidence 3599999 5999999999999 8887 78887643110 100 1111223 345
Q ss_pred eecccCCccccccchhhhhccCCEEEEccC
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
.+...+.+.. .+ ...++++|+||++..
T Consensus 56 ~~~~D~~d~~-~~--~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 56 VIEGSFQNPG-XL--EQAVTNAEVVFVGAM 82 (221)
T ss_dssp EEECCTTCHH-HH--HHHHTTCSEEEESCC
T ss_pred EEECCCCCHH-HH--HHHHcCCCEEEEcCC
Confidence 5555555322 11 345678999998875
No 194
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=88.97 E-value=3.1 Score=47.69 Aligned_cols=106 Identities=8% Similarity=0.079 Sum_probs=69.5
Q ss_pred HHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC--CcEE
Q 001301 115 RRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN--AVAI 191 (1104)
Q Consensus 115 ~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp--~V~V 191 (1104)
..++.++|||.|+ |++|+++++.|+..|...++++|.. .++.....+.|.+..+ ...+
T Consensus 31 ~~~~~k~vLVTGatG~IG~~l~~~L~~~g~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~v 91 (399)
T 3nzo_A 31 SVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDIS-------------------ENNMVELVRDIRSSFGYINGDF 91 (399)
T ss_dssp HHHHTCEEEEETTTSHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHHTCCCSSEE
T ss_pred HHhCCCEEEEEcCChHHHHHHHHHHHHCCCCEEEEEECC-------------------cchHHHHHHHHHHhcCCCCCcE
Confidence 3477899999995 6699999999999998889988742 2344455556666654 2467
Q ss_pred EEeecccchh-----hh--cCCceEEEecCC--------H-----------hHhhhHHHHHHHcCCCcceEEeee
Q 001301 192 SALTTELTKE-----KL--SDFQAVVFTDIS--------L-----------EKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 192 ~~~~~~l~~e-----~l--~~~dvVV~~~~~--------~-----------~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
..+..++++. .+ .+.|+||.+... . .....+-++|++++. ..||..++
T Consensus 92 ~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv-~r~V~iSS 165 (399)
T 3nzo_A 92 QTFALDIGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGA-KKYFCVST 165 (399)
T ss_dssp EEECCCTTSHHHHHHHHHCCCCSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEECC
T ss_pred EEEEEeCCCHHHHHHHHHhCCCCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence 7777666431 22 478999865431 1 012346678888872 14665554
No 195
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=88.92 E-value=0.64 Score=51.73 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=28.4
Q ss_pred HHHHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 511 QKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 511 q~kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
...+..++|+|.|+ |.||..+++.|+..|. +++++|.
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r 59 (343)
T 2b69_A 22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGH------EVTVVDN 59 (343)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEEC
T ss_pred ccccCCCEEEEEcCccHHHHHHHHHHHHCCC------EEEEEeC
Confidence 34567789999996 9999999999999986 7888764
No 196
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=88.91 E-value=1.6 Score=46.96 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=63.0
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
..+|||.|+|.+|+.+++.|...|. +++.++.+. .++. .+.. + .++.+..++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~----~~~~--~--~~~~~~~D~ 56 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQME----AIRA--S--GAEPLLWPG 56 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHH----HHHH--T--TEEEEESSS
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhh----hHhh--C--CCeEEEecc
Confidence 3689999999999999999999996 566665421 1211 1222 2 244444444
Q ss_pred ch-hhhcCCceEEEecCC----HhHhhhHHHHHHH--cCCCcceEEeeecceeE
Q 001301 199 TK-EKLSDFQAVVFTDIS----LEKAVEFDDYCHN--HQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 199 ~~-e~l~~~dvVV~~~~~----~~~~~~ln~~c~~--~~~~ipfI~~~~~G~~G 245 (1104)
++ + +.++|+||.+... ......+-+.|++ .+. ..||.+++.+.+|
T Consensus 57 ~d~~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~-~~~v~~Ss~~vyg 108 (286)
T 3ius_A 57 EEPS-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQF-RWVGYLSTTAVYG 108 (286)
T ss_dssp SCCC-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGC-SEEEEEEEGGGGC
T ss_pred cccc-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCc-eEEEEeecceecC
Confidence 32 2 7789999987642 2234566777877 452 3688888888776
No 197
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=88.87 E-value=0.53 Score=52.42 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=54.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++|+|.| .||||.++++.|+..|. +++++|.+ ..|.+.+++.+....+..+
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~------~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~ 60 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC------KVAIADIR-------------------QDSIDKALATLEAEGSGPE 60 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHHTCGGG
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC------EEEEEECC-------------------HHHHHHHHHHHHhcCCCCe
Confidence 4567899998 68999999999999998 78887643 2344555556665555456
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..++ .+-+...|+||++.
T Consensus 61 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nA 95 (319)
T 3ioy_A 61 VMGVQLDVASREGFKMAADEVEARFGPVSILCNNA 95 (319)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 6666666654221 1111 01123567777664
No 198
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=88.82 E-value=0.39 Score=52.49 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.++.++|+|.|+ |.||+.+++.|+..|. +++++|...
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~~ 41 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGE------EVTVLDDLR 41 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC------CEEEECCCS
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCC------EEEEEecCC
Confidence 456789999997 9999999999999987 788887543
No 199
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=88.79 E-value=1.1 Score=50.14 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=50.5
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh----CCCcEEEEee
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL----NNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL----Np~V~V~~~~ 195 (1104)
+|.|+|+|.+|+.+|..|+..|+ ..++|+|-+. .|++..+..|+.. ...+++....
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~~ 62 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGTN 62 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEECC
Confidence 79999999999999999999997 5899998532 2344333444432 2345665331
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+.+-+++.|+||.+..
T Consensus 63 ---~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 63 ---DYGPTEDSDVCIITAG 78 (314)
T ss_dssp ---SSGGGTTCSEEEECCC
T ss_pred ---CHHHhCCCCEEEECCC
Confidence 2456889999999864
No 200
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=88.76 E-value=1.6 Score=48.68 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=65.1
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEe
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISAL 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~ 194 (1104)
+...+|||.|+ |++|..+++.|+..|. +|+++|...-. ...+.+.+.+.+... .+ .++.+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~ 86 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG---------------HQRNLDEVRSLVSEKQWS--NFKFI 86 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHHHHHHHHHHSCHHHHT--TEEEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhhHHHHhhhcccccCC--ceEEE
Confidence 55678999997 7799999999999995 67777753210 001222222221111 12 34455
Q ss_pred ecccch-----hhhcCCceEEEecCC---------H--------hHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 195 TTELTK-----EKLSDFQAVVFTDIS---------L--------EKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 195 ~~~l~~-----e~l~~~dvVV~~~~~---------~--------~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
..++.+ +.+++.|+||.+... . .....+-+.|++.+. ..||..++.+.+|
T Consensus 87 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~SS~~~~~ 158 (352)
T 1sb8_A 87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV-QSFTYAASSSTYG 158 (352)
T ss_dssp ECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEEGGGGT
T ss_pred ECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEeccHHhcC
Confidence 555532 356789999976541 1 112345577888772 2578777776654
No 201
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=88.74 E-value=0.75 Score=51.66 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=51.5
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCC---Cc
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP---HL 591 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np---~~ 591 (1104)
...||.|||+|.+|+.++..|+..|+. ++|+++|.+ ..|++..+.-+....| .+
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~----~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~ 64 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIA----QEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPK 64 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC----SEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC----CeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCc
Confidence 456899999999999999999999983 589999842 2355555555555443 23
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccC
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
++.. . + .+-+++.|+||.+..
T Consensus 65 ~i~~--~---~-------~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 65 KIYS--A---E-------YSDAKDADLVVITAG 85 (326)
T ss_dssp EEEE--C---C-------GGGGTTCSEEEECCC
T ss_pred EEEE--C---c-------HHHhcCCCEEEECCC
Confidence 3321 1 0 123678999998854
No 202
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=88.73 E-value=1.2 Score=50.06 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=52.6
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEE
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISA 193 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~ 193 (1104)
...+|.|+|+|.+|..++..|+..|. ..|.|+|- -..|++..+..|.... ..+++..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~i~~ 68 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLSNALPFTSPKKIYS 68 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHhHHHHHHHHHHHHhcCCeEEEE
Confidence 34689999999999999999998884 57888884 1235555455555443 4455554
Q ss_pred eecccchhhhcCCceEEEecC
Q 001301 194 LTTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ +.+-+++.|+||.+..
T Consensus 69 --~--~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 69 --A--EYSDAKDADLVVITAG 85 (326)
T ss_dssp --C--CGGGGGGCSEEEECCC
T ss_pred --C--CHHHhCCCCEEEEcCC
Confidence 2 2455889999999864
No 203
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=88.73 E-value=1.1 Score=48.25 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=63.5
Q ss_pred eEEEEcC-ChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 121 NILISGM-QGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
+|.|+|+ |.+|..+++.+... |..=+.++|.. +|+ +.+....++|-|++..-..
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl---------~~~~~~~~DvvIDfT~p~a 57 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPL---------SLLTDGNTEVVIDFTHPDV 57 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCT---------HHHHHTTCCEEEECSCTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCH---------HHHhccCCcEEEEccChHH
Confidence 7999997 88999999998765 77555677753 111 1122235666665543222
Q ss_pred chhhh-----cCCceEEEecC-CHhHhhhHHHHHHHc-CCCcceEEeeecceeEEE
Q 001301 199 TKEKL-----SDFQAVVFTDI-SLEKAVEFDDYCHNH-QPPIAFIKSEVRGLFGNI 247 (1104)
Q Consensus 199 ~~e~l-----~~~dvVV~~~~-~~~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~v 247 (1104)
..+++ .+.++||.++. +.+....|.++|++. + +|++.+..+++...+
T Consensus 58 ~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~--~~vv~a~N~siGv~l 111 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPN--TSVLIAPNFAIGAVL 111 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTT--CEEEECSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCC--CCEEEECCccHHHHH
Confidence 22222 25677776664 555667788888876 7 788887776665433
No 204
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=88.70 E-value=1.2 Score=48.53 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=28.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~------~V~~~dr~ 33 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF------DVTVWNRN 33 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC------CEEEECSS
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC------eEEEEcCC
Confidence 479999999999999999999997 78888754
No 205
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=88.69 E-value=0.88 Score=53.30 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=61.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
+++++|+|+|+|+.|..+|+.|...|. ++++.|..... .+ ...+.|++. .+++. ..
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~----------------~~---~~~~~L~~~--gi~~~--~g 62 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFD----------------EN---PTAQSLLEE--GIKVV--CG 62 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGG----------------GC---HHHHHHHHT--TCEEE--ES
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCccc----------------CC---hHHHHHHhC--CCEEE--EC
Confidence 567899999999999999999999995 78888864310 00 123356655 34443 23
Q ss_pred ccchhhhcC-CceEEEecC-CHhHhhhHHHHHHHcCCCcceEE
Q 001301 197 ELTKEKLSD-FQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 197 ~l~~e~l~~-~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.-.++.+.+ +|+||.+.. +... -.-..+++.| +|++.
T Consensus 63 ~~~~~~~~~~~d~vv~spgi~~~~--p~~~~a~~~g--i~v~~ 101 (451)
T 3lk7_A 63 SHPLELLDEDFCYMIKNPGIPYNN--PMVKKALEKQ--IPVLT 101 (451)
T ss_dssp CCCGGGGGSCEEEEEECTTSCTTS--HHHHHHHHTT--CCEEC
T ss_pred CChHHhhcCCCCEEEECCcCCCCC--hhHHHHHHCC--CcEEe
Confidence 223345666 999998764 2221 2234678889 88775
No 206
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=88.63 E-value=0.69 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+++++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~------~V~~~~r~ 47 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGA------SVVLLGRT 47 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEecC
Confidence 46778899998 58999999999999998 78888743
No 207
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=88.52 E-value=1.1 Score=52.68 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=54.8
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
.+..++|+|+|+|++|..++..|+..|--+|+++|.+. .|++.+++ . +.+.+. .
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~-------------------~ka~~la~----~-~~~~~~--~ 73 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL-------------------ANAQALAK----P-SGSKAI--S 73 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH-------------------HHHHHHHG----G-GTCEEE--E
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH-------------------HHHHHHHH----h-cCCcEE--E
Confidence 45567899999999999999999998434799987531 23333222 1 123221 1
Q ss_pred cccc-----hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEE
Q 001301 196 TELT-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 196 ~~l~-----~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
.++. .+.+.++|+||.|.... ....+.+.|.+.+ ..++.
T Consensus 74 ~D~~d~~~l~~~l~~~DvVIn~tp~~-~~~~v~~a~l~~g--~~vvd 117 (467)
T 2axq_A 74 LDVTDDSALDKVLADNDVVISLIPYT-FHPNVVKSAIRTK--TDVVT 117 (467)
T ss_dssp CCTTCHHHHHHHHHTSSEEEECSCGG-GHHHHHHHHHHHT--CEEEE
T ss_pred EecCCHHHHHHHHcCCCEEEECCchh-hhHHHHHHHHhcC--CEEEE
Confidence 1111 13456788888886432 2234566677776 55554
No 208
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=88.51 E-value=1.4 Score=47.76 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=54.0
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.+|.|||+|.+|+.+++.|+. |. +++++|.+. .|++.+++. .+.+..
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~------~V~~~~~~~-------------------~~~~~~~~~------g~~~~~- 48 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF------PTLVWNRTF-------------------EKALRHQEE------FGSEAV- 48 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS------CEEEECSST-------------------HHHHHHHHH------HCCEEC-
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC------eEEEEeCCH-------------------HHHHHHHHC------CCcccC-
Confidence 479999999999999999999 87 688886321 122222221 111110
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHH-HHHHHhhcc--cccccceEeccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVN-ARLYIDQRC--LYFQKPLLESGT 648 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~-aR~~i~~~c--~~~~~pli~~g~ 648 (1104)
. .+.+.++|+||.|+-+.. .+..+.... ...+..+++.++
T Consensus 49 -----------~-~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~ 91 (289)
T 2cvz_A 49 -----------P-LERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATS 91 (289)
T ss_dssp -----------C-GGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSC
T ss_pred -----------H-HHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 0 233568999999998775 555554432 233556676543
No 209
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=88.49 E-value=1.1 Score=49.93 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 115 RRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 115 ~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..+...+|||.|+ |++|..+++.|+..|...+++++..
T Consensus 42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~ 80 (357)
T 2x6t_A 42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL 80 (357)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence 3456678999997 7799999999999996678888754
No 210
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=88.48 E-value=0.79 Score=51.12 Aligned_cols=101 Identities=11% Similarity=0.073 Sum_probs=59.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+..++|+|.|+ |.||..+++.|...|. ++++++.+. .-...|...+ +.+.. +.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~------~V~~l~R~~---------------~~~~~~~~~~-~~l~~--~~-- 61 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHR------PTYILARPG---------------PRSPSKAKIF-KALED--KG-- 61 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTC------CEEEEECSS---------------CCCHHHHHHH-HHHHH--TT--
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC------CEEEEECCC---------------CCChhHHHHH-HHHHh--CC--
Confidence 34579999997 9999999999999986 677776432 0011222211 11221 33
Q ss_pred EeeecccCCccccccchhhhhc--cCCEEEEccC--CHHHHHHHhhcccccc-cce
Q 001301 593 TEALQIRANPETENVFNDTFWE--NLNVVVNALD--NVNARLYIDQRCLYFQ-KPL 643 (1104)
Q Consensus 593 i~~~~~~v~~~~~~~~~~~f~~--~~DvVi~alD--n~~aR~~i~~~c~~~~-~pl 643 (1104)
++.+...+.+. +.+ ...++ ++|+||.+.. |+..-..+-+.|...+ ++.
T Consensus 62 v~~~~~Dl~d~-~~l--~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~ 114 (346)
T 3i6i_A 62 AIIVYGLINEQ-EAM--EKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKR 114 (346)
T ss_dssp CEEEECCTTCH-HHH--HHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSE
T ss_pred cEEEEeecCCH-HHH--HHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceE
Confidence 34445555432 112 34567 8999998876 5555556666776655 443
No 211
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=88.47 E-value=0.87 Score=50.17 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=28.9
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.||| +|.+|+.+++.|+..|. +++++|.+
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~------~V~~~~~~ 54 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY------PISILDRE 54 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC------CEEEECTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 5899999 99999999999999987 78888854
No 212
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=88.45 E-value=0.74 Score=50.91 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.9
Q ss_pred CcEEEEcC-CcchHHHHHHHHhc-ccccCCCcceEEecCC
Q 001301 517 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D 554 (1104)
++|+|.|+ |.||..+++.|+.. |. +++++|.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~------~V~~~~r~ 34 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY------EVYGLDIG 34 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC------EEEEEESC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 47999996 99999999999998 65 78887753
No 213
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=88.43 E-value=0.56 Score=52.64 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=29.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHh--cccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLAL--MGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~--~Gv~~~~~g~i~iiD~D 554 (1104)
+..++|+|.| .|+||..+++.|+. .|. +++++|..
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~------~V~~~~r~ 45 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKA------KVVVLDKF 45 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTS------EEEEEECC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCC------eEEEEECC
Confidence 4568999997 69999999999999 776 88888753
No 214
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=88.39 E-value=1.1 Score=48.24 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=31.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.++. +|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus 114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~ 148 (263)
T 2d5c_A 114 PLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT 148 (263)
T ss_dssp CCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3667 99999999999999999999998 89998853
No 215
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=88.37 E-value=1 Score=50.04 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=52.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHhC-CceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC---CCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAG-VKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaG-Vg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN---p~V~V~~~~ 195 (1104)
.||.|+|+|.+|..++..|+..| ++.|.|+|-+ ..|++..+..|.... ..+++..
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~-- 59 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA-- 59 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence 37999999999999999999887 4679998852 235555555565543 3556664
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+-+++.|+||.+..
T Consensus 60 ~--~~~a~~~aD~Vii~ag 76 (310)
T 2xxj_A 60 G--SYGDLEGARAVVLAAG 76 (310)
T ss_dssp C--CGGGGTTEEEEEECCC
T ss_pred C--CHHHhCCCCEEEECCC
Confidence 2 3456889999999864
No 216
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=88.36 E-value=2.5 Score=44.13 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=30.6
Q ss_pred hhcCeEEEEc-CChhhHHHHHHHHHhCCc-eEEEEeCC
Q 001301 117 LFASNILISG-MQGLGAEIAKNLILAGVK-SVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG-~gglGseiaKnLvlaGVg-~itLvD~d 152 (1104)
|...+|+|.| .|++|.++++.|+..|.. ++++++.+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence 6678999999 578999999999999973 78888764
No 217
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=88.35 E-value=0.76 Score=49.95 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.|+ ||||.++++.|+..|. +++++|.
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~------~V~~~~r 60 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGA------HVVVTAR 60 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 56789999985 8999999999999997 7888864
No 218
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=88.31 E-value=0.57 Score=51.19 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=27.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+|.|||+|.+|+.+++.|+..|. +++++|.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~------~V~~~~~ 31 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGY------PLIIYDV 31 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTC------CEEEECS
T ss_pred CeEEEEeccHHHHHHHHHHHHCCC------EEEEEeC
Confidence 379999999999999999999987 7888874
No 219
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=88.31 E-value=0.56 Score=52.71 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=30.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..||.|||+|.+|+.++..|+..|+. +.|+++|-
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~----~~l~l~D~ 38 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGIT----DELVVIDV 38 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC----SEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC----ceEEEEec
Confidence 46899999999999999999999973 58999974
No 220
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=88.21 E-value=1.2 Score=49.23 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=29.0
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.||.|||+|+||+.++-.|+..|.. ++|.|+|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~----~el~L~D 32 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV----DEIALVD 32 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC----SEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC----CEEEEEe
Confidence 4899999999999999999999974 7899997
No 221
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=88.16 E-value=0.84 Score=49.52 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=53.7
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC-
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH- 590 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~- 590 (1104)
.+.+++|+|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.+.+....
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 62 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA------SVMIVGRNP-------------------DKLAGAVQELEALGANG 62 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHTTCCSS
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHHhCCCC
Confidence 46788999998 78999999999999998 788887432 2344455555554432
Q ss_pred cEEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 591 LNTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 591 ~~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
.++..+..++.+... ..++ .+.+...|++|++.
T Consensus 63 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 99 (281)
T 3svt_A 63 GAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCA 99 (281)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 256666666654221 1111 01234567777654
No 222
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=88.11 E-value=0.65 Score=51.28 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.2
Q ss_pred hcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 515 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 515 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++++|+|.|+ |+||..+++.|+..|. +++++|.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~------~V~~~~r 35 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGY------EVYGADR 35 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEECS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEEC
Confidence 4678999996 9999999999999987 7888774
No 223
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=88.09 E-value=0.5 Score=51.10 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.+ +++|+|+||.|..++..|+..|+ .+|+|+|.+
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~-----~~I~v~nR~ 141 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGV-----KDIWVVNRT 141 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTC-----CCEEEEESC
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCC
Confidence 467 99999999999999999999999 899999754
No 224
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=88.08 E-value=0.39 Score=51.70 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=28.6
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.++|+|.| .|+||.++++.|+..|. +++++|.+.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~------~V~~~~r~~ 37 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE------ILRLADLSP 37 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE------EEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC------EEEEEecCC
Confidence 45799998 79999999999999987 788887543
No 225
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=88.06 E-value=0.57 Score=53.33 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
-++..+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~------~V~v~dr~ 54 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGH------ECVVYDLN 54 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC------EEEEECSC
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 3557899999999999999999999997 78888754
No 226
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=88.00 E-value=1.4 Score=45.70 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=60.9
Q ss_pred CeEEEEc-CChhhHHHHHHHH-HhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 120 SNILISG-MQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 120 s~VlIiG-~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
++|+|.| .|++|.++++.|+ ..|. ++++++.+.-+ ++ +.+.+..+ .+..+..+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~----~~~~~~~~--~~~~~~~D 60 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RI----PPEIIDHE--RVTVIEGS 60 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HS----CHHHHTST--TEEEEECC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cc----hhhccCCC--ceEEEECC
Confidence 4599999 4889999999999 8998 67777653110 11 11212233 34445555
Q ss_pred cch-----hhhcCCceEEEecC--CHhHhhhHHHHHHHcCCCcceEEeeeccee
Q 001301 198 LTK-----EKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 244 (1104)
Q Consensus 198 l~~-----e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~ 244 (1104)
+++ +.+++.|+||.+.. +.. ...+-+.|++.+. ..+|..++.+.+
T Consensus 61 ~~d~~~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~~~~-~~iv~iSs~~~~ 112 (221)
T 3r6d_A 61 FQNPGXLEQAVTNAEVVFVGAMESGSD-MASIVKALSRXNI-RRVIGVSMAGLS 112 (221)
T ss_dssp TTCHHHHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHHTTC-CEEEEEEETTTT
T ss_pred CCCHHHHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHhcCC-CeEEEEeeceec
Confidence 532 35678999998764 344 5566677777772 146666655543
No 227
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=87.98 E-value=1.1 Score=50.03 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=58.3
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
|...+|||.|+ |.+|..+++.|...| .++++++.+.-. ...|+.. .+.+.. +.+ +.+.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~---------------~~~~~~~-~~~l~~--~~v--~~~~ 66 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPR---------------SPSKAKI-FKALED--KGA--IIVY 66 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCC---------------CHHHHHH-HHHHHH--TTC--EEEE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCC---------------ChhHHHH-HHHHHh--CCc--EEEE
Confidence 44678999998 779999999999999 567777653200 0112221 122222 333 4444
Q ss_pred cccch-----hhhc--CCceEEEecC--CHhHhhhHHHHHHHcC
Q 001301 196 TELTK-----EKLS--DFQAVVFTDI--SLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 196 ~~l~~-----e~l~--~~dvVV~~~~--~~~~~~~ln~~c~~~~ 230 (1104)
.++++ ..++ +.|+||.+.. +......+-++|++.+
T Consensus 67 ~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp CCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred eecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcC
Confidence 55532 3566 8999998765 5566677888888877
No 228
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=87.98 E-value=0.98 Score=49.25 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=29.0
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+...+|||.|+ |.+|+.+++.|...|. +|++++...
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 41 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR 41 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence 356789999998 7799999999999996 677777543
No 229
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=87.94 E-value=0.9 Score=50.10 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=32.2
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|..++|+|+|+|++|..+++.|...|. +|+++|.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~ 188 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGAR 188 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEEC
Confidence 4678999999999999999999999998 8999886
No 230
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=87.92 E-value=0.63 Score=50.61 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+++++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.++....
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~-- 73 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI------AVYGCARD-------------------AKNVSAAVDGLRAAGH-- 73 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHTTTC--
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCC--
Confidence 35678899998 68999999999999998 78887743 2344555556655443
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..+. .+-+...|++|++.
T Consensus 74 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 74 DVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 45555555553221 1111 01134567777653
No 231
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=87.91 E-value=0.31 Score=50.14 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=29.8
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
...|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~------~V~v~Ek~ 34 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGH------QVHLFDKS 34 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC------CEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC------CEEEEECC
Confidence 3569999999999999999999999 89999853
No 232
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=87.81 E-value=0.86 Score=51.78 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+...+|+|+|+|++|..++..+...|. +++++|.
T Consensus 164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr 198 (361)
T 1pjc_A 164 GVKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI 198 (361)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 3677899999999999999999999999 8999985
No 233
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=87.80 E-value=0.71 Score=49.26 Aligned_cols=82 Identities=11% Similarity=0.204 Sum_probs=49.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.||.|||+|.+|+.++++|+..|.. +..+++++|.+. .|++.+++.. . +. .
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~--~~~~V~~~~r~~-------------------~~~~~~~~~~---g--~~--~- 53 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIV--SSNQIICSDLNT-------------------ANLKNASEKY---G--LT--T- 53 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSS--CGGGEEEECSCH-------------------HHHHHHHHHH---C--CE--E-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCC--CCCeEEEEeCCH-------------------HHHHHHHHHh---C--CE--E-
Confidence 5899999999999999999999851 114777776421 2333333221 1 11 1
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRC 636 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c 636 (1104)
..+. .+..++.|+||-|+.....+..+....
T Consensus 54 ----~~~~-----~e~~~~aDvVilav~~~~~~~v~~~l~ 84 (247)
T 3gt0_A 54 ----TTDN-----NEVAKNADILILSIKPDLYASIINEIK 84 (247)
T ss_dssp ----CSCH-----HHHHHHCSEEEECSCTTTHHHHC---C
T ss_pred ----eCCh-----HHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1111 234678999999996655565555443
No 234
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=87.78 E-value=0.81 Score=50.35 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=52.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++|+|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+..... +
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~ 81 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA------RLVLSDVD-------------------QPALEQAVNGLRGQGF--D 81 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHTTC--C
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEECC-------------------HHHHHHHHHHHHhcCC--c
Confidence 5678999998 68999999999999998 78887643 2344445555555443 4
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..+. .+.+...|+||++.
T Consensus 82 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnA 116 (301)
T 3tjr_A 82 AHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNA 116 (301)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred eEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 5555555554221 1111 01134678888774
No 235
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=87.70 E-value=0.71 Score=49.98 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=56.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|+++.++|-| .+|||-++++.|+..|. ++.++|.+ +.+.+.+++.++....
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga------~Vv~~~~~-------------------~~~~~~~~~~i~~~g~-- 56 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS------IVVAVELL-------------------EDRLNQIVQELRGMGK-- 56 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC------EEEEEECC-------------------HHHHHHHHHHHHhcCC--
Confidence 58889999998 78999999999999997 88888732 2356666777776654
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNA 622 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~a 622 (1104)
++..+..++.+..+ .+++ .+-|...|++||+
T Consensus 57 ~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNN 91 (254)
T 4fn4_A 57 EVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNN 91 (254)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 45566666664321 1111 1234567777765
No 236
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=87.70 E-value=2.1 Score=46.25 Aligned_cols=32 Identities=22% Similarity=0.096 Sum_probs=29.2
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+|.|||+|.+|+.+|..|...|. .++++|.+.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence 69999999999999999999996 899998754
No 237
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=87.68 E-value=0.75 Score=49.19 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=43.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+++++++|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.++...+ +
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~ 57 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF------TVFAGRRNG-------------------EKLAPLVAEIEAAGG--R 57 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC------EEEEEESSG-------------------GGGHHHHHHHHHTTC--E
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHhcCC--e
Confidence 5678899998 77999999999999998 788887432 234445555555443 5
Q ss_pred EeeecccCCc
Q 001301 593 TEALQIRANP 602 (1104)
Q Consensus 593 i~~~~~~v~~ 602 (1104)
+..+..++.+
T Consensus 58 ~~~~~~Dv~~ 67 (252)
T 3h7a_A 58 IVARSLDARN 67 (252)
T ss_dssp EEEEECCTTC
T ss_pred EEEEECcCCC
Confidence 5566555554
No 238
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=87.64 E-value=2 Score=48.54 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCc-ccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVEL-WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~-sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
++..+|||.|+ |.+|..+++.|+..|..+|+++|...-.. ..+. -.+ .++.+
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~------------------------~~~--~v~~~ 83 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP------------------------DHP--AVRFS 83 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC------------------------CCT--TEEEE
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc------------------------CCC--ceEEE
Confidence 45678999996 77999999999999955788887542211 0010 011 23444
Q ss_pred ecccch-----hhhcCCceEEEecCC--H---------------hHhhhHHHHHHHc-CCCcceEEeeecceeEE
Q 001301 195 TTELTK-----EKLSDFQAVVFTDIS--L---------------EKAVEFDDYCHNH-QPPIAFIKSEVRGLFGN 246 (1104)
Q Consensus 195 ~~~l~~-----e~l~~~dvVV~~~~~--~---------------~~~~~ln~~c~~~-~~~ipfI~~~~~G~~G~ 246 (1104)
..++.+ +.++++|+||.+... . .....+-++|++. +. ..||..++.+.+|.
T Consensus 84 ~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~~V~~SS~~vyg~ 157 (377)
T 2q1s_A 84 ETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL-KKVVYSAAGCSIAE 157 (377)
T ss_dssp CSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSC-CEEEEEEEC-----
T ss_pred ECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeCCHHHcCC
Confidence 444432 245678888876431 1 1134556778777 62 27888877766553
No 239
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=87.64 E-value=0.77 Score=49.37 Aligned_cols=84 Identities=15% Similarity=0.231 Sum_probs=52.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+.....
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~-- 60 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA------DLVLAART-------------------VERLEDVAKQVTDTGR-- 60 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHTTC--
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC------EEEEEeCC-------------------HHHHHHHHHHHHhcCC--
Confidence 46788899998 68999999999999998 78888743 2244455555555433
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..++ .+-+...|++|++.
T Consensus 61 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 61 RALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 45555555554221 1111 01134677777654
No 240
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=87.51 E-value=0.56 Score=49.63 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~------~v~~~~r 37 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA------TVVGTAT 37 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 4577889988 68999999999999997 7888764
No 241
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=87.47 E-value=0.83 Score=50.49 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.6
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|+|.| .|.||+.+++.|+..|. +++++|.+
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~------~V~~~~r~ 46 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGH------DLVLIHRP 46 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC------EEEEEECT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC------EEEEEecC
Confidence 4899999 59999999999999986 78888754
No 242
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=87.44 E-value=1.1 Score=47.97 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=30.1
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeCC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEG 152 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d 152 (1104)
..+|.|||+|.+|+.++++|...|. ..++++|.+
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~ 40 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS 40 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence 3589999999999999999999995 689999864
No 243
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=87.42 E-value=0.56 Score=50.28 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=52.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|++++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+....+ +
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~ 62 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA------SVVVTDLK-------------------SEGAEAVAAAIRQAGG--K 62 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC------EEEEEESS-------------------HHHHHHHHHHHHHTTC--C
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCC--c
Confidence 5678899998 68999999999999998 78888743 1344555566665544 4
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..+. .+-+...|++|++.
T Consensus 63 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 63 AIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4555555554221 1111 01234677777664
No 244
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=87.39 E-value=0.75 Score=49.99 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~------~V~~~~r 64 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGA------QVAVAAR 64 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 36778999998 68999999999999997 7888874
No 245
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=87.35 E-value=0.64 Score=50.69 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=30.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~------~V~~~~r~ 41 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGA------KVVVTARN 41 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC------EEEECCSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 36678888888 68999999999999998 78888743
No 246
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=87.34 E-value=0.45 Score=54.43 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=35.1
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+|++.+|+|+|+|..|..+|+.|+..|+++|+++|.+
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 5788999999999999999999999999999999976
No 247
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=87.31 E-value=1.9 Score=47.53 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=57.8
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|||.|+ |.+|..+++.|+..|. +|++++.+.-....+. . + .++.+..++.
T Consensus 15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~-----------------------~--~--~~~~~~~Dl~ 66 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLA-----------------------Y--L--EPECRVAEML 66 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGG-----------------------G--G--CCEEEECCTT
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhc-----------------------c--C--CeEEEEecCC
Confidence 7999995 7799999999999995 7888776432111110 0 1 2233333332
Q ss_pred h-----hhhcCCceEEEecCC---------------HhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 200 K-----EKLSDFQAVVFTDIS---------------LEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 200 ~-----e~l~~~dvVV~~~~~---------------~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+ +.+++.|+||.+... ......+-+.|++.+. ..||..++.+.+|
T Consensus 67 d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~SS~~~~~ 131 (342)
T 2x4g_A 67 DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARV-PRILYVGSAYAMP 131 (342)
T ss_dssp CHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTC-SCEEEECCGGGSC
T ss_pred CHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEECCHHhhC
Confidence 2 245677888765421 1123456678888772 2688877776654
No 248
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=87.29 E-value=1.2 Score=48.51 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=55.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+++++++|.| .||||.++++.|+..|. +++++|.+.-....+. .+.+.+++.+....+ +
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~------~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~~--~ 66 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGA------NVALVAKSAEPHPKLP------------GTIYTAAKEIEEAGG--Q 66 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTC------EEEEEESCCSCCSSSC------------CCHHHHHHHHHHHTS--E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEECChhhhhhhh------------HHHHHHHHHHHhcCC--c
Confidence 5678899998 68999999999999997 8888886543222211 123444555555543 5
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+...+.+... ..+. .+-+...|++|++.
T Consensus 67 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 101 (285)
T 3sc4_A 67 ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA 101 (285)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 6666666664221 1111 01234678888764
No 249
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=87.28 E-value=1.3 Score=46.31 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=27.1
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEE-ecC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTI-TDD 553 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~i-iD~ 553 (1104)
.+|.|||+|.+|..+++.|+..|. ++++ +|.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~------~V~~v~~r 55 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQI------PAIIANSR 55 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTC------CEEEECTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------EEEEEECC
Confidence 689999999999999999999987 6666 653
No 250
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=87.27 E-value=2.1 Score=47.97 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=62.3
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHH--hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE
Q 001301 117 LFASNILISGM-QGLGAEIAKNLIL--AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA 193 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvl--aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~ 193 (1104)
|...+|||.|+ |++|..+++.|+. .|. +|+++|...-...-..+ ..+.++.. ..+. ...+..
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~----~~~~~~~~---------~~~~-~~~~~~ 72 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNN----RPSSLGHF---------KNLI-GFKGEV 72 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCCCCG---------GGGT-TCCSEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCcccccccc----chhhhhhh---------hhcc-ccCceE
Confidence 56789999975 7799999999999 776 67777653210000000 00001110 0111 112333
Q ss_pred eecccch-----hh-hcCCceEEEecC-------CH--------hHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 194 LTTELTK-----EK-LSDFQAVVFTDI-------SL--------EKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 194 ~~~~l~~-----e~-l~~~dvVV~~~~-------~~--------~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
+..++.+ +. ..+.|+||-+.. +. .....+-+.|++.+ ++||.+++.+.+|
T Consensus 73 ~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~~~V~~SS~~vyg 143 (362)
T 3sxp_A 73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK--AKVIYASSAGVYG 143 (362)
T ss_dssp EECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEEEGGGGC
T ss_pred EECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC--CcEEEeCcHHHhC
Confidence 4444422 12 457788886542 11 22345667888888 7799988877765
No 251
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=87.25 E-value=0.94 Score=49.19 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|.+++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~------~V~~~~~~ 44 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA------DIIAVDIC 44 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEECC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEecc
Confidence 46778999998 67999999999999998 88998865
No 252
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=87.18 E-value=0.75 Score=49.85 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=43.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.++...+
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~~-- 75 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA------RILINGTD-------------------PSRVAQTVQEFRNVGH-- 75 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEECCSC-------------------HHHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhcCC--
Confidence 36778899988 68999999999999997 78887642 2344455555655444
Q ss_pred EEeeecccCCc
Q 001301 592 NTEALQIRANP 602 (1104)
Q Consensus 592 ~i~~~~~~v~~ 602 (1104)
++..+..++.+
T Consensus 76 ~~~~~~~Dv~d 86 (271)
T 4ibo_A 76 DAEAVAFDVTS 86 (271)
T ss_dssp CEEECCCCTTC
T ss_pred ceEEEEcCCCC
Confidence 34555555553
No 253
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=87.17 E-value=1.5 Score=47.59 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=44.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
.+|.|||+|.+|..++++|.. |. +++++|.+. .+++.+.+. .+.+ .. .
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~-------------------~~~~~~~~~------g~~~--~~---~ 49 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTF-------------------EKALRHQEE------FGSE--AV---P 49 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSST-------------------HHHHHHHHH------HCCE--EC---C
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCH-------------------HHHHHHHHC------CCcc--cC---H
Confidence 379999999999999999999 97 588877421 233332221 1221 11 3
Q ss_pred hhhhcCCceEEEecCCHh
Q 001301 200 KEKLSDFQAVVFTDISLE 217 (1104)
Q Consensus 200 ~e~l~~~dvVV~~~~~~~ 217 (1104)
.+.+.++|+||.|..+..
T Consensus 50 ~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 50 LERVAEARVIFTCLPTTR 67 (289)
T ss_dssp GGGGGGCSEEEECCSSHH
T ss_pred HHHHhCCCEEEEeCCChH
Confidence 456678999999987554
No 254
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=87.14 E-value=0.8 Score=48.77 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~------~V~~~~r 38 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGA------TVIVSDI 38 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEECS
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46788999998 58999999999999997 7888764
No 255
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=87.14 E-value=1.8 Score=48.62 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=48.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHH----HhCCCcEEEEee
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQ----ELNNAVAISALT 195 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~----eLNp~V~V~~~~ 195 (1104)
.+|.|+|+|.+|..+|..|+..|.-.++|+|.+. .|++..+..+. .+....++....
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~~i~~t~ 70 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK-------------------GMPEGKALDLSHVTSVVDTNVSVRAEY 70 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh-------------------hHHHHHHHHHHhhhhccCCCCEEEEeC
Confidence 5899999999999999999999984599998642 12332222222 222334454432
Q ss_pred cccchhhhcCCceEEEec
Q 001301 196 TELTKEKLSDFQAVVFTD 213 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~ 213 (1104)
++. +-+++.|+||.+.
T Consensus 71 -d~~-ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 71 -SYE-AALTGADCVIVTA 86 (331)
T ss_dssp -SHH-HHHTTCSEEEECC
T ss_pred -CHH-HHhCCCCEEEEcc
Confidence 222 2578999999886
No 256
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=87.13 E-value=1.3 Score=48.89 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=28.9
Q ss_pred CeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISG-MQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~ 54 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE 54 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 5799999 99999999999999997 78888854
No 257
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=87.08 E-value=1 Score=49.76 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=28.2
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
|++.+|||.|+ |++|.++++.|+..|. +|+++|..
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~ 36 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRR 36 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 34678999997 7899999999999995 77777753
No 258
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=87.04 E-value=0.99 Score=51.64 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=32.6
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+..++|+|+|+|++|..+++.+...|. +|+++|.
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~ 199 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI 199 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 5789999999999999999999999999 7999885
No 259
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=87.04 E-value=1.4 Score=49.87 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=54.4
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHH-hCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
....+|+|||+|+.|..++..|.. .++.+|+++|.+ ..|++..++.+.+. +.+.+....
T Consensus 127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~~ 186 (350)
T 1x7d_A 127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRAS 186 (350)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEECS
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEeC
Confidence 346799999999999999999864 578999998742 23677766666442 344444332
Q ss_pred cccchhhhcCCceEEEecCC
Q 001301 196 TELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~~ 215 (1104)
. .++.+.+.|+||.|+.+
T Consensus 187 ~--~~eav~~aDiVi~aTps 204 (350)
T 1x7d_A 187 S--VAEAVKGVDIITTVTAD 204 (350)
T ss_dssp S--HHHHHTTCSEEEECCCC
T ss_pred C--HHHHHhcCCEEEEeccC
Confidence 1 23567889999998864
No 260
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=87.04 E-value=1.3 Score=48.82 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|+|+|.+|..++..|+..|.. ++|+++|-+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~----~~v~L~D~~ 34 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV----DEIALVDIA 34 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC----SEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CeEEEEECC
Confidence 4799999999999999999999872 589999843
No 261
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=87.03 E-value=2 Score=47.64 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=47.7
Q ss_pred eEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH----hCCCcEEEEee
Q 001301 121 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE----LNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e----LNp~V~V~~~~ 195 (1104)
+|.|+|+|.+|..+|..|+..|. ..++++|.+. .|++.....+.+ .....++....
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~~i~~t~ 62 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE-------------------GIPQGKALDMYESGPVGLFDTKVTGSN 62 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------hHHHHHHHhHHhhhhcccCCcEEEECC
Confidence 79999999999999999998763 5799998642 122222222221 23345555433
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
+ . ++ +++.|+||.+..
T Consensus 63 d-~-~~-l~~aDvViiav~ 78 (310)
T 1guz_A 63 D-Y-AD-TANSDIVIITAG 78 (310)
T ss_dssp C-G-GG-GTTCSEEEECCS
T ss_pred C-H-HH-HCCCCEEEEeCC
Confidence 2 2 23 889999999874
No 262
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=87.03 E-value=0.92 Score=50.26 Aligned_cols=31 Identities=26% Similarity=0.087 Sum_probs=27.0
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..+|+|+|+|++|+.++..|. +|. .+++++.
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r 32 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTR 32 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEEC
Confidence 358999999999999999999 884 7888774
No 263
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=86.98 E-value=0.49 Score=51.58 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=52.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.+.+++++|.| .||||.++++.|+..|. +++++|... ..+.+.+++.+....+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~~~~------------------~~~~~~~~~~~~~~~~-- 79 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF------DIAITGIGD------------------AEGVAPVIAELSGLGA-- 79 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESCC------------------HHHHHHHHHHHHHTTC--
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC------eEEEEeCCC------------------HHHHHHHHHHHHhcCC--
Confidence 46677899998 68999999999999998 788887311 1234445555555443
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..++ .+-+...|++|++.
T Consensus 80 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 80 RVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp CEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45566666654321 1111 01234678777664
No 264
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=86.98 E-value=1.1 Score=48.04 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 39 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA------RLLLFSR 39 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 4567899998 68999999999999997 7888764
No 265
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=86.97 E-value=0.92 Score=49.26 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=32.6
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 509 KLQKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.....|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 26 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~------~V~~~~r 65 (275)
T 4imr_A 26 ETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA------HVILHGV 65 (275)
T ss_dssp HHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcC
Confidence 444567888999998 68999999999999998 7888774
No 266
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=86.95 E-value=0.73 Score=49.57 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=52.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|.+++++|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.+.+.. ..+
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~ 61 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA------NVAVAGRST-------------------ADIDACVADLDQLG-SGK 61 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHTTS-SSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHhhC-CCc
Confidence 5678888888 78999999999999997 788887432 23444555555433 235
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..++ .+-+...|++|++.
T Consensus 62 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 96 (262)
T 3pk0_A 62 VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA 96 (262)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 5666666654221 1111 01134677777664
No 267
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=86.94 E-value=1.5 Score=48.76 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=28.8
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
||.|||+|.+|..++..|+..|+ +.|+++|-|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l-----~el~L~Di~ 32 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY-----DDLLLIART 32 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-----SCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-----CEEEEEcCC
Confidence 68999999999999999998888 689999854
No 268
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=86.92 E-value=0.84 Score=49.36 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=51.3
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
.+++++|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.+.... .++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~ 55 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA------KILLGARRQ-------------------ARIEAIATEIRDAG--GTA 55 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC------EEEEEESSH-------------------HHHHHHHHHHHHTT--CEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC------EEEEEECCH-------------------HHHHHHHHHHHhcC--CcE
Confidence 467888888 58999999999999998 788886431 34455556665543 355
Q ss_pred eeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 594 EALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 594 ~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
..+..++.+... ..+. .+-+...|++|++.
T Consensus 56 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 56 LAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 555555554221 1111 11234677777764
No 269
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=86.81 E-value=0.84 Score=54.94 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=64.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
.+|+|+|+|-+|..+++.|...|. .++++|.|.-....+. ..+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~------~v~vid~d~~~~~~~~-------------------------------~~i 391 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV------PFILIDRQESPVCNDH-------------------------------VVV 391 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC------CEEEEESSCCSSCCSS-------------------------------CEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC------CEEEEECChHHHhhcC-------------------------------CEE
Confidence 799999999999999999999998 8999998754322211 122
Q ss_pred cccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccc
Q 001301 597 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKP 642 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~p 642 (1104)
..+..+ +..+...-.+++|.+|.++++.++...+...+++.+.+
T Consensus 392 ~gD~t~--~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~ 435 (565)
T 4gx0_A 392 YGDATV--GQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSH 435 (565)
T ss_dssp ESCSSS--STHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred EeCCCC--HHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence 222222 23344455789999999999999998888888887653
No 270
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=86.80 E-value=3.2 Score=46.10 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.5
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVK-SVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~ 151 (1104)
..+|.|||+|.+|..+|+.|...|.. .|+++|.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr 66 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI 66 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 36899999999999999999999974 7888875
No 271
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=86.79 E-value=2 Score=44.22 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=27.1
Q ss_pred eEEEEc-CChhhHHHHHHHHHhCCceEEEEeC
Q 001301 121 NILISG-MQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+|+|+| +|.+|..+++.|...|. +++++|.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r 32 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSR 32 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 699999 99999999999999996 6888875
No 272
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=86.77 E-value=0.98 Score=51.44 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=32.2
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+...+|+|+|+|++|..+++.+...|. +++++|.
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~ 197 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV 197 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 4778999999999999999999999999 7999885
No 273
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=86.74 E-value=2.4 Score=45.58 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=57.6
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|+|.|+ |++|..+++.|...+-.+|++++.+.-....+ ..+. ++.+..+++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~~--v~~~~~D~~ 54 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRGK--VSVRQLDYF 54 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBTT--BEEEECCTT
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhCC--CEEEEcCCC
Confidence 6999996 77999999999887334666665532111110 0122 333444443
Q ss_pred h-----hhhcCCceEEEecCC-------HhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 K-----EKLSDFQAVVFTDIS-------LEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~-----e~l~~~dvVV~~~~~-------~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
+ ..+++.|+||.+... ......+-+.|++.+. ..||..++.|
T Consensus 55 d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv-~~iv~~Ss~~ 108 (289)
T 3e48_A 55 NQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGV-AHIIFIGYYA 108 (289)
T ss_dssp CHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTC-CEEEEEEESC
T ss_pred CHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCC-CEEEEEcccC
Confidence 2 356788999987542 2344567788888882 2577776654
No 274
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=86.70 E-value=1.3 Score=52.23 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=64.8
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhc---ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALM---GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH 590 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~---Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~ 590 (1104)
..++|+|.| .|.||+++++.|+.. |. ++++++...-....+.|. - +.............-....
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~------~V~~l~R~~~~~~~~~~l--~--~~~~~~~~~~~~~~~~~~~-- 139 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDG------RLICLVRAESDEDARRRL--E--KTFDSGDPELLRHFKELAA-- 139 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTC------EEEEEECSSSHHHHHHHH--H--GGGCSSCHHHHHHHHHHHT--
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCC------EEEEEECCCCcHHHHHHH--H--HHHHhcchhhhhhhhhhcc--
Confidence 467999999 589999999999998 54 788876432111101000 0 0000000000000001111
Q ss_pred cEEeeecccCCccc----cccchhhhhccCCEEEEccC-------------CHHHHHHHhhccccccc-ceEecccCCc
Q 001301 591 LNTEALQIRANPET----ENVFNDTFWENLNVVVNALD-------------NVNARLYIDQRCLYFQK-PLLESGTLGA 651 (1104)
Q Consensus 591 ~~i~~~~~~v~~~~----~~~~~~~f~~~~DvVi~alD-------------n~~aR~~i~~~c~~~~~-pli~~g~~G~ 651 (1104)
-+++.+...+.... ...+ ...+++.|+||+|.- |+..-..+-+.|...++ .+|..++.+.
T Consensus 140 ~~v~~v~~Dl~~~~~gld~~~~-~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v 217 (478)
T 4dqv_A 140 DRLEVVAGDKSEPDLGLDQPMW-RRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADV 217 (478)
T ss_dssp TTEEEEECCTTSGGGGCCHHHH-HHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGG
T ss_pred CceEEEEeECCCcccCCCHHHH-HHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhh
Confidence 25566666665321 0111 245678999998753 33444556667777664 6665555443
No 275
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=86.70 E-value=0.8 Score=51.16 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=48.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC---CcEEEEe
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVAISAL 194 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp---~V~V~~~ 194 (1104)
..+|.|+|+|.+|..++-.|+..|. +.|.|+|-+. .|++..+..|.+..| .+++..
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~i~~- 66 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK-------------------EKAIGEAMDINHGLPFMGQMSLYA- 66 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC----------------------CCHHHHHHTTSCCCTTCEEEC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------HHHHHHHHHHHHhHHhcCCeEEEE-
Confidence 4689999999999999999999885 6899999642 112222233433322 344443
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+-+++.|+||.+..
T Consensus 67 -~--~~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 67 -G--DYSDVKDCDVIVVTAG 83 (318)
T ss_dssp ----CGGGGTTCSEEEECCC
T ss_pred -C--CHHHhCCCCEEEEcCC
Confidence 2 2445889999999875
No 276
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=86.67 E-value=0.97 Score=50.50 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=58.4
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
..+|+|+|+|.+|..+++.|...|. ++++|.|.- +++ +++ ..+ .++..+.
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~-------------------~~~-----~~~--~~~--~~i~gd~ 164 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDENV-------------------RKK-----VLR--SGA--NFVHGDP 164 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGG-------------------HHH-----HHH--TTC--EEEESCT
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChh-------------------hhh-----HHh--CCc--EEEEeCC
Confidence 5689999999999999999999987 888886431 222 222 223 3333333
Q ss_pred c-h-----hhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 199 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 199 ~-~-----e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
+ + .-++++|.||.+..+.+....+...+++.++
T Consensus 165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~ 203 (336)
T 1lnq_A 165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE 203 (336)
T ss_dssp TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence 2 2 2366789999988877777778888898884
No 277
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=86.63 E-value=2.1 Score=47.77 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=29.3
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+.-.+|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~~~kI~vIGaG~MG~~iA~~la~~G~-~V~l~d~~ 38 (319)
T 2dpo_A 4 PAAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIE 38 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred CCCceEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 345789999999999999999999998 68888864
No 278
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=86.45 E-value=1.7 Score=49.91 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=59.7
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHh
Q 001301 509 KLQKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 587 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~ 587 (1104)
.....+++++|+|.| .|+||+++++.|+..|. .+++++|.. ..+...+.+.+...
T Consensus 28 ~~~~~~~~k~vLVTGatG~IG~~l~~~L~~~g~-----~~V~~~~r~-------------------~~~~~~~~~~l~~~ 83 (399)
T 3nzo_A 28 ELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP-----QKLHVVDIS-------------------ENNMVELVRDIRSS 83 (399)
T ss_dssp HHHHHHHTCEEEEETTTSHHHHHHHHHHHTTCC-----SEEEEECSC-------------------HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEcCChHHHHHHHHHHHHCCC-----CEEEEEECC-------------------cchHHHHHHHHHHh
Confidence 344568899999999 58899999999999996 588888632 22333444555555
Q ss_pred CC--CcEEeeecccCCccccccchhhhh--ccCCEEEEccC
Q 001301 588 NP--HLNTEALQIRANPETENVFNDTFW--ENLNVVVNALD 624 (1104)
Q Consensus 588 np--~~~i~~~~~~v~~~~~~~~~~~f~--~~~DvVi~alD 624 (1104)
.+ ..+++.+...+.+... . ..++ .+.|+||++..
T Consensus 84 ~~~~~~~v~~~~~Dl~d~~~--~-~~~~~~~~~D~Vih~Aa 121 (399)
T 3nzo_A 84 FGYINGDFQTFALDIGSIEY--D-AFIKADGQYDYVLNLSA 121 (399)
T ss_dssp TCCCSSEEEEECCCTTSHHH--H-HHHHHCCCCSEEEECCC
T ss_pred cCCCCCcEEEEEEeCCCHHH--H-HHHHHhCCCCEEEECCC
Confidence 44 3577777777765321 1 1222 58999998753
No 279
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=86.43 E-value=1.5 Score=46.65 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=42.6
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC-cEEEE
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA-VAISA 193 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~-V~V~~ 193 (1104)
.++++.|+|.|. ||+|.++|+.|+..|. ++.++|.+ ..+++.+.+.+.+.++. .++..
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIV 63 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEE
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceE
Confidence 356788999985 6899999999999998 67777642 23566667777777654 34444
Q ss_pred ee
Q 001301 194 LT 195 (1104)
Q Consensus 194 ~~ 195 (1104)
+.
T Consensus 64 ~~ 65 (250)
T 3nyw_A 64 LP 65 (250)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 280
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=86.38 E-value=1.6 Score=48.56 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|||+|.+|..++..|+..|.. ++|+++|-|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~~~~----~ev~l~Di~ 40 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQGIA----DEIVLIDAN 40 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC----SEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC----CEEEEEeCC
Confidence 5899999999999999999988862 689999843
No 281
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=86.38 E-value=2.6 Score=45.46 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=27.3
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
+|.|||+|.+|..+++.|...|. +++++|.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~ 31 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSR 31 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999997 6888874
No 282
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=86.37 E-value=0.55 Score=53.82 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=35.7
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
+++..+|+|+|+|..|..+|+.|+.+|+++|+++|..-
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 57789999999999999999999999999999999874
No 283
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=86.36 E-value=1 Score=48.19 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=30.7
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+.+++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r~ 41 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGA------TVAIADID 41 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 46678899998 68999999999999997 78888743
No 284
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=86.36 E-value=1.3 Score=50.10 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=61.2
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.||.||| .|.+|.|+++.|...-. .+|+.+. ..+..|+. +.+..|+..
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~-----~el~~l~---------------S~~~aG~~--------~~~~~p~~~--- 62 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPE-----AKITYLS---------------SRTYAGKK--------LEEIFPSTL--- 62 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTT-----EEEEEEE---------------CSTTTTSB--------HHHHCGGGC---
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCC-----cEEEEEe---------------CcccccCC--------hHHhChhhc---
Confidence 3799998 69999999999997644 5665543 23345543 333455543
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 647 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g 647 (1104)
..-.+.+.+ ..+++.++|+||.|+..-.++.++... .+..+||.+
T Consensus 63 ~~l~~~~~~----~~~~~~~~Dvvf~alp~~~s~~~~~~~---~g~~VIDlS 107 (351)
T 1vkn_A 63 ENSILSEFD----PEKVSKNCDVLFTALPAGASYDLVREL---KGVKIIDLG 107 (351)
T ss_dssp CCCBCBCCC----HHHHHHHCSEEEECCSTTHHHHHHTTC---CSCEEEESS
T ss_pred cCceEEeCC----HHHhhcCCCEEEECCCcHHHHHHHHHh---CCCEEEECC
Confidence 111111100 134558899999999999999998877 577788643
No 285
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=86.29 E-value=1 Score=46.25 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=58.5
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|+|.|+ |++|.++++.|+..|. ++++++.+. .+ +.++.+.+++ +..+++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~-------~~~~~~~~~~--~~~D~~ 52 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA-------------------GK-------ITQTHKDINI--LQKDIF 52 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS-------------------HH-------HHHHCSSSEE--EECCGG
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc-------------------hh-------hhhccCCCeE--Eecccc
Confidence 6999995 7899999999999995 777776531 11 2222244443 344443
Q ss_pred h---hhhcCCceEEEecCC--------HhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 K---EKLSDFQAVVFTDIS--------LEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~---e~l~~~dvVV~~~~~--------~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
+ +.+.++|+||.+... ......+-+.|++.+. ..+|..++.+
T Consensus 53 d~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~-~~~v~~SS~~ 105 (221)
T 3ew7_A 53 DLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVS-PRLLVVGGAA 105 (221)
T ss_dssp GCCHHHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCS-SEEEEECCCC
T ss_pred ChhhhhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCC-ceEEEEecce
Confidence 2 467789999987542 2334566778887752 3566655543
No 286
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=86.28 E-value=1.1 Score=49.52 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=31.8
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
...-.+|.|||+|.+|..+|++|+..|. .++++|.+.
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~ 54 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL 54 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 3344689999999999999999999997 799998754
No 287
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=86.24 E-value=1.3 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=29.2
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~------~V~~~~r 41 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA------SVYTCSR 41 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677899998 68999999999999997 7888764
No 288
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=86.22 E-value=2.2 Score=47.62 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE---
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA--- 193 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~--- 193 (1104)
|...+|+|||+|.+|+.++..|...| ..++++| |-....+.+++.. .+.+..
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g-~~V~~~~-----------------------r~~~~~~~~~~~~-~~~~~~~~~ 56 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKG-QSVLAWD-----------------------IDAQRIKEIQDRG-AIIAEGPGL 56 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC-----------------------SCHHHHHHHHHHT-SEEEESSSC
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCC-CEEEEEe-----------------------CCHHHHHHHHhcC-CeEEecccc
Q ss_pred -------eecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 194 -------LTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 194 -------~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
....-.++.+.++|+||.|.-+......+..+.........+|.....|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~~ 112 (359)
T 1bg6_A 57 AGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGAT 112 (359)
T ss_dssp CEEECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred ccccccceecCCHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCCc
No 289
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=86.22 E-value=1.5 Score=49.27 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 115 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 115 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..|...+|.|||+|.+|..+|++|...|+ +++++|.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~ 47 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLR 47 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEEC
Confidence 35677899999999999999999999997 5777775
No 290
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=86.19 E-value=0.87 Score=48.98 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=52.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|++++++|.| .||||.++++.|+..|. +++++|... ....+.+.+++.+.... .+
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~------~V~~~~r~~----------------~~~~~~~~~~~~~~~~~--~~ 64 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESV------NLVLHYHQA----------------KDSDTANKLKDELEDQG--AK 64 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSC------EEEEEESCG----------------GGHHHHHHHHHHHHTTT--CE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEecCc----------------cCHHHHHHHHHHHHhcC--Cc
Confidence 5678899998 68999999999999997 777775321 12234445555555443 45
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
+..+..++.+... .+++ .+-+...|++|++.
T Consensus 65 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 99 (262)
T 3ksu_A 65 VALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTV 99 (262)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 6666666664221 1111 01134677777664
No 291
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=86.17 E-value=0.79 Score=50.93 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH 590 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~ 590 (1104)
..+.+++++|.| .||||.++++.|+..|. +++++|.+.- +.|. ..-...+.+.+++.+....+
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~------~Vv~~~r~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~- 86 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGA------RVVVNDIGVG----LDGS-----PASGGSAAQSVVDEITAAGG- 86 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEECCCBC----TTSS-----BTCTTSHHHHHHHHHHHTTC-
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeCccc----cccc-----ccccHHHHHHHHHHHHhcCC-
Confidence 357788899998 68999999999999997 8899886531 1111 11223455566666666543
Q ss_pred cEEeeecccCCc
Q 001301 591 LNTEALQIRANP 602 (1104)
Q Consensus 591 ~~i~~~~~~v~~ 602 (1104)
++..+..++.+
T Consensus 87 -~~~~~~~Dv~d 97 (322)
T 3qlj_A 87 -EAVADGSNVAD 97 (322)
T ss_dssp -EEEEECCCTTS
T ss_pred -cEEEEECCCCC
Confidence 55566655554
No 292
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=86.17 E-value=2.4 Score=46.30 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEE-------
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA------- 193 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~------- 193 (1104)
+|+|||+|.+|+.+|..|...|. .++++| |-....+.+++. ...+..
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-----------------------r~~~~~~~~~~~--g~~~~~~~~~~~~ 58 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLID-----------------------QWPAHIEAIRKN--GLIADFNGEEVVA 58 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEC-----------------------SCHHHHHHHHHH--CEEEEETTEEEEE
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-cEEEEE-----------------------CCHHHHHHHHhC--CEEEEeCCCeeEe
Q ss_pred -eecccchhhhc---CCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 194 -LTTELTKEKLS---DFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 194 -~~~~l~~e~l~---~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
....-..+... ++|+||.|.-+......+..+....++...+|.... |+
T Consensus 59 ~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~-g~ 111 (316)
T 2ew2_A 59 NLPIFSPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLN-GL 111 (316)
T ss_dssp CCCEECGGGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCS-SS
T ss_pred cceeecchhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecC-CC
No 293
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=86.16 E-value=0.96 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~------~V~~~~r 39 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA------KVVVNYR 39 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEcC
Confidence 36678899997 79999999999999997 7888764
No 294
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=86.08 E-value=0.99 Score=48.24 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 46 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGA------HVVVSSR 46 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46678899998 78999999999999997 7888764
No 295
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=86.07 E-value=1.6 Score=48.92 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=29.4
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|||+|.+|..++..|+..|. ..++++|-|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~-----~~v~L~Di~ 37 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNL-----GDVVLFDIV 37 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCC
Confidence 589999999999999999999998 459999854
No 296
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=86.06 E-value=0.7 Score=50.57 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=32.3
Q ss_pred HHHHHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 509 KLQKKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 509 ~~q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
...+||+++.++|-| .+|||-++++.|+..|. ++.++|.
T Consensus 22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga------~V~i~~r 61 (273)
T 4fgs_A 22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAEGA------RVFITGR 61 (273)
T ss_dssp ---CTTTTCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred hhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 334578999999998 68999999999999998 8999874
No 297
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=86.02 E-value=1.6 Score=46.61 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=29.3
Q ss_pred hhcCeEEEEcC-C-hhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISGM-Q-GLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~-g-glGseiaKnLvlaGVg~itLvD~ 151 (1104)
|++++|+|.|. | |+|.++++.|+..|.. +.++|.
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r 55 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDY 55 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence 66789999998 6 8999999999999974 777764
No 298
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=86.00 E-value=1.8 Score=46.67 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.+.-. ..+.. . .-...+.+.+++.+....+
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~~-- 74 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGA------DIIAVDLCDQI-ASVPY----P--LATPEELAATVKLVEDIGS-- 74 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEECCSCC-TTCSS----C--CCCHHHHHHHHHHHHHHTC--
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEeccccc-ccccc----c--ccchHHHHHHHHHHHhcCC--
Confidence 46788999998 68999999999999998 78888854210 00000 0 0012334444555555554
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..+. .+-+...|++|++.
T Consensus 75 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA 110 (278)
T 3sx2_A 75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANA 110 (278)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45566666654221 1111 01134678887764
No 299
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=85.98 E-value=2.8 Score=46.78 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=56.3
Q ss_pred CeEEEEcCChhhHH-HHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 120 SNILISGMQGLGAE-IAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 120 s~VlIiG~gglGse-iaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
++|.++|+||.|.. +|+.|...|. .+++.|...-. + ..+.|++. .+.+.. . .
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~-----------------~----~~~~L~~~--gi~v~~--g-~ 57 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYP-----------------P----MSTQLEAL--GIDVYE--G-F 57 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCT-----------------T----HHHHHHHT--TCEEEE--S-C
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCc-----------------H----HHHHHHhC--CCEEEC--C-C
Confidence 58999999999996 8999999997 68888863210 0 12356654 345432 2 2
Q ss_pred chhhh--cCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEE
Q 001301 199 TKEKL--SDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 237 (1104)
Q Consensus 199 ~~e~l--~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~ 237 (1104)
..+.+ .++|+||.+.. +.+ .-.-..++++| +|++.
T Consensus 58 ~~~~l~~~~~d~vV~Spgi~~~--~p~~~~a~~~g--i~v~~ 95 (326)
T 3eag_A 58 DAAQLDEFKADVYVIGNVAKRG--MDVVEAILNLG--LPYIS 95 (326)
T ss_dssp CGGGGGSCCCSEEEECTTCCTT--CHHHHHHHHTT--CCEEE
T ss_pred CHHHcCCCCCCEEEECCCcCCC--CHHHHHHHHcC--CcEEe
Confidence 23334 47999998754 222 12234578889 88875
No 300
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=85.98 E-value=1.1 Score=48.88 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.++.++|.| .||||.++++.|+..|. +++++|.
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~r 60 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGV------TVGALGR 60 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46778899998 68999999999999998 7888874
No 301
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=85.97 E-value=0.51 Score=52.36 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|+|+|+|++|+.++..|..+|. .+++++.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence 589999999999999999999995 78888764
No 302
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=85.95 E-value=0.85 Score=48.21 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++|+|.| .|+||.++++.|+..|. +++++|
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~------~V~~~~ 42 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA------SVVVSD 42 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC------EEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEc
Confidence 5678899998 68999999999999997 788876
No 303
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*
Probab=85.86 E-value=0.85 Score=48.74 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=45.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHh---cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLAL---MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP 589 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~---~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np 589 (1104)
|++++++|.| .||||.++++.|+. .|. +++++|.+. .+.+.+++.+...+|
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~------~V~~~~r~~-------------------~~~~~~~~~l~~~~~ 58 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS------VMLVSARSE-------------------SMLRQLKEELGAQQP 58 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC------EEEEEESCH-------------------HHHHHHHHHHHHHCT
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCC
Confidence 4566788887 78999999999999 787 788876321 234455666666666
Q ss_pred CcEEeeecccCCc
Q 001301 590 HLNTEALQIRANP 602 (1104)
Q Consensus 590 ~~~i~~~~~~v~~ 602 (1104)
..++..+..++.+
T Consensus 59 ~~~~~~~~~Dv~~ 71 (259)
T 1oaa_A 59 DLKVVLAAADLGT 71 (259)
T ss_dssp TSEEEEEECCTTS
T ss_pred CCeEEEEecCCCC
Confidence 6677777666664
No 304
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=85.86 E-value=1.4 Score=48.30 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=28.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~d~~ 35 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV 35 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred CEEEEEeecHHHHHHHHHHHhCCC-eEEEEcCC
Confidence 589999999999999999999997 78888753
No 305
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=85.80 E-value=1.2 Score=48.21 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
+|.+++++|.| .||||.++++.|+..|. +++++|.+.-..+.+.+ ... ...+.+.+++.+...++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~------~V~~~~r~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-- 73 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA------DIIAVDIAGKLPSCVPY----DPA--SPDDLSETVRLVEAANR-- 73 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEECCSCCCTTCCS----CCC--CHHHHHHHHHHHHHTTC--
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC------EEEEEeccccccccccc----ccc--CHHHHHHHHHHHHhcCC--
Confidence 46788899998 68999999999999998 88898864322221111 111 12334444455555444
Q ss_pred EEeeecccCCcccc--ccchh--hhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFND--TFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~~--~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..++. +-+...|++|++.
T Consensus 74 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA 109 (277)
T 3tsc_A 74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA 109 (277)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45555555554221 11110 1134577777664
No 306
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=85.80 E-value=4.5 Score=47.44 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~ 69 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESD 69 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 78898863
No 307
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=85.78 E-value=1.2 Score=50.33 Aligned_cols=37 Identities=35% Similarity=0.644 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++.++|+|.|+ |.||..+++.|+..|. -+++++|..
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~-----~~V~~~~r~ 66 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGV-----NQVHVVDNL 66 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-----SEEEEECCC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCC-----ceEEEEECC
Confidence 356789999995 9999999999999982 278887643
No 308
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=85.72 E-value=1.3 Score=46.88 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.2
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~------~V~~~~r 39 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA------KVGLHGR 39 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEECC
Confidence 5678899998 69999999999999997 7888764
No 309
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=85.71 E-value=1.9 Score=46.26 Aligned_cols=64 Identities=19% Similarity=0.400 Sum_probs=46.9
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+|++++|+|.|. ||+|.++|+.|+..|. ++.++|.+ ..+.+...+.+.+..+...+..+
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 66 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPV 66 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence 356778888885 7899999999999997 57777642 23566677778888777776665
Q ss_pred ecccc
Q 001301 195 TTELT 199 (1104)
Q Consensus 195 ~~~l~ 199 (1104)
..+++
T Consensus 67 ~~D~~ 71 (267)
T 3t4x_A 67 VADLG 71 (267)
T ss_dssp ECCTT
T ss_pred ecCCC
Confidence 55443
No 310
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=85.71 E-value=0.48 Score=52.12 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++++|+|+||.|..++..|+..|+ ++|+|++
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~-----~~v~v~n 153 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFA-----KDIYVVT 153 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTC-----SEEEEEE
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe
Confidence 568899999999999999999999999 8999986
No 311
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=85.68 E-value=1.4 Score=48.05 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=29.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+|.|||+|.+|..++++|...|. .++++|.+.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 589999999999999999999995 788988654
No 312
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=85.67 E-value=2.4 Score=47.87 Aligned_cols=32 Identities=28% Similarity=0.246 Sum_probs=27.6
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|||.|+ |++|..+++.|+..|. +|+++|.+
T Consensus 30 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~ 62 (379)
T 2c5a_A 30 LKISITGAGGFIASHIARRLKHEGH-YVIASDWK 62 (379)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence 58999997 7799999999999995 78887764
No 313
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=85.66 E-value=2 Score=44.20 Aligned_cols=92 Identities=21% Similarity=0.109 Sum_probs=57.8
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|+|.|+ |++|.++++.|+..|. ++++++.+.- +.. .+ ..+.++ .+..+++
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------------~~~----~~--~~~~~~--~~~~D~~ 53 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQ-------------------KAA----DR--LGATVA--TLVKEPL 53 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHH-------------------HHH----HH--TCTTSE--EEECCGG
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccc-------------------ccc----cc--cCCCce--EEecccc
Confidence 6999997 7899999999999996 6777664211 111 11 123333 3444443
Q ss_pred h---hhhcCCceEEEecCC----------HhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 200 K---EKLSDFQAVVFTDIS----------LEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 200 ~---e~l~~~dvVV~~~~~----------~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
+ +.+.++|+||.+... ......+-+.|++.+ ..+|..++.|
T Consensus 54 d~~~~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~ 107 (224)
T 3h2s_A 54 VLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSD--TLAVFILGSA 107 (224)
T ss_dssp GCCHHHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCC--CEEEEECCGG
T ss_pred cccHhhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcC--CcEEEEecce
Confidence 2 467789999977532 233445566777777 5777766554
No 314
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=85.65 E-value=1.8 Score=48.34 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=49.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhC---CCcEE
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN---PHLNT 593 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~n---p~~~i 593 (1104)
.||.|||+|.+|..++..|+..|.. ..|+++|-| ..|++..+..+.... +.+++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~----~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~v 62 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIA----EEFVIVDVV-------------------KDRTKGDALDLEDAQAFTAPKKI 62 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC----SEEEEECSS-------------------HHHHHHHHHHHHGGGGGSCCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCC----CEEEEEeCC-------------------chHHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999998873 689999732 234444344444332 34455
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
.+ ++ .+-+++.|+||.+..
T Consensus 63 ~~-----~~-------~~a~~~aDvVii~ag 81 (318)
T 1ez4_A 63 YS-----GE-------YSDCKDADLVVITAG 81 (318)
T ss_dssp EE-----CC-------GGGGTTCSEEEECCC
T ss_pred EE-----CC-------HHHhCCCCEEEECCC
Confidence 43 11 123678999999874
No 315
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=85.61 E-value=1 Score=48.03 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=28.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC---ceEEEEeC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV---KSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~ 151 (1104)
.+|.|||+|.+|..++++|...|. ..++++|.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r 37 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL 37 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence 579999999999999999999996 47888774
No 316
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=85.60 E-value=2.2 Score=46.43 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|||.|+ |++|..+++.|+..|. +|+++|..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~ 33 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNL 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence 37999998 7799999999999997 67777653
No 317
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=85.55 E-value=1.1 Score=48.35 Aligned_cols=85 Identities=16% Similarity=0.311 Sum_probs=51.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
+|.+++|+|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+.+.. ..
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r~-------------------~~~~~~~~~~l~~~~-~~ 70 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGA------RLVLSGRD-------------------VSELDAARRALGEQF-GT 70 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEESC-------------------HHHHHHHHHHHHHHH-CC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHHhc-CC
Confidence 35678899998 68999999999999998 78888743 123444455554421 23
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..++ .+-+...|++|++.
T Consensus 71 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 106 (266)
T 4egf_A 71 DVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNA 106 (266)
T ss_dssp CEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEEC
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45566666654321 1111 01234677777653
No 318
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=85.47 E-value=0.73 Score=49.71 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=29.6
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++.+++|+|.| .||||.++++.|+..|. ++++++.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~------~V~~~~r 61 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGL------KVWINYR 61 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 35678899998 68999999999999998 7877764
No 319
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=85.40 E-value=1.3 Score=47.92 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=55.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.+.-....+. +.. -...+.+.+++.+....+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~------~V~~~~r~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~-- 77 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA------DIIACDICAPVSASVT----YAP--ASPEDLDETARLVEDQGR-- 77 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEECCSCCCTTCC----SCC--CCHHHHHHHHHHHHTTTC--
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEecccccccccc----ccc--cCHHHHHHHHHHHHhcCC--
Confidence 47788999998 68999999999999998 8888886431111111 111 112344445555555433
Q ss_pred EEeeecccCCcccc--ccch--hhhhccCCEEEEcc
Q 001301 592 NTEALQIRANPETE--NVFN--DTFWENLNVVVNAL 623 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 623 (1104)
++..+..++.+... ..+. .+-+...|++|++.
T Consensus 78 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45555555553221 1111 01234677777664
No 320
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=85.38 E-value=1.4 Score=46.69 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~------~V~~~~r 39 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA------AVAIAAR 39 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 5678899998 78999999999999997 7888763
No 321
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=85.34 E-value=0.65 Score=50.71 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=28.5
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+++++|+|+||.|..++..|+..|. +|+|++
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~------~v~V~n 148 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL------QVSVLN 148 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC------EEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC------EEEEEe
Confidence 7899999999999999999999995 888875
No 322
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=85.33 E-value=3.7 Score=45.60 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=30.8
Q ss_pred HHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 115 RRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 115 ~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..|.+.+|||.|+ |++|..+++.|...|. +|+++|..
T Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~ 42 (357)
T 1rkx_A 5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT 42 (357)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence 3567789999995 7799999999999996 78887754
No 323
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=85.31 E-value=1.4 Score=47.95 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=30.3
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..|.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~------~V~~~~r 57 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA------NIVLNGF 57 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTC------EEEEECC
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 346778899998 68999999999999997 7888764
No 324
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=85.25 E-value=0.53 Score=47.17 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=29.4
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+|+|||+|.+|++++..|++.|. +++|+|...
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~------~v~lie~~~ 34 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGL------KVLVLDGGR 34 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC------CEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHHCCC------cEEEEeCCC
Confidence 79999999999999999999997 899998754
No 325
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=85.23 E-value=2.6 Score=45.20 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=44.5
Q ss_pred hhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001301 117 LFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 195 (1104)
Q Consensus 117 L~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~ 195 (1104)
|.++.|+|.| .||+|.++|+.|+..|.. +.++|.+ ..+.+.+.+.+.+..+..++..+.
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~ 65 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARD-------------------GERLRAAESALRQRFPGARLFASV 65 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEEe
Confidence 5678899998 468999999999999984 7777642 235666677777766655555544
Q ss_pred ccc
Q 001301 196 TEL 198 (1104)
Q Consensus 196 ~~l 198 (1104)
.++
T Consensus 66 ~Dv 68 (265)
T 3lf2_A 66 CDV 68 (265)
T ss_dssp CCT
T ss_pred CCC
Confidence 443
No 326
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=85.20 E-value=1.2 Score=48.27 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~------~V~~~~r 59 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC------HTVIASR 59 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTC------EEEEEES
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 46788999998 67999999999999997 7888864
No 327
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=85.16 E-value=1.6 Score=51.71 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+.+++|.|||+|.+|+.++.+|+..|. ++++.|.
T Consensus 11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~------~V~v~~r 46 (480)
T 2zyd_A 11 HHMSKQQIGVVGMAVMGRNLALNIESRGY------TVSIFNR 46 (480)
T ss_dssp ----CBSEEEECCSHHHHHHHHHHHTTTC------CEEEECS
T ss_pred cccCCCeEEEEccHHHHHHHHHHHHhCCC------eEEEEeC
Confidence 35678899999999999999999999997 7888764
No 328
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=85.11 E-value=1.3 Score=52.44 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=64.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeecc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTTE 197 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~~ 197 (1104)
..+|.|||+|..|..+|++|+..|. .|+++|.+.-....+...-... ..+ .-+....+.++.+ .+++-+...+..
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~g-~~i--~~~~s~~e~v~~l~~aDvVil~Vp~~ 79 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKG-TKV--VGAQSLKEMVSKLKKPRRIILLVKAG 79 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTT-SSC--EECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcccCC-Cce--eccCCHHHHHhhccCCCEEEEecCCh
Confidence 4589999999999999999999997 7899987543222221110000 000 0001111122222 344444444332
Q ss_pred -cch-------hhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecc
Q 001301 198 -LTK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 242 (1104)
Q Consensus 198 -l~~-------e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G 242 (1104)
..+ ..+..-++||++.- ......++.+.+.+.+ +.|+.+.+.|
T Consensus 80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~G--i~fvd~pVsG 131 (484)
T 4gwg_A 80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG--ILFVGSGVSG 131 (484)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CEEEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhc--cccccCCccC
Confidence 111 13445577777664 4445556667777788 7777765544
No 329
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=85.10 E-value=3.5 Score=49.50 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=60.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec-cc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT-EL 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~-~l 198 (1104)
.+|+|+|+|-+|..+|+.|...|. .++++|.|.-....+. +.+...+... .+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~--------------------------~~i~gD~t~~~~L 401 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV-PFILIDRQESPVCNDH--------------------------VVVYGDATVGQTL 401 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCSSCCSS--------------------------CEEESCSSSSTHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEEECChHHHhhcC--------------------------CEEEeCCCCHHHH
Confidence 899999999999999999999997 5888887654322221 1111111111 12
Q ss_pred chhhhcCCceEEEecCCHhHhhhHHHHHHHcCC
Q 001301 199 TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 231 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 231 (1104)
.+.-+.++|.||++..+.+....+...+++.++
T Consensus 402 ~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~ 434 (565)
T 4gx0_A 402 RQAGIDRASGIIVTTNDDSTNIFLTLACRHLHS 434 (565)
T ss_dssp HHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred HhcCccccCEEEEECCCchHHHHHHHHHHHHCC
Confidence 234577899999999888888888899999984
No 330
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=85.10 E-value=2.6 Score=45.38 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=42.2
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.|.+++|+|.| .||+|.++++.|+..|. +|.++|.+ ..+.+.+.+.+++......+..+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 88 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTLIPY 88 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC-------------------hHHHHHHHHHHHhcCCCceEEEE
Confidence 36678899997 56799999999999997 57776642 12444555566655543455554
Q ss_pred eccc
Q 001301 195 TTEL 198 (1104)
Q Consensus 195 ~~~l 198 (1104)
..++
T Consensus 89 ~~Dl 92 (279)
T 1xg5_A 89 RCDL 92 (279)
T ss_dssp ECCT
T ss_pred EecC
Confidence 4444
No 331
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=85.08 E-value=1.4 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~------~V~~~~r 45 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA------RVIIADL 45 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899998 69999999999999997 7888863
No 332
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=85.06 E-value=2.4 Score=46.76 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=60.7
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeec
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTT 196 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~ 196 (1104)
+.+|||.|+ |++|..+++.|+..|. +++++|...-. .....+.+.+. .+. +..+..
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~ 62 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNS-------------------KREAIARIEKITGKT--PAFHET 62 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSS-------------------CTHHHHHHHHHHSCC--CEEECC
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcc-------------------hHHHHHHHHhhcCCC--ceEEEe
Confidence 468999985 7799999999999996 57776643211 01112233332 222 334444
Q ss_pred ccch-----hhhc--CCceEEEecC-----------------CHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 197 ELTK-----EKLS--DFQAVVFTDI-----------------SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 197 ~l~~-----e~l~--~~dvVV~~~~-----------------~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
++.+ +.++ +.|+||.+.. +......+-+.|++.+. ..||..++.+.+|
T Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~SS~~~~g 134 (341)
T 3enk_A 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAV-KRIVFSSSATVYG 134 (341)
T ss_dssp CTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEEEGGGBC
T ss_pred ecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEecceEec
Confidence 4432 2344 6788886542 11223355667888772 2688777766654
No 333
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=85.03 E-value=2.5 Score=46.71 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=49.2
Q ss_pred eEEEEc-CChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHH---hCCCcEEEEee
Q 001301 121 NILISG-MQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE---LNNAVAISALT 195 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~e---LNp~V~V~~~~ 195 (1104)
||+|+| +|.+|..++..|+..|. ..+.|+|.. .+ ..|++..+..|.. +...+++..
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~----~~-------------~~~~~~~~~dl~~~~~~~~~~~v~~-- 62 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP----DK-------------EDDTVGQAADTNHGIAYDSNTRVRQ-- 62 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG----GG-------------HHHHHHHHHHHHHHHTTTCCCEEEE--
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCC----CC-------------hhhHHHHHHHHHHHHhhCCCcEEEe--
Confidence 799999 99999999999998885 458888850 00 1123322233333 355667765
Q ss_pred cccchhhhcCCceEEEecC
Q 001301 196 TELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 196 ~~l~~e~l~~~dvVV~~~~ 214 (1104)
. +.+.+++.|+||.+..
T Consensus 63 ~--~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 63 G--GYEDTAGSDVVVITAG 79 (303)
T ss_dssp C--CGGGGTTCSEEEECCC
T ss_pred C--CHHHhCCCCEEEEcCC
Confidence 2 2556889999998764
No 334
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=84.99 E-value=0.89 Score=51.56 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=50.7
Q ss_pred hcCcEEEEcCCcchHHHHHHHHh-cccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 515 EEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
...+|+|||+|+.|..+++.|.. .++ .+++++|.+ ..|++.+++.+.. .+.+.+
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~-----~~V~V~~r~-------------------~~~a~~la~~~~~-~~g~~~ 182 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGI-----EEIVAYDTD-------------------PLATAKLIANLKE-YSGLTI 182 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCC-----CEEEEECSS-------------------HHHHHHHHHHHTT-CTTCEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCC-----cEEEEEcCC-------------------HHHHHHHHHHHHh-ccCceE
Confidence 46789999999999999998864 466 788888632 2355556655543 134444
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccCC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
..+. +. .+...+.|+||.|+-+
T Consensus 183 ~~~~-----~~-----~eav~~aDiVi~aTps 204 (350)
T 1x7d_A 183 RRAS-----SV-----AEAVKGVDIITTVTAD 204 (350)
T ss_dssp EECS-----SH-----HHHHTTCSEEEECCCC
T ss_pred EEeC-----CH-----HHHHhcCCEEEEeccC
Confidence 3331 11 2446789999999864
No 335
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=84.98 E-value=1.7 Score=48.42 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+..||.|||+|.+|..++..|+..|.. ..|.++|-|
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~----~ei~L~Di~ 40 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIV----DELVIIDLD 40 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSC----SEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeCC
Confidence 4557999999999999999999988863 579999854
No 336
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=84.97 E-value=1.5 Score=46.79 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.0
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+|.|||+|.+|+.+++.|+..|+. +...++++|.+
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~--~~~~v~~~~~~ 40 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANII--KKENLFYYGPS 40 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSS--CGGGEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCC--CCCeEEEEeCC
Confidence 35899999999999999999999830 00278888754
No 337
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=84.96 E-value=0.59 Score=50.57 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~------~V~~~~r 59 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGA------IVGLHGT 59 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 357788999998 68999999999999997 7888764
No 338
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=84.94 E-value=1.4 Score=46.68 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=50.6
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcce-EEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEeee
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKL-TITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 596 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i-~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~~ 596 (1104)
||.|||+|.+|..++++|...|+ .+ .+.|.+. ...+ .+
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~------~lv~v~d~~~----~~~~-------------------------------~~ 40 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGF------EIAAILDVRG----EHEK-------------------------------MV 40 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC------EEEEEECSSC----CCTT-------------------------------EE
T ss_pred EEEEECCCHHHHHHHHHHhcCCC------EEEEEEecCc----chhh-------------------------------hc
Confidence 79999999999999999998777 54 6777552 1110 11
Q ss_pred cccCCccccccchhhhh-ccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001301 597 QIRANPETENVFNDTFW-ENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 645 (1104)
Q Consensus 597 ~~~v~~~~~~~~~~~f~-~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 645 (1104)
. +. .+++ .+.|+|+.|+-+.....++ ..|.+.+++++.
T Consensus 41 ----~-~~-----~~l~~~~~DvVv~~~~~~~~~~~~-~~~l~~G~~vv~ 79 (236)
T 2dc1_A 41 ----R-GI-----DEFLQREMDVAVEAASQQAVKDYA-EKILKAGIDLIV 79 (236)
T ss_dssp ----S-SH-----HHHTTSCCSEEEECSCHHHHHHHH-HHHHHTTCEEEE
T ss_pred ----C-CH-----HHHhcCCCCEEEECCCHHHHHHHH-HHHHHCCCcEEE
Confidence 0 11 1233 5789999999776555444 456666777664
No 339
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=84.92 E-value=0.87 Score=48.94 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHhcCcEEEEc-CCcchHHHHHHHHhccc
Q 001301 511 QKKLEEAKVFVVG-SGALGCEFLKNLALMGV 540 (1104)
Q Consensus 511 q~kL~~~~VlvvG-~GgiG~evlknLa~~Gv 540 (1104)
+..+.+++|+|.| .||||.++++.|+..|.
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~ 51 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAADGF 51 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 4457788899998 68999999999999998
No 340
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=84.89 E-value=0.95 Score=50.33 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=49.3
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+....+|.|||+|..|..++++|... |+.+++++|.+ ..|++.+++.+ .. .+...
T Consensus 132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~-------------------~~~~~~l~~~~---~~--~~~~~ 187 (312)
T 2i99_A 132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT-------------------KENAEKFADTV---QG--EVRVC 187 (312)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS-------------------HHHHHHHHHHS---SS--CCEEC
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHh---hC--CeEEe
Confidence 34567899999999999999999988 98899998752 12444433332 11 12221
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
. . .++.+.+.|+|+.|..
T Consensus 188 ~-~-~~e~v~~aDiVi~atp 205 (312)
T 2i99_A 188 S-S-VQEAVAGADVIITVTL 205 (312)
T ss_dssp S-S-HHHHHTTCSEEEECCC
T ss_pred C-C-HHHHHhcCCEEEEEeC
Confidence 1 1 2356778999998874
No 341
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=84.89 E-value=0.98 Score=48.90 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~r 60 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGA------MVIGTAT 60 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46777888887 68999999999999997 7888764
No 342
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=84.87 E-value=2.4 Score=46.14 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=48.5
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
.+|.|||+ |.+|..+++.|...|. +++++|.+. .+++. +.+.. +.+ ..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~-------------------~~~~~----~~~~g--~~~----~~- 60 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAP-------------------EGRDR----LQGMG--IPL----TD- 60 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSH-------------------HHHHH----HHHTT--CCC----CC-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCH-------------------HHHHH----HHhcC--CCc----CC-
Confidence 48999999 9999999999999996 788877421 12222 22221 221 11
Q ss_pred chhhhcCCceEEEecCCHhHhhhHHHH
Q 001301 199 TKEKLSDFQAVVFTDISLEKAVEFDDY 225 (1104)
Q Consensus 199 ~~e~l~~~dvVV~~~~~~~~~~~ln~~ 225 (1104)
..+.+.++|+||.|..+......+.++
T Consensus 61 ~~~~~~~aDvVi~av~~~~~~~v~~~l 87 (286)
T 3c24_A 61 GDGWIDEADVVVLALPDNIIEKVAEDI 87 (286)
T ss_dssp SSGGGGTCSEEEECSCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCCchHHHHHHHHH
Confidence 234677899999998654433333333
No 343
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=84.80 E-value=1.5 Score=45.93 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=27.1
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.++++|.| .||||.++++.|+..|. +++++|.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~------~V~~~~r 34 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY------ALALGAR 34 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 45788888 68999999999999998 6888764
No 344
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=84.79 E-value=2.1 Score=50.61 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=29.2
Q ss_pred HHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 114 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 114 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
...|.+++|.|||+|..|..+|.+|+..|. .|+++|.
T Consensus 10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r 46 (480)
T 2zyd_A 10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNR 46 (480)
T ss_dssp -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeC
Confidence 456888999999999999999999999997 5778764
No 345
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Probab=84.78 E-value=1.8 Score=46.96 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=27.3
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+|||.|+ |.+|.++++.|+..|...+++++..
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~ 33 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 5899997 7799999999999996678887753
No 346
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=84.76 E-value=0.93 Score=50.61 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+.+++|+|.| .|.||+.+++.|+..|. +++++|.+
T Consensus 5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~ 42 (357)
T 1rkx_A 5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA------TVKGYSLT 42 (357)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred hhhCCCEEEEECCCchHHHHHHHHHHhCCC------eEEEEeCC
Confidence 457788999999 69999999999999986 78888753
No 347
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=84.73 E-value=5 Score=43.29 Aligned_cols=80 Identities=18% Similarity=0.106 Sum_probs=49.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCc-eEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 198 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l 198 (1104)
.+|.|||+|.+|..+++.|...|.. +|+++|.+. .+++. +.+..-... .. .++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~----~~~~g~~~~--~~-~~~ 55 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISK----AVDLGIIDE--GT-TSI 55 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHH----HHHTTSCSE--EE-SCG
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHH----HHHCCCccc--cc-CCH
Confidence 4799999999999999999999963 688877531 12221 222221101 11 112
Q ss_pred chhhhc-CCceEEEecCCHhHhhhHHHHH
Q 001301 199 TKEKLS-DFQAVVFTDISLEKAVEFDDYC 226 (1104)
Q Consensus 199 ~~e~l~-~~dvVV~~~~~~~~~~~ln~~c 226 (1104)
++.+. +.|+||+|..+......+.++.
T Consensus 56 -~~~~~~~aDvVilavp~~~~~~v~~~l~ 83 (281)
T 2g5c_A 56 -AKVEDFSPDFVMLSSPVRTFREIAKKLS 83 (281)
T ss_dssp -GGGGGTCCSEEEECSCHHHHHHHHHHHH
T ss_pred -HHHhcCCCCEEEEcCCHHHHHHHHHHHH
Confidence 24677 8999999986555444444443
No 348
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=84.73 E-value=1.2 Score=48.23 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=31.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r~ 44 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGA------RVVLADLP 44 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEECT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 46778899998 68999999999999997 78888754
No 349
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=84.72 E-value=0.92 Score=49.72 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~------~V~~~~~ 81 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA------DVAINYL 81 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46788999998 68999999999999998 7888764
No 350
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=84.68 E-value=1 Score=50.72 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=27.7
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
++|+|.| .|.||..+++.|+..|. -+++.+|.+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~-----~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD-----HHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-----CEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEECCC
Confidence 4799999 69999999999999986 477777754
No 351
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=84.56 E-value=2.7 Score=45.23 Aligned_cols=36 Identities=33% Similarity=0.315 Sum_probs=27.9
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+-..++|||.|. |.+|+++++.|...| .+|++++..
T Consensus 9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 45 (292)
T 1vl0_A 9 HHHHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ 45 (292)
T ss_dssp ---CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT
T ss_pred ccccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc
Confidence 455678999986 669999999999999 478888764
No 352
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=84.53 E-value=1.1 Score=48.41 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
|.+++++|.| .||||.++++.|+..|. +++++|
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~------~V~~~~ 62 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA------AVALTY 62 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 6778899998 68999999999999998 777775
No 353
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=84.53 E-value=0.56 Score=53.03 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=30.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+.||+|||+|..|+.+|-.|++.|+ +++|+|.+
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~------~v~v~Er~ 33 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGI------KVTIYERN 33 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC------EEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC------CEEEEecC
Confidence 4699999999999999999999999 89999864
No 354
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=84.52 E-value=1 Score=49.26 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=31.1
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~------~V~~~~r~ 80 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA------NIAIAYLD 80 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 57788999998 68999999999999998 78888743
No 355
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=84.50 E-value=1.1 Score=49.40 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=27.9
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++|+|.| .|+||..+++.|+..|. +++++|.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G~------~V~~~~r 37 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHGY------DVVIADN 37 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTTC------EEEEECC
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCCC------cEEEEec
Confidence 46899998 69999999999999997 7888764
No 356
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}
Probab=84.45 E-value=1.1 Score=51.51 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred cCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCC-----
Q 001301 516 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP----- 589 (1104)
Q Consensus 516 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np----- 589 (1104)
.++|+|.|+ |+||+++++.|+..|. ++++++.+.- .......+.+.+....+
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~~g~------~V~~~~R~~~----------------~~~~~~~l~~~l~~~~~~~~~~ 126 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQGYSH------RIYCFIRADN----------------EEIAWYKLMTNLNDYFSEETVE 126 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTTTEE------EEEEEEECSS----------------HHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHcCCC------EEEEEECCCC----------------hHHHHHHHHHHHHHhccccccc
Confidence 348999995 9999999999988776 7777652210 00111222233332221
Q ss_pred --CcEEeeecccCCccccccchhhhhccCCEEEEccC--------------CHHHHHHHhhcccccccceEecccCCccc
Q 001301 590 --HLNTEALQIRANPETENVFNDTFWENLNVVVNALD--------------NVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 590 --~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD--------------n~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
.-+++.+...+.+.. . +. .+.++|+||+|.- |+..-..+-+.|....+.+|..++.+. |
T Consensus 127 ~~~~~v~~v~~Dl~d~~-~-l~--~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G 201 (427)
T 4f6c_A 127 MMLSNIEVIVGDFECMD-D-VV--LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-G 201 (427)
T ss_dssp HHHTTEEEEEECC---C-C-CC--CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-G
T ss_pred cccCceEEEeCCCCCcc-c-CC--CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-C
Confidence 124556666665421 1 21 4678999998864 223334555666665566776666555 5
Q ss_pred c
Q 001301 654 N 654 (1104)
Q Consensus 654 ~ 654 (1104)
.
T Consensus 202 ~ 202 (427)
T 4f6c_A 202 T 202 (427)
T ss_dssp S
T ss_pred C
Confidence 4
No 357
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=84.44 E-value=2.7 Score=46.24 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.8
Q ss_pred hcCeEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCC
Q 001301 118 FASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEG 152 (1104)
Q Consensus 118 ~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d 152 (1104)
.+.+|||.|+ |++|..+++.|+..|- -+++++|..
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~ 38 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL 38 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3457999995 7899999999999984 378887753
No 358
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=84.42 E-value=1.2 Score=50.37 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.3
Q ss_pred cCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.++|+|.|+ |.||+.+++.|+..|. +++++|.+
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~ 62 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH------YVIASDWK 62 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC------eEEEEECC
Confidence 368999996 9999999999999986 78888754
No 359
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=84.39 E-value=2.5 Score=47.13 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=49.9
Q ss_pred eEEEEc-CChhhHHHHHHHHHh-C-CceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 121 NILISG-MQGLGAEIAKNLILA-G-VKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 121 ~VlIiG-~gglGseiaKnLvla-G-Vg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
+|.|+| +|.+|..++..|... + +..|.|+|.+. |++..+-.|+.....++|..+...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~~ 61 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSGE 61 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECSS
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecCC
Confidence 799999 899999999999876 4 46899998632 111223345544444566654321
Q ss_pred cchhhhcCCceEEEecC
Q 001301 198 LTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 198 l~~e~l~~~dvVV~~~~ 214 (1104)
-+.+-+++.|+||.+..
T Consensus 62 ~~~~~~~~aDivii~ag 78 (312)
T 3hhp_A 62 DATPALEGADVVLISAG 78 (312)
T ss_dssp CCHHHHTTCSEEEECCS
T ss_pred CcHHHhCCCCEEEEeCC
Confidence 23456889999998864
No 360
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=84.36 E-value=1 Score=49.90 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=29.6
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
...+|.|||+|.+|..+|++|+..|. .++++|.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~ 41 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRS 41 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34689999999999999999999997 68888753
No 361
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=84.29 E-value=1.2 Score=48.09 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=29.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~------~V~~~~r 63 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS------KLVLWDI 63 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEEc
Confidence 5678999998 78999999999999997 7888874
No 362
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=84.27 E-value=1.7 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.7
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcc
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMG 539 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~G 539 (1104)
++|+|.| .|+||..+++.|+..|
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g 25 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN 25 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS
T ss_pred CEEEEECCCchHHHHHHHHHHhCC
Confidence 4799999 5999999999998776
No 363
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=84.24 E-value=0.97 Score=49.44 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred hcCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 515 EEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 515 ~~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
++++|+|.|+ |.||..+++.|+..|. +++++|.+.-. +.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r~~~~-------------------------------~~--- 40 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNW------HAVGCGFRRAR-------------------------------PK--- 40 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTC------EEEEEC-----------------------------------------
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCC------eEEEEccCCCC-------------------------------CC---
Q ss_pred eeecccCCccccccchhhhhcc--CCEEEEccC-----------------CHHHHHHHhhcccccccceEecccCCccc
Q 001301 594 EALQIRANPETENVFNDTFWEN--LNVVVNALD-----------------NVNARLYIDQRCLYFQKPLLESGTLGAKC 653 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~--~DvVi~alD-----------------n~~aR~~i~~~c~~~~~pli~~g~~G~~G 653 (1104)
.+...+.+...- ...+++ +|+||++.. |+.+-..+-+.|...+..+|..++.+..|
T Consensus 41 -~~~~Dl~d~~~~---~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~ 115 (315)
T 2ydy_A 41 -FEQVNLLDSNAV---HHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFD 115 (315)
T ss_dssp ------------C---HHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSC
T ss_pred -eEEecCCCHHHH---HHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcC
No 364
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=84.23 E-value=1.4 Score=48.99 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+|+|+|+|++|+.+|..|..+|. .++++|.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 589999999999999999999995 88888764
No 365
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=84.10 E-value=0.63 Score=49.75 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=30.5
Q ss_pred HHHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 511 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 511 q~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
...+..++|.|||+|.+|..++++|+..|. ++++.|.+
T Consensus 14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~------~V~~~~r~ 51 (245)
T 3dtt_A 14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH------EVTIGTRD 51 (245)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred ccccCCCeEEEECCCHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 457889999999999999999999999997 78888754
No 366
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=84.09 E-value=1.4 Score=48.00 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.1
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+|.+++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~------~V~~~~r 50 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGS------NVVIASR 50 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 46778999998 78999999999999997 7888764
No 367
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=84.07 E-value=1.1 Score=49.40 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=27.9
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+++|+|.| .|+||..+++.|+..|-+ -+++++|..
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~----~~V~~~~r~ 38 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPD----WEVINIDKL 38 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTT----CEEEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCC----CEEEEEecC
Confidence 356899999 599999999999999730 277777643
No 368
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=84.05 E-value=2.7 Score=45.16 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=56.2
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|||.|+ |.+|..+++.|...|. +|+.++... .|+.. .+.+.+.+++..+++-|+.-.....
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--------------~D~~d--~~~~~~~~~~~~~d~vi~~a~~~~~ 69 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDKKL--------------LDITN--ISQVQQVVQEIRPHIIIHCAAYTKV 69 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTE-EEEEECTTT--------------SCTTC--HHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEecccc--------------cCCCC--HHHHHHHHHhcCCCEEEECCcccCh
Confidence 7999995 7799999999999995 788887622 23322 2333444444433332222110000
Q ss_pred hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 200 KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 200 ~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
.......+-. -..+......+-+.|++.+ +.||..++.+.+|
T Consensus 70 ~~~~~~~~~~--~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~vy~ 111 (287)
T 3sc6_A 70 DQAEKERDLA--YVINAIGARNVAVASQLVG--AKLVYISTDYVFQ 111 (287)
T ss_dssp HHHTTCHHHH--HHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSC
T ss_pred HHHhcCHHHH--HHHHHHHHHHHHHHHHHcC--CeEEEEchhhhcC
Confidence 0000000000 0001222356778899998 7899888876664
No 369
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=84.03 E-value=1.6 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999995 688888654
No 370
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=84.03 E-value=1.8 Score=46.92 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 54 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL------RVFVCAR 54 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677899998 78999999999999997 7888864
No 371
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=84.03 E-value=1.5 Score=48.66 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+..++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~------~V~~~~r~ 54 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGD------KVVGIDNF 54 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEECC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCC------EEEEEECC
Confidence 45567999998 69999999999999986 78888754
No 372
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=83.99 E-value=1.7 Score=45.77 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=28.2
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+++++|+|.| .|+||.++++.|+..|. +++++|
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~------~V~~~~ 36 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA------NIVLNG 36 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEE
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 4567899998 78999999999999997 777774
No 373
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=83.99 E-value=0.95 Score=48.41 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=50.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|.+++++|.| .||||.++++.|+..|. +++++|.+. .+.+.+++.+....+ +
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~ 55 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGA------TVYITGRHL-------------------DTLRVVAQEAQSLGG--Q 55 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC------EEEEEESCH-------------------HHHHHHHHHHHHHSS--E
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHHcCC--c
Confidence 5567788887 78999999999999997 788876431 233344455554443 5
Q ss_pred EeeecccCCcccc--ccchh---hhhccCCEEEEcc
Q 001301 593 TEALQIRANPETE--NVFND---TFWENLNVVVNAL 623 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~~---~f~~~~DvVi~al 623 (1104)
+..+..++.+... ..++. ..+...|++|++.
T Consensus 56 ~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 56 CVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91 (260)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred eEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 5566666654221 11211 1144567777664
No 374
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=83.98 E-value=1 Score=49.11 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=30.3
Q ss_pred HhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
|.+++++|||.|+ +|..+++.|...|. .+++++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA------tVtv~~ 181 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY------TVSVCH 181 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC------EEEEEC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC------eEEEEe
Confidence 8899999999997 79999999999997 788885
No 375
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=83.98 E-value=3.6 Score=43.44 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.3
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+|.|||+|.+|..++++|...|+.-+.++|.+
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~ 33 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR 33 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence 79999999999999999998888655788875
No 376
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=83.97 E-value=2.7 Score=46.92 Aligned_cols=73 Identities=15% Similarity=0.028 Sum_probs=53.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 118 FASNILISGMQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
...+|+|||+|+.|...++.|... ++.+++++|.+ ..|++..++.+.... +.+. . .
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~-~ 180 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-V-Q 180 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-E-C
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-E-C
Confidence 467899999999999999999874 78999998752 347777777776532 3343 2 2
Q ss_pred ccchhhhcCCceEEEecCC
Q 001301 197 ELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~ 215 (1104)
++ ++.+ ++|+|+.|+.+
T Consensus 181 ~~-~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 181 PA-EEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CH-HHHT-SSSEEEECCCC
T ss_pred CH-HHHh-CCCEEEEeeCC
Confidence 22 3456 89999999864
No 377
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=83.96 E-value=1.2 Score=49.25 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.6
Q ss_pred HhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++|+|||.|. +|..+++.|...|. .+++++
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA------tVtv~h 196 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA------TVTTCH 196 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC------EEEEEC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCC------eEEEEE
Confidence 6788999999996 79999999999987 789886
No 378
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=83.91 E-value=1 Score=49.44 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.|.+++|+|.| .||||.++++.|+..|. +++++|.+
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~------~V~~~~r~ 74 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGA------NVAVAARS 74 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 35678888888 68999999999999998 88888744
No 379
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=83.89 E-value=2.6 Score=45.96 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=22.5
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEE
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTL 148 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itL 148 (1104)
++|||.|+ |++|..+++.|...| ..+.+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~ 30 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVI 30 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEE
Confidence 37999996 779999999999999 44444
No 380
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=83.89 E-value=1.3 Score=49.57 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=52.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhc-ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
+++++|+|.| .|+||+++++.|+.. |. .+++++|.+. .|...+++.+. .-
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-----~~V~~~~r~~-------------------~~~~~~~~~~~----~~ 70 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-----KKIIVYSRDE-------------------LKQSEMAMEFN----DP 70 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCC-----SEEEEEESCH-------------------HHHHHHHHHHC----CT
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCC-----CEEEEEECCh-------------------hhHHHHHHHhc----CC
Confidence 4568999999 699999999999999 87 6888886432 12222333222 12
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccC
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
.++.+...+.+.. .+ ...++++|+||.+..
T Consensus 71 ~v~~~~~Dl~d~~-~l--~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 71 RMRFFIGDVRDLE-RL--NYALEGVDICIHAAA 100 (344)
T ss_dssp TEEEEECCTTCHH-HH--HHHTTTCSEEEECCC
T ss_pred CEEEEECCCCCHH-HH--HHHHhcCCEEEECCC
Confidence 4556666665422 11 245678999998763
No 381
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=83.88 E-value=3 Score=44.57 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=25.6
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEe
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHD 150 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD 150 (1104)
+|.|||+|.+|..++++|+..|. .++++|
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~ 30 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL 30 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence 69999999999999999999997 566654
No 382
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=83.88 E-value=2.1 Score=47.99 Aligned_cols=34 Identities=32% Similarity=0.616 Sum_probs=29.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..||.|||+|.+|..++-.|+..|.. ..|+++|-
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~----~el~L~Di 42 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIA----QEIGIVDI 42 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC----SEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCC----CEEEEEeC
Confidence 36899999999999999999988863 57999984
No 383
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=83.88 E-value=1.8 Score=46.29 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~------~V~~~~r 48 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGA------KVVIADI 48 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcC
Confidence 5678899998 68999999999999997 7888764
No 384
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=83.86 E-value=3.1 Score=45.99 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=27.9
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
.+...+|||.| .|++|..+++.|+..|. +|+++|..
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~ 54 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF 54 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence 34457899998 57799999999999994 78887764
No 385
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=83.85 E-value=3.5 Score=44.13 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=42.2
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.|.+++|+|.| .||+|.++++.|+..|. ++.++|.+ ..+.+.+.+.+.+..+..++..+
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 69 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT 69 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhcCCceEEEE
Confidence 36678899997 56799999999999997 57776642 12445555666666544455444
Q ss_pred eccc
Q 001301 195 TTEL 198 (1104)
Q Consensus 195 ~~~l 198 (1104)
..++
T Consensus 70 ~~D~ 73 (267)
T 1iy8_A 70 VADV 73 (267)
T ss_dssp ECCT
T ss_pred EccC
Confidence 4433
No 386
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=83.84 E-value=1.6 Score=46.90 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred cCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 119 ASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 119 ~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.++|+|.| .|++|.++++.|+..|. ++.+.|.+.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~ 37 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSP 37 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCC
Confidence 46799998 57799999999999995 677877643
No 387
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=83.81 E-value=2.8 Score=46.46 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|||+|.+|..++..|+..|. ..++++|-|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~-----~~v~L~Di~ 35 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKEL-----GDIVLLDIV 35 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----SEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEeCC
Confidence 589999999999999999999996 359999854
No 388
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=83.80 E-value=2.2 Score=45.57 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=39.5
Q ss_pred HHHhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCC
Q 001301 114 MRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN 187 (1104)
Q Consensus 114 q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp 187 (1104)
|..|.+++|+|.|+ ||+|.++|+.|+..|.. |.++|.+ ..+.+.+.+.+.+..+
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~ 78 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARD-------------------VEKLRAVEREIVAAGG 78 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHhCC
Confidence 44577889999985 78999999999999984 7777642 2355566666666554
No 389
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=83.75 E-value=0.71 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..||+|||+|++|+.++..|++.|. .++++|.+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~------~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGE------DVHFLLRR 34 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSC------CEEEECST
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC------eEEEEEcC
Confidence 3689999999999999999999986 78888754
No 390
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=83.71 E-value=2.8 Score=46.71 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.6
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|+|+|.+|+.++..|+..|+. ..|+++|-+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~----~el~l~D~~ 34 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVA----KEVVMVDIK 34 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCS----SEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeCc
Confidence 4799999999999999999999973 589999843
No 391
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=83.70 E-value=2.1 Score=47.75 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=31.3
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+..||.|||+|.+|+.++..|+..|+ +.++++|.+
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~-----~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKEL-----ADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-----CEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEecc
Confidence 35689999999999999999999988 799999854
No 392
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=83.67 E-value=0.51 Score=53.97 Aligned_cols=37 Identities=41% Similarity=0.549 Sum_probs=34.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|...||+|+|+|..|..+++.|..+|+ ++|+++|.+
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~-----~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGV-----KNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEECC
Confidence 5778899999999999999999999999 899999965
No 393
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=83.60 E-value=1 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=29.9
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
..+|.|||+|.+|..+|++|+..|. .++++|.+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 4689999999999999999999996 688888644
No 394
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=83.57 E-value=1.1 Score=48.75 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~------~V~~~~r 61 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGC------HVLCADI 61 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57788899998 78999999999999997 7888874
No 395
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=83.56 E-value=1.8 Score=48.19 Aligned_cols=73 Identities=27% Similarity=0.233 Sum_probs=49.1
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhC---CCcEE
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN---PHLNT 593 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~n---p~~~i 593 (1104)
.||.|||+|.+|..++-.|+..|.. ++|+++|-| ..|++..+..+.... ..+++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~----~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v 57 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVA----REVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWV 57 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC----SEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEE
Confidence 4899999999999999999998863 689999843 233443344444332 34455
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD 624 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 624 (1104)
++ ++ .+-+++.|+||.+..
T Consensus 58 ~~-----~~-------~~a~~~aD~Vii~ag 76 (310)
T 2xxj_A 58 WA-----GS-------YGDLEGARAVVLAAG 76 (310)
T ss_dssp EE-----CC-------GGGGTTEEEEEECCC
T ss_pred EE-----CC-------HHHhCCCCEEEECCC
Confidence 53 11 122678999998864
No 396
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=83.55 E-value=1 Score=47.90 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=27.9
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHh-cccccCCCcceEEecCC
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLAL-MGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~-~Gv~~~~~g~i~iiD~D 554 (1104)
++++|+|.| .|+||.++++.|+. .|. ++++++.+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~------~V~~~~r~ 38 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG------DVVLTARD 38 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS------EEEEEESS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 356788887 79999999999999 887 78887643
No 397
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=83.55 E-value=1.7 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcCC---cchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSG---ALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~G---giG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|+++.++|-|++ |||-++++.|+..|. +++++|.
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga------~Vvi~~r 40 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA------KLVFTYR 40 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCC------EEEEEEC
Confidence 3678899999974 899999999999998 8888874
No 398
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=83.54 E-value=3.6 Score=43.47 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
++.+++|+|.|+ ||+|.++|+.|+..|.. +.++|.+ ..+.+.+.+.+.+..+ ++..+
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~ 63 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADIN-------------------AEAAEAVAKQIVADGG--TAISV 63 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence 467889999985 67999999999999984 7777642 2355556666666554 34444
Q ss_pred eccc
Q 001301 195 TTEL 198 (1104)
Q Consensus 195 ~~~l 198 (1104)
..++
T Consensus 64 ~~D~ 67 (253)
T 3qiv_A 64 AVDV 67 (253)
T ss_dssp ECCT
T ss_pred EccC
Confidence 4444
No 399
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=83.54 E-value=1.1 Score=48.02 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+|++++++|.| .||||.++++.|+..|. ++++++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~------~V~~~~ 39 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGA------NVVLTY 39 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 46788999998 68999999999999998 777763
No 400
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=83.46 E-value=1.2 Score=49.26 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++++|||.|+ +|..++..|...|. .+++++.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA------tVtv~~~ 197 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENA------TVTIVHS 197 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC------EEEEECT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeC
Confidence 47889999999998 79999999999998 7888864
No 401
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=83.42 E-value=1 Score=48.13 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.9
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r 38 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA------RVVITGR 38 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 36678899998 68999999999999997 7888874
No 402
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=83.41 E-value=1.4 Score=47.92 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~------~V~~~~r 65 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGY------SVVITGR 65 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 457888999998 68999999999999997 7888874
No 403
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=83.35 E-value=1.7 Score=46.31 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.4
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+++++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~------~V~~~~r~ 42 (261)
T 3n74_A 6 SLEGKVALITGAGSGFGEGMAKRFAKGGA------KVVIVDRD 42 (261)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcCC
Confidence 35678899998 57899999999999997 78888743
No 404
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=83.34 E-value=1.4 Score=47.64 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+.+++++|.| .||||.++++.|+..|. +++++|.+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~------~V~~~~r~ 61 (272)
T 4dyv_A 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGY------GVALAGRR 61 (272)
T ss_dssp ----CCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEESC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 356777888888 68999999999999998 78888743
No 405
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=83.33 E-value=1.3 Score=46.88 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=41.1
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
.+++++|.| .||||.++++.|+..|. +++++|.+. ..+.+.+++.+....+ ++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~------~V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~ 56 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY------NVAVNYAGS------------------KEKAEAVVEEIKAKGV--DS 56 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEESSC------------------HHHHHHHHHHHHHTTS--CE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCCC------------------HHHHHHHHHHHHhcCC--cE
Confidence 456788887 68999999999999997 777766321 1244455556655443 44
Q ss_pred eeecccCCc
Q 001301 594 EALQIRANP 602 (1104)
Q Consensus 594 ~~~~~~v~~ 602 (1104)
..+..++.+
T Consensus 57 ~~~~~Dv~d 65 (246)
T 3osu_A 57 FAIQANVAD 65 (246)
T ss_dssp EEEECCTTC
T ss_pred EEEEccCCC
Confidence 455555553
No 406
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=83.21 E-value=1 Score=50.11 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=30.8
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
+....+|.|||+|.+|..+|++|+..|. .++++|.+
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~ 63 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT 63 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence 4456699999999999999999999997 68888864
No 407
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=83.18 E-value=1.6 Score=48.13 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=26.8
Q ss_pred CcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 517 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
++|+|.| .|+||+.+++.|+..|. +++++|.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~------~V~~~~r 33 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGI------DLIVFDN 33 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC------EEEEEEC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCC------EEEEEeC
Confidence 4799999 69999999999999886 7888763
No 408
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=83.14 E-value=3.1 Score=46.17 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=48.7
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCC-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhC----CCcEEEEe
Q 001301 121 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISAL 194 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLN----p~V~V~~~ 194 (1104)
||+|+|+ |.+|+.++..|+..|. ..+.|+|.. . ...|++..+..|.... ..+++...
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~----~-------------~~~~~~~~~~dl~~~~~~~~~~~~i~~~ 64 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE----H-------------SINKLEGLREDIYDALAGTRSDANIYVE 64 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG----G-------------GHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCC----C-------------chhhhHHHHHHHHHhHHhcCCCeEEEeC
Confidence 7999999 9999999999998886 458888840 0 0123443333344333 34455542
Q ss_pred ecccchhhhcCCceEEEecC
Q 001301 195 TTELTKEKLSDFQAVVFTDI 214 (1104)
Q Consensus 195 ~~~l~~e~l~~~dvVV~~~~ 214 (1104)
++.+ .+.+++.|+||.+..
T Consensus 65 ~d~l-~~al~gaD~Vi~~Ag 83 (313)
T 1hye_A 65 SDEN-LRIIDESDVVIITSG 83 (313)
T ss_dssp ETTC-GGGGTTCSEEEECCS
T ss_pred Ccch-HHHhCCCCEEEECCC
Confidence 2112 345789999998754
No 409
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=83.12 E-value=3.3 Score=45.58 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=26.0
Q ss_pred CeEEEEc-CChhhHHHHHHHHHhCCceEEEEeC
Q 001301 120 SNILISG-MQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 120 s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.+|||.| .|++|..+++.|+..|. +|+++|.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r 33 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN 33 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeC
Confidence 3799999 57799999999999995 6777764
No 410
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=83.11 E-value=1.8 Score=48.21 Aligned_cols=89 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
+.+++|+|.| .||||.++++.|+..|. ++++++.+... ....+.+.+++.+....+ +
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~------~V~~~~r~~~~--------------r~~~~~~~l~~~~~~~~~--~ 60 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGH------RVYASMRDIVG--------------RNASNVEAIAGFARDNDV--D 60 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC------EEEEEESCTTT--------------TTHHHHHHHHHHHHHHTC--C
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEecCcccc--------------cCHHHHHHHHHHHHhcCC--c
Confidence 4567888888 69999999999999997 77777644321 123345555666655544 4
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEccC
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNALD 624 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~alD 624 (1104)
+..+..++.+... ..+. .+-+...|+||++..
T Consensus 61 ~~~~~~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG 96 (324)
T 3u9l_A 61 LRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG 96 (324)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred EEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5555556654221 1111 011347888887753
No 411
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=83.09 E-value=1.1 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+.+++|+|||.|. +|..+++.|...|. .+++++
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gA------tVtv~h 190 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGC------TTTVTH 190 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTC------EEEEEC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCC------eEEEEe
Confidence 36678999999997 69999999999986 888886
No 412
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=83.06 E-value=0.8 Score=53.41 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=33.0
Q ss_pred HhhcCeEEEEcCChhhHHHHHHHHHhCC--ceEEEEe
Q 001301 116 RLFASNILISGMQGLGAEIAKNLILAGV--KSVTLHD 150 (1104)
Q Consensus 116 kL~~s~VlIiG~gglGseiaKnLvlaGV--g~itLvD 150 (1104)
.+++.+|+|+|+||.|..+++.|+..|+ ++|+++|
T Consensus 183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd 219 (439)
T 2dvm_A 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE 219 (439)
T ss_dssp CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence 4677899999999999999999999999 9999999
No 413
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=83.04 E-value=0.89 Score=46.60 Aligned_cols=32 Identities=34% Similarity=0.350 Sum_probs=29.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 152 (1104)
..|+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence 569999999999999999999999 69999853
No 414
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=83.03 E-value=2.1 Score=47.89 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=39.1
Q ss_pred Hhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 102 HSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 102 Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
|+|+++- |.......|.+++|.|||+|.+|..+|+.|...|. +|..+|...
T Consensus 121 ~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 173 (324)
T 3hg7_A 121 YREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG 173 (324)
T ss_dssp HHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred HHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence 4444432 54333356889999999999999999999999998 688888654
No 415
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=83.02 E-value=0.72 Score=51.31 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.4
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
..+|+|||+|++|+.++..|++.|. .++++|.+.
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~------~V~~~~r~~ 35 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGH------CVSVVSRSD 35 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTC------EEEEECSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCh
Confidence 3689999999999999999999986 888887543
No 416
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=83.00 E-value=0.93 Score=49.08 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=52.3
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcE
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 592 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~ 592 (1104)
|+++.++|-| ++|||-++++.|+..|. ++.++|.+ ..+.+.+++.+.+... +
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga------~Vvi~~~~-------------------~~~~~~~~~~l~~~g~--~ 59 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA------RVILNDIR-------------------ATLLAESVDTLTRKGY--D 59 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEECCSC-------------------HHHHHHHHHHHHHTTC--C
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEECC-------------------HHHHHHHHHHHHhcCC--c
Confidence 6777788877 88999999999999998 88888632 2244445566666543 4
Q ss_pred EeeecccCCcccc--ccch--hhhhccCCEEEEc
Q 001301 593 TEALQIRANPETE--NVFN--DTFWENLNVVVNA 622 (1104)
Q Consensus 593 i~~~~~~v~~~~~--~~~~--~~f~~~~DvVi~a 622 (1104)
+..+..++.++.. ..++ .+.|...|++||+
T Consensus 60 ~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 60 AHGVAFDVTDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 5566666654321 1111 1224566777765
No 417
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=82.93 E-value=3.4 Score=48.52 Aligned_cols=108 Identities=9% Similarity=0.071 Sum_probs=64.0
Q ss_pred hhcCeEEEEcC-ChhhHHHHHHHHHhC-C-ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCC-----
Q 001301 117 LFASNILISGM-QGLGAEIAKNLILAG-V-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA----- 188 (1104)
Q Consensus 117 L~~s~VlIiG~-gglGseiaKnLvlaG-V-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~----- 188 (1104)
....+|||.|+ |++|+++++.|+..+ + .+|.+++...-. . .+.++|.+....
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~-------------------~-~~~~~l~~~~~~~~~~~ 130 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD-------------------E-DARRRLEKTFDSGDPEL 130 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH-------------------H-HHHHHHHGGGCSSCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc-------------------H-HHHHHHHHHHHhcchhh
Confidence 35678999996 669999999999983 1 367777643211 1 111222221111
Q ss_pred ---------cEEEEeecccc-------h----hhhcCCceEEEecC-------------CHhHhhhHHHHHHHcCCCcce
Q 001301 189 ---------VAISALTTELT-------K----EKLSDFQAVVFTDI-------------SLEKAVEFDDYCHNHQPPIAF 235 (1104)
Q Consensus 189 ---------V~V~~~~~~l~-------~----e~l~~~dvVV~~~~-------------~~~~~~~ln~~c~~~~~~ipf 235 (1104)
-+++++..+++ . +.+.+.|+||-+.. +......+-++|++.+. ..|
T Consensus 131 ~~~~~~~~~~~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~-~~~ 209 (478)
T 4dqv_A 131 LRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKL-KPF 209 (478)
T ss_dssp HHHHHHHHTTTEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSC-CCE
T ss_pred hhhhhhhccCceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCC-CeE
Confidence 34555555553 1 24567888886642 22334556778888773 278
Q ss_pred EEeeecceeE
Q 001301 236 IKSEVRGLFG 245 (1104)
Q Consensus 236 I~~~~~G~~G 245 (1104)
|..++.+.+|
T Consensus 210 V~iSS~~v~~ 219 (478)
T 4dqv_A 210 TYVSTADVGA 219 (478)
T ss_dssp EEEEEGGGGT
T ss_pred EEEeehhhcC
Confidence 8877766543
No 418
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=82.85 E-value=1.3 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 39 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA------KVALVDW 39 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC------EEEEEEC
Confidence 3467899998 68999999999999997 7888764
No 419
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=82.85 E-value=2.3 Score=45.77 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=56.3
Q ss_pred CcEEEEc-CCcchHHHHHHHHhc-ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 517 AKVFVVG-SGALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 517 ~~VlvvG-~GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
++|+|.| .|.||..+++.|+.. |. ++++++.+.-....+ ..+. ++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~------~V~~~~R~~~~~~~~-------------------------~~~~--v~ 47 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID------HFHIGVRNVEKVPDD-------------------------WRGK--VS 47 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT------TEEEEESSGGGSCGG-------------------------GBTT--BE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC------cEEEEECCHHHHHHh-------------------------hhCC--CE
Confidence 3799999 599999999999987 65 788776543111100 0122 33
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCC-------HHHHHHHhhcccccccc-eEeccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDN-------VNARLYIDQRCLYFQKP-LLESGT 648 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn-------~~aR~~i~~~c~~~~~p-li~~g~ 648 (1104)
.+...+.+. +.+ ...++++|+||.+... +..-..+-+.|...+++ +|..++
T Consensus 48 ~~~~D~~d~-~~l--~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 48 VRQLDYFNQ-ESM--VEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp EEECCTTCH-HHH--HHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEcCCCCH-HHH--HHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 444445432 111 3457789999988653 23334455566666643 554443
No 420
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=82.82 E-value=0.95 Score=47.71 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=56.2
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.+.+|+|+|+|.+|..+++.|...| - ++++|.|.- ++ +.+. +.+.
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g------~-v~vid~~~~-------------------~~----~~~~---~~~~-- 52 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE------V-FVLAEDENV-------------------RK----KVLR---SGAN-- 52 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE------E-EEEESCGGG-------------------HH----HHHH---TTCE--
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC------e-EEEEECCHH-------------------HH----HHHh---cCCe--
Confidence 3568999999999999999997654 3 778874421 11 1222 2333
Q ss_pred eecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQK 641 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~ 641 (1104)
.+.....+ ...+...-++++|.||.++++......+...+...+.
T Consensus 53 ~i~gd~~~--~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~ 97 (234)
T 2aef_A 53 FVHGDPTR--VSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE 97 (234)
T ss_dssp EEESCTTC--HHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred EEEcCCCC--HHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCC
Confidence 33333322 1222222367899999999998877777777766543
No 421
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=82.81 E-value=3.7 Score=45.48 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCC-ceEEEEeCC
Q 001301 120 SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEG 152 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d 152 (1104)
.+|.|||+|.+|+.++..|+..|. ..|+|+|-+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~ 48 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLS 48 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 689999999999999999999995 479999864
No 422
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=82.77 E-value=1.6 Score=47.14 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~------~V~~~~~ 60 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGA------KVAVNYA 60 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 36778888888 68999999999999998 7777653
No 423
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=82.77 E-value=4.9 Score=44.19 Aligned_cols=102 Identities=12% Similarity=0.239 Sum_probs=59.3
Q ss_pred eEEEEcC-ChhhHHHHHHHHHh---CC--ceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 121 NILISGM-QGLGAEIAKNLILA---GV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvla---GV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
+|||.|+ |++|..+++.|+.. |+ .+++++|...-.. +. . .+.++...-.++.+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~-~~--------~------------~~~~~~~~~~~~~~ 60 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAG-NR--------A------------NLAPVDADPRLRFV 60 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTC-CG--------G------------GGGGGTTCTTEEEE
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccC-ch--------h------------hhhhcccCCCeEEE
Confidence 6999985 78999999999996 63 5788887532100 00 0 01111111234444
Q ss_pred ecccch-----hhhcCCceEEEecCC-----------------HhHhhhHHHHHHHcCCCc-ceEEeeecceeE
Q 001301 195 TTELTK-----EKLSDFQAVVFTDIS-----------------LEKAVEFDDYCHNHQPPI-AFIKSEVRGLFG 245 (1104)
Q Consensus 195 ~~~l~~-----e~l~~~dvVV~~~~~-----------------~~~~~~ln~~c~~~~~~i-pfI~~~~~G~~G 245 (1104)
..++++ +.+.+.|+||.+... ......+-+.|++.+ + .||..++.+.+|
T Consensus 61 ~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~--~~~~v~~SS~~vyg 132 (337)
T 1r6d_A 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG--VGRVVHVSTNQVYG 132 (337)
T ss_dssp ECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGC
T ss_pred EcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecchHHhC
Confidence 444432 245678888876431 112245567888887 4 688777766554
No 424
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=82.76 E-value=0.72 Score=49.65 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=57.6
Q ss_pred CcEEEEcC-CcchHHHHHHHHhc--ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 517 AKVFVVGS-GALGCEFLKNLALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 517 ~~VlvvG~-GgiG~evlknLa~~--Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
++|+|.|+ |.||+.+++.|+.. |. ++++++.+. + +... +.. +.+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~------~V~~~~r~~---~----------------~~~~----l~~--~~~-- 47 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS------QIIAIVRNV---E----------------KAST----LAD--QGV-- 47 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG------GEEEEESCT---T----------------TTHH----HHH--TTC--
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC------eEEEEEcCH---H----------------HHhH----Hhh--cCC--
Confidence 47999996 99999999999988 76 788776421 0 1111 111 233
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccC-------CHHHHHHHhhccccccc-ceEecccC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALD-------NVNARLYIDQRCLYFQK-PLLESGTL 649 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD-------n~~aR~~i~~~c~~~~~-pli~~g~~ 649 (1104)
+.+...+.+. +.+ ...++++|+||.+.. |+..-..+-+.|.+.++ .+|..++.
T Consensus 48 ~~~~~D~~d~-~~l--~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 48 EVRHGDYNQP-ESL--QKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp EEEECCTTCH-HHH--HHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred eEEEeccCCH-HHH--HHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3344444432 111 245678999998764 44444556667766665 45544443
No 425
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=82.76 E-value=3.7 Score=48.04 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=61.1
Q ss_pred cCeEEEEcCChh-hHHHHHHHHH--hCC--ceEEEEeCCccCcccCccccccCcCcccchHHHHHH---HHH-HHhCCCc
Q 001301 119 ASNILISGMQGL-GAEIAKNLIL--AGV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI---QKL-QELNNAV 189 (1104)
Q Consensus 119 ~s~VlIiG~ggl-GseiaKnLvl--aGV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~---~~L-~eLNp~V 189 (1104)
..+|.|||+|++ |..++..|+. .+. ..|+|+|-+. |+.|++.+. +.+ ......+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-----------------~~e~~~~~~~~~~~~~~~~~~~~ 69 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI 69 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-----------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence 458999999998 7788888887 554 6799998522 224544432 222 3455566
Q ss_pred EEEEeecccchhhhcCCceEEEecCC--HhHhhhHHHHHHHcC
Q 001301 190 AISALTTELTKEKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 190 ~V~~~~~~l~~e~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~ 230 (1104)
+|.+..+ + .+-+++.|+||.+... .+.+.+...+..++|
T Consensus 70 ~i~~t~D-~-~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g 110 (450)
T 1s6y_A 70 EIHLTLD-R-RRALDGADFVTTQFRVGGLEARAKDERIPLKYG 110 (450)
T ss_dssp EEEEESC-H-HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGT
T ss_pred EEEEeCC-H-HHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcC
Confidence 7766421 1 2467899999998763 344556666777777
No 426
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=82.74 E-value=3.2 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=30.0
Q ss_pred hhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeC
Q 001301 117 LFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
|++++|+|.| .||+|.++++.|+..|...+.++|.
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r 38 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR 38 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEec
Confidence 5678899998 5679999999999999977888775
No 427
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=82.72 E-value=0.77 Score=50.08 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+.+++|+|||+|++|..+++.|+..|+ +++++|.+
T Consensus 126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~------~V~v~~r~ 161 (275)
T 2hk9_A 126 EVKEKSILVLGAGGASRAVIYALVKEGA------KVFLWNRT 161 (275)
T ss_dssp TGGGSEEEEECCSHHHHHHHHHHHHHTC------EEEEECSS
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHcCC------EEEEEECC
Confidence 3678899999999999999999999987 78888643
No 428
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=82.70 E-value=1.8 Score=46.34 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 39 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA------HIVLVAR 39 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 4567899998 68999999999999997 7888764
No 429
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=82.62 E-value=0.58 Score=51.70 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=38.7
Q ss_pred Hhhhhhc--cCHHHHHHhhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 102 HSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 102 Y~RQi~l--~G~e~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
|+|+++- |.......|.+++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 103 ~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 155 (290)
T 3gvx_A 103 NNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSS 155 (290)
T ss_dssp HHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSC
T ss_pred hhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCc-EEEEEeccc
Confidence 4444432 43333345889999999999999999999999998 688888643
No 430
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=82.58 E-value=2 Score=46.01 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 39 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT------AIALLDM 39 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 35678899998 68999999999999997 7888763
No 431
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=82.49 E-value=0.67 Score=53.52 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=32.2
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|+|+|++|..+++.|...|+ ++|+++|.
T Consensus 165 l~g~~VlIiGaG~iG~~~a~~l~~~G~-----~~V~v~~r 199 (404)
T 1gpj_A 165 LHDKTVLVVGAGEMGKTVAKSLVDRGV-----RAVLVANR 199 (404)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCC-----SEEEEECS
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 578899999999999999999999998 89999873
No 432
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=82.46 E-value=0.53 Score=56.09 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHh----cccccC-CCcceEEecCCccccc---Cccc-c-cCcccC-ccccchHHHH
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLAL----MGVSCG-NQGKLTITDDDVIEKS---NLSR-Q-FLFRDW-NIGQAKSTVA 580 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~----~Gv~~~-~~g~i~iiD~D~Ie~s---NLnR-Q-fLf~~~-diG~~Ka~va 580 (1104)
++|.+.||++.|+|+-|+.+++.|.. .|+.-. -..+|.++|..-+=.. +|+. | .+.+.. +.+ .+
T Consensus 316 k~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~~~~-----~L 390 (605)
T 1o0s_A 316 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETT-----SI 390 (605)
T ss_dssp CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCC-----CH
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcCCCC-----CH
Confidence 46888999999999999999999998 564100 0279999997644222 3432 2 222221 111 26
Q ss_pred HHHHHHhCCCcEEe
Q 001301 581 ASAAALINPHLNTE 594 (1104)
Q Consensus 581 a~~l~~~np~~~i~ 594 (1104)
++.++...|++=|-
T Consensus 391 ~eav~~vkpdVlIG 404 (605)
T 1o0s_A 391 LEVIRAARPGALIG 404 (605)
T ss_dssp HHHHHHHCCSEEEE
T ss_pred HHHHhhcCCCEEEE
Confidence 66666666665443
No 433
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=82.40 E-value=1.5 Score=47.14 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 38 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGA------KVTITGR 38 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 5667888888 68999999999999997 7888764
No 434
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=82.39 E-value=1.5 Score=48.22 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHhcCcEEEEcCCc-chHHHHHHHHhcccccCCCcceEEec
Q 001301 513 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 513 kL~~~~VlvvG~Gg-iG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.|.+++++|||.|+ +|..++..|...|. .+++++
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA------tVtv~h 191 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGA------TVSVCH 191 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTC------EEEEEC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 36889999999998 69999999999997 788886
No 435
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}
Probab=82.35 E-value=1.7 Score=48.01 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=28.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccc-cCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVS-CGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~-~~~~g~i~iiD~D 554 (1104)
+.+++|+|.| +|+||+.+++.|+..|.. .-+.-+++++|.+
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~ 54 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF 54 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence 3456899999 699999999999998810 0000267777743
No 436
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=82.34 E-value=1.8 Score=46.02 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=29.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+++++|+|.| .||||.++++.|+..|. +++++|.+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~------~V~~~~r~ 45 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGA------SAVLLDLP 45 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEECT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678899998 78999999999999997 78888643
No 437
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=82.34 E-value=1.6 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=27.5
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+. ++++|.| .||||.++++.|+..|. +++++|.
T Consensus 18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~------~V~~~~r 53 (272)
T 2nwq_A 18 SHMS-STLFITGATSGFGEACARRFAEAGW------SLVLTGR 53 (272)
T ss_dssp ---C-CEEEESSTTTSSHHHHHHHHHHTTC------EEEEEES
T ss_pred CCcC-cEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 3455 6788887 78999999999999997 7888864
No 438
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=82.33 E-value=3.5 Score=48.51 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.3
Q ss_pred cCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 119 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..+|.|||+|..|..+|.+|+..|. .|+++|.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr 36 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNR 36 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcC
Confidence 4689999999999999999999997 5788764
No 439
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=82.31 E-value=1.8 Score=47.34 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred hcCcEEEEcC-CcchHHHHHHHH-hcccccCCCcceE-EecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 515 EEAKVFVVGS-GALGCEFLKNLA-LMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 515 ~~~~VlvvG~-GgiG~evlknLa-~~Gv~~~~~g~i~-iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
++.||.|+|| |.+|..+++.+. .-|+ .|+ ++|.+.-...--.-.-+..-...|
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~------elva~~d~~~~~~~g~d~~~~~g~~~~~------------------ 59 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGV------QLGAALEREGSSLLGSDAGELAGAGKTG------------------ 59 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE------ECCCEECCTTCTTCSCCTTCSSSSSCCS------------------
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecCchhhhhhhHHHHcCCCcCC------------------
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
-....++ .+.+.+.|+||+++ .+.+-..+-..|.+.++|++ +|+.|+
T Consensus 60 ---------v~~~~dl--~~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vV-igTtG~ 106 (273)
T 1dih_A 60 ---------VTVQSSL--DAVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMV-IGTTGF 106 (273)
T ss_dssp ---------CCEESCS--TTTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEE-ECCCCC
T ss_pred ---------ceecCCH--HHHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEE-EECCCC
No 440
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=82.29 E-value=1.5 Score=46.12 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~------~V~~~~r 39 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS------TVIITGT 39 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 4567888887 78999999999999997 7888764
No 441
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=82.27 E-value=0.96 Score=49.38 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=30.3
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
.+++|+|+|+||.|..++..|+..|+ .+|+|++
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~-----~~i~v~n 150 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGF-----EKLKIYA 150 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC-----CCEEEEC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEe
Confidence 35789999999999999999999999 8999985
No 442
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=82.22 E-value=1.3 Score=47.41 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~------~v~~~~r 53 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGA------SVVVNYG 53 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 5677899998 68999999999999997 7777764
No 443
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=82.17 E-value=3.5 Score=43.28 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=29.6
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r 46 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGR 46 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEec
Confidence 467888999985 6899999999999998 5777764
No 444
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=82.17 E-value=2.6 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..||.|||+|.+|+.++..|+..|+. +.++++|-
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~----~ev~L~Di 54 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLA----DEVALVDV 54 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCC----SEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC----CeEEEEEC
Confidence 35899999999999999999999973 58999974
No 445
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=82.14 E-value=2.3 Score=47.08 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=27.4
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+||.+||+|..|..+++||+..|. .+++.|
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~------~v~v~d 33 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY------LLNVFD 33 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC------EEEEEC
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC------eEEEEc
Confidence 479999999999999999999998 788876
No 446
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=82.06 E-value=1.5 Score=49.60 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHH-------HHHH
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAAS-------AAAL 586 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~-------~l~~ 586 (1104)
|.+++|.|||+|.||..+++.|...|. +++.. |....+.+.+.+ .+.+
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~G~------~V~~~-------------------dr~~~~~~~~~~~g~~~~~~l~e 216 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPFGC------NLLYH-------------------DRLQMAPELEKETGAKFVEDLNE 216 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCC------EEEEE-------------------CSSCCCHHHHHHHCCEECSCHHH
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHCCC------EEEEe-------------------CCCccCHHHHHhCCCeEcCCHHH
Q ss_pred hCCCcEEeeecccCCccccccchhhhhccCC---EEEEc
Q 001301 587 INPHLNTEALQIRANPETENVFNDTFWENLN---VVVNA 622 (1104)
Q Consensus 587 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~D---vVi~a 622 (1104)
.-....+.....-.++++.++++.+.+...- ++||+
T Consensus 217 ll~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 255 (351)
T 3jtm_A 217 MLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNN 255 (351)
T ss_dssp HGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEEC
T ss_pred HHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEEC
No 447
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=82.04 E-value=1.7 Score=47.54 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.6
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 32 l~~k~vlVTGas~gIG~aia~~L~~~G~------~V~~~~r 66 (291)
T 3cxt_A 32 LKGKIALVTGASYGIGFAIASAYAKAGA------TIVFNDI 66 (291)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 6778899998 78999999999999997 7888763
No 448
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=81.97 E-value=1.3 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~------~V~~~~r 46 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA------VIHTCAR 46 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5567889887 78999999999999997 7888764
No 449
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=81.91 E-value=1.1 Score=48.49 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.7
Q ss_pred cEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 518 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 518 ~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
+|+|.|+ |.||+.+++.|. .|. +++++|.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~------~V~~~~r~ 32 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PVG------NLIALDVH 32 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TTS------EEEEECTT
T ss_pred eEEEECCCCHHHHHHHHHhh-cCC------eEEEeccc
Confidence 7999996 999999999999 776 78888754
No 450
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=81.86 E-value=3.8 Score=48.22 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..+|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~------~V~v~dr 36 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGY------TVAIYNR 36 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTC------CEEEECS
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCC------EEEEEcC
Confidence 3689999999999999999999997 6888763
No 451
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=81.84 E-value=4.5 Score=44.65 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchH--HHHHHHHHHHhCCCcE-------E
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR--ALASIQKLQELNNAVA-------I 191 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K--aea~~~~L~eLNp~V~-------V 191 (1104)
+|.|||+|.+|+.+|.+|...|. .++++| | .....+.+.+..-.+. +
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~-----------------------r~~~~~~~~~~~~~~~~~~~g~~~~~~ 57 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWG-----------------------TEFDTEILKSISAGREHPRLGVKLNGV 57 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEEC-----------------------CGGGHHHHHHHHTTCCBTTTTBCCCSE
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEE-----------------------ccCCHHHHHHHHHhCcCcccCccccce
Q ss_pred EEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 192 SALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 192 ~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
.+....-..+.+.++|+||.|.-+......+..+.. .++...+|...
T Consensus 58 ~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ 104 (335)
T 1txg_A 58 EIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLIS 104 (335)
T ss_dssp EEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECC
T ss_pred EEecHHhHHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEc
No 452
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=81.78 E-value=3.1 Score=44.60 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=51.5
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceE-EecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEee
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 595 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~-iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~~ 595 (1104)
.||.|+|||.+|..+++.+...+ +.|+ ++|.+.-+ ...+ .
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~------~eLva~~d~~~~~------------------------------~~gv--~- 44 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKG------HEIVGVIENTPKA------------------------------TTPY--Q- 44 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT------CEEEEEECSSCC--------------------------------CCS--C-
T ss_pred eEEEEECcCHHHHHHHHHHHhCC------CEEEEEEecCccc------------------------------cCCC--c-
Confidence 58999999999999999988754 2333 35533210 0111 1
Q ss_pred ecccCCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccCCc
Q 001301 596 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 651 (1104)
Q Consensus 596 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~~g~~G~ 651 (1104)
+..+- +++. +.|+||+++..-.+...+. .+.++|++ .||.|+
T Consensus 45 ----v~~dl-----~~l~-~~DVvIDft~p~a~~~~~~---l~~g~~vV-igTTG~ 86 (243)
T 3qy9_A 45 ----QYQHI-----ADVK-GADVAIDFSNPNLLFPLLD---EDFHLPLV-VATTGE 86 (243)
T ss_dssp ----BCSCT-----TTCT-TCSEEEECSCHHHHHHHHT---SCCCCCEE-ECCCSS
T ss_pred ----eeCCH-----HHHh-CCCEEEEeCChHHHHHHHH---HhcCCceE-eCCCCC
Confidence 11111 1234 8999999986545555553 78899998 577775
No 453
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=81.68 E-value=4.2 Score=43.85 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=29.6
Q ss_pred HhhcCeEEEEc-CChhhHHHHHHHHHhCCceEEEEeC
Q 001301 116 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 116 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
.|.+++|+|.| .||+|.++|+.|+..|. ++.++|.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r 43 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGR 43 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999998 56899999999999998 5777764
No 454
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=81.68 E-value=0.68 Score=53.06 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=35.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+|...||+|+|+|+.|+.+++.|..+|+ ++|+++|.+-
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga-----~~I~v~D~~G 222 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGA-----TKVTVVDKFG 222 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEETTE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCC-----CeEEEEECCC
Confidence 5677899999999999999999999999 8999999875
No 455
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.67 E-value=0.77 Score=50.44 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.1
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..+|+|||+|++|+.++..|++.|. +++++|.+
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~------~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLP------HTTLIGRH 34 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCT------TCEEEESS
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEec
Confidence 3689999999999999999999986 78888865
No 456
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=81.66 E-value=1.5 Score=48.55 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=27.7
Q ss_pred cCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.++|+|.| .|+||+.+++.|+..|. +++++|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~------~V~~~~r 34 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY------LPVVIDN 34 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC------CEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEec
Confidence 46899998 69999999999999986 7888864
No 457
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=81.64 E-value=0.87 Score=49.74 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF------AVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 589999999999999999999998 88998854
No 458
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=81.61 E-value=6 Score=46.74 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc-------
Q 001301 117 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV------- 189 (1104)
Q Consensus 117 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V------- 189 (1104)
+.-.+|.|||+|..|..||.+|+.+|. .++++| +...+++.+.+.+...-...
T Consensus 3 m~~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D-------------------~~~e~l~~~~~~i~~~l~~~~~~g~~~ 62 (483)
T 3mog_A 3 LNVQTVAVIGSGTMGAGIAEVAASHGH-QVLLYD-------------------ISAEALTRAIDGIHARLNSRVTRGKLT 62 (483)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEC-------------------SCHHHHHHHHHHHHHHHHTTTTTTSSC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEE-------------------CCHHHHHHHHHHHHHHHHHHHHcCCCC
Q ss_pred ---------EEEEeecccchhhhcCCceEEEecC-CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 190 ---------AISALTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 190 ---------~V~~~~~~l~~e~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.++..... +.+.+.|+||.+.- +.+....+-+-....-.+-.++.+.+.++
T Consensus 63 ~~~~~~~~~~i~~~~~~---~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti 123 (483)
T 3mog_A 63 AETCERTLKRLIPVTDI---HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI 123 (483)
T ss_dssp HHHHHHHHHTEEEECCG---GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred HHHHHHHHhceeEeCCH---HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC
No 459
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=81.56 E-value=2.1 Score=47.62 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=52.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHh-CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 118 FASNILISGMQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
...+|+|||+|..|...++.|... ++.+|+++|.+ |++..++++++.. .+.+...
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~-- 175 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA-- 175 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--
Confidence 357899999999999999999874 79999999863 3445555555432 2444443
Q ss_pred ccchhhhcCCceEEEecCC
Q 001301 197 ELTKEKLSDFQAVVFTDIS 215 (1104)
Q Consensus 197 ~l~~e~l~~~dvVV~~~~~ 215 (1104)
++ ++.+.+.|+||.|+.+
T Consensus 176 ~~-~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 176 AP-ADIAAQADIVVTATRS 193 (313)
T ss_dssp CH-HHHHHHCSEEEECCCC
T ss_pred CH-HHHHhhCCEEEEccCC
Confidence 22 3567889999998854
No 460
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=81.54 E-value=7.5 Score=45.58 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCc
Q 001301 120 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 153 (1104)
Q Consensus 120 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 153 (1104)
.+|.|||+|..|+-||.+|+.+|. .++++|.+.
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~ 87 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE 87 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence 589999999999999999999998 899998643
No 461
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=81.51 E-value=0.81 Score=49.79 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|+|+||+|..++..|+..|. +++++|.
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~------~V~v~~R 150 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDC------AVTITNR 150 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC------EEEEECS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC------EEEEEEC
Confidence 467899999999999999999999995 7888763
No 462
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=81.50 E-value=3.2 Score=45.99 Aligned_cols=63 Identities=13% Similarity=0.314 Sum_probs=44.0
Q ss_pred HhhcCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001301 116 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 194 (1104)
Q Consensus 116 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~ 194 (1104)
.|.+++|||.|+ ||+|.++++.|+..|. +|.+.|.+ ..+.+.+.+.+....+...+..+
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 64 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR-------------------QDSIDKALATLEAEGSGPEVMGV 64 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 356788999985 6799999999999998 47777642 23555666666666654455555
Q ss_pred eccc
Q 001301 195 TTEL 198 (1104)
Q Consensus 195 ~~~l 198 (1104)
..++
T Consensus 65 ~~Dl 68 (319)
T 3ioy_A 65 QLDV 68 (319)
T ss_dssp ECCT
T ss_pred ECCC
Confidence 4444
No 463
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=81.49 E-value=1.9 Score=46.77 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~------~V~~~~r 55 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGY------RVVIHYH 55 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTC------EEEEEES
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC------eEEEEeC
Confidence 46778888888 78999999999999997 7888764
No 464
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=81.48 E-value=3.9 Score=45.30 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.7
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.||.|||+|.+|+.++..|+..|.+ .+++++|.|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g----~~V~l~D~~ 34 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLA----RELVLLDVV 34 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC----SEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeCC
Confidence 3799999999999999999997641 479999865
No 465
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=81.45 E-value=0.82 Score=51.22 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=28.7
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
..||+|||+|++|+.++..|++.|. .++++|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~------~V~~~~r 34 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE------AINVLAR 34 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC------CEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 4689999999999999999999987 7888874
No 466
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=81.40 E-value=0.43 Score=53.82 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++|.|||.|.||.++++.+...|+ ++...|.
T Consensus 138 ~l~g~tvGIiG~G~IG~~va~~~~~fg~------~v~~~d~ 172 (334)
T 3kb6_A 138 ELNRLTLGVIGTGRIGSRVAMYGLAFGM------KVLCYDV 172 (334)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTC------EEEEECS
T ss_pred eecCcEEEEECcchHHHHHHHhhcccCc------eeeecCC
Confidence 4778899999999999999999999998 7777773
No 467
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=81.38 E-value=4.9 Score=47.30 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=61.0
Q ss_pred hcCeEEEEcCChh-hHHHHHHHHHh--CC--ceEEEEeCCccCcccCccccccCcCcccchHHHHHH----HHHHHhCCC
Q 001301 118 FASNILISGMQGL-GAEIAKNLILA--GV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI----QKLQELNNA 188 (1104)
Q Consensus 118 ~~s~VlIiG~ggl-GseiaKnLvla--GV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~----~~L~eLNp~ 188 (1104)
+..+|.|||+|++ |..+|..|+.. +. ..|+|+|-+. .|++... ..+......
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~ 87 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPD 87 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCC
Confidence 3569999999998 66678888887 65 5699998533 1222222 222345556
Q ss_pred cEEEEeecccchhhhcCCceEEEecCC--HhHhhhHHHHHHHcC
Q 001301 189 VAISALTTELTKEKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 189 V~V~~~~~~l~~e~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~ 230 (1104)
.+|.+..+ + .+-+++.|+||.+... .+.+.+-..+..++|
T Consensus 88 ~~I~~t~D-~-~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g 129 (472)
T 1u8x_X 88 IEFAATTD-P-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYG 129 (472)
T ss_dssp SEEEEESC-H-HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTT
T ss_pred CEEEEECC-H-HHHHcCCCEEEEcCCCccccccchhhhhhhhcC
Confidence 67766422 1 2457899999998863 445566667788888
No 468
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=81.36 E-value=2.1 Score=47.78 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCc-------EEEE
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV-------AISA 193 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V-------~V~~ 193 (1104)
+|.|||+|.+|+.++.+|+.+|. .++++| |...-.+.|++.-..+ .+.+
T Consensus 16 kI~iIG~G~mG~ala~~L~~~G~-~V~~~~-----------------------r~~~~~~~l~~~g~~~~~~~~~~~~~~ 71 (335)
T 1z82_A 16 RFFVLGAGSWGTVFAQMLHENGE-EVILWA-----------------------RRKEIVDLINVSHTSPYVEESKITVRA 71 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEC-----------------------SSHHHHHHHHHHSCBTTBTTCCCCSEE
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-eEEEEe-----------------------CCHHHHHHHHHhCCcccCCCCeeeEEE
Q ss_pred eecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEee
Q 001301 194 LTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 239 (1104)
Q Consensus 194 ~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~ 239 (1104)
..+ ..+ +..+|+||+|.-+......+..+.. .+ ..+|+..
T Consensus 72 ~~~--~~~-~~~aDvVil~vk~~~~~~v~~~l~~-~~--~~vv~~~ 111 (335)
T 1z82_A 72 TND--LEE-IKKEDILVIAIPVQYIREHLLRLPV-KP--SMVLNLS 111 (335)
T ss_dssp ESC--GGG-CCTTEEEEECSCGGGHHHHHTTCSS-CC--SEEEECC
T ss_pred eCC--HHH-hcCCCEEEEECCHHHHHHHHHHhCc-CC--CEEEEEe
No 469
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=81.36 E-value=1.7 Score=49.31 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=30.4
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeC
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
...+|||+|+|++|..++..+...|.+++..+|.
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~ 215 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTR 215 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3578999999999999999999999998988874
No 470
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=81.32 E-value=8.2 Score=41.64 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=56.5
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccc-hHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 120 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGK-NRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk-~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
.+|+|.|+ |++|..+++.|+..|. ++++++.+.-+ .. .. .|++.+ +.+. .+.++ .+..+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~-----------~~--~~~~~~~~~-~~l~--~~~v~--~v~~D 63 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTIT-----------AA--NPETKEELI-DNYQ--SLGVI--LLEGD 63 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCC-----------SS--CHHHHHHHH-HHHH--HTTCE--EEECC
T ss_pred cEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcc-----------cC--ChHHHHHHH-HHHH--hCCCE--EEEeC
Confidence 57999997 7899999999999994 67776643200 00 00 233322 2232 23344 34444
Q ss_pred cch-----hhhcCCceEEEecC--CHhHhhhHHHHHHHcC
Q 001301 198 LTK-----EKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 198 l~~-----e~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~ 230 (1104)
+++ ..+++.|+||.+.. .......+-++|++.+
T Consensus 64 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 64 INDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAG 103 (307)
T ss_dssp TTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcC
Confidence 432 35778999998764 3455566777888876
No 471
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=81.28 E-value=1.8 Score=45.54 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++|+|.| .|+||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~------~V~~~~r 38 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGA------KVMITGR 38 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899998 78999999999999997 7888864
No 472
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=81.26 E-value=4.7 Score=44.46 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.7
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeC
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 151 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 151 (1104)
..+|||.|+ |++|.++++.|+..|. +|+++|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r 34 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN 34 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence 368999985 7899999999999995 6777765
No 473
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=81.23 E-value=3.5 Score=44.71 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=56.4
Q ss_pred cCeEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHh-CCCcEEEEeec
Q 001301 119 ASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTT 196 (1104)
Q Consensus 119 ~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eL-Np~V~V~~~~~ 196 (1104)
.++|+|.|+ |.+|..+++.|+..| .++++++.+.-.. + ...|+. .++++ .+.++ .+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~---------~~~~~~----~~~~l~~~~v~--~v~~ 63 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTAS----S---------NSEKAQ----LLESFKASGAN--IVHG 63 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTT----T---------THHHHH----HHHHHHTTTCE--EECC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccc----c---------CHHHHH----HHHHHHhCCCE--EEEe
Confidence 367999997 789999999999999 4667665432100 0 011222 23333 23343 3444
Q ss_pred ccch-----hhhcCCceEEEecCC--HhHhhhHHHHHHHcC
Q 001301 197 ELTK-----EKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQ 230 (1104)
Q Consensus 197 ~l~~-----e~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~ 230 (1104)
++++ +.+++.|+||.+... ......+-++|++.+
T Consensus 64 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 64 SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVG 104 (308)
T ss_dssp CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcC
Confidence 4432 356789999987653 344566778888876
No 474
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=81.23 E-value=0.96 Score=50.07 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=30.3
Q ss_pred cCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 516 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 516 ~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
..||.|||+|++|+.++..|+..|.. ++++++|.+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~----~~V~l~d~~ 41 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIA----REIVLEDIA 41 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC----SEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeCC
Confidence 46899999999999999999999852 589999854
No 475
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=81.20 E-value=1.8 Score=46.05 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHhcCcEEEEc-CCcchHHHHHHHHhcc---cccCCCcceEEecCC
Q 001301 512 KKLEEAKVFVVG-SGALGCEFLKNLALMG---VSCGNQGKLTITDDD 554 (1104)
Q Consensus 512 ~kL~~~~VlvvG-~GgiG~evlknLa~~G---v~~~~~g~i~iiD~D 554 (1104)
..++.++|+|.| .|+||.++++.|+..| . +++++|.+
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~------~V~~~~r~ 57 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQ------HLFTTCRN 57 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCS------EEEEEESC
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCc------EEEEEecC
Confidence 346677899997 7999999999999998 5 78887743
No 476
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=81.13 E-value=1.9 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~------~V~~~~r 61 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA------RVFICAR 61 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEECS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899998 68999999999999997 7888864
No 477
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=81.13 E-value=2.5 Score=45.46 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.|.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~------~V~~~~r 53 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGC------SVVVASR 53 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 45677899998 78999999999999997 7888764
No 478
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=81.12 E-value=2 Score=48.20 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=31.2
Q ss_pred HHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.....||.|||+|.+|+.++..|+..|.. ..|+++|-
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~----~el~L~Di 52 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLA----DELALVDV 52 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCC----SEEEEECS
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCC----ceEEEEeC
Confidence 45567999999999999999999999873 47999974
No 479
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=81.10 E-value=1.5 Score=47.01 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=25.7
Q ss_pred hcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEe
Q 001301 515 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTIT 551 (1104)
Q Consensus 515 ~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~ii 551 (1104)
++++++|.| .||||.++++.|+..|. +++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~------~vv~~ 34 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY------NIVIN 34 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC------EEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC------EEEEE
Confidence 356788887 68999999999999998 66665
No 480
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=81.10 E-value=4.5 Score=43.87 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=55.4
Q ss_pred cCcEEEEcC-CcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEEe
Q 001301 516 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 594 (1104)
Q Consensus 516 ~~~VlvvG~-GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i~ 594 (1104)
.++|+|.|+ |.+|..+++.|...|. ++++++.+.-. ....|+..+. .+ ..+.+ +
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~------~V~~~~R~~~~--------------~~~~~~~~~~-~~--~~~~~--~ 58 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH------PTYVLFRPEVV--------------SNIDKVQMLL-YF--KQLGA--K 58 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC------CEEEECCSCCS--------------SCHHHHHHHH-HH--HTTTC--E
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC------cEEEEECCCcc--------------cchhHHHHHH-HH--HhCCe--E
Confidence 368999995 9999999999999986 77776543100 0011222211 11 13344 3
Q ss_pred eecccCCccccccchhhhhccCCEEEEccC------CHHHHHHHhhcccccc
Q 001301 595 ALQIRANPETENVFNDTFWENLNVVVNALD------NVNARLYIDQRCLYFQ 640 (1104)
Q Consensus 595 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alD------n~~aR~~i~~~c~~~~ 640 (1104)
.+...+.+. +.+ ...++++|+||++.. |+..-..+-+.|...+
T Consensus 59 ~~~~D~~d~-~~l--~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g 107 (313)
T 1qyd_A 59 LIEASLDDH-QRL--VDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAG 107 (313)
T ss_dssp EECCCSSCH-HHH--HHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSC
T ss_pred EEeCCCCCH-HHH--HHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcC
Confidence 444455432 222 345778999998875 3333344455555544
No 481
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=81.07 E-value=1.3 Score=47.78 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+|++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~------~V~~~~~ 50 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA------KVVVNYA 50 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 36678899998 67999999999999997 7777653
No 482
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=81.05 E-value=1.4 Score=47.70 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=28.9
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 61 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGC------KVIVNYA 61 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677888887 78999999999999997 7877764
No 483
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=80.98 E-value=1.2 Score=50.07 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=58.8
Q ss_pred HHHhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCc
Q 001301 512 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 591 (1104)
Q Consensus 512 ~kL~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~ 591 (1104)
..|..++|.|||+|.+|..++++|...|+ ++++.|.+. .++ .+.+.+. .+
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~------~V~~~~~~~-------------------~~~---~~~a~~~--G~ 61 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV------DVTVGLRSG-------------------SAT---VAKAEAH--GL 61 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTC------CEEEECCTT-------------------CHH---HHHHHHT--TC
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcC------EEEEEECCh-------------------HHH---HHHHHHC--CC
Confidence 46788899999999999999999999997 677776432 011 1111121 12
Q ss_pred EEeeecccCCccccccchhhhhccCCEEEEccCCHHHHHHHh-hccc--ccccceEec
Q 001301 592 NTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYID-QRCL--YFQKPLLES 646 (1104)
Q Consensus 592 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~-~~c~--~~~~pli~~ 646 (1104)
.+. + . .+.+++.|+||.|+-....+..+. +... ..+..++++
T Consensus 62 ~~~------~--~-----~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~ 106 (338)
T 1np3_A 62 KVA------D--V-----KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA 106 (338)
T ss_dssp EEE------C--H-----HHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred EEc------c--H-----HHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence 211 1 0 234678999999997776666666 4432 234556654
No 484
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=80.96 E-value=0.85 Score=50.18 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
|.+++|+|||+|++|..+++.|...|. +++++|..
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~------~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGA------KVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC------EEEEEECC
No 485
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=80.86 E-value=1.9 Score=46.22 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=58.9
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHh--CCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001301 120 SNILISGM-QGLGAEIAKNLILA--GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 196 (1104)
Q Consensus 120 s~VlIiG~-gglGseiaKnLvla--GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~ 196 (1104)
.+|+|.|+ |.+|+.+++.|... |. ++++++.+.- ++. .+.. +.+ +.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~-------------------~~~----~l~~--~~~--~~~~~ 52 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVE-------------------KAS----TLAD--QGV--EVRHG 52 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT-------------------TTH----HHHH--TTC--EEEEC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHH-------------------HHh----HHhh--cCC--eEEEe
Confidence 36999997 77999999999988 74 6777664211 111 1111 233 33344
Q ss_pred ccch-----hhhcCCceEEEecC-------CHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 197 ELTK-----EKLSDFQAVVFTDI-------SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 197 ~l~~-----e~l~~~dvVV~~~~-------~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
++++ +.+++.|+||.+.. +......+-++|++.+. ..||..++.+.
T Consensus 53 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~Ss~~~ 110 (287)
T 2jl1_A 53 DYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGV-KHIAYTGYAFA 110 (287)
T ss_dssp CTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTC-SEEEEEEETTG
T ss_pred ccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCC-CEEEEECCCCC
Confidence 4432 35678899987653 23344567788888882 26777776654
No 486
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=80.83 E-value=1.1 Score=48.52 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=55.7
Q ss_pred eEEEEcC-ChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001301 121 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 199 (1104)
Q Consensus 121 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 199 (1104)
+|+|.|+ |.+|+.+++.|. .| .+++.++.... .-..|+.. .+.+.+.++...+++-|+.-.....
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~----------~~~~D~~d--~~~~~~~~~~~~~d~vih~a~~~~~ 67 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHSK----------EFCGDFSN--PKGVAETVRKLRPDVIVNAAAHTAV 67 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTCS----------SSCCCTTC--HHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred eEEEECCCCHHHHHHHHHhh-cC-CeEEEeccccc----------cccccCCC--HHHHHHHHHhcCCCEEEECcccCCH
Confidence 6999997 779999999999 88 47888776430 11234432 2233333443333322222110000
Q ss_pred hhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecceeE
Q 001301 200 KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 245 (1104)
Q Consensus 200 ~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~~G 245 (1104)
.......+-. -..+......+-++|++.+ +.||..++.+.+|
T Consensus 68 ~~~~~~~~~~--~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~vy~ 109 (299)
T 1n2s_A 68 DKAESEPELA--QLLNATSVEAIAKAANETG--AWVVHYSTDYVFP 109 (299)
T ss_dssp HHHTTCHHHH--HHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSC
T ss_pred hhhhcCHHHH--HHHHHHHHHHHHHHHHHcC--CcEEEEecccEEe
Confidence 0000000000 0001223456778888888 7899888877665
No 487
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=80.83 E-value=0.97 Score=49.74 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=29.1
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 88999854
No 488
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=80.76 E-value=1.8 Score=46.83 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~------~V~~~~r 38 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA------NVTITGR 38 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 5667888887 78999999999999997 7888874
No 489
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=80.76 E-value=0.89 Score=54.64 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.5
Q ss_pred cEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 518 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 518 ~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
+++|||.|.||+|++..|+++|. ++||+..+.
T Consensus 225 ~lvIIGgG~IGlE~A~~~~~lG~------~VTii~~~~ 256 (542)
T 4b1b_A 225 KTLVVGASYVALECSGFLNSLGY------DVTVAVRSI 256 (542)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC------CEEEEESSC
T ss_pred eEEEECCCHHHHHHHHHHHhcCC------eEEEecccc
Confidence 68999999999999999999998 889876543
No 490
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=80.75 E-value=4 Score=46.26 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=0.0
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcE-------
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVA------- 190 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~------- 190 (1104)
...+|.|||+|..|+.+|..|+..| ..++++| |-+...+.+++..-...
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G-~~V~l~~-----------------------r~~~~~~~i~~~~~~~~~l~g~~l 83 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKG-QKVRLWS-----------------------YESDHVDEMQAEGVNNRYLPNYPF 83 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTT-CCEEEEC-----------------------SCHHHHHHHHHHSSBTTTBTTCCC
T ss_pred cCCeEEEECccHHHHHHHHHHHHCC-CeEEEEe-----------------------CCHHHHHHHHHcCCCcccCCCCcc
Q ss_pred ---EEEeecccchhhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEe
Q 001301 191 ---ISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 238 (1104)
Q Consensus 191 ---V~~~~~~l~~e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~ 238 (1104)
+.+..+ ..+.+.+.|+||.+.-+...+..+.++.....+..++|++
T Consensus 84 ~~~i~~t~d--~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 84 PETLKAYCD--LKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp CTTEEEESC--HHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred CCCeEEECC--HHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEE
No 491
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=80.74 E-value=1.8 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=26.8
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEec
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 552 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD 552 (1104)
+.+++++|.| .||||.++++.|+..|. ++++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~------~Vv~~~ 58 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF------TVVINY 58 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC------EEEEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC------EEEEEc
Confidence 5678889998 68999999999999998 676654
No 492
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=80.71 E-value=3.3 Score=45.89 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred hcCeEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001301 118 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 197 (1104)
Q Consensus 118 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~L~eLNp~V~V~~~~~~ 197 (1104)
...+|+|||+|++|+.+|..|+.+|. .++++ . -.........+.+.-..|..........
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~------------------~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 77 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-A------------------RPQHVQAIEATGLRLETQSFDEQVKVSA 77 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-C------------------CHHHHHHHHHHCEEEECSSCEEEECCEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-E------------------cHhHHHHHHhCCeEEEcCCCcEEEeeee
Q ss_pred cch-hhhcCCceEEEecCCHhHhhhHHHHHHHcCCCcceEEeeecce
Q 001301 198 LTK-EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 243 (1104)
Q Consensus 198 l~~-e~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ipfI~~~~~G~ 243 (1104)
.++ +.+.++|+||+|.-+......+..+....++. ..|..-..|+
T Consensus 78 ~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~-~~iv~~~nGi 123 (318)
T 3hwr_A 78 SSDPSAVQGADLVLFCVKSTDTQSAALAMKPALAKS-ALVLSLQNGV 123 (318)
T ss_dssp ESCGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTT-CEEEEECSSS
T ss_pred eCCHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCC-CEEEEeCCCC
No 493
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=80.69 E-value=2.6 Score=45.38 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++++|.| .||||.++++.|+..|. +++++|.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~------~V~~~~r 53 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA------RVYTCSR 53 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899998 68999999999999997 7888764
No 494
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=80.63 E-value=3.8 Score=46.03 Aligned_cols=35 Identities=6% Similarity=-0.029 Sum_probs=26.6
Q ss_pred hhcCeEEEEcCChhhH-HHHHHHHHh-CCceEEEEeC
Q 001301 117 LFASNILISGMQGLGA-EIAKNLILA-GVKSVTLHDE 151 (1104)
Q Consensus 117 L~~s~VlIiG~gglGs-eiaKnLvla-GVg~itLvD~ 151 (1104)
++..+|.|||+|.+|. ..+..|... |+.-+.++|.
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~ 61 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASR 61 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEES
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 3456899999999998 789998876 5554556665
No 495
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=80.59 E-value=2.7 Score=46.96 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=49.6
Q ss_pred hcCcEEEEcCCcchHHHHHHHHhc-ccccCCCcceEEecCCcccccCcccccCcccCccccchHHHHHHHHHHhCCCcEE
Q 001301 515 EEAKVFVVGSGALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 593 (1104)
Q Consensus 515 ~~~~VlvvG~GgiG~evlknLa~~-Gv~~~~~g~i~iiD~D~Ie~sNLnRQfLf~~~diG~~Ka~vaa~~l~~~np~~~i 593 (1104)
...+|+|||+|++|..+++.|... ++ .++++.|.+ ..|++.+++.+.... +.+
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~-----~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~ 177 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDI-----GEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISA 177 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCC-----CEEEEECSS-------------------HHHHHHHHHHHHHTT--CCE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhcC--ceE
Confidence 457899999999999999999874 56 688887632 346666666665421 222
Q ss_pred eeecccCCccccccchhhhhccCCEEEEccCC
Q 001301 594 EALQIRANPETENVFNDTFWENLNVVVNALDN 625 (1104)
Q Consensus 594 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 625 (1104)
. +. + . .+.. ++|+|++|+-+
T Consensus 178 ~-~~-----~----~-~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 178 S-VQ-----P----A-EEAS-RCDVLVTTTPS 197 (322)
T ss_dssp E-EC-----C----H-HHHT-SSSEEEECCCC
T ss_pred E-EC-----C----H-HHHh-CCCEEEEeeCC
Confidence 2 21 1 1 2345 79999999864
No 496
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=80.58 E-value=5 Score=46.90 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred eEEEEcCChhhHHHHHHHHHhCCceEEEEeCCccCcccCccccccCcCcccchHHHHHHHH------------HHHhCCC
Q 001301 121 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK------------LQELNNA 188 (1104)
Q Consensus 121 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Kaea~~~~------------L~eLNp~ 188 (1104)
+|.|||+|.+|..+|.+|+..|. .++++| +...|++.+.+. +++.-..
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D-------------------~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~ 63 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGA-NVRCID-------------------TDRNKIEQLNSGTIPIYEPGLEKMIARNVKA 63 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEC-------------------SCHHHHHHHHHTCSCCCSTTHHHHHHHHHHT
T ss_pred EEEEECcCHHHHHHHHHHHhcCC-EEEEEE-------------------CCHHHHHHHHcCCCcccCCCHHHHHHhhccc
Q ss_pred cEEEEeecccchhhhcCCceEEEecCCH----------hHhhhHHHHHHHcCCCcceEEeee
Q 001301 189 VAISALTTELTKEKLSDFQAVVFTDISL----------EKAVEFDDYCHNHQPPIAFIKSEV 240 (1104)
Q Consensus 189 V~V~~~~~~l~~e~l~~~dvVV~~~~~~----------~~~~~ln~~c~~~~~~ipfI~~~~ 240 (1104)
-.+.+..+ ..+.+.+.|+||.|..+. .....+..+.........+|..++
T Consensus 64 ~~l~~t~d--~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST 123 (450)
T 3gg2_A 64 GRLRFGTE--IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST 123 (450)
T ss_dssp TSEEEESC--HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred CcEEEECC--HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
No 497
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=80.57 E-value=1.5 Score=46.30 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 513 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 513 kL~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
.+++++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~------~V~~~~r 46 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS------KVIISGS 46 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEcC
Confidence 35677899998 78999999999999997 7888764
No 498
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=80.46 E-value=0.89 Score=50.17 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCC
Q 001301 514 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 554 (1104)
Q Consensus 514 L~~~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D 554 (1104)
|.+++|+|||+|.+|..+++.|...|. +++++|.+
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~------~V~~~d~~ 189 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGA------NVKVGARS 189 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTC------EEEEEESS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC------EEEEEECC
Confidence 567899999999999999999999887 78888743
No 499
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=80.44 E-value=1 Score=48.70 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=29.2
Q ss_pred CcEEEEcCCcchHHHHHHHHhcccccCCCcceEEecCCc
Q 001301 517 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 555 (1104)
Q Consensus 517 ~~VlvvG~GgiG~evlknLa~~Gv~~~~~g~i~iiD~D~ 555 (1104)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~------~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH------EVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------EEEEECSSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC------CEEEEEcCc
Confidence 379999999999999999999987 889988653
No 500
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=80.43 E-value=1.7 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CCcchHHHHHHHHhcccccCCCcceEEecC
Q 001301 514 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 553 (1104)
Q Consensus 514 L~~~~VlvvG-~GgiG~evlknLa~~Gv~~~~~g~i~iiD~ 553 (1104)
+++++|+|.| .||||.++++.|+..|. +++++|.
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~------~V~~~~r 66 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGA------DVAIWYN 66 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTC------EEEEEES
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678899997 78999999999999997 7888874
Done!