Query 001302
Match_columns 1104
No_of_seqs 667 out of 4057
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 21:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 2E-170 5E-175 1507.3 59.9 908 101-1102 184-1154(1373)
2 KOG0385 Chromatin remodeling c 100.0 1E-148 2E-153 1266.9 52.4 737 275-1102 157-916 (971)
3 PLN03142 Probable chromatin-re 100.0 4E-125 8E-130 1169.8 60.4 766 272-1102 157-947 (1033)
4 KOG0386 Chromatin remodeling c 100.0 4.1E-98 9E-103 874.6 32.3 506 272-810 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 1.6E-95 3E-100 835.1 41.7 464 274-761 387-913 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 2.5E-94 5.4E-99 839.2 36.3 479 274-776 604-1429(1958)
7 KOG0388 SNF2 family DNA-depend 100.0 7E-93 1.5E-97 797.1 33.2 457 274-759 557-1177(1185)
8 KOG0383 Predicted helicase [Ge 100.0 1.3E-94 2.8E-99 850.6 19.5 622 46-690 42-696 (696)
9 KOG0387 Transcription-coupled 100.0 4.2E-91 9E-96 800.3 40.0 486 276-779 197-702 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 2.2E-84 4.7E-89 767.4 38.6 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 1.1E-72 2.3E-77 669.9 42.8 453 284-760 237-731 (776)
12 KOG1015 Transcription regulato 100.0 2.8E-69 6.1E-74 621.1 34.9 470 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 3.3E-66 7.1E-71 564.1 36.0 470 273-774 173-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 8.7E-66 1.9E-70 582.7 35.6 473 273-774 314-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 1.7E-64 3.7E-69 653.8 40.4 474 281-776 334-865 (866)
16 KOG1016 Predicted DNA helicase 100.0 3.2E-58 6.9E-63 520.5 26.3 470 284-778 253-892 (1387)
17 KOG1000 Chromatin remodeling p 100.0 3.7E-56 8E-61 487.1 31.8 409 285-756 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 1.1E-53 2.4E-58 530.7 35.3 417 284-760 151-629 (956)
19 KOG1001 Helicase-like transcri 100.0 9.8E-49 2.1E-53 470.2 24.3 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 2E-41 4.4E-46 383.1 21.0 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.6E-38 3.5E-43 382.8 34.8 340 283-745 253-616 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.3E-33 2.9E-38 359.0 39.3 430 284-753 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 1.4E-31 3.1E-36 322.8 23.0 256 302-584 372-689 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 5.7E-29 1.2E-33 278.1 33.3 420 284-752 14-497 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.8E-29 6E-34 296.2 30.9 362 283-748 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-28 4.7E-33 294.4 32.3 338 283-736 112-455 (501)
27 PF06461 DUF1086: Domain of Un 100.0 5.8E-30 1.3E-34 241.6 13.3 133 936-1069 9-142 (145)
28 PTZ00110 helicase; Provisional 99.9 2.5E-23 5.4E-28 252.3 30.9 318 285-736 152-484 (545)
29 PRK01297 ATP-dependent RNA hel 99.9 3.5E-23 7.5E-28 248.9 28.5 314 285-735 109-441 (475)
30 TIGR00614 recQ_fam ATP-depende 99.9 4.7E-23 1E-27 246.9 29.4 308 284-730 10-329 (470)
31 KOG0354 DEAD-box like helicase 99.9 5.6E-22 1.2E-26 235.0 37.2 422 284-751 61-545 (746)
32 PRK10590 ATP-dependent RNA hel 99.9 7.9E-23 1.7E-27 244.2 28.5 309 285-729 23-347 (456)
33 PRK11776 ATP-dependent RNA hel 99.9 6.3E-23 1.4E-27 246.0 27.7 313 285-736 26-349 (460)
34 PLN00206 DEAD-box ATP-dependen 99.9 1E-22 2.2E-27 246.3 29.1 314 284-736 142-475 (518)
35 PRK04837 ATP-dependent RNA hel 99.9 1.3E-22 2.8E-27 240.7 25.9 313 285-735 30-361 (423)
36 PRK11192 ATP-dependent RNA hel 99.9 4.1E-22 9E-27 237.3 30.2 313 284-730 22-348 (434)
37 KOG1123 RNA polymerase II tran 99.9 3.2E-23 7E-28 228.6 18.7 340 282-741 299-658 (776)
38 PRK11634 ATP-dependent RNA hel 99.9 1.1E-21 2.4E-26 240.0 32.2 310 284-729 27-347 (629)
39 PRK04537 ATP-dependent RNA hel 99.9 4.2E-22 9.1E-27 242.4 28.0 308 285-729 31-359 (572)
40 PRK11057 ATP-dependent DNA hel 99.9 8.8E-22 1.9E-26 242.1 27.8 304 284-728 24-337 (607)
41 KOG0331 ATP-dependent RNA heli 99.9 2.3E-21 5.1E-26 223.6 28.4 312 285-729 113-443 (519)
42 TIGR01389 recQ ATP-dependent D 99.9 2E-21 4.4E-26 239.5 29.8 304 284-728 12-325 (591)
43 PTZ00424 helicase 45; Provisio 99.9 2.8E-21 6E-26 228.2 27.6 316 284-736 49-374 (401)
44 PLN03137 ATP-dependent DNA hel 99.9 9.8E-21 2.1E-25 234.0 28.5 308 284-731 459-784 (1195)
45 PRK11448 hsdR type I restricti 99.9 4.3E-21 9.2E-26 245.4 26.2 356 283-733 411-815 (1123)
46 PRK13767 ATP-dependent helicas 99.9 3.7E-20 8E-25 235.5 32.5 322 284-731 31-395 (876)
47 KOG0330 ATP-dependent RNA heli 99.9 7E-21 1.5E-25 205.8 21.9 323 285-747 83-416 (476)
48 TIGR00643 recG ATP-dependent D 99.9 6.9E-20 1.5E-24 226.3 32.4 305 284-728 234-560 (630)
49 TIGR03817 DECH_helic helicase/ 99.9 2.8E-20 6.1E-25 232.1 27.9 330 285-744 36-394 (742)
50 PRK10917 ATP-dependent DNA hel 99.9 7.8E-20 1.7E-24 227.2 30.2 305 284-728 260-583 (681)
51 TIGR00580 mfd transcription-re 99.9 6.1E-20 1.3E-24 231.0 29.0 308 284-735 450-769 (926)
52 PRK10689 transcription-repair 99.8 3.1E-19 6.8E-24 229.2 29.7 306 284-728 599-913 (1147)
53 COG0513 SrmB Superfamily II DN 99.8 7.3E-19 1.6E-23 211.5 28.6 329 284-749 50-392 (513)
54 PRK02362 ski2-like helicase; P 99.8 1.6E-18 3.4E-23 218.7 24.8 316 285-735 23-396 (737)
55 TIGR01587 cas3_core CRISPR-ass 99.8 1.5E-17 3.3E-22 193.2 29.0 328 307-750 2-355 (358)
56 PRK00254 ski2-like helicase; P 99.8 2.5E-17 5.5E-22 207.2 31.7 317 284-737 22-389 (720)
57 PRK01172 ski2-like helicase; P 99.8 6.4E-18 1.4E-22 211.7 24.6 302 284-726 21-368 (674)
58 TIGR03714 secA2 accessory Sec 99.8 2.2E-17 4.7E-22 200.4 27.6 117 606-728 406-531 (762)
59 COG1201 Lhr Lhr-like helicases 99.8 1.3E-17 2.9E-22 203.0 25.7 313 284-729 21-357 (814)
60 TIGR00348 hsdR type I site-spe 99.8 4.8E-17 1E-21 201.5 31.1 361 284-734 237-649 (667)
61 KOG0328 Predicted ATP-dependen 99.8 1.2E-17 2.7E-22 173.4 19.7 313 286-736 50-373 (400)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2E-17 4.4E-22 202.5 25.0 107 621-732 269-390 (844)
63 KOG0350 DEAD-box ATP-dependent 99.8 1E-17 2.3E-22 186.3 19.9 356 285-735 159-539 (620)
64 KOG0345 ATP-dependent RNA heli 99.8 1.2E-16 2.6E-21 177.0 24.3 313 284-732 27-362 (567)
65 PRK09200 preprotein translocas 99.7 3E-16 6.5E-21 192.4 29.6 131 605-745 409-547 (790)
66 TIGR00963 secA preprotein tran 99.7 4.7E-17 1E-21 196.2 20.7 120 606-730 387-513 (745)
67 PRK12898 secA preprotein trans 99.7 1.2E-15 2.5E-20 183.4 31.1 131 605-745 454-592 (656)
68 COG4096 HsdR Type I site-speci 99.7 9.8E-17 2.1E-21 190.0 20.8 353 283-733 163-545 (875)
69 PHA02653 RNA helicase NPH-II; 99.7 4.2E-16 9E-21 190.3 26.6 324 282-738 157-516 (675)
70 KOG0335 ATP-dependent RNA heli 99.7 2.9E-16 6.3E-21 178.6 19.3 308 284-730 95-440 (482)
71 KOG0342 ATP-dependent RNA heli 99.7 3.2E-16 7E-21 175.0 19.1 307 285-726 104-429 (543)
72 COG0514 RecQ Superfamily II DN 99.7 1.4E-15 2.9E-20 179.4 25.2 306 284-730 16-333 (590)
73 KOG0333 U5 snRNP-like RNA heli 99.7 7.2E-16 1.6E-20 172.6 21.5 338 285-735 267-623 (673)
74 PRK09751 putative ATP-dependen 99.7 5.5E-16 1.2E-20 200.4 23.7 96 623-721 243-371 (1490)
75 KOG0341 DEAD-box protein abstr 99.7 6.6E-17 1.4E-21 174.1 10.7 338 267-743 168-535 (610)
76 TIGR03158 cas3_cyano CRISPR-as 99.7 7.5E-15 1.6E-19 169.6 26.8 85 623-719 271-357 (357)
77 COG4889 Predicted helicase [Ge 99.7 1.6E-15 3.4E-20 177.1 20.0 395 282-733 158-585 (1518)
78 KOG0343 RNA Helicase [RNA proc 99.7 6.5E-15 1.4E-19 165.7 24.1 324 285-750 91-435 (758)
79 COG1200 RecG RecG-like helicas 99.7 1.3E-14 2.8E-19 170.5 27.5 303 284-725 261-582 (677)
80 PRK09401 reverse gyrase; Revie 99.7 1.2E-14 2.5E-19 187.8 29.7 293 283-722 78-432 (1176)
81 KOG4284 DEAD box protein [Tran 99.7 1.2E-15 2.5E-20 173.9 17.6 310 286-725 48-370 (980)
82 KOG0340 ATP-dependent RNA heli 99.7 9.7E-15 2.1E-19 156.9 23.2 308 285-725 29-352 (442)
83 PRK05580 primosome assembly pr 99.7 4.3E-14 9.3E-19 175.5 31.6 154 284-467 143-305 (679)
84 COG1205 Distinct helicase fami 99.7 8.4E-15 1.8E-19 183.7 25.4 331 285-746 70-432 (851)
85 KOG0348 ATP-dependent RNA heli 99.7 1.3E-14 2.8E-19 162.9 23.9 118 610-730 409-550 (708)
86 cd00079 HELICc Helicase superf 99.6 8.5E-16 1.8E-20 151.1 11.5 120 608-730 12-131 (131)
87 KOG0339 ATP-dependent RNA heli 99.6 1.2E-14 2.6E-19 161.9 21.0 319 285-739 245-578 (731)
88 KOG0338 ATP-dependent RNA heli 99.6 1.7E-14 3.6E-19 161.1 22.0 323 285-746 203-541 (691)
89 PF04851 ResIII: Type III rest 99.6 1.6E-15 3.5E-20 158.3 13.2 165 284-467 2-183 (184)
90 COG1204 Superfamily II helicas 99.6 2E-14 4.4E-19 177.9 24.4 158 285-476 31-198 (766)
91 PRK13104 secA preprotein trans 99.6 1.2E-13 2.7E-18 169.0 27.6 129 606-744 426-592 (896)
92 TIGR00595 priA primosomal prot 99.6 1.1E-13 2.4E-18 165.9 26.5 92 637-731 271-378 (505)
93 KOG0332 ATP-dependent RNA heli 99.6 2.9E-14 6.3E-19 154.1 18.8 325 267-725 88-434 (477)
94 TIGR01054 rgy reverse gyrase. 99.6 7.9E-14 1.7E-18 180.5 24.1 313 284-705 77-408 (1171)
95 KOG0336 ATP-dependent RNA heli 99.6 8.1E-14 1.8E-18 151.6 19.9 313 285-736 242-572 (629)
96 KOG0326 ATP-dependent RNA heli 99.6 6.1E-15 1.3E-19 155.9 10.6 301 286-724 108-419 (459)
97 PRK12906 secA preprotein trans 99.6 1.9E-13 4.2E-18 166.6 24.6 120 606-730 422-549 (796)
98 TIGR01970 DEAH_box_HrpB ATP-de 99.6 2.2E-13 4.8E-18 170.5 25.3 109 623-737 208-337 (819)
99 PRK12904 preprotein translocas 99.6 4.2E-13 9.2E-18 164.4 26.7 130 606-745 412-579 (830)
100 PRK14701 reverse gyrase; Provi 99.6 2.4E-13 5.2E-18 179.4 26.1 336 284-724 78-446 (1638)
101 COG4098 comFA Superfamily II D 99.6 4.3E-12 9.3E-17 136.4 29.8 313 280-733 92-413 (441)
102 PRK09694 helicase Cas3; Provis 99.5 5.7E-13 1.2E-17 166.7 26.2 357 283-724 284-665 (878)
103 COG1202 Superfamily II helicas 99.5 2.3E-13 5E-18 154.0 19.8 314 284-736 215-553 (830)
104 PRK13107 preprotein translocas 99.5 1E-12 2.2E-17 160.6 25.6 120 606-730 431-587 (908)
105 KOG0347 RNA helicase [RNA proc 99.5 2.3E-13 4.9E-18 153.5 17.4 361 284-757 200-612 (731)
106 COG1197 Mfd Transcription-repa 99.5 3.5E-12 7.5E-17 158.1 28.8 370 284-807 593-982 (1139)
107 PRK11664 ATP-dependent RNA hel 99.5 9.4E-13 2E-17 165.3 23.5 111 623-739 211-342 (812)
108 PF00271 Helicase_C: Helicase 99.5 2.7E-14 5.8E-19 127.4 6.5 78 642-722 1-78 (78)
109 KOG0344 ATP-dependent RNA heli 99.5 1.1E-12 2.4E-17 150.5 18.1 115 607-726 372-487 (593)
110 KOG0334 RNA helicase [RNA proc 99.5 1.7E-12 3.6E-17 158.0 19.9 123 607-735 597-719 (997)
111 KOG0346 RNA helicase [RNA proc 99.5 1.4E-12 3E-17 143.8 17.0 120 607-730 252-406 (569)
112 smart00487 DEXDc DEAD-like hel 99.5 1.1E-12 2.4E-17 137.8 15.7 156 283-468 6-172 (201)
113 TIGR00631 uvrb excinuclease AB 99.4 7.3E-11 1.6E-15 145.1 31.7 132 607-744 425-563 (655)
114 PRK12900 secA preprotein trans 99.4 2.2E-11 4.7E-16 149.5 26.3 119 606-729 580-706 (1025)
115 cd00046 DEXDc DEAD-like helica 99.4 1.7E-12 3.8E-17 128.2 13.2 136 305-466 1-144 (144)
116 KOG0952 DNA/RNA helicase MER3/ 99.4 2.3E-11 5.1E-16 146.7 23.2 309 299-739 121-494 (1230)
117 PF11496 HDA2-3: Class II hist 99.4 7.5E-12 1.6E-16 139.0 15.8 216 532-749 4-258 (297)
118 smart00490 HELICc helicase sup 99.4 1.6E-12 3.4E-17 116.4 8.0 81 639-722 2-82 (82)
119 KOG0351 ATP-dependent DNA heli 99.4 1.3E-11 2.8E-16 154.2 18.6 313 284-733 263-591 (941)
120 TIGR01967 DEAH_box_HrpA ATP-de 99.4 4.2E-11 9.1E-16 153.6 23.6 110 623-740 278-408 (1283)
121 PRK05298 excinuclease ABC subu 99.4 6.6E-10 1.4E-14 137.8 33.6 123 607-735 429-556 (652)
122 PRK12899 secA preprotein trans 99.4 2.3E-10 4.9E-15 140.4 28.7 130 606-745 550-687 (970)
123 PRK12326 preprotein translocas 99.3 2.6E-10 5.7E-15 136.6 26.7 130 606-745 409-553 (764)
124 PRK11131 ATP-dependent RNA hel 99.3 1.3E-10 2.9E-15 148.5 24.6 109 623-739 285-414 (1294)
125 KOG0327 Translation initiation 99.3 2.1E-11 4.5E-16 133.8 14.6 311 286-736 49-370 (397)
126 COG1203 CRISPR-associated heli 99.3 1.3E-10 2.9E-15 146.0 23.0 356 284-752 194-568 (733)
127 KOG0337 ATP-dependent RNA heli 99.3 1.6E-11 3.6E-16 135.0 12.6 313 285-736 43-368 (529)
128 cd00268 DEADc DEAD-box helicas 99.2 1.9E-10 4.1E-15 122.5 15.6 153 285-467 21-185 (203)
129 PRK13103 secA preprotein trans 99.2 1.2E-09 2.7E-14 134.0 24.0 121 605-730 430-587 (913)
130 PF00270 DEAD: DEAD/DEAH box h 99.2 1.2E-10 2.6E-15 120.0 13.1 155 288-472 2-167 (169)
131 PF09111 SLIDE: SLIDE; InterP 99.2 4E-12 8.8E-17 120.3 -0.9 69 1024-1101 1-69 (118)
132 COG0556 UvrB Helicase subunit 99.1 2.7E-08 5.8E-13 113.4 29.2 132 613-748 432-571 (663)
133 KOG0951 RNA helicase BRR2, DEA 99.1 1.9E-09 4.1E-14 132.0 20.0 72 648-723 607-689 (1674)
134 PRK12903 secA preprotein trans 99.1 1.4E-08 3E-13 123.6 26.9 120 606-730 408-535 (925)
135 TIGR01407 dinG_rel DnaQ family 99.1 1.9E-09 4.1E-14 138.3 19.0 86 282-368 242-333 (850)
136 KOG0353 ATP-dependent DNA heli 99.1 5.3E-09 1.1E-13 113.2 19.1 298 284-715 93-405 (695)
137 KOG0352 ATP-dependent DNA heli 99.1 1E-08 2.2E-13 113.2 20.5 319 288-731 23-359 (641)
138 PF13872 AAA_34: P-loop contai 98.9 1.3E-08 2.8E-13 111.1 14.0 233 280-550 32-302 (303)
139 COG1110 Reverse gyrase [DNA re 98.9 1.6E-07 3.6E-12 114.3 23.8 126 284-440 81-215 (1187)
140 CHL00122 secA preprotein trans 98.9 1.4E-07 3E-12 115.8 22.6 84 606-693 406-490 (870)
141 TIGR00596 rad1 DNA repair prot 98.9 7.8E-08 1.7E-12 120.1 20.1 150 605-757 267-537 (814)
142 KOG0947 Cytoplasmic exosomal R 98.8 3.2E-08 6.9E-13 118.8 15.0 154 271-466 283-444 (1248)
143 PF06465 DUF1087: Domain of Un 98.8 5.3E-09 1.2E-13 86.6 5.4 42 863-904 21-62 (66)
144 COG0610 Type I site-specific r 98.8 1.1E-07 2.4E-12 122.0 18.8 139 303-470 272-417 (962)
145 KOG1244 Predicted transcriptio 98.8 1.7E-09 3.7E-14 111.9 0.6 50 50-99 280-332 (336)
146 COG1198 PriA Primosomal protei 98.8 1.1E-06 2.3E-11 107.9 24.6 363 284-733 197-602 (730)
147 PRK12902 secA preprotein trans 98.7 8.6E-07 1.9E-11 108.8 23.3 84 606-693 421-505 (939)
148 PRK12901 secA preprotein trans 98.7 1.1E-06 2.4E-11 108.9 24.3 120 606-730 610-737 (1112)
149 PF00385 Chromo: Chromo (CHRro 98.7 3.5E-09 7.7E-14 87.5 1.2 49 193-241 2-54 (55)
150 COG4581 Superfamily II RNA hel 98.7 3.8E-07 8.3E-12 114.1 19.0 157 282-498 116-282 (1041)
151 TIGR00604 rad3 DNA repair heli 98.7 6.5E-07 1.4E-11 113.0 20.4 71 284-354 9-82 (705)
152 PRK07246 bifunctional ATP-depe 98.6 5.3E-06 1.1E-10 105.6 25.4 88 613-706 636-725 (820)
153 PRK08074 bifunctional ATP-depe 98.6 0.00012 2.6E-09 95.1 37.4 90 280-369 252-347 (928)
154 KOG0329 ATP-dependent RNA heli 98.5 1.4E-06 3E-11 90.7 14.5 45 681-725 302-346 (387)
155 KOG1513 Nuclear helicase MOP-3 98.5 1.8E-05 3.8E-10 93.8 25.0 254 268-557 248-543 (1300)
156 KOG4299 PHD Zn-finger protein 98.5 2.5E-08 5.4E-13 115.9 1.5 47 51-97 253-304 (613)
157 KOG0949 Predicted helicase, DE 98.5 6.8E-06 1.5E-10 99.6 21.0 161 286-479 512-682 (1330)
158 KOG0948 Nuclear exosomal RNA h 98.5 6.3E-06 1.4E-10 97.3 19.5 139 284-465 128-275 (1041)
159 COG1199 DinG Rad3-related DNA 98.5 1.6E-05 3.5E-10 100.2 24.4 106 619-729 474-612 (654)
160 TIGR03117 cas_csf4 CRISPR-asso 98.4 9.7E-05 2.1E-09 90.3 29.4 79 290-368 2-87 (636)
161 PRK15483 type III restriction- 98.4 2.2E-06 4.9E-11 107.1 15.5 143 305-467 60-239 (986)
162 KOG0922 DEAH-box RNA helicase 98.4 4E-05 8.7E-10 90.7 22.3 108 626-738 260-392 (674)
163 PF02399 Herpes_ori_bp: Origin 98.3 3.8E-05 8.1E-10 93.9 21.1 113 607-730 266-384 (824)
164 cd00024 CHROMO Chromatin organ 98.3 3.4E-07 7.3E-12 75.6 2.0 49 193-241 4-54 (55)
165 PRK11747 dinG ATP-dependent DN 98.2 0.00018 3.9E-09 90.5 26.4 88 612-706 522-616 (697)
166 KOG0920 ATP-dependent RNA heli 98.2 9.2E-05 2E-09 92.3 21.9 128 609-742 396-550 (924)
167 KOG0950 DNA polymerase theta/e 98.2 3.1E-05 6.7E-10 94.7 17.2 152 285-469 223-390 (1008)
168 PF07652 Flavi_DEAD: Flaviviru 98.2 7.1E-06 1.5E-10 80.2 9.6 130 302-466 2-136 (148)
169 KOG0825 PHD Zn-finger protein 98.2 7.1E-07 1.5E-11 104.5 2.5 49 51-99 215-267 (1134)
170 PF00628 PHD: PHD-finger; Int 98.1 6E-07 1.3E-11 72.8 0.8 44 53-96 1-49 (51)
171 COG1643 HrpA HrpA-like helicas 98.1 0.0001 2.2E-09 92.3 20.2 111 624-739 259-390 (845)
172 smart00488 DEXDc2 DEAD-like he 98.1 1.6E-05 3.5E-10 89.3 12.1 72 284-355 7-84 (289)
173 smart00489 DEXDc3 DEAD-like he 98.1 1.6E-05 3.5E-10 89.3 12.1 72 284-355 7-84 (289)
174 TIGR02562 cas3_yersinia CRISPR 98.1 0.0021 4.6E-08 81.0 30.9 189 287-475 410-643 (1110)
175 COG0653 SecA Preprotein transl 98.1 0.00057 1.2E-08 84.4 24.8 113 606-723 411-534 (822)
176 PF13871 Helicase_C_4: Helicas 98.1 8.5E-06 1.9E-10 89.1 7.7 90 665-757 52-149 (278)
177 smart00298 CHROMO Chromatin or 98.0 1.7E-06 3.6E-11 71.4 1.6 49 193-241 3-52 (55)
178 KOG0349 Putative DEAD-box RNA 98.0 1.2E-05 2.7E-10 89.2 8.2 95 624-721 505-602 (725)
179 KOG0924 mRNA splicing factor A 98.0 0.00015 3.2E-09 85.2 16.5 94 648-744 597-705 (1042)
180 smart00249 PHD PHD zinc finger 97.9 8.6E-06 1.9E-10 64.5 3.2 43 53-95 1-47 (47)
181 cd04718 BAH_plant_2 BAH, or Br 97.9 1.1E-05 2.4E-10 78.8 3.7 28 72-99 1-28 (148)
182 COG5034 TNG2 Chromatin remodel 97.8 1.1E-05 2.5E-10 84.0 2.6 48 47-97 217-269 (271)
183 PF00385 Chromo: Chromo (CHRro 97.8 3.2E-06 7E-11 69.7 -1.6 54 101-173 2-55 (55)
184 PF13086 AAA_11: AAA domain; P 97.7 0.0003 6.5E-09 76.1 12.2 66 285-354 1-75 (236)
185 KOG0957 PHD finger protein [Ge 97.6 1.9E-05 4.2E-10 88.6 1.3 48 49-96 542-596 (707)
186 cd00024 CHROMO Chromatin organ 97.6 2E-05 4.3E-10 64.9 1.1 51 101-172 4-54 (55)
187 KOG1973 Chromatin remodeling p 97.6 2.6E-05 5.6E-10 86.4 1.8 45 51-97 219-267 (274)
188 KOG0923 mRNA splicing factor A 97.6 0.0015 3.3E-08 77.0 16.1 85 649-741 507-611 (902)
189 KOG0953 Mitochondrial RNA heli 97.6 0.00026 5.6E-09 81.9 9.6 99 622-724 356-464 (700)
190 PF07517 SecA_DEAD: SecA DEAD- 97.5 0.0012 2.6E-08 72.6 13.7 122 283-440 75-209 (266)
191 KOG1512 PHD Zn-finger protein 97.5 4.5E-05 9.8E-10 80.1 2.2 46 46-93 309-357 (381)
192 KOG0925 mRNA splicing factor A 97.4 0.0037 7.9E-08 71.4 16.0 62 679-742 315-393 (699)
193 KOG0954 PHD finger protein [Ge 97.1 0.00022 4.7E-09 84.3 2.3 90 49-158 269-364 (893)
194 KOG0926 DEAH-box RNA helicase 97.1 0.0012 2.5E-08 79.3 7.9 65 668-735 621-703 (1172)
195 COG3587 Restriction endonuclea 97.1 0.0022 4.8E-08 78.0 9.9 44 679-722 485-528 (985)
196 KOG2748 Uncharacterized conser 97.0 0.00011 2.3E-09 80.1 -1.1 25 131-155 26-50 (369)
197 KOG0955 PHD finger protein BR1 96.9 0.00061 1.3E-08 86.2 4.2 63 49-116 217-284 (1051)
198 PRK10536 hypothetical protein; 96.9 0.0052 1.1E-07 66.8 10.6 150 286-470 60-216 (262)
199 COG5141 PHD zinc finger-contai 96.9 0.00044 9.5E-09 78.0 2.0 65 47-116 189-258 (669)
200 smart00298 CHROMO Chromatin or 96.9 0.00042 9.2E-09 56.9 1.4 36 131-173 18-53 (55)
201 KOG4150 Predicted ATP-dependen 96.8 0.0051 1.1E-07 71.2 10.0 132 606-742 507-646 (1034)
202 KOG1473 Nucleosome remodeling 96.8 0.00054 1.2E-08 84.4 2.2 47 51-97 344-390 (1414)
203 KOG4443 Putative transcription 96.8 0.00057 1.2E-08 80.5 2.2 49 49-97 66-117 (694)
204 KOG1245 Chromatin remodeling c 96.7 0.00032 6.9E-09 92.4 -0.4 51 49-99 1106-1159(1404)
205 PF02562 PhoH: PhoH-like prote 96.7 0.011 2.3E-07 62.6 10.8 149 286-471 5-160 (205)
206 KOG1131 RNA polymerase II tran 96.5 0.0043 9.4E-08 71.4 6.5 65 278-342 9-75 (755)
207 PF13401 AAA_22: AAA domain; P 96.4 0.0026 5.6E-08 62.3 3.9 35 430-466 89-125 (131)
208 PF13307 Helicase_C_2: Helicas 96.4 0.0064 1.4E-07 62.7 6.6 103 621-728 6-144 (167)
209 KOG4323 Polycomb-like PHD Zn-f 96.4 0.001 2.3E-08 76.7 0.7 53 52-104 169-230 (464)
210 KOG1911 Heterochromatin-associ 96.3 0.0034 7.3E-08 69.9 4.4 57 190-246 47-103 (270)
211 PF09848 DUF2075: Uncharacteri 96.3 0.017 3.6E-07 67.2 9.8 45 307-351 4-49 (352)
212 KOG1802 RNA helicase nonsense 96.2 0.0076 1.7E-07 71.3 6.6 77 284-366 409-486 (935)
213 PF13604 AAA_30: AAA domain; P 96.2 0.051 1.1E-06 57.5 12.3 58 285-345 1-58 (196)
214 PRK14873 primosome assembly pr 96.1 0.028 6E-07 70.0 11.2 125 313-466 169-303 (665)
215 COG0553 HepA Superfamily II DN 95.7 0.0047 1E-07 80.7 2.2 179 285-488 84-289 (866)
216 KOG2748 Uncharacterized conser 95.6 0.0097 2.1E-07 65.3 3.6 50 192-242 11-60 (369)
217 TIGR00376 DNA helicase, putati 95.4 0.14 3.1E-06 63.9 13.5 75 284-364 156-231 (637)
218 KOG0956 PHD finger protein AF1 95.2 0.0081 1.7E-07 70.9 1.6 83 54-154 8-98 (900)
219 PF15446 zf-PHD-like: PHD/FYVE 95.2 0.02 4.2E-07 56.9 4.0 34 63-96 124-175 (175)
220 PF13831 PHD_2: PHD-finger; PD 95.0 0.0041 8.8E-08 46.2 -1.1 34 61-96 2-36 (36)
221 TIGR01448 recD_rel helicase, p 95.0 0.18 3.8E-06 64.1 12.7 65 283-351 321-386 (720)
222 KOG1803 DNA helicase [Replicat 94.9 0.044 9.5E-07 65.1 6.4 63 284-350 184-247 (649)
223 cd00009 AAA The AAA+ (ATPases 94.8 0.25 5.5E-06 48.4 10.9 42 304-346 19-60 (151)
224 KOG0951 RNA helicase BRR2, DEA 94.8 0.028 6E-07 71.2 4.6 143 269-446 1104-1271(1674)
225 KOG1132 Helicase of the DEAD s 94.7 0.2 4.4E-06 62.0 11.3 81 284-364 20-142 (945)
226 PLN03025 replication factor C 94.6 0.4 8.7E-06 54.9 13.4 27 305-331 35-61 (319)
227 PF12340 DUF3638: Protein of u 94.6 0.08 1.7E-06 56.6 6.9 73 282-355 20-92 (229)
228 PRK04296 thymidine kinase; Pro 94.6 0.092 2E-06 55.3 7.4 34 307-341 5-38 (190)
229 TIGR01447 recD exodeoxyribonuc 94.3 0.3 6.5E-06 60.3 12.0 54 288-345 148-205 (586)
230 COG3421 Uncharacterized protei 93.7 0.22 4.8E-06 59.0 8.6 37 310-346 3-40 (812)
231 PRK07003 DNA polymerase III su 93.5 0.76 1.7E-05 57.3 13.1 41 291-331 22-65 (830)
232 PRK09112 DNA polymerase III su 93.4 0.23 4.9E-06 57.5 8.3 42 290-331 28-72 (351)
233 PRK12723 flagellar biosynthesi 93.2 0.75 1.6E-05 53.8 12.1 56 428-483 254-314 (388)
234 TIGR02881 spore_V_K stage V sp 93.2 0.2 4.4E-06 55.5 7.3 28 304-331 42-69 (261)
235 PRK10875 recD exonuclease V su 93.1 0.29 6.3E-06 60.6 9.0 58 286-347 153-213 (615)
236 PRK06526 transposase; Provisio 93.1 0.29 6.4E-06 54.0 8.2 54 291-353 89-142 (254)
237 PRK12402 replication factor C 93.0 0.53 1.2E-05 54.1 10.7 40 293-332 23-64 (337)
238 PRK14956 DNA polymerase III su 93.0 0.38 8.3E-06 57.3 9.4 42 290-331 23-67 (484)
239 KOG1133 Helicase of the DEAD s 92.9 5.2 0.00011 48.8 18.2 81 626-707 631-721 (821)
240 KOG0383 Predicted helicase [Ge 92.8 0.045 9.7E-07 67.3 1.3 71 50-152 176-246 (696)
241 smart00382 AAA ATPases associa 92.6 0.4 8.7E-06 46.4 7.6 44 304-348 2-45 (148)
242 PRK12323 DNA polymerase III su 92.2 1.4 3E-05 54.4 12.7 25 306-330 40-64 (700)
243 PRK05703 flhF flagellar biosyn 91.9 1.1 2.4E-05 53.3 11.5 56 428-483 299-359 (424)
244 COG1875 NYN ribonuclease and A 91.6 0.65 1.4E-05 52.5 8.4 71 271-343 213-286 (436)
245 smart00492 HELICc3 helicase su 91.6 0.81 1.7E-05 45.7 8.4 45 660-706 33-79 (141)
246 PRK08181 transposase; Validate 91.2 1.7 3.6E-05 48.4 11.3 53 286-339 88-140 (269)
247 TIGR02880 cbbX_cfxQ probable R 91.1 0.38 8.2E-06 54.1 6.2 38 304-341 58-98 (284)
248 smart00491 HELICc2 helicase su 90.9 0.79 1.7E-05 45.8 7.6 54 652-706 23-80 (142)
249 TIGR03420 DnaA_homol_Hda DnaA 90.6 1.5 3.2E-05 47.3 10.1 44 302-347 36-79 (226)
250 CHL00181 cbbX CbbX; Provisiona 90.6 0.5 1.1E-05 53.2 6.5 28 304-331 59-86 (287)
251 PRK00440 rfc replication facto 90.6 2.9 6.4E-05 47.5 13.1 26 306-331 40-65 (319)
252 PF05876 Terminase_GpA: Phage 90.6 0.35 7.7E-06 59.5 5.8 167 284-477 15-190 (557)
253 TIGR03015 pepcterm_ATPase puta 90.6 1.4 3.1E-05 48.9 10.2 42 288-329 26-68 (269)
254 cd00167 SANT 'SWI3, ADA2, N-Co 90.4 0.62 1.3E-05 35.8 5.1 42 969-1012 2-43 (45)
255 PRK07940 DNA polymerase III su 90.3 1.2 2.7E-05 52.3 9.7 26 306-331 38-63 (394)
256 PF00249 Myb_DNA-binding: Myb- 90.3 0.58 1.3E-05 37.2 4.9 43 968-1012 3-46 (48)
257 KOG4299 PHD Zn-finger protein 90.3 0.15 3.3E-06 60.7 2.2 47 51-97 47-94 (613)
258 PF06862 DUF1253: Protein of u 90.2 3.3 7.2E-05 49.0 13.0 126 608-735 281-414 (442)
259 PRK05707 DNA polymerase III su 90.2 1.3 2.9E-05 50.7 9.7 47 285-331 3-49 (328)
260 PHA02533 17 large terminase pr 90.0 1.8 3.8E-05 53.0 11.0 55 284-342 58-113 (534)
261 KOG4443 Putative transcription 89.9 0.11 2.5E-06 61.8 0.7 98 50-149 17-126 (694)
262 PRK14960 DNA polymerase III su 89.7 2.2 4.8E-05 52.7 11.4 25 306-330 39-63 (702)
263 PRK14974 cell division protein 89.5 2.2 4.7E-05 49.0 10.6 35 306-341 142-176 (336)
264 PRK07994 DNA polymerase III su 89.5 1.7 3.6E-05 54.2 10.2 41 291-331 22-65 (647)
265 PRK11889 flhF flagellar biosyn 89.5 2.8 6.1E-05 48.7 11.3 36 305-341 242-277 (436)
266 smart00717 SANT SANT SWI3, AD 89.3 0.73 1.6E-05 36.0 4.8 44 968-1013 3-46 (49)
267 PRK06645 DNA polymerase III su 89.0 1.9 4.2E-05 52.2 10.2 42 290-331 26-70 (507)
268 PRK14949 DNA polymerase III su 88.9 1.6 3.4E-05 55.7 9.5 25 307-331 41-65 (944)
269 PRK08691 DNA polymerase III su 88.8 4.2 9.2E-05 50.7 13.0 26 306-331 40-65 (709)
270 PRK14961 DNA polymerase III su 88.7 2.6 5.6E-05 49.2 10.8 41 290-330 21-64 (363)
271 PRK08084 DNA replication initi 88.6 2.7 5.8E-05 45.9 10.2 29 303-331 44-72 (235)
272 PRK08769 DNA polymerase III su 88.4 3.9 8.4E-05 46.7 11.6 48 285-332 4-54 (319)
273 PRK14958 DNA polymerase III su 88.4 4.1 8.8E-05 49.7 12.5 25 307-331 41-65 (509)
274 PHA02544 44 clamp loader, smal 88.3 3.7 8E-05 46.8 11.7 39 429-467 101-141 (316)
275 PRK14955 DNA polymerase III su 88.3 4 8.7E-05 48.3 12.2 42 290-331 21-65 (397)
276 PRK08116 hypothetical protein; 87.8 3.1 6.8E-05 46.3 10.3 44 304-348 114-157 (268)
277 KOG0957 PHD finger protein [Ge 87.8 0.32 7E-06 55.8 2.4 51 49-99 117-180 (707)
278 PF13173 AAA_14: AAA domain 87.7 3.4 7.3E-05 40.3 9.3 26 304-329 2-27 (128)
279 PHA03368 DNA packaging termina 87.7 1.5 3.3E-05 53.6 8.0 129 303-465 253-389 (738)
280 KOG0989 Replication factor C, 87.6 4.2 9.2E-05 45.2 10.6 43 289-331 40-84 (346)
281 PRK14957 DNA polymerase III su 87.5 3.4 7.3E-05 50.6 11.0 24 307-330 41-64 (546)
282 PRK14962 DNA polymerase III su 87.5 3.2 6.8E-05 50.1 10.7 25 306-330 38-62 (472)
283 PRK14952 DNA polymerase III su 87.4 4 8.6E-05 50.5 11.6 41 290-330 18-61 (584)
284 PRK00149 dnaA chromosomal repl 87.2 4.1 8.9E-05 49.1 11.6 41 305-345 149-190 (450)
285 PF13245 AAA_19: Part of AAA d 87.2 1.7 3.6E-05 38.4 6.1 44 304-347 10-56 (76)
286 PF05621 TniB: Bacterial TniB 86.9 4 8.7E-05 45.7 10.2 45 422-466 139-189 (302)
287 PHA03372 DNA packaging termina 86.9 1.7 3.6E-05 52.6 7.7 129 303-465 202-336 (668)
288 TIGR02928 orc1/cdc6 family rep 86.5 2.7 5.9E-05 49.0 9.3 45 286-330 19-66 (365)
289 PRK08451 DNA polymerase III su 86.5 5.5 0.00012 48.6 11.9 25 307-331 39-63 (535)
290 PRK09111 DNA polymerase III su 86.3 5.1 0.00011 49.7 11.9 42 290-331 29-73 (598)
291 PRK08727 hypothetical protein; 86.2 3.5 7.5E-05 44.9 9.3 28 305-332 42-69 (233)
292 PRK14087 dnaA chromosomal repl 86.1 5.8 0.00013 47.7 11.9 47 305-351 142-189 (450)
293 PRK07471 DNA polymerase III su 86.0 5 0.00011 46.8 11.0 43 290-332 24-69 (365)
294 PF13177 DNA_pol3_delta2: DNA 85.9 5.3 0.00011 40.9 10.0 44 290-333 2-48 (162)
295 TIGR00362 DnaA chromosomal rep 85.9 5 0.00011 47.6 11.3 34 306-339 138-172 (405)
296 TIGR02768 TraA_Ti Ti-type conj 85.8 5.1 0.00011 51.3 11.8 60 283-346 350-409 (744)
297 KOG1805 DNA replication helica 85.7 3.8 8.2E-05 51.8 10.0 161 285-468 669-831 (1100)
298 PF00448 SRP54: SRP54-type pro 85.7 2 4.3E-05 45.5 6.9 34 307-341 4-37 (196)
299 PF15446 zf-PHD-like: PHD/FYVE 85.5 0.38 8.2E-06 48.1 1.2 47 53-99 1-61 (175)
300 COG1200 RecG RecG-like helicas 85.5 11 0.00024 46.5 13.6 95 606-704 293-393 (677)
301 PHA03333 putative ATPase subun 85.2 6.5 0.00014 48.6 11.6 54 288-342 172-225 (752)
302 PRK14951 DNA polymerase III su 85.2 3.5 7.7E-05 51.2 9.6 42 290-331 21-65 (618)
303 PRK06871 DNA polymerase III su 85.2 5.4 0.00012 45.6 10.5 47 286-332 3-52 (325)
304 PRK07764 DNA polymerase III su 85.1 6.9 0.00015 50.4 12.5 25 307-331 40-64 (824)
305 PRK14964 DNA polymerase III su 84.9 8 0.00017 46.8 12.2 26 305-330 36-61 (491)
306 PRK14950 DNA polymerase III su 84.7 6.2 0.00014 49.1 11.6 41 290-330 21-64 (585)
307 TIGR00595 priA primosomal prot 84.0 6.5 0.00014 48.0 11.2 96 605-704 6-102 (505)
308 cd01121 Sms Sms (bacterial rad 83.9 5.1 0.00011 46.8 9.8 50 302-352 80-129 (372)
309 PRK08058 DNA polymerase III su 83.7 6.3 0.00014 45.3 10.4 76 289-367 10-88 (329)
310 PRK14969 DNA polymerase III su 83.5 18 0.0004 44.4 14.8 25 306-330 40-64 (527)
311 PRK14963 DNA polymerase III su 83.5 7.2 0.00016 47.5 11.2 42 290-331 19-63 (504)
312 PRK13889 conjugal transfer rel 83.2 7.4 0.00016 51.0 11.7 60 283-346 344-403 (988)
313 PRK14086 dnaA chromosomal repl 83.2 8.4 0.00018 47.6 11.5 43 306-348 316-359 (617)
314 COG0593 DnaA ATPase involved i 83.1 7.5 0.00016 45.6 10.6 51 429-479 176-234 (408)
315 PRK14948 DNA polymerase III su 83.0 6.9 0.00015 48.9 11.0 42 290-331 21-65 (620)
316 PRK05580 primosome assembly pr 82.5 8.6 0.00019 48.8 11.8 95 606-704 172-267 (679)
317 PF14446 Prok-RING_1: Prokaryo 82.4 0.82 1.8E-05 37.1 1.7 30 51-80 5-38 (54)
318 PF06733 DEAD_2: DEAD_2; Inte 82.4 0.7 1.5E-05 47.8 1.7 38 405-442 118-159 (174)
319 PRK04132 replication factor C 82.1 5.5 0.00012 51.1 9.8 49 428-476 630-679 (846)
320 PRK06090 DNA polymerase III su 81.9 11 0.00024 43.0 11.2 48 285-332 3-53 (319)
321 PF12861 zf-Apc11: Anaphase-pr 81.8 0.49 1.1E-05 42.2 0.3 43 54-98 35-80 (85)
322 PRK14953 DNA polymerase III su 81.6 8.3 0.00018 46.8 10.7 41 290-330 21-64 (486)
323 PRK14088 dnaA chromosomal repl 81.6 15 0.00031 44.2 12.7 37 305-341 131-168 (440)
324 COG1198 PriA Primosomal protei 81.3 6.9 0.00015 49.3 10.0 111 536-687 195-306 (730)
325 PF00580 UvrD-helicase: UvrD/R 81.3 3.5 7.6E-05 46.5 7.1 54 286-345 1-57 (315)
326 PRK14722 flhF flagellar biosyn 81.2 16 0.00035 42.6 12.3 40 302-341 135-175 (374)
327 PRK05563 DNA polymerase III su 81.1 11 0.00023 46.8 11.6 26 306-331 40-65 (559)
328 PF01695 IstB_IS21: IstB-like 80.9 2.3 5E-05 44.2 4.9 47 302-353 45-91 (178)
329 PRK11054 helD DNA helicase IV; 80.9 7.3 0.00016 49.3 10.2 85 284-376 195-285 (684)
330 PRK09183 transposase/IS protei 80.4 8 0.00017 42.9 9.3 46 290-340 92-137 (259)
331 KOG0991 Replication factor C, 80.2 3.6 7.8E-05 43.8 5.9 28 304-331 48-75 (333)
332 COG1484 DnaC DNA replication p 80.1 6.3 0.00014 43.5 8.3 65 288-353 89-153 (254)
333 COG3267 ExeA Type II secretory 79.6 8.3 0.00018 41.9 8.6 42 302-345 48-90 (269)
334 PRK06647 DNA polymerase III su 79.6 11 0.00023 46.7 10.9 25 307-331 41-65 (563)
335 PRK06893 DNA replication initi 79.6 12 0.00026 40.6 10.2 27 306-332 41-67 (229)
336 PRK00771 signal recognition pa 79.6 16 0.00034 43.7 11.9 37 305-341 96-132 (437)
337 PRK14954 DNA polymerase III su 79.5 10 0.00022 47.3 10.6 42 290-331 21-65 (620)
338 PRK12422 chromosomal replicati 79.4 7.9 0.00017 46.4 9.4 35 305-340 142-176 (445)
339 PRK06731 flhF flagellar biosyn 79.3 15 0.00032 40.9 10.9 48 303-351 74-125 (270)
340 PRK06964 DNA polymerase III su 79.3 12 0.00027 43.0 10.6 47 286-332 2-49 (342)
341 PRK05642 DNA replication initi 78.8 9.9 0.00021 41.4 9.3 36 430-465 99-138 (234)
342 COG2256 MGS1 ATPase related to 78.7 7.4 0.00016 45.0 8.3 25 303-327 47-71 (436)
343 TIGR01557 myb_SHAQKYF myb-like 78.7 4.9 0.00011 33.4 5.1 48 968-1015 5-55 (57)
344 TIGR00643 recG ATP-dependent D 78.4 17 0.00037 45.8 12.4 97 606-705 266-367 (630)
345 PRK07133 DNA polymerase III su 78.4 12 0.00026 47.2 10.8 25 307-331 43-67 (725)
346 PRK05896 DNA polymerase III su 78.4 18 0.00039 44.7 12.1 26 306-331 40-65 (605)
347 PRK07993 DNA polymerase III su 78.3 13 0.00027 42.9 10.3 47 285-331 2-51 (334)
348 PRK14959 DNA polymerase III su 78.2 14 0.00031 45.7 11.3 25 306-330 40-64 (624)
349 KOG1246 DNA-binding protein ju 78.2 1.6 3.4E-05 57.3 3.2 49 50-98 154-204 (904)
350 TIGR00678 holB DNA polymerase 78.1 18 0.00039 37.8 10.7 27 305-331 15-41 (188)
351 TIGR03345 VI_ClpV1 type VI sec 77.8 11 0.00024 48.9 10.8 42 290-331 192-235 (852)
352 PRK04195 replication factor C 77.3 18 0.00039 44.0 11.9 42 286-328 18-63 (482)
353 KOG0952 DNA/RNA helicase MER3/ 77.3 3 6.5E-05 53.0 5.0 112 301-443 940-1061(1230)
354 KOG1911 Heterochromatin-associ 77.0 1 2.2E-05 50.3 0.9 21 131-151 64-84 (270)
355 PRK00411 cdc6 cell division co 76.9 12 0.00025 44.2 10.0 46 287-332 35-83 (394)
356 TIGR03689 pup_AAA proteasome A 76.9 8.2 0.00018 46.9 8.6 29 302-330 214-242 (512)
357 PRK12727 flagellar biosynthesi 76.1 32 0.0007 41.8 13.0 39 302-340 348-387 (559)
358 PRK13342 recombination factor 75.9 13 0.00028 44.2 10.0 24 305-328 37-60 (413)
359 COG0470 HolB ATPase involved i 75.7 9.5 0.00021 43.4 8.5 30 303-332 22-52 (325)
360 PF00004 AAA: ATPase family as 75.4 4.6 0.0001 38.9 5.1 35 307-345 1-35 (132)
361 CHL00206 ycf2 Ycf2; Provisiona 75.2 8.3 0.00018 52.9 8.5 43 302-348 1628-1670(2281)
362 KOG0442 Structure-specific end 74.9 1.8E+02 0.004 37.0 19.0 56 697-758 546-606 (892)
363 PRK05986 cob(I)alamin adenolsy 74.5 11 0.00025 39.4 7.8 147 302-482 20-173 (191)
364 PRK14965 DNA polymerase III su 74.5 32 0.0007 42.8 13.2 25 307-331 41-65 (576)
365 KOG4628 Predicted E3 ubiquitin 74.4 2 4.4E-05 48.7 2.4 44 52-98 230-276 (348)
366 PRK10865 protein disaggregatio 74.3 14 0.0003 48.3 10.2 37 294-330 187-225 (857)
367 KOG1473 Nucleosome remodeling 74.1 0.57 1.2E-05 59.1 -2.1 50 50-99 427-480 (1414)
368 COG1419 FlhF Flagellar GTP-bin 73.7 26 0.00056 41.0 11.0 70 413-485 268-342 (407)
369 KOG1512 PHD Zn-finger protein 73.2 1 2.2E-05 48.3 -0.2 46 51-96 258-315 (381)
370 cd01120 RecA-like_NTPases RecA 73.2 21 0.00046 35.5 9.5 36 307-343 2-37 (165)
371 PTZ00112 origin recognition co 73.1 22 0.00047 45.6 10.8 45 286-330 759-807 (1164)
372 TIGR00708 cobA cob(I)alamin ad 72.5 7.8 0.00017 40.0 6.0 59 421-479 90-152 (173)
373 COG3973 Superfamily I DNA and 72.5 7 0.00015 47.2 6.2 61 286-351 213-278 (747)
374 PRK12724 flagellar biosynthesi 72.2 20 0.00043 42.4 9.8 22 307-328 226-247 (432)
375 PRK11823 DNA repair protein Ra 71.9 11 0.00024 45.2 8.0 52 302-354 78-129 (446)
376 PRK10917 ATP-dependent DNA hel 71.5 20 0.00043 45.7 10.5 97 606-705 292-393 (681)
377 KOG1133 Helicase of the DEAD s 71.1 6.8 0.00015 47.9 5.8 46 284-329 14-59 (821)
378 PRK07952 DNA replication prote 71.0 14 0.00029 40.6 7.8 62 288-354 79-144 (244)
379 PRK06835 DNA replication prote 71.0 9.7 0.00021 43.7 6.9 49 284-332 159-211 (329)
380 TIGR02639 ClpA ATP-dependent C 70.6 25 0.00054 45.2 11.3 29 303-331 202-230 (731)
381 KOG1244 Predicted transcriptio 70.5 1.4 3.1E-05 47.1 0.1 48 50-97 223-283 (336)
382 cd00561 CobA_CobO_BtuR ATP:cor 70.5 29 0.00062 35.4 9.4 57 421-477 88-148 (159)
383 cd03115 SRP The signal recogni 70.3 25 0.00055 36.0 9.4 35 307-341 3-37 (173)
384 KOG0384 Chromodomain-helicase 69.8 1.5 3.4E-05 56.3 0.2 25 131-155 300-324 (1373)
385 KOG0780 Signal recognition par 69.8 9.1 0.0002 43.8 6.1 105 314-484 111-215 (483)
386 PRK06646 DNA polymerase III su 69.8 9.2 0.0002 38.7 5.6 40 605-644 10-49 (154)
387 PF00308 Bac_DnaA: Bacterial d 69.4 25 0.00054 37.9 9.4 37 428-464 97-137 (219)
388 PTZ00293 thymidine kinase; Pro 69.1 27 0.00059 37.3 9.3 36 307-343 7-42 (211)
389 PRK07399 DNA polymerase III su 69.1 22 0.00048 40.6 9.3 43 290-332 9-54 (314)
390 PRK06305 DNA polymerase III su 69.1 25 0.00053 42.4 10.1 42 290-331 22-66 (451)
391 KOG3612 PHD Zn-finger protein 68.6 4.1 8.9E-05 48.1 3.2 50 49-98 58-108 (588)
392 PF11793 FANCL_C: FANCL C-term 68.5 0.51 1.1E-05 40.9 -3.1 46 52-97 3-63 (70)
393 cd01124 KaiC KaiC is a circadi 68.4 12 0.00026 38.7 6.6 48 307-355 2-49 (187)
394 CHL00095 clpC Clp protease ATP 68.3 2.1E+02 0.0045 37.5 19.0 25 307-331 542-566 (821)
395 PF04364 DNA_pol3_chi: DNA pol 67.8 19 0.00041 35.7 7.4 79 610-706 15-97 (137)
396 PRK08699 DNA polymerase III su 67.5 42 0.00092 38.5 11.2 46 286-331 2-48 (325)
397 PRK13341 recombination factor 67.1 20 0.00043 45.7 9.1 25 304-328 52-76 (725)
398 PRK13826 Dtr system oriT relax 66.9 41 0.0009 44.6 12.1 58 284-345 380-437 (1102)
399 PRK10867 signal recognition pa 66.7 30 0.00065 41.3 10.0 35 307-341 103-138 (433)
400 PRK14873 primosome assembly pr 66.5 25 0.00053 44.4 9.7 94 606-703 170-265 (665)
401 CHL00095 clpC Clp protease ATP 66.4 23 0.0005 46.1 9.8 28 303-330 199-226 (821)
402 PRK05973 replicative DNA helic 66.2 16 0.00034 39.9 6.9 57 297-354 57-113 (237)
403 PRK14971 DNA polymerase III su 66.0 65 0.0014 40.4 13.2 24 307-330 42-65 (614)
404 KOG2543 Origin recognition com 65.6 2.4E+02 0.0051 32.9 16.0 143 284-468 8-160 (438)
405 smart00717 SANT SANT SWI3, AD 65.5 4.6 9.9E-05 31.3 2.1 19 1082-1100 2-20 (49)
406 PRK13833 conjugal transfer pro 65.1 11 0.00024 43.0 5.9 47 281-330 124-170 (323)
407 TIGR02397 dnaX_nterm DNA polym 65.1 48 0.001 38.3 11.4 26 306-331 38-63 (355)
408 TIGR03346 chaperone_ClpB ATP-d 64.8 25 0.00054 46.0 9.7 38 293-330 181-220 (852)
409 KOG1081 Transcription factor N 64.2 7 0.00015 46.9 4.1 47 50-99 88-134 (463)
410 TIGR02640 gas_vesic_GvpN gas v 64.1 17 0.00036 40.4 6.9 49 288-340 5-53 (262)
411 TIGR00959 ffh signal recogniti 64.1 30 0.00065 41.2 9.3 36 306-341 101-137 (428)
412 COG4626 Phage terminase-like p 64.0 41 0.00089 40.7 10.3 59 284-342 60-127 (546)
413 PRK10919 ATP-dependent DNA hel 63.7 12 0.00025 47.6 6.3 53 285-343 2-57 (672)
414 cd01128 rho_factor Transcripti 63.3 32 0.00068 37.9 8.8 26 302-327 14-39 (249)
415 PRK09376 rho transcription ter 62.9 11 0.00023 44.1 5.1 31 301-331 166-196 (416)
416 PF13901 DUF4206: Domain of un 62.8 5.7 0.00012 42.2 2.7 39 50-97 151-197 (202)
417 PRK10416 signal recognition pa 62.6 80 0.0017 36.1 12.2 34 306-340 116-149 (318)
418 TIGR01425 SRP54_euk signal rec 62.5 60 0.0013 38.6 11.4 34 307-341 103-136 (429)
419 PRK10865 protein disaggregatio 62.4 4.8E+02 0.01 34.3 20.7 25 306-330 600-624 (857)
420 PF01393 Chromo_shadow: Chromo 61.9 2.4 5.2E-05 35.3 -0.2 26 192-217 3-28 (58)
421 PF00249 Myb_DNA-binding: Myb- 61.6 5.3 0.00012 31.6 1.7 21 1082-1102 2-22 (48)
422 TIGR00767 rho transcription te 61.0 34 0.00073 40.2 8.7 32 300-331 164-195 (415)
423 KOG1807 Helicases [Replication 60.2 21 0.00047 44.2 7.1 90 285-380 378-473 (1025)
424 TIGR00064 ftsY signal recognit 59.8 70 0.0015 35.7 10.9 33 307-340 75-107 (272)
425 COG1435 Tdk Thymidine kinase [ 59.8 16 0.00035 38.2 5.3 34 429-465 83-118 (201)
426 PF02606 LpxK: Tetraacyldisacc 59.8 54 0.0012 37.6 10.2 122 314-467 47-189 (326)
427 PF13771 zf-HC5HC2H: PHD-like 59.7 4.4 9.6E-05 36.8 1.1 31 49-79 34-67 (90)
428 smart00300 ChSh Chromo Shadow 59.4 6.4 0.00014 33.1 1.9 24 192-215 7-30 (61)
429 CHL00176 ftsH cell division pr 59.2 46 0.001 41.9 10.2 25 304-328 216-240 (638)
430 TIGR01243 CDC48 AAA family ATP 59.2 24 0.00051 45.4 8.0 42 303-348 486-527 (733)
431 TIGR00416 sms DNA repair prote 58.9 23 0.0005 42.6 7.3 52 302-354 92-143 (454)
432 PF03354 Terminase_1: Phage Te 58.7 93 0.002 37.8 12.6 54 288-342 1-63 (477)
433 PF13639 zf-RING_2: Ring finge 58.5 1.1 2.4E-05 34.9 -2.7 39 53-96 2-44 (44)
434 TIGR01074 rep ATP-dependent DN 58.0 38 0.00082 43.0 9.5 65 286-356 2-70 (664)
435 PF06745 KaiC: KaiC; InterPro 57.9 16 0.00034 39.4 5.3 55 302-356 17-71 (226)
436 TIGR01075 uvrD DNA helicase II 57.5 16 0.00035 46.8 6.0 66 285-356 4-73 (715)
437 PRK11034 clpA ATP-dependent Cl 57.2 19 0.00042 46.0 6.5 29 303-331 206-234 (758)
438 PF05127 Helicase_RecD: Helica 57.2 9.5 0.00021 39.5 3.2 35 308-342 1-35 (177)
439 PRK08939 primosomal protein Dn 57.2 17 0.00036 41.4 5.5 46 293-339 143-190 (306)
440 TIGR03499 FlhF flagellar biosy 57.1 39 0.00085 37.9 8.4 39 303-341 193-232 (282)
441 KOG0738 AAA+-type ATPase [Post 56.8 35 0.00075 39.4 7.6 47 305-355 246-292 (491)
442 PF13832 zf-HC5HC2H_2: PHD-zin 56.8 5.3 0.00011 37.9 1.2 29 51-79 55-86 (110)
443 PF06068 TIP49: TIP49 C-termin 56.5 16 0.00035 42.1 5.1 41 303-345 49-89 (398)
444 cd00167 SANT 'SWI3, ADA2, N-Co 56.4 7.7 0.00017 29.4 1.9 19 1083-1101 1-19 (45)
445 PRK05564 DNA polymerase III su 56.2 73 0.0016 36.2 10.6 25 307-331 29-53 (313)
446 PRK11773 uvrD DNA-dependent he 55.7 20 0.00043 46.1 6.4 52 285-342 9-63 (721)
447 PRK06921 hypothetical protein; 55.7 36 0.00078 37.9 7.7 39 303-341 116-154 (266)
448 PRK06995 flhF flagellar biosyn 55.3 68 0.0015 38.8 10.3 33 307-339 259-292 (484)
449 KOG0737 AAA+-type ATPase [Post 55.2 19 0.00042 41.2 5.3 50 302-355 125-174 (386)
450 PF00437 T2SE: Type II/IV secr 55.1 18 0.00039 40.1 5.3 44 295-339 118-161 (270)
451 PRK10689 transcription-repair 54.9 1E+02 0.0022 41.6 12.9 96 606-704 631-731 (1147)
452 cd00034 ChSh Chromo Shadow Dom 54.7 4.9 0.00011 32.9 0.5 22 194-215 2-24 (54)
453 PRK14723 flhF flagellar biosyn 54.6 64 0.0014 41.2 10.3 36 305-340 186-222 (767)
454 PRK14970 DNA polymerase III su 54.3 73 0.0016 37.1 10.4 26 305-330 40-65 (367)
455 PF00265 TK: Thymidine kinase; 54.2 46 0.00099 34.6 7.7 34 308-342 5-38 (176)
456 KOG0740 AAA+-type ATPase [Post 54.2 16 0.00035 43.0 4.7 47 304-354 186-232 (428)
457 TIGR02782 TrbB_P P-type conjug 53.8 28 0.00061 39.4 6.6 44 284-330 115-158 (299)
458 PLN03208 E3 ubiquitin-protein 53.8 5.3 0.00011 41.6 0.6 49 51-99 18-78 (193)
459 COG1474 CDC6 Cdc6-related prot 53.6 85 0.0018 36.7 10.6 47 285-331 20-69 (366)
460 TIGR03877 thermo_KaiC_1 KaiC d 53.6 37 0.0008 37.0 7.3 52 302-354 19-70 (237)
461 cd00730 rubredoxin Rubredoxin; 53.5 7.6 0.00016 31.3 1.4 34 65-99 3-44 (50)
462 cd00162 RING RING-finger (Real 53.5 3.7 7.9E-05 31.2 -0.4 41 54-97 2-43 (45)
463 PHA00012 I assembly protein 53.0 34 0.00073 38.9 6.7 25 308-332 5-29 (361)
464 cd00984 DnaB_C DnaB helicase C 52.7 19 0.00042 39.1 4.9 45 299-343 8-52 (242)
465 PRK14712 conjugal transfer nic 52.6 86 0.0019 43.4 11.6 59 285-345 835-896 (1623)
466 PRK12377 putative replication 52.4 42 0.0009 37.0 7.4 44 304-348 101-144 (248)
467 PRK08533 flagellar accessory p 52.3 40 0.00086 36.6 7.2 52 302-354 22-73 (230)
468 COG1066 Sms Predicted ATP-depe 52.1 54 0.0012 38.3 8.3 51 304-356 93-143 (456)
469 PF14061 Mtf2_C: Polycomb-like 52.0 6.1 0.00013 31.2 0.6 22 196-217 27-49 (50)
470 cd01129 PulE-GspE PulE/GspE Th 51.7 28 0.00062 38.6 6.1 43 286-330 64-106 (264)
471 PHA02929 N1R/p28-like protein; 51.7 5.4 0.00012 43.2 0.4 48 50-101 173-228 (238)
472 TIGR03880 KaiC_arch_3 KaiC dom 51.5 40 0.00088 36.2 7.1 52 303-355 15-66 (224)
473 PRK08760 replicative DNA helic 51.3 41 0.00089 40.8 7.8 63 293-355 218-280 (476)
474 PRK09087 hypothetical protein; 51.0 74 0.0016 34.5 9.0 36 430-465 89-125 (226)
475 PRK10263 DNA translocase FtsK; 50.5 52 0.0011 44.0 8.8 41 303-343 1009-1052(1355)
476 PRK13709 conjugal transfer nic 49.9 88 0.0019 43.8 11.2 61 284-346 966-1029(1747)
477 PRK05728 DNA polymerase III su 49.8 29 0.00064 34.6 5.2 83 605-706 10-96 (142)
478 PF12846 AAA_10: AAA-like doma 49.7 30 0.00064 38.6 6.0 46 304-350 1-46 (304)
479 COG0541 Ffh Signal recognition 49.7 34 0.00073 40.2 6.3 92 307-440 103-194 (451)
480 COG0467 RAD55 RecA-superfamily 49.7 42 0.00091 37.1 7.0 52 302-354 21-72 (260)
481 PF13921 Myb_DNA-bind_6: Myb-l 49.5 11 0.00023 31.3 1.8 19 1084-1102 1-19 (60)
482 COG0552 FtsY Signal recognitio 49.1 80 0.0017 36.0 8.9 125 307-473 142-276 (340)
483 PRK05748 replicative DNA helic 49.0 38 0.00082 40.8 7.0 61 292-352 191-251 (448)
484 KOG4218 Nuclear hormone recept 49.0 9.1 0.0002 42.5 1.5 65 47-111 11-94 (475)
485 PRK07276 DNA polymerase III su 48.8 1.2E+02 0.0027 34.1 10.5 47 285-332 2-50 (290)
486 PF05970 PIF1: PIF1-like helic 48.6 37 0.0008 39.7 6.7 60 285-345 1-62 (364)
487 PRK12726 flagellar biosynthesi 48.5 83 0.0018 36.8 9.2 47 304-351 206-256 (407)
488 PRK14721 flhF flagellar biosyn 48.3 1.3E+02 0.0029 35.7 11.1 55 428-483 269-328 (420)
489 PF13481 AAA_25: AAA domain; P 48.2 24 0.00052 36.7 4.6 54 303-356 31-93 (193)
490 TIGR00580 mfd transcription-re 48.0 78 0.0017 41.7 10.0 96 606-704 482-582 (926)
491 PRK13894 conjugal transfer ATP 48.0 36 0.00078 38.9 6.3 43 284-329 131-173 (319)
492 PF01443 Viral_helicase1: Vira 47.5 24 0.00053 37.9 4.7 41 428-471 62-102 (234)
493 TIGR00682 lpxK tetraacyldisacc 47.1 76 0.0016 36.2 8.6 19 313-331 39-57 (311)
494 PF06564 YhjQ: YhjQ protein; 46.9 27 0.00059 38.1 4.8 35 310-345 8-44 (243)
495 TIGR03881 KaiC_arch_4 KaiC dom 46.6 60 0.0013 34.9 7.5 52 301-353 17-68 (229)
496 KOG2028 ATPase related to the 46.6 62 0.0013 37.1 7.4 36 430-467 224-259 (554)
497 TIGR01243 CDC48 AAA family ATP 46.3 49 0.0011 42.6 7.8 38 302-343 210-247 (733)
498 COG3857 AddB ATP-dependent nuc 46.1 8.6E+02 0.019 32.3 20.5 68 308-376 5-75 (1108)
499 TIGR01547 phage_term_2 phage t 46.0 67 0.0014 37.9 8.4 36 307-342 4-41 (396)
500 TIGR03345 VI_ClpV1 type VI sec 45.2 8.5E+02 0.019 32.0 18.9 33 307-341 599-631 (852)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.2e-170 Score=1507.27 Aligned_cols=908 Identities=42% Similarity=0.710 Sum_probs=743.2
Q ss_pred ccccccccccccCcCCCC------------CcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHH
Q 001302 101 DIDKILDCEMRPTVAGDS------------DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~------------~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~ 168 (1104)
.++.++++|.++...+.. +......+.....||||||+|+||+||+|+|++.|... ..++-+|++
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688899998655433211 00000111244579999999999999999999998643 233446999
Q ss_pred hhhhhhccCCC--CchhhhccCCCccchhhhhhhccCCccceeeeeeeeeccccccccccCCccc-cHHHHHHHHHhhhc
Q 001302 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1104)
Q Consensus 169 ~f~~~~~~~~~--~~e~~~~i~~~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~-~~~~i~~~~~~~~~ 245 (1104)
||.++...... ..++...+.++|.+|||||++....+ .+|||||+||||++||||+..+|.. .+.++++|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543321 12334568899999999999987655 9999999999999999999998864 57788888875432
Q ss_pred cccccccccCCCCcccccccCCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH
Q 001302 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1104)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l 325 (1104)
. ..|.......+.++.|.++..||.|+.|++||+||++|+|||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k---------~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 K---------TLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred c---------cCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 2 1122223345567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 001302 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1104)
Q Consensus 326 ~~l~~~~--~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1104)
.+|+... .||||||||+||+.+|++||..|+ ++|+++|+|+..+|+.|++|||++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998754 689999999999999999999999 9999999999999999999999976641 3
Q ss_pred cccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001302 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1104)
Q Consensus 404 ~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p 483 (1104)
..+|+++||||+++.+|...|..++|.+++|||||||||..++++..|..+..+||||+||||+|||+.|||+|+|||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcC
Q 001302 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1104)
Q Consensus 484 ~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~ 563 (1104)
+.|.++++|...| +..++..+..||..|+|+||||+|+||.+.|||+.|.|+.|+||++|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999998764
Q ss_pred -CchhHHHHHHHHHHHHhCCccccCCCCCCcccc------hHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhH
Q 001302 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1104)
Q Consensus 564 -~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~------~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ 636 (1104)
++..+++|++|+||||||||||+.+++..+... ++.++.+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 445799999999999999999999988765432 3688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHH
Q 001302 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1104)
Q Consensus 637 ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~g 716 (1104)
||||++||..+||+|.||||++.++.|+++||+||+++|+.|||||||||||+||||++||||||||||||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc-------ccCCCHHHHHHHHHhchhhhhcccccCC
Q 001302 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG 789 (1104)
Q Consensus 717 R~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~-------~~~~~~~el~~~l~~ga~~l~~~~~~~~ 789 (1104)
|||||||++.|.||||||++||||.|+++|++||.|+++||++|. .+.++++||.+||+|||+++|.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 999999999999999999999999999999999999999998875 3579999999999999999999987765
Q ss_pred CCcccCCCCHHHHHHHhcCCCCCccccCCCCcchhhhhhhhhhhcccchhHHHHHHHHHHHHHHHhhcccCCCCcchhhH
Q 001302 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1104)
Q Consensus 790 ~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1104)
.+ +.++|||+||.|++...++.++ -..+++++++|+||+|...++.+.+ .. +.-.|
T Consensus 872 s~-----~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw 927 (1373)
T KOG0384|consen 872 SK-----FCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW 927 (1373)
T ss_pred cc-----ccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence 43 5679999999999987665442 3567889999999999986542210 00 11479
Q ss_pred HHHHHHHHHH-----HHHHHHHhcCCCCCCcc--cccccchhhhcccccCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 001302 870 EELLKDRYEV-----HKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1104)
Q Consensus 870 ~~~~~~~~~~-----~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1104)
+.|+++...+ ....+...+...+|.|. +......+. + .+ ++ .++. +.+ +.+
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~~--~~----~~e~--~~~----------~~~- 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-AE--SR----SVEK--SLG----------KKG- 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-cc--cc----cccc--ccc----------ccc-
Confidence 9998875432 22223444554554443 333311111 0 00 00 0000 000 000
Q ss_pred ccccCCCCCCCCCCccccccchhccCCChHHHHHHHHHHHHcCCCCcchhhhc--hhccCCCHHHHHHHHHHHHHhhhhc
Q 001302 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1104)
Q Consensus 943 ~~~~~~~~~~~~pL~e~e~~~l~~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~--~~l~~Ks~~ev~~y~~~f~~~~~e~ 1020 (1104)
++|.+.... ..-.+.||+..+.|+|++++++||.+.+..+.|+ +++..+|++++++.+++.+..|.++
T Consensus 986 ~~r~r~~~~----------~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREILK----------RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred ccccccccc----------cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 112221111 1235689999999999999999999988777787 5788999999999999999999876
Q ss_pred CCCC----cccc---C----CCCC-------Cc--cchhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccC---C
Q 001302 1021 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1104)
Q Consensus 1021 ~~d~----~~~~---~----~i~k-------~~--~k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~---~ 1077 (1104)
+.+. .+.. . +.++ ++ +....|+.|+..+..|.+-|-.....|. +..+.|. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~------~~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN------QFIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc------ccccCCCCccc
Confidence 6432 1111 0 1111 11 3355678888888888887666421221 1222232 2
Q ss_pred CCCCcccChhhhHHHHHHhhhcccc
Q 001302 1078 LRGGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1078 ~~~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
..+++.|+.++|..||+|||+|||-
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGyg 1154 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYG 1154 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccc
Confidence 3489999999999999999999994
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1e-148 Score=1266.90 Aligned_cols=737 Identities=40% Similarity=0.648 Sum_probs=613.4
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CC-CCceEEEeCcccHHHHHHHH
Q 001302 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 275 ~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~s~l~qW~~E~ 352 (1104)
..+|.++.+++|||||++|+|||+..|.+|.|||||||||||||+|+|+++.+|.. .+ .|||||+||+||+.||.+||
T Consensus 157 ~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 157 EDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred cCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999987 33 68999999999999999999
Q ss_pred HHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEE
Q 001302 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432 (1104)
Q Consensus 353 ~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~v 432 (1104)
.+|+|++++++|+|++..|..+++.-+ ....|+|+||||+++.++.+.|++++|.++
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~yl 293 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYL 293 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEE
Confidence 999999999999999999998776422 124899999999999999999999999999
Q ss_pred EEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc---cchHHHHHHHH
Q 001302 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~---~~~~~~~~~L~ 509 (1104)
||||||||||.+|++++.|+.|.+.+||||||||+|||+.|||+|||||.|+.|.+.+.|..+|.. ....+.+.+||
T Consensus 294 vIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh 373 (971)
T KOG0385|consen 294 VIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLH 373 (971)
T ss_pred EechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 23456899999
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhCCccccCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~-~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
.+|+||+|||+|.+|.+.|||+++.+++|+||.+|+++|++++.+....++..+. ....++|++|+||||||||||+++
T Consensus 374 ~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g 453 (971)
T KOG0385|consen 374 KVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG 453 (971)
T ss_pred hhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC
Confidence 9999999999999999999999999999999999999999999999999886554 678999999999999999999999
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHH
Q 001302 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~ 668 (1104)
++|..+.... .+|+.+||||.+|++||++|+++||||||||||++|||||++||..+||.|+||||+|+.++|..+|+
T Consensus 454 ~ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~ 531 (971)
T KOG0385|consen 454 AEPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIE 531 (971)
T ss_pred CCCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHH
Confidence 9987665554 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHH
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~ 748 (1104)
.||++++..|+|||||||||+||||++|||||+||+|||||.|+||++|||||||+|+|.||||||++||||+|+++|..
T Consensus 532 ~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 532 AFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred hcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-----cccCCCHHHHHHHHHhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCCCCccccCCCC--c
Q 001302 749 KMVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--E 821 (1104)
Q Consensus 749 K~~l~~~v~g~~-----~~~~~~~~el~~~l~~ga~~l~~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~--~ 821 (1104)
|+.|+++||+.. ....++++++.+|+++|+..+|...+.+. ++ |||.||.|++..+.+..... .
T Consensus 612 KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~--------~d-Did~il~~~e~kt~e~~~~~~~~ 682 (971)
T KOG0385|consen 612 KLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKESTI--------SD-DIDRILERGEEKTAELNAKEAKL 682 (971)
T ss_pred HhchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhccccc--------ch-hHHHHHHhhhhhccCcchHHHhh
Confidence 999999999543 23457899999999999999998876432 33 99999999997776643210 0
Q ss_pred chhhhhhhh---hhhcccchhHHHHHHHHHHHHHHHhhcccCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 001302 822 DEDGFLKAF---KVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQM 898 (1104)
Q Consensus 822 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 898 (1104)
+.++ +..| .+.+|+..+ ..+. .... .|-+..+..-...-..-...+..|-|..|++
T Consensus 683 ~~~~-~~~~~~~~~y~~eG~d----~~ek--~~~~--------------~wiep~krerk~~d~y~r~~l~~g~~~P~~~ 741 (971)
T KOG0385|consen 683 GESD-LRNFGMISVYNFEGED----YKEK--QSLF--------------KWIEPPKRERKANDAYFREALRVGEPPPKQP 741 (971)
T ss_pred Ccch-hhhcCcceeeccCCcc----hhhh--hhhh--------------hhcCCchhhhhhhhhHHHHHHhcCCCCCCCc
Confidence 1111 1122 233333211 1000 0000 0211111000000000112344444455555
Q ss_pred cccchhhh-cccccCCCCccccccccccCCCCCCCCCCCCCCCCcccccCCCCCCCCCCcccc---ccchhccCCChHHH
Q 001302 899 VSVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQR 974 (1104)
Q Consensus 899 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~e~e---~~~l~~~GF~~~~r 974 (1104)
.+.+..-+ ..+.+...- +-.+|.. ...++.+. ...||+.++ ++.++.+||++|++
T Consensus 742 ~~~d~qf~p~~L~el~~k-ei~~~~k------------------~~e~~kin--~~~~lt~ee~~~k~~ll~~gft~w~k 800 (971)
T KOG0385|consen 742 EVQDFQFFPKRLFELLEK-EIEYYRK------------------TIEQKKIN--NAEPLTQEEEEEKEELLSQGFTNWTK 800 (971)
T ss_pred cccccccCcHHHHHHHHH-HHHHHHH------------------HHHHHhcc--CCCCCCcHHHhhhhhhhhccccchhh
Confidence 54111000 011111000 0001100 00122333 345888775 58999999999999
Q ss_pred HH---HHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhhhcCCCCccccCCCCCCccchhHHHHHHHHHHHH
Q 001302 975 AA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLI 1051 (1104)
Q Consensus 975 r~---F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~~~~i~k~~~k~~~~~~ri~~~~ll 1051 (1104)
+. |++++.|||+++ ++.|++++.+ |++||..|+++||++|.| ++|+++++..|++|+.+++.. .-++.+|
T Consensus 801 ~df~~fi~a~eKygr~d--i~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~l 873 (971)
T KOG0385|consen 801 RDFNQFIKANEKYGRDD--IENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKAL 873 (971)
T ss_pred hhHHHHHHHhhccCcch--hhhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHH
Confidence 95 556777999987 5789999998 999999999999999996 999999999999999888776 4678999
Q ss_pred HHHHHhhcCCCCCCCcccccccccCCCCCCcccChhhhHHHHHHhhhcccc
Q 001302 1052 RDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1052 ~~kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
..|+.+|+ +| +++.+.|+++ +++.|++++|+||+||+||+||.
T Consensus 874 d~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~ 916 (971)
T KOG0385|consen 874 DDKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFD 916 (971)
T ss_pred hhhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccC
Confidence 99999999 67 3589999766 88999999999999999999985
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.7e-125 Score=1169.83 Aligned_cols=766 Identities=37% Similarity=0.602 Sum_probs=608.3
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCcccHHHHH
Q 001302 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1104)
Q Consensus 272 ~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~qW~ 349 (1104)
..+..+|.++. ++|||||++|++||+.++.++.|||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 45677899888 799999999999999999999999999999999999999999998753 346999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001302 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1104)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w 429 (1104)
+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++..+...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999998876655322 124689999999999999999999999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhcc---chHHHHH
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~---~~~~~~~ 506 (1104)
++|||||||++||..|+++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3456788
Q ss_pred HHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 507 ~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
.|+.+|+|+++||+|++|...|||+.+.+++|.||+.|+++|+.++.+....++.+ +....+++++|+||+||+||+|+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 45567899999999999999999
Q ss_pred CCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHH
Q 001302 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~ 666 (1104)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|||+++..+|+.+
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 2678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHH
Q 001302 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1104)
Q Consensus 667 i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~ 746 (1104)
|+.||++++..++||+||+|||+||||++||+||+||+||||+.++||+||||||||+++|.||||+++|||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHHhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCCCCccccCCC--Cc
Q 001302 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DE 821 (1104)
Q Consensus 747 ~~K~~l~~~v~g~~---~~~~~~~~el~~~l~~ga~~l~~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~--~~ 821 (1104)
.+|+.|+..|++.. ....+++++|.+|+++||+.+|+..+. .++|+|||.||+|++..+.+.... .-
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~~--------~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDS--------TITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccCC--------CCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 235689999999999999999964431 357999999999998776543210 00
Q ss_pred chhhhhhhhhhh----cccchhHHHHHHHH-HHHHHHHhhcccCCCCcc-hhhHHHHHHHHHHHHHHHH-HHhcCCCCCC
Q 001302 822 DEDGFLKAFKVA----NFEYIEEVEAAAEE-EAQKLAAENKSSMSNSER-SSYWEELLKDRYEVHKVEE-FNALGKGKRS 894 (1104)
Q Consensus 822 ~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~-~~~~~~~~r~ 894 (1104)
..+. + .|+.. -|++..+......+ ...+....++.+....++ .+| --+.|..+.... ...-.+.+|.
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~re~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 755 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENKLDFKKIVSDNWIDPPKRERKRNY----SESEYFKQAMRQGAPAKPKEPRI 755 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhhhhHhhhccccccccchhhhhccc----chhHHHHHHHhcCCcccCCCCCC
Confidence 1111 1 23321 12221111000000 000000011111100000 000 000000000000 0011233344
Q ss_pred cccccccchhhhc--ccccCCCCccccccccccCCCCCCCCCCCCCCCCcccccCCCCCCCCCCccccc---cchhccCC
Q 001302 895 RKQMVSVEEDDLA--GLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGEG---RSFRVLGF 969 (1104)
Q Consensus 895 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~e~e~---~~l~~~GF 969 (1104)
.|++...+..-+. ++.++..-+.. .|.....++. ... .. ..+.. .++..|||++|. ++|+.+||
T Consensus 756 ~~~~~~~~~q~~~~~~l~~l~~~e~~-~~~~~~~~~~-----~~~--~~-~~~~~--~~~~~~lt~~e~~~k~~l~~~gf 824 (1033)
T PLN03142 756 PRMPQLHDFQFFNVQRLTELYEKEVR-YLMQAHQKGQ-----LKD--TI-DVAEP--EEPGDPLTAEEQEEKEQLLEEGF 824 (1033)
T ss_pred CCCCCCccccCCCHHHHHHHHHHHHH-HHhccccCCc-----hhh--hh-hhccc--cccCCCCCHHHHHHHHHHHhcCc
Confidence 4443331111110 11111111110 1100000000 000 00 01222 234569999874 89999999
Q ss_pred ChHHHH---HHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhhhcCCCCccccCCCCCCccchhHHHHHHH
Q 001302 970 SQNQRA---AFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIA 1046 (1104)
Q Consensus 970 ~~~~rr---~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~~~~i~k~~~k~~~~~~ri~ 1046 (1104)
++|+|| .|+++|.||||.+ +..||.++.+||++||++|+++||+||.| ++|+++++..|++|+.|+++. ..
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~--~~~i~~~~~~k~~~ev~~y~~~f~~~~~~-~~~~~~~~~~ie~~e~~~~~~---~~ 898 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRND--IKSIASEMEGKTEEEVERYAKVFWERYKE-LNDYDRIIKNIERGEARISRK---DE 898 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhH--HHHHHHHhcCCCHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHHH---HH
Confidence 999998 6677888999977 57899999999999999999999999996 999999999999999888776 47
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCcccChhhhHHHHHHhhhcccc
Q 001302 1047 VLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1047 ~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
...+|++||+.|+ +|| .+|+++|+ +++++.|++||||||||++|+|||-
T Consensus 899 ~~~~~~~k~~~~~-~p~-----~~l~~~~~-~~~~~~~~~~~d~~~~~~~~~~g~~ 947 (1033)
T PLN03142 899 IMKAIGKKLDRYK-NPW-----LELKIQYG-QNKGKLYNEECDRFMLCMVHKLGYG 947 (1033)
T ss_pred HHHHHHHHHHHcc-CcH-----HHceeecC-CCCCCcCCHHHHHHHHHHHHHhccc
Confidence 7899999999999 898 67899996 5688999999999999999999984
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.1e-98 Score=874.59 Aligned_cols=506 Identities=43% Similarity=0.727 Sum_probs=447.6
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCcccHHHHH
Q 001302 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1104)
Q Consensus 272 ~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~qW~ 349 (1104)
..+..||..+.||+|++||+.||.||..++.++-+||||||||||||+|+|+++.||++. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 456789999999999999999999999999999999999999999999999999999875 457999999999999999
Q ss_pred HHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001302 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1104)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w 429 (1104)
.||.+|+|.+..+.|.|+++.|..+..-- ...+|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~qi------------------------r~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQQ------------------------RHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHHH------------------------hcccceeeeeeHHHhcCCHHHHhccCC
Confidence 99999999999999999999998664421 237999999999999999999999999
Q ss_pred eEEEEcCcccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhcc---------
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI--------- 499 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~-~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~--------- 499 (1104)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||||+.|..|.+...|.+||...
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 67899999999999999999999999999999999999999999532
Q ss_pred -chH---HHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHH
Q 001302 500 -NQE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQIL--TRRGGAQISLINVV 573 (1104)
Q Consensus 500 -~~~---~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l--~~~~~~~~~l~~~~ 573 (1104)
+.+ -.+.+||++|+||++||.|++|...||.+++.++.|.||..|+.+|+.+.....-.. .++.+....+.|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 122 257899999999999999999999999999999999999999999998865433222 12445567899999
Q ss_pred HHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEE
Q 001302 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1104)
Q Consensus 574 ~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~r 653 (1104)
|+|||+|||||++..++......... ..|+..|||+.+|+++|++|++.|||||.|+||++++++|++||..++++|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998887655443332 78999999999999999999999999999999999999999999999999999
Q ss_pred EecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEe
Q 001302 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1104)
Q Consensus 654 idG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1104)
+||+|+.++|-..++.||.++++.|+||+||+|||+|+||++||||||||+||||+.++||.+|||||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhc--cccccCCCHHHHHHHHHhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCC
Q 001302 734 TRGSIEERMMQMTKKKMVLEHLVVG--RLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1104)
Q Consensus 734 t~~TvEe~i~~~~~~K~~l~~~v~g--~~~~~~~~~~el~~~l~~ga~~l~~~~~~~~~~~~~~~~~~~~id~~l~r~~ 810 (1104)
+.++|||.|+..|..|+..+..|+. .++. .-+.++=+.+|+ .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 9999999999999999999999994 3333 233334333332 23333332211 11246788999998874
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-95 Score=835.15 Aligned_cols=464 Identities=44% Similarity=0.670 Sum_probs=406.7
Q ss_pred ccCCCCCC-CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHH
Q 001302 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 274 ~~~~P~~~-~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E 351 (1104)
+..||..+ .+.+|+|||+-|||||.-++.++-+||||||||||||+|+|||+++|...+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34477766 567999999999999999999999999999999999999999999999865 5799999999999999999
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh---ccccccCCc
Q 001302 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1104)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~---~~~~l~~~~ 428 (1104)
|.+|+|.+.|..|+|+...|..++..-. ....+|||++|||..+.. |..+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998876411 123489999999999964 677899999
Q ss_pred ceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCC-hHHHHHHHhccc-------
Q 001302 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS-LEEFQEEFKDIN------- 500 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~-~~~F~~~f~~~~------- 500 (1104)
|+++|.||+|.|||..|.+|+.|..+++++||||||||+|||+.||++||.|+.|..|.+ .+++..-|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 999999999999999999999999999999999999999999999999999999999975 466666665322
Q ss_pred ----hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHH
Q 001302 501 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1104)
Q Consensus 501 ----~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~~~ 574 (1104)
.++.|.+...+++||+|||.|.+|+++||||..++.+|+|+..|+++|..+++.....++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 14578899999999999999999999999999999999999999999999987763333322222 111 56999
Q ss_pred HHHHHhCCccccCCCCCC---------------cccch--HHH---------------------------HHHHhhhhHH
Q 001302 575 ELRKLCCHPYMLEGVEPD---------------IEDTN--ESF---------------------------KQLLESSGKL 610 (1104)
Q Consensus 575 ~Lrk~~~hP~l~~~~~~~---------------~~~~~--~~~---------------------------~~li~~S~Kl 610 (1104)
+|||+++||-|+...-.+ ....+ -.+ ..++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999887432111 00000 000 0123469999
Q ss_pred HHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCccccc
Q 001302 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1104)
Q Consensus 611 ~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~G 690 (1104)
..|..||++++..|+||||||||+.|||||+-+|...|++|+|+||+|....||.+|+.||.+ .+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999999999984 4678999999999999
Q ss_pred ccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 001302 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (1104)
Q Consensus 691 INL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~ 761 (1104)
|||++||+|||+|.++||.+|.||.+||||+||+|+|+|||||+++||||.|++.|++|+.|+..+.+..+
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999975543
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.5e-94 Score=839.25 Aligned_cols=479 Identities=40% Similarity=0.699 Sum_probs=423.0
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCcccHHHHHHH
Q 001302 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 274 ~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~qW~~E 351 (1104)
++.+-.++-.|+||.||..|++||..+|.++-|||||||||||||||+|+++++|..+ +.||+|||||.+++.||.-|
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEME 683 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEME 683 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHH
Confidence 3333334445899999999999999999999999999999999999999999999753 56899999999999999999
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceE
Q 001302 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1104)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~ 431 (1104)
|++|+|.+++..|+|+...|+.-++. |. ....|||+||||..+..+...|+...|.|
T Consensus 684 lKRwcPglKILTYyGs~kErkeKRqg-W~----------------------kPnaFHVCItSYklv~qd~~AFkrkrWqy 740 (1958)
T KOG0391|consen 684 LKRWCPGLKILTYYGSHKERKEKRQG-WA----------------------KPNAFHVCITSYKLVFQDLTAFKRKRWQY 740 (1958)
T ss_pred HhhhCCcceEeeecCCHHHHHHHhhc-cc----------------------CCCeeEEeehhhHHHHhHHHHHHhhccce
Confidence 99999999999999999998754431 11 23579999999999999999999999999
Q ss_pred EEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc----------h
Q 001302 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------Q 501 (1104)
Q Consensus 432 vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~----------~ 501 (1104)
+|+||||++||..|+.+++|..+++..||||||||+||++.|||+|++||+|..|.+.+.|..||.+.- .
T Consensus 741 LvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn 820 (1958)
T KOG0391|consen 741 LVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYN 820 (1958)
T ss_pred eehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999997532 2
Q ss_pred HHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhC
Q 001302 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1104)
Q Consensus 502 ~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~ 581 (1104)
...+.+||++|+||+|||+|.||+++||.|.|++|+|.||.-|+.+|+.++.+.-..-.-..|+-.+.+|++|+||||||
T Consensus 821 ~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCN 900 (1958)
T KOG0391|consen 821 HKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCN 900 (1958)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999999999999887665555567888999999999999999
Q ss_pred CccccCCCC-----------------------------C---------------Cc-------------------c----
Q 001302 582 HPYMLEGVE-----------------------------P---------------DI-------------------E---- 594 (1104)
Q Consensus 582 hP~l~~~~~-----------------------------~---------------~~-------------------~---- 594 (1104)
||-||+.-- + .. .
T Consensus 901 HPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~r 980 (1958)
T KOG0391|consen 901 HPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGR 980 (1958)
T ss_pred CCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCC
Confidence 997663100 0 00 0
Q ss_pred ----c-----------------chH-------------------------------------------------------
Q 001302 595 ----D-----------------TNE------------------------------------------------------- 598 (1104)
Q Consensus 595 ----~-----------------~~~------------------------------------------------------- 598 (1104)
. ..+
T Consensus 981 Pp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl 1060 (1958)
T KOG0391|consen 981 PPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVL 1060 (1958)
T ss_pred CCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCcccccccee
Confidence 0 000
Q ss_pred -----------------------------------------------------------------------------HHH
Q 001302 599 -----------------------------------------------------------------------------SFK 601 (1104)
Q Consensus 599 -----------------------------------------------------------------------------~~~ 601 (1104)
.+.
T Consensus 1061 ~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ 1140 (1958)
T KOG0391|consen 1061 QIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLD 1140 (1958)
T ss_pred eeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHH
Confidence 000
Q ss_pred ------------------------------------------------HHH-----------------------------
Q 001302 602 ------------------------------------------------QLL----------------------------- 604 (1104)
Q Consensus 602 ------------------------------------------------~li----------------------------- 604 (1104)
.+|
T Consensus 1141 ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r 1220 (1958)
T KOG0391|consen 1141 RIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHR 1220 (1958)
T ss_pred HHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchH
Confidence 000
Q ss_pred ------------------------------------hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCC
Q 001302 605 ------------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK 648 (1104)
Q Consensus 605 ------------------------------------~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g 648 (1104)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||+++|
T Consensus 1221 ~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg 1300 (1958)
T KOG0391|consen 1221 MRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG 1300 (1958)
T ss_pred HHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc
Confidence 03889999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 649 ~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
|.|.||||+++.++||.++.+||+ +...|||+|||++||+||||+.||||||||+||||..|.||++|||||||++.|+
T Consensus 1301 ylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVH 1379 (1958)
T KOG0391|consen 1301 YLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1379 (1958)
T ss_pred eEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceE
Confidence 999999999999999999999998 5678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHHh
Q 001302 729 IFRLITRGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRY 776 (1104)
Q Consensus 729 Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~--~~~~~~~~el~~~l~~ 776 (1104)
|||||+++||||.|+..+..|..|+.++++.. ...-+.+.++.+||..
T Consensus 1380 IYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1380 IYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred EEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcC
Confidence 99999999999999999999999999999443 3445667777776644
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=7e-93 Score=797.07 Aligned_cols=457 Identities=44% Similarity=0.755 Sum_probs=410.7
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCcccHHHHHHH
Q 001302 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 274 ~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~s~l~qW~~E 351 (1104)
.-.||..+. ++|+.||+.|+|||..++.+|.|||||||||||||+|+|+++++|.+. -.||||||+|.|+|+||.+|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 346777776 799999999999999999999999999999999999999999999875 35899999999999999999
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceE
Q 001302 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1104)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~ 431 (1104)
|.+|+|.++++-|.|+...|.+++.+ +.+.. + ......|||+||||+++..|...|++++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn-----------m----Y~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN-----------M----YRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh-----------h----hccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999998874 11110 0 1234689999999999999999999999999
Q ss_pred EEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc----------cch
Q 001302 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD----------INQ 501 (1104)
Q Consensus 432 vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~----------~~~ 501 (1104)
+|+|||+.||+..|..++.|.+|++++||||||||+||++.|||+||+|++|..|.+..+|.+||.. ...
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963 124
Q ss_pred HHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhC
Q 001302 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1104)
Q Consensus 502 ~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~ 581 (1104)
+.++.+||.+|+||||||.|++|...|..+.++.|.|.||..|+.+|+.|..+... ..+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999998665432 223469999999999
Q ss_pred CccccCCCCCCcc-------------------------cc--hH------------------------------------
Q 001302 582 HPYMLEGVEPDIE-------------------------DT--NE------------------------------------ 598 (1104)
Q Consensus 582 hP~l~~~~~~~~~-------------------------~~--~~------------------------------------ 598 (1104)
||-||+..++... .. .+
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988754432200 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 001302 599 -------------------------------------------------------------------------------- 598 (1104)
Q Consensus 599 -------------------------------------------------------------------------------- 598 (1104)
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence
Q ss_pred ---------HHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 599 ---------SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 599 ---------~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
....++..|||+..|+.||++|++.|||||+|.||+.|+|+|++||..+||.|.|+||+....+|..+|.+
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 00011335999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHH
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K 749 (1104)
|++ ++.||||+||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|+++|++|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 998 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 001302 750 MVLEHLVVGR 759 (1104)
Q Consensus 750 ~~l~~~v~g~ 759 (1104)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999843
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.3e-94 Score=850.57 Aligned_cols=622 Identities=51% Similarity=0.849 Sum_probs=542.3
Q ss_pred cccccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCC--ccccccccccccCcCC-C--C-C
Q 001302 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG-D--S-D 119 (1104)
Q Consensus 46 ~~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~--~iekil~wr~~p~~~~-~--~-~ 119 (1104)
..+.+...|.+|+++|.+++|++|+.+||..|+.||+...|.+.|.|+.|..+.+ .+++|++|+|+|.... . . .
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 3456678899999999999999999999999999999999998999999977664 7999999999988744 1 1 1
Q ss_pred cccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhhccCCC-----------------C--
Q 001302 120 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNN-----------------A-- 180 (1104)
Q Consensus 120 ~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~~~~~-----------------~-- 180 (1104)
...........++|+|||+|.||+||.|+++.++...... ...++......... .
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~ 195 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNT------LPVELQRKHDTDQKPEAEIGVTRDKGKLVPYADL 195 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhccc------chHhhhhhhhcccCccccccccccCccccccccc
Confidence 1122334456799999999999999999999998755322 22223222111100 0
Q ss_pred chh--hhccCCCccchhhhhhhc-cCCccceeeeeeeeeccccccccccC-CccccHHHHHHHHHhhhccccccccccCC
Q 001302 181 EED--FVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKS 256 (1104)
Q Consensus 181 ~e~--~~~i~~~~~~verIi~~r-~~~~~~~yLVKWkgL~Y~~~tWe~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 256 (1104)
++. ...+.|+|+.+.||+.++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|....... ...+.
T Consensus 196 ~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~---~~~k~-- 270 (696)
T KOG0383|consen 196 EERFLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP---TVSKD-- 270 (696)
T ss_pred hhhhhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc---ccccc--
Confidence 111 245789999999999999 45678999999999999999999877 7788888888887654431 11000
Q ss_pred CCcccccccCCCcccccccCCCCCCC--CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC--
Q 001302 257 SPQDVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-- 332 (1104)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-- 332 (1104)
. ..........+..+|.++. ++.|++||.+|+||++..|..+..+|||||||+|||++++.|+..+....
T Consensus 271 -----~-~~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~ 344 (696)
T KOG0383|consen 271 -----L-KSNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS 344 (696)
T ss_pred -----c-cccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCC
Confidence 0 0013455677889999986 58999999999999999999999999999999999999999999998864
Q ss_pred CCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEc
Q 001302 333 ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLT 412 (1104)
Q Consensus 333 ~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvit 412 (1104)
.+|+|+++|.+++.+|.+|+..|+|.++++.|+|+.+.|.+++++++.+.+...+.. ..+.........+|+|.++
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~ 420 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLP 420 (696)
T ss_pred CCCceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCC
Confidence 359999999999999999999999999999999999999999999998887653322 1222233445679999999
Q ss_pred cHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHH
Q 001302 413 SYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1104)
Q Consensus 413 sye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F 492 (1104)
+|+++..+...+..+.|.++|+||+||+||..|+++..+..+...++++|||||+|||+.|||++||||.|+.|++...|
T Consensus 421 s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f 500 (696)
T KOG0383|consen 421 SYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWF 500 (696)
T ss_pred chhhcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 001302 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1104)
Q Consensus 493 ~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1104)
.+.|.++..++.+..||.++.|+|+||.|.|+++.+|+|.+.+++++|++.|+++|+.++++++..+.. ++...+++|+
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~ 579 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNI 579 (696)
T ss_pred hhhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 7788899999
Q ss_pred HHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEE
Q 001302 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1104)
Q Consensus 573 ~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 652 (1104)
+|+|||+|+|||+++..++...........++.+|+|+.+|.+++++++..|||||||+||+.+||+|+++|...+ .|.
T Consensus 580 ~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~ 658 (696)
T KOG0383|consen 580 VMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYE 658 (696)
T ss_pred HHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cce
Confidence 9999999999999999777777777778899999999999999999999999999999999999999999999999 999
Q ss_pred EEecCCChHHHHHHHHHHccCCCCceEEEeecCccccc
Q 001302 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1104)
Q Consensus 653 ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~G 690 (1104)
|+||..+..+||.+|++||++++..||||+||||||+|
T Consensus 659 r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 659 RIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred eccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999999998
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.2e-91 Score=800.28 Aligned_cols=486 Identities=37% Similarity=0.632 Sum_probs=413.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC--CCceEEEeCcccHHHHHHHHH
Q 001302 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 276 ~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~--~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
..|.++. ..|+|||.+||+||..++.++.||||+||||||||||+|+||+.|.+.+ .+|.|||||.+++.||.+||.
T Consensus 197 ~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 3455554 4799999999999999999999999999999999999999999998762 469999999999999999999
Q ss_pred HHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEE
Q 001302 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (1104)
Q Consensus 354 ~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vI 433 (1104)
+|+|.++|.+|||+...-. ++.+.... .+ ..+ ........-+|+||||+.+......+..+.|+++|
T Consensus 276 ~w~p~~rv~ilh~t~s~~r----~~~~~~~~----~~---~~~--L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~I 342 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGAR----YDASHSSH----KK---DKL--LIRKVATDGGILITTYDGFRIQGDDLLGILWDYVI 342 (923)
T ss_pred HhCcceEEEEEecCCcccc----cccchhhh----hh---hhh--heeeecccCcEEEEehhhhcccCcccccccccEEE
Confidence 9999999999999876311 00000000 00 000 00112245679999999999999999999999999
Q ss_pred EcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc-------------
Q 001302 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------------- 500 (1104)
Q Consensus 434 vDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~------------- 500 (1104)
+||+|+|+|++|+++.+++.+.+.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|....
T Consensus 343 LDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv 422 (923)
T KOG0387|consen 343 LDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQV 422 (923)
T ss_pred ecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996421
Q ss_pred --hHHHHHHHHHHhhHHHHHHhHhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001302 501 --QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (1104)
Q Consensus 501 --~~~~~~~L~~~L~~~~lRR~k~dv~~-~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lr 577 (1104)
.....-.|+.++.||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++..... ...-......+.-+.-||
T Consensus 423 ~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v--~~i~ng~~~~l~Gi~iLr 500 (923)
T KOG0387|consen 423 QTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV--NKILNGKRNCLSGIDILR 500 (923)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHH--HHHHcCCccceechHHHH
Confidence 12345679999999999999999998 9999999999999999999999998865321 111112223344456699
Q ss_pred HHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh-hCCCcEEEEec
Q 001302 578 KLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKWQYERIDG 656 (1104)
Q Consensus 578 k~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~-~~g~~~~ridG 656 (1104)
++||||-|++.-....... ......+..||||.+|.++|...+.+|+|||+|||...|||||+.+|. ..||+|+|+||
T Consensus 501 kICnHPdll~~~~~~~~~~-~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDG 579 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEKQG-PDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDG 579 (923)
T ss_pred hhcCCcccccCcccccccC-CCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecC
Confidence 9999999998742111100 001255778999999999999999999999999999999999999999 79999999999
Q ss_pred CCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 657 ~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.|+...|+.+|++||++. ..+||||+|++||+|+||+.||+||||||+|||+.|.||..||+||||+|.|.||||++.+
T Consensus 580 tT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999999999855 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHHhchh
Q 001302 737 SIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSK 779 (1104)
Q Consensus 737 TvEe~i~~~~~~K~~l~~~v~-g~~~~~~~~~~el~~~l~~ga~ 779 (1104)
||||+||.++--|..|.+.++ +.....-+...++.++|.++..
T Consensus 659 TIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 659 TIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 999999999999999999888 4455667888899999988754
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.2e-84 Score=767.36 Aligned_cols=465 Identities=38% Similarity=0.625 Sum_probs=404.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--------CCCceEEEeCcccHHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--------~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
.+||.||.+|||||.+....+-+|||||+||||||+|+|++++.=... ..-|.|||||.++..+|+.|+.++
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998753321 234899999999999999999999
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001302 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1104)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvD 435 (1104)
+|.++|+.|.|....|..+|.. -.+.+|+||||+.++.|...|..+.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877753 23578999999999999999999999999999
Q ss_pred CcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc---------------
Q 001302 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------------- 500 (1104)
Q Consensus 436 EaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~--------------- 500 (1104)
|+|-+||..++++++++.+.++|||+|||||+|||+.|||+|++||+|+.+++...|.++|....
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996321
Q ss_pred hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh-------cCC-chhHHHHH
Q 001302 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1104)
Q Consensus 501 ~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~-------~~~-~~~~l~~~ 572 (1104)
..-.++.||+.+=|||+||+|+||+++||||..+..+|+|+|.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 2246788999999999999999999999999999999999999999999998873222111 111 24567788
Q ss_pred HHHHHHHhCCccccCCC-CCCcccchHH----HH--HHHhhhhHHHHHHHHHHHHH--------------HhCCeEEEEe
Q 001302 573 VMELRKLCCHPYMLEGV-EPDIEDTNES----FK--QLLESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1104)
Q Consensus 573 ~~~Lrk~~~hP~l~~~~-~~~~~~~~~~----~~--~li~~S~Kl~~L~~lL~~l~--------------~~g~kvLIFs 631 (1104)
+..|||.||||.|.-.. .++....... .. +-+..|+|+.+|..+|...- -.|||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999987543 2222111111 11 22678999999999998652 1479999999
Q ss_pred cchhHHHHHHHHHhhC---CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCCh
Q 001302 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1104)
Q Consensus 632 q~~~~ldiL~~~L~~~---g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp 708 (1104)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||.+++-.+ +|++|.+||+|+|||+|||||+++.||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDv-LlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDV-LLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeE-EEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988543 5678899999999999999999999877654 99999999999999999999999999999
Q ss_pred hhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccc--cCCCHHHHHHHHH
Q 001302 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 775 (1104)
Q Consensus 709 ~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~~--~~~~~~el~~~l~ 775 (1104)
.+|+|||+|||||||++.|+||||||+||+||+|+-.++-||..++.|++..++ ..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976543 4566777777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-72 Score=669.93 Aligned_cols=453 Identities=35% Similarity=0.546 Sum_probs=380.4
Q ss_pred CCCcHHHHHHHHHHHHhhc------CCCcEEEEcCCCchHHHHHHHHHHHHhcCCC------CceEEEeCcccHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~------~~~~~ILademGlGKTiqai~~l~~l~~~~~------~p~LIV~P~s~l~qW~~E 351 (1104)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||..++...+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999976553 4578999999999999999999999987532 478999999999999999
Q ss_pred HHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001302 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1104)
Q Consensus 352 ~~~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w 429 (1104)
|.+|.- .++...++|...+ ..+....+..-. ......-|++.||+++......+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999984 5777777777665 111111110000 0123456999999999988888889999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc---------
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~--------- 500 (1104)
++||+||+|++||..|.++++|..+.+.+|++|||||+|||+.|+|++|+|.+|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885322
Q ss_pred -----hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001302 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1104)
Q Consensus 501 -----~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~ 575 (1104)
.++.+..|..+...|++||+-....+.||++.+++|.|.+|+.|+.+|+.++....... ..+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~--~~~---~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRT--LKG---YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhh--hhc---chhhHHHH
Confidence 13458889999999999999989999999999999999999999999999987641111 111 15566778
Q ss_pred HHHHhCCccccCCCCCCcc-----cchHHH--------HHHHhhhhHHHHHHHHHHHHHHh-CCeEEEEecchhHHHHHH
Q 001302 576 LRKLCCHPYMLEGVEPDIE-----DTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (1104)
Q Consensus 576 Lrk~~~hP~l~~~~~~~~~-----~~~~~~--------~~li~~S~Kl~~L~~lL~~l~~~-g~kvLIFsq~~~~ldiL~ 641 (1104)
|+++|+||.|+...+.... ...... ..-...|+|+..|..|+....+. -.++.+.|+++.++|+++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 9999999999852111100 000000 01122489999999999665544 346666677889999999
Q ss_pred HHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh
Q 001302 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi 721 (1104)
..+..+|+.++++||+++..+|+.+|+.||.+.+..||||+|++|||+||||.+|++||+||++|||+++.|||+||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccc
Q 001302 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1104)
Q Consensus 722 GQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~ 760 (1104)
||+++|+||||++.||+||+||+++..|..|-..|++..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998653
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.8e-69 Score=621.09 Aligned_cols=470 Identities=33% Similarity=0.519 Sum_probs=384.0
Q ss_pred CCCcHHHHHHHHHHHHhh---------cCCCcEEEEcCCCchHHHHHHHHHHHHhcC---CCCceEEEeCcccHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~---------~~~~~~ILademGlGKTiqai~~l~~l~~~---~~~p~LIV~P~s~l~qW~~E 351 (1104)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|+..++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 479999999999995332 468899999999999999999999988653 45699999999999999999
Q ss_pred HHHHcCCCe------EEEEecCh--hHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--
Q 001302 352 FATWAPQMN------VVMYVGTS--QARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-- 420 (1104)
Q Consensus 352 ~~~~~p~~~------vv~~~g~~--~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~-- 420 (1104)
|.+|.+++. |..+...+ ..|. .+.. | ...-.|+|..|++++..
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~--W------------------------~~~ggVmIiGYdmyRnLa~ 800 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR--W------------------------QEDGGVMIIGYDMYRNLAQ 800 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHH--H------------------------HhcCCEEEEehHHHHHHhc
Confidence 999998632 22221111 1121 1111 0 01225999999998642
Q ss_pred -------------cccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCC
Q 001302 421 -------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1104)
Q Consensus 421 -------------~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~ 487 (1104)
...|..-..++||+||||-|||..|.+++++..+.+++||+|||||||||+.|++.+++|+.|+.++
T Consensus 801 gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLG 880 (1567)
T KOG1015|consen 801 GRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLG 880 (1567)
T ss_pred ccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccccccc
Confidence 1123334578999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccchH---------------HHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHH
Q 001302 488 SLEEFQEEFKDINQE---------------EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAIL 552 (1104)
Q Consensus 488 ~~~~F~~~f~~~~~~---------------~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il 552 (1104)
+..+|.++|.+..+. ....-|+.+|+.++-|+-...+.+.|||+.+++|.|.||+.|..+|..++
T Consensus 881 s~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 881 SIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred CcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHH
Confidence 999999999754321 22345899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH---hcCCchhHHHHHHHHHHHHhCCccccCC------------------CC-CCc-----------------
Q 001302 553 TRNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEG------------------VE-PDI----------------- 593 (1104)
Q Consensus 553 ~~~~~~l~---~~~~~~~~l~~~~~~Lrk~~~hP~l~~~------------------~~-~~~----------------- 593 (1104)
+.....-+ .+.+....++.-+..|+++.+||+.+.- .. ...
T Consensus 961 ~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~k 1040 (1567)
T KOG1015|consen 961 DHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKK 1040 (1567)
T ss_pred hhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccc
Confidence 83222111 1223456788888899999999986410 00 000
Q ss_pred --------------------------------------------c-------------------cchHHHHHH-------
Q 001302 594 --------------------------------------------E-------------------DTNESFKQL------- 603 (1104)
Q Consensus 594 --------------------------------------------~-------------------~~~~~~~~l------- 603 (1104)
. ++.+.+..+
T Consensus 1041 s~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~ 1120 (1567)
T KOG1015|consen 1041 SGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAE 1120 (1567)
T ss_pred ccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhh
Confidence 0 000011111
Q ss_pred -HhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh----------------------CCCcEEEEecCCCh
Q 001302 604 -LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGG 660 (1104)
Q Consensus 604 -i~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----------------------~g~~~~ridG~~~~ 660 (1104)
+..||||.+|.+||....+-|.|+|||||....||+|++||.. +|..|.||||+++.
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 3359999999999999999999999999999999999999963 46789999999999
Q ss_pred HHHHHHHHHHccCCCCc-eEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 661 AERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~-~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
.+|++..++||.+.+-+ .+||||||||++||||.+|++|||||-.|||..+.|+|-|++|+||+|+|+||||++.||+|
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHH
Confidence 99999999999987644 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHhchh
Q 001302 740 ERMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (1104)
Q Consensus 740 e~i~~~~~~K~~l~~~v~g~~~-~~~~~~~el~~~l~~ga~ 779 (1104)
++||.++-.|..+...|+++.. ...++.+||..|..|...
T Consensus 1281 eKIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1281 EKIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 9999999999999999997653 346888999999887654
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-66 Score=564.06 Aligned_cols=470 Identities=30% Similarity=0.496 Sum_probs=378.7
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHH
Q 001302 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 273 ~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~-~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E 351 (1104)
+-.+||.-+. ..|-|||++|+.|+...-. .-.|||||||||+|||+|+|+++.. .-...|+|||||.-.+.||.+|
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHH
Confidence 3456676655 5799999999999965544 5788999999999999999998876 3334599999999999999999
Q ss_pred HHHHcC-CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------
Q 001302 352 FATWAP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------- 420 (1104)
Q Consensus 352 ~~~~~p-~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~---------- 420 (1104)
|.+++. .+++.+|||.+...++ .....||||+|||..+...
T Consensus 250 I~~~T~gslkv~~YhG~~R~~ni----------------------------kel~~YDvVLTty~vvEs~yRk~~~Gfrr 301 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNI----------------------------KELMNYDVVLTTYAVVESVYRKQDYGFRR 301 (791)
T ss_pred HHHhccCceEEEEEecccccCCH----------------------------HHhhcCcEEEEecHHHHHHHHhccccccc
Confidence 999984 5789999998654332 1236899999999998432
Q ss_pred -------cccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH---
Q 001302 421 -------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE--- 490 (1104)
Q Consensus 421 -------~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~--- 490 (1104)
.+.|.+++|..||+||||.+|+..|...+++..+.+.+||.|||||+||.+.|||+|++||..++|.-+-
T Consensus 302 Kngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~ 381 (791)
T KOG1002|consen 302 KNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTK 381 (791)
T ss_pred cCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhh
Confidence 3457889999999999999999999999999999999999999999999999999999999988864220
Q ss_pred ------H--H-------------------HHHH--------h-ccchHHHHHHHHHHhhHHHHHHhHhhHhh--cCCCcE
Q 001302 491 ------E--F-------------------QEEF--------K-DINQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKK 532 (1104)
Q Consensus 491 ------~--F-------------------~~~f--------~-~~~~~~~~~~L~~~L~~~~lRR~k~dv~~--~lP~k~ 532 (1104)
+ | ...| + .-.....+...|.+|+.+|+||+|-.-.. .|||..
T Consensus 382 cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRi 461 (791)
T KOG1002|consen 382 CDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRI 461 (791)
T ss_pred ccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccc
Confidence 0 1 0000 0 00123456688999999999999965433 589998
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHhCCccccCCCC----------------
Q 001302 533 ELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE---------------- 590 (1104)
Q Consensus 533 e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~~~~Lrk~~~hP~l~~~~~---------------- 590 (1104)
..+-.--++..+..+|+.+.......++.- -.+..+++.++.+|||+..||+|.-...
T Consensus 462 v~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~l 541 (791)
T KOG1002|consen 462 VTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGL 541 (791)
T ss_pred eeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecc
Confidence 888888899999999999877654443321 1244567888999999999999862210
Q ss_pred ------CCcccc---------------------------------------------hHHHH----------HHHhhhhH
Q 001302 591 ------PDIEDT---------------------------------------------NESFK----------QLLESSGK 609 (1104)
Q Consensus 591 ------~~~~~~---------------------------------------------~~~~~----------~li~~S~K 609 (1104)
+.+... ...++ .-+++|.|
T Consensus 542 c~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTK 621 (791)
T KOG1002|consen 542 CHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTK 621 (791)
T ss_pred cCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhH
Confidence 000000 00000 01346899
Q ss_pred HHHHHHHHHHHHHhC--CeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 610 LQLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 610 l~~L~~lL~~l~~~g--~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
+.+|.+-|..+.++. -|.||||||+.|||+|.=.|...|++.+.+.|+|+...|..+|+.|.++... .|||+|.+||
T Consensus 622 IEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkAG 700 (791)
T KOG1002|consen 622 IEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEeccC
Confidence 999999998887765 4899999999999999999999999999999999999999999999876554 4699999999
Q ss_pred cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc--ccCC
Q 001302 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNI 765 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~--~~~~ 765 (1104)
|+.+||+.|++|+++||+|||+...||++|+|||||.++|.|.||+.++|||++|++.+++|..+.++-+|... -..+
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kL 780 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKL 780 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987642 1345
Q ss_pred CHHHHHHHH
Q 001302 766 NQEELDDII 774 (1104)
Q Consensus 766 ~~~el~~~l 774 (1104)
+.++|.-|+
T Consensus 781 t~eDmqfLF 789 (791)
T KOG1002|consen 781 TEEDMQFLF 789 (791)
T ss_pred CHHHHHHHh
Confidence 666665543
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.7e-66 Score=582.72 Aligned_cols=473 Identities=29% Similarity=0.510 Sum_probs=388.9
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhh-cCCCcEEEEcCCCchHHHHHHHHHHHHhc-----CC----CCceEEEeCc
Q 001302 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFG-----ER----ISPHLVVAPL 342 (1104)
Q Consensus 273 ~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~-~~~~~~ILademGlGKTiqai~~l~~l~~-----~~----~~p~LIV~P~ 342 (1104)
.+.+.|.... ..|.|||..|+.||.-.- ..+.||||||+||||||+++|+++.+-.. .+ ..++|||||.
T Consensus 314 ~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 314 DLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred cccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 3445555544 689999999999995443 34778999999999999999999987642 11 1279999999
Q ss_pred ccHHHHHHHHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh-
Q 001302 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL- 419 (1104)
Q Consensus 343 s~l~qW~~E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~- 419 (1104)
|++.||..|+++-. -.+.|.+|||+.. |.+ . .....+||||||||..+..
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~-------------------------~~~L~~YDvViTTY~lva~~ 445 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-S-------------------------AKELRKYDVVITTYNLVANK 445 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-C-------------------------HHHHhhcceEEEeeeccccC
Confidence 99999999998765 2478999999875 221 0 1123689999999999866
Q ss_pred ---------ccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH
Q 001302 420 ---------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1104)
Q Consensus 420 ---------~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~ 490 (1104)
....|..+.|..||+||||.+||.+++.+.++..+.+..||+|||||+|||+-|+|+|+.||+...|++..
T Consensus 446 ~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~ 525 (901)
T KOG4439|consen 446 PDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLK 525 (901)
T ss_pred CchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHH
Confidence 24568889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhh-----cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh----
Q 001302 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR---- 561 (1104)
Q Consensus 491 ~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~-----~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---- 561 (1104)
.+.++.... ......++.=+.++.||||+|...-. .||++...++.++|+..+...|.-+++....++..
T Consensus 526 ~Wke~i~~~-s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~ 604 (901)
T KOG4439|consen 526 QWKENIDNM-SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ 604 (901)
T ss_pred HHHHhccCc-cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 888876532 22345667777899999999988765 79999999999999999999999887765544421
Q ss_pred ------cCC----------------------------c----hhHHHHHHHHHHHHhCCccccCCCCCCcc---------
Q 001302 562 ------RGG----------------------------A----QISLINVVMELRKLCCHPYMLEGVEPDIE--------- 594 (1104)
Q Consensus 562 ------~~~----------------------------~----~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~--------- 594 (1104)
.++ . ...++..+++|||+|+||-+.....+...
T Consensus 605 ~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~s 684 (901)
T KOG4439|consen 605 REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDS 684 (901)
T ss_pred hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchh
Confidence 000 0 01246778999999999976643321100
Q ss_pred -------------------------------cchHHHHHHHhhhhHHHHHHHHHHHH-HHhCCeEEEEecchhHHHHHHH
Q 001302 595 -------------------------------DTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLED 642 (1104)
Q Consensus 595 -------------------------------~~~~~~~~li~~S~Kl~~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~ 642 (1104)
.....+-.....|.|+..+..++..+ .....|++|.||++.+|+++..
T Consensus 685 de~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~ 764 (901)
T KOG4439|consen 685 DEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRK 764 (901)
T ss_pred hhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHH
Confidence 00011122234688999988888877 6678899999999999999999
Q ss_pred HHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhC
Q 001302 643 YLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1104)
Q Consensus 643 ~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiG 722 (1104)
.|...|+.|..++|.+...+|+.+++.||....+..|+|||..|||+||||..|+++|++|..|||+...||.+|++|+|
T Consensus 765 hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 765 HIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred HHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc---ccCCCHHHHHHHH
Q 001302 723 QTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDII 774 (1104)
Q Consensus 723 Q~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~---~~~~~~~el~~~l 774 (1104)
|+|.|.||||+++||||++|...+.+|+.|+..|+.+.. ...++..+|..||
T Consensus 845 QkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 845 QKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred ccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 999999999999999999999999999999999985332 2345666666554
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-64 Score=653.81 Aligned_cols=474 Identities=43% Similarity=0.720 Sum_probs=411.0
Q ss_pred CCCCCCcHHHHHHHHHHH-HhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC---CCceEEEeCcccHHHHHHHHHHHc
Q 001302 281 LSGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 281 ~~~~~L~~yQ~~gv~wl~-~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
....+|+|||++|++|+. ..+..+.+|||||+||+|||+|+|+++.++.... .+|+|||||.+++.||.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334789999999999999 8889999999999999999999999998865432 369999999999999999999999
Q ss_pred CCCe-EEEEecChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh---ccccccCCc
Q 001302 357 PQMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1104)
Q Consensus 357 p~~~-vv~~~g~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~---~~~~l~~~~ 428 (1104)
|.++ +.+++|.... +..+.+..... . ...|++++|||+.+.. +...+..+.
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~v~itty~~l~~~~~~~~~l~~~~ 472 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLH-------------------L--VIIFDVVITTYELLRRFLVDHGGLKKIE 472 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhc-------------------c--cceeeEEechHHHHHHhhhhHHHHhhce
Confidence 9999 9999998863 44443321000 0 2358999999999999 999999999
Q ss_pred ceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhccc------
Q 001302 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------ 500 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~-fL~p~~~~-~~~~F~~~f~~~~------ 500 (1104)
|+++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 473 ~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 473 WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred eeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999 99999999 5588988886432
Q ss_pred -----hHHHHHHHHHHhhHHHHHHhHhh--HhhcCCCcEEEEEeccCCHHHHHHHHHHHH---HHHHHHHhc--CC----
Q 001302 501 -----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG---- 564 (1104)
Q Consensus 501 -----~~~~~~~L~~~L~~~~lRR~k~d--v~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~---~~~~~l~~~--~~---- 564 (1104)
....+..|+.+++||++||+|.+ +...||++.+.++.|.|++.|+.+|...+. ++...+... ..
T Consensus 553 ~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (866)
T COG0553 553 GPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDEN 632 (866)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12345558899999999999999 899999999999999999999999999998 666555432 11
Q ss_pred ----chhHHHHHHHHHHHHhCCccccCCC-CCCcc----------cchHHHHHHHhhh-hHHHHHHHHH-HHHHHhCC--
Q 001302 565 ----AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH-- 625 (1104)
Q Consensus 565 ----~~~~l~~~~~~Lrk~~~hP~l~~~~-~~~~~----------~~~~~~~~li~~S-~Kl~~L~~lL-~~l~~~g~-- 625 (1104)
....+++.++.||++|+||.++... +.... ........++..| +|+..+.++| ..+...|+
T Consensus 633 ~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~ 712 (866)
T COG0553 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYH 712 (866)
T ss_pred cccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccc
Confidence 2667889999999999999999765 22211 1111223467788 9999999999 89999999
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCC
Q 001302 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD 705 (1104)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~ 705 (1104)
||||||||+.++++|+++|...++.|+++||+++...|+.+|++||++ ...+||++|++|||.||||++|++||+||++
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~ 791 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccc
Confidence 999999999999999999999999999999999999999999999997 5567899999999999999999999999999
Q ss_pred CChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHHh
Q 001302 706 WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIRY 776 (1104)
Q Consensus 706 wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~-~--~~~~~~~~el~~~l~~ 776 (1104)
|||+.+.||++|+|||||+++|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++..
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999874 2 2234666666666543
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.2e-58 Score=520.48 Aligned_cols=470 Identities=32% Similarity=0.514 Sum_probs=376.2
Q ss_pred CCCcHHHHHHHHHHH---------HhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~---------~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
..+.|||+-|+.||. +.-..|.|||||+.||||||+|+|+|+..++... .+.+|+|+|-.|+.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 469999999999984 3335688999999999999999999999887764 469999999999999999999
Q ss_pred HHcCCC-----------eEEEEecChh---HHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh
Q 001302 354 TWAPQM-----------NVVMYVGTSQ---ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1104)
Q Consensus 354 ~~~p~~-----------~vv~~~g~~~---~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~ 419 (1104)
.|.|.+ .|.++....+ .|..+.. .+ ...--|+++.|++++-
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~----------------------~W---v~~GGVlLvGYemfRL 387 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIE----------------------QW---VQTGGVLLVGYEMFRL 387 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHH----------------------HH---hccCCEEEehHHHHHH
Confidence 999862 2222221111 1211110 00 0122477777777642
Q ss_pred c--------------------------------------cccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEE
Q 001302 420 D--------------------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVL 461 (1104)
Q Consensus 420 ~--------------------------------------~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rll 461 (1104)
- ...|-.-..++||+||+|||||..+.++.+|+.+++++|+.
T Consensus 388 L~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiV 467 (1387)
T KOG1016|consen 388 LILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIV 467 (1387)
T ss_pred HHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEE
Confidence 1 11122234689999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccch---------------HHHHHHHHHHhhHHHHHHhHhhHhh
Q 001302 462 LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMK 526 (1104)
Q Consensus 462 LTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~---------------~~~~~~L~~~L~~~~lRR~k~dv~~ 526 (1104)
|||-|+|||+.|+|.++.|++|+.+++..+|.+.|..... ......||.+|..|+.||+...+..
T Consensus 468 LTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~ 547 (1387)
T KOG1016|consen 468 LTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK 547 (1387)
T ss_pred EeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh
Confidence 9999999999999999999999999999999999964221 1234569999999999999999999
Q ss_pred cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC------------------
Q 001302 527 ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG------------------ 588 (1104)
Q Consensus 527 ~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~------------------ 588 (1104)
.||.+.|+++.|.||..|+++|+.++..........+....+.+....-..|+.|||-++-.
T Consensus 548 ~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~ 627 (1387)
T KOG1016|consen 548 ILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEM 627 (1387)
T ss_pred hcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999999988655544433333322334444445566688853300
Q ss_pred ----------------CCCC--------------------------------cccchHH--------HHHHHhhhhHHHH
Q 001302 589 ----------------VEPD--------------------------------IEDTNES--------FKQLLESSGKLQL 612 (1104)
Q Consensus 589 ----------------~~~~--------------------------------~~~~~~~--------~~~li~~S~Kl~~ 612 (1104)
..+. +....+. ...++..++|+.+
T Consensus 628 ~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~ 707 (1387)
T KOG1016|consen 628 KFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVI 707 (1387)
T ss_pred hhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEE
Confidence 0000 0000000 1123556788888
Q ss_pred HHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC------------------CCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 613 L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
+.+++..-..-|.|+|||||....||.|+++|..+ +.+|.|+||.++..+|+++|++||.+.
T Consensus 708 ~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~ 787 (1387)
T KOG1016|consen 708 SLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP 787 (1387)
T ss_pred EEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC
Confidence 88888888888999999999999999999999753 346899999999999999999999998
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHH
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~ 754 (1104)
+-...||||||||..||||-+|+.+||||..|||..+.||..|++|.||+|++.|||||+.+|+|.+||.|+-.|.++.+
T Consensus 788 ~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsd 867 (1387)
T KOG1016|consen 788 GLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSD 867 (1387)
T ss_pred CceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc-ccCCCHHHHHHHHHhch
Q 001302 755 LVVGRLK-AQNINQEELDDIIRYGS 778 (1104)
Q Consensus 755 ~v~g~~~-~~~~~~~el~~~l~~ga 778 (1104)
.|++... ..+++..|++.|+.+..
T Consensus 868 RvVDd~np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 868 RVVDDANPDANISQKELENLLMYDE 892 (1387)
T ss_pred hhhcccCccccccHHHHHHHhhhhh
Confidence 9998775 35799999999998764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-56 Score=487.09 Aligned_cols=409 Identities=28% Similarity=0.429 Sum_probs=326.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeE-EE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV-VM 363 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~v-v~ 363 (1104)
.|.|||++||++. ...|++++||||||||||+|||+++.+.+.++ |.|||||.++...|..++.+|+|...- .+
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 6999999999875 46799999999999999999999999998875 999999999999999999999987544 22
Q ss_pred EecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCc
Q 001302 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (1104)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~ 443 (1104)
..+..+.- + ......-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~~----------~-------------------~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDPL----------P-------------------DVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCCc----------c-------------------ccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 22222110 0 011234589999999999999999999999999999999999
Q ss_pred ccHHHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc---------hHHHHHHHHHHh
Q 001302 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (1104)
Q Consensus 444 ~s~~~~~l~~l--~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~---------~~~~~~~L~~~L 512 (1104)
.++..+++..+ ...|.+||||||--..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99998888776 3789999999999999999999999999999999999999997543 234677888877
Q ss_pred h-HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 513 ~-~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
. ..|+||+|.+|+++||||...++ +.....+-..-++++..... +... + .|+-.+.|- .
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a~~------~t~~---~-~~e~~~~~l----~----- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAAAD------YTKV---N-SMERKHESL----L----- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHhhh------cchh---h-hhhhhhHHH----H-----
Confidence 4 56999999999999999955544 44444444444444332221 0000 0 001011000 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHH----HHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHH
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~----l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i 667 (1104)
. .--...-.|+..+.+.|-. ..+.+.|+|||+.+..+||-|+.++..+++.+.||||+|++.+|+.+.
T Consensus 464 ------l--~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 ------L--FYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred ------H--HHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 0 0001123455555555544 445678999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 668 ~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
+.|+....- .|-+||..|+|.||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+|+.++....
T Consensus 536 qsFQ~seev-~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSEEV-RVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhccccce-EEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 999875544 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 001302 748 KKMVLEHLV 756 (1104)
Q Consensus 748 ~K~~l~~~v 756 (1104)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998754443
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.1e-53 Score=530.69 Aligned_cols=417 Identities=20% Similarity=0.279 Sum_probs=321.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv 362 (1104)
..|.|||+..+..+... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 56999999998776443 467899999999999999999999887654 469999999999999999998887 66777
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccccCCcceEEEEcCccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~---~~l~~~~w~~vIvDEaHr 439 (1104)
++.+...... . .. .......++++|+||+.+..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765542210 0 00 0011235789999999998754 446677999999999999
Q ss_pred ccC---cccHHHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc--------------
Q 001302 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------------- 500 (1104)
Q Consensus 440 lkn---~~s~~~~~l~~l--~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~-------------- 500 (1104)
+++ ..|..++.+..+ .++++|+|||||+||+..|+|++|+||+|+.|+++..|.+......
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888877 4679999999999999999999999999999999999986442100
Q ss_pred -hHHHHHHHHHHh---------------------------h---------HHHHHHhHhhHhhcCCCcEEEEEeccCCHH
Q 001302 501 -QEEQISRLHRML---------------------------A---------PHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1104)
Q Consensus 501 -~~~~~~~L~~~L---------------------------~---------~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~ 543 (1104)
.......|..+| + +.|+|+++++|. .+|++..+.+.++|++.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 111112221111 1 457788888876 68999999999999764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcc-ccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001302 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1104)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~-l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~ 622 (1104)
|........ ...++++ .+|. ++.... ........++|+..|.++|+.+
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~-- 491 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSH-- 491 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhc--
Confidence 332221100 0111221 1221 000000 0011234568999999988865
Q ss_pred hCCeEEEEecchhHHHHHHHHH-hhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
.+.|+||||++..+++.|.+.| ...|+++..++|+++..+|+++++.|+.++.+. .+||+|.+||+|+||+.|++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~-~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA-QVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-cEEEechhhccCCCcccccEEEE
Confidence 3789999999999999999999 567999999999999999999999998754332 37899999999999999999999
Q ss_pred ECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccc
Q 001302 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1104)
Q Consensus 702 ~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~ 760 (1104)
||+||||..++||+||+||+||++.|.||.+++++|+++.|++...+|+.+...+++..
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999999999999999999998877776543
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=9.8e-49 Score=470.21 Aligned_cols=437 Identities=30% Similarity=0.500 Sum_probs=356.4
Q ss_pred HHHHHHHHHHHH-hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC--------CCceEEEeCcccHHHHHHHHHHHcC-
Q 001302 288 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAPLSTLRNWEREFATWAP- 357 (1104)
Q Consensus 288 ~yQ~~gv~wl~~-~~~~~~~~ILademGlGKTiqai~~l~~l~~~~--------~~p~LIV~P~s~l~qW~~E~~~~~p- 357 (1104)
.+|..+-.|+.. .+..-.|||+||+||+|||+++|+++....... .+..|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666555532 344567899999999999999999887664332 2478999999999999999966663
Q ss_pred -CCeEEEEec-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001302 358 -QMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1104)
Q Consensus 358 -~~~vv~~~g-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvD 435 (1104)
.+.+.+|+| .++. ....+++||||||.++.. ..+..+.|-.||+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 477888888 2211 123578899999999975 66777999999999
Q ss_pred CcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc---h-HHHHHHHHHH
Q 001302 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (1104)
Q Consensus 436 EaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~---~-~~~~~~L~~~ 511 (1104)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+.... . ......++..
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887765432 2 4667889999
Q ss_pred hhHHHHHHhHhhH-----hhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHh
Q 001302 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1104)
Q Consensus 512 L~~~~lRR~k~dv-----~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~~~~Lrk~~ 580 (1104)
|.++++||+|..- .-.|||+....+.+.++..++.+|+.+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999733 23789999999999999999999999887665444321 223455667778899999
Q ss_pred CCccccCCCCCCcc----cch-----------------------------------H---------------------HH
Q 001302 581 CHPYMLEGVEPDIE----DTN-----------------------------------E---------------------SF 600 (1104)
Q Consensus 581 ~hP~l~~~~~~~~~----~~~-----------------------------------~---------------------~~ 600 (1104)
+||.+.-....... ... + ..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987631100000 000 0 00
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHHhCC-eEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHH
Q 001302 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1104)
Q Consensus 601 ~~li~-------------~S~Kl~~L~~lL~~l~~~g~-kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~ 666 (1104)
..++. .|.|+..+.++|........ +++||||++.++++++..|...|+.+.+++|.++...|...
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11111 26778888888875544444 99999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHH
Q 001302 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1104)
Q Consensus 667 i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~ 746 (1104)
+..|+. +...-+.|+|.+|||.|+||+.|++|+++||+|||....||+.||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4444568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 001302 747 KKKMVLEHLVVG 758 (1104)
Q Consensus 747 ~~K~~l~~~v~g 758 (1104)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999988776654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2e-41 Score=383.07 Aligned_cols=272 Identities=42% Similarity=0.705 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHhh---------cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCC----CceEEEeCcccHHHHHHHHHHH
Q 001302 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 289 yQ~~gv~wl~~~~---------~~~~~~ILademGlGKTiqai~~l~~l~~~~~----~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
||++||+||...+ ...+|||||||||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78899999999999999999999998876533 2699999999999999999999
Q ss_pred c-C-CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHh-----hccccccCCc
Q 001302 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1104)
Q Consensus 356 ~-p-~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~-----~~~~~l~~~~ 428 (1104)
+ | .+++++|.|....+.. .......++|+|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6889999888722211 0112357899999999999 6677788899
Q ss_pred ceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHh---ccchHHHH
Q 001302 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK---DINQEEQI 505 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~---~~~~~~~~ 505 (1104)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|.+.|. ........
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999884 34556788
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHhC
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~----~~~~~l~~~~~~Lrk~~~ 581 (1104)
..|..+++++++||++.++...+|+..+.++.|+||+.|+..|+.+.......+.... .....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999889999999999999999999999998887766544333 334578899999999999
Q ss_pred Ccccc
Q 001302 582 HPYML 586 (1104)
Q Consensus 582 hP~l~ 586 (1104)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-38 Score=382.81 Aligned_cols=340 Identities=16% Similarity=0.259 Sum_probs=254.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC--CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHc--C
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--P 357 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~--~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~--p 357 (1104)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+ .+++|||||.+. +.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4689999999998773 333 589999999999999999988765 258999999765 789999999997 3
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------cccccCC
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----------~~~l~~~ 427 (1104)
...+..|+|....+ .....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~-------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKER-------------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCcccc-------------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 45666777653221 012367999999998643 1235556
Q ss_pred cceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhccchHHHHH
Q 001302 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL-~p~~~~~~~~F~~~f~~~~~~~~~~ 506 (1104)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+.++ .|..+.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------
Confidence 899999999999964 344556777889999999999998762 23333332 333321
Q ss_pred HHHHHhhHHHHHHhHhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcc
Q 001302 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1104)
Q Consensus 507 ~L~~~L~~~~lRR~k~dv~--~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~ 584 (1104)
....+.. ..|.+.....|.|+|++.....|.. .. .. .+..
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~-------~~-----------~k~~----- 473 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR---EN-------SR-----------KRML----- 473 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHH---hc-------ch-----------hhhH-----
Confidence 1111111 3567778889999999875444421 10 00 0000
Q ss_pred ccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHH
Q 001302 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1104)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~ 664 (1104)
....+..|+..+..++......|+|+||||+++..++.+...|. . ..|+|+++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHH
Confidence 00124568999999998776789999999999998888888773 3 4589999999999
Q ss_pred HHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC-ChhhHHHHHHhhHhhCCCCe-----EEEEEEeeCCCH
Q 001302 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1104)
Q Consensus 665 ~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w-Np~~~~Qa~gR~hRiGQ~k~-----V~Vyrlvt~~Tv 738 (1104)
+++++|+.++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.||+++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998543 334688889999999999999999999986 99999999999999987653 789999999999
Q ss_pred HHHHHHH
Q 001302 739 EERMMQM 745 (1104)
Q Consensus 739 Ee~i~~~ 745 (1104)
|+..-.+
T Consensus 610 E~~~s~~ 616 (732)
T TIGR00603 610 EMYYSTK 616 (732)
T ss_pred HHHHHHH
Confidence 9887543
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-33 Score=358.95 Aligned_cols=430 Identities=17% Similarity=0.211 Sum_probs=283.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC--CCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~ 360 (1104)
.++|+||.+.+..+. . +++|++++||+|||++++.++..++....+++|||||. .++.||..++.+++. ...
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887775555799999997 677899999998863 247
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEaH 438 (1104)
+++++|......... + ....+|+++|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654332111 1 124679999999987653 23344478999999999
Q ss_pred cccCcccHHHHHHHhc---ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH----HHHHHHh-------ccchHHH
Q 001302 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE----EFQEEFK-------DINQEEQ 504 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l---~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~----~F~~~f~-------~~~~~~~ 504 (1104)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+. +....+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987665544332222 244589999999765 56677777766533322111 1111111 1222355
Q ss_pred HHHHHHHhhHHHHHHhHhhHhhc-CCCcEEEEEeccCCHHHHHHHHHHHHHHHH---HH------Hh--------cCCch
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQ---IL------TR--------RGGAQ 566 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~~-lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~---~l------~~--------~~~~~ 566 (1104)
+..++..|..++.++.+...... .++....+....+...++.++..+...... .+ .. .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888888777654322 222221122222333333333222110000 00 00 00011
Q ss_pred hHHHHHHHHHHHHhCCccccCCCCCCcccch------HHHHHHHhhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHH
Q 001302 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDTN------ESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (1104)
Q Consensus 567 ~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~------~~~~~li~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ld 638 (1104)
..+...+..++....++...... ....... .....+...++|+..|.++|.... ..+.|+||||++..+++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKAS-KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHH-HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 11222222222221111000000 0000000 011222345789999999998876 46889999999999999
Q ss_pred HHHHHHhhCCCcEEEEecC--------CChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhh
Q 001302 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1104)
Q Consensus 639 iL~~~L~~~g~~~~ridG~--------~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~ 710 (1104)
.|.++|...|+++.+++|. ++..+|+.++++|+.+. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 78889999999998754 347999999999999999999999999999999
Q ss_pred HHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 001302 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1104)
Q Consensus 711 ~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~ 753 (1104)
++|+.||++|.|+ +.||.|++++|+||.++....+|....
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9998888888765 778999999999999988776555443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.98 E-value=1.4e-31 Score=322.80 Aligned_cols=256 Identities=25% Similarity=0.455 Sum_probs=198.0
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHh------------cC-----CCCceEEEeCcccHHHHHHHHHHHcCCC-eEEE
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GE-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~------------~~-----~~~p~LIV~P~s~l~qW~~E~~~~~p~~-~vv~ 363 (1104)
..|..+++||+||+|||...++....-. .. ..|.+|||||.+++.||-.||.++++.. .|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 4466789999999999998877654322 11 1358999999999999999999999776 9999
Q ss_pred EecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc----------------------
Q 001302 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---------------------- 421 (1104)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~---------------------- 421 (1104)
|-|-...--. .......+|||+|||+.+..+.
T Consensus 452 Y~Girk~~~~--------------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFWL--------------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhccc--------------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 9987543210 1124478999999999997652
Q ss_pred ccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc-
Q 001302 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN- 500 (1104)
Q Consensus 422 ~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~- 500 (1104)
+.|-.+.|=.|++|||+-+....|...+.+..+.+.++|+.||||+|+ +.+||.||.||.-.+|.....|.+.....-
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 234456788999999999999999999999999999999999999999 999999999999999999988877654211
Q ss_pred hHHHHHHHHHHhhHHHHHHhHhhHhh--cCCCcEEEEEeccCCHHHHHHHHHHH----HHHHHH---HHh---c--C---
Q 001302 501 QEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAIL----TRNYQI---LTR---R--G--- 563 (1104)
Q Consensus 501 ~~~~~~~L~~~L~~~~lRR~k~dv~~--~lP~k~e~~v~v~ls~~Q~~~Y~~il----~~~~~~---l~~---~--~--- 563 (1104)
.......+++++...+.|+.|.+|.. .+||-.+.+....+++.+..+|+..- ...... +.+ . .
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 11334568888999999999999876 47999999999999998887776542 222222 111 0 0
Q ss_pred ----CchhHHHHHHHHHHHHhCCcc
Q 001302 564 ----GAQISLINVVMELRKLCCHPY 584 (1104)
Q Consensus 564 ----~~~~~l~~~~~~Lrk~~~hP~ 584 (1104)
.....+.+.+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 012457788999999999994
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.7e-29 Score=278.14 Aligned_cols=420 Identities=18% Similarity=0.232 Sum_probs=269.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc--CCCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~--p~~~ 360 (1104)
.+.|.||+.-+.-. -.+|++++.+||||||++|+.++...+....+.+|+++|+ -++.|-..-|.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46899999876443 2349999999999999999999887766655699999995 66678778888876 6678
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDEaH 438 (1104)
++.++|.-....... ...+..|+++|++++..|.. .+..-.+.+||+||||
T Consensus 89 i~~ltGev~p~~R~~---------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREE---------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHH---------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 889998654322111 12456799999999988743 3455578899999999
Q ss_pred cccCcccHHHHHH--Hhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCC----ChHHHHHHHh-------ccchHHH
Q 001302 439 RLKNKDSKLFSSL--KQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEFK-------DINQEEQ 504 (1104)
Q Consensus 439 rlkn~~s~~~~~l--~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~----~~~~F~~~f~-------~~~~~~~ 504 (1104)
|.-+..+..+-+- ..... .+.|+||||| -++.+.+...++-|..+... ...+-..... .+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 9987766554433 22233 3689999999 46667777777766554421 1111111111 1122233
Q ss_pred HHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHhCCc
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHP 583 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~-~~~~~~l~~~~~~Lrk~~~hP 583 (1104)
+..+.+.|+..+-.|++.--...+ .....+ -.++.+.... .... ..... ....-.++.++..+-++ .|+
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g~-----~~~~~~--~~~kdl~~~~-~~~~-~~a~~~~~~~~~~l~~~a~~~kl-~~a 290 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELGV-----IESSSP--VSKKDLLELR-QIRL-IMAKNEDSDKFRLLSVLAEAIKL-AHA 290 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc-----eeccCc--ccHhHHHHHH-HHHH-HhccCccHHHHHHHHHHHHHHHH-HHH
Confidence 444444444433333332111111 111111 1122222222 0000 00000 00000111111111111 111
Q ss_pred --------------ccc---CCCCC-Cc---------ccchHHHHHHH------hhhhHHHHHHHHHHHHH--HhCCeEE
Q 001302 584 --------------YML---EGVEP-DI---------EDTNESFKQLL------ESSGKLQLLDKMMVKLK--EQGHRVL 628 (1104)
Q Consensus 584 --------------~l~---~~~~~-~~---------~~~~~~~~~li------~~S~Kl~~L~~lL~~l~--~~g~kvL 628 (1104)
||. ..... .. ......+..++ -..+||..+.++++... ..+.|||
T Consensus 291 ~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvI 370 (542)
T COG1111 291 LELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVI 370 (542)
T ss_pred HHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEE
Confidence 000 00000 00 00001111111 13689999999999876 5678999
Q ss_pred EEecchhHHHHHHHHHhhCCCcEE-EEec--------CCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 629 IYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 629 IFsq~~~~ldiL~~~L~~~g~~~~-ridG--------~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
||+++..+++.|.++|...|.... ++-| +|++.+...+|+.|.++.-+ +|++|..|.+|||++++|.|
T Consensus 371 VFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred EEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEE
Confidence 999999999999999999988886 6666 37888999999999876544 89999999999999999999
Q ss_pred EEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 001302 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1104)
Q Consensus 700 Ii~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l 752 (1104)
|+|||.=+|-..+||+||.+| ++.-.||-|+++||-|+.-+..+.+|..-
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~ 497 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQK 497 (542)
T ss_pred EEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHH
Confidence 999999999999999999988 47778899999999999999998888643
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.8e-29 Score=296.22 Aligned_cols=362 Identities=20% Similarity=0.286 Sum_probs=268.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCC-e
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~-~ 360 (1104)
..+|||||.++++-+...+..++.|++..++|.|||+.++.++..+... +|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~----~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS----TLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC----EEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 3679999999997666655558899999999999999999998877444 9999995 66799998888887432 3
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEccHHHHhhcc--ccccCCcceEEEEcCc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dVvitsye~l~~~~--~~l~~~~w~~vIvDEa 437 (1104)
+..+.|.... .. ..|.|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3444443221 11 469999999998853 3333347999999999
Q ss_pred ccccCcccHHHHHHHhccccc-EEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHH
Q 001302 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1104)
Q Consensus 438 Hrlkn~~s~~~~~l~~l~~~~-rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~ 516 (1104)
|++....... .+..+...+ +|+|||||...+...+..+..++ .|..
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~-------------------------------g~~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLI-------------------------------GPIV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhc-------------------------------CCeE
Confidence 9997765443 333445555 99999999644422222222222 2222
Q ss_pred HHHhHhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 517 lRR~k~dv~--~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
......+.. ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 222222222 368899999999999999999888776665444332221 0 0
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
..............|+..+..++.... .+.+++||+......+.+...|...|+ ...++|.++..+|.++++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112333445678888888888766 889999999999999999999998888 999999999999999999998755
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh-CCCCe--EEEEEEeeCCCHHHHHHHHHHH
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi-GQ~k~--V~Vyrlvt~~TvEe~i~~~~~~ 748 (1104)
+.+|++++.+++|+|++.|+++|+..|.-++..++|++||+.|. ..++. +..|-++...+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 45899999999999999999999999999999999999999994 44444 7788888888888877665544
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.1e-28 Score=294.36 Aligned_cols=338 Identities=15% Similarity=0.182 Sum_probs=230.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc--CCC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~--p~~ 359 (1104)
.+.|||||.+++.-+. .+.++||..+||+|||++++.++..+.....+++||+||. .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3689999999986542 4567899999999999998777666555555599999995 77899999999976 333
Q ss_pred eEEE-EecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 360 NVVM-YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 360 ~vv~-~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
.+.. +.|... ....+|+|+|++.+......+ --.+++|||||||
T Consensus 188 ~~~~i~~g~~~----------------------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH 232 (501)
T PHA02558 188 AMHKIYSGTAK----------------------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECH 232 (501)
T ss_pred ceeEEecCccc----------------------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchh
Confidence 3322 222210 124679999999987643221 1267899999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++... .....+..+ .+.++++|||||....... ..+..++.|-.. ... ..++ +
T Consensus 233 ~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~i~~-----------~v~----~~~l---i----- 286 (501)
T PHA02558 233 LFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGDIFK-----------PVT----TSQL---M----- 286 (501)
T ss_pred cccch--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCCceE-----------Eec----HHHH---H-----
Confidence 99753 344555666 4678999999995432211 111111221110 000 0000 0
Q ss_pred HHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccch
Q 001302 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 597 (1104)
+ ...+.+.....+.+..++.....+. .. ...
T Consensus 287 ---~---~g~l~~~~~~~v~~~~~~~~~~~~~-------------~~------------------------------~~~ 317 (501)
T PHA02558 287 ---E---EGQVTDLKINSIFLRYPDEDRVKLK-------------GE------------------------------DYQ 317 (501)
T ss_pred ---h---CCCcCCceEEEEeccCCHHHhhhhc-------------cc------------------------------chH
Confidence 0 0123333334444544432111000 00 000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCc
Q 001302 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1104)
Q Consensus 598 ~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~ 677 (1104)
..+..+.....+..++.+++..+.+.|.++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+. .
T Consensus 318 ~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~ 395 (501)
T PHA02558 318 EEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--G 395 (501)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--C
Confidence 11122333455667777777777788999999999999999999999999999999999999999999999997532 2
Q ss_pred eEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC-eEEEEEEeeCC
Q 001302 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRG 736 (1104)
Q Consensus 678 ~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k-~V~Vyrlvt~~ 736 (1104)
.+++.|++..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.++-.-
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 333444599999999999999999999999999999999999998765 68999999643
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.96 E-value=5.8e-30 Score=241.58 Aligned_cols=133 Identities=56% Similarity=0.955 Sum_probs=123.0
Q ss_pred CCCCCCcccccCCCCCCCCCCccccccchhccCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHH
Q 001302 936 QPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1104)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~pL~e~e~~~l~~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~ 1015 (1104)
...++|++++.+ ++..++||++++++++.|+|||..||+.|++++||||+++++|+|+.++|.+||.+||++|+++|+.
T Consensus 9 ~~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~ 87 (145)
T PF06461_consen 9 ETGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMR 87 (145)
T ss_pred cccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHH
Confidence 344556666555 5555699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCC-CccccCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCCCCccc
Q 001302 1016 HITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1069 (1104)
Q Consensus 1016 ~~~e~~~d-~~~~~~~i~k~~~k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~ 1069 (1104)
|++|+.+| +++|+|||||+|+++++||+||++|+||++||++|+..|..++||.
T Consensus 88 HL~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 88 HLCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred HhcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 99999988 8999999999999999999999999999999999999999988884
No 28
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=2.5e-23 Score=252.28 Aligned_cols=318 Identities=17% Similarity=0.258 Sum_probs=215.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHH-HHHHHHhcC-----CCC-ceEEEeCc-ccHHHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai-~~l~~l~~~-----~~~-p~LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
++.|+|.+++..+ ..+.++|+..+||+|||++.+ .++..+... ..+ .+|||||+ .+..|+..++.++.
T Consensus 152 ~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 5889999998655 578899999999999999864 344554432 123 47999996 56688999999887
Q ss_pred CC--CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEE
Q 001302 357 PQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1104)
Q Consensus 357 p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~v 432 (1104)
.. +++.+.+|........... ....+|+|+|++.+..... .+.--...+|
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 43 5555666554433322221 1246899999988754321 1222346789
Q ss_pred EEcCcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
||||||++.... ..+...+..+.. ...+++|||.- .++-.+..
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~------------------------------ 327 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR------------------------------ 327 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH------------------------------
Confidence 999999987643 233444444543 35688999951 11111110
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
.++ ...| ....+-.+.++. .. .+++ .+
T Consensus 328 ----~l~---------~~~~-v~i~vg~~~l~~-----~~-------------------------~i~q----~~----- 354 (545)
T PTZ00110 328 ----DLC---------KEEP-VHVNVGSLDLTA-----CH-------------------------NIKQ----EV----- 354 (545)
T ss_pred ----HHh---------ccCC-EEEEECCCcccc-----CC-------------------------CeeE----EE-----
Confidence 000 0000 000000000000 00 0000 00
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
..+....|...|..+|..+...+.++|||++....++.|...|...|++...++|.++..+|..+++.
T Consensus 355 ------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 355 ------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred ------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 00112345666777777766678899999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
|..+... +|++|.++++|||++.+++||+||+++++..++|++||++|.|.+..+ |.|++.+
T Consensus 423 F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 423 FKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 9875443 899999999999999999999999999999999999999999986544 5556654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=3.5e-23 Score=248.87 Aligned_cols=314 Identities=18% Similarity=0.277 Sum_probs=211.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHH-HHHHHHhcCC--------CCceEEEeCc-ccHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai-~~l~~l~~~~--------~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
.++|+|.++++.+ ..|.++|++..+|+|||+..+ .++..+.... ....|||+|+ .+..|+.+.+..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999998866 678999999999999998864 3445554332 2368999995 666888888887
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcce
Q 001302 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (1104)
Q Consensus 355 ~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~ 430 (1104)
+.. ++++..++|+.+....++.. ....++|+|+|++++..... .+.--...
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 753 46788888875443332221 11357899999999864321 11112457
Q ss_pred EEEEcCcccccCccc--HHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHH
Q 001302 431 CMIVDEGHRLKNKDS--KLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1104)
Q Consensus 431 ~vIvDEaHrlkn~~s--~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~ 505 (1104)
+|||||||++.+..- .+...+..+. ....+++|||.- +++.++. .
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~-------------------------- 289 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---K-------------------------- 289 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---H--------------------------
Confidence 899999999876432 2334444442 235789999952 1111110 0
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
.++ ..+ ..+.+.... .... . +. .|-+.
T Consensus 290 --------~~~-----------~~~---~~v~~~~~~-------------------~~~~--~-------~~---~~~~~ 316 (475)
T PRK01297 290 --------QWT-----------TDP---AIVEIEPEN-------------------VASD--T-------VE---QHVYA 316 (475)
T ss_pred --------Hhc-----------cCC---EEEEeccCc-------------------CCCC--c-------cc---EEEEE
Confidence 000 000 011111000 0000 0 00 00000
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
+..+.|..+|..++.. ..+.++|||++....++.|...|...|+.+..++|.++..+|..
T Consensus 317 ------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 317 ------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred ------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 1123455666666543 23569999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
+++.|.++.. .+|++|.++++|||++++++||+||.++|+..++|+.||++|.|+...+. -|++.
T Consensus 377 ~~~~Fr~G~~---~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i--~~~~~ 441 (475)
T PRK01297 377 TLEGFREGKI---RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSI--SFAGE 441 (475)
T ss_pred HHHHHhCCCC---cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEE--EEecH
Confidence 9999976543 48999999999999999999999999999999999999999999865433 34444
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=4.7e-23 Score=246.89 Aligned_cols=308 Identities=18% Similarity=0.167 Sum_probs=207.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
..++|+|.++++-+ ..++++++..+||.|||+..+.-+ +.. .+..|||+|+ +++.++.+.+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~--l~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPA--LCS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHH--HHc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999866 467799999999999998753322 222 3578999995 6668888888765 45666
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccc-cCCcceEEEEcCcc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~---~~l-~~~~w~~vIvDEaH 438 (1104)
.+.+.........-..- .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665443321111000 01245789999999986533 222 33467899999999
Q ss_pred cccCccc-------HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 001302 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1104)
Q Consensus 439 rlkn~~s-------~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~ 511 (1104)
.+..... .+......+.....++|||||-.....++...+++-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865332 11222233445578999999954443444333332222111000 0
Q ss_pred hhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 512 L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
.-|.. .+.+.-..
T Consensus 197 ---------------~r~nl-~~~v~~~~--------------------------------------------------- 209 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRKT--------------------------------------------------- 209 (470)
T ss_pred ---------------CCCCc-EEEEEeCC---------------------------------------------------
Confidence 00000 00000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
+..+..+.+.+.. ...|.++||||......+.+...|...|+++..++|+++.++|..+++.|.
T Consensus 210 ---------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 210 ---------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred ---------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0011111222221 235677899999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 672 ~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.+.. .+|++|.+.|.|||++.+++||+|+++.++..+.|++||++|.|+...+.+|
T Consensus 274 ~g~~---~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDEI---QVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCC---cEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 6543 4899999999999999999999999999999999999999999988766554
No 31
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=234.98 Aligned_cols=422 Identities=19% Similarity=0.238 Sum_probs=246.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCccc-HHHHHHHHHHHcCCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLST-LRNWEREFATWAPQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~-l~qW~~E~~~~~p~~~v 361 (1104)
..||+||.+-+.-. - +.|+|+|.+||+|||..|+.++...++.. .++++++||+.. +.|-...|....-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999977543 3 89999999999999999988877766654 369999999754 56666777776634556
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccC---CcceEEEEcCcc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~---~~w~~vIvDEaH 438 (1104)
....|+...+.-.. ......+|++.|.+++..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 66666543322110 1124568999999999877544332 348999999999
Q ss_pred cccCccc--HHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCC-CChHHHHHHHhc------------cch
Q 001302 439 RLKNKDS--KLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKF-GSLEEFQEEFKD------------INQ 501 (1104)
Q Consensus 439 rlkn~~s--~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~-~~~~~F~~~f~~------------~~~ 501 (1104)
|.....+ .....+...+ ....|+|||||- ++.....+.+.=|....- .....-...|.. ...
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 9865443 2333333333 236799999997 777776666555544310 011111222211 111
Q ss_pred HHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCH-------------HHHH-HHHHHHHH-HHHHHHhcCCch
Q 001302 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSS-------------KQKE-YYKAILTR-NYQILTRRGGAQ 566 (1104)
Q Consensus 502 ~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~-------------~Q~~-~Y~~il~~-~~~~l~~~~~~~ 566 (1104)
......|..+++|++.+--.. .|.+.....-..+... .|+- .|...+.. +...+...+ -
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~g-i- 342 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDG-I- 342 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhc----CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcc-h-
Confidence 234456777777776544322 2222111110011100 1110 11111111 001111000 0
Q ss_pred hHHHHHHHHHHHHhCCc----cccCCCCCC-cccchH---HHHHH----HhhhhHHHHHHHHHHHHHHh--CCeEEEEec
Q 001302 567 ISLINVVMELRKLCCHP----YMLEGVEPD-IEDTNE---SFKQL----LESSGKLQLLDKMMVKLKEQ--GHRVLIYSQ 632 (1104)
Q Consensus 567 ~~l~~~~~~Lrk~~~hP----~l~~~~~~~-~~~~~~---~~~~l----i~~S~Kl~~L~~lL~~l~~~--g~kvLIFsq 632 (1104)
.+.+.+..+.....-- ++....+.. ...... .+..+ -...+|+..|.++|....+. ..|+|||+.
T Consensus 343 -r~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve 421 (746)
T KOG0354|consen 343 -RFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVE 421 (746)
T ss_pred -hhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEe
Confidence 0001111110000000 000000000 000000 00111 12478999999999877654 469999999
Q ss_pred chhHHHHHHHHHh-h--CCCcEEEEec--------CCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 633 FQHMLDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 633 ~~~~ldiL~~~L~-~--~g~~~~ridG--------~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
+...++.|..+|. . -|++...+-| +++..+.+++|+.|+++... +|++|..|.+|||+..||.||.
T Consensus 422 ~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 422 TRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVIC 498 (746)
T ss_pred hHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEE
Confidence 9999999999987 2 3556555555 46788899999999886554 8999999999999999999999
Q ss_pred ECCCCChhhHHHHHHhhHhhCCCCeEEEEEEee-CCCHHHHHHHHHHHHHH
Q 001302 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT-RGSIEERMMQMTKKKMV 751 (1104)
Q Consensus 702 ~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt-~~TvEe~i~~~~~~K~~ 751 (1104)
||..-||...+||+|| +|.-+ -.++-|.+ ...+|-.....+..|++
T Consensus 499 Yd~~snpIrmIQrrGR-gRa~n---s~~vll~t~~~~~~~E~~~~~~e~lm 545 (746)
T KOG0354|consen 499 YDYSSNPIRMVQRRGR-GRARN---SKCVLLTTGSEVIEFERNNLAKEKLM 545 (746)
T ss_pred ecCCccHHHHHHHhcc-ccccC---CeEEEEEcchhHHHHHHHHHhHHHHH
Confidence 9999999999999999 77544 44444444 22233333344444443
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=7.9e-23 Score=244.18 Aligned_cols=309 Identities=16% Similarity=0.227 Sum_probs=204.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHH-HHHHhcCC-----C--CceEEEeCc-ccHHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER-----I--SPHLVVAPL-STLRNWEREFATW 355 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~-l~~l~~~~-----~--~p~LIV~P~-s~l~qW~~E~~~~ 355 (1104)
.+.|+|.+++.-+ ..+.++|+..++|+|||+..+.. +..+.... . ..+|||||. .+..||..++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 5889999998766 46789999999999999986554 44443221 1 158999996 5668899999887
Q ss_pred cC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceE
Q 001302 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1104)
Q Consensus 356 ~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~ 431 (1104)
.. ++.++.+.|........... ...++|+|+|++.+.... ..+.--..++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 45666666655433221110 135789999999885432 2222335679
Q ss_pred EEEcCcccccCccc--HHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 432 MIVDEGHRLKNKDS--KLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 432 vIvDEaHrlkn~~s--~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
|||||||++-.... .+...+..+... ..+++|||+-. .+.++ ...+.
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l---~~~~~-------------------------- 202 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKAL---AEKLL-------------------------- 202 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHH---HHHHc--------------------------
Confidence 99999999865432 233344444433 47999999621 11111 10000
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
.......+.-..+. .. .+. +.+.
T Consensus 203 --------------------~~~~~i~~~~~~~~---------------------~~---------~i~----~~~~--- 225 (456)
T PRK10590 203 --------------------HNPLEIEVARRNTA---------------------SE---------QVT----QHVH--- 225 (456)
T ss_pred --------------------CCCeEEEEeccccc---------------------cc---------cee----EEEE---
Confidence 00000000000000 00 000 0000
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHH
Q 001302 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~ 668 (1104)
.+....|..+|..++.. ....++|||++.....+.|...|...|+....++|.++..+|..+++
T Consensus 226 --------------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 226 --------------FVDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred --------------EcCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 00011233333444332 23468999999999999999999999999999999999999999999
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
.|.++. +.+|++|.++++|||++.+++||+||++.++..|+|++||++|.|.+..+.+
T Consensus 290 ~F~~g~---~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 290 DFKSGD---IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHcCC---CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 997654 3489999999999999999999999999999999999999999998765443
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=6.3e-23 Score=245.95 Aligned_cols=313 Identities=18% Similarity=0.279 Sum_probs=215.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCCCC-ceEEEeCc-ccHHHHHHHHHHHc---CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---PQ 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~~~-p~LIV~P~-s~l~qW~~E~~~~~---p~ 358 (1104)
++.|+|.+++..+ ..+.+.|+..++|+|||...+. ++..+...... ..||+||. .+..||.+++..+. ++
T Consensus 26 ~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 5889999999876 4688999999999999987544 44444333223 68999995 56689999988764 57
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
+++..++|.......+... ....+|+|+|++.+..... .+.--.+++||+||
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred cEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 8888888876544333221 1357899999998865322 22223568999999
Q ss_pred cccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
||++-... ..+...+..+.. ...+++|||+-. ++-.+..
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~---------------------------------- 197 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAISQ---------------------------------- 197 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHHHH----------------------------------
Confidence 99986543 233344444433 356999999721 1110000
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
.++ .-| .. +.+.... ... . +. .+.+.
T Consensus 198 ~~~----------~~~--~~--i~~~~~~--------------------~~~--~-------i~---~~~~~-------- 223 (460)
T PRK11776 198 RFQ----------RDP--VE--VKVESTH--------------------DLP--A-------IE---QRFYE-------- 223 (460)
T ss_pred Hhc----------CCC--EE--EEECcCC--------------------CCC--C-------ee---EEEEE--------
Confidence 000 000 00 0000000 000 0 00 00000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
+....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..++|.++..+|+.+++.|.++
T Consensus 224 ----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 224 ----------VSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred ----------eCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 0112366677777754 2456899999999999999999999999999999999999999999999865
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.. .+|++|.++++|||++++++||+||.+.++..++|++||++|.|+.-. .|.|++.+
T Consensus 292 ~~---~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 292 SC---SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CC---cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 44 389999999999999999999999999999999999999999997644 45556553
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.91 E-value=1e-22 Score=246.32 Aligned_cols=314 Identities=16% Similarity=0.211 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcC--------CCCceEEEeCc-ccHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~--------~~~p~LIV~P~-s~l~qW~~E~~ 353 (1104)
..+.|+|.+++..+ ..|+++|+..+||+|||+..+. ++..+... .....|||+|. .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 36889999998766 4788999999999999998644 44444321 12268999996 55678888888
Q ss_pred HHcCC--CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcc
Q 001302 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 429 (1104)
Q Consensus 354 ~~~p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w 429 (1104)
.+... +.++.+.|.......+... ...++|+|+|++.+..... .+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 77643 4455555543322221110 1347899999988754211 2222345
Q ss_pred eEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHH
Q 001302 430 QCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~--s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~ 507 (1104)
.+|||||||++.... ..+...+..+.....+++|||.-. ++-.+...+..+.
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~----~v~~l~~~~~~~~---------------------- 325 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP----EVEKFASSLAKDI---------------------- 325 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH----HHHHHHHHhCCCC----------------------
Confidence 789999999986532 344455556666788999999621 1111111000000
Q ss_pred HHHHhhHHHHHHhHhhHhh-cCCCc--EEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcc
Q 001302 508 LHRMLAPHLLRRVKKDVMK-ELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1104)
Q Consensus 508 L~~~L~~~~lRR~k~dv~~-~lP~k--~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~ 584 (1104)
..+ .+.. ..|.. ....+.+.
T Consensus 326 -------~~i-----~~~~~~~~~~~v~q~~~~~~--------------------------------------------- 348 (518)
T PLN00206 326 -------ILI-----SIGNPNRPNKAVKQLAIWVE--------------------------------------------- 348 (518)
T ss_pred -------EEE-----EeCCCCCCCcceeEEEEecc---------------------------------------------
Confidence 000 0000 00000 00111110
Q ss_pred ccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh-CCCcEEEEecCCChHHH
Q 001302 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAER 663 (1104)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~R 663 (1104)
...|...|.++|........++|||++....++.|...|.. .|+++..++|+++..+|
T Consensus 349 ---------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 349 ---------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKER 407 (518)
T ss_pred ---------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHH
Confidence 11233334444544333456899999999999999999974 69999999999999999
Q ss_pred HHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
..+++.|.++... +|++|.++++|||++.+++||+||++.++..|+|++||++|.|.... ++.|++.+
T Consensus 408 ~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 408 REVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred HHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 9999999875543 89999999999999999999999999999999999999999997544 44455543
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=1.3e-22 Score=240.68 Aligned_cols=313 Identities=16% Similarity=0.212 Sum_probs=209.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHH-HHHHhcCC--------CCceEEEeCc-ccHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~-l~~l~~~~--------~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+.. +..+.... ...+||+||. .+..|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998765 57889999999999999987543 44443321 1258999995 566888888877
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcce
Q 001302 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1104)
Q Consensus 355 ~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~ 430 (1104)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 653 57777777765433222111 124689999999886432 223333567
Q ss_pred EEEEcCcccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHH
Q 001302 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1104)
Q Consensus 431 ~vIvDEaHrlkn~~--s~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~ 505 (1104)
+|||||||++-... ..+...+..+. ....+++|||.-. .+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHH-------------------------------
Confidence 99999999986543 22333333443 2235889999621 11110
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
... .+.......+ .-... .... + .+.++
T Consensus 208 ------~~~------------~~~~p~~i~v--~~~~~-------------------~~~~---------i----~~~~~ 235 (423)
T PRK04837 208 ------AFE------------HMNNPEYVEV--EPEQK-------------------TGHR---------I----KEELF 235 (423)
T ss_pred ------HHH------------HCCCCEEEEE--cCCCc-------------------CCCc---------e----eEEEE
Confidence 000 0000000111 00000 0000 0 00010
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
. .....|+..|..++.. ....++|||++....++.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112356666666654 24679999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
+++.|+++.. .+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~~---~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDL---DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCC---cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 9999987554 4899999999999999999999999999999999999999999976544 344544
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=4.1e-22 Score=237.31 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=208.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcC-----CCCceEEEeCcc-cHHHHHHHHHHHc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RISPHLVVAPLS-TLRNWEREFATWA 356 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~-----~~~p~LIV~P~s-~l~qW~~E~~~~~ 356 (1104)
.++.++|.+++..+ ..+.++|+...+|+|||+.++. ++..+... +...+||++|.. +..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 4678899999999999998654 44444321 123789999964 5678877777765
Q ss_pred C--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEE
Q 001302 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1104)
Q Consensus 357 p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~v 432 (1104)
. ++++..++|........... ...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 57788888865443221110 135689999998886432 22233356789
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
||||||++.... ..+...+..+. ....+++|||+-...+.++.. .+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~---------------------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RL---------------------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HH----------------------------
Confidence 999999986543 22222222232 235689999973111111100 00
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
+..... +.+..+.... ....|-+....
T Consensus 201 ------------------~~~~~~--i~~~~~~~~~--------------------------------~~i~~~~~~~~- 227 (434)
T PRK11192 201 ------------------LNDPVE--VEAEPSRRER--------------------------------KKIHQWYYRAD- 227 (434)
T ss_pred ------------------ccCCEE--EEecCCcccc--------------------------------cCceEEEEEeC-
Confidence 000000 1111000000 00000000000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
....|..+|..++.. ....++|||++....++.|...|...|+....++|.++..+|..+++.
T Consensus 228 ---------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 228 ---------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred ---------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 012355555555542 245799999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
|+.+.. .+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.++
T Consensus 291 f~~G~~---~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 291 LTDGRV---NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HhCCCC---cEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 976543 4899999999999999999999999999999999999999999987655543
No 37
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=3.2e-23 Score=228.61 Aligned_cols=340 Identities=17% Similarity=0.332 Sum_probs=236.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcC--C
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 358 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p--~ 358 (1104)
+..++||||...++-| +.-...++||+.-++|.|||+..+..+..+ .+.+||+|..++ +.||+..|..|.. +
T Consensus 299 Pst~iRpYQEksL~KM-FGNgRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHH-hCCCcccCceEEEecCCCCceeeeeeeeee----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 3468999999999877 222334569999999999999887766543 236799999655 7999999999982 3
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----------cccccCCc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPIK 428 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----------~~~l~~~~ 428 (1104)
-.+..|+.+...+ ......|+||||.++..- ..++..-.
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 3555665554432 124567999999999532 34678889
Q ss_pred ceEEEEcCcccccCcccHHH-HHHHhcccccEEEEecCCCCCCHHHHHHHHHhhc-CCCCCChHHHHHHHhccchHHHHH
Q 001302 429 WQCMIVDEGHRLKNKDSKLF-SSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD-AGKFGSLEEFQEEFKDINQEEQIS 506 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~-~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~-p~~~~~~~~F~~~f~~~~~~~~~~ 506 (1104)
|.++|+||+|-+- ++++ +.+..+++..+|+||||-+... |-..=||||- |..+. .. ..
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------An---------Wm 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------AN---------WM 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------cc---------HH
Confidence 9999999999863 3444 4445557788999999986433 1122234432 22211 11 11
Q ss_pred HHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 507 ~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
.|.+ ...+.......|+|+||+. .|+..+..+... ..++
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k--------r~lL---------------- 521 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK--------RMLL---------------- 521 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh--------hhee----------------
Confidence 1110 0134456677899999985 555544332110 0000
Q ss_pred CCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHH
Q 001302 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~ 666 (1104)
.+-+..|++...-|++....+|.|+||||..+-.|. .|--..|-+| |.|.|+..+|-++
T Consensus 522 ----------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk---~YAikl~Kpf--IYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 522 ----------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALK---EYAIKLGKPF--IYGPTSQNERMKI 580 (776)
T ss_pred ----------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHH---HHHHHcCCce--EECCCchhHHHHH
Confidence 112456888888888888889999999998866554 4444445555 7899999999999
Q ss_pred HHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC-ChhhHHHHHHhhHhhCCC----CeEEEEEEeeCCCHHHH
Q 001302 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 741 (1104)
Q Consensus 667 i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w-Np~~~~Qa~gR~hRiGQ~----k~V~Vyrlvt~~TvEe~ 741 (1104)
++.|+..+.-.- +.-+++|...|+|+.|+.+|-..+.. +-.+..||+||+.|--.. -++..|-||+++|.|-.
T Consensus 581 LqnFq~n~~vNT--IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNT--IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccce--EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999987554433 44479999999999999999998876 667789999999996532 25889999999998754
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=1.1e-21 Score=240.02 Aligned_cols=310 Identities=16% Similarity=0.220 Sum_probs=210.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHH-HHHHHHhcCCC-CceEEEeCc-ccHHHHHHHHHHHc---C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai-~~l~~l~~~~~-~p~LIV~P~-s~l~qW~~E~~~~~---p 357 (1104)
.++.|+|.+++..+ ..+.++|+..+||+|||++.+ .++..+..... ..+||+||. .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999998776 467889999999999999864 44444433322 368999996 56689999987764 6
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEc
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvD 435 (1104)
+++++.++|.......++.. ....+|+|+|++.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888775443322221 124689999998886432 12222356789999
Q ss_pred CcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHh
Q 001302 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1104)
Q Consensus 436 EaHrlkn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L 512 (1104)
|||.+-+.. ..+...+..+.. ...+++|||.- ..+.++ .
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i-------------------------------------~ 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRI-------------------------------------T 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHH-------------------------------------H
Confidence 999886543 234445555543 34689999951 111100 0
Q ss_pred hHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 513 ~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
..+ +.......+..... ... ...+.|..
T Consensus 199 ~~~------------l~~~~~i~i~~~~~-----------------------~~~-----------~i~q~~~~------ 226 (629)
T PRK11634 199 RRF------------MKEPQEVRIQSSVT-----------------------TRP-----------DISQSYWT------ 226 (629)
T ss_pred HHH------------cCCCeEEEccCccc-----------------------cCC-----------ceEEEEEE------
Confidence 000 00000000000000 000 00000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..+++.|..
T Consensus 227 -----------v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 -----------VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred -----------echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 0122355555555543 234689999999999999999999999999999999999999999999976
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
+.. .+|++|.+++.|||++.+++||+||++.++..|+|++||++|.|..-.+.+
T Consensus 294 G~~---~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 GRL---DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCC---CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 543 489999999999999999999999999999999999999999997654443
No 39
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=4.2e-22 Score=242.43 Aligned_cols=308 Identities=17% Similarity=0.267 Sum_probs=208.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHH-HHHHhcCC--------CCceEEEeCc-ccHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~-l~~l~~~~--------~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
.+.|.|..++..+ ..+.++|+..++|+|||+..+.. +..+.... ...+|||+|. .+..|+...+.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 6889999999876 57889999999999999987554 44443211 1378999996 666889999988
Q ss_pred HcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcc
Q 001302 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (1104)
Q Consensus 355 ~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w 429 (1104)
+.. ++.+..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 874 35677777765432211110 1257899999998865422 2233356
Q ss_pred eEEEEcCcccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHH
Q 001302 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~--s~~~~~l~~l~---~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~ 504 (1104)
.+|||||||++-... ..+...+..+. ....+++|||.- +.+.++
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l------------------------------ 209 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLEL------------------------------ 209 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHH------------------------------
Confidence 789999999985432 22223333343 235688999951 111110
Q ss_pred HHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEecc-CCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCc
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~-ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP 583 (1104)
...++ .-|. ...+... .+. ..++ |-
T Consensus 210 -------~~~~l----------~~p~--~i~v~~~~~~~-------------------------------~~i~----q~ 235 (572)
T PRK04537 210 -------AYEHM----------NEPE--KLVVETETITA-------------------------------ARVR----QR 235 (572)
T ss_pred -------HHHHh----------cCCc--EEEeccccccc-------------------------------ccee----EE
Confidence 00000 0000 0000000 000 0000 00
Q ss_pred cccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHH
Q 001302 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1104)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R 663 (1104)
+.+ .....|+..|..++.. ..+.++|||++....++.|.+.|...|+.+..++|.++..+|
T Consensus 236 ~~~-----------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYF-----------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEe-----------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 000 0112355566666643 357899999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
..+++.|.++. ..+|++|.++++|||++.+++||+||.++++..|+|++||++|.|....+..
T Consensus 297 ~~il~~Fr~G~---~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 297 ESLLNRFQKGQ---LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHcCC---CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999997644 3489999999999999999999999999999999999999999998755443
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=8.8e-22 Score=242.08 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=203.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+++|+|.++++-+ ..+.++++..+||.|||+..+..+. .. .+.+|||+|. +++.++.+.+... +..+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999766 4788999999999999987643322 22 3579999995 6667888888764 45555
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEaHrl 440 (1104)
.+.+..........+.- ......+++++|++.+... ...+...+.++|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554433221111100 0123567899999987642 23344456789999999998
Q ss_pred cCccc---HHHHHH----HhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 441 kn~~s---~~~~~l----~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
..... ..+..+ ..+.....++||||+-.....++...+.+-+|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65321 122222 23334568999999854433343333332211110000 0
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
.-|.....++ .
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------~------ 219 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------E------ 219 (607)
T ss_pred -------------CCCcceeeee--------------------------------------------------e------
Confidence 0000000000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
...++..+..++.. ..+.++||||+.....+.+...|...|+++..++|+++.++|..+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222221 3578999999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
.. .+|++|.+.|.|||++.++.||+||++.++..+.|++||++|.|....+.
T Consensus 286 ~~---~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 DL---QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CC---CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 43 38999999999999999999999999999999999999999999765543
No 41
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.3e-21 Score=223.60 Aligned_cols=312 Identities=19% Similarity=0.284 Sum_probs=223.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhc------CCCCc-eEEEeCccc-HHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPLST-LRNWEREFATW 355 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~------~~~~p-~LIV~P~s~-l~qW~~E~~~~ 355 (1104)
.+.|-|..+.-.+ ..|+.+|....+|+|||+.- |-.+.++.. .+.+| +||++|+.- -.|-+.++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4677777764433 67899999999999999984 556667665 12345 899999754 47788899988
Q ss_pred cCCCe--EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceE
Q 001302 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1104)
Q Consensus 356 ~p~~~--vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~ 431 (1104)
...+. .++++|.......+++. ....+|+|+|+..+.... ..+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 85544 66666665544444442 246899999999987543 2334345679
Q ss_pred EEEcCcccccC--cccHHHHHHHhc-ccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHH
Q 001302 432 MIVDEGHRLKN--KDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1104)
Q Consensus 432 vIvDEaHrlkn--~~s~~~~~l~~l-~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~ 507 (1104)
+|+|||.++-. ...+..+.+..+ .+. ..|+-|||-- .
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~----------------------------------- 283 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWP----K----------------------------------- 283 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeecc----H-----------------------------------
Confidence 99999999854 566788888888 444 3677788830 0
Q ss_pred HHHHhhHHHHHHhHhhHhhcCCCcEEEEEec-cCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRV-ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 508 L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v-~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
-+|.+..+.+. -+....+... .+. ....+.++-.
T Consensus 284 --------~v~~lA~~fl~--~~~~i~ig~~~~~~---------------------------a~~~i~qive-------- 318 (519)
T KOG0331|consen 284 --------EVRQLAEDFLN--NPIQINVGNKKELK---------------------------ANHNIRQIVE-------- 318 (519)
T ss_pred --------HHHHHHHHHhc--CceEEEecchhhhh---------------------------hhcchhhhhh--------
Confidence 11111222221 1111222111 000 0000111111
Q ss_pred CCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH-HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
.+...+|...|..+|.... ..+.|+||||+...+.+.|...|...+|+...|+|..++.+|..
T Consensus 319 ----------------~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 319 ----------------VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred ----------------hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 1224568888888888876 44569999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
+++.|..+... +|++|..++.|||++.+++||+||+|-|...|++|+||.+|-|++-....
T Consensus 383 ~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 383 VLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 99999765554 89999999999999999999999999999999999999999888755443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=2e-21 Score=239.47 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=208.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+++|+|.++++-+ ..+++++++.+||.|||+.+...+ +.. .+.+|||+|. +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999866 467899999999999999875332 222 3578999995 6778888888875 56677
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEaHrl 440 (1104)
.++++........-..- ......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~~----------------------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKA----------------------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 77766443321111000 0123578999999988542 23455567899999999998
Q ss_pred cCccc-------HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 441 kn~~s-------~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
..... .+......+.....++||||+-.....++...+.+-.+..+.+ .|
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 64321 2223333344455899999985444344333332211111000 00
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
...+...+.++|... .+.++||||......+.|.++|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 011222233333321 267899999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
. +.+|++|.+.|.|||+++++.||+|+++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4 358999999999999999999999999999999999999999999766554
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.88 E-value=2.8e-21 Score=228.17 Aligned_cols=316 Identities=18% Similarity=0.267 Sum_probs=205.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
..+.|+|..++..+ ..+.+.|+..++|+|||+.++..+...... ....+|||+|. .+..|+.+.+..... .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998776 578889999999999999875544444332 23479999996 555777777776653 3
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDE 436 (1104)
..+....|....+...... ....+|+|+|++.+.... ..+..-.+++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4455556654433322111 123589999998875321 122233568999999
Q ss_pred cccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
||++.... ..+...+..+.. ...+++|||+- +...++.. .|.. .
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~~--------------~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFMR--------------D 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHcC--------------C
Confidence 99986532 344555555543 35789999962 11111000 0000 0
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
|..+ ..+.+. ..+.......+.+..
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~~----------------------------------------------------- 250 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVEK----------------------------------------------------- 250 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecCh-----------------------------------------------------
Confidence 0000 000000 000000000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
...++..+..++..+ ...++|||+.....++.+...|...++.+..++|.++..+|+.+++.|+++
T Consensus 251 ------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 001222223333221 346899999999999999999999999999999999999999999999865
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.. .+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. -.++.|++.+
T Consensus 317 ~~---~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 317 ST---RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CC---CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 43 4899999999999999999999999999999999999999999864 4455667654
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=9.8e-21 Score=234.03 Aligned_cols=308 Identities=17% Similarity=0.168 Sum_probs=203.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
..+||+|.++++.+ ..|.++|+..+||.|||+....-+. .. .+.+|||+|+ +|+.++...+.. .++.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL--~~--~GiTLVISPLiSLmqDQV~~L~~--~GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPAL--IC--PGITLVISPLVSLIQDQIMNLLQ--ANIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHH--Hc--CCcEEEEeCHHHHHHHHHHHHHh--CCCeEE
Confidence 47999999999766 5788999999999999988643332 12 3579999996 565545555544 256677
Q ss_pred EEecChhHHHH---HHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---cccccC----CcceEE
Q 001302 363 MYVGTSQARNI---IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP----IKWQCM 432 (1104)
Q Consensus 363 ~~~g~~~~r~~---i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~---~~~l~~----~~w~~v 432 (1104)
.+.|....... ++... .....++++++|++.+... ...+.. -...+|
T Consensus 529 ~L~s~~s~~eq~~ilr~l~-----------------------s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQELS-----------------------SEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred EEECCCCHHHHHHHHHHHH-----------------------hcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 77665443221 22110 0124678999999987532 112211 236789
Q ss_pred EEcCcccccCccc---HHHHH----HHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHH
Q 001302 433 IVDEGHRLKNKDS---KLFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1104)
Q Consensus 433 IvDEaHrlkn~~s---~~~~~----l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~ 505 (1104)
||||||.+..... .-++. ...+.....++||||.-.....++...|.+..+..|. ..|
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf--------- 650 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSF--------- 650 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------ccc---------
Confidence 9999999865331 11222 2234455679999998555444444443322211110 000
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
.-|.....++ +-. .
T Consensus 651 ---------------------~RpNL~y~Vv--~k~---k---------------------------------------- 664 (1195)
T PLN03137 651 ---------------------NRPNLWYSVV--PKT---K---------------------------------------- 664 (1195)
T ss_pred ---------------------CccceEEEEe--ccc---h----------------------------------------
Confidence 0011000010 000 0
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
..+..|.+++... ..+...||||......+.|..+|...|++...++|+++.++|..
T Consensus 665 ----------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~ 721 (1195)
T PLN03137 665 ----------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAF 721 (1195)
T ss_pred ----------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHH
Confidence 0001111222111 12457899999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEE
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1104)
+++.|..+.. .+|++|.|.|.|||++.++.||+|+.+-++..|.|++||++|.|+...+.+|+
T Consensus 722 vqe~F~~Gei---~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 722 VQKQWSKDEI---NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHhcCCC---cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999977544 48999999999999999999999999999999999999999999987665543
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=4.3e-21 Score=245.43 Aligned_cols=356 Identities=17% Similarity=0.212 Sum_probs=207.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcC-CCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC-cccHHHHHHHHHHHcCCC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~-~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P-~s~l~qW~~E~~~~~p~~ 359 (1104)
+..|||||.++++.+...+.. .++++|.+.+|+|||+++++++..++.. ..+++||||| ..++.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999777665544 4678999999999999999999888765 4469999999 577899999998864321
Q ss_pred e--EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcce
Q 001302 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (1104)
Q Consensus 360 ~--vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~-------~l~~~~w~ 430 (1104)
. +....+... +.+. .......|+|+|++++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 100111000 0000 011346799999999865321 12234688
Q ss_pred EEEEcCcccccCc-----------------ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHH
Q 001302 431 CMIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1104)
Q Consensus 431 ~vIvDEaHrlkn~-----------------~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~ 493 (1104)
+||||||||.... .+...+.+..+ ...+|+|||||..+. .++|. .| .
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t-~~~FG-----~p-v-------- 606 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHT-TEIFG-----EP-V-------- 606 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc-CccEEEEecCCccch-hHHhC-----Ce-e--------
Confidence 9999999996321 12233334333 358999999997432 11111 00 0
Q ss_pred HHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEe----ccCC-HHHHHHHHHHHHHHHHHHHhcCCchhH
Q 001302 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (1104)
Q Consensus 494 ~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~----v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~ 568 (1104)
....-.+.+. ..+++ ..-||....... +... ..+...|...... +....
T Consensus 607 ---~~Ysl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~----- 660 (1123)
T PRK11448 607 ---YTYSYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT----- 660 (1123)
T ss_pred ---EEeeHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc-----
Confidence 0000001110 00110 001333322111 1111 1111122211000 00000
Q ss_pred HHHHHHHHHHHhCCccccCCCCCCcccchHHH-HHHHhhhhHHH-HHHHHHHHHHH-hCCeEEEEecchhHHHHHHHHHh
Q 001302 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESF-KQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLT 645 (1104)
Q Consensus 569 l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~-~~li~~S~Kl~-~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~ 645 (1104)
.+.........+ +.++.. .... ++..++..+.. .+.|+||||.....++.+.+.|.
T Consensus 661 --------------------l~d~~~~~~~~~~~~vi~~-~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 661 --------------------LEDEVDFEVEDFNRRVITE-SFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred --------------------CcHHHhhhHHHHHHHHhhH-HHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 000000000000 111111 1111 22333333322 23699999999998887777765
Q ss_pred hC------CC---cEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHH
Q 001302 646 FK------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1104)
Q Consensus 646 ~~------g~---~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~g 716 (1104)
.. ++ .+..++|+++ +++.+|++|.++... .+|+++...++|+|.+.+++||++.+.-++..+.|++|
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 32 22 4567999875 578899999764433 57999999999999999999999999999999999999
Q ss_pred hhHhhCC---CCeEEEEEEe
Q 001302 717 RAHRLGQ---TNKVMIFRLI 733 (1104)
Q Consensus 717 R~hRiGQ---~k~V~Vyrlv 733 (1104)
|+.|..- +....||.++
T Consensus 796 RgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 796 RATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hhccCCccCCCceEEEEehH
Confidence 9999865 5667888876
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.87 E-value=3.7e-20 Score=235.52 Aligned_cols=322 Identities=19% Similarity=0.218 Sum_probs=201.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCC------CC-ceEEEeCc-ccHHHHHHH---
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER------IS-PHLVVAPL-STLRNWERE--- 351 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~------~~-p~LIV~P~-s~l~qW~~E--- 351 (1104)
..|+|+|.+++.-+ ..+.++|+..+||+|||+.++. ++..+.... .+ .+|+|+|+ ++..++.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 35999999998765 5788999999999999998744 455554321 12 58999996 455555543
Q ss_pred ----HHHHc-------CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc
Q 001302 352 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1104)
Q Consensus 352 ----~~~~~-------p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~ 420 (1104)
+..++ |++.+.+.+|+.......+.. ....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 33343 467888888876543321110 12568999999998532
Q ss_pred c------ccccCCcceEEEEcCcccccCcc--cHHHHHH---Hhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCC
Q 001302 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSL---KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1104)
Q Consensus 421 ~------~~l~~~~w~~vIvDEaHrlkn~~--s~~~~~l---~~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~ 487 (1104)
. ..|. ...+|||||+|.+.+.. ..+...+ ..+. ...+++||||. .++.++.. +|......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1222 34689999999987542 2222222 2222 34679999996 33443332 22211000
Q ss_pred ChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 001302 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1104)
Q Consensus 488 ~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~ 567 (1104)
.. . ++..+ +...........+.++...
T Consensus 234 ~~----------~------------r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 GE----------P------------RDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred CC----------C------------CceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 00 0 00000 0000000000000000000
Q ss_pred HHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh-
Q 001302 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1104)
Q Consensus 568 ~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~- 646 (1104)
+.... . ......+...|..+...++++|||++.....+.+...|..
T Consensus 261 -----------------l~~~~------~----------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTP------A----------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------ccccc------c----------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00000 0 0000112233444445688999999999999998888865
Q ss_pred -----CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh
Q 001302 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 647 -----~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi 721 (1104)
.+..+..++|+++.++|..+++.|.++. ..+|++|.++++|||++.+|+||+|+++.++..++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467899999999999999999997654 34899999999999999999999999999999999999999975
Q ss_pred -CCCCeEEEEE
Q 001302 722 -GQTNKVMIFR 731 (1104)
Q Consensus 722 -GQ~k~V~Vyr 731 (1104)
|+.....++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4555555554
No 47
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=7e-21 Score=205.84 Aligned_cols=323 Identities=21% Similarity=0.291 Sum_probs=230.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHH-HHHHHHHHhcCCCC-ceEEEeCcccHH-HHHHHHHHHc--CCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLR-NWEREFATWA--PQM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiq-ai~~l~~l~~~~~~-p~LIV~P~s~l~-qW~~E~~~~~--p~~ 359 (1104)
.+.+.|.+++-.+ ..|+.+|.+.|+|+|||.. +|-++..|+.+... ..||++|..-+. |-...|+... -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888887655 6889999999999999998 57788888887554 569999987665 4555577765 357
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC---cceEEEEcC
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCMIVDE 436 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~---~w~~vIvDE 436 (1104)
.+.++.|..+-.....+. ..+.||+|.|+..+......-+.+ ...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888888887766543332 247899999999997654422222 345799999
Q ss_pred cccccCcc--cHHHHHHHhccccc-EEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNKD--SKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~~~~-rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
|.|+-|.. -.+-..|+.+.... .+|.|||- .. .+.+|..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~----------------------------------kv~kL~r--- 254 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TK----------------------------------KVRKLQR--- 254 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-ch----------------------------------hhHHHHh---
Confidence 99998864 35667777776554 47788883 11 1222210
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
+ .+-. ++.|.-+. .|+ ++..|.+ -||+-
T Consensus 255 --------a----sl~~----p~~v~~s~----ky~----------------------tv~~lkQ----~ylfv------ 282 (476)
T KOG0330|consen 255 --------A----SLDN----PVKVAVSS----KYQ----------------------TVDHLKQ----TYLFV------ 282 (476)
T ss_pred --------h----ccCC----CeEEeccc----hhc----------------------chHHhhh----heEec------
Confidence 0 0100 01111110 111 1111222 12221
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
...-|-..|..||.++ .|..+||||....+.+.+.-+|+..|+....++|.++...|..+++.|+++
T Consensus 283 -----------~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 283 -----------PGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred -----------cccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 1122445566667654 468999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
.-+ +|++|+.++.|+|.+.+|+||+||.|-+...|++|.||..|.| +.-.+..||+. +|-..+++.+
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHH
Confidence 544 8999999999999999999999999999999999999999999 56667788988 5555555443
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.87 E-value=6.9e-20 Score=226.32 Aligned_cols=305 Identities=15% Similarity=0.250 Sum_probs=197.9
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~--~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p--~ 358 (1104)
.+|.++|..++..+...... ..+.+|..++|+|||+.++..+......+ ..+||++|+.. ..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 57999999999888665433 24689999999999998865554444432 38999999655 4899999999986 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
+++.+++|+..........+. ......+|+|+|+..+.... .+ -+..+|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-cc--cccceEEEechh
Confidence 788889987554321111100 01246789999998876421 22 245799999999
Q ss_pred cccCcccHHHHHHHh-cc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~-l~---~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
++.-. ....+.. .. ..+.|++||||....+. +..+ .+..
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l~-------------- 410 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDLD-------------- 410 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCcc--------------
Confidence 97432 2222322 22 56789999999643211 1000 0000
Q ss_pred HHHHHhHhhHhhcCCCcEE--EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 515 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e--~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
..+...+|+... ....+.-..
T Consensus 411 -------~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 411 -------TSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred -------eeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 000112222100 000000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchh--------HHHHHHHHHhh--CCCcEEEEecCCChHH
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~--------~ldiL~~~L~~--~g~~~~ridG~~~~~~ 662 (1104)
+ ..+...+......|++++||+.... .+..+.+.|.. .++++..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 1111222223346788888886542 23344444442 4788999999999999
Q ss_pred HHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC-ChhhHHHHHHhhHhhCCCCeEE
Q 001302 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 663 R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
|..+++.|.++.. .+|++|.+.++|||++.+++||+++.+. +-..+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~~---~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEV---DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCC---CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999987554 3899999999999999999999999974 6788999999999998765544
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.86 E-value=2.8e-20 Score=232.08 Aligned_cols=330 Identities=17% Similarity=0.177 Sum_probs=212.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc-CCCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~-p~~~v 361 (1104)
+|+++|.+++..+ ..|.++|+...||+|||+.. +.++..+........|||+|+ .+..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999866 67899999999999999986 445555555443489999996 55567778888775 35788
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--------ccccCCcceEEE
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--------~~l~~~~w~~vI 433 (1104)
.+|+|+...... .. -....+|+|||++++.... ..|. +..+||
T Consensus 112 ~~~~Gdt~~~~r-~~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887654321 00 0123689999999986321 1122 346899
Q ss_pred EcCcccccCc-ccHHHHHHHhcc--------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHH
Q 001302 434 VDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1104)
Q Consensus 434 vDEaHrlkn~-~s~~~~~l~~l~--------~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~ 504 (1104)
|||||.+.+. .+.+...+..+. ....+++|||- +|..++... +...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~---l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR---LIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH---HcCC--------------------
Confidence 9999998652 333333333331 23578999995 232332111 1000
Q ss_pred HHHHHHHhhHHHHHHhHhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCc
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~-~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP 583 (1104)
|.. .+.. .-|......+... |
T Consensus 218 ---------~~~------~i~~~~~~~~~~~~~~~~-------------------------------------------p 239 (742)
T TIGR03817 218 ---------PVV------AVTEDGSPRGARTVALWE-------------------------------------------P 239 (742)
T ss_pred ---------CeE------EECCCCCCcCceEEEEec-------------------------------------------C
Confidence 000 0000 0111100010000 0
Q ss_pred cccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--------CCcEEEEe
Q 001302 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (1104)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--------g~~~~rid 655 (1104)
.+........... + -.....+..+|..+ ...+.++|||++.....+.|..+|... +.++..++
T Consensus 240 ~~~~~~~~~~~~~----r-~~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 240 PLTELTGENGAPV----R-RSASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred Ccccccccccccc----c-cchHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 0000000000000 0 00011233344444 446889999999999999998887653 56788899
Q ss_pred cCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 656 G~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
|+++.++|..+++.|.++ .+.+|++|.++++|||+...|+||+|+.|-+...+.|++||++|.|+... ++-+++.
T Consensus 311 gg~~~~eR~~ie~~f~~G---~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRDG---ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHcC---CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 999999999999999764 44589999999999999999999999999999999999999999997644 3445555
Q ss_pred CCHHHHHHH
Q 001302 736 GSIEERMMQ 744 (1104)
Q Consensus 736 ~TvEe~i~~ 744 (1104)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667776554
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=7.8e-20 Score=227.25 Aligned_cols=305 Identities=15% Similarity=0.205 Sum_probs=197.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcCC--
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQ-- 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~--~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p~-- 358 (1104)
.+|+++|..++.-+...+..+ .+.+|..++|+|||+.++..+...... ...+||++|+.. ..|..+.|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-GYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999998886655432 478999999999999986655444433 237999999754 57899999998865
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
+++.+++|+..........+. ......+|+|+|+..+... ..+. +..+|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~-v~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDD-VEFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhccc-chhc--ccceEEEechh
Confidence 788888887654221111100 0123679999999887532 1232 45789999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++.- .....+... ...+.|+|||||+...+ .+..+ .+..
T Consensus 394 rfg~---~qr~~l~~~~~~~~iL~~SATp~prtl----~~~~~----------------g~~~----------------- 433 (681)
T PRK10917 394 RFGV---EQRLALREKGENPHVLVMTATPIPRTL----AMTAY----------------GDLD----------------- 433 (681)
T ss_pred hhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHH----HHHHc----------------CCCc-----------------
Confidence 9832 233344433 24688999999953211 00000 0000
Q ss_pred HHhHhhHhhcCCCcE--EEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~--e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
-.+...+|+.. .....+.-
T Consensus 434 ----~s~i~~~p~~r~~i~~~~~~~------------------------------------------------------- 454 (681)
T PRK10917 434 ----VSVIDELPPGRKPITTVVIPD------------------------------------------------------- 454 (681)
T ss_pred ----eEEEecCCCCCCCcEEEEeCc-------------------------------------------------------
Confidence 00001122110 00000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchh--------HHHHHHHHHhhC--CCcEEEEecCCChHHHHH
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~--------~ldiL~~~L~~~--g~~~~ridG~~~~~~R~~ 665 (1104)
.+...+...+......|++++|||..+. .+..+.+.|... ++++..++|+++..+|+.
T Consensus 455 ------------~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 455 ------------SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred ------------ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 0001111222333367889999997542 233445555433 578999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC-ChhhHHHHHHhhHhhCCCCeEE
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
++++|.++.. .+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....+.
T Consensus 523 i~~~F~~g~~---~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 523 VMAAFKAGEI---DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHcCCC---CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 9999986544 4899999999999999999999999974 5688899999999988754443
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=6.1e-20 Score=230.98 Aligned_cols=308 Identities=17% Similarity=0.199 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcCC--
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQ-- 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~--~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p~-- 358 (1104)
.++.|.|..++..+..-+..+ .+.++..++|+|||..++..+......+ ..+||+||+.. ..|....|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999998886654443 5789999999999998765544333332 48999999655 57888899988755
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
+++.+++|...........+- ....+.+|||+|+..+.... .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~~----------------------l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILKE----------------------LASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHHH----------------------HHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 455666665432221111000 01235789999997764322 222 44789999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++.. .....+..+. ....|+|||||+...+.. ++....++..
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~-------------------------------- 626 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSI-------------------------------- 626 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEE--------------------------------
Confidence 9742 3344555554 457899999996422110 0000000000
Q ss_pred HHhHhhHhhcCCCcEEEEE---eccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v---~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
. ..||.....+ .++.+.
T Consensus 627 -------I-~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 627 -------I-ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred -------E-ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 0 0111110000 000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--CCcEEEEecCCChHHHHHHHHHHcc
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
..+...++.. ...|.+++||++.+..++.+.+.|... ++++..++|.++..+|..++.+|.+
T Consensus 647 ---------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 0000011122 235789999999999999999999874 7899999999999999999999987
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCC-CChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~-wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
+... +|++|.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|-|+..
T Consensus 711 Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 5544 89999999999999999999999986 4566889999999998764 444555544
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=3.1e-19 Score=229.25 Aligned_cols=306 Identities=18% Similarity=0.219 Sum_probs=199.5
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcCC--
Q 001302 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~--~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p~-- 358 (1104)
.++.+.|.+++.-+...+.. ..+.++..+||+|||.+++..+...... ...+||+||+..| .|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999876554433 3678999999999999876443333222 3489999997655 7788888876644
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
+++.+++|...........+- ......+|+|+|++.+..+. .--+.++|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 456566664333221111000 01235789999998775322 22356799999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++.. .....++.+. ....|++||||++..+.- .+..+.++.. +
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~-------------------------------I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSI-------------------------------I 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEE-------------------------------E
Confidence 9833 2334455554 457899999996433110 0000000000 0
Q ss_pred HHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccch
Q 001302 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 597 (1104)
..||.....+ +. +... ..
T Consensus 777 ---------~~~p~~r~~v----------------------------------------~~-----~~~~-~~------- 794 (1147)
T PRK10689 777 ---------ATPPARRLAV----------------------------------------KT-----FVRE-YD------- 794 (1147)
T ss_pred ---------ecCCCCCCCc----------------------------------------eE-----EEEe-cC-------
Confidence 0111100000 00 0000 00
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--CCcEEEEecCCChHHHHHHHHHHccCCC
Q 001302 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1104)
Q Consensus 598 ~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~R~~~i~~Fn~~~~ 675 (1104)
.......++..+. .|.+++||++.+..++.+.+.|... ++++..++|.++..+|.+++.+|.++..
T Consensus 795 -----------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~ 862 (1147)
T PRK10689 795 -----------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 (1147)
T ss_pred -----------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 0001122333333 4679999999999999999999876 7899999999999999999999987554
Q ss_pred CceEEEeecCcccccccccCCCEEEEECCC-CChhhHHHHHHhhHhhCCCCeEE
Q 001302 676 SRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 676 ~~~v~Llstragg~GINL~~ad~VIi~D~~-wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
. +|++|.+.+.|||++.+++||+.+++ ++...+.|+.||++|.|.+..+.
T Consensus 863 ~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 863 N---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred C---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 4 89999999999999999999998885 67788999999999998765443
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.3e-19 Score=211.47 Aligned_cols=329 Identities=21% Similarity=0.324 Sum_probs=223.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhc--CCCCc-eEEEeCcccH-HHHHHHHHHHcC-
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPLSTL-RNWEREFATWAP- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~--~~~~p-~LIV~P~s~l-~qW~~E~~~~~p- 357 (1104)
..+.|.|..++--+ ..|+..|....+|+|||..- |.++..+.. ....+ .||++|+.-| .|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 36889999998655 57799999999999999874 556666542 22223 9999997555 677778877763
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEE
Q 001302 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (1104)
Q Consensus 358 --~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vI 433 (1104)
.+++++++|...-...+... . ...||||.|+..+.... ..+..-...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------K-RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------h-cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57778888776554444332 1 14899999999887432 234444567899
Q ss_pred EcCcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHH
Q 001302 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1104)
Q Consensus 434 vDEaHrlkn~~--s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~ 510 (1104)
+|||.++-+.. ..+...+..+.. ...++.|||--. . +..|
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~----------------------------------i~~l-- 222 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-D----------------------------------IREL-- 222 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-H----------------------------------HHHH--
Confidence 99999997763 345555555554 566889999521 1 1111
Q ss_pred HhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCC
Q 001302 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1104)
Q Consensus 511 ~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~ 590 (1104)
.+.++- - |. .+.+..... ... ..+ ..|.|+.
T Consensus 223 -~~~~l~----------~-p~---~i~v~~~~~-------------------~~~----------~~~-i~q~~~~---- 253 (513)
T COG0513 223 -ARRYLN----------D-PV---EIEVSVEKL-------------------ERT----------LKK-IKQFYLE---- 253 (513)
T ss_pred -HHHHcc----------C-Cc---EEEEccccc-------------------ccc----------ccC-ceEEEEE----
Confidence 111110 0 00 111110000 000 000 0000000
Q ss_pred CCcccchHHHHHHHhh-hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 591 PDIEDTNESFKQLLES-SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 591 ~~~~~~~~~~~~li~~-S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
+.. ..|+.+|..++..... .++|||+.....++.|...|...|+++..|+|++++.+|..+++.
T Consensus 254 -------------v~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 254 -------------VESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred -------------eCCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 001 1477777777765432 379999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHH
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K 749 (1104)
|+++... +|++|+++++||+++..++||+||.+.++..|++++||.+|.|.+- .-+.|++. .-|...+....+.
T Consensus 319 F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 319 FKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred HHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 9865444 8999999999999999999999999999999999999999999543 44556665 2355555555554
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=1.6e-18 Score=218.69 Aligned_cols=316 Identities=19% Similarity=0.180 Sum_probs=198.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcC-CCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERISPHLVVAP-LSTLRNWEREFATWAP-QMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p-~~~v 361 (1104)
+|+|+|.+++.-+ +..+.+++++.+||+|||+.+.. ++..+. ..+++|+|+| .++..|+.++|.++.+ +.++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v 97 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVRV 97 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEE
Confidence 6999999998642 35788999999999999999854 444443 2358999999 5777889999988753 6788
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc----cccCCcceEEEEcCc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDEG 437 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~----~l~~~~w~~vIvDEa 437 (1104)
..++|+...+.. .....+|+|+|++.+..... .+. ..++|||||+
T Consensus 98 ~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE~ 146 (737)
T PRK02362 98 GISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDEV 146 (737)
T ss_pred EEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEECc
Confidence 888886432210 11356899999998743221 122 3579999999
Q ss_pred ccccCccc--HHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 001302 438 HRLKNKDS--KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1104)
Q Consensus 438 Hrlkn~~s--~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~ 511 (1104)
|.+.+... .+-..+..+ .....++||||. .|..++... +....+.+.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~w---l~~~~~~~~---------------------- 199 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELADW---LDAELVDSE---------------------- 199 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHHH---hCCCcccCC----------------------
Confidence 99965321 221222222 234679999997 345554432 222111000
Q ss_pred hhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 512 L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
.+| .| ....+.... . ++ . .. . +..+. .
T Consensus 200 ~rp-------------v~-l~~~v~~~~--~----~~----------~--~~-~----------------~~~~~-~--- 226 (737)
T PRK02362 200 WRP-------------ID-LREGVFYGG--A----IH----------F--DD-S----------------QREVE-V--- 226 (737)
T ss_pred CCC-------------CC-CeeeEecCC--e----ec----------c--cc-c----------------cccCC-C---
Confidence 000 00 000000000 0 00 0 00 0 00000 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC------------------------
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1104)
.. ...++. ++......++++|||++.......+...|...
T Consensus 227 --~~----------~~~~~~----~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (737)
T PRK02362 227 --PS----------KDDTLN----LVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVS 290 (737)
T ss_pred --cc----------chHHHH----HHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcc
Confidence 00 001111 22222346789999999888766665555321
Q ss_pred ------------CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----EC-----CCC
Q 001302 648 ------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SDW 706 (1104)
Q Consensus 648 ------------g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D-----~~w 706 (1104)
...+..++|+++..+|..+.+.|.++ .+.+|++|.+++.|||+++..+||. || .+.
T Consensus 291 ~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G---~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~ 367 (737)
T PRK02362 291 DTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR---LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPI 367 (737)
T ss_pred CccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC---CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeC
Confidence 13577889999999999999999764 3458999999999999999877775 77 477
Q ss_pred ChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 707 NPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 707 Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
++..+.|++|||+|.|....-.++-++..
T Consensus 368 s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 368 PVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 88999999999999998765555555543
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=1.5e-17 Score=193.25 Aligned_cols=328 Identities=14% Similarity=0.188 Sum_probs=197.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC-cccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~ 384 (1104)
+++..++|+|||.+++..+...... ..+++++|+| .+++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5789999999999988877665543 3458999999 57778999999888643 5666676543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEccHHHHhhcccc-c-------cCCcceEEEEcCcccccCccc-HHHHHHHhcc
Q 001302 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1104)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~-l-------~~~~w~~vIvDEaHrlkn~~s-~~~~~l~~l~ 455 (1104)
. ...... .............+++++|++.+...... + ..+...+||+||+|.+..... .+...+..+.
T Consensus 76 ~-~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 E-EFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred h-hHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 000000 00000001123567999999987643222 1 122336899999999875322 2333333332
Q ss_pred --cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEE
Q 001302 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1104)
Q Consensus 456 --~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e 533 (1104)
....+++|||+- ..+..++. .+. ..+
T Consensus 153 ~~~~~~i~~SATlp----~~l~~~~~----------------------------------~~~-----------~~~--- 180 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFLKEYAE----------------------------------KIG-----------YVE--- 180 (358)
T ss_pred HcCCCEEEEecCch----HHHHHHHh----------------------------------cCC-----------Ccc---
Confidence 235699999962 00000000 000 000
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHH
Q 001302 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1104)
Q Consensus 534 ~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L 613 (1104)
........+. +....|++..... ....|...+
T Consensus 181 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 181 FNEPLDLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred cccCCCCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 0000000000 0001122211000 011244455
Q ss_pred HHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCC--cEEEEecCCChHHHHHH----HHHHccCCCCceEEEeecCcc
Q 001302 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 614 ~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~~R~~~----i~~Fn~~~~~~~v~Llstrag 687 (1104)
.+++..+ ..+.++|||++....++.+...|...+. .+..++|.++..+|.+. ++.|.++. ..+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~---~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE---KFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC---CeEEEECcch
Confidence 5555433 4578999999999999999999987766 48999999999999764 78886533 3489999999
Q ss_pred cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC----eEEEEEEeeCC---CHHHHHHHHHHHHH
Q 001302 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k----~V~Vyrlvt~~---TvEe~i~~~~~~K~ 750 (1104)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++..+++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999995 8999988765 889999999999999763 45565554444 56667776666554
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.79 E-value=2.5e-17 Score=207.24 Aligned_cols=317 Identities=20% Similarity=0.194 Sum_probs=194.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC-CCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p-~~~ 360 (1104)
.+|+|+|.+++.- .+..+.++|++.++|+|||+.+ ++++..+... .+.+|+|+|. ++..++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-GGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 3699999999863 1257899999999999999998 5555555433 3589999995 666888888887752 577
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc----cccCCcceEEEEcC
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~----~l~~~~w~~vIvDE 436 (1104)
+..++|+...... .....+|+|+|++.+..... .+. ..++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7888886432110 01357899999998754221 222 457999999
Q ss_pred cccccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
+|.+... ...+...+..+. ....++||||. .|..++... +....+... + +
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~w---l~~~~~~~~------~----------------r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAEW---LNAELVVSD------W----------------R 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHHH---hCCccccCC------C----------------C
Confidence 9998643 334444444443 34678999997 234554432 222111000 0 0
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
..|.... ++ .. .+.+... ...
T Consensus 200 -------------pv~l~~~-~~-~~-------------------------------------------~~~~~~~-~~~ 220 (720)
T PRK00254 200 -------------PVKLRKG-VF-YQ-------------------------------------------GFLFWED-GKI 220 (720)
T ss_pred -------------CCcceee-Ee-cC-------------------------------------------CeeeccC-cch
Confidence 0110000 00 00 0000000 000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh---------------------------
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--------------------------- 646 (1104)
... ...+..++..+...|.++|||++.......+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001122223334578899999887655443333311
Q ss_pred ------CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE-------ECC-CCChhhHH
Q 001302 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDS-DWNPHADL 712 (1104)
Q Consensus 647 ------~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi-------~D~-~wNp~~~~ 712 (1104)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|||+++.++||. ++. +.....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999864 3458999999999999998887774 222 22345789
Q ss_pred HHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
|++|||+|.|..+.-.++-+++.+.
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776656665665443
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.79 E-value=6.4e-18 Score=211.69 Aligned_cols=302 Identities=20% Similarity=0.215 Sum_probs=189.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC-CCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p-~~~v 361 (1104)
.+|+|+|.++++.+ ..+.+++++.+||+|||+++...+...... .+.+++|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 678899999999999999986555443332 2488999995 666888888887652 4667
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCcceEEEEcCc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----~~~l~~~~w~~vIvDEa 437 (1104)
....|+...... .....+|+|+|++.+... ...+. ++++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 677775432110 012468999999876432 11222 4579999999
Q ss_pred ccccCcc-c-HHHHHHH---hcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 001302 438 HRLKNKD-S-KLFSSLK---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1104)
Q Consensus 438 Hrlkn~~-s-~~~~~l~---~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~ 511 (1104)
|.+.... . .+-..+. .+. ....++||||+ .|..++. .++....+..
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~----------------------- 196 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS----------------------- 196 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC-----------------------
Confidence 9986432 1 2222222 222 23579999997 2344433 2222211100
Q ss_pred hhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 512 L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
. ....| ....++... ..+ .+....
T Consensus 197 -----------~-~r~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 197 -----------N-FRPVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred -----------C-CCCCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 0 00011 111111000 000 000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC------------------------
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1104)
.+ ..+..++......|+++|||++.....+.+...|...
T Consensus 221 ----------------~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------cc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00 0022334444456789999999888777666666432
Q ss_pred -CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECC---------CCChhhHHHHHHh
Q 001302 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1104)
Q Consensus 648 -g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~---------~wNp~~~~Qa~gR 717 (1104)
...+..++|+++.++|..+.+.|.++. +.+|++|.+++.|||+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g~---i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNRY---IKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcCC---CeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 123667899999999999999997643 348999999999999996 67888764 3577889999999
Q ss_pred hHhhCCCCe
Q 001302 718 AHRLGQTNK 726 (1104)
Q Consensus 718 ~hRiGQ~k~ 726 (1104)
|+|.|....
T Consensus 360 AGR~g~d~~ 368 (674)
T PRK01172 360 AGRPGYDQY 368 (674)
T ss_pred CCCCCCCCc
Confidence 999997655
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=2.2e-17 Score=200.39 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..+.+.+..+...|..|||||......+.|...|...|+++..++|.+...+|..+...|+. + .++++|.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4679999999999888899999999999999999999999999999999999987777665554433 2 3799999
Q ss_pred ccccccccc---------CCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 686 agg~GINL~---------~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
.+|.|+|++ ..++||.++++-+. .+.|+.||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999 78999999999665 5599999999999775544
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=203.03 Aligned_cols=313 Identities=22% Similarity=0.216 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCC-C----C-ceEEEeCcccHHH-HHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-I----S-PHLVVAPLSTLRN-WEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~-~----~-p~LIV~P~s~l~q-W~~E~~~~ 355 (1104)
.+++|.|..++.-+ ..|.|+++..+||+|||..| +.++..+...+ . + .+|.|.|+..|.+ -.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 46899999998766 68999999999999999998 45666676652 1 2 5799999766644 55566666
Q ss_pred c--CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc------cccccCC
Q 001302 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1104)
Q Consensus 356 ~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~------~~~l~~~ 427 (1104)
. -++.+-+-||+....... ......+||+|||+|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~--------------------------r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQ--------------------------KMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHhh--------------------------hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 4 256666777765432211 11235789999999998543 3345555
Q ss_pred cceEEEEcCcccccCc--ccHHHHHHHhcc----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccch
Q 001302 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~--~s~~~~~l~~l~----~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~ 501 (1104)
. +|||||.|.+.+. .++++-.|..+. .-.|++||||= .++.+ ...||.+..-
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~--------------- 208 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD--------------- 208 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC---------------
Confidence 5 5999999999864 456666655543 24689999994 23333 3334433210
Q ss_pred HHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhC
Q 001302 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1104)
Q Consensus 502 ~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~ 581 (1104)
+ -.-+......+.++.|.++-... .
T Consensus 209 ------------~------~~Iv~~~~~k~~~i~v~~p~~~~--~----------------------------------- 233 (814)
T COG1201 209 ------------P------CEIVDVSAAKKLEIKVISPVEDL--I----------------------------------- 233 (814)
T ss_pred ------------c------eEEEEcccCCcceEEEEecCCcc--c-----------------------------------
Confidence 0 00000001111111111110000 0
Q ss_pred CccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCC-CcEEEEecCCCh
Q 001302 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1104)
Q Consensus 582 hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g-~~~~ridG~~~~ 660 (1104)
.. ..=...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 234 -------------~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 234 -------------YD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred -------------cc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 00 000112333444455566689999999999999999998876 899999999999
Q ss_pred HHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhh-HhhCCCCeEEE
Q 001302 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMI 729 (1104)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~-hRiGQ~k~V~V 729 (1104)
++|..+-++|.++. ...++||....+|||.-..|.||.|.+|-.-...+|++||+ ||+|....-.|
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~i 357 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGII 357 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEE
Confidence 99999999998765 34799999999999999999999999999999999999999 77886544433
No 60
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=4.8e-17 Score=201.45 Aligned_cols=361 Identities=15% Similarity=0.122 Sum_probs=200.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeC-cccHHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~------~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~qW~~E~~~~ 355 (1104)
.-.|+||..||+-+...... .++|+|.+.+|+|||++++.++..++... ..++||||| ..+..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34899999999988766544 46799999999999999999988877543 348999999 56779999999998
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc-ccccCC----cce
Q 001302 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI----KWQ 430 (1104)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~-~~l~~~----~w~ 430 (1104)
.++... -.++ ...+... .......|+|||.+.+.... ..+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753111 0111 1111110 01123569999999997521 112221 123
Q ss_pred EEEEcCcccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 431 ~vIvDEaHrlkn~~s~~~~~l~-~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
+||+|||||... ......++ .+....+++|||||+...-.+ +...|...|+..
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~--------------t~~~f~~~fg~~---------- 421 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRD--------------TSLTFAYVFGRY---------- 421 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccc--------------ccccccCCCCCe----------
Confidence 899999998643 23444553 566789999999997532111 001111001110
Q ss_pred HHhhHHHHHHhHhhHhh-cCCCcEEEEEecc--CCHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHhCCcc
Q 001302 510 RMLAPHLLRRVKKDVMK-ELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPY 584 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~-~lP~k~e~~v~v~--ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~~~~Lrk~~~hP~ 584 (1104)
+..+-+ +..+.. .+.|.....+.+. ++... .+..+............. ...+......+...
T Consensus 422 --i~~Y~~---~~AI~dG~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 488 (667)
T TIGR00348 422 --LHRYFI---TDAIRDGLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKKI----- 488 (667)
T ss_pred --EEEeeH---HHHhhcCCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhh-----
Confidence 000111 011111 1222222222221 21111 111111111100000000 00011111111111
Q ss_pred ccCCCCCCcccchHHHHHHHhhhhHHHHHH-HHHHHH----HHhCCeEEEEecchhHHHHHHHHHhhC-----CCcEEEE
Q 001302 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLD-KMMVKL----KEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERI 654 (1104)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~-~lL~~l----~~~g~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~ri 654 (1104)
+.+...+..+. .++..+ ...+.|.+|||.....+..+.+.|... +...+.+
T Consensus 489 -------------------~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~ 549 (667)
T TIGR00348 489 -------------------LFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVM 549 (667)
T ss_pred -------------------hcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEe
Confidence 11111111111 122221 223579999999988887777666432 3455667
Q ss_pred ecCCChH---------------------HHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHH
Q 001302 655 DGKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQ 713 (1104)
Q Consensus 655 dG~~~~~---------------------~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Q 713 (1104)
+|+.+.+ ....++++|..+ +.+-+|+++....+|+|.+.++++++.-|--+ +..+|
T Consensus 550 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQ 626 (667)
T TIGR00348 550 TGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQ 626 (667)
T ss_pred cCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHH
Confidence 7765433 234789999764 33457888999999999999999999988665 56899
Q ss_pred HHHhhHhh-CC-CCeEEEEEEee
Q 001302 714 AMARAHRL-GQ-TNKVMIFRLIT 734 (1104)
Q Consensus 714 a~gR~hRi-GQ-~k~V~Vyrlvt 734 (1104)
++||+.|+ +. +....|+.++.
T Consensus 627 ai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 627 AIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHhccccCCCCCCEEEEECcC
Confidence 99999995 43 44567877764
No 61
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.2e-17 Score=173.43 Aligned_cols=313 Identities=19% Similarity=0.260 Sum_probs=219.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHH-HHHHHHHHhcCCC-CceEEEeCcccH-HHHHHHHHHHcC--CCe
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPLSTL-RNWEREFATWAP--QMN 360 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiq-ai~~l~~l~~~~~-~p~LIV~P~s~l-~qW~~E~~~~~p--~~~ 360 (1104)
+...|..++--+ .+|+++|.....|+|||.+ +|+++..+.-... ...||+.|..-+ .|-..-+..... +..
T Consensus 50 PS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 50 PSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred chHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 344677776554 6889999999999999987 5666665533322 378999997655 455555555543 455
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEaH 438 (1104)
+....|.+.--..++..+ ...+|+.-|+..+... ...|..-...++|+|||.
T Consensus 126 ~hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EEEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 566666665444443321 3567888888877543 445666677899999999
Q ss_pred cccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHH
Q 001302 439 RLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1104)
Q Consensus 439 rlkn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~ 515 (1104)
.+.|. ..+++...+.+. ....+++|||- +.|+..+.++..+++.
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv----------------------------- 226 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV----------------------------- 226 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce-----------------------------
Confidence 98654 567888888887 45678999995 2343333333332221
Q ss_pred HHHHhHhhHhhcCCCcEEEEEeccCCHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 516 LLRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q-~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
...+-+-+++-+- +++|-++-.
T Consensus 227 ----------------rilvkrdeltlEgIKqf~v~ve~----------------------------------------- 249 (400)
T KOG0328|consen 227 ----------------RILVKRDELTLEGIKQFFVAVEK----------------------------------------- 249 (400)
T ss_pred ----------------eEEEecCCCchhhhhhheeeech-----------------------------------------
Confidence 1111222232221 111111000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
..=|+..|.+|-..|- -...+|||+.....|.|.+.+...++.+..++|.++.++|.+++++|.++.
T Consensus 250 -----------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 250 -----------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred -----------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 0114444555544442 237899999999999999999999999999999999999999999999887
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
+. +|++|+.-+.||+++.++.||.||.|-|+..|++||||.+|.|.+-- ...||...
T Consensus 317 Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv--ainFVk~~ 373 (400)
T KOG0328|consen 317 SR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSD 373 (400)
T ss_pred ce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce--EEEEecHH
Confidence 76 89999999999999999999999999999999999999999997543 34667654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=2e-17 Score=202.54 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.9
Q ss_pred HHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHH-----HHHHHHcc----CC----CCceEEEeecCcc
Q 001302 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1104)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~-----~~i~~Fn~----~~----~~~~v~Llstrag 687 (1104)
...+.++|||++.+..++.|...|...++ ..++|.++..+|. .++++|.. +. .....+||+|+++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 45678999999999999999999998887 8999999999999 78999975 21 1123589999999
Q ss_pred cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCe--EEEEEE
Q 001302 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~--V~Vyrl 732 (1104)
+.|||+.. ++||++..+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999985 999987766 5799999999999998643 455544
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1e-17 Score=186.34 Aligned_cols=356 Identities=18% Similarity=0.244 Sum_probs=215.0
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCcEEEEcCCCchHHHH-HHHHHHHHhcCCCC--ceEEEeCccc-HHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPLST-LRNWEREFATW 355 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~-----~~~~~ILademGlGKTiq-ai~~l~~l~~~~~~--p~LIV~P~s~-l~qW~~E~~~~ 355 (1104)
.++|-|...+-|+..-.. ..+...++..+|+|||+. +|-++..|.+.... +.|||+|... ..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999999999865443 355678999999999998 56666666555333 8899999655 57899999999
Q ss_pred cCC--CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC---cce
Q 001302 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1104)
Q Consensus 356 ~p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~---~w~ 430 (1104)
++. +-|....|...-+...++..- .....+.||+|+|+..+......-+.+ +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 976 455556666555544443210 011236799999999998765543333 456
Q ss_pred EEEEcCcccccCccc--HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 431 CMIVDEGHRLKNKDS--KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 431 ~vIvDEaHrlkn~~s--~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
++|||||.||.+..- .+...+..++...++.+. ..++.+..-..|..++.. ...+
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~---------------~t~~ 354 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSEL---------------LTKL 354 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHH---------------Hhhc
Confidence 899999999976432 233333333333232221 111111111111110000 0000
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
..+.| +.++-.+-+.+.+.... +..| -..||.++-.
T Consensus 355 -~~~~~---------------------------~l~kL~~satLsqdP~K--------------l~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 355 -GKLYP---------------------------PLWKLVFSATLSQDPSK--------------LKDL--TLHIPRLFHV 390 (620)
T ss_pred -CCcCc---------------------------hhHhhhcchhhhcChHH--------------Hhhh--hcCCCceEEe
Confidence 00011 11111111111111111 1111 1244433322
Q ss_pred CCCCc---ccchHHHHHHHhhhh--HHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh----hCCCcEEEEecCCC
Q 001302 589 VEPDI---EDTNESFKQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1104)
Q Consensus 589 ~~~~~---~~~~~~~~~li~~S~--Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~ 659 (1104)
..+.. .-+.......+-... |-..+..++.. ....++|+|+........|...|. .-+.++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 21100 000111111122222 33445555554 457799999999888777776665 44666777999999
Q ss_pred hHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 660 ~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
...|.+.+.+|+.++.. +||++++.+.||++...+.||.||+|-.-..|++|.||..|-||... .|.|+..
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~ 539 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDK 539 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeecc
Confidence 99999999999876654 89999999999999999999999999999999999999999999654 4455544
No 64
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=177.00 Aligned_cols=313 Identities=18% Similarity=0.296 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh-cC-C---CC--ceEEEeCcccHH----HHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-R---IS--PHLVVAPLSTLR----NWEREF 352 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~-~~-~---~~--p~LIV~P~s~l~----qW~~E~ 352 (1104)
..+.|-|..++-.+ .++..+++-..+|+|||+..+.=+..+. .. . ++ -.|||+|+.-|. +-...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998766 6889999999999999998755444443 22 1 22 459999976553 344456
Q ss_pred HHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCc
Q 001302 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1104)
Q Consensus 353 ~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----~~~l~~~~ 428 (1104)
..+.|++++.++.|.....+.+..+. ....+|+|.|+..+... ...+..-.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 66678999999999977666554432 23567999999887543 23344335
Q ss_pred ceEEEEcCcccccCc--ccHHHHHHHhcccccEE-EEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHH
Q 001302 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~--~s~~~~~l~~l~~~~rl-lLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~ 505 (1104)
-.++|+|||.|+-.. ...+...|..+..++|- |.|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 679999999999654 44566667777766665 4577731 111
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEecc-C--CHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCC
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-L--SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~-l--s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~h 582 (1104)
+.|. .. .|-.-....|... + +|. ++.+
T Consensus 203 ~dL~----ra-----------GLRNpv~V~V~~k~~~~tPS------------------------~L~~----------- 232 (567)
T KOG0345|consen 203 EDLA----RA-----------GLRNPVRVSVKEKSKSATPS------------------------SLAL----------- 232 (567)
T ss_pred HHHH----Hh-----------hccCceeeeecccccccCch------------------------hhcc-----------
Confidence 1111 00 1100001111000 0 000 0000
Q ss_pred ccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh--CCCcEEEEecCCCh
Q 001302 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (1104)
Q Consensus 583 P~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~ 660 (1104)
-| ..+.+.-|+..|..+|.. ....|+|||...-...++....|.. .+.+.+.++|.++.
T Consensus 233 ~Y-----------------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 EY-----------------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred ee-----------------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00 112244577777777776 4567999998888888877776653 47889999999999
Q ss_pred HHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEE
Q 001302 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1104)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1104)
..|..++..|....+. +|++|+.++.|||++..|.||.||||-+|..+.+|-||..|.|..-...||-+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999874444 79999999999999999999999999999999999999999998866666543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=3e-16 Score=192.40 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=109.6
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
....|+..|.+.+......|.++||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34678999999998887889999999999999999999999999999999999887777666656543 2 379999
Q ss_pred Ccccccccc---cCCC-----EEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHH
Q 001302 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 685 ragg~GINL---~~ad-----~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~ 745 (1104)
..+|.|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|..-.... |+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 999999999 5777 99999999999999999999999998755433 23 346666544
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.74 E-value=4.7e-17 Score=196.20 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..+.+.+..+.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|..... .++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEec
Confidence 3568888888888888999999999999999999999999999999999998 6789999999954333 4899999
Q ss_pred cccccccccC-------CCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 686 agg~GINL~~-------ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.+|.|+|+.. .-+||.++.+-|+..+.|+.||++|.|..-....|
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 9999999988 66999999999999999999999999988655443
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.2e-15 Score=183.44 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=106.4
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
....|...|.+++..+...|..+|||+......+.|...|...|+++..|+|... +|+..+..|..... .++|+|
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g---~VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG---RITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC---cEEEEc
Confidence 3467899999999988778889999999999999999999999999999999854 56666666643332 379999
Q ss_pred Cccccccccc---CCC-----EEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHH
Q 001302 685 RAGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 685 ragg~GINL~---~ad-----~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~ 745 (1104)
..+|.|+|+. .+. +||.||.+-|+..|.|++||++|.|..-.+.. |+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHHh
Confidence 9999999998 444 99999999999999999999999997644432 33 345555544
No 68
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=9.8e-17 Score=189.95 Aligned_cols=353 Identities=16% Similarity=0.184 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCC-cEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeC-cccHHHHHHHHHHHcCCC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~-~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~qW~~E~~~~~p~~ 359 (1104)
...+|+||..+++.+...+.+|+ ..+|++.+|+|||.+||+++..|+..+ .+++|.++- ++++.|=..+|..+.|+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 36799999999999988888765 488999999999999999999998864 569999999 678888888999999987
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcceEE
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCM 432 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~-------~l~~~~w~~v 432 (1104)
.++.+..... ....+.|.|+||+++..... .+..-.||+|
T Consensus 243 ~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlI 289 (875)
T COG4096 243 TKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLI 289 (875)
T ss_pred cceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEE
Confidence 6655443221 11357899999999976432 2333469999
Q ss_pred EEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHh
Q 001302 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1104)
Q Consensus 433 IvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L 512 (1104)
|||||||- . ...++.+..+-...+++|||||-..--..-+.+++ -.|-
T Consensus 290 vIDEaHRg--i-~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-g~Pt---------------------------- 337 (875)
T COG4096 290 VIDEAHRG--I-YSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-GEPT---------------------------- 337 (875)
T ss_pred Eechhhhh--H-HhhhHHHHHHHHHHHHhhccCcccccccccccccC-CCcc----------------------------
Confidence 99999983 1 12233555555666778899995421111111111 0000
Q ss_pred hHHHHHHhHhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 513 APHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 513 ~~~~lRR~k~dv~~-~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
...-.+..|.+ .|-|...+-|.+...- +=-.|....++ ..+ -.+. ++. +
T Consensus 338 ---~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~ser--ek~----------------~g~~------i~~--d 387 (875)
T COG4096 338 ---YAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSER--EKL----------------QGEA------IDE--D 387 (875)
T ss_pred ---eeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchh--hhh----------------hccc------cCc--c
Confidence 00001111221 1222222222222110 00001110000 000 0000 000 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHh---C---CeEEEEecchhHHHHHHHHHhhC-----CCcEEEEecCCCh
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVGG 660 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~---g---~kvLIFsq~~~~ldiL~~~L~~~-----g~~~~ridG~~~~ 660 (1104)
+.......+...+..-.--..+.+.+.....+ | .|.||||.....++.|...|... |-=...|+|...
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~- 466 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE- 466 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch-
Confidence 00000000000011111223344444444333 3 49999999999999999888653 233557888754
Q ss_pred HHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhC-------CCC-eEEEEEE
Q 001302 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIFRL 732 (1104)
Q Consensus 661 ~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiG-------Q~k-~V~Vyrl 732 (1104)
+-++.|+.|-. ......+.+|...+..|||.+.+-.+|++-.--+-..+.|.+||+-|+. |.| ...|+.+
T Consensus 467 -~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf 544 (875)
T COG4096 467 -QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDF 544 (875)
T ss_pred -hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEh
Confidence 55777999976 4444568999999999999999999999999999999999999999963 444 3677777
Q ss_pred e
Q 001302 733 I 733 (1104)
Q Consensus 733 v 733 (1104)
+
T Consensus 545 ~ 545 (875)
T COG4096 545 V 545 (875)
T ss_pred h
Confidence 6
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.73 E-value=4.2e-16 Score=190.29 Aligned_cols=324 Identities=16% Similarity=0.193 Sum_probs=194.8
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH----------HHHh--c-C-CCCceEEEeCcc-cHH
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF--G-E-RISPHLVVAPLS-TLR 346 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l----------~~l~--~-~-~~~p~LIV~P~s-~l~ 346 (1104)
....|++.|...-+-+...+..++.+|+..++|+|||.|.=-++ ..+. . . ..++++|++|.. +..
T Consensus 157 ~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 157 SKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred ccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 33578888888877777888999999999999999998842222 1111 1 1 234899999964 445
Q ss_pred HHHHHHHHHc-----CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc
Q 001302 347 NWEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS 421 (1104)
Q Consensus 347 qW~~E~~~~~-----p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~ 421 (1104)
|...++.+.. ++..+.+..|+..... ... .....++++.|.....
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l--- 286 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL--- 286 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc---
Confidence 6677775432 3455566666554210 000 0114578888754311
Q ss_pred ccccCCcceEEEEcCcccccCcccHHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhcc
Q 001302 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI 499 (1104)
Q Consensus 422 ~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~--~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~ 499 (1104)
..| -..++||+||||..-.....+...++.... ...+++|||.-. ....+ ..|+..
T Consensus 287 ~~L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~---------------- 344 (675)
T PHA02653 287 NKL--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPN---------------- 344 (675)
T ss_pred ccc--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcC----------------
Confidence 122 246789999999975554444444443322 357999999721 11111 112110
Q ss_pred chHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 001302 500 NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKL 579 (1104)
Q Consensus 500 ~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~ 579 (1104)
|..+. .. ...+.|.....+.....+.+...|-.
T Consensus 345 --------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~----------------------------- 377 (675)
T PHA02653 345 --------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE----------------------------- 377 (675)
T ss_pred --------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH-----------------------------
Confidence 00000 00 00112222222222211111111100
Q ss_pred hCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--CCcEEEEecC
Q 001302 580 CCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGK 657 (1104)
Q Consensus 580 ~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~ 657 (1104)
..|..++..+.......+..+|||+.....++.+.+.|... ++.+..++|+
T Consensus 378 ---------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~ 430 (675)
T PHA02653 378 ---------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGK 430 (675)
T ss_pred ---------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCC
Confidence 00111111111111124568999999999999999999876 7999999999
Q ss_pred CChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEEC----CC--------CChhhHHHHHHhhHhhCCCC
Q 001302 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 658 ~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D----~~--------wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
++.. ++++++|.. ++...+|++|..++.||+++.+++||-++ |. .+...+.||.||++|. +
T Consensus 431 Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~ 503 (675)
T PHA02653 431 VPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---S 503 (675)
T ss_pred cCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---C
Confidence 9864 567778742 23456899999999999999999999887 21 2666788999998887 4
Q ss_pred eEEEEEEeeCCCH
Q 001302 726 KVMIFRLITRGSI 738 (1104)
Q Consensus 726 ~V~Vyrlvt~~Tv 738 (1104)
+-.+|+|+++...
T Consensus 504 ~G~c~rLyt~~~~ 516 (675)
T PHA02653 504 PGTYVYFYDLDLL 516 (675)
T ss_pred CCeEEEEECHHHh
Confidence 6888899988754
No 70
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.9e-16 Score=178.64 Aligned_cols=308 Identities=19% Similarity=0.273 Sum_probs=206.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCC-----------CceEEEeCc-ccHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~-----------~p~LIV~P~-s~l~qW~~ 350 (1104)
..+.|+|..++.-+ ..|++.+.+.++|+|||..- |-++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35778998887655 78899999999999999886 446667765421 257999996 56688889
Q ss_pred HHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc----cc
Q 001302 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SL 424 (1104)
Q Consensus 351 E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~----~l 424 (1104)
|..++. ..++.++.+|..+.+...+. ....+|++++|...+..-.+ .|
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~--------------------------~~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRF--------------------------IKRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhh--------------------------hccCccEEEecCchhhhhhhcceeeh
Confidence 998886 34566666666554443332 12578999999998864321 23
Q ss_pred cCCcceEEEEcCcccccCc---ccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHH
Q 001302 425 KPIKWQCMIVDEGHRLKNK---DSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 496 (1104)
Q Consensus 425 ~~~~w~~vIvDEaHrlkn~---~s~~~~~l~~l~-----~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f 496 (1104)
..+ .++|+|||.++-.. .-.+.+.+.... ...-++.|||--
T Consensus 225 ~~~--k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----------------------------- 273 (482)
T KOG0335|consen 225 DNC--KFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----------------------------- 273 (482)
T ss_pred hhC--cEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC-----------------------------
Confidence 333 48999999998542 223333333332 234466777630
Q ss_pred hccchHHHHHHHHHHhhHHHHH-HhH---hhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 001302 497 KDINQEEQISRLHRMLAPHLLR-RVK---KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1104)
Q Consensus 497 ~~~~~~~~~~~L~~~L~~~~lR-R~k---~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1104)
..+++ +...|+.- .+. .-+...-......+++|.
T Consensus 274 ------~~iq~---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~--------------------------------- 311 (482)
T KOG0335|consen 274 ------KEIQR---LAADFLKDNYIFLAVGRVGSTSENITQKILFVN--------------------------------- 311 (482)
T ss_pred ------hhhhh---hHHHHhhccceEEEEeeeccccccceeEeeeec---------------------------------
Confidence 01111 00011000 000 000000111111122221
Q ss_pred HHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH---Hh----CCeEEEEecchhHHHHHHHHHh
Q 001302 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQ----GHRVLIYSQFQHMLDLLEDYLT 645 (1104)
Q Consensus 573 ~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~---~~----g~kvLIFsq~~~~ldiL~~~L~ 645 (1104)
.+.|...|.++|.... .. -++++||+.-.++++.|..+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 2223333333333322 11 2489999999999999999999
Q ss_pred hCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 646 ~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
..|+++.-|+|..+..+|.++++.|...... +|++|..++.|||.+.+.+||+||.+-+-..|++|+||.+|-|+.-
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999876555 8999999999999999999999999999999999999999999986
Q ss_pred eEEEE
Q 001302 726 KVMIF 730 (1104)
Q Consensus 726 ~V~Vy 730 (1104)
..+.|
T Consensus 436 ~atsf 440 (482)
T KOG0335|consen 436 RATSF 440 (482)
T ss_pred eeEEE
Confidence 65544
No 71
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.71 E-value=3.2e-16 Score=175.04 Aligned_cols=307 Identities=19% Similarity=0.281 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHH-HHHHhcC----CCC-ceEEEeCcccH-HHHHH---HHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE----RIS-PHLVVAPLSTL-RNWER---EFAT 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~-l~~l~~~----~~~-p~LIV~P~s~l-~qW~~---E~~~ 354 (1104)
+|.+-|...+.=+ ..|..++.+.-+|+|||+..+.- +..++.. +.+ .+|||||..-+ .|-.. ++.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5778888776544 67789999999999999876443 3333332 122 68999997665 44444 4555
Q ss_pred HcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccC---CcceE
Q 001302 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQC 431 (1104)
Q Consensus 355 ~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~---~~w~~ 431 (1104)
+.|...+.+..|...-+...... . ...+++|.|+..+......-.. -.-.+
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 66777777777765544322221 1 2678999999998654332221 12268
Q ss_pred EEEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 432 MIVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 432 vIvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
+|+|||.|+.... --+-+.+..+. ....+|.|||-- ..+..|
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~-----------------------------------~kV~~l 278 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQP-----------------------------------SKVKDL 278 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCc-----------------------------------HHHHHH
Confidence 9999999985432 23334444443 234577777730 111111
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
... .+.| . |-.++.
T Consensus 279 ~~~----~L~~-------------------------------------------------------------d-~~~v~~ 292 (543)
T KOG0342|consen 279 ARG----ALKR-------------------------------------------------------------D-PVFVNV 292 (543)
T ss_pred HHH----hhcC-------------------------------------------------------------C-ceEeec
Confidence 100 0000 0 000111
Q ss_pred CCCCcccchHHHHH---HHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 589 VEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 589 ~~~~~~~~~~~~~~---li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
..+....+.+.+.+ +.....++.+|..+|++.... .||+||+....+...+.+.|....+++..|+|..++..|..
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 11111111111111 111233467777888776543 89999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCe
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~ 726 (1104)
...+|....++ +|++|++++.|+|.+.+|.||-||+|-+|.+|++|+||..|-|-+-.
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999988877 89999999999999999999999999999999999999999776543
No 72
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.4e-15 Score=179.44 Aligned_cols=306 Identities=19% Similarity=0.212 Sum_probs=210.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv 362 (1104)
...||-|.++++.+ ..++++|....||-||++..- |-.++. .|.+|||.| .|++..-.+.+..- ++.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~--Gi~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAA--GIRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHc--Cceee
Confidence 35788999998877 677999999999999998641 222222 469999999 47887777887764 35555
Q ss_pred EEecC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCcc
Q 001302 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 363 ~~~g~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEaH 438 (1104)
.+.++ .+++..+... ......+++..|+|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55444 2233222211 0123578999999999764 455677888999999999
Q ss_pred cccCc-------ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 001302 439 RLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1104)
Q Consensus 439 rlkn~-------~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~ 511 (1104)
-+... -..+......+...-++.||||--+--..|+...|+.-.+..|.+.
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 87543 3345555555666678999998633333333333333222211100
Q ss_pred hhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 512 L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
+. . -|+....+..
T Consensus 200 --------------------------fd--------------------------R---pNi~~~v~~~------------ 212 (590)
T COG0514 200 --------------------------FD--------------------------R---PNLALKVVEK------------ 212 (590)
T ss_pred --------------------------CC--------------------------C---chhhhhhhhc------------
Confidence 00 0 0000000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
.+.-.++.+|.. .....+...||||......+-+...|...|++...++|+++.++|+..-+.|+
T Consensus 213 ------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~ 277 (590)
T COG0514 213 ------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL 277 (590)
T ss_pred ------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh
Confidence 000011112222 12233456899999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 672 ~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.++.. ++++|.|.|.|||=++...||+||.|-+...|.|-+|||+|-|....+.++
T Consensus 278 ~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 278 NDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred cCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 76554 899999999999999999999999999999999999999999987665543
No 73
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.70 E-value=7.2e-16 Score=172.64 Aligned_cols=338 Identities=17% Similarity=0.240 Sum_probs=212.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhc---------CCCC-ceEEEeCcccH-HHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG---------ERIS-PHLVVAPLSTL-RNWEREF 352 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~---------~~~~-p~LIV~P~s~l-~qW~~E~ 352 (1104)
...|.|..++--+ ..+++.|...|+|+|||... |-++..+.. ...+ ..+|++|+.-| .|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 4678888887533 67889999999999999543 223332221 1224 46889997665 5667777
Q ss_pred HHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCc
Q 001302 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIK 428 (1104)
Q Consensus 353 ~~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~ 428 (1104)
.+++- .+.++...|...--.. .| .-...++|+|.|+..+..-.. .|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3567777665432110 00 112468899999988864322 222334
Q ss_pred ceEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHH
Q 001302 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~--s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~ 506 (1104)
-.+||+|||.++-... -...+.|..+ |..|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccch----------hhHH
Confidence 5689999999874322 2222222222 21111 00 11111 1111
Q ss_pred HHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 507 ~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
.+.+.+.. .| -=.......+.|+|.-..+-+..+ ..|...
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~yl----------------------------r~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYL----------------------------RRPVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHh----------------------------hCCeEE
Confidence 11111100 00 001223445666665433333322 223222
Q ss_pred C-CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHH
Q 001302 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 587 ~-~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~ 665 (1104)
. +.........+..-.++..+.|...|..+|... ....+|||.+....+|.|++.|+..||++++++|+-+.++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111122345677877777777764 3579999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|+++|||.+|-|+.-.+.- |+|.
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~ 623 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTP 623 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--Eecc
Confidence 99999987766 89999999999999999999999999999999999999999998766543 4554
No 74
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.70 E-value=5.5e-16 Score=200.38 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=83.9
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCC---------------------------------CcEEEEecCCChHHHHHHHHH
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g---------------------------------~~~~ridG~~~~~~R~~~i~~ 669 (1104)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46799999999999998888886431 114567899999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi 721 (1104)
|.++.- .+|++|.+++.|||+..+|.||+|+++.+...++|++||++|.
T Consensus 323 fK~G~L---rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGEL---RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCc---eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 976543 4899999999999999999999999999999999999999885
No 75
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.69 E-value=6.6e-17 Score=174.14 Aligned_cols=338 Identities=18% Similarity=0.295 Sum_probs=219.4
Q ss_pred CCcccccccCCCCCCC-----C-CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhc--------C
Q 001302 267 KPKEFQQYEHSPEFLS-----G-GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--------E 331 (1104)
Q Consensus 267 ~~~~~~~~~~~P~~~~-----~-~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~--------~ 331 (1104)
+.+.|.....+...+. | ....|.|++|+--+ -.|+..|=..-+|+|||++. +-++...+. .
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~ 243 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFAR 243 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcccc
Confidence 3455665555443332 1 25778999997544 46777776677999999873 223322221 2
Q ss_pred CCCce-EEEeCcccHH-HHHHHHHHH--------cCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccc
Q 001302 332 RISPH-LVVAPLSTLR-NWEREFATW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESK 401 (1104)
Q Consensus 332 ~~~p~-LIV~P~s~l~-qW~~E~~~~--------~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 401 (1104)
+.||+ |||||..-+. |-..-+..+ .|.++.....|.-.-+..+...
T Consensus 244 ~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v------------------------ 299 (610)
T KOG0341|consen 244 GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV------------------------ 299 (610)
T ss_pred CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH------------------------
Confidence 34565 9999976553 333333333 2667777777776666544321
Q ss_pred cccccccEEEccHHHHhhcc--ccccCCcceEEEEcCcccccCc--ccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHH
Q 001302 402 QDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFM 476 (1104)
Q Consensus 402 ~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEaHrlkn~--~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ 476 (1104)
....|+++.|+..+.... ..+.---..++.+|||.|+-.- ...+...+..|+.. ..||.|||-
T Consensus 300 --~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM---------- 367 (610)
T KOG0341|consen 300 --RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM---------- 367 (610)
T ss_pred --hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------
Confidence 235789999998875421 1111122458999999998543 23334444445443 468888883
Q ss_pred HHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHH
Q 001302 477 LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNY 556 (1104)
Q Consensus 477 ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~ 556 (1104)
|.. .+.|.. ..+++ ...|.|.
T Consensus 368 ------P~K-------IQ~FAk----------SALVK-------------------PvtvNVG----------------- 388 (610)
T KOG0341|consen 368 ------PKK-------IQNFAK----------SALVK-------------------PVTVNVG----------------- 388 (610)
T ss_pred ------cHH-------HHHHHH----------hhccc-------------------ceEEecc-----------------
Confidence 000 000100 00111 1122221
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhH
Q 001302 557 QILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1104)
Q Consensus 557 ~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ 636 (1104)
.....-++++.++ ..+..-+|+..|.+.|++ ..-+||||+.-..-
T Consensus 389 -------RAGAAsldViQev-------------------------EyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 389 -------RAGAASLDVIQEV-------------------------EYVKQEAKIVYLLECLQK---TSPPVLIFAEKKAD 433 (610)
T ss_pred -------cccccchhHHHHH-------------------------HHHHhhhhhhhHHHHhcc---CCCceEEEeccccC
Confidence 1111122222221 234455677777666654 56799999999999
Q ss_pred HHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHH
Q 001302 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1104)
Q Consensus 637 ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~g 716 (1104)
.|-|.+||-..|...+.|+|+-..++|..+|+.|..+..+ +|++|++++-|++++...+||+||.+-.-.+|.++||
T Consensus 434 VD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIG 510 (610)
T KOG0341|consen 434 VDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIG 510 (610)
T ss_pred hHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987666 7999999999999999999999999999999999999
Q ss_pred hhHhhCCCCeEEEEEEeeCCCHHHHHH
Q 001302 717 RAHRLGQTNKVMIFRLITRGSIEERMM 743 (1104)
Q Consensus 717 R~hRiGQ~k~V~Vyrlvt~~TvEe~i~ 743 (1104)
|.+|-|.+--.+ .|+-+++-+.-++
T Consensus 511 RTGRsg~~GiAT--TfINK~~~esvLl 535 (610)
T KOG0341|consen 511 RTGRSGKTGIAT--TFINKNQEESVLL 535 (610)
T ss_pred ccCCCCCcceee--eeecccchHHHHH
Confidence 999999775443 4566666554443
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.68 E-value=7.5e-15 Score=169.60 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.5
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCC--CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g--~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI 700 (1104)
.+.++|||++....++.+...|...| +.+..++|.++..+|.++. ...+|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 2348999999999999986 4666
Q ss_pred EECCCCChhhHHHHHHhhH
Q 001302 701 IYDSDWNPHADLQAMARAH 719 (1104)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~h 719 (1104)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 568899999999974
No 77
>COG4889 Predicted helicase [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=177.13 Aligned_cols=395 Identities=17% Similarity=0.182 Sum_probs=204.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc-CCC
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQM 359 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~-p~~ 359 (1104)
...+|||||.++++-....+..+.+|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|.|-.+|...-. -++
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccc
Confidence 3468999999999998888888999999999999999999988887765 488999995 77887655543221 123
Q ss_pred -eEEEEecChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEE
Q 001302 360 -NVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIV 434 (1104)
Q Consensus 360 -~vv~~~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIv 434 (1104)
.+.++..++-+|. .+.-+++-+|.......-. ..........+--||++||+.+..-. ....--.|++||+
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il----~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDIL----SEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHH----HHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEe
Confidence 3344444444443 1222333233221100000 00011122345569999999986543 3344557999999
Q ss_pred cCcccccC------cccHHHHHH--HhcccccEEEEecCCCC------CCHHHHHHHHHhhcCCCCCChHHHHHHHhccc
Q 001302 435 DEGHRLKN------KDSKLFSSL--KQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1104)
Q Consensus 435 DEaHrlkn------~~s~~~~~l--~~l~~~~rllLTgTPlq------N~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~ 500 (1104)
|||||--+ ..|...+.- ..+++..||.|||||-- .+..+=-+.+ ..+.+...|.+.|..+.
T Consensus 311 DEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 311 DEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRLG 385 (1518)
T ss_pred cchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhccc
Confidence 99999633 112111111 12356689999999921 1111100000 01122233444443322
Q ss_pred hHHHHHHHHHHhhHHHHHHhHhhHhhc-CCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCch---------hHHH
Q 001302 501 QEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQ---------ISLI 570 (1104)
Q Consensus 501 ~~~~~~~L~~~L~~~~lRR~k~dv~~~-lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~---------~~l~ 570 (1104)
-.+ .|..+ |...+..++-|.--..+..+ .....+.+.. ....
T Consensus 386 Fge-------------------Av~rdlLTDYKVmvlaVd~~~i~~~~---------~~~~~~~~~~L~~dd~~kIvG~w 437 (1518)
T COG4889 386 FGE-------------------AVERDLLTDYKVMVLAVDKEVIAGVL---------QSVLSGPSKGLALDDVSKIVGCW 437 (1518)
T ss_pred HHH-------------------HHHhhhhccceEEEEEechhhhhhhh---------hhhccCcccccchhhhhhhhhhh
Confidence 221 12222 34445555555422211111 1111111100 1111
Q ss_pred HHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHH-HHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCC
Q 001302 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK-MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW 649 (1104)
Q Consensus 571 ~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~-lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~ 649 (1104)
|-++.--. -..|-.-......+....-++..-+..|.++.-.-. ++.... .++..+ +....+
T Consensus 438 nGlakr~g-~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~---------------~Elk~d-~~nL~i 500 (1518)
T COG4889 438 NGLAKRNG-EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYD---------------EELKKD-FKNLKI 500 (1518)
T ss_pred hhhhhhcc-ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---------------HHHHhc-CCCceE
Confidence 22211000 000000000000011111122222333333221111 111000 111222 222345
Q ss_pred cEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCe-EE
Q 001302 650 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK-VM 728 (1104)
Q Consensus 650 ~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~-V~ 728 (1104)
+..-+||+|...+|......-|.-......+|-..||+++|+++++.|.||+|||--+--..+||.||+-|....|. -+
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGY 580 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGY 580 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccce
Confidence 66778999999999666554444334444578899999999999999999999998777777899999999765543 34
Q ss_pred EEEEe
Q 001302 729 IFRLI 733 (1104)
Q Consensus 729 Vyrlv 733 (1104)
|.--|
T Consensus 581 IILPI 585 (1518)
T COG4889 581 IILPI 585 (1518)
T ss_pred EEEEe
Confidence 44433
No 78
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.67 E-value=6.5e-15 Score=165.67 Aligned_cols=324 Identities=16% Similarity=0.246 Sum_probs=222.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCC-----ceEEEeCcccH-HHHHHHHH---H
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPLSTL-RNWEREFA---T 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~-----p~LIV~P~s~l-~qW~~E~~---~ 354 (1104)
.+...|...+-.. -.|..+|=|.-+|+|||+.. +-+|..|+....+ -.|||.|+.-| .|--.-+. +
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4677888876543 46788888999999999885 5567777765433 67999997555 44444443 3
Q ss_pred HcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccccCCcceE
Q 001302 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQC 431 (1104)
Q Consensus 355 ~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~---~~l~~~~w~~ 431 (1104)
+. ++..-.+.|..+...... .....+|+|+|+..+.... ..|..-...+
T Consensus 167 ~h-~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQm 218 (758)
T KOG0343|consen 167 HH-DFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQM 218 (758)
T ss_pred cc-ccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceE
Confidence 33 667777777766432211 1246789999999997643 3455667789
Q ss_pred EEEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 432 MIVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 432 vIvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
+|+|||.|+-... ..+-..+..+. .+..||.|||+- ++..+|.-|
T Consensus 219 LvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL------------------------------- 266 (758)
T KOG0343|consen 219 LVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL------------------------------- 266 (758)
T ss_pred EEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh-------------------------------
Confidence 9999999986533 33444455554 345699999982 223332211
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEe---ccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~---v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
.|.....+.|. +.-+|. .|+|. |+
T Consensus 267 ------------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q~----y~ 293 (758)
T KOG0343|consen 267 ------------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQS----YV 293 (758)
T ss_pred ------------------hcCCCcEEEEeccccccChh-------------------------------hhhhe----EE
Confidence 11111111111 001111 01110 11
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh--CCCcEEEEecCCChHHH
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAER 663 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~~R 663 (1104)
++.-..|+.+|...|.... ..|.|||...-..+..+...+.. -|++...++|.++...|
T Consensus 294 -----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 294 -----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKR 354 (758)
T ss_pred -----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHH
Confidence 1123347777777777643 45899999988888888877754 39999999999999999
Q ss_pred HHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHH
Q 001302 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1104)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~ 743 (1104)
..+..+|.... -++|.+|..++.||+++++|.||-+|.|-+-..|++|.||.-|.+..-...+|- ..+-||.|+
T Consensus 355 ~ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l 428 (758)
T KOG0343|consen 355 IEVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAML 428 (758)
T ss_pred HHHHHHHHHhc---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHH
Confidence 99999997643 358999999999999999999999999999999999999999998776665442 245568888
Q ss_pred HHHHHHH
Q 001302 744 QMTKKKM 750 (1104)
Q Consensus 744 ~~~~~K~ 750 (1104)
...++|.
T Consensus 429 ~~Lq~k~ 435 (758)
T KOG0343|consen 429 KKLQKKK 435 (758)
T ss_pred HHHHHcC
Confidence 8777764
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.67 E-value=1.3e-14 Score=170.50 Aligned_cols=303 Identities=17% Similarity=0.282 Sum_probs=201.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~--~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p--~ 358 (1104)
.+|...|..+++=+..-.... .+-+|--++|+|||+.|+..+......+ .-....+|+.+| .|-...|.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 578899999998775444433 3468889999999999876666655554 367888999888 678889999996 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
++|...+|+-...+.-...+- ......|+||-|+..+.....+ .+..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~----------------------l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQ----------------------LASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHHH----------------------HhCCCCCEEEEcchhhhcceee---cceeEEEEeccc
Confidence 778888887655432221111 1224678999999888643322 234799999999
Q ss_pred cccCcccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHH
Q 001302 439 RLKNKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~ 516 (1104)
|+.- .....|..-. ..|.|.|||||++-.+. ...|+++.
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDld---------------- 435 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLD---------------- 435 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhcccc----------------
Confidence 9853 3334444433 47999999999855422 11122211
Q ss_pred HHHhHhhHhhcCCCcEEEEEeccCC-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 517 LRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 517 lRR~k~dv~~~lP~k~e~~v~v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
-.++++|||...-+...-+. ..-.++|..+.
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~------------------------------------------- 467 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYERIR------------------------------------------- 467 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHHHH-------------------------------------------
Confidence 12345788763322222222 11122333221
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhH--------HHHHHHHHh--hCCCcEEEEecCCChHHHHH
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~--------ldiL~~~L~--~~g~~~~ridG~~~~~~R~~ 665 (1104)
+-..+|+++.+.|.-+.. +..+...|. ..++++..++|.++++++++
T Consensus 468 -----------------------~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 468 -----------------------EEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred -----------------------HHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 111245555555544321 222223332 23677899999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCC-CChhhHHHHHHhhHhhCCCC
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~-wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
++.+|+++..+ +|+||.+..+|||++.|+.+||.+.+ +--++.-|-.||++|=+...
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 99999876655 89999999999999999999999986 67788889999999955433
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.67 E-value=1.2e-14 Score=187.83 Aligned_cols=293 Identities=16% Similarity=0.197 Sum_probs=184.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCC--C
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~--~ 359 (1104)
|..++|+|..++..+ ..|.++++..+||+|||..++.++..+. .....+|||+|+ .++.|+...+..++.. .
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 356889999887655 5788999999999999975544443332 233589999996 6668999999998754 3
Q ss_pred eEEEEecChh----HHHH-HHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEE
Q 001302 360 NVVMYVGTSQ----ARNI-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1104)
Q Consensus 360 ~vv~~~g~~~----~r~~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIv 434 (1104)
.+.+..|... .+.. .... ....++|+|+|++.+......+....+++|||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l-------------------------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERL-------------------------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 4434443321 1111 1110 12358999999999987666666667999999
Q ss_pred cCcccccCcc--------------cHHHHHHHhcc-------------------------cccEEEEecCCCCCCHHH-H
Q 001302 435 DEGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDE-L 474 (1104)
Q Consensus 435 DEaHrlkn~~--------------s~~~~~l~~l~-------------------------~~~rllLTgTPlqN~~~E-L 474 (1104)
||||++-... ..+..++..+. ....++.|||.-...... +
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l 287 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL 287 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH
Confidence 9999975311 11112222221 123456677752211100 0
Q ss_pred HHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHH
Q 001302 475 FMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTR 554 (1104)
Q Consensus 475 ~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~ 554 (1104)
+ ...+ . +.+.
T Consensus 288 ~---------------------------------~~ll--------------------~--~~v~--------------- 297 (1176)
T PRK09401 288 F---------------------------------RELL--------------------G--FEVG--------------- 297 (1176)
T ss_pred h---------------------------------hccc--------------------e--EEec---------------
Confidence 0 0000 0 0000
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecch
Q 001302 555 NYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ 634 (1104)
Q Consensus 555 ~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~ 634 (1104)
..... ++.+ .|-|.. ...|...|.+++..+ |..+|||++..
T Consensus 298 ---------~~~~~-------~rnI-~~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~ 338 (1176)
T PRK09401 298 ---------SPVFY-------LRNI-VDSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSD 338 (1176)
T ss_pred ---------Ccccc-------cCCc-eEEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEecc
Confidence 00000 0000 011110 002444555566543 56899999987
Q ss_pred hH---HHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEee----cCcccccccccC-CCEEEEECCCC
Q 001302 635 HM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (1104)
Q Consensus 635 ~~---ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Lls----tragg~GINL~~-ad~VIi~D~~w 706 (1104)
.. ++.|.++|...|+++..++|++ ...+++|.++..+ +|++ |..++.|||++. ...||+|+.|-
T Consensus 339 ~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 339 KGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred cChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 77 9999999999999999999998 3346999876554 6777 689999999998 89999999986
Q ss_pred ------ChhhHHHHHHhhHhhC
Q 001302 707 ------NPHADLQAMARAHRLG 722 (1104)
Q Consensus 707 ------Np~~~~Qa~gR~hRiG 722 (1104)
....+..++||...+-
T Consensus 411 ~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 411 FKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred EEEeccccccCHHHHHHHHhhc
Confidence 5667778888887543
No 81
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.67 E-value=1.2e-15 Score=173.87 Aligned_cols=310 Identities=17% Similarity=0.230 Sum_probs=206.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCC-ceEEEeCcccH-HHHHHHHHHHcC---CC
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP---QM 359 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~-p~LIV~P~s~l-~qW~~E~~~~~p---~~ 359 (1104)
..+.|..|+-.. ..+-..|+..-.|+|||+.. ++.+..|-..... -.+||+|+.-+ .|-+..|...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 345677766433 34667899999999999874 4444444433333 67999997655 577777777776 57
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEa 437 (1104)
.+.+|.|...-...... ..+.+|+|-|+..+..- ...+..-..+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~r---------------------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIR---------------------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhhh---------------------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 88888887654322211 23567999999988653 34555567789999999
Q ss_pred ccccCcccH---HHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 438 HRLKNKDSK---LFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 438 Hrlkn~~s~---~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
..|-...|. +...+..+. .+..+..|||=-+ |+.+ .|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~-nLdn---------------------------------~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYPR-NLDN---------------------------------LLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCch-hHHH---------------------------------HHHHHhc
Confidence 999765553 444455554 4567888998421 1111 1222222
Q ss_pred HHHHHHhH-hhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 514 PHLLRRVK-KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 514 ~~~lRR~k-~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
.-++-|.. .|+ .|-....+++.+. ..|
T Consensus 223 dp~lVr~n~~d~--~L~GikQyv~~~~-----------------------------------------s~n--------- 250 (980)
T KOG4284|consen 223 DPALVRFNADDV--QLFGIKQYVVAKC-----------------------------------------SPN--------- 250 (980)
T ss_pred ccceeecccCCc--eeechhheeeecc-----------------------------------------CCc---------
Confidence 11111111 111 1111111111000 000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.+.+. .--|++.|..++..+.- ...||||....-++-+.++|...|+.+..|.|.|+..+|..+++.+.+
T Consensus 251 -----nsvee---mrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 251 -----NSVEE---MRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred -----chHHH---HHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 00000 11245555555555432 257999999999999999999999999999999999999999999965
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
. ...+|+||+..+.||+-..++.||.+|++-+-..|.+|||||+|+|...
T Consensus 321 f---~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 F---RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred c---eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 3 4458999999999999999999999999999999999999999999764
No 82
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=9.7e-15 Score=156.92 Aligned_cols=308 Identities=18% Similarity=0.211 Sum_probs=205.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHH-HHHHHHHHhcCCCC-ceEEEeCcccHHHHHHH-HHHHc--CCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLRNWERE-FATWA--PQM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiq-ai~~l~~l~~~~~~-p~LIV~P~s~l~qW~~E-~~~~~--p~~ 359 (1104)
+..|-|...+-.+ -.|+.||=+.-+|+|||.. ++-++..|.....+ -.||++|..-+.--..| |.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4667888887665 5789999999999999977 45566666666666 56999998766443444 43332 256
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-cccCC-----cceEEE
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLKPI-----KWQCMI 433 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~-~l~~~-----~w~~vI 433 (1104)
++.+++|..+--..-. .-..+.|||++|.+.+..... .+... +-.++|
T Consensus 105 K~~vivGG~d~i~qa~--------------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAA--------------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHhhhhh--------------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 7777887654321111 112467999999998753221 11112 336899
Q ss_pred EcCcccccCccc--HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHH
Q 001302 434 VDEGHRLKNKDS--KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1104)
Q Consensus 434 vDEaHrlkn~~s--~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~ 510 (1104)
+|||.++-+..- .+.-....+. .+--+++|||= .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999865421 1111122222 23557777772 222211110
Q ss_pred HhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCC
Q 001302 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1104)
Q Consensus 511 ~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~ 590 (1104)
.|-.. +.+|..+...
T Consensus 204 -----------------~~i~k------------------------------------------------~~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITK------------------------------------------------SIAFELEVID 218 (442)
T ss_pred -----------------CCccc------------------------------------------------ccceEEeccC
Confidence 00000 0001000000
Q ss_pred CCcc-cchHHHHHHHhhhhHHHHHHHHHHHHHH-hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHH
Q 001302 591 PDIE-DTNESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 591 ~~~~-~~~~~~~~li~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~ 668 (1104)
+... +.-..--.++...+|-..|..+|....+ ....++||.|-+....+|.-.|...++.+..+++.++..+|-+++.
T Consensus 219 ~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 219 GVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred CCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHH
Confidence 0000 0000001123345677788889988877 5668999999999999999999999999999999999999999999
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
+|.++.- -+|++|++++.|+++++++.||+||.|-.|..|++|.||.-|-|..-
T Consensus 299 rFrs~~~---~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 299 RFRSNAA---RILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred HHhhcCc---cEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCc
Confidence 9976544 48999999999999999999999999999999999999998888764
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.66 E-value=4.3e-14 Score=175.46 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
..|.++|.++++.+...+ .+...+|...+|+|||...+..+......+ +.+||++|. ++..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 479999999998885543 456789999999999999887766655543 479999995 67799999999887 46788
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccC
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn 442 (1104)
+++|..........+.- ......+|+|+|+..+.. .--+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCcccc
Confidence 88876544322211100 011356899999876531 122467999999998632
Q ss_pred c--ccHHH-----HHHHh-cccccEEEEecCCC
Q 001302 443 K--DSKLF-----SSLKQ-YSTRHRVLLTGTPL 467 (1104)
Q Consensus 443 ~--~s~~~-----~~l~~-l~~~~rllLTgTPl 467 (1104)
. .+..+ ..++. ......+++||||.
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCC
Confidence 1 11111 11122 23446789999993
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.65 E-value=8.4e-15 Score=183.74 Aligned_cols=331 Identities=19% Similarity=0.212 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHc---C-C
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLST-LRNWEREFATWA---P-Q 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~---p-~ 358 (1104)
.|+.||.++++.+ .+|+++|+...||+|||... +.++..+........|+|-|... .......|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999877 78899999999999999996 55666777776679999999654 456777788776 4 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc------ccccCCcceEE
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLKPIKWQCM 432 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~------~~l~~~~w~~v 432 (1104)
+++..|+|+........- -..+.+|++|+|+|+.... .....-.+.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~~--------------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRAI--------------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHHH--------------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 677888887654322100 1247899999999996521 11111237899
Q ss_pred EEcCcccccCc-ccHHHHHHHhcc--------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHH
Q 001302 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1104)
Q Consensus 433 IvDEaHrlkn~-~s~~~~~l~~l~--------~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~ 503 (1104)
||||+|-.++. .|...-.++.+. ....++.|||- .+..+|...+....-.
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 99999999874 444444444442 23558888884 2333333332211000
Q ss_pred HHHHHHHHhhHHHHHHhHhhHhhc-CCCcEEEEEe-ccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhC
Q 001302 504 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILR-VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1104)
Q Consensus 504 ~~~~L~~~L~~~~lRR~k~dv~~~-lP~k~e~~v~-v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~ 581 (1104)
..+..+ -|....+.+. -+........
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 1111111111 1111000000
Q ss_pred CccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHH----HHHhhCC----CcEEE
Q 001302 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (1104)
Q Consensus 582 hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~----~~L~~~g----~~~~r 653 (1104)
-.-.+...+..++..+...|-++|+|+.+...+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0113455666777778889999999999999988885 3333344 56888
Q ss_pred EecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC-ChhhHHHHHHhhHhhCCCCeEEEEEE
Q 001302 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (1104)
Q Consensus 654 idG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w-Np~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1104)
+.|++..++|..+...|..++.. ++++|.|.-.||++.+.+.||.+-.|- .-..+.|+.||++|-||.-.+ +..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EEE
Confidence 89999999999999999775544 899999999999999999999999888 778999999999999954333 223
Q ss_pred eeCCCHHHHHHHHH
Q 001302 733 ITRGSIEERMMQMT 746 (1104)
Q Consensus 733 vt~~TvEe~i~~~~ 746 (1104)
.-.+-++..+...-
T Consensus 419 ~~~~~~d~yy~~~p 432 (851)
T COG1205 419 LRSDPLDSYYLRHP 432 (851)
T ss_pred eCCCccchhhhhCc
Confidence 33666777665433
No 85
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=1.3e-14 Score=162.93 Aligned_cols=118 Identities=17% Similarity=0.386 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHH--hCCeEEEEecchhHHHHHHHHHh----h------------------CCCcEEEEecCCChHHHHH
Q 001302 610 LQLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYLT----F------------------KKWQYERIDGKVGGAERQI 665 (1104)
Q Consensus 610 l~~L~~lL~~l~~--~g~kvLIFsq~~~~ldiL~~~L~----~------------------~g~~~~ridG~~~~~~R~~ 665 (1104)
+..|..+|..... ...|+|||..-.++++.=.+.|. . .+.++.|++|+|+.++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 3445555554432 24588999887777654333332 1 2457999999999999999
Q ss_pred HHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 666 ~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
+.+.|..... ++|++|++++.||||+.+..||-||+|..+..|+.|+||.-|+|-+-....|
T Consensus 489 ~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 489 VFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred HHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 9999976554 3899999999999999999999999999999999999999999988765544
No 86
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=8.5e-16 Score=151.07 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 608 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
.|+..+..++....+.+.++|||+.....++.+.++|...+.++..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888998887767899999999999999999999988999999999999999999999998765 4589999999
Q ss_pred cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 87
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.2e-14 Score=161.94 Aligned_cols=319 Identities=18% Similarity=0.290 Sum_probs=212.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcC-----CCCce-EEEeCc-ccHHHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGE-----RISPH-LVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~-----~~~p~-LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
+..|.|-.+|--. -.++.+|=..-+|+|||...+. .+.++..+ +.+|+ ||+||. ++..|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 4566666665322 3566677667899999976443 33344332 34576 677885 56688899999885
Q ss_pred --CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEE
Q 001302 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1104)
Q Consensus 357 --p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~v 432 (1104)
-+++++..+|....-..+... .....+||+|++.+.... ....-.+..+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 467888877765544433332 146789999999886432 12222345789
Q ss_pred EEcCcccccCc--ccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 433 IVDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn~--~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
|+|||.|+-.- ..+.......++.+ ..|+.|+|- . ..+..|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~la 419 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLA 419 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHH
Confidence 99999998543 33444445555554 457888873 1 1111111
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
.+++. -|.......|.+-.. . +.+.--+|
T Consensus 420 ------------rd~L~--dpVrvVqg~vgean~------------------------d----ITQ~V~V~--------- 448 (731)
T KOG0339|consen 420 ------------RDILS--DPVRVVQGEVGEANE------------------------D----ITQTVSVC--------- 448 (731)
T ss_pred ------------HHHhc--CCeeEEEeehhcccc------------------------c----hhheeeec---------
Confidence 11110 111111221111000 0 00000011
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
.....|+..|.+-|......| +||||..-....+-|...|...|+++..++|++...+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112346666666666665555 89999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
|...... +|+.|....+|+++....|||+||.--.-..+.|+|||.+|-|.+ -..|-|||....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876665 899999999999999999999999998889999999999999976 6678899876444
No 88
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.7e-14 Score=161.11 Aligned_cols=323 Identities=16% Similarity=0.277 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHH-HHHHHHHHhcCC----CCceEEEeCcccH----HHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGER----ISPHLVVAPLSTL----RNWEREFATW 355 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiq-ai~~l~~l~~~~----~~p~LIV~P~s~l----~qW~~E~~~~ 355 (1104)
.+.|.|...+--. .-|+..+-+..+|+|||.. ++-+|..|+... ..++||+||+.-| .+-.+.+.+|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 4556776655311 2366677788999999977 455666666443 2389999997655 4456667778
Q ss_pred cCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---ccCCcceEE
Q 001302 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCM 432 (1104)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~---l~~~~w~~v 432 (1104)
+ ++.+....|.-+-+..-... ...+||||.|+..+...... |.--...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~L--------------------------Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAVL--------------------------RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHHH--------------------------hhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 7 68888899987766532221 24689999999999765433 333345689
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
|+|||.|+.... ..+...+.... .+..+|.|||- ...+.+|.+|
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------- 378 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------- 378 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------
Confidence 999999986543 23333333322 33458889883 1111221111
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
+|.. ..-|+|.-+.. . ...+..-..++|
T Consensus 379 -----------------SL~k--Pvrifvd~~~~--~-------------------a~~LtQEFiRIR------------ 406 (691)
T KOG0338|consen 379 -----------------SLNK--PVRIFVDPNKD--T-------------------APKLTQEFIRIR------------ 406 (691)
T ss_pred -----------------hcCC--CeEEEeCCccc--c-------------------chhhhHHHheec------------
Confidence 1110 11111111100 0 000000000000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
+.. ..-+-.+|..|+.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..
T Consensus 407 -~~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 407 -PKR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred -ccc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 000 0112233444555544 5689999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCC-CeEEEEEEeeCCCHHHHHHHHH
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMT 746 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~-k~V~Vyrlvt~~TvEe~i~~~~ 746 (1104)
|....-+ +||+|+.++.||++..+.+||+|+.|-....|++|.||.-|-|.. ..| -|+.++ |.+|+.-+
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~i 541 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKEI 541 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHHH
Confidence 9765544 899999999999999999999999999999999999999999865 344 466666 66665433
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1.6e-15 Score=158.35 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~ 359 (1104)
.+|||||.++++-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999998887776654 88999999999999999998888877 99999996 77799999998888655
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc-------------ccC
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~-------------l~~ 426 (1104)
............. ...... ................++++++++.+...... +..
T Consensus 78 ~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD----SKEFIS---------IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEET---------TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc----cccccc---------cccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4443321110000 000000 00000001111234678999999999765322 222
Q ss_pred CcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCC
Q 001302 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1104)
Q Consensus 427 ~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPl 467 (1104)
..+++||+||||++.+... ++.+..+...++|+|||||-
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3678999999999876553 55565578889999999994
No 90
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=2e-14 Score=177.87 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=110.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHc-CCCeEE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWA-PQMNVV 362 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~-p~~~vv 362 (1104)
+|+|.|.+++.-.. ..+.|+|++.+||+|||+.|..++.....++.++++.||| +++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 89999999984332 3389999999999999999987777666666679999999 566777888888443 278999
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIvDEaHrl 440 (1104)
+++|+.+... .....++|+|||||.+-.-... .-....++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 1235789999999998532111 12225689999999999
Q ss_pred cCc-ccH----HHHHHHhccc-ccEEEEecCCCCCCHHHHHH
Q 001302 441 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFM 476 (1104)
Q Consensus 441 kn~-~s~----~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ 476 (1104)
... ... +...++.+.. -..++||||- .|..|+..
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~ 198 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVAD 198 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHH
Confidence 765 221 1112222222 3668999994 34444433
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1.2e-13 Score=169.04 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=112.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+.++.+-+..+.+.|..|||||..+...+.|..+|...|+++..++|.....+|+.+.+.|+.+. ++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEecc
Confidence 467899999999999999999999999999999999999999999999999999999999999997652 799999
Q ss_pred cccccccccCC--------------------------------------CEEEEECCCCChhhHHHHHHhhHhhCCCCeE
Q 001302 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1104)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V 727 (1104)
.+|.|+++.=. =+||.-.-.-|-..|.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999997621 2788888999999999999999999988766
Q ss_pred EEEEEeeCCCHHHHHHH
Q 001302 728 MIFRLITRGSIEERMMQ 744 (1104)
Q Consensus 728 ~Vyrlvt~~TvEe~i~~ 744 (1104)
..|- |+|..++.
T Consensus 581 ~f~l-----SleD~l~~ 592 (896)
T PRK13104 581 RFYL-----SLEDNLMR 592 (896)
T ss_pred EEEE-----EcCcHHHH
Confidence 6552 44555554
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=1.1e-13 Score=165.87 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=75.0
Q ss_pred HHHHHHHHhhC--CCcEEEEecCCChHHH--HHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC---Ch-
Q 001302 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP- 708 (1104)
Q Consensus 637 ldiL~~~L~~~--g~~~~ridG~~~~~~R--~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w---Np- 708 (1104)
.+.+++.|... +.++.++|+.++...+ +++++.|.++..+ +|++|...+.|+|++.++.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777654 7899999999887665 8999999875544 899999999999999999998887763 23
Q ss_pred --------hhHHHHHHhhHhhCCCCeEEEEE
Q 001302 709 --------HADLQAMARAHRLGQTNKVMIFR 731 (1104)
Q Consensus 709 --------~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1104)
+.+.|+.||++|-+....|.|..
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 67899999999988777776543
No 93
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=2.9e-14 Score=154.10 Aligned_cols=325 Identities=19% Similarity=0.284 Sum_probs=200.9
Q ss_pred CCcccccccCCCCCCCCC------CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CCCC-ceEE
Q 001302 267 KPKEFQQYEHSPEFLSGG------SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLV 338 (1104)
Q Consensus 267 ~~~~~~~~~~~P~~~~~~------~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~~~-p~LI 338 (1104)
..+.|..+.-.|..+.|. .....|..++-.| +....+|.|-....|+|||......+..-.. .... -.+.
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iC 165 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCIC 165 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCcee
Confidence 456788888888877652 4555777777654 3356778888889999999754322222111 1122 3455
Q ss_pred EeCcc-cHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHH
Q 001302 339 VAPLS-TLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (1104)
Q Consensus 339 V~P~s-~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l 417 (1104)
++|.. +..|-..-+.+...-..+..-+.-++++. .+.....-+|+|-|..++
T Consensus 166 LaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---------------------------~rG~~i~eqIviGTPGtv 218 (477)
T KOG0332|consen 166 LAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---------------------------KRGNKLTEQIVIGTPGTV 218 (477)
T ss_pred eCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---------------------------ccCCcchhheeeCCCccH
Confidence 69964 44555554544432112221111111100 011234568999999998
Q ss_pred hhccccccCC---cceEEEEcCcccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChH
Q 001302 418 NLDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1104)
Q Consensus 418 ~~~~~~l~~~---~w~~vIvDEaHrlkn~~s---~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~ 490 (1104)
......|+.+ ...+.|+|||..+-+... ......+.+. ....++.|||-. | ...
T Consensus 219 ~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~-----e--------------~V~ 279 (477)
T KOG0332|consen 219 LDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV-----E--------------KVA 279 (477)
T ss_pred HHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH-----H--------------HHH
Confidence 7654444333 457899999998866542 2223333344 456678888831 0 000
Q ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 001302 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLI 570 (1104)
Q Consensus 491 ~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~ 570 (1104)
.| .. +-+|.-...++.-+- ..+
T Consensus 280 ~F-----------------------a~--------kivpn~n~i~Lk~ee--------------------------l~L- 301 (477)
T KOG0332|consen 280 AF-----------------------AL--------KIVPNANVIILKREE--------------------------LAL- 301 (477)
T ss_pred HH-----------------------HH--------HhcCCCceeeeehhh--------------------------ccc-
Confidence 11 11 112222222111000 000
Q ss_pred HHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCc
Q 001302 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ 650 (1104)
Q Consensus 571 ~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~ 650 (1104)
..+.+|--.|.| ...|+++|..| -.+..-| ..||||+-..++..|...|...|+.
T Consensus 302 ~~IkQlyv~C~~-----------------------~~~K~~~l~~l-yg~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~ 356 (477)
T KOG0332|consen 302 DNIKQLYVLCAC-----------------------RDDKYQALVNL-YGLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQ 356 (477)
T ss_pred cchhhheeeccc-----------------------hhhHHHHHHHH-Hhhhhhh-heEEEEeehhhHHHHHHHHHhcCce
Confidence 001111111211 23466666663 3333334 6799999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC------ChhhHHHHHHhhHhhCCC
Q 001302 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 651 ~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w------Np~~~~Qa~gR~hRiGQ~ 724 (1104)
+..++|.+..++|..+|++|..+.+. +|++|.+.++||+.+.++.||.||.+- .|..|++|+||.+|.|.+
T Consensus 357 V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 357 VSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred eEEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 99999999999999999999876654 899999999999999999999999874 688999999999999965
Q ss_pred C
Q 001302 725 N 725 (1104)
Q Consensus 725 k 725 (1104)
.
T Consensus 434 G 434 (477)
T KOG0332|consen 434 G 434 (477)
T ss_pred c
Confidence 3
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.58 E-value=7.9e-14 Score=180.47 Aligned_cols=313 Identities=14% Similarity=0.166 Sum_probs=176.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCC--e
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~--~ 360 (1104)
..+.|+|..++..+ ..|.+.++..++|+|||..++.++..+... ...+|||+|+ .+..|+.+.|..++... .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 35788999987655 578899999999999998666555544333 3489999996 55588999999887542 2
Q ss_pred E---EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCc
Q 001302 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 361 v---v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEa 437 (1104)
+ .+|+|...........+. .....++|+|+|+..+......+.. .++++|||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 346675433221111000 0113589999999999876555554 7899999999
Q ss_pred ccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 438 Hrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
|++-......-..|..+ |- ..+++-.++..+..... . ...+.+.++...++
T Consensus 209 D~~L~~~k~vd~il~ll---------GF----~~e~i~~il~~~~~~~~---~---------~~~~~~~~~~~~~~---- 259 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLL---------GF----SEELIEKAWKLIRLRLK---L---------YRALHAKKRLELLE---- 259 (1171)
T ss_pred HhhhhccccHHHHHHHc---------CC----CHHHHHHHHHHhhhccc---c---------chHHHHHHHHHHHH----
Confidence 99855321111111110 10 00011111111111110 0 00112222222221
Q ss_pred HHhHhhHhhcCCCcEE-EEEeccCC--HHH-H-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 518 RRVKKDVMKELPPKKE-LILRVELS--SKQ-K-EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e-~~v~v~ls--~~Q-~-~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
.+|.+.. ..+....| +.. + .+++.++ .-..+... ..++. ..|.|..
T Consensus 260 ---------~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-------~~~v~~~~------~~~r~-I~~~~~~------ 310 (1171)
T TIGR01054 260 ---------AIPGKKRGCLIVSSATGRPRGKRAKLFRELL-------GFEVGGGS------DTLRN-VVDVYVE------ 310 (1171)
T ss_pred ---------hhhhccCcEEEEEeCCCCccccHHHHccccc-------ceEecCcc------ccccc-eEEEEEe------
Confidence 1121111 11112222 111 0 1111110 00000000 00111 0111110
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecch---hHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~---~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
...+...|.++|..+ |.++|||++.. ..++.|..+|...|+++..++|.++ +.+++.
T Consensus 311 -------------~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~ 370 (1171)
T TIGR01054 311 -------------DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEK 370 (1171)
T ss_pred -------------cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHH
Confidence 111223445555543 67899999988 8999999999999999999999986 478999
Q ss_pred HccCCCCceEEEee----cCcccccccccC-CCEEEEECCC
Q 001302 670 FNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD 705 (1104)
Q Consensus 670 Fn~~~~~~~v~Lls----tragg~GINL~~-ad~VIi~D~~ 705 (1104)
|.++... +|++ |..+++|||++. .+.||+||.|
T Consensus 371 Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 371 FAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9776544 6777 588999999998 7999999997
No 95
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=8.1e-14 Score=151.59 Aligned_cols=313 Identities=19% Similarity=0.307 Sum_probs=206.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH--HHHHH-----hcCCCC-ceEEEeCcccH-HHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA--FLASL-----FGERIS-PHLVVAPLSTL-RNWEREFATW 355 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~--~l~~l-----~~~~~~-p~LIV~P~s~l-~qW~~E~~~~ 355 (1104)
+..|.|-++ |- ..-+|..+|-...+|.|||+.-+. ++... +....+ ..||++|..-| .|-.-|..+.
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 466677665 42 235788999999999999976532 11111 112334 57888996554 5566666554
Q ss_pred c-CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEE
Q 001302 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1104)
Q Consensus 356 ~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~v 432 (1104)
. -.+..++++|...-...+.+. ..+.+++|.|+..+... ...+.--...+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 345555555554433333332 24678999999888642 223333345689
Q ss_pred EEcCcccccC--cccHHHHHHHhcccccEEEE-ecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHH
Q 001302 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1104)
Q Consensus 433 IvDEaHrlkn--~~s~~~~~l~~l~~~~rllL-TgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~ 509 (1104)
|+|||.++.. ...++.+.|..+...+...| |||-- +.
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP-----------------------------------~~----- 411 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWP-----------------------------------EG----- 411 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCc-----------------------------------hH-----
Confidence 9999999864 45688899999987766554 56520 11
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEecc---CCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVE---LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~---ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
+||+....++ ...+++|. |.. +|.
T Consensus 412 -------VrrLa~sY~K-----ep~~v~vGsLdL~a--------------------------------------~~s--- 438 (629)
T KOG0336|consen 412 -------VRRLAQSYLK-----EPMIVYVGSLDLVA--------------------------------------VKS--- 438 (629)
T ss_pred -------HHHHHHHhhh-----CceEEEecccceee--------------------------------------eee---
Confidence 1222211111 11122221 110 000
Q ss_pred CCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHH
Q 001302 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~ 666 (1104)
+...+ ..-..+.|+..+..++..+ ....|||||+....++|-|..-|...|+....++|.-...+|+.+
T Consensus 439 --VkQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 439 --VKQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA 507 (629)
T ss_pred --eeeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH
Confidence 00000 0011344555555555443 457899999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 667 i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
++.|. ++.+.+|++|+.++.||+++...+|+.||.+-|-..|.+++||.+|.|.+-.-. -|++.+
T Consensus 508 l~~~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si--s~lt~~ 572 (629)
T KOG0336|consen 508 LEDFK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI--SFLTRN 572 (629)
T ss_pred HHhhh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE--EEEehh
Confidence 99995 556679999999999999999999999999999999999999999999764432 345544
No 96
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=6.1e-15 Score=155.88 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=199.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCC-ceEEEeCcccH----HHHHHHHHHHcCCC
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL----RNWEREFATWAPQM 359 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~-p~LIV~P~s~l----~qW~~E~~~~~p~~ 359 (1104)
..|.|.+++--. -.|++.+.-.--|+|||-.- |-.+..+-..... ..+|+||..-+ +|-..++.++. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 444555544211 23444444456799999663 3334333222222 67999996443 67788888888 68
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEa 437 (1104)
.+.+-+|....|..|.. -....|++|.|+..+..-. ..-.--+..++|+|||
T Consensus 183 ~vmvttGGT~lrDDI~R--------------------------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMR--------------------------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceee--------------------------ecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 88888888766654322 1245789999998875421 1111224568999999
Q ss_pred ccccCccc--HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 438 HRLKNKDS--KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 438 Hrlkn~~s--~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
..+.+..- ..-+.+..+. .+..++.|||-- . ....|
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP-~------------------tVk~F---------------------- 275 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFP-L------------------TVKGF---------------------- 275 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccc-h------------------hHHHH----------------------
Confidence 99876432 2333444443 345577788730 0 11122
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
|-|.+++-. ++.+.-+|+..
T Consensus 276 -m~~~l~kPy--------~INLM~eLtl~--------------------------------------------------- 295 (459)
T KOG0326|consen 276 -MDRHLKKPY--------EINLMEELTLK--------------------------------------------------- 295 (459)
T ss_pred -HHHhccCcc--------eeehhhhhhhc---------------------------------------------------
Confidence 222211110 11111111110
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
.-..+-..+..+.|+..|.-|+.+|.- ...||||+.+...++|+......||+...++..|..+.|......|.++.
T Consensus 296 -GvtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 296 -GVTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred -chhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 000112334566788888888887743 36899999999999999999999999999999999999999999997654
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCC
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~ 724 (1104)
- ..|++|+..-.||+.+++++||.||.+-|+..|+.++||.+|.|--
T Consensus 373 c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 373 C---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred c---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 3 3799999999999999999999999999999999999999999954
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.9e-13 Score=166.64 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|...|.+.+......|..|||||..+...+.|...|...|+++..++|.....++.-+...+. ++ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ---RG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC---Cc--eEEEEec
Confidence 456888999999888889999999999999999999999999999999999987555555544443 23 2799999
Q ss_pred ccccccccc---CCC-----EEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 686 agg~GINL~---~ad-----~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.+|.|+++. .+. +||.++.+-|...+.|++||++|.|..-....|
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 999999995 566 999999999999999999999999988665433
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=2.2e-13 Score=170.48 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=92.0
Q ss_pred hCCeEEEEecchhHHHHHHHHHhh---CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
.+..+|||......++.+.+.|.. .++.+..++|+++.++|..+++.|..+ ...+|++|..+..||+++.+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G---~rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG---RRKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC---CeEEEEecchHhhcccccCceEE
Confidence 356899999999999999988876 478999999999999999999999543 34589999999999999999999
Q ss_pred EEECCC----CChhh--------------HHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 700 IIYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 700 Ii~D~~----wNp~~--------------~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
|.++.. +||.. ..||.||++|. ++-.+|+|+++..
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 998864 56654 67888888886 5778899998753
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=4.2e-13 Score=164.35 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..|.+.+..+...|..|||||..+...+.|...|...|+++..++|. ..+|.+.|..|..... .++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecc
Confidence 4568999999999888899999999999999999999999999999999996 6789999999965333 4899999
Q ss_pred cccccccccCC--------------------------------------CEEEEECCCCChhhHHHHHHhhHhhCCCCeE
Q 001302 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1104)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V 727 (1104)
.+|.|+|+.-. =+||.-..+-|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 2788888899999999999999999998776
Q ss_pred EEEEEeeCCCHHHHHHHH
Q 001302 728 MIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 728 ~Vyrlvt~~TvEe~i~~~ 745 (1104)
..|- |+|..++.+
T Consensus 567 ~f~l-----SleD~l~~~ 579 (830)
T PRK12904 567 RFYL-----SLEDDLMRI 579 (830)
T ss_pred eEEE-----EcCcHHHHh
Confidence 6552 445555543
No 100
>PRK14701 reverse gyrase; Provisional
Probab=99.56 E-value=2.4e-13 Score=179.37 Aligned_cols=336 Identities=15% Similarity=0.219 Sum_probs=185.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC----C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p----~ 358 (1104)
.++++.|..++..+ ..+++.++..+||+|||...+.++..+ .......|||+|+ .++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 35789999998665 567899999999999998433222222 2222379999996 566888899988764 3
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
.++..++|...........+. .....++|+|+|.+.+......+....++++||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566777777544322111100 0123588999999988754443333568999999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHH-HHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM-LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~-ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++-.. ++.... .|-|-|- ..|+.. .+..+......+. ....+.+..|...+.
T Consensus 211 ~ml~~-~knid~--------~L~llGF-----~~e~~~~~~~il~~~~~~~~---------~~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKA-SKNIDR--------SLQLLGF-----YEEIIEKAWKIIYLKKQGNI---------EDAMEKREILNKEIE---- 263 (1638)
T ss_pred ecccc-ccccch--------hhhcCCC-----hHHHHHHHHHhhhccccccc---------chhhhhhhhhhhhhh----
Confidence 98431 110000 0000010 011110 1111110000000 000122333333221
Q ss_pred HHhHhhHhhcCCCcEEEEE--eccCCHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 518 RRVKKDVMKELPPKKELIL--RVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v--~v~ls~~Q~~~Y~~il~~~~~~l~~~-~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
.+|......+ ...+++.. ....++.. .+.-. +..... ++.+ .|.|..
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~--~~~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~-------- 313 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKG--DRVKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLN-------- 313 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchh--HHHHHhhc---CeEEEecCCCCC-------CCCc-EEEEEE--------
Confidence 1233322222 33333211 00011000 00000 000000 0000 011100
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhH---HHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~---ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
.....| ..|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 314 ---------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 314 ---------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ---------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 001112 3455555543 6789999987654 589999999999999999984 899999998
Q ss_pred cCCCCceEEEeecC----cccccccccC-CCEEEEECCCC---ChhhHHH-------------HHHhhHhhCCC
Q 001302 672 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 724 (1104)
Q Consensus 672 ~~~~~~~v~Llstr----agg~GINL~~-ad~VIi~D~~w---Np~~~~Q-------------a~gR~hRiGQ~ 724 (1104)
++... +|++|. .++.|||++. ...||+||.|- |...+.| .+||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 76654 788884 6789999998 99999999987 5554444 45888888764
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.3e-12 Score=136.38 Aligned_cols=313 Identities=19% Similarity=0.208 Sum_probs=205.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCC
Q 001302 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1104)
Q Consensus 280 ~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~ 358 (1104)
..++|+|.|+|..+-+-+...+.+....|+-.-+|.|||=+....+...++.+ +.+.|..| ..++..-..-+..-+++
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhcc
Confidence 34679999999999999999999999999999999999998887777776664 58999999 46666666677777778
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
..+...+|+.+..- ...=||-||++.+.- . -.||++||||+.
T Consensus 171 ~~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF-k-----~aFD~liIDEVD 212 (441)
T COG4098 171 CDIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF-K-----QAFDLLIIDEVD 212 (441)
T ss_pred CCeeeEecCCchhc--------------------------------cccEEEEehHHHHHH-H-----hhccEEEEeccc
Confidence 88999998876421 112255666666642 2 247999999999
Q ss_pred cccC-cccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH-
Q 001302 439 RLKN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP- 514 (1104)
Q Consensus 439 rlkn-~~s~~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~- 514 (1104)
.+-- .+-.+..+++.-. ....+.|||||- .+|- .. -++.-+.+
T Consensus 213 AFP~~~d~~L~~Av~~ark~~g~~IylTATp~----k~l~------------------r~-----------~~~g~~~~~ 259 (441)
T COG4098 213 AFPFSDDQSLQYAVKKARKKEGATIYLTATPT----KKLE------------------RK-----------ILKGNLRIL 259 (441)
T ss_pred cccccCCHHHHHHHHHhhcccCceEEEecCCh----HHHH------------------HH-----------hhhCCeeEe
Confidence 8732 2223444444432 346899999992 0100 00 00000000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
.+-+|... +.||-....++ . ..-
T Consensus 260 klp~RfH~---~pLpvPkf~w~--~--~~~-------------------------------------------------- 282 (441)
T COG4098 260 KLPARFHG---KPLPVPKFVWI--G--NWN-------------------------------------------------- 282 (441)
T ss_pred ecchhhcC---CCCCCCceEEe--c--cHH--------------------------------------------------
Confidence 00111111 12221111111 0 000
Q ss_pred cchHHHHHHHhhhhHHH-HHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecC-CChHHHHHHHHHHcc
Q 001302 595 DTNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNA 672 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~-~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~-~~~~~R~~~i~~Fn~ 672 (1104)
+.+ .-+|+. .|...|++....|..+|||...+.+++-+...|+. ++++..+..- .....|.+.+..|.+
T Consensus 283 ------k~l--~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~ 353 (441)
T COG4098 283 ------KKL--QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD 353 (441)
T ss_pred ------HHh--hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc
Confidence 000 011222 35667777788899999999999999999888853 3444443221 224678999999976
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCC--CChhhHHHHHHhhHhhCCCCeEEEEEEe
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~--wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1104)
+. +-+|++|..+..|+.++..|++|+=.-. ++-+..+|.-||++|--....-.|+.|-
T Consensus 354 G~---~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 354 GK---ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred Cc---eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 44 4589999999999999999999986555 8899999999999996654433444443
No 102
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=5.7e-13 Score=166.72 Aligned_cols=357 Identities=16% Similarity=0.138 Sum_probs=190.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcc-cHHHHHHHHHH----Hc
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS-TLRNWEREFAT----WA 356 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s-~l~qW~~E~~~----~~ 356 (1104)
+..++|+|....+-. ..++..||-.+||.|||-.|+.++..+...+ ...++++.|.- +..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999764321 3456689999999999999999888776543 45889999964 44555555543 44
Q ss_pred CCCeEEEEecChhHHHHHHHhhhc-CCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-----cccC--Cc
Q 001302 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLKP--IK 428 (1104)
Q Consensus 357 p~~~vv~~~g~~~~r~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~-----~l~~--~~ 428 (1104)
++.++...||............-. .........................-.+|+|+|.+.+....- .++. +.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888865432111110000 000000000000000000011112336899999988763211 1111 12
Q ss_pred ceEEEEcCcccccCcccH-HHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHH
Q 001302 429 WQCMIVDEGHRLKNKDSK-LFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~-~~~~l~~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~ 505 (1104)
=.+|||||+|-+-...+. +...|..+. ....++||||+-..-..+|...+..-.+ .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~--~------------------- 498 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP--V------------------- 498 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc--c-------------------
Confidence 248999999988433222 233333322 2458999999732111111111000000 0
Q ss_pred HHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 506 ~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
......|-... + +. ... ..+ .+..|+..
T Consensus 499 -----------------~~~~~YPlvt~----~--~~---------------------~~~-------~~~-~~~~~~~~ 526 (878)
T PRK09694 499 -----------------ELSSAYPLITW----R--GV---------------------NGA-------QRF-DLSAHPEQ 526 (878)
T ss_pred -----------------ccccccccccc----c--cc---------------------ccc-------eee-eccccccc
Confidence 00000000000 0 00 000 000 00001000
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCC---CcEEEEecCCChHH
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~~ 662 (1104)
... ........ ..+-.....-.++..++.. ...|.++|||++.+..+..+.+.|...+ .++..++|.++..+
T Consensus 527 ~~~--~~~v~v~~--~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPA--RFTIQLEP--ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCc--ceEEEEEe--eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 000 00000000 0000000112233333333 3568899999999999999999998664 67999999999999
Q ss_pred H----HHHHHHHccCCC-CceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCC
Q 001302 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 663 R----~~~i~~Fn~~~~-~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~ 724 (1104)
| +++++.|...+. ....+|++|.+...|||+ .+|.+|....+ ...++|++||+||.|.+
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 467888943222 223589999999999999 57988886655 56899999999999874
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=153.97 Aligned_cols=314 Identities=19% Similarity=0.270 Sum_probs=206.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCcccHH-HHHHHHHHHcCC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQ--M 359 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~l~-qW~~E~~~~~p~--~ 359 (1104)
.+|.|-|.-+|. ...-.|.+-++...+++|||+++ +|-+-.++.. .+++|.+||+-.+. |=.++|..-+.. +
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-g~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-GKKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhC-CCeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 469999999874 33468999999999999999986 5555555543 35999999986664 455667654433 4
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---cccccCCcceEEEEcC
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~---~~~l~~~~w~~vIvDE 436 (1104)
.+.+-.|...-+. .+ .. .......+.||++-||+-+.-. ...+. +...|||||
T Consensus 291 kvairVG~srIk~----~~----------------~p--v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKT----RE----------------EP--VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhcc----cC----------------Cc--cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 4445555433221 00 00 0112346789999999987432 22333 456899999
Q ss_pred cccccCc--ccHH---HHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHH
Q 001302 437 GHRLKNK--DSKL---FSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1104)
Q Consensus 437 aHrlkn~--~s~~---~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~ 510 (1104)
.|.+... ...+ ...|+.+. ....+.||||- .|+.||...|..-...
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV~-------------------------- 398 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLVL-------------------------- 398 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeEe--------------------------
Confidence 9999763 2222 23333333 35679999995 5556655433310000
Q ss_pred HhhHHHHHHhHhhHhhcCC-CcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 511 MLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 511 ~L~~~~lRR~k~dv~~~lP-~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
-..-| |...+.+.+.=
T Consensus 399 --------------y~~RPVplErHlvf~~~------------------------------------------------- 415 (830)
T COG1202 399 --------------YDERPVPLERHLVFARN------------------------------------------------- 415 (830)
T ss_pred --------------ecCCCCChhHeeeeecC-------------------------------------------------
Confidence 00000 11222222211
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHH----HhC--CeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLK----EQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~----~~g--~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R 663 (1104)
.+.|..++.+|.+.-. ..| ..+|||+...+-...|+++|..+|++..-++++++..+|
T Consensus 416 ----------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 416 ----------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred ----------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 1223333333332211 112 369999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----ECCCC-ChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D~~w-Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
+.+-..|.+.. ...+++|-|+|.|+++++ ++||+ +-.+| +|+.+.|..|||+|.|=...-.||-++-.|
T Consensus 480 k~vE~~F~~q~---l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 480 KSVERAFAAQE---LAAVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHhcCC---cceEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999997644 347899999999999996 44544 34455 999999999999999988888888888654
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1e-12 Score=160.59 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|...+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888888889999999999999999999999999999999999999999999999999999997543 799999
Q ss_pred cccccccccCC-------------------------------------CEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 686 agg~GINL~~a-------------------------------------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
.+|.|+|+.-. =+||.-...-|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999997622 27899899999999999999999999876655
Q ss_pred EE
Q 001302 729 IF 730 (1104)
Q Consensus 729 Vy 730 (1104)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 105
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.52 E-value=2.3e-13 Score=153.50 Aligned_cols=361 Identities=18% Similarity=0.265 Sum_probs=215.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHH-HHHHHHHHhcC-------------CCC-ceEEEeCcc-cHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGE-------------RIS-PHLVVAPLS-TLRN 347 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiq-ai~~l~~l~~~-------------~~~-p~LIV~P~s-~l~q 347 (1104)
|-.+|-+++++-- -.........+=|.|+|+|||+. +|-++..+.+. ... -.|||+|+. +..|
T Consensus 200 gFs~Pt~IQsl~l-p~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 200 GFSRPTEIQSLVL-PAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred CCCCCccchhhcc-cHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 3455555554321 11112235677799999999987 46666644321 122 269999964 4577
Q ss_pred HHHHHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----cc
Q 001302 348 WEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DS 421 (1104)
Q Consensus 348 W~~E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~----~~ 421 (1104)
-.+.|...+ +++.+..+.|.-......+-. ....+|||.|+..+-. +.
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhh
Confidence 777776655 578888899987655433221 1267899999987743 22
Q ss_pred ccccCC-cceEEEEcCccccc--CcccHHHHHHHhcc------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHH
Q 001302 422 ASLKPI-KWQCMIVDEGHRLK--NKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1104)
Q Consensus 422 ~~l~~~-~w~~vIvDEaHrlk--n~~s~~~~~l~~l~------~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F 492 (1104)
..+..+ +..++|||||.|+- +.-..+.+.|..+. -+..+..|||-- +..+. .. .
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~---~~---~-- 395 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQ---PL---S-- 395 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcC---hh---H--
Confidence 234433 45799999999984 43344555555554 123488888841 00000 00 0
Q ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 001302 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1104)
Q Consensus 493 ~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1104)
...-........-..+..+++ .+.-.=+| ..+.+++.+.-. ..
T Consensus 396 ~~~k~~~k~~~~~~kiq~Lmk---------~ig~~~kp-----kiiD~t~q~~ta-----------------------~~ 438 (731)
T KOG0347|consen 396 SSRKKKDKEDELNAKIQHLMK---------KIGFRGKP-----KIIDLTPQSATA-----------------------ST 438 (731)
T ss_pred HhhhccchhhhhhHHHHHHHH---------HhCccCCC-----eeEecCcchhHH-----------------------HH
Confidence 000000000011111111111 11111122 223444432211 11
Q ss_pred HHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEE
Q 001302 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1104)
Q Consensus 573 ~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 652 (1104)
+.+-+--| .| + +.+.. |.-+| ..--.|.||||+.++.+..|.-+|...+++..
T Consensus 439 l~Es~I~C-~~-~----eKD~y------------------lyYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 439 LTESLIEC-PP-L----EKDLY------------------LYYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHhhcC-Cc-c----cccee------------------EEEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 22222223 11 0 00000 00000 01134899999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEE
Q 001302 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1104)
Q Consensus 653 ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1104)
.++.+|...+|-+.+++|....++ +||+|++++.||+++.+++||+|..|-....|++|-||.-|-+..- |.|. |
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-L 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-E
Confidence 999999999999999999876664 8999999999999999999999999999999999999999976432 2221 2
Q ss_pred eeC---------------------CCHHHHHHHHHHHHHHHHHHHh
Q 001302 733 ITR---------------------GSIEERMMQMTKKKMVLEHLVV 757 (1104)
Q Consensus 733 vt~---------------------~TvEe~i~~~~~~K~~l~~~v~ 757 (1104)
+.. -.|++.|+...+.+-.|++.+.
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 211 1356777777777777766653
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.51 E-value=3.5e-12 Score=158.11 Aligned_cols=370 Identities=17% Similarity=0.232 Sum_probs=236.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHH-HHHHHHHHHcCCCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~-qW~~E~~~~~p~~~ 360 (1104)
.+-.|-|+.+++-+..=+..+. .-+|+-++|.|||=.|+=.+-.....+ +-+.|+||+.+|. |-.+.|..-+.++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 4677899999998876666555 368999999999988754333222222 5889999998884 44555654444555
Q ss_pred EEE-----EecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001302 361 VVM-----YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1104)
Q Consensus 361 vv~-----~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvD 435 (1104)
|.+ |.+.+..+..+... ...+.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 544 33444444444332 2368899999999998765432 23699999
Q ss_pred CcccccCcccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 436 EaHrlkn~~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
|=||+.= +.-..|+.++++ +.|-|||||++-.+.= -.. .+..|
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M-------sm~--------------------GiRdl------ 767 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNM-------SLS--------------------GIRDL------ 767 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHH-------HHh--------------------cchhh------
Confidence 9999853 334567777655 8899999998655221 000 00000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
..-.-||.....|.--..+..-...+
T Consensus 768 ---------SvI~TPP~~R~pV~T~V~~~d~~~ir--------------------------------------------- 793 (1139)
T COG1197 768 ---------SVIATPPEDRLPVKTFVSEYDDLLIR--------------------------------------------- 793 (1139)
T ss_pred ---------hhccCCCCCCcceEEEEecCChHHHH---------------------------------------------
Confidence 01134665555444332221111111
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--CCcEEEEecCCChHHHHHHHHHHcc
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.-++++ ..+|.+|-...+.+..+.-+...|... ..++...+|.|+..+-+.++..|.+
T Consensus 794 -------------------eAI~RE-l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 794 -------------------EAILRE-LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred -------------------HHHHHH-HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 112223 235667777788888888888887653 4568889999999999999999987
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCC-CChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHH
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~-wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~ 751 (1104)
+..+ +|+||.....|||+++|||+||-+.| +--++.-|-.||++|- .+..+-|-|+-.+ ..+-+.+.+++.
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHHH
Confidence 6555 89999999999999999999999887 6788889999999995 4566777676542 234455555555
Q ss_pred HHHHHh--ccccccCCCHHHHHHHHHhchhhhhcccccCCCCcccCCCC------HHHHHHHhc
Q 001302 752 LEHLVV--GRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYD------DAAIDRLLD 807 (1104)
Q Consensus 752 l~~~v~--g~~~~~~~~~~el~~~l~~ga~~l~~~~~~~~~~~~~~~~~------~~~id~~l~ 807 (1104)
..+..- |..- +=-+.||==-|+-.|++.+.. |.-..+.|+ +++|.++..
T Consensus 926 aI~~~~~LGaGf-----~lA~~DLeIRGaGNlLG~eQS--G~I~~VGf~LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 926 AIASFTELGAGF-----KLAMHDLEIRGAGNLLGEEQS--GHIESVGFDLYMEMLEEAIAALKG 982 (1139)
T ss_pred HHHhhhhcCchH-----HHHhcchhccccccccCcccc--CchheecHHHHHHHHHHHHHHHhc
Confidence 444332 2211 112333444577777766542 222233332 556666555
No 107
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.51 E-value=9.4e-13 Score=165.26 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=92.0
Q ss_pred hCCeEEEEecchhHHHHHHHHHhh---CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
.+..+|||......++.+.+.|.. .++.+..++|+++..+|+.++..|.. +...+|++|..+..||+++.+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 457899999999999999999976 57889999999999999999988854 344589999999999999999999
Q ss_pred EEECCC----CChh--------------hHHHHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 700 Ii~D~~----wNp~--------------~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE 342 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh
Confidence 996654 3333 577888888876 488899999876543
No 108
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=2.7e-14 Score=127.43 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.8
Q ss_pred HHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh
Q 001302 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi 721 (1104)
.+|+..|+++..++|.++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999998766 3899999999999999999999999999999999999999998
Q ss_pred C
Q 001302 722 G 722 (1104)
Q Consensus 722 G 722 (1104)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 109
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.1e-12 Score=150.50 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHH-hhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
-+|+..+..++.... .-.+|||.|.......|-..| ...++.+..|+|..+..+|...+++|..+ .+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g---~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG---KIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc---CeeEEEehh
Confidence 467777777776542 358999999999999999999 78899999999999999999999999764 345899999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCe
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~ 726 (1104)
..+.||++.+++.||+||.+-.-..++.++||.+|-|+.-.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 99999999999999999999999999999999999998743
No 110
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.46 E-value=1.7e-12 Score=157.98 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra 686 (1104)
+.|+.-|..||....+ ..++|||++....+|.|.+-|...||....++|..+..+|...|..|.++.. .+|++|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehhh
Confidence 5588888888888776 5599999999999999999999999999999999999999999999976554 49999999
Q ss_pred ccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 687 gg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
.+.||+......||+||.+--...+..|.||.+|-|.+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999888888999999999988776 45556655
No 111
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.45 E-value=1.4e-12 Score=143.82 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC-
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 685 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr- 685 (1104)
-.|+.++.-||+--.= ..|.|||.+.++..-.|.-+|+.-|++.|.+.|.++..-|.-+|++||.+- +-++|+|+
T Consensus 252 ~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccC
Confidence 3467777666653332 349999999999999999999999999999999999999999999998743 34677776
Q ss_pred -------------------------c---------ccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 686 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 686 -------------------------a---------gg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
+ .+.||+++.++.||.||.|-++..|++|+||..|-|.+-.+.-|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 25799999999999999999999999999999998876665544
No 112
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.45 E-value=1.1e-12 Score=137.79 Aligned_cols=156 Identities=28% Similarity=0.341 Sum_probs=110.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeC-cccHHHHHHHHHHHcCC-
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQ- 358 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~-~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~qW~~E~~~~~p~- 358 (1104)
..+++|+|.+++..+. .. .++++..++|+|||..++.++....... ..++||++| .++..+|..++..+.+.
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3679999999998773 34 8899999999999998777776665543 469999999 56778999999998865
Q ss_pred --CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEE
Q 001302 359 --MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1104)
Q Consensus 359 --~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIv 434 (1104)
.....+.+... ...+... .....+++++||+.+...... +....++++|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 33444444332 2222111 012238999999998775544 44557889999
Q ss_pred cCcccccC-cccHHH-HHHHhc-ccccEEEEecCCCC
Q 001302 435 DEGHRLKN-KDSKLF-SSLKQY-STRHRVLLTGTPLQ 468 (1104)
Q Consensus 435 DEaHrlkn-~~s~~~-~~l~~l-~~~~rllLTgTPlq 468 (1104)
||+|.+.+ ...... ..+..+ ...+++++||||..
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999986 333333 333444 46788999999963
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.43 E-value=7.3e-11 Score=145.12 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra 686 (1104)
.+++..|.+-|......|.++|||+....+++.|.++|...|+++..++|.++..+|.+++..|..+ .+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G---~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG---EFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC---CceEEEEcCh
Confidence 4577777777777788899999999999999999999999999999999999999999999999653 3568999999
Q ss_pred ccccccccCCCEEEEECC-----CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCC--HHHHHHH
Q 001302 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQ 744 (1104)
Q Consensus 687 gg~GINL~~ad~VIi~D~-----~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T--vEe~i~~ 744 (1104)
+++|++++.++.||++|. +-+...++|++||++|.. .. .++.++...| +...|.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHH
Confidence 999999999999999994 557889999999999973 33 3444554433 4444444
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.2e-11 Score=149.54 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..|.+.+..+...|..|||||+++...+.|..+|...|+++..|++ ...+|++.|..|.... ..++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~---g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK---GAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC---CeEEEecc
Confidence 456999999999999899999999999999999999999999999999998 5779999999995433 34899999
Q ss_pred cccccccccCCC--------EEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
.+|.|+++.-.+ +||.++.+-+...|.|++||++|.|..-....
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF 706 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE
Confidence 999999998443 34888889999999999999999998765543
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=1.7e-12 Score=128.20 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=99.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeCcccHH-HHHHHHHHHcC-CCeEEEEecChhHHHHHHHhhhcC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l~-qW~~E~~~~~p-~~~vv~~~g~~~~r~~i~~~e~~~ 381 (1104)
.++++..++|+|||.+++.++..+... ..+++||++|...+. +|...+..+.. ...+.++++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999888765 456999999977665 45666777774 4677777776544432211
Q ss_pred CCCchhhhccccCccccccccccccccEEEccHHHHhhccccc--cCCcceEEEEcCcccccCcccHHH---HHHHhccc
Q 001302 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1104)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l--~~~~w~~vIvDEaHrlkn~~s~~~---~~l~~l~~ 456 (1104)
.....+++++||+.+....... ....|++||+||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654332 344789999999999988765543 33444567
Q ss_pred ccEEEEecCC
Q 001302 457 RHRVLLTGTP 466 (1104)
Q Consensus 457 ~~rllLTgTP 466 (1104)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 116
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=2.3e-11 Score=146.67 Aligned_cols=309 Identities=18% Similarity=0.250 Sum_probs=179.8
Q ss_pred HhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC---------CCCceEEEeCc-ccH----HHHHHHHHHHcCCCeEEEE
Q 001302 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMY 364 (1104)
Q Consensus 299 ~~~~~~~~~ILademGlGKTiqai~~l~~l~~~---------~~~p~LIV~P~-s~l----~qW~~E~~~~~p~~~vv~~ 364 (1104)
..|..+.|+|++.++|+|||..|...|..++++ +.-+++.|+|. ++. .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 356789999999999999999986666555542 11289999995 443 3455555444 6889999
Q ss_pred ecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh-------ccccccCCcceEEEEcCc
Q 001302 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 365 ~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~-------~~~~l~~~~w~~vIvDEa 437 (1104)
+|+...-+. ...+.+|+|||+|..-- +...+. ...+|||||+
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998654221 13567899999987521 111122 2468999999
Q ss_pred ccccCcccH-----HHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 438 HRLKNKDSK-----LFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 438 Hrlkn~~s~-----~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
|-|....+. ..+.++.. +.-+.++||||- -|+.| +..||..+.....-.|...|...
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eD---vA~fL~vn~~~glfsFd~~yRPv--------- 313 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYED---VARFLRVNPYAGLFSFDQRYRPV--------- 313 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHH---HHHHhcCCCccceeeeccccccc---------
Confidence 999876543 33333222 223568999994 23344 44555555444444444444211
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCC--HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls--~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
| .....+-+.-. ..|.+..
T Consensus 314 --------------------p-L~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 314 --------------------P-LTQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred --------------------c-eeeeEEeeecccchhhhhhH--------------------------------------
Confidence 0 00111111000 0000000
Q ss_pred CCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhH----HHHHHHHHhhCCCc------------
Q 001302 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM----LDLLEDYLTFKKWQ------------ 650 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~----ldiL~~~L~~~g~~------------ 650 (1104)
..+++..+.+ ...+||.|+||+..... +..|.+.-...|..
T Consensus 335 -------------------d~~~~~kv~e----~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYDKVVE----FLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHHHHHH----HHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 0111222222 23468888888876543 22232222222222
Q ss_pred -------EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhh----------HHH
Q 001302 651 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 713 (1104)
Q Consensus 651 -------~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~----------~~Q 713 (1104)
...-+.++...+|+..-+.|..+.-. +|++|...+.|+||++--.+|-=..-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 22345567778899999999765443 8999999999999997555554344455544 689
Q ss_pred HHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 714 AMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 714 a~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
.+|||+|.+=.+.-..+.+.+.++++
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHH
Confidence 99999998766555555555544443
No 117
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.37 E-value=7.5e-12 Score=139.02 Aligned_cols=216 Identities=25% Similarity=0.293 Sum_probs=132.8
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHHHHh---cCC--c----------hhHHHHHHHHHHHHhCCccccC-CCCCCccc
Q 001302 532 KELILRVELSSKQKEYYKAILTRNYQILTR---RGG--A----------QISLINVVMELRKLCCHPYMLE-GVEPDIED 595 (1104)
Q Consensus 532 ~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---~~~--~----------~~~l~~~~~~Lrk~~~hP~l~~-~~~~~~~~ 595 (1104)
.++.++++|+..|+++|+.++.-.+..+.+ ... . ...+...+.+|+.+|+||+|+- ...+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 368899999999999999998877655432 111 1 1234456778999999999863 33333334
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHH-----HHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHH---
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l-----~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i--- 667 (1104)
..+....+...|||+.+|..+|..+ ...+.++||.++..+++|+|+.+|...++.|.|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4555678889999999999999999 66678999999999999999999999999999999986544433322
Q ss_pred ---------HHHccCCC-CceEEEeecCcccc----cccccCCCEEEEECCCCChhhHHHHHHhh-HhhCCCCeEEEEEE
Q 001302 668 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRL 732 (1104)
Q Consensus 668 ---------~~Fn~~~~-~~~v~Llstragg~----GINL~~ad~VIi~D~~wNp~~~~Qa~gR~-hRiGQ~k~V~Vyrl 732 (1104)
...+...+ ...++|++|.-... .++-...|.||-||+.+++....-..-|. +|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 11112222 23445555554433 13344679999999999998865444444 4433 88999999
Q ss_pred eeCCCHHHHHHHHHHHH
Q 001302 733 ITRGSIEERMMQMTKKK 749 (1104)
Q Consensus 733 vt~~TvEe~i~~~~~~K 749 (1104)
|..+|+|.-++......
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887766543
No 118
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=1.6e-12 Score=116.44 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.4
Q ss_pred HHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhh
Q 001302 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1104)
Q Consensus 639 iL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~ 718 (1104)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred HhhC
Q 001302 719 HRLG 722 (1104)
Q Consensus 719 hRiG 722 (1104)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 119
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.36 E-value=1.3e-11 Score=154.20 Aligned_cols=313 Identities=15% Similarity=0.141 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeCc-ccHHHHHHHHHHHcCCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~v 361 (1104)
...||-|+++|+-. ..|..+++-+.+|.||++.- -|-.- ..+-+|||.|+ ||+.--..-+.. .++..
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCY-----QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCY-----QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEe-----eccccccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 46999999999743 68899999999999999753 11010 12478999995 666544444422 36777
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccc---cCC----cceEEEE
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL---KPI----KWQCMIV 434 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l---~~~----~w~~vIv 434 (1104)
..+.+..........+.... .+....+++..|+|.+......+ ... .-.++||
T Consensus 332 ~~L~s~q~~~~~~~i~q~l~--------------------~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKLA--------------------NGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred eeccccccHHHHHHHHHHHh--------------------CCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 77777766654333222111 12246789999999997643322 111 2578999
Q ss_pred cCcccccCc-------ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHH
Q 001302 435 DEGHRLKNK-------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1104)
Q Consensus 435 DEaHrlkn~-------~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~ 507 (1104)
||||-.... ..++......+..--.+.||||--..--.++...|++-+|..|.+.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------ 453 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------ 453 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------------------
Confidence 999987542 2233333333344467899999754555555555555544432211
Q ss_pred HHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccC
Q 001302 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1104)
Q Consensus 508 L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~ 587 (1104)
..++.-.+-|....+ ...+..++...+.
T Consensus 454 -------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~~--------- 481 (941)
T KOG0351|consen 454 -------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESKL--------- 481 (941)
T ss_pred -------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhhh---------
Confidence 122222333322221 0111111111111
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHH
Q 001302 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1104)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i 667 (1104)
...+.-.||||....+.+.+...|...|++..-++++++..+|+.+-
T Consensus 482 ---------------------------------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 482 ---------------------------------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred ---------------------------------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 23456789999999999999999999999999999999999999999
Q ss_pred HHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEe
Q 001302 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1104)
Q Consensus 668 ~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1104)
..|..+. +.++++|=|.|.|||-+++..||+|..+-+-.-|-|..|||+|-|+...+..|+=.
T Consensus 529 ~~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 529 KAWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 9998755 55899999999999999999999999999999999999999999999887766433
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.35 E-value=4.2e-11 Score=153.63 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=88.5
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCC---CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+.++..+ +. ..+|++|..+..||+++++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~--rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG--RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC--ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885443 22 2479999999999999999999
Q ss_pred EEECCC----C--------------ChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHH
Q 001302 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1104)
Q Consensus 700 Ii~D~~----w--------------Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe 740 (1104)
|-++.. + +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 2 3357899999999987 677899998765543
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.35 E-value=6.6e-10 Score=137.77 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra 686 (1104)
.+++..|...|......|.++|||+.....++.|.++|...|+++..++|.++..+|..++..|..+ .+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g---~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG---EFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC---CceEEEEeCH
Confidence 4567777777777788899999999999999999999999999999999999999999999999653 3458999999
Q ss_pred ccccccccCCCEEEEECCC-----CChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 687 gg~GINL~~ad~VIi~D~~-----wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999974 5889999999999994 3 3345555653
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=2.3e-10 Score=140.42 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... +.-..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457889999889999999999999999999999999999999999999998743 333344543 33333 4799999
Q ss_pred cccccccccCC--------CEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHH
Q 001302 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 686 agg~GINL~~a--------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~ 745 (1104)
.+|.|.++.-. =+||.-..+-|...+.|..||++|.|..-....|- |+|..++.+
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 99999887533 27888899999999999999999999886655442 445555543
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=2.6e-10 Score=136.57 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..+.+-+..+.+.|..|||.+..+..-+.|...|...|+++..+..... +.-..+|.+= +..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEec
Confidence 456888898989899999999999999999999999999999999999998744 3334555543 3333 4799999
Q ss_pred cccccccccCC---------------CEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHH
Q 001302 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 686 agg~GINL~~a---------------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~ 745 (1104)
.+|.|.|+.-. =+||....+-|-..+.|..||++|.|..-....|- |+|..++.+
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~ 553 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAA 553 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHh
Confidence 99999887632 37898889999999999999999999887666552 345555543
No 124
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.31 E-value=1.3e-10 Score=148.51 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.5
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCc---EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~---~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
....+|||+.....++.+.+.|...+++ +.-++|+++.++|..+++.+ +...+|++|..++.||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999887765 56789999999999886542 234589999999999999999999
Q ss_pred EEEC---------------CCCCh---hhHHHHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 700 Ii~D---------------~~wNp---~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9874 22223 5688888888887 467788999876543
No 125
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.1e-11 Score=133.76 Aligned_cols=311 Identities=18% Similarity=0.231 Sum_probs=200.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC--CCceEEEeCcccHHHHH-HHHHHHcCCC--e
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWE-REFATWAPQM--N 360 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~--~~p~LIV~P~s~l~qW~-~E~~~~~p~~--~ 360 (1104)
+..-|..|+-= .-+|.+++.-...|+|||.+-...+....... ..-+||++|...+.+-. .-...+.+.. +
T Consensus 49 PSaIQqraI~p----~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAILP----CIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred chHHHhccccc----cccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 44566666532 25788999999999999998444333333222 23689999988875533 3344455444 4
Q ss_pred EEEEecChhHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCc
Q 001302 361 VVMYVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 361 vv~~~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEa 437 (1104)
+....|...-+ +.. .......+|++.|...+... ...|..-...+.|+|||
T Consensus 125 v~~~igg~~~~~~~~--------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQ--------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred eeeecCcccchhhhh--------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 44444433222 110 01124568999998665432 23555556789999999
Q ss_pred ccccCc--ccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 438 HRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 438 Hrlkn~--~s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
..+... .-+++..+..+..+ ..+++|||-. .++.- +-+.
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p----~~vl~----------------------------------vt~~ 220 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP----SDVLE----------------------------------VTKK 220 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCc----HHHHH----------------------------------HHHH
Confidence 887654 44666777777654 5578888831 11000 0000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
|+ . ....+.+.-...+.+.. + +-|..-
T Consensus 221 f~-------------~-~pv~i~vkk~~ltl~gi----------------------------k----q~~i~v------- 247 (397)
T KOG0327|consen 221 FM-------------R-EPVRILVKKDELTLEGI----------------------------K----QFYINV------- 247 (397)
T ss_pred hc-------------c-CceEEEecchhhhhhhe----------------------------e----eeeeec-------
Confidence 00 0 00011111000000000 0 000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
....|+..|..+.. .-...+||++..+-++.|.+.|..+|+....++|.+...+|..++..|+.+.
T Consensus 248 ----------~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs 313 (397)
T KOG0327|consen 248 ----------EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS 313 (397)
T ss_pred ----------cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC
Confidence 00116777777776 3346899999999999999999999999999999999999999999998876
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
+. +|++|...+.||+++.++.||+||.|-|+.+|+.++||++|.|-+- ....++++.
T Consensus 314 sr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 314 SR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 65 7999999999999999999999999999999999999999999653 233556554
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.30 E-value=1.3e-10 Score=145.95 Aligned_cols=356 Identities=16% Similarity=0.141 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC---CCceEEEeCcccH-HHHHHHHHHHcCCC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL-RNWEREFATWAPQM 359 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l-~qW~~E~~~~~p~~ 359 (1104)
...+++|..+++.....+..+..++|..+||.|||..++..+.+..... ...++.|.|..++ .+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999998877766666899999999999999998888887763 4488888886554 56777788877555
Q ss_pred eEEEE--ecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccE-EEccHHHHhhc-----cccccCCcceE
Q 001302 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDV-LLTSYEMINLD-----SASLKPIKWQC 431 (1104)
Q Consensus 360 ~vv~~--~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV-vitsye~l~~~-----~~~l~~~~w~~ 431 (1104)
.+..- +|.....-.. ..+. . . ......... ....-+.+ ++++.+.+... ...+..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~~-~~~~---~------~-~~~~~~~ds-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLLL-EPDQ---D------I-LLTLTTNDS-YKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhhh-cccc---c------c-ceeEEeccc-ccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 5544432211 1000 0 0 000000000 01112223 33333333311 01133345578
Q ss_pred EEEcCcccccCc-ccHHHHHHH-hcc--cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHH
Q 001302 432 MIVDEGHRLKNK-DSKLFSSLK-QYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1104)
Q Consensus 432 vIvDEaHrlkn~-~s~~~~~l~-~l~--~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~ 507 (1104)
+|+||+|-+--. ......++. .+. ....|++|||+- ..|.+
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~------------- 386 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKE------------- 386 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHH-------------
Confidence 999999988655 222222222 222 457899999971 01111
Q ss_pred HHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccC
Q 001302 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1104)
Q Consensus 508 L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~ 587 (1104)
.|...+..... . ..+.. .+ ..++.|.+..
T Consensus 387 ---~l~~~~~~~~~-~---~~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 387 ---KLKKALGKGRE-V---VENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred ---HHHHHHhcccc-e---ecccc-----cc---------------------------------------cccccccccc
Confidence 11111000000 0 00000 00 0001111110
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHH
Q 001302 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1104)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i 667 (1104)
....... .... ..+...+..-...|.+|+|-++.+..+--+...|+..+.+++.+++......|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 112222333345689999999999999999999998888899999999999999998
Q ss_pred HHHccC-CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhC--CCCeEEEEEEeeCCCHHHHHHH
Q 001302 668 DRFNAK-NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMMQ 744 (1104)
Q Consensus 668 ~~Fn~~-~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiG--Q~k~V~Vyrlvt~~TvEe~i~~ 744 (1104)
+....- ..+...++|+|.+...|+|+. .|.+|- |+. -....+||.||++|-| ....+.||...-......+.++
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 866531 111123899999999999998 566663 221 2456889999999999 5677888888877777877777
Q ss_pred HHHHHHHH
Q 001302 745 MTKKKMVL 752 (1104)
Q Consensus 745 ~~~~K~~l 752 (1104)
....++.-
T Consensus 561 ~~~~~~~~ 568 (733)
T COG1203 561 KLEKKLKS 568 (733)
T ss_pred cchhhhcc
Confidence 66665543
No 127
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.29 E-value=1.6e-11 Score=134.98 Aligned_cols=313 Identities=18% Similarity=0.233 Sum_probs=208.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCC-CC-ceEEEeCcccH-HH---HHHHHHHHcC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-IS-PHLVVAPLSTL-RN---WEREFATWAP 357 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~-~~-p~LIV~P~s~l-~q---W~~E~~~~~p 357 (1104)
+..|.|...++-+ -.+...+-..=+|.|||..- |-.+..|.... .+ +.||+.|+.-| .| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4667777776544 44555666667999999875 34455555432 23 89999997555 34 445555555
Q ss_pred CCeEE-EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEE
Q 001302 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1104)
Q Consensus 358 ~~~vv-~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIv 434 (1104)
+++.. .+.|++.+.+.+.- ....|||+.|...+..-.. .|.--...|||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 55555 55666555443211 1357899988887754322 133334578999
Q ss_pred cCcccccC--cccHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHH
Q 001302 435 DEGHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1104)
Q Consensus 435 DEaHrlkn--~~s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~ 511 (1104)
|||.+|-. ..-++.+.+..+.. ...+++|||- .+.+. +|.. .-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv------------------~fak---------------aG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLV------------------DFAK---------------AG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhH------------------HHHH---------------cc
Confidence 99999853 45677788888864 4679999994 11111 1100 00
Q ss_pred hhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCC
Q 001302 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1104)
Q Consensus 512 L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~ 591 (1104)
-.||.... +.|+ .
T Consensus 217 ---------------l~~p~lVR-ldve---------------------------------------------------t 229 (529)
T KOG0337|consen 217 ---------------LVPPVLVR-LDVE---------------------------------------------------T 229 (529)
T ss_pred ---------------CCCCceEE-eehh---------------------------------------------------h
Confidence 01111111 1110 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
.+.+........+....|...|..++..... .++.+||+.-...++++...|...|+...-+.|++....|..-+.+|+
T Consensus 230 kise~lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 230 KISELLKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred hcchhhhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 0000000011122345577777777766443 458999999999999999999999999999999999999999999997
Q ss_pred cCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 672 ~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
..... +|++|+.+..|++.+-.+.||.||.+-.+..+..+.||+.|-|.+- ..|-||+..
T Consensus 309 ~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 309 GRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred CCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 65544 8999999999999999999999999999999999999999988653 456666654
No 128
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.21 E-value=1.9e-10 Score=122.51 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=105.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcC--CC-CceEEEeCc-ccHHHHHHHHHHHcC--
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE--RI-SPHLVVAPL-STLRNWEREFATWAP-- 357 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~--~~-~p~LIV~P~-s~l~qW~~E~~~~~p-- 357 (1104)
.+++||.++++-+ .++.++++..++|.|||++. +.++..+... .. ..+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999766 34889999999999999885 4455555554 23 379999995 677889998888864
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEc
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvD 435 (1104)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 56777888876554322221 125689999988765421 11222356899999
Q ss_pred CcccccCcc-c-HHHHHHHhcc-cccEEEEecCCC
Q 001302 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (1104)
Q Consensus 436 EaHrlkn~~-s-~~~~~l~~l~-~~~rllLTgTPl 467 (1104)
|+|.+.+.. . .+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 1 2222333344 356799999985
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1.2e-09 Score=134.00 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
....|...+.+-+..+.+.|..|||-+.++..-+.|..+|...|+++..+..... +.-..+|. +++..+ .+-|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 3567999999999999999999999999999999999999999999998888643 33344554 344444 469999
Q ss_pred Cccccccccc-------------------------------------CCCEEEEECCCCChhhHHHHHHhhHhhCCCCeE
Q 001302 685 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1104)
Q Consensus 685 ragg~GINL~-------------------------------------~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V 727 (1104)
..+|.|-|+. ..=+||.-..+-|-..+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 223789889999999999999999999988666
Q ss_pred EEE
Q 001302 728 MIF 730 (1104)
Q Consensus 728 ~Vy 730 (1104)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 555
No 130
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.20 E-value=1.2e-10 Score=119.96 Aligned_cols=155 Identities=20% Similarity=0.269 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh-cCCCCceEEEeCc-ccHHHHHHHHHHHcC--CCeEEE
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~-~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~vv~ 363 (1104)
|+|.+++.-+ ..+.+.++..++|.|||..++..+.... +.....+||++|. +++.+-..++..++. +.++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998766 3678899999999999999876555544 4433599999995 677888888988874 468888
Q ss_pred EecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcCccccc
Q 001302 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1104)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIvDEaHrlk 441 (1104)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999765432 112236899999999997
Q ss_pred Cc--ccHHHHHHHhc---ccccEEEEecCCCCCCHH
Q 001302 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1104)
Q Consensus 442 n~--~s~~~~~l~~l---~~~~rllLTgTPlqN~~~ 472 (1104)
.. .......+..+ .....+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333333333 2356899999996 4443
No 131
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.15 E-value=4e-12 Score=120.31 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=56.6
Q ss_pred CccccCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCcccChhhhHHHHHHhhhccc
Q 001302 1024 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1024 ~~~~~~~i~k~~~k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
|++++..|++|+.|++++. ....+|++||+.|+ +|+ .+|.++||++++++.||++|||||||++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~~---~~~~~l~~Kv~~~~-~P~-----~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~ 69 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKRK---EQQEALRKKVEQYK-NPW-----QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGY 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCC-S-SHH-----HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcc-CCH-----HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCC
Confidence 3567888999998887774 77899999999999 887 689999998889999999999999999999999
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.15 E-value=2.7e-08 Score=113.39 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=108.3
Q ss_pred HHHHHHHH---HHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccc
Q 001302 613 LDKMMVKL---KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1104)
Q Consensus 613 L~~lL~~l---~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~ 689 (1104)
+++|+.++ .+.|.||||-+--.+|.+-|.+||...|+++..++..+..-+|..+|.....+. |-+|+....+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~---~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE---FDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC---ccEEEeehhhhc
Confidence 44555444 457899999999999999999999999999999999999999999999997644 458999999999
Q ss_pred cccccCCCEEEEECCCC-----ChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHH
Q 001302 690 GINLATADTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1104)
Q Consensus 690 GINL~~ad~VIi~D~~w-----Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~ 748 (1104)
||+|+.++.|.|+|-|- +-...+|.||||-|--.. .|..|-=...+|+++.|-+...+
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 99999999999999984 788899999999995433 45444444445677766655443
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.13 E-value=1.9e-09 Score=131.96 Aligned_cols=72 Identities=29% Similarity=0.481 Sum_probs=60.7
Q ss_pred CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE-----ECCC---C---ChhhHHHHHH
Q 001302 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1104)
Q Consensus 648 g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi-----~D~~---w---Np~~~~Qa~g 716 (1104)
.|.+..-+.+++..+|...-+.|.++. +-+|+||...+-|+||++ +|||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~---iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGH---IQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCc---eeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 467888899999999999999996543 458999999999999996 78877 6664 4 7899999999
Q ss_pred hhHhhCC
Q 001302 717 RAHRLGQ 723 (1104)
Q Consensus 717 R~hRiGQ 723 (1104)
||+|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=1.4e-08 Score=123.61 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..+.+-+..+.+.|..|||.+..+...+.|..+|...|+++..++.... +.-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 467888888888888899999999999999999999999999999999998743 33333443 444444 4799999
Q ss_pred cccccccccCCC--------EEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.+|.|.++.-.. +||....+-|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999988766555
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.09 E-value=1.9e-09 Score=138.32 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHH-HHH---HHc
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER-EFA---TWA 356 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~-E~~---~~~ 356 (1104)
.|.+.||.|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+.. ..|+.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999988888777788888999999999999987665544433 3359999999655 567643 554 333
Q ss_pred C-CCeEEEEecCh
Q 001302 357 P-QMNVVMYVGTS 368 (1104)
Q Consensus 357 p-~~~vv~~~g~~ 368 (1104)
+ ++++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47777777754
No 136
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.09 E-value=5.3e-09 Score=113.22 Aligned_cols=298 Identities=17% Similarity=0.148 Sum_probs=187.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+.||.|++++|-. ..+..++|...+|-||++.-- +-.|.. .|-.|||||+ |++..-.-.++...-+....
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 36899999999865 678899999999999997531 111212 3578999995 66666566666654322222
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc-------cccCCcceEEEEc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCMIVD 435 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~-------~l~~~~w~~vIvD 435 (1104)
--..++..-. ..+.++ ......|..+.+|++.+.+... .+..-.|.+|-||
T Consensus 165 nansske~~k-~v~~~i---------------------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAK-RVEAAI---------------------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHH-HHHHHH---------------------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 1112222111 111111 1133578889899988865432 3444467899999
Q ss_pred CcccccC-------cccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 436 EaHrlkn-------~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
|+|-... ..+.+...-+.++....++||||.-.+-+.+...+|..-..
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------------------------- 277 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------------------------- 277 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-------------------------
Confidence 9987642 22333333345667788999999865554444333221000
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
| ..|--.|.|-|.-.
T Consensus 278 ------~-----------------------------------------------------------tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 278 ------F-----------------------------------------------------------TFRAGFNRPNLKYE 292 (695)
T ss_pred ------h-----------------------------------------------------------eeecccCCCCceeE
Confidence 0 00111122222211
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHH
Q 001302 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~ 668 (1104)
+...+...++- ..-+.+++..- -.|..-||||-...-.+-+...|...|+...-++..+.+++|.-+-+
T Consensus 293 v~qkp~n~dd~----------~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDC----------IEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHH----------HHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 11111111111 11122222221 24778899999989999999999999999999999999999988877
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHH
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~ 715 (1104)
.+-+ +.+-+++.|-|.|.||+-+.+..||+-..+-+-.+|-||-
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHH
Confidence 7744 4456899999999999999999999999999999999954
No 137
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.07 E-value=1e-08 Score=113.16 Aligned_cols=319 Identities=16% Similarity=0.176 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEEEEec
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv~~~g 366 (1104)
|.|..+++-+. ..+..+.+.+++|.||++.-- |-.|+.. +-++||.|+ .++..-.+.+.+.- +++-.+..
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~--gITIV~SPLiALIkDQiDHL~~LK--Vp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHG--GITIVISPLIALIKDQIDHLKRLK--VPCESLNS 93 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhC--CeEEEehHHHHHHHHHHHHHHhcC--CchhHhcc
Confidence 67888887653 567789999999999997531 1222233 367888885 45555555555432 11111111
Q ss_pred --ChhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc-----cccc-cCCcceEEEEcCc
Q 001302 367 --TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-----SASL-KPIKWQCMIVDEG 437 (1104)
Q Consensus 367 --~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~-----~~~l-~~~~w~~vIvDEa 437 (1104)
+..+|. ++.+.+ .......++..|+|+...+ ...| ..-...+++||||
T Consensus 94 KlSt~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred hhhHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 112222 222221 1223445677788877543 1112 2234579999999
Q ss_pred ccccCc------ccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH-HhccchHHHHHHHH
Q 001302 438 HRLKNK------DSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRLH 509 (1104)
Q Consensus 438 Hrlkn~------~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~-f~~~~~~~~~~~L~ 509 (1104)
|-.... +-...-+|++. ..--.+.||||--..--+|+|..|++-.|-..-.-..|... |.++
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~---------- 220 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN---------- 220 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH----------
Confidence 987432 11222233332 23356889999877777888888887766432222222211 1000
Q ss_pred HHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC
Q 001302 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 510 ~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
.|+.+++..+..| ..--+++...|--+...
T Consensus 221 -------------------------------------~~K~~I~D~~~~L-------------aDF~~~~LG~~~~~~~~ 250 (641)
T KOG0352|consen 221 -------------------------------------HMKSFITDCLTVL-------------ADFSSSNLGKHEKASQN 250 (641)
T ss_pred -------------------------------------HHHHHhhhHhHhH-------------HHHHHHhcCChhhhhcC
Confidence 1111111111111 11122232222111110
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
. +....--||||......+.+.-.|..+|++..-++.+....+|..+-+.
T Consensus 251 ~------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 251 K------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred C------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHH
Confidence 0 0011246999999999999999999999999999999999999999999
Q ss_pred HccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEE
Q 001302 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1104)
Q Consensus 670 Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1104)
+..++.+ +++.|-+.|.|++=+++..||+.+++-|-.-|-|--||++|-|-..-+..|+
T Consensus 301 WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 301 WMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 9876665 7899999999999999999999999999999999999999999877777764
No 138
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.91 E-value=1.3e-08 Score=111.12 Aligned_cols=233 Identities=20% Similarity=0.233 Sum_probs=142.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhc------CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHH
Q 001302 280 FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREF 352 (1104)
Q Consensus 280 ~~~~~~L~~yQ~~gv~wl~~~~~------~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~ 352 (1104)
.+..+.|-+-|+++|-+....+. .+.+.+|.|.+|.||.-|+.++|..-+..+..+.+.|.. ..+...=.+.+
T Consensus 32 ~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 32 VIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHH
Confidence 45568899999999988866555 467789999999999999999998877766665565555 55555555666
Q ss_pred HHHcC-CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc-------ccc
Q 001302 353 ATWAP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-------ASL 424 (1104)
Q Consensus 353 ~~~~p-~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~-------~~l 424 (1104)
..... .+.+..+..- +.+ .....+..|+++||.++.... ..|
T Consensus 112 ~DIG~~~i~v~~l~~~------------------------~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKF------------------------KYG------DIIRLKEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred HHhCCCcccceechhh------------------------ccC------cCCCCCCCccchhHHHHHhHHhccCCccchH
Confidence 54331 1111111110 000 001246679999999997653 223
Q ss_pred cCC-cc------eEEEEcCcccccCccc------HHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhh---c-C
Q 001302 425 KPI-KW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL---D-A 483 (1104)
Q Consensus 425 ~~~-~w------~~vIvDEaHrlkn~~s------~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~ll~fL---~-p 483 (1104)
..+ .| .+||+||||+.||..+ +...++..+ ...+.+..|||.... +..|- ++.-| . -
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~g 239 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPG 239 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCC
Confidence 222 34 4899999999999755 555555544 345688999998632 22221 11112 1 1
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHHHh--hHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHH
Q 001302 484 GKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1104)
Q Consensus 484 ~~~~~~~~F~~~f~~~~~~~~~~~L~~~L--~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~ 550 (1104)
..|.+..+|.+....-. ....+-+...| ...+++|.. ++-.....++.++|++.|.+.|+.
T Consensus 240 tpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 240 TPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred CCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 24678888877765321 11111121111 122333322 344567789999999999999974
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.6e-07 Score=114.29 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=89.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcC-----
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP----- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p----- 357 (1104)
..+...|.- |..... .|.+.-+..++|+|||.-.+....++...+ ++.+||+|+.+| .|-..-+.++++
T Consensus 81 ~~~ws~QR~---WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 356667876 665554 455544445999999977666655555444 699999997665 677788888873
Q ss_pred CCeEEEEecChhHHH--H-HHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEE
Q 001302 358 QMNVVMYVGTSQARN--I-IREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~--~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIv 434 (1104)
...++ ||+.-..++ . .... ....|||+|||-..+.+..+.|.+.+|++|+|
T Consensus 156 ~~~~~-yh~~l~~~ekee~le~i-------------------------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifV 209 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALERI-------------------------ESGDFDILITTSQFLSKRFEELSKLKFDFIFV 209 (1187)
T ss_pred ceeee-eccccchHHHHHHHHHH-------------------------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEE
Confidence 33344 888733322 1 1111 23689999999999999999999999999999
Q ss_pred cCcccc
Q 001302 435 DEGHRL 440 (1104)
Q Consensus 435 DEaHrl 440 (1104)
|.+..+
T Consensus 210 DDVDA~ 215 (1187)
T COG1110 210 DDVDAI 215 (1187)
T ss_pred ccHHHH
Confidence 998754
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.88 E-value=1.4e-07 Score=115.83 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCC-hHHHHHHHHHHccCCCCceEEEeec
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-GAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~-~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
...|...+.+-+....+.|..|||-+..+..-+.|...|...|+++..+..... .+.-..+|.. ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 456888888888888899999999999999999999999999999999999743 3444556655 33333 479999
Q ss_pred Ccccccccc
Q 001302 685 RAGGLGINL 693 (1104)
Q Consensus 685 ragg~GINL 693 (1104)
..+|.|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999664
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.86 E-value=7.8e-08 Score=120.07 Aligned_cols=150 Identities=20% Similarity=0.299 Sum_probs=94.7
Q ss_pred hhhhHHHHHHHHHHHHHHh---------CCeEEEEecchhHHHHHHHHHhhCCC-----cEE--------EEecCCCh--
Q 001302 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTFKKW-----QYE--------RIDGKVGG-- 660 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~---------g~kvLIFsq~~~~ldiL~~~L~~~g~-----~~~--------ridG~~~~-- 660 (1104)
+..+|...|.++|...... +.+|||||++.++...|.++|...++ ++. ...|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4789999999999876544 46899999999999999999965222 111 00011100
Q ss_pred -------------------------------H---HHHHHHHHHccCCCC---ce---EEE-------------------
Q 001302 661 -------------------------------A---ERQIRIDRFNAKNSS---RF---CFL------------------- 681 (1104)
Q Consensus 661 -------------------------------~---~R~~~i~~Fn~~~~~---~~---v~L------------------- 681 (1104)
. .-+..+..|+.++.. .+ ..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0 011236666543322 00 011
Q ss_pred ----eecCcccccccccC----------------------C----------CEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 682 ----LSTRAGGLGINLAT----------------------A----------DTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 682 ----lstragg~GINL~~----------------------a----------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
++|..+.+|++.+. + +.||+|||+-..-.-+|. -|++|.|.
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEv-yra~r~~r-- 503 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEV-YKASRPLR-- 503 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHH-HHccCCCC--
Confidence 44666678888887 4 899999997555555552 24455444
Q ss_pred eEEEEEEeeCCCHHHHHHH--HHHHHHHHHHHHh
Q 001302 726 KVMIFRLITRGSIEERMMQ--MTKKKMVLEHLVV 757 (1104)
Q Consensus 726 ~V~Vyrlvt~~TvEe~i~~--~~~~K~~l~~~v~ 757 (1104)
++.||.|++.+|+||.-+- +.+.|.+...++-
T Consensus 504 ~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIr 537 (814)
T TIGR00596 504 PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIR 537 (814)
T ss_pred CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999997554 4455556555553
No 142
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.84 E-value=3.2e-08 Score=118.82 Aligned_cols=154 Identities=19% Similarity=0.297 Sum_probs=103.3
Q ss_pred cccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHH-HH
Q 001302 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WE 349 (1104)
Q Consensus 271 ~~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~q-W~ 349 (1104)
|.++-..|....+.+|-.+|.+|+--| ..|.++++|..+..|||+.|=..++.. ..+..+++.-.|-..|.| =-
T Consensus 283 f~~lVpe~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 283 FYQLVPEMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HHHhchhHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchH
Confidence 333333344445678999999998655 789999999999999999974443322 223347888899666654 56
Q ss_pred HHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----ccccc
Q 001302 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLK 425 (1104)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----~~~l~ 425 (1104)
++|+.-+.+.. .++|+..- ......+|+|-|+++.. .+.++
T Consensus 358 RDFk~tF~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 358 RDFKETFGDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHHhccccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhh
Confidence 77876665555 66676432 24567899999998753 34555
Q ss_pred CCcceEEEEcCcccccCcc-cHHHHHHHhccccc--EEEEecCC
Q 001302 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTP 466 (1104)
Q Consensus 426 ~~~w~~vIvDEaHrlkn~~-s~~~~~l~~l~~~~--rllLTgTP 466 (1104)
.+.| ||+||+|.+.+.. .-.+..+.-+-.+| .++||||=
T Consensus 403 DvE~--VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 403 DVEF--VIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred ccce--EEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 5555 9999999996643 23344443333443 58999994
No 143
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.82 E-value=5.3e-09 Score=86.65 Aligned_cols=42 Identities=60% Similarity=0.900 Sum_probs=38.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccchh
Q 001302 863 SERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEED 904 (1104)
Q Consensus 863 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 904 (1104)
..+++||++||+++|+++++++...||+|||.||||+|...+
T Consensus 21 ~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 21 STDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 458999999999999999999999999999999999996543
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.79 E-value=1.1e-07 Score=122.02 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCC-CceEEEeC-cccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~-~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~ 380 (1104)
.+.+|++.+-.|+|||++++-++..+..... ..+++||- ..+-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 4567999999999999998887777776533 36677777 4556889999998874433322 222222222210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc----ccCCcceEEEEcCcccccCcccHHHHHHHh-cc
Q 001302 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1104)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~----l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~-l~ 455 (1104)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001335999999888654322 22335568999999994 33344444433 34
Q ss_pred cccEEEEecCCCCCC
Q 001302 456 TRHRVLLTGTPLQNN 470 (1104)
Q Consensus 456 ~~~rllLTgTPlqN~ 470 (1104)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 567799999997654
No 145
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.76 E-value=1.7e-09 Score=111.94 Aligned_cols=50 Identities=48% Similarity=1.133 Sum_probs=44.8
Q ss_pred cccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...+|.+|+..++ ||+||.|+|.|||+||.||+..+|+|.|.|..|....
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 4577999998654 9999999999999999999999999999999998654
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.1e-06 Score=107.92 Aligned_cols=363 Identities=19% Similarity=0.185 Sum_probs=200.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv 362 (1104)
..|.+-|..+++-+..........+|.--+|+|||-.-+.++...+..+ +-+||+|| -++++|-...|+.-+ +.++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rF-g~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARF-GAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHh-CCChh
Confidence 4688999999998876653456689999999999998888888887775 58999999 588899888888777 48888
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc--
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl-- 440 (1104)
++|..-........+.-. ......|||-|...+-.-.. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~~----------------------~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRRA----------------------RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHHH----------------------hcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 888765554433322110 12456788888766532222 3468999999974
Q ss_pred cCcccHHHH-----HHHh-cccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 441 KNKDSKLFS-----SLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 441 kn~~s~~~~-----~l~~-l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
|..++-.+. .++. ...--.+|-||||- ++-+++. ... .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~---~~g-~----------------------------- 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---LESYANA---ESG-K----------------------------- 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---HHHHHhh---hcC-c-----------------------------
Confidence 333322221 1111 22335688899992 1111111 000 0
Q ss_pred HHHHHhHhhH-hhcCCCcEEEEEecc-------CCHHHHHHHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHhC
Q 001302 515 HLLRRVKKDV-MKELPPKKELILRVE-------LSSKQKEYYKAILTRNYQILTRRGGAQ-----ISLINVVMELRKLCC 581 (1104)
Q Consensus 515 ~~lRR~k~dv-~~~lP~k~e~~v~v~-------ls~~Q~~~Y~~il~~~~~~l~~~~~~~-----~~l~~~~~~Lrk~~~ 581 (1104)
+.+-+++.-. ...+|......+.-+ +|+. +++.| ...+.++...- ...... -+.+.|.
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~---Ll~~i----~~~l~~geQ~llflnRRGys~~--l~C~~Cg 442 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPA---LLEAI----RKTLERGEQVLLFLNRRGYAPL--LLCRDCG 442 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHH---HHHHH----HHHHhcCCeEEEEEccCCccce--eecccCC
Confidence 0000000000 012333222221111 2322 22222 22222211100 000000 1233344
Q ss_pred CccccCCCCCCcccchHHHHHHHhhhhHHHHH-----HHHHHHHHHhCCeEEEEecc--hhHHHHHHHHHhhCCCcEEEE
Q 001302 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLL-----DKMMVKLKEQGHRVLIYSQF--QHMLDLLEDYLTFKKWQYERI 654 (1104)
Q Consensus 582 hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L-----~~lL~~l~~~g~kvLIFsq~--~~~ldiL~~~L~~~g~~~~ri 654 (1104)
|..-.+.-........ ..+++..= ..+-...-+-|...|++.-. .+..+.|..+|. +.++.|+
T Consensus 443 ~v~~Cp~Cd~~lt~H~--------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP--~~rv~r~ 512 (730)
T COG1198 443 YIAECPNCDSPLTLHK--------ATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP--GARIIRI 512 (730)
T ss_pred CcccCCCCCcceEEec--------CCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC--CCcEEEE
Confidence 4332222111111100 00000000 00000001123445555432 223445555554 7899999
Q ss_pred ecCCChHH--HHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC------------ChhhHHHHHHhhHh
Q 001302 655 DGKVGGAE--RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHR 720 (1104)
Q Consensus 655 dG~~~~~~--R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w------------Np~~~~Qa~gR~hR 720 (1104)
|+.++... -..+++.|.++..+ |||.|....-|.|++....|.++|.|- ..+.+.|..||++|
T Consensus 513 d~Dtt~~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR 589 (730)
T COG1198 513 DSDTTRRKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGR 589 (730)
T ss_pred ccccccchhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhcc
Confidence 99987644 46789999887666 899999999999999999998887762 34567899999999
Q ss_pred hCCCCeEEEEEEe
Q 001302 721 LGQTNKVMIFRLI 733 (1104)
Q Consensus 721 iGQ~k~V~Vyrlv 733 (1104)
-+-...|.|--.-
T Consensus 590 ~~~~G~VvIQT~~ 602 (730)
T COG1198 590 AGKPGEVVIQTYN 602 (730)
T ss_pred CCCCCeEEEEeCC
Confidence 8777777664443
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=8.6e-07 Score=108.79 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecC-CChHHHHHHHHHHccCCCCceEEEeec
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~-~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
...|...+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-..+|.. ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4578888988888899999999999999999999999999999999999997 333444556655 34444 368999
Q ss_pred Ccccccccc
Q 001302 685 RAGGLGINL 693 (1104)
Q Consensus 685 ragg~GINL 693 (1104)
..+|.|-|+
T Consensus 497 NMAGRGTDI 505 (939)
T PRK12902 497 NMAGRGTDI 505 (939)
T ss_pred cCCCCCcCE
Confidence 999999654
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=1.1e-06 Score=108.86 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+.++.+-+..+.+.|..|||-+.++..-++|..+|..+|+++..+....- +.-..+|.. ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEecc
Confidence 457999999999999999999999999999999999999999999999887643 333345544 33333 4699999
Q ss_pred ccccccccc--------CCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 686 agg~GINL~--------~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.+|.|-++. ..=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 234788889999999999999999999987665544
No 149
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.72 E-value=3.5e-09 Score=87.46 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.3
Q ss_pred chhhhhhhccCCccc---eeeeeeeeeccccccccccCCcccc-HHHHHHHHH
Q 001302 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~~~~---~yLVKWkgL~Y~~~tWe~~~~~~~~-~~~i~~~~~ 241 (1104)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999766555 9999999999999999999888654 777999975
No 150
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.70 E-value=3.8e-07 Score=114.13 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=106.0
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCCC-
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQM- 359 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~~- 359 (1104)
-+.+|-|+|.+++.-| ..+.+++++..+|.|||+.+-.+++.-...+. .+....| +++-+|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4689999999998766 88999999999999999999776665555443 4888899 455566667765444222
Q ss_pred -eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCcceEEEE
Q 001302 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (1104)
Q Consensus 360 -~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----~~~l~~~~w~~vIv 434 (1104)
-+-+++|+.. -.....++++|-|.++.. ...+..+. .||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 2234444432 124556777777888642 34445554 5999
Q ss_pred cCcccccCcc-cHHHHHHH-hcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc
Q 001302 435 DEGHRLKNKD-SKLFSSLK-QYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1104)
Q Consensus 435 DEaHrlkn~~-s~~~~~l~-~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~ 498 (1104)
||.|.+.... +-.+..+. .+... ..++||||= ++..+|..|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 9999997643 23333333 33333 679999994 567778887753
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=6.5e-07 Score=112.98 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CC-CCceEEEeCc-ccHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
..+||.|.+.+.-+......+++++|-.+||+|||+.+|+....... .+ ..++++.+.+ +.+.|-.+|+++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 34799999999999999999999999999999999998776655443 32 2356666664 667899999988
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.60 E-value=5.3e-06 Score=105.57 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCccccccc
Q 001302 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (1104)
Q Consensus 613 L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GIN 692 (1104)
+.+.|..+...+.++||+.....++..+.+.|....++. ...|... .|.+++++|+..+.. +|+.|....+|||
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGVD 709 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCCC
Confidence 344444444567789998888888988888887655444 5556433 356789999874443 7899999999999
Q ss_pred cc--CCCEEEEECCCC
Q 001302 693 LA--TADTVIIYDSDW 706 (1104)
Q Consensus 693 L~--~ad~VIi~D~~w 706 (1104)
++ .+..|||.-.|+
T Consensus 710 ~p~~~~~~viI~kLPF 725 (820)
T PRK07246 710 FVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCeEEEEEecCCC
Confidence 97 356677776554
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.58 E-value=0.00012 Score=95.08 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHH--HHHHH---HH
Q 001302 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN--WEREF---AT 354 (1104)
Q Consensus 280 ~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~q--W~~E~---~~ 354 (1104)
...+.+.||-|.+-++.+...+..+...++-..+|+|||+.-+.-+.........|++|.+++..|.+ +.+++ .+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 44567899999999888888888888888999999999998755444333333468888888766643 44444 44
Q ss_pred HcC-CCeEEEEecChh
Q 001302 355 WAP-QMNVVMYVGTSQ 369 (1104)
Q Consensus 355 ~~p-~~~vv~~~g~~~ 369 (1104)
.++ ++++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577777776543
No 154
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.55 E-value=1.4e-06 Score=90.66 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.8
Q ss_pred EeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 681 Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
|++|...|.|+++...+.||.||.+-.+..|+.+.|||+|.|.+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 788999999999999999999999999999999999999999654
No 155
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-05 Score=93.76 Aligned_cols=254 Identities=17% Similarity=0.229 Sum_probs=139.1
Q ss_pred CcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhc------CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE-e
Q 001302 268 PKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV-A 340 (1104)
Q Consensus 268 ~~~~~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~------~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV-~ 340 (1104)
++.+.--...|. +..+-|.-.|+++|.|....+. ..-|.+|.|..|.||-.+..++|..-+-.+.++.|.+ |
T Consensus 248 ppdi~YqlalP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SV 326 (1300)
T KOG1513|consen 248 PPDITYQLALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSV 326 (1300)
T ss_pred CCCceEEEeccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEe
Confidence 333333334454 5667899999999988754432 2335789999999987776665554444555566655 4
Q ss_pred CcccHHHHHHHHHHHc-CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh
Q 001302 341 PLSTLRNWEREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1104)
Q Consensus 341 P~s~l~qW~~E~~~~~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~ 419 (1104)
.+.+-..=.+.+.... +.+.|..+..-+ .+. ++...+...+--|+++||..+..
T Consensus 327 SsDLKfDAERDL~DigA~~I~V~alnK~K------------------------Yak-Iss~en~n~krGViFaTYtaLIG 381 (1300)
T KOG1513|consen 327 SSDLKFDAERDLRDIGATGIAVHALNKFK------------------------YAK-ISSKENTNTKRGVIFATYTALIG 381 (1300)
T ss_pred ccccccchhhchhhcCCCCccceehhhcc------------------------ccc-ccccccCCccceeEEEeeHhhhh
Confidence 4455455556665443 333332221110 000 11112234566799999999975
Q ss_pred ccc--------cccC-Ccc------eEEEEcCcccccC-------cccHHHHHHHhc----ccccEEEEecCCCCCCHHH
Q 001302 420 DSA--------SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDE 473 (1104)
Q Consensus 420 ~~~--------~l~~-~~w------~~vIvDEaHrlkn-------~~s~~~~~l~~l----~~~~rllLTgTPlqN~~~E 473 (1104)
+.. .|.. +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||-.. |
T Consensus 382 Es~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----E 457 (1300)
T KOG1513|consen 382 ESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----E 457 (1300)
T ss_pred hccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----C
Confidence 432 2221 244 4899999999998 345666665554 34567788888532 2
Q ss_pred HHHHHHhhcCC------CCCChHHHHHHHhcc--chHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHH
Q 001302 474 LFMLMHFLDAG------KFGSLEEFQEEFKDI--NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQK 545 (1104)
Q Consensus 474 L~~ll~fL~p~------~~~~~~~F~~~f~~~--~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~ 545 (1104)
=-++.-+.+-+ .|+++.+|......- ...+.+. .--.++...+-|- -.+......+-.|+||++-+
T Consensus 458 PrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVA-MDMK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~ 531 (1300)
T KOG1513|consen 458 PRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVA-MDMKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFR 531 (1300)
T ss_pred cchhhhhhhhccccCCCcCccHHHHHHHHHhcCCceeeeee-hhhhhhhhhhhhh-----ccccCceEEEEecccCHHHH
Confidence 22233333333 356666665544211 0011110 0011222222221 13445567788999999999
Q ss_pred HHHHHHHHHHHH
Q 001302 546 EYYKAILTRNYQ 557 (1104)
Q Consensus 546 ~~Y~~il~~~~~ 557 (1104)
+.|..-..--.+
T Consensus 532 k~Yn~a~~LW~e 543 (1300)
T KOG1513|consen 532 KVYNRAAELWAE 543 (1300)
T ss_pred HHHHHHHHHHHH
Confidence 999865443333
No 156
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=2.5e-08 Score=115.93 Aligned_cols=47 Identities=47% Similarity=1.129 Sum_probs=42.8
Q ss_pred ccccccccCCCCe---eecCCCCCccccCcCCCCC--CCCCCCCCccCcCCC
Q 001302 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~~l---~~C~~C~~~~H~~Cl~p~l--~~~p~~~W~C~~C~~ 97 (1104)
+++|..|++.|.. ++||+|+++||+.||.||+ ..+|.|.|+|++|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4599999998875 9999999999999999995 678999999999985
No 157
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.50 E-value=6.8e-06 Score=99.56 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC-cccHHHHHHHHH-HH-cCCCeE
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFA-TW-APQMNV 361 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P-~s~l~qW~~E~~-~~-~p~~~v 361 (1104)
.-.+|.+-+ .....+...+|..++-.|||...--++...++. ..+.++.|+| ++++.|-..++. ++ ++.+..
T Consensus 512 Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 445888754 444888999999999999999988888776664 4568999999 566677666653 33 222221
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc-ccCC----cceEEEEcC
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-LKPI----KWQCMIVDE 436 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~-l~~~----~w~~vIvDE 436 (1104)
|..-.-...++|.. ....++|+||-++.+..-.-. -... +..+||+||
T Consensus 588 ----g~sl~g~ltqEYsi-----------------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 ----GVSLLGDLTQEYSI-----------------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ----chhhHhhhhHHhcC-----------------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 11111122233321 234788999999987543211 0011 346999999
Q ss_pred cccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH
Q 001302 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1104)
Q Consensus 437 aHrlkn~-~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~ 479 (1104)
+|.+.|. .+.....+..+..---|+|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999886 5677777777777778999999 588888777666
No 158
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.48 E-value=6.3e-06 Score=97.30 Aligned_cols=139 Identities=20% Similarity=0.326 Sum_probs=91.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcCCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p~~~v 361 (1104)
.+|-|+|..++.- ..++.++++..-+..|||+.| .|++..|... .+++.-.|-..| +|=.+|+..=+.+ |
T Consensus 128 F~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 6899999999764 489999999999999999998 4555555544 377888885444 5667777654323 3
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhh----ccccccCCcceEEEEcCc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~----~~~~l~~~~w~~vIvDEa 437 (1104)
-..+|+-. -.+....+|+|-++++. .....+.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 33344321 12345678888888865 3455666777 999999
Q ss_pred ccccCcccH-HH-HHHHhcc-cccEEEEecC
Q 001302 438 HRLKNKDSK-LF-SSLKQYS-TRHRVLLTGT 465 (1104)
Q Consensus 438 Hrlkn~~s~-~~-~~l~~l~-~~~rllLTgT 465 (1104)
|.++....- .+ ..+.-+. .-+-+.||||
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEecc
Confidence 999864321 11 1112222 2345788998
No 159
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.46 E-value=1.6e-05 Score=100.22 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHHHhCCeEEEEecchhHHHHHHHHHhhCCCc-EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccC--
Q 001302 619 KLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT-- 695 (1104)
Q Consensus 619 ~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~-- 695 (1104)
-+...+.++|||...-.++..+.+.+...... .....|..+ +...++.|.+.... .|++.+....+|||++.
T Consensus 474 ~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~ 548 (654)
T COG1199 474 ILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDA 548 (654)
T ss_pred HHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCC
Confidence 33445568999999999999999999876653 444455544 34889999887665 48999999999999985
Q ss_pred CCEEEEECCCCC-hh-----------------------------hHHHHHHhhHhhCCCCeEEE
Q 001302 696 ADTVIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 696 ad~VIi~D~~wN-p~-----------------------------~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
...|||.-.||= |. ...|++||+.|--+.+-|.|
T Consensus 549 l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 549 LRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 588999877763 22 13599999999555555443
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.44 E-value=9.7e-05 Score=90.33 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH-HHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc-----CCCeEE
Q 001302 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l-~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~-----p~~~vv 362 (1104)
|.+-+.++...+..+...++-..+|+|||+..+.-+ .++......++||++|+ .+..|+.+++.... ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 777777888888888889999999999999876554 34333334699999996 55578888876554 256677
Q ss_pred EEecCh
Q 001302 363 MYVGTS 368 (1104)
Q Consensus 363 ~~~g~~ 368 (1104)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 766643
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.44 E-value=2.2e-06 Score=107.13 Aligned_cols=143 Identities=19% Similarity=0.305 Sum_probs=90.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeCcccHH-HHHHH---------HHHHcCC--CeEEEEecChh--
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWERE---------FATWAPQ--MNVVMYVGTSQ-- 369 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l~-qW~~E---------~~~~~p~--~~vv~~~g~~~-- 369 (1104)
.+..+.++||+|||.+++..+.+|... +...||||||...+. ....- |...+++ +...+|...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999775 566999999975442 22222 2222222 34444543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--c------c--cCCcce----
Q 001302 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------L--KPIKWQ---- 430 (1104)
Q Consensus 370 -~r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~------l--~~~~w~---- 430 (1104)
.| ..++.+ . . .........+|+|+|-+++.++.. . + ...+|+
T Consensus 140 ~gr~~~~~~i~~F--a-~----------------~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNF--V-K----------------ASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHH--H-h----------------ccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 112211 0 0 000112356899999999976421 1 1 113443
Q ss_pred ---EEEEcCcccccCcccHHHHHHHhcccccEEEEecCCC
Q 001302 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1104)
Q Consensus 431 ---~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPl 467 (1104)
+||+||+|++.. ..+.+.++..+...+.|.-|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 899999999965 345678899999999999999964
No 162
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.36 E-value=4e-05 Score=90.74 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred eEEEEecchhHHHHHHHHHhhC----CC----cEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCC
Q 001302 626 RVLIYSQFQHMLDLLEDYLTFK----KW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1104)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~----g~----~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad 697 (1104)
-+|||-.-...++.+.+.|... +- -+.-+.|+.+.++..++ |...+.+...+++||..+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 6889988777666655555432 21 24568999998876654 6665655666899999999999999988
Q ss_pred EEEEECCC------CChh-----------hHHHHHHhhHhhCCCCeEEEEEEeeCCCH
Q 001302 698 TVIIYDSD------WNPH-----------ADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1104)
Q Consensus 698 ~VIi~D~~------wNp~-----------~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1104)
.|| |+. |||. .-.||..|++|-|.+.+..+|||+++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 776 443 4553 45688888888888999999999998766
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.31 E-value=3.8e-05 Score=93.86 Aligned_cols=113 Identities=11% Similarity=0.303 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra 686 (1104)
+....+...|+..| ..|++|-|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 34455666677665 468999999999999999999999999999999988776522 222 33447888889
Q ss_pred ccccccccC--CCEEEEE--CCCCChhh--HHHHHHhhHhhCCCCeEEEE
Q 001302 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 687 gg~GINL~~--ad~VIi~--D~~wNp~~--~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
...|+++-. .|.|..| .....|.. ..|.+||+-.+.. +++.||
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 999999864 4666666 33344554 6899999998874 445444
No 164
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.27 E-value=3.4e-07 Score=75.59 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.4
Q ss_pred chhhhhhhccCC--ccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~--~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.|++||++|... +..+|||||+|++|++|||+....+......++.|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 359999999766 7889999999999999999998877655677887763
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.25 E-value=0.00018 Score=90.53 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC-CCcEEEEecCCChHHHHHHHHHHcc----CCCCceEEEeecCc
Q 001302 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA----KNSSRFCFLLSTRA 686 (1104)
Q Consensus 612 ~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~R~~~i~~Fn~----~~~~~~v~Llstra 686 (1104)
.+.+.|..+...+.++|||.....+++.+.+.|... ++. +.+.|. ..|.++++.|.. ++. .+|++|..
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~~s 594 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEecc
Confidence 344444444445556888888888888888888642 333 334553 357888877764 222 36888889
Q ss_pred ccccccccC--CCEEEEECCCC
Q 001302 687 GGLGINLAT--ADTVIIYDSDW 706 (1104)
Q Consensus 687 gg~GINL~~--ad~VIi~D~~w 706 (1104)
..+|||++. +..|||.-.|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999985 78999988776
No 166
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.21 E-value=9.2e-05 Score=92.33 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHh--CCeEEEEecchhHHHHHHHHHh----hCC---CcEEEEecCCChHHHHHHHHHHccCCCCceE
Q 001302 609 KLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFC 679 (1104)
Q Consensus 609 Kl~~L~~lL~~l~~~--g~kvLIFsq~~~~ldiL~~~L~----~~g---~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v 679 (1104)
...++..++..+.+. ...+|||-.-..-+..+.+.|. ... +-...++++++..+.+.+ |+.+..+...
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445566666655443 3589999988776666666664 232 456778999998877765 7777887777
Q ss_pred EEeecCcccccccccCCCEEE--------EECCC---------C-ChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHH
Q 001302 680 FLLSTRAGGLGINLATADTVI--------IYDSD---------W-NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1104)
Q Consensus 680 ~Llstragg~GINL~~ad~VI--------i~D~~---------w-Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~ 741 (1104)
++++|..+..+|.+..+-.|| .||+. | +-++-.||.|||+| ..+-.+|+|+++.-.+..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEKL 549 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhhc
Confidence 899999999999998876665 34443 2 23334566666666 667789999988755544
Q ss_pred H
Q 001302 742 M 742 (1104)
Q Consensus 742 i 742 (1104)
+
T Consensus 550 ~ 550 (924)
T KOG0920|consen 550 M 550 (924)
T ss_pred c
Confidence 3
No 167
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.20 E-value=3.1e-05 Score=94.67 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCcccHHH-HHHHHHHHc--CCCe
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLRN-WEREFATWA--PQMN 360 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~s~l~q-W~~E~~~~~--p~~~ 360 (1104)
.|+++|.+.+.- .....++|.|.+.+++.|||+.| |..+..++.. .+..|.+.|--.+.+ =..++..+. -+++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-RRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-hhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 578888887642 22247899999999999999987 3333333332 246677778443333 333333333 1345
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccC----CcceEEEEcC
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDE 436 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~----~~w~~vIvDE 436 (1104)
|-.|.|.-. +. .....-+|.|+|-|........|-. ..-.+|||||
T Consensus 300 ve~y~g~~~------------p~------------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 300 VEEYAGRFP------------PE------------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred chhhcccCC------------CC------------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 555554211 11 0123457889999988776554422 1346899999
Q ss_pred cccccCc--ccHHHHHHHhc----ccc--cEEEEecCCCCC
Q 001302 437 GHRLKNK--DSKLFSSLKQY----STR--HRVLLTGTPLQN 469 (1104)
Q Consensus 437 aHrlkn~--~s~~~~~l~~l----~~~--~rllLTgTPlqN 469 (1104)
-|-+... +..+-..|..+ ... ..++||||-..|
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 9998543 22222222222 222 269999996433
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.20 E-value=7.1e-06 Score=80.23 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=71.1
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcC
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~ 381 (1104)
.++.-.+|-.-.|.|||-..+.-+..-.-....++||+.|.-.+. +|+.+...+..+. ++...-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec----------
Confidence 456667899999999999876543322222335999999987774 4555555455532 22111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEccHHHHhhcc-ccccCCcceEEEEcCcccccCcccHHHHH-HHhccc---
Q 001302 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYST--- 456 (1104)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~-~~l~~~~w~~vIvDEaHrlkn~~s~~~~~-l~~l~~--- 456 (1104)
.....--|-+++|.++.... ......+|++||+||||-. .+.|..... +..+..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 01123346778888875532 2334568999999999973 444433332 222321
Q ss_pred ccEEEEecCC
Q 001302 457 RHRVLLTGTP 466 (1104)
Q Consensus 457 ~~rllLTgTP 466 (1104)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2579999999
No 169
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=7.1e-07 Score=104.53 Aligned_cols=49 Identities=33% Similarity=0.851 Sum_probs=43.0
Q ss_pred ccccccccCCCC---eeecCCCCCc-cccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~---l~~C~~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
..-|.+|...+. ||+||.|..+ ||++||+|+|..+|-+.|+|+.|....
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 455888987653 9999999999 999999999999999999999999643
No 170
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.15 E-value=6e-07 Score=72.84 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.5
Q ss_pred ccccccC---CCCeeecCCCCCccccCcCCCCCC--CCCCCCCccCcCC
Q 001302 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1104)
Q Consensus 53 ~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~--~~p~~~W~C~~C~ 96 (1104)
+|.+|+. .+.++.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888887 456999999999999999999987 4455699999996
No 171
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.13 E-value=0.0001 Score=92.32 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=81.8
Q ss_pred CCeEEEEecchhHHHHHHHHHhh----CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 624 g~kvLIFsq~~~~ldiL~~~L~~----~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
..-+|||-.-...++-..+.|.. ....++-++|..+.++..++ |+....++..+++||+.+..+|++.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34689998888887777777776 45778889999998887774 665555534479999999999999998888
Q ss_pred EEECCC------CChhhHH-----------HHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 700 IIYDSD------WNPHADL-----------QAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 700 Ii~D~~------wNp~~~~-----------Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
| |+. |||..-+ .|.-|++|-|.+.+-..|||++++..+
T Consensus 336 I--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 I--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred e--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7 442 3433322 345556666667789999999987665
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.13 E-value=1.6e-05 Score=89.28 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcCCC----CceEEEeCccc-HHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~~~----~p~LIV~P~s~-l~qW~~E~~~~ 355 (1104)
.+.||.|++-++-+...+..+..+|+-.++|+|||+..+..+. ++..... .++++++++.. +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999988888889999999999999999999877654 4443333 27788887543 34445555554
No 173
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.13 E-value=1.6e-05 Score=89.28 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcCCC----CceEEEeCccc-HHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~~~----~p~LIV~P~s~-l~qW~~E~~~~ 355 (1104)
.+.||.|++-++-+...+..+..+|+-.++|+|||+..+..+. ++..... .++++++++.. +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999988888889999999999999999999877654 4443333 27788887543 34445555554
No 174
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.11 E-value=0.0021 Score=81.03 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHHH----hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcc-cHHHHHHHHHHHc--CC
Q 001302 287 HPYQLEGLNFLRF----SWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLS-TLRNWEREFATWA--PQ 358 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~----~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s-~l~qW~~E~~~~~--p~ 358 (1104)
+-+|-.+++.+.. ....|--|+-...||.|||+.=.=+++.|.....+ ++-|..=+. +..|--+++++-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 4588888876643 22334446778899999999988888888777766 666665554 4456666766533 35
Q ss_pred CeEEEEecChhHHHHHHHhhhcCC----CCchh--hhc---------cccCccc----------cccccccccccEEEcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFP----KNPKK--VKK---------KKSGQVV----------SESKQDRIKFDVLLTS 413 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~----~~~~~--~~~---------~~~~~~~----------~~~~~~~~~~dVvits 413 (1104)
-...|..|+...++.....+--.. .++.. ..- ...+.+. ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 567888899888876542211000 00000 000 0000000 0011122345788999
Q ss_pred HHHHhhcccccc---------CCcceEEEEcCcccccCcccHHHHHHHh---cccccEEEEecCCCCCCHHHHH
Q 001302 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDELF 475 (1104)
Q Consensus 414 ye~l~~~~~~l~---------~~~w~~vIvDEaHrlkn~~s~~~~~l~~---l~~~~rllLTgTPlqN~~~EL~ 475 (1104)
.+.+......++ .+.=..|||||+|-+-.........+.. .-....++||||--..-...|+
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 888865442222 1223589999999764333222222222 2246789999996544444443
No 175
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00057 Score=84.38 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.-.|+.++.+-+......|..|||-+..+..-+.|...|...|++...++..-. .|++-|-.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 457899999999999999999999999999999999999999999999988765 333333333 33333 3588999
Q ss_pred ccccccccc-CCC----------EEEEECCCCChhhHHHHHHhhHhhCC
Q 001302 686 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQ 723 (1104)
Q Consensus 686 agg~GINL~-~ad----------~VIi~D~~wNp~~~~Qa~gR~hRiGQ 723 (1104)
.+|+|-++. ..+ .||--.-.-+-..+.|-.||++|.|-
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 999999986 333 45666666667778899999999993
No 176
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.05 E-value=8.5e-06 Score=89.13 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHccCCCCceEEEeecCcccccccccCC----C----EEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA----D----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 665 ~~i~~Fn~~~~~~~v~Llstragg~GINL~~a----d----~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
...+.|+++... ++|-++|||.||+|++- | .-|+++++|+....+|.+||+||.||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789876433 45557999999999953 2 357899999999999999999999999886655566666
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 001302 737 SIEERMMQMTKKKMVLEHLVV 757 (1104)
Q Consensus 737 TvEe~i~~~~~~K~~l~~~v~ 757 (1104)
..|.+......+|+..-.+..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999998888886544443
No 177
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.04 E-value=1.7e-06 Score=71.36 Aligned_cols=49 Identities=37% Similarity=0.630 Sum_probs=41.7
Q ss_pred chhhhhhhc-cCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r-~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.|++||++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 3 ~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 3 EVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred chheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 389999999 7777889999999999999999988776546777887765
No 178
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.02 E-value=1.2e-05 Score=89.21 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCeEEEEecchhHHHHHHHHHhhC---CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE
Q 001302 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1104)
Q Consensus 624 g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI 700 (1104)
-.|.||||....-.|-|+.++..+ .|+.+.++|...+.+|.+-++.|...+ +.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d---vkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD---VKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC---eEEEEEehhhhccccccCCceEE
Confidence 469999999999999999999765 467889999999999999999997644 45999999999999999999999
Q ss_pred EECCCCChhhHHHHHHhhHhh
Q 001302 701 IYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~hRi 721 (1104)
....+-..++|..+|||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 179
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.00 E-value=0.00015 Score=85.25 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=66.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECC----CCCh-----------hhHH
Q 001302 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS----DWNP-----------HADL 712 (1104)
Q Consensus 648 g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~----~wNp-----------~~~~ 712 (1104)
++.+.-|....+.+...++ |+....+...++++|..+...|.++..-.||=.-. -+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5566666777765544443 66555565668999999999999999888873211 2343 3334
Q ss_pred HHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHH
Q 001302 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1104)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~ 744 (1104)
||-.|++|-|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 56667777777889999999999998888764
No 180
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.86 E-value=1.1e-05 Score=78.80 Aligned_cols=28 Identities=46% Similarity=1.066 Sum_probs=26.0
Q ss_pred ccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 72 AYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 72 ~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
+||+.||.|||..+|.|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 5999999999999999999999999754
No 182
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.78 E-value=1.1e-05 Score=84.01 Aligned_cols=48 Identities=35% Similarity=1.007 Sum_probs=40.2
Q ss_pred ccccccccccccCC--CCeeecCC--CCC-ccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 47 IDAKDDSCQACGES--ENLMSCDT--CTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~--~~l~~C~~--C~~-~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+++...+| -|++. |.|+-||+ |.+ +||+.|+ .|..+|.|.|+|++|..
T Consensus 217 se~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 217 SEGEELYC-FCQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred ccCceeEE-EecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 34566788 57765 78999995 996 4999999 99999999999999974
No 183
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.75 E-value=3.2e-06 Score=69.74 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=37.7
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.|++||+.|....... ..+|||||+|++|.||||+|++.|... +| ..+..|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888764321110 359999999999999999999988642 23 346777653
No 184
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.69 E-value=0.0003 Score=76.15 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCc-EEEEcCCCchHHHHHHHHHHHHh-------cCCCCceEEEeCc-ccHHHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~-~ILademGlGKTiqai~~l~~l~-------~~~~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
+|.+.|.+++..+ ..... .++.-..|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4788999998655 44555 88999999999988888887773 3344599999994 566776666665
No 185
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.61 E-value=1.9e-05 Score=88.64 Aligned_cols=48 Identities=46% Similarity=1.041 Sum_probs=41.9
Q ss_pred ccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCC----CCccCcCC
Q 001302 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSG----SWRCPECV 96 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~----~W~C~~C~ 96 (1104)
.....|.+|+...+ |+.||+|...||+-||.|||+..|.. .|.|.+|.
T Consensus 542 a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 542 AMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 34567999998765 89999999999999999999999965 49999994
No 186
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.61 E-value=2e-05 Score=64.94 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.3
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~ 172 (1104)
.+++||+.|.... ....+|||||+|++|.||||+|++.|... ..++..|.+
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4678888864431 01259999999999999999999998642 245677754
No 187
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.58 E-value=2.6e-05 Score=86.43 Aligned_cols=45 Identities=31% Similarity=0.835 Sum_probs=38.0
Q ss_pred cccccc-ccCCCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~-C~~~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+|.+ |...|.|+.||. |+ .+||+.|+ .|...|.|.||||.|..
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 345533 445688999997 99 99999999 99999999999999985
No 188
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.58 E-value=0.0015 Score=77.02 Aligned_cols=85 Identities=22% Similarity=0.223 Sum_probs=58.4
Q ss_pred CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCC------Chh-------------
Q 001302 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPH------------- 709 (1104)
Q Consensus 649 ~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w------Np~------------- 709 (1104)
+-++-|..+.+.+...++ |...+.+...++|+|..+...|.+.....|| ||.+ ||.
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 345667888887766655 5544554455799999999999998887776 6654 432
Q ss_pred -hHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHH
Q 001302 710 -ADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1104)
Q Consensus 710 -~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~ 741 (1104)
.-.||-|||+|.| +-..|||+|.-+++..
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~aY~~e 611 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAWAYEHE 611 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechhhhhhh
Confidence 2346666666655 7778999997665543
No 189
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.57 E-value=0.00026 Score=81.86 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=78.6
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCc-EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI 700 (1104)
..|+-|+-||.-. +-.+...++.+|.. .+.|.|+.+++.|.+--..||++.++. .+|++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~-dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC-DVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc-ceEEeecccccccccc-eeEEE
Confidence 3588899998642 22344455556555 999999999999999999999876654 4899999999999995 68999
Q ss_pred EECCC---------CChhhHHHHHHhhHhhCCC
Q 001302 701 IYDSD---------WNPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 701 i~D~~---------wNp~~~~Qa~gR~hRiGQ~ 724 (1104)
+++.- -.-.+..|.-|||+|.|.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99764 3456778999999999876
No 190
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.52 E-value=0.0012 Score=72.57 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=75.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH----HHHHHHHHHHcCC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l----~qW~~E~~~~~p~ 358 (1104)
|..+++-|+-|+--| ..|-|.-..||=|||+++.. ++++..-...++=||+.+..| .+|...|-+++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l-~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAAL-PAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHH-HHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHH-HHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456778888886433 34559999999999998753 344444333478888888777 45888888888 7
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---------cccccCCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~---------~~~l~~~~w 429 (1104)
+.+-...+........ .....+|+-+|-..+..| ......-.+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 8887776654322111 124567888887777543 111123467
Q ss_pred eEEEEcCcccc
Q 001302 430 QCMIVDEGHRL 440 (1104)
Q Consensus 430 ~~vIvDEaHrl 440 (1104)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998764
No 191
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.50 E-value=4.5e-05 Score=80.11 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=39.9
Q ss_pred cccccccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccC
Q 001302 46 RIDAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP 93 (1104)
Q Consensus 46 ~~~~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~ 93 (1104)
+....+..|.+|+++ +.+++||.|+|+||..|+ .|...|.|.|.|.
T Consensus 309 W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD 357 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICD 357 (381)
T ss_pred hhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhh
Confidence 334466789999976 359999999999999999 9999999999998
No 192
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.42 E-value=0.0037 Score=71.43 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=49.4
Q ss_pred EEEeecCcccccccccCCCEEEEECCC------CC-----------hhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHH
Q 001302 679 CFLLSTRAGGLGINLATADTVIIYDSD------WN-----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1104)
Q Consensus 679 v~Llstragg~GINL~~ad~VIi~D~~------wN-----------p~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~ 741 (1104)
.+++||..+...+.+.+.-.|| ||. +| |..-.||..|++|.|.+++-..|+|+|+..++..
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 4689999999988887765555 665 34 4456799999999999999999999998766654
Q ss_pred H
Q 001302 742 M 742 (1104)
Q Consensus 742 i 742 (1104)
+
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 4
No 193
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.12 E-value=0.00022 Score=84.33 Aligned_cols=90 Identities=27% Similarity=0.647 Sum_probs=60.3
Q ss_pred ccccccccccCC-----CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcCCCCCcccc
Q 001302 49 AKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKL 123 (1104)
Q Consensus 49 ~~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~~~~~~~~~ 123 (1104)
+++..|.+|..+ .+|++||.|.-..|+.|. .+..+|++.|.|..|.-.. ...-+| .|..-+.-.....
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~-~ppCvL----CPkkGGamK~~~s 341 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGI-EPPCVL----CPKKGGAMKPTKS 341 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccC-CCCeee----ccccCCcccccCC
Confidence 356789999876 349999999999999999 8999999999999998531 112222 2322221111111
Q ss_pred cccchhhhhhhhhhcCcccccc-cccchHhHHHHhh
Q 001302 124 GSKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKAFK 158 (1104)
Q Consensus 124 ~~~~~~~~eylVKwk~~Sy~h~-~W~~~~~l~~~~~ 158 (1104)
+. + |.|.-| -|+||-.+.+.-+
T Consensus 342 gT----------~---wAHvsCALwIPEVsie~~ek 364 (893)
T KOG0954|consen 342 GT----------K---WAHVSCALWIPEVSIECPEK 364 (893)
T ss_pred CC----------e---eeEeeeeeccceeeccCHhh
Confidence 11 2 556666 7999988876533
No 194
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0012 Score=79.33 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=48.5
Q ss_pred HHHccCCCCceEEEeecCcccccccccCCCEEE--------EECC---------CC-ChhhHHHHHHhhHhhCCCCeEEE
Q 001302 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVI--------IYDS---------DW-NPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 668 ~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI--------i~D~---------~w-Np~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
.-|...+.+....+++|.++...|.++....|| +||+ +| +-+.--||-|||+|+| +-+.
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCce
Confidence 347666666666899999999999999999887 3443 34 3344568888888877 6678
Q ss_pred EEEeeC
Q 001302 730 FRLITR 735 (1104)
Q Consensus 730 yrlvt~ 735 (1104)
|||++.
T Consensus 698 YRLYSS 703 (1172)
T KOG0926|consen 698 YRLYSS 703 (1172)
T ss_pred eehhhh
Confidence 898864
No 195
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.05 E-value=0.0022 Score=78.00 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=41.6
Q ss_pred EEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhC
Q 001302 679 CFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1104)
Q Consensus 679 v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiG 722 (1104)
.|+.|--|+-+|-+-|.+=+++=+-+.-|-..-.|-+||..|+-
T Consensus 485 RFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 485 RFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred eeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 48999999999999999999999999999999999999999975
No 196
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.04 E-value=0.00011 Score=80.14 Aligned_cols=25 Identities=52% Similarity=0.929 Sum_probs=23.0
Q ss_pred hhhhhhhcCcccccccccchHhHHH
Q 001302 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~~l~~ 155 (1104)
.||||||+|||+.||||+|++++..
T Consensus 26 vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 26 VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred eEEEEEecccccccCccCccccccC
Confidence 3999999999999999999999863
No 197
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.95 E-value=0.00061 Score=86.24 Aligned_cols=63 Identities=29% Similarity=0.737 Sum_probs=48.6
Q ss_pred ccccccccccCCC-----CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcCC
Q 001302 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1104)
Q Consensus 49 ~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~~ 116 (1104)
..+..|.+|.++. .+|.||.|..++|++|.. ...+|+|.|.|..|.-.+... +.|-+.|...+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~g 284 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKGG 284 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCCC
Confidence 4567899998763 389999999999999995 667899999999999766444 44444555443
No 198
>PRK10536 hypothetical protein; Provisional
Probab=96.93 E-value=0.0052 Score=66.79 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh-cCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEE
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~-~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~ 364 (1104)
....|...+.+| ..+..+++.-+.|+|||..++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 3456888999999999999999988654 4333455555443322 23333343
Q ss_pred ecChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 365 ~g~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
|+..++- +....+....... ... .. ....-.|-|.+...++. ..+.-++|||||||
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~~--~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGASF--MQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHH--HHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2222211 0000010000000 000 00 00012245555444432 12334789999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCC
Q 001302 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~ 470 (1104)
++.- ......+..+....+++++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8754 45556667788899999999997765
No 199
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.88 E-value=0.00044 Score=77.99 Aligned_cols=65 Identities=31% Similarity=0.735 Sum_probs=51.3
Q ss_pred ccccccccccccCCCC-----eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcCC
Q 001302 47 IDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~-----l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~~ 116 (1104)
++.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-.. ..|.+|-+.|...|
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~---~~i~~C~fCps~dG 258 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGE---YQIRCCSFCPSSDG 258 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhcccc---cceeEEEeccCCCC
Confidence 3445678999986543 9999999999999999 7788999999999998655 34555666776554
No 200
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=96.87 E-value=0.00042 Score=56.90 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.4
Q ss_pred hhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.+|||||+|+++.+|||+|.+.|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999998631 1356666543
No 201
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.84 E-value=0.0051 Score=71.17 Aligned_cols=132 Identities=15% Similarity=0.220 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh----CCC----cEEEEecCCChHHHHHHHHHHccCCCCc
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~----~g~----~~~ridG~~~~~~R~~~i~~Fn~~~~~~ 677 (1104)
.+.|+....+++..+...|-|+|-||...+..+++-...+. -|- .+..+.|+...++|.++-...- .++
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 56788888899999999999999999988876554332221 111 1334668888888888766552 345
Q ss_pred eEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHH
Q 001302 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERM 742 (1104)
Q Consensus 678 ~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i 742 (1104)
.+-+++|.|+.+||++-..|.|+.+.-+.+-+++-|..|||+|-... ...|| .+..+.||..-
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~Y 646 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQYY 646 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhHh
Confidence 56799999999999999999999999999999999999999996533 23332 34445566654
No 202
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.82 E-value=0.00054 Score=84.42 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.8
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
++.|.+|.+.++++||.+|++.||+.|..||+...|+..|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 46799999999999999999999999999999999999999999984
No 203
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.81 E-value=0.00057 Score=80.48 Aligned_cols=49 Identities=35% Similarity=0.962 Sum_probs=43.6
Q ss_pred ccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+..|..|+.+|+ ++.|+.|+-+||-+|..|+...+|.+.|+|+.|..
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 44577888887766 89999999999999999999999999999998873
No 204
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.75 E-value=0.00032 Score=92.38 Aligned_cols=51 Identities=33% Similarity=0.918 Sum_probs=45.1
Q ss_pred ccccccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 49 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 49 ~~~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
.....|.+|...+ +++.|+.|..+||+.|+.|.+...|.++|+||.|....
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3557899998754 49999999999999999999999999999999998644
No 205
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.72 E-value=0.011 Score=62.58 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=68.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHHHHHHcCCCeEEEE
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~ 364 (1104)
+-+.|...++.|. ...-+++.-..|+|||+.|++....+...+ ..+++|+-|..-.. +++ -+.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~---~~l-Gflp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG---EDL-GFLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc---ccc-ccCC-------
Confidence 4568999988774 666788999999999999999888776654 35777777755331 221 1111
Q ss_pred ecChhHH------HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 365 VGTSQAR------NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 365 ~g~~~~r------~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
|+..++ ......+.++....... -.....|-+.+...++. ..++..+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 221111 11111111111110000 00111233333322221 23455899999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 001302 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~ 471 (1104)
++.. ..+...+.++....++.++|-|-|.+.
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 8643 344455667778899999999977653
No 206
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.52 E-value=0.0043 Score=71.37 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=49.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCC-C-ceEEEeCc
Q 001302 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (1104)
Q Consensus 278 P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~-~-p~LIV~P~ 342 (1104)
|.+.+-...+|-|.+-..-+......+++|+|-++.|+|||+.-++++.......+ . .-||-|..
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 44444457899999888778888899999999999999999999887665543322 2 45666653
No 207
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.45 E-value=0.0026 Score=62.29 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.7
Q ss_pred eEEEEcCcccccCcccHHHHHHHhc--ccccEEEEecCC
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l--~~~~rllLTgTP 466 (1104)
.+|||||+|++. +......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555555555 466789999999
No 208
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.41 E-value=0.0064 Score=62.67 Aligned_cols=103 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred HHhCCeEEEEecchhHHHHHHHHHhhCCC--cEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC--cccccccccC-
Q 001302 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 695 (1104)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr--agg~GINL~~- 695 (1104)
...+.++|||...-..++.+.+.+...+. .+..+.- +...+..+++.|...... +|+++. ...+|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976532 1112221 356889999999885433 677777 8899999984
Q ss_pred -CCEEEEECCCC-Chhh-----------------------------HHHHHHhhHhhCCCCeEE
Q 001302 696 -ADTVIIYDSDW-NPHA-----------------------------DLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 696 -ad~VIi~D~~w-Np~~-----------------------------~~Qa~gR~hRiGQ~k~V~ 728 (1104)
+..||+.-.|+ +|.. ..||+||+.|-.+..-+.
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 78999998886 2321 248899999876654443
No 209
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.38 E-value=0.001 Score=76.71 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=42.0
Q ss_pred cccccccCCC-----CeeecCCCCCccccCcCCCCCCC----CCCCCCccCcCCCCCCcccc
Q 001302 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDIDK 104 (1104)
Q Consensus 52 ~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~~~iek 104 (1104)
..|.+|+.++ .||.|+.|...||..|+.|+++. -+...|+|..|......+..
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r 230 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPR 230 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccc
Confidence 3488998653 49999999999999999999764 35677999999986544443
No 210
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.34 E-value=0.0034 Score=69.92 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=49.0
Q ss_pred CccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhhhcc
Q 001302 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1104)
Q Consensus 190 ~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~~~~ 246 (1104)
+...|++|+++|...|..+|||||+|-|=.+.|||.+.+...+.+.|+.|..-....
T Consensus 47 ~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 47 EEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred chhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 445899999999888889999999999999999999886667899999998754433
No 211
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.26 E-value=0.017 Score=67.19 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeCcccHHHHHHH
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l~qW~~E 351 (1104)
.|+.-..|+|||+.++.++..+... .....+++|++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 4677789999999999999998322 23467888887777665443
No 212
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.23 E-value=0.0076 Score=71.30 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=61.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p~~~vv 362 (1104)
.+|.--|..||... -++.=.||.-+.|+|||+++.+++++|.....+|+||++|.++ +.|-..-|.+- +++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999766 3556689999999999999999999999988889999999665 56766666653 57776
Q ss_pred EEec
Q 001302 363 MYVG 366 (1104)
Q Consensus 363 ~~~g 366 (1104)
-+..
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6543
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.20 E-value=0.051 Score=57.55 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
+|.+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|.+..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987742 2334577888999999987666555555543 699999997654
No 214
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.12 E-value=0.028 Score=70.04 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhcc
Q 001302 313 MGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1104)
Q Consensus 313 mGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (1104)
.|+|||-.-+.++...+..+. .+||++| -+++.|+..-|...+++..+.++|+.....+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988877653 6999999 578899999999999767899999876665544443211
Q ss_pred ccCccccccccccccccEEEccHHHHhhccccccCC-cceEEEEcCcccc--cCcccHH-----HHHHHh-cccccEEEE
Q 001302 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKL-----FSSLKQ-YSTRHRVLL 462 (1104)
Q Consensus 392 ~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~-~w~~vIvDEaHrl--kn~~s~~-----~~~l~~-l~~~~rllL 462 (1104)
......|||-|...+ |..+ +..+|||||=|.- |...+-. ...++. ...-..++.
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 123567888886544 2222 4579999999874 3332211 111111 123356777
Q ss_pred ecCC
Q 001302 463 TGTP 466 (1104)
Q Consensus 463 TgTP 466 (1104)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 215
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.72 E-value=0.0047 Score=80.72 Aligned_cols=179 Identities=26% Similarity=0.394 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCch--HHHHHHHHHHHHhcC-CCCceEEEeCcccHHHHHHHHHHHcCCCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlG--KTiqai~~l~~l~~~-~~~p~LIV~P~s~l~qW~~E~~~~~p~~~v 361 (1104)
.+.++|.....-.. ........++++.|+| ||+.+..+....... .....++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVL--NELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhh--hhhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 45556665542211 1222238889999999 899987776665444 3458899999888899999987653 1111
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc----cccccCCcc---eEEEE
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~----~~~l~~~~w---~~vIv 434 (1104)
.+..-.. .+........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000 000000000000 000000033444444332 122334456 79999
Q ss_pred cCcccccCcc---------cHHHHHHHhccc--------ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCC
Q 001302 435 DEGHRLKNKD---------SKLFSSLKQYST--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1104)
Q Consensus 435 DEaHrlkn~~---------s~~~~~l~~l~~--------~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~ 488 (1104)
||+|.+.+.. ...+..+..... -...++++||.+....+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 233333333221 12347899999999888888777777766665
No 216
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.59 E-value=0.0097 Score=65.31 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=42.3
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
..+|-||-.|...|..+|||||+|-.--..|||.+..|-. ..+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 3688999999888999999999999999999999988743 6678888763
No 217
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.42 E-value=0.14 Score=63.91 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p~~~vv 362 (1104)
..|-+.|..+|.... ......++.-..|+|||.+++.++..+...+. ++||++|.+. +.+....+..- +.+++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 468999999997652 34467888999999999999998888776543 8999999654 56666666542 34444
Q ss_pred EE
Q 001302 363 MY 364 (1104)
Q Consensus 363 ~~ 364 (1104)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 44
No 218
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.22 E-value=0.0081 Score=70.89 Aligned_cols=83 Identities=29% Similarity=0.700 Sum_probs=56.1
Q ss_pred cccccCC-----CCeeecC--CCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcCCCCCccccccc
Q 001302 54 CQACGES-----ENLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSK 126 (1104)
Q Consensus 54 C~~C~~~-----~~l~~C~--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~~~~~~~~~~~~ 126 (1104)
|-||.+. ..|+.|| .|.-+.|..|. .+..+|.|.|||..|.....- .-+.|.+.|-..+.-+-..
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqera--arvrCeLCP~kdGALKkTD---- 79 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERA--ARVRCELCPHKDGALKKTD---- 79 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhh--ccceeecccCcccceeccc----
Confidence 7789763 2399998 49999999999 889999999999999863211 1245556666554311111
Q ss_pred chhhhhhhhhhcCcccccc-cccchHhHH
Q 001302 127 QIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1104)
Q Consensus 127 ~~~~~eylVKwk~~Sy~h~-~W~~~~~l~ 154 (1104)
=-||.|.-| -+|||..+-
T Consensus 80 ----------n~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 80 ----------NGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred ----------CCCceEEEEEeeccceeec
Confidence 025777766 567776553
No 219
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.21 E-value=0.02 Score=56.94 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.8
Q ss_pred eeecCCCCCccccCcCCCCCCCC------------------CCCCCccCcCC
Q 001302 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1104)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~l~~~------------------p~~~W~C~~C~ 96 (1104)
|++|..|.|+||+.+|+|+-... .+.+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 99999999999999997763211 14579999994
No 220
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.00 E-value=0.0041 Score=46.19 Aligned_cols=34 Identities=35% Similarity=0.948 Sum_probs=19.3
Q ss_pred CCeeecCCCCCccccCcCCCCCCCCCCC-CCccCcCC
Q 001302 61 ENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1104)
Q Consensus 61 ~~l~~C~~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~ 96 (1104)
+.|+.|+.|.-.+|..|. .+...|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 358999999999999999 66666665 79998884
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.00 E-value=0.18 Score=64.11 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E 351 (1104)
+..|.+-|.+++..+ ..++-.+|.-..|+|||.++-+++..+...+ ..++++++|+..-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999766 3456789999999999988877777665543 2478889998766654443
No 222
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.90 E-value=0.044 Score=65.07 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER 350 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~ 350 (1104)
..|-+-|..++.+.. ....-.++--+.|+|||.+..-++..+...+ ..+||.+|... +.|-..
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHH
Confidence 457889999998763 2235577888999999999988888887665 58999999654 566554
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.79 E-value=0.25 Score=48.35 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1104)
+...++.-+.|.|||..+-.++..+... ..+++++.......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~ 60 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE 60 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhh
Confidence 6678899999999998777777666422 23555554444333
No 224
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.79 E-value=0.028 Score=71.15 Aligned_cols=143 Identities=22% Similarity=0.290 Sum_probs=93.0
Q ss_pred cccccccCCCCCCCCCCCcHHHHHHHHHH--------------------HHhhcCCCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 269 KEFQQYEHSPEFLSGGSLHPYQLEGLNFL--------------------RFSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 269 ~~~~~~~~~P~~~~~~~L~~yQ~~gv~wl--------------------~~~~~~~~~~ILademGlGKTiqai~~l~~l 328 (1104)
-.|..+..+-.+.+.+.|.+.|-.-+.-| ...+..+.+++++...|+|||+.|-..+ +
T Consensus 1104 vsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~--l 1181 (1674)
T KOG0951|consen 1104 VSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELAL--L 1181 (1674)
T ss_pred cchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHh--c
Confidence 34455544444555555666665443333 1234567889999999999998763322 2
Q ss_pred hcCCCCceEEEeCcccH-----HHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 001302 329 FGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1104)
Q Consensus 329 ~~~~~~p~LIV~P~s~l-----~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1104)
.....+.+.-++|...+ .-|.+-|... .+..++...|...-...+
T Consensus 1182 ~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl----------------------------- 1231 (1674)
T KOG0951|consen 1182 RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL----------------------------- 1231 (1674)
T ss_pred CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH-----------------------------
Confidence 34556689999998766 4588888877 477777777765432211
Q ss_pred cccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccH
Q 001302 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSK 446 (1104)
Q Consensus 404 ~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~ 446 (1104)
..+-+|+|.|++....-. ... .-++.|+||.|-+.+...+
T Consensus 1232 ~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g~ 1271 (1674)
T KOG0951|consen 1232 LQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYGA 1271 (1674)
T ss_pred hhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCCc
Confidence 235689999999875432 222 3578999999999865443
No 225
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.65 E-value=0.2 Score=61.95 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH----HHHHHHHhcC---------C------------------
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------------ 332 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa----i~~l~~l~~~---------~------------------ 332 (1104)
.++||-|+.-+..++.......+|+|-.++|+|||+.- +|+..++... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 56799999999999999999999999999999999874 3444444310 0
Q ss_pred --------CC-ceEEEeCc--ccHHHHHHHHHHHcCCCeEEEE
Q 001302 333 --------IS-PHLVVAPL--STLRNWEREFATWAPQMNVVMY 364 (1104)
Q Consensus 333 --------~~-p~LIV~P~--s~l~qW~~E~~~~~p~~~vv~~ 364 (1104)
.+ |.++.+-. +-|.|-.+|+.+..-..+.+++
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 01 45666663 3478889999886533444443
No 226
>PLN03025 replication factor C subunit; Provisional
Probab=94.64 E-value=0.4 Score=54.91 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.+.+|.-+.|+|||..+.+++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999999998887543
No 227
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.58 E-value=0.08 Score=56.62 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 282 ~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
.+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-+++.++..+..=+-+|||++++.+-..-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 3567999999999888654 567899999999999999999999988888777788999999998877666543
No 228
>PRK04296 thymidine kinase; Provisional
Probab=94.56 E-value=0.092 Score=55.31 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 56788999999999999888776543 36677655
No 229
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.28 E-value=0.3 Score=60.34 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCC----CceEEEeCcccH
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 345 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~----~p~LIV~P~s~l 345 (1104)
+.|..++... ..+.-.+|.-..|+|||.++..++..+..... ..+++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998655 34577899999999999998888877754321 368999997544
No 230
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.70 E-value=0.22 Score=58.97 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.6
Q ss_pred EcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHH
Q 001302 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLR 346 (1104)
Q Consensus 310 ademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~ 346 (1104)
-+.+|+|||+++.++|.+++..+...+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHH
Confidence 467999999999999999999998899999884 4443
No 231
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.47 E-value=0.76 Score=57.29 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 291 LEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 291 ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
...++.|...+..++ ..||.-.-|+|||..+..|...|...
T Consensus 22 e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 22 EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 344444444344432 34889999999999999999888643
No 232
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.43 E-value=0.23 Score=57.50 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4455677777776666 47889999999999999999998764
No 233
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.22 E-value=0.75 Score=53.78 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=36.6
Q ss_pred cceEEEEcCcccccCccc---HHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001302 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s---~~~~~l~~l~~--~~rllLTgTPlqN~~~EL~~ll~fL~p 483 (1104)
..++||||++.+...... .+...+..... ...|.|+||--++.+.+++.-...+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 468999999999864332 23333333332 356889999888888877766655443
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.20 E-value=0.2 Score=55.55 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..+.+|.-+.|+|||..|-++...+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3457899999999999998887776543
No 235
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.10 E-value=0.29 Score=60.61 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC---CCceEEEeCcccHHH
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRN 347 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~q 347 (1104)
.-+.|..++.-. ..+.-++|.-..|+|||.++..++..+.... ...+++++|+.--..
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH
Confidence 458999998644 3466789999999999999888888775532 236888899765433
No 236
>PRK06526 transposase; Provisional
Probab=93.09 E-value=0.29 Score=53.95 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHH
Q 001302 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 291 ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
+.+.+|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ +...|..++.
T Consensus 89 l~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 89 LGTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred HhcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 3344666 56788999999999999999999888766543 44443 3345655554
No 237
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.05 E-value=0.53 Score=54.14 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 293 gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3344444444554 689999999999999999998886543
No 238
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=0.38 Score=57.29 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|......++ ..|+.-+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3344444433334433 35899999999999999998887653
No 239
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.87 E-value=5.2 Score=48.84 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=46.7
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCcEEEEecCCC-----hHHHHHHHHHHccC---CCCceEEEeecCcccccccccC--
Q 001302 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT-- 695 (1104)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~-----~~~R~~~i~~Fn~~---~~~~~v~Llstragg~GINL~~-- 695 (1104)
-|++|...-..|..+...+...|+- .+|.|.-+ ..--.++++.|... +.+.+.|-+-..-.++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 4788887777888888777755541 12222211 00034556666421 1122223333444589999986
Q ss_pred CCEEEEECCCCC
Q 001302 696 ADTVIIYDSDWN 707 (1104)
Q Consensus 696 ad~VIi~D~~wN 707 (1104)
+..||+.-.|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 888999888873
No 240
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.78 E-value=0.045 Score=67.26 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=61.7
Q ss_pred cccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcCCCCCcccccccchh
Q 001302 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1104)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~~~~~~~~~~~~~~~ 129 (1104)
+..-|.+|..++.+.+|+.|++.||..|+-|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 455688899999999999999999999999998888888888887763
Q ss_pred hhhhhhhhcCcccccccccchHh
Q 001302 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1104)
Q Consensus 130 ~~eylVKwk~~Sy~h~~W~~~~~ 152 (1104)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 13799999999999999999874
No 241
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.56 E-value=0.4 Score=46.39 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
+...+|.-++|+|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45678999999999999988877765543 356777665554433
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=1.4 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..||.-..|+|||..+..++..|..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4588999999999999999998865
No 243
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.87 E-value=1.1 Score=53.25 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=35.3
Q ss_pred cceEEEEcCcccccCcccH---HHHHHHh--cccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001302 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s~---~~~~l~~--l~~~~rllLTgTPlqN~~~EL~~ll~fL~p 483 (1104)
.+++||||-+-+....... +...+.. ......|+|++|+-++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998775443222 2222221 122457899999877777777777766554
No 244
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.61 E-value=0.65 Score=52.46 Aligned_cols=71 Identities=20% Similarity=0.158 Sum_probs=41.7
Q ss_pred cccccCCCCCCCCCCCcH-HHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHH-hcCC-CCceEEEeCcc
Q 001302 271 FQQYEHSPEFLSGGSLHP-YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-ISPHLVVAPLS 343 (1104)
Q Consensus 271 ~~~~~~~P~~~~~~~L~~-yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l-~~~~-~~p~LIV~P~s 343 (1104)
+..+...+....|...+. +|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+- ...+ ..+++|-=|.-
T Consensus 213 i~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 213 ILLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred EEecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 333444555566655444 88888876621 223346788899999999887754433 2222 23555544443
No 245
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=91.59 E-value=0.81 Score=45.68 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHccCCCCceEEEeecCcccccccccC--CCEEEEECCCC
Q 001302 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1104)
Q Consensus 660 ~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~--ad~VIi~D~~w 706 (1104)
..+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 33 ~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44578899999865432 36787777999999985 67899987665
No 246
>PRK08181 transposase; Validated
Probab=91.19 E-value=1.7 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
+..-|..++..+......+.+.+|.-+.|+|||..+.++...+...+ .+++.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 45577777654422235788899999999999999999888776653 244443
No 247
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.12 E-value=0.38 Score=54.08 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCC---CceEEEeC
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVAP 341 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~---~p~LIV~P 341 (1104)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 446889999999999999888877765432 35554443
No 248
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.86 E-value=0.79 Score=45.79 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.6
Q ss_pred EEEecCCChHHHHHHHHHHccCCCCceEEEeecCc--ccccccccC--CCEEEEECCCC
Q 001302 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1104)
Q Consensus 652 ~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra--gg~GINL~~--ad~VIi~D~~w 706 (1104)
..+.+... .+...+++.|+......-.+|+++.. .++|||++. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444432 34578889998643310124555555 799999985 68899987775
No 249
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.65 E-value=1.5 Score=47.31 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=29.7
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~q 347 (1104)
..+.+.+|.-+.|+|||..+.++.......+ .+ ++.++.+.+..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~-~~~i~~~~~~~ 79 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERG-KS-AIYLPLAELAQ 79 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEeHHHHHH
Confidence 3456788999999999999988887765432 23 34445444443
No 250
>CHL00181 cbbX CbbX; Provisional
Probab=90.61 E-value=0.5 Score=53.20 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
+.+.+|.-+.|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4457899999999999998888877654
No 251
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.59 E-value=2.9 Score=47.53 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
+.+|.-+.|+|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999998888877543
No 252
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.59 E-value=0.35 Score=59.47 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=96.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc-cHHHHHHH-HHHHcCCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWERE-FATWAPQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~qW~~E-~~~~~p~~~v 361 (1104)
....|||.+-++-|... .-..+.+.-..-+|||..++.++.+.....++|+|+|.|.. ....|..+ |.-..
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999988766221 24567788888999999999999999988889999999964 44556533 33221
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc-
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL- 440 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl- 440 (1104)
..+...+..+... . .+..+..+... ....-.+.++... -...|.+....+|++||..+.
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~k--~f~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILYK--RFPGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhhe--ecCCCEEEEEeCC----CCcccccCCcCEEEEechhhcc
Confidence 1111111111110 0 00000000000 0011123333322 235678888999999999988
Q ss_pred ---cCcccHHHHH---HHhcccccEEEEecCCCCCCHHHHHHH
Q 001302 441 ---KNKDSKLFSS---LKQYSTRHRVLLTGTPLQNNLDELFML 477 (1104)
Q Consensus 441 ---kn~~s~~~~~---l~~l~~~~rllLTgTPlqN~~~EL~~l 477 (1104)
++.......+ ...+....++++..||.......+..+
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 2333333333 344556788999999976654444433
No 253
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.56 E-value=1.4 Score=48.86 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcCCC-cEEEEcCCCchHHHHHHHHHHHHh
Q 001302 288 PYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~-~~ILademGlGKTiqai~~l~~l~ 329 (1104)
+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 455667777766555544 477899999999988877666553
No 254
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.43 E-value=0.62 Score=35.77 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~ 1012 (1104)
||..+...|++++.+||..+ |..|+..+.++|..+++.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~~--w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKNN--WEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcCC--HHHHHhHcCCCCHHHHHHHHHH
Confidence 67788889999999999634 7899999999999999988643
No 255
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.34 E-value=1.2 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..++.-+.|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999887654
No 256
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=90.32 E-value=0.58 Score=37.21 Aligned_cols=43 Identities=12% Similarity=0.394 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhcc-CCCHHHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1012 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~-~Ks~~ev~~y~~~ 1012 (1104)
-||..+-..|++++.+||.+ +|..||..+. ++|..+++.+...
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 37778888999999999986 4789999999 9999999976543
No 257
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.32 E-value=0.15 Score=60.68 Aligned_cols=47 Identities=32% Similarity=0.805 Sum_probs=39.2
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCC-CCCCCCCccCcCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-APPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~ 97 (1104)
-..|.+|..+|++++|+.|+.+||..|..+++. +.+...|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 577999999999999999999999999999886 22345677777754
No 258
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=90.24 E-value=3.3 Score=48.99 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=91.4
Q ss_pred hHHHHH-HHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 608 GKLQLL-DKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 608 ~Kl~~L-~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
.++... ..+|+.+. ....++|||...---.=.|..+|...++.|+.++--++..+-..+-..|..+... ++|.+-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 344443 34777776 3346899998765555568889999999999999999999999999999876543 456666
Q ss_pred Ccc-cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCC----CCeEEEEEEeeC
Q 001302 685 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1104)
Q Consensus 685 rag-g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ----~k~V~Vyrlvt~ 735 (1104)
|+- =.=..+.++.+||+|.+|-+|+-|...+.-...-.+ ...+.|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 653 344567789999999999999999988765544333 234555555654
No 259
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.16 E-value=1.3 Score=50.69 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.++|+|.....-+...-.-...-++..+.|+|||..|..++..+.-.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36889988876665542223345688999999999999999998764
No 260
>PHA02533 17 large terminase protein; Provisional
Probab=90.01 E-value=1.8 Score=53.04 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh-cCCCCceEEEeCc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPL 342 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~-~~~~~p~LIV~P~ 342 (1104)
..|+|+|..-+..|. .++-.++.-.=..|||..+.+++.++. ......+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 569999999887662 234456777888999998876554433 2333477888884
No 261
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.90 E-value=0.11 Score=61.80 Aligned_cols=98 Identities=26% Similarity=0.451 Sum_probs=56.6
Q ss_pred cccccccccCCCC-----eeecCCCCCccccCcCCCCCCCC-CCCCCccCcCCC-----CCCccccccccccccCcCCCC
Q 001302 50 KDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDCEMRPTVAGDS 118 (1104)
Q Consensus 50 ~~~~C~~C~~~~~-----l~~C~~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~-----~~~~iekil~wr~~p~~~~~~ 118 (1104)
...+|.+|+..|. |+.|..|...||.+|+.--+... -.+.|.||.|.. ..++..+.+.| .+....-+
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~C--k~cDvsyh 94 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLC--KRCDVSYH 94 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccc--cccccccc
Confidence 3567888886543 99999999999999996444332 245599999983 23556666665 22211110
Q ss_pred Ccc-cccccchhhhhhhhhhcCcccccccccc
Q 001302 119 DVS-KLGSKQIFVKQYLVKWKGLSYLHCTWVP 149 (1104)
Q Consensus 119 ~~~-~~~~~~~~~~eylVKwk~~Sy~h~~W~~ 149 (1104)
..- ....+...--.|+.||.-+=+-|..=+|
T Consensus 95 ~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lp 126 (694)
T KOG4443|consen 95 CYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLP 126 (694)
T ss_pred ccccCCccccccCcccccHHHHhhhhcccccc
Confidence 000 0000011112678888766665555333
No 262
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.69 E-value=2.2 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..|+....|+|||..|..++..+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999999999998888754
No 263
>PRK14974 cell division protein FtsY; Provisional
Probab=89.50 E-value=2.2 Score=49.00 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=24.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
-.++.-..|.|||.++..++..+...+. +++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecC
Confidence 3567889999999988888777765543 4545543
No 264
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.47 E-value=1.7 Score=54.17 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCc---EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 291 LEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 291 ~~gv~wl~~~~~~~~~---~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
-..+..|...+..++- .|+.-+.|+|||..|..|+..+...
T Consensus 22 e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 22 EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3444445444444432 4889999999999999998888653
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.46 E-value=2.8 Score=48.73 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
....|.-..|.|||.++..++..+...+. .++++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 34567889999999998888887765443 4444443
No 266
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=89.29 E-value=0.73 Score=36.00 Aligned_cols=44 Identities=14% Similarity=0.438 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILF 1013 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f 1013 (1104)
.|+..+...|++++.+||..+ |..|+..+.++|..+++.+...+
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNN--WEKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888899999999999744 78899999999999999886554
No 267
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.96 E-value=1.9 Score=52.23 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|...+..+ ...||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 444444554444444 368899999999999999998888643
No 268
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.95 E-value=1.6 Score=55.69 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.||.-+.|+|||..+..|+..+...
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCc
Confidence 3799999999999999999888653
No 269
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=4.2 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..||.-..|+|||..|..++..+...
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 46899999999999999988887543
No 270
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.72 E-value=2.6 Score=49.22 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC--c-EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~--~-~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|...+..|...+..++ + .++.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4445555555444432 3 489999999999999999888753
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.65 E-value=2.7 Score=45.88 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.+...+|.-+.|+|||-.+.++...+...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34568899999999998887777766543
No 272
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.43 E-value=3.9 Score=46.68 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
.++|+|......|...+..++ ..++..+.|+||+..|.+|+..++...
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999888877766554 467899999999999999999987654
No 273
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.37 E-value=4.1 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.|+.-..|+|||..|..++..+...
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4899999999999999998888653
No 274
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.35 E-value=3.7 Score=46.81 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.9
Q ss_pred ceEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCC
Q 001302 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~--s~~~~~l~~l~~~~rllLTgTPl 467 (1104)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344455667888888653
No 275
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.29 E-value=4 Score=48.26 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|...+.++ ...|+.-+.|+|||..|..++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444455545544 236789999999999999999888653
No 276
>PRK08116 hypothetical protein; Validated
Probab=87.83 E-value=3.1 Score=46.31 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
+.+.+|.-+.|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHH
Confidence 44688999999999999999999988763 366555433444433
No 277
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=87.77 E-value=0.32 Score=55.81 Aligned_cols=51 Identities=25% Similarity=0.587 Sum_probs=36.6
Q ss_pred ccccccccccC-----CCCeeecCCCCCccccCcCCCCC-CCCCC-------CCCccCcCCCCC
Q 001302 49 AKDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPL 99 (1104)
Q Consensus 49 ~~~~~C~~C~~-----~~~l~~C~~C~~~~H~~Cl~p~l-~~~p~-------~~W~C~~C~~~~ 99 (1104)
....+|.||-. .|+++.||.|+-..|-.|..-.- ..+|+ ..|||-.|....
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 34458999964 35699999999999999984331 12232 469999998643
No 278
>PF13173 AAA_14: AAA domain
Probab=87.71 E-value=3.4 Score=40.31 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHh
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~ 329 (1104)
+.-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578899999999998888887765
No 279
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.68 E-value=1.5 Score=53.63 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCc-ccHHHHHHH----HHHHcCCCeEEEEecChhHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~-s~l~qW~~E----~~~~~p~~~vv~~~g~~~~r~~i~~ 376 (1104)
+.+-.++.-.==-|||..+.+.+..+.....+ .+++++|. ++...--.| +++|+|...+....|. .+ .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 34445666677789999877777766644334 89999993 444444444 4567765444333331 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHH--Hhc
Q 001302 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL--KQY 454 (1104)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l--~~l 454 (1104)
+. ++.+ .+--+.+.|- .....++...++++||||||-++.. .+...+ ..-
T Consensus 327 i~--f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~ 378 (738)
T PHA03368 327 FS--FPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQ 378 (738)
T ss_pred EE--ecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhc
Confidence 11 1110 0112222211 2334566778999999999999763 222222 112
Q ss_pred ccccEEEEecC
Q 001302 455 STRHRVLLTGT 465 (1104)
Q Consensus 455 ~~~~rllLTgT 465 (1104)
.....|.+|.|
T Consensus 379 ~n~k~I~ISS~ 389 (738)
T PHA03368 379 TNCKIIFVSST 389 (738)
T ss_pred cCccEEEEecC
Confidence 34456777755
No 280
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.62 E-value=4.2 Score=45.18 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcC--CCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 289 yQ~~gv~wl~~~~~~--~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
+|...|+-|...... ..+.++.-+.|+|||-++++|...|...
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 677777766554433 4457888999999999999999998653
No 281
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.54 E-value=3.4 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~ 330 (1104)
.|+.-+.|+|||..|..++..+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999988864
No 282
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.48 E-value=3.2 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..||.-+.|+|||..|-+++..+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3589999999999999988887754
No 283
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.39 E-value=4 Score=50.47 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCC--c-EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~--~-~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|...+..|...+..++ + .|+.-..|+|||..|..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4444444544444432 3 478999999999999999988864
No 284
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.21 E-value=4.1 Score=49.08 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcccH
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s~l 345 (1104)
+..+|.-+.|+|||..+-++...+.....+ .++.+.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 447899999999999998888887765434 34444333333
No 285
>PF13245 AAA_19: Part of AAA domain
Probab=87.17 E-value=1.7 Score=38.43 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcC---CCCceEEEeCcccHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~---~~~p~LIV~P~s~l~q 347 (1104)
+.-.++.-..|+|||.+++..+.++... ...++||++|.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 3445668999999999998888888742 2348999999765543
No 286
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=86.94 E-value=4 Score=45.67 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=28.2
Q ss_pred ccccCCcceEEEEcCcccc-cCcccHH---HHHHHhccccc--EEEEecCC
Q 001302 422 ASLKPIKWQCMIVDEGHRL-KNKDSKL---FSSLKQYSTRH--RVLLTGTP 466 (1104)
Q Consensus 422 ~~l~~~~w~~vIvDEaHrl-kn~~s~~---~~~l~~l~~~~--rllLTgTP 466 (1104)
..|..+.-.+|||||.|++ .+...+. ..+|+.+.... -+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4566677889999999996 4443333 33444444333 35677876
No 287
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.90 E-value=1.7 Score=52.62 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcccHHH-----HHHHHHHHcCCCeEEEEecChhHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRN-----WEREFATWAPQMNVVMYVGTSQARNIIRE 376 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s~l~q-----W~~E~~~~~p~~~vv~~~g~~~~r~~i~~ 376 (1104)
+.-.+.| -+=-=|||...+.+|..++..-.+ .+..|+...-+.+ -...+.+|+|.-+++.-.|+.-.
T Consensus 202 QkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~------ 274 (668)
T PHA03372 202 QKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS------ 274 (668)
T ss_pred ccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE------
Confidence 3333433 366678999999999888876555 7888888433322 33445789987766433221100
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhccc
Q 001302 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST 456 (1104)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~ 456 (1104)
+..+ ..+.-++..| ......++.-.|++++|||||-++...-...--+...+.
T Consensus 275 --~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~ 327 (668)
T PHA03372 275 --IDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNT 327 (668)
T ss_pred --EecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccC
Confidence 0011 0111122222 123456777789999999999987643332222333344
Q ss_pred ccEEEEecC
Q 001302 457 RHRVLLTGT 465 (1104)
Q Consensus 457 ~~rllLTgT 465 (1104)
...+.+|.|
T Consensus 328 ~KiIfISS~ 336 (668)
T PHA03372 328 TKIIFISST 336 (668)
T ss_pred ceEEEEeCC
Confidence 556667655
No 288
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.47 E-value=2.7 Score=48.96 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHh-hc--CCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 286 LHPYQLEGLNFLRFS-WS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~-~~--~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
=|..|++.+.-.+.. .. ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 377888877443332 22 2356889999999999999888887753
No 289
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.46 E-value=5.5 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.++.-+.|.|||..|..++..+...
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3789999999999999999888653
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.32 E-value=5.1 Score=49.73 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|-..++.|...+..+ ...||.-..|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 334444444444444 357889999999999999999988654
No 291
>PRK08727 hypothetical protein; Validated
Probab=86.23 E-value=3.5 Score=44.94 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
...+|.-+.|+|||-.+.++...+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3478999999999988888877766553
No 292
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.10 E-value=5.8 Score=47.65 Aligned_cols=47 Identities=15% Similarity=-0.030 Sum_probs=30.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcccHHHHHHH
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s~l~qW~~E 351 (1104)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+......
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 457799999999998888887777654333 55555554444333333
No 293
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.98 E-value=5 Score=46.78 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
|-.++..|...+..++ .-++.-+.|+|||..|.+|+..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5556666666666543 467899999999999999999998643
No 294
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.93 E-value=5.3 Score=40.86 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcCCC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERI 333 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~~~ 333 (1104)
|.+.+..|...+..+ ..-|+..+.|.||+..|..++..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 455556665555554 23588899999999999999999987643
No 295
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.88 E-value=5 Score=47.57 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=26.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEE
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVV 339 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV 339 (1104)
..+|.-+.|+|||..+-++...+.....+ .++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 46799999999999998888887765433 45554
No 296
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=85.80 E-value=5.1 Score=51.31 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1104)
+..|.+-|.+++..+. ..+.-.+|....|+|||.+.-+++..+... ..++++++|.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~-g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA-GYRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEeCcHHHH
Confidence 3578999999998763 224568899999999998876665555443 24788889976543
No 297
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=85.70 E-value=3.8 Score=51.79 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHHHHHHHHHcCCCeEEE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW~~E~~~~~p~~~vv~ 363 (1104)
.|..-|++|+-.. ........|+. =.|+|||-+...++..|...+. .+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~--L~aedy~LI~G-MPGTGKTTtI~~LIkiL~~~gk-kVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA--LAAEDYALILG-MPGTGKTTTISLLIKILVALGK-KVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH--Hhccchheeec-CCCCCchhhHHHHHHHHHHcCC-eEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997433 22233344554 4799999988888887776653 5565554 566777655555432 22 22
Q ss_pred EecChhHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccC
Q 001302 364 YVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1104)
Q Consensus 364 ~~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn 442 (1104)
-.|....- ..++++-.. ...... -+..-........||.+|--.+. ...|..-.||++|||||..+.-
T Consensus 742 RLG~~~kih~~v~e~~~~-~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLT-NETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcc-cccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 23433221 122332210 000000 00000000122345555533222 3345556799999999976533
Q ss_pred cccHHHHHHHhcccccEEEEecCCCC
Q 001302 443 KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1104)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTPlq 468 (1104)
+ -.|-.+....++.|-|-+.|
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred c-----hhhhhhhhcceEEEeccccc
Confidence 2 23444566778888887644
No 298
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.69 E-value=2 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=24.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.+|.-.+|.|||.++.-+++++...+ .++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-KKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-ccceeecC
Confidence 46788999999999988888887673 34444443
No 299
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=85.55 E-value=0.38 Score=48.12 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=33.6
Q ss_pred ccccccC------CCCeeecCCCCCccccCcCCCCCCC------CCCCC--CccCcCCCCC
Q 001302 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLKA------PPSGS--WRCPECVSPL 99 (1104)
Q Consensus 53 ~C~~C~~------~~~l~~C~~C~~~~H~~Cl~p~l~~------~p~~~--W~C~~C~~~~ 99 (1104)
.|.+|+. .|.|+.|.+|..+||..||.|--.. +..++ -.|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 3778853 2459999999999999999776432 32333 4788888644
No 300
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=85.53 E-value=11 Score=46.46 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=73.0
Q ss_pred hhhHHHH-HHHHHHHHHHhCCeEEEEecch----hHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEE
Q 001302 606 SSGKLQL-LDKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1104)
Q Consensus 606 ~S~Kl~~-L~~lL~~l~~~g~kvLIFsq~~----~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~ 680 (1104)
.|||-.+ +..++. ..+.|..+.+-..-- ...+-+.++|...|+.+..++|++++..|.+++.+..++..+ +
T Consensus 293 GSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---i 368 (677)
T COG1200 293 GSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---I 368 (677)
T ss_pred CCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---E
Confidence 4777554 444444 456788888777642 345677888888899999999999999999999999776655 8
Q ss_pred EeecCcc-cccccccCCCEEEEECC
Q 001302 681 LLSTRAG-GLGINLATADTVIIYDS 704 (1104)
Q Consensus 681 Llstrag-g~GINL~~ad~VIi~D~ 704 (1104)
++.|.|+ -..+++...-.||+=+.
T Consensus 369 vVGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EEEcchhhhcceeecceeEEEEecc
Confidence 9999996 77888888888887553
No 301
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=85.21 E-value=6.5 Score=48.61 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
|+=++-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|.
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~ 225 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQR 225 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCC
Confidence 44455566666666666666655 6899999887766666554222478999994
No 302
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.16 E-value=3.5 Score=51.15 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|...+..++ -.|+.-..|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444445544444433 24889999999999999999888653
No 303
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.16 E-value=5.4 Score=45.62 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
++|+|...-.-|...+..++ .-++.-+.|+||+..|..|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887777776666643 345789999999999999999987643
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=85.14 E-value=6.9 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.||.-..|+|||..+..|...|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5899999999999999999988653
No 305
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.86 E-value=8 Score=46.75 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
...|+.-..|+|||..|..++..+..
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcC
Confidence 45789999999999999888877754
No 306
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.66 E-value=6.2 Score=49.14 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCc---EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 290 QLEGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~~---~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|-..+..|...+..+.- .|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44555555554454432 388999999999999999988853
No 307
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.01 E-value=6.5 Score=47.98 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=72.4
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh-CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEee
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Lls 683 (1104)
..|||-.+...++......|.++||.+........+.+.|.. .|..+..++|.++..+|..+..+...++.. +++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 468999998888888888899999999998877766666654 377899999999999998877766544333 6777
Q ss_pred cCcccccccccCCCEEEEECC
Q 001302 684 TRAGGLGINLATADTVIIYDS 704 (1104)
Q Consensus 684 tragg~GINL~~ad~VIi~D~ 704 (1104)
|+..- =+-+.....||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 77632 234556777777653
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.87 E-value=5.1 Score=46.78 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.7
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~ 352 (1104)
..+.-.+|.-++|.|||..++.++..+...+ +++|+|.-.....|.....
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHH
Confidence 4455678999999999999998887775542 4788887655555544333
No 309
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.74 E-value=6.3 Score=45.33 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCCC--c-EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEe
Q 001302 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1104)
Q Consensus 289 yQ~~gv~wl~~~~~~~~--~-~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~ 365 (1104)
.|...+..|...+..++ + -++.-+-|.|||..|..++..+........ .|-........-.....|+++.+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~---~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 45555555655555443 3 488999999999999999998875431100 02222233333333445677666554
Q ss_pred cC
Q 001302 366 GT 367 (1104)
Q Consensus 366 g~ 367 (1104)
|.
T Consensus 87 ~~ 88 (329)
T PRK08058 87 GQ 88 (329)
T ss_pred cc
Confidence 43
No 310
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.54 E-value=18 Score=44.36 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..|+.-+.|+|||..|-.++..+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999999998888754
No 311
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.54 E-value=7.2 Score=47.51 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC--c-EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~--~-~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|......+. + .++.-+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3344444444434433 2 3899999999999999999888643
No 312
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=83.23 E-value=7.4 Score=50.96 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=41.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1104)
|..|.+-|.+++..+. ..+.-++|.-..|+|||.+.-+ +..++......++.++|...-.
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHHH
Confidence 4579999999998663 2234578999999999987443 4333333333788888876543
No 313
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.18 E-value=8.4 Score=47.58 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcccHHHH
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s~l~qW 348 (1104)
..+|.-..|+|||..+-++..++.....+ .++.+.....+..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 47889999999999888888877654333 44444433434333
No 314
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.07 E-value=7.5 Score=45.60 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=31.0
Q ss_pred ceEEEEcCcccccCccc---HHHHHHHhcc-cccEEEEec--CCCCCC--HHHHHHHHH
Q 001302 429 WQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG--TPLQNN--LDELFMLMH 479 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s---~~~~~l~~l~-~~~rllLTg--TPlqN~--~~EL~~ll~ 479 (1104)
-++++||-.|.+.+... .++-.+..+. ....|+||+ +|-+-+ ..+|.+-+.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 47899999999987643 3444444443 345899998 674333 234444333
No 315
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.98 E-value=6.9 Score=48.93 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|...+..+ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 444455554444444 345889999999999999999988653
No 316
>PRK05580 primosome assembly protein PriA; Validated
Probab=82.52 E-value=8.6 Score=48.78 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh-CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
.|||......++......|.++||.+........+.+.|.. .|..+..++|+++..+|.........+... ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 57898888777777777899999999998887766666654 478899999999999998887777654433 67888
Q ss_pred CcccccccccCCCEEEEECC
Q 001302 685 RAGGLGINLATADTVIIYDS 704 (1104)
Q Consensus 685 ragg~GINL~~ad~VIi~D~ 704 (1104)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7542 245667777877764
No 317
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.37 E-value=0.82 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.5
Q ss_pred ccccccccC----CCCeeecCCCCCccccCcCCC
Q 001302 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1104)
Q Consensus 51 ~~~C~~C~~----~~~l~~C~~C~~~~H~~Cl~p 80 (1104)
...|.+|+. +++++.|..|+..||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 356999985 577999999999999999843
No 318
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.37 E-value=0.7 Score=47.84 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=26.0
Q ss_pred ccccEEEccHHHHhhccc--ccc--CCcceEEEEcCcccccC
Q 001302 405 IKFDVLLTSYEMINLDSA--SLK--PIKWQCMIVDEGHRLKN 442 (1104)
Q Consensus 405 ~~~dVvitsye~l~~~~~--~l~--~~~w~~vIvDEaHrlkn 442 (1104)
...||||++|..+..... .+. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 567999999999875422 121 23446899999999854
No 319
>PRK04132 replication factor C small subunit; Provisional
Probab=82.10 E-value=5.5 Score=51.08 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=30.8
Q ss_pred cceEEEEcCcccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHHH
Q 001302 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~-~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ 476 (1104)
++.+|||||||++-.. ...+.+.+.......+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4679999999999532 223344444445677888888875444444443
No 320
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.86 E-value=11 Score=42.98 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
.++|+|...-..+...+..++ .-++..+.|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478899888877776665544 467889999999999999999987653
No 321
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=81.79 E-value=0.49 Score=42.22 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=29.0
Q ss_pred cccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 54 C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
|..|.-+|+ ++.+. |...||+.|+..-+... ...=.||-|..+
T Consensus 35 Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 334444444 44444 99999999998777664 233489999864
No 322
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.64 E-value=8.3 Score=46.76 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC--c-EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~--~-~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|...+..|......+. + .++.-+.|.|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444544444432 3 368999999999999888887753
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.63 E-value=15 Score=44.19 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P 341 (1104)
...+|.-+.|+|||..+-++...+.....+ .++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999988888887765444 4555543
No 324
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.30 E-value=6.9 Score=49.32 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=87.8
Q ss_pred EeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHH
Q 001302 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1104)
Q Consensus 536 v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~ 615 (1104)
....+++.|...+..|... + -+.+++|+.++. .|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~---------------------~--~~~~~~Ll~GvT---------------GSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSS---------------------L--GGFAPFLLDGVT---------------GSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHh---------------------c--ccccceeEeCCC---------------CCcHHHHHHH
Confidence 3467888888888876443 1 245788887754 7999999999
Q ss_pred HHHHHHHhCCeEEEEecchhHHHHHHHHHhhC-CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 616 lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
++.....+|+.+||...-+.....+.+.|..+ |.++..++++.+..+|...-.+...+.. .++|.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999888777766666543 7899999999999999998888865444 367777763
No 325
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=81.29 E-value=3.5 Score=46.54 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC---CCceEEEeCcccH
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTL 345 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l 345 (1104)
|.+-|..++++ ..+..++-...|+|||.+.+.-+.+++... +..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888763 356667777799999999998888877654 3489999997654
No 326
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.18 E-value=16 Score=42.61 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1104)
..+...+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 456677899999999999998888776433 3335555554
No 327
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=81.14 E-value=11 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..|+.-+.|+|||..|-.++..+...
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35679999999999999888877543
No 328
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=80.86 E-value=2.3 Score=44.25 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=32.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
.++.|.+|.-.+|+|||..|.+++..+...+ .+++.+.- ..+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~----~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITA----SDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH----HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeec----Cceecccc
Confidence 5678899999999999999999999888743 25565543 34445554
No 329
>PRK11054 helD DNA helicase IV; Provisional
Probab=80.86 E-value=7.3 Score=49.27 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC---CCceEEEeCcccHHHHHHH-HHHHcC--
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~---~~p~LIV~P~s~l~qW~~E-~~~~~p-- 357 (1104)
..|.+-|.++|. ...++.++....|+|||.+.++-+.+|.... ...+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~------~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVV------NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHh------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 358999999985 2334556666799999999999999988643 2389999998877776665 555443
Q ss_pred CCeEEEEecChhHHHHHHH
Q 001302 358 QMNVVMYVGTSQARNIIRE 376 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~ 376 (1104)
++.+.+||+- ...++++
T Consensus 269 ~v~v~TFHSl--al~Il~~ 285 (684)
T PRK11054 269 DITARTFHAL--ALHIIQQ 285 (684)
T ss_pred CcEEEeHHHH--HHHHHHH
Confidence 3344444432 3344444
No 330
>PRK09183 transposase/IS protein; Provisional
Probab=80.42 E-value=8 Score=42.87 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
++.++.|+ ..+.+.+|.-+.|+|||..+.++...+...+ ..++.+.
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~ 137 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTT 137 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 34444554 6788899999999999999988866654433 2455443
No 331
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.20 E-value=3.6 Score=43.77 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
-.+.|++-..|.|||..+.+++..|+..
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 3468999999999999998888887643
No 332
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.11 E-value=6.3 Score=43.52 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHH
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
-.++..+.-+...+..+.|.+|.-..|+|||..|+|+...+. ....+++++.-..++.+.+..+.
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 344454444444446888999999999999999999999998 33337777765666666555543
No 333
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=79.63 E-value=8.3 Score=41.93 Aligned_cols=42 Identities=33% Similarity=0.383 Sum_probs=28.3
Q ss_pred cCCC-cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 302 SKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 302 ~~~~-~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
..++ -+.+.-+.|+|||+..=+++..+-.. ...+|+.|+.++
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~ 90 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTL 90 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcch
Confidence 3444 46678899999999987555554322 244578887666
No 334
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=79.62 E-value=11 Score=46.70 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.|+.-+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5899999999999999999888643
No 335
>PRK06893 DNA replication initiation factor; Validated
Probab=79.59 E-value=12 Score=40.61 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
..+|.-+.|+|||-.+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999998888887765543
No 336
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.57 E-value=16 Score=43.66 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
...+++-..|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4467889999999999998888887655434444443
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.49 E-value=10 Score=47.32 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|...+..|...+..+ ..-|+.-+.|.|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445555565555543 336789999999999999999888653
No 338
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.40 E-value=7.9 Score=46.44 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=26.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
+..+|.-+.|+|||-.+-++...+...+ .+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEee
Confidence 4578999999999999888888876543 3555444
No 339
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.31 E-value=15 Score=40.91 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-c---ccHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWERE 351 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~---s~l~qW~~E 351 (1104)
.+....+.-..|+|||..+..++..+...+ ..+.+|.- . ..+.||...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHH
Confidence 345677888899999998877776665433 34444443 2 355666543
No 340
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=79.26 E-value=12 Score=43.05 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHhhcCC-CcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 286 LHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~-~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
++|+|...-+-|...-..- ...++.-+.|.|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678877766665542222 2355789999999999999999987653
No 341
>PRK05642 DNA replication initiation factor; Validated
Probab=78.78 E-value=9.9 Score=41.42 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.5
Q ss_pred eEEEEcCcccccCcc---cHHHHHHHhcc-cccEEEEecC
Q 001302 430 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 465 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~---s~~~~~l~~l~-~~~rllLTgT 465 (1104)
++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 579999999886543 23555555544 3567888887
No 342
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=78.70 E-value=7.4 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~ 327 (1104)
.-.+.||.-+.|+|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999876555543
No 343
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=78.70 E-value=4.9 Score=33.35 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCcc-hhhhchhcc-CC-CHHHHHHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1015 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~-~~~i~~~l~-~K-s~~ev~~y~~~f~~ 1015 (1104)
.+|+-+-..|+.|++.||.+++. -..|+..+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 36778889999999999987631 156776554 34 99999988877654
No 344
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=78.42 E-value=17 Score=45.82 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHH----HHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldi----L~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.|||-.+..-.+-.....|.+++|.+.....+.- +..++...|+++..++|+++..+|...++...++..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 5777655433333334568899999987665544 4455555689999999999999999999888765444 56
Q ss_pred eecCcc-cccccccCCCEEEEECCC
Q 001302 682 LSTRAG-GLGINLATADTVIIYDSD 705 (1104)
Q Consensus 682 lstrag-g~GINL~~ad~VIi~D~~ 705 (1104)
++|.+. -..+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 666653 445777788888876654
No 345
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=78.41 E-value=12 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.|+.-+.|.|||..|-.++..+...
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhccc
Confidence 4789999999999999998887653
No 346
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=78.39 E-value=18 Score=44.73 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..|+.-+.|+|||..|..++..+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45789999999999999999988654
No 347
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=78.27 E-value=13 Score=42.94 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.++|+|...-..|...+..++ .-+++-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877777766544 35689999999999999999999764
No 348
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.20 E-value=14 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..|+.-+.|+|||..|..++..+..
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccc
Confidence 4668999999999999999988864
No 349
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=78.15 E-value=1.6 Score=57.33 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.8
Q ss_pred cccccccccCCCC--eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
....|..|..+.. ++.|+.|...+|..|+.|++..++.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3467999987764 349999999999999999999999999999999864
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=78.09 E-value=18 Score=37.76 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
...+|.-+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999988754
No 351
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.78 E-value=11 Score=48.95 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhh--cCCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~--~~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|-.-+..++..+ ....|.||.-+.|.|||..+=+++..+...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 333455555432 345689999999999999987777776543
No 352
>PRK04195 replication factor C large subunit; Provisional
Probab=77.33 E-value=18 Score=44.01 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=28.7
Q ss_pred CcHHHHHHH-HHHHHhhcC---CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 286 L~~yQ~~gv-~wl~~~~~~---~~~~ILademGlGKTiqai~~l~~l 328 (1104)
.++.++..+ .|+ ..|.+ ....+|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 344555554 444 33433 4568999999999999888777765
No 353
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=77.25 E-value=3 Score=53.05 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=72.2
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CCCCceEEEeCcccH-----HHHHHHHHHHcCCCeEEEEecChhHHHHH
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~-~~~~p~LIV~P~s~l-----~qW~~E~~~~~p~~~vv~~~g~~~~r~~i 374 (1104)
++...+..+.+.+|.|||+.+-..+.+... ...+++.+|+|...+ ..|..-+.. |+++++-..|+....
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd--- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD--- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC---
Confidence 345667889999999999998554444444 444699999995433 446554432 466676666653221
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC----cceEEEEcCcccccCc
Q 001302 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1104)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~----~w~~vIvDEaHrlkn~ 443 (1104)
.......+++|||++..-......... ....+|+||.|-++..
T Consensus 1015 --------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112346789999999875443322222 2457999999988654
No 354
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=77.03 E-value=1 Score=50.27 Aligned_cols=21 Identities=52% Similarity=1.001 Sum_probs=19.9
Q ss_pred hhhhhhhcCcccccccccchH
Q 001302 131 KQYLVKWKGLSYLHCTWVPEK 151 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~ 151 (1104)
.+|||||+|+..-.+||.|+.
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee 84 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEE 84 (270)
T ss_pred ceeeeecCCCCCccccCCchh
Confidence 489999999999999999997
No 355
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=76.95 E-value=12 Score=44.16 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 287 HPYQLEGLNFLR-FSWS--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 287 ~~yQ~~gv~wl~-~~~~--~~~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
|+-|++-+.-.. .... ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666653332 2222 345689999999999999988888776543
No 356
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=76.94 E-value=8.2 Score=46.85 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.9
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
....+.+|.-+.|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 45677899999999999998888877643
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.08 E-value=32 Score=41.85 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=26.2
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCC-CceEEEe
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~-~p~LIV~ 340 (1104)
..++..+|.-..|.|||.++..++..+...+. ..+.+|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 34555667889999999998777776654432 3455443
No 358
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.90 E-value=13 Score=44.20 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHH
Q 001302 305 THVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l 328 (1104)
.+.||.-+.|+|||..+-.+...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887766543
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=75.65 E-value=9.5 Score=43.40 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCCc-EEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 303 ~~~~-~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
+... .+|..+.|+|||..|.+++..+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 3444 78899999999999999999998653
No 360
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.40 E-value=4.6 Score=38.92 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=25.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
.+|.-+.|+|||..+-.++..+. -+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cccccccccccc
Confidence 36778999999999888777751 256666665554
No 361
>CHL00206 ycf2 Ycf2; Provisional
Probab=75.19 E-value=8.3 Score=52.88 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.3
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
...+|++|.-++|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 456788899999999999887766642 2388777777777665
No 362
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=74.92 E-value=1.8e+02 Score=37.01 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=38.7
Q ss_pred CEEEEECCCCChhhHHHHHHhhHhhCCC---CeEEEEEEeeCCCHHHH--HHHHHHHHHHHHHHHhc
Q 001302 697 DTVIIYDSDWNPHADLQAMARAHRLGQT---NKVMIFRLITRGSIEER--MMQMTKKKMVLEHLVVG 758 (1104)
Q Consensus 697 d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~---k~V~Vyrlvt~~TvEe~--i~~~~~~K~~l~~~v~g 758 (1104)
..||+|+++-++-.- +-..+-. +...||.++..+|+||. ...+.+.|+...+++-.
T Consensus 546 ~yvi~y~~~~~~vRq------iEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre 606 (892)
T KOG0442|consen 546 RYVIMYESDLTFVRQ------IEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIRE 606 (892)
T ss_pred ceEEEEcCCCCceee------eeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhh
Confidence 458999998665442 2333333 45779999999999884 45577788888777753
No 363
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.49 E-value=11 Score=39.40 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=74.7
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH-HHHHHHH--cCCCeEEEEecChhHHHHHHHhh
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW-EREFATW--APQMNVVMYVGTSQARNIIREYE 378 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW-~~E~~~~--~p~~~vv~~~g~~~~r~~i~~~e 378 (1104)
...+..++....|-|||-.|+++.......+. +++||==.. ..| ..|.... .|++.+..+ |....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~-g~~~~-------- 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFIK--GAWSTGERNLLEFGGGVEFHVM-GTGFT-------- 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEec--CCCccCHHHHHhcCCCcEEEEC-CCCCc--------
Confidence 35677889999999999999998887766543 666652211 112 1222211 222222211 11000
Q ss_pred hcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCc----ccHHHHHHHhc
Q 001302 379 FYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQY 454 (1104)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~----~s~~~~~l~~l 454 (1104)
|.. .. ..-+. -.--+.+......+.+-.|++||+||.-..-+. ...+...|..-
T Consensus 88 ~~~-~~--------------------~~e~~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 145 (191)
T PRK05986 88 WET-QD--------------------RERDI-AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR 145 (191)
T ss_pred ccC-CC--------------------cHHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC
Confidence 000 00 00000 000112222344566678999999998665442 23444555444
Q ss_pred ccccEEEEecCCCCCCHHHHHHHHHhhc
Q 001302 455 STRHRVLLTGTPLQNNLDELFMLMHFLD 482 (1104)
Q Consensus 455 ~~~~rllLTgTPlqN~~~EL~~ll~fL~ 482 (1104)
...--|.|||--.+..+.|+..++.-+.
T Consensus 146 p~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 146 PGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred CCCCEEEEECCCCCHHHHHhCchheecc
Confidence 4556799999855544555444444333
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.49 E-value=32 Score=42.77 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.|+.-+-|+|||..+..++..+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4789999999999999999888643
No 365
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=2 Score=48.72 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=36.2
Q ss_pred cccccccC---CCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 52 ~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
+.|.+|-+ .|+.++-=-|...||-.|.+|-|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 68999986 47777778899999999999998764 3379999973
No 366
>PRK10865 protein disaggregation chaperone; Provisional
Probab=74.30 E-value=14 Score=48.29 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHhh--cCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 294 v~wl~~~~--~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555422 34668999999999999999888887754
No 367
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=74.11 E-value=0.57 Score=59.06 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=41.3
Q ss_pred cccccccccCCCCeeecCC-CCCcccc-CcCCCC--CCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~-C~~~~H~-~Cl~p~--l~~~p~~~W~C~~C~~~~ 99 (1104)
...-|.+|+..+.++||++ |+.+||+ .||+-. -...+.+-|+|++|.-..
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 4466999999999999987 9999999 999732 356788999999998544
No 368
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=73.65 E-value=26 Score=40.96 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=40.7
Q ss_pred cHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhc-----ccccEEEEecCCCCCCHHHHHHHHHhhcCCC
Q 001302 413 SYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1104)
Q Consensus 413 sye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l-----~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~ 485 (1104)
+..-+......+.. .++|.||=+-|---...+ ...|..+ ....-|.||+|-=.+.+.+++..+..+...-
T Consensus 268 ~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~-i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 268 SPKELAEAIEALRD--CDVILVDTAGRSQYDKEK-IEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHH-HHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 33333333333433 378999976543222212 2222222 2346689999998888899888888776653
No 369
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.24 E-value=1 Score=48.29 Aligned_cols=46 Identities=15% Similarity=0.420 Sum_probs=33.5
Q ss_pred ccccccccCC---------CCeeecCCCCCccccCcCCCCCCC---CCCCCCccCcCC
Q 001302 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECV 96 (1104)
Q Consensus 51 ~~~C~~C~~~---------~~l~~C~~C~~~~H~~Cl~p~l~~---~p~~~W~C~~C~ 96 (1104)
...|.+|-++ ..+++|..|.-++|++|+.-+..- +-.-.|.|..|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 3458888653 239999999999999999544321 224579999987
No 370
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=73.20 E-value=21 Score=35.45 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
.+|.-+.|+|||..+..++..+... .++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCc
Confidence 4677789999999998888877553 34666665543
No 371
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.11 E-value=22 Score=45.57 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=30.9
Q ss_pred CcHHHHHHHHH-HHHhhcC-C-CcE-EEEcCCCchHHHHHHHHHHHHhc
Q 001302 286 LHPYQLEGLNF-LRFSWSK-Q-THV-ILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 286 L~~yQ~~gv~w-l~~~~~~-~-~~~-ILademGlGKTiqai~~l~~l~~ 330 (1104)
=|+-|++.|.. |...... + .++ +|.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788887744 3333332 2 234 48999999999999888877643
No 372
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=72.52 E-value=7.8 Score=39.99 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=36.2
Q ss_pred cccccCCcceEEEEcCcccccCcc----cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHH
Q 001302 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1104)
Q Consensus 421 ~~~l~~~~w~~vIvDEaHrlkn~~----s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~ 479 (1104)
...+..-.|++||+||.-..-+.. ..+...|..-....-+.|||.-.+..+.|+..++.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 445556789999999986543322 24445555545556799999855444444444333
No 373
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=72.46 E-value=7 Score=47.18 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-----CCceEEEeCcccHHHHHHH
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-----~~p~LIV~P~s~l~qW~~E 351 (1104)
+.+-|-+.+. ...++-.|+.-..|+|||..|+-=+++|+... .+|+||+.|+.++..+...
T Consensus 213 IQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 213 IQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred hhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 4445555543 24566677888999999999988777776542 2489999999988765443
No 374
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.21 E-value=20 Score=42.41 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 001302 307 VILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l 328 (1104)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999998888755
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=71.91 E-value=11 Score=45.25 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=37.8
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHH
Confidence 455567899999999999999988877533 2478888876666665544444
No 376
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=71.48 E-value=20 Score=45.68 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHH----HHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ld----iL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.|||-.+..-.+-.....|.+++|.+.....+. .+..++...|+++..++|+++..+|...+.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578876544433334457889999998766544 55556666789999999999999999999988765444 56
Q ss_pred eecCc-ccccccccCCCEEEEECCC
Q 001302 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1104)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~~ 705 (1104)
+.|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 67765 4556778888888876654
No 377
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=71.14 E-value=6.8 Score=47.86 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~ 329 (1104)
.++++.|++-++-|......|+-||+-.+||+|||+..|......+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 6789999999998999999999999999999999999766554443
No 378
>PRK07952 DNA replication protein DnaC; Validated
Probab=70.99 E-value=14 Score=40.62 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh---hcC-CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~---~~~-~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465565554322 222 24678999999999999999999987654 255555 35566666543
No 379
>PRK06835 DNA replication protein DnaC; Validated
Probab=70.99 E-value=9.7 Score=43.73 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHH----HhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 284 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~----~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
+..+.++..++..+. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 456667666665432 2222457888999999999999999999887664
No 380
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=70.63 E-value=25 Score=45.15 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
...|.||.-+.|.|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46689999999999999988888877554
No 381
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=70.55 E-value=1.4 Score=47.10 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=34.8
Q ss_pred cccccccccCC----------CCeeecCCCCCccccCcCCCCC---CCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~----------~~l~~C~~C~~~~H~~Cl~p~l---~~~p~~~W~C~~C~~ 97 (1104)
...+|--|-.+ .+|+.|..|+|+=|++||.-.. ..+-.-.|.|-+|..
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 45678878543 3499999999999999994221 123356899999984
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.50 E-value=29 Score=35.41 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=35.3
Q ss_pred cccccCCcceEEEEcCcccccCc----ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHH
Q 001302 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFML 477 (1104)
Q Consensus 421 ~~~l~~~~w~~vIvDEaHrlkn~----~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~l 477 (1104)
...+..-.+++||+||.=..-+. ...+...+..-....-++|||--.+..+.|+..+
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 34455668999999998665332 2345555555455567999997554444444433
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=70.30 E-value=25 Score=35.95 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.++.-..|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999999888877664333344444
No 384
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=69.81 E-value=1.5 Score=56.30 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=22.9
Q ss_pred hhhhhhhcCcccccccccchHhHHH
Q 001302 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~~l~~ 155 (1104)
.+|||||+|.+|-.|||+.++.+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 6999999999999999999988754
No 385
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.78 E-value=9.1 Score=43.85 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhcccc
Q 001302 314 GLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKS 393 (1104)
Q Consensus 314 GlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~ 393 (1104)
|.|||.++.-++.++.+.+.++.||.+..---... +.++.|+....+-+|....+..
T Consensus 111 G~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf-DQLkqnA~k~~iP~ygsyte~d---------------------- 167 (483)
T KOG0780|consen 111 GSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF-DQLKQNATKARVPFYGSYTEAD---------------------- 167 (483)
T ss_pred CCCcceeHHHHHHHHHhcCCceeEEeecccccchH-HHHHHHhHhhCCeeEecccccc----------------------
Q ss_pred CccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHH
Q 001302 394 GQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDE 473 (1104)
Q Consensus 394 ~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~E 473 (1104)
.-..+..-...+++-+|++||+|=+-|.+-..+. ++|
T Consensus 168 -------------------pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL------------------------feE 204 (483)
T KOG0780|consen 168 -------------------PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASL------------------------FEE 204 (483)
T ss_pred -------------------hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH------------------------HHH
Q ss_pred HHHHHHhhcCC
Q 001302 474 LFMLMHFLDAG 484 (1104)
Q Consensus 474 L~~ll~fL~p~ 484 (1104)
+...-+++.|+
T Consensus 205 M~~v~~ai~Pd 215 (483)
T KOG0780|consen 205 MKQVSKAIKPD 215 (483)
T ss_pred HHHHHhhcCCC
No 386
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=69.78 E-value=9.2 Score=38.73 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHH
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L 644 (1104)
..++++.++.+|+.+...+|.||+|.+....++..|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 387
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=69.43 E-value=25 Score=37.90 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=25.1
Q ss_pred cceEEEEcCcccccCccc---HHHHHHHhcc-cccEEEEec
Q 001302 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG 464 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s---~~~~~l~~l~-~~~rllLTg 464 (1104)
..++||||..|.+.+... .++..+..+. ...++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 357899999999987642 3444444443 456788877
No 388
>PTZ00293 thymidine kinase; Provisional
Probab=69.15 E-value=27 Score=37.27 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
-++.-.||+|||..-|-.+..... ...+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 456889999999776665554432 234888888843
No 389
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=69.14 E-value=22 Score=40.55 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
|-+++..|......+ ..-++.-+.|.||+..|.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 555666666665555 3467899999999999999999987653
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=69.11 E-value=25 Score=42.38 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCC---CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~---~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
|-..+.+|......+ ...|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 445555665555443 335789999999999999999988654
No 391
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=68.57 E-value=4.1 Score=48.07 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.9
Q ss_pred ccccccccccCCCCeeecCCCCCccccCcCCCCCCCC-CCCCCccCcCCCC
Q 001302 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSP 98 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~ 98 (1104)
..+.+|..|.-.|..+.|+.|.|+||..|+.|--... .+.-|.||.|...
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4567899999999999999999999999997764332 2456999999863
No 392
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=68.53 E-value=0.51 Score=40.93 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=18.3
Q ss_pred cccccccCC----CC--eeecC--CCCCccccCcCCCCCCCCC-------CCCCccCcCCC
Q 001302 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVS 97 (1104)
Q Consensus 52 ~~C~~C~~~----~~--l~~C~--~C~~~~H~~Cl~p~l~~~p-------~~~W~C~~C~~ 97 (1104)
..|.+|... +. .+.|+ .|...||..||---+...+ .-.+.||.|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 458888753 22 68897 8999999999953332111 12356999975
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=68.35 E-value=12 Score=38.70 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=37.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
.+++-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 57889999999999999988876443 4889998877777776666554
No 394
>CHL00095 clpC Clp protease ATP binding subunit
Probab=68.27 E-value=2.1e+02 Score=37.50 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.+++-++|.|||..|-++...++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5799999999999999888887644
No 395
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=67.79 E-value=19 Score=35.72 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh----hCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 610 LQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 610 l~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
..++.+|+.+...+|+||+|+|+....+..|.+.|= ..-++..+.+..... ... ++|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~-------------~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPAA-------------RQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SSTT---------------S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCCC-------------CCe---EEEecC
Confidence 588999999999999999999999999999999992 223444442222110 112 466554
Q ss_pred cccccccccCCCEEEEECCCC
Q 001302 686 AGGLGINLATADTVIIYDSDW 706 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~w 706 (1104)
... -....++++|++++.+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 422 2334489999998876
No 396
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=67.48 E-value=42 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhhcCCCc-EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~-~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
++|+|...-.-+......-.+ .++.-+.|+|||..|..++..+.-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467777776555544444333 5689999999999999999988753
No 397
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=67.07 E-value=20 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l 328 (1104)
..+.||.-+.|+|||..|-++...+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999998887766543
No 398
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=66.85 E-value=41 Score=44.65 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=41.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
..|.+-|.+++..+. ..++-++|.-.-|+|||.+.-++...+... ...++.++|..--
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHHH
Confidence 579999999998652 345557889999999998766655444333 2477888886544
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=66.67 E-value=30 Score=41.29 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1104)
.++.-..|.|||.++.-++.++... +..+.||-+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5678899999999999998888766 4334444444
No 400
>PRK14873 primosome assembly protein PriA; Provisional
Probab=66.46 E-value=25 Score=44.42 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC-C-CcEEEEecCCChHHHHHHHHHHccCCCCceEEEee
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g-~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Lls 683 (1104)
.|||-.....++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.........+.. .++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~---~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA---RVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC---cEEEE
Confidence 689999999999999999999999999988888887777654 3 679999999999999988877765443 37888
Q ss_pred cCcccccccccCCCEEEEEC
Q 001302 684 TRAGGLGINLATADTVIIYD 703 (1104)
Q Consensus 684 tragg~GINL~~ad~VIi~D 703 (1104)
||++- =.=+..-..||+-|
T Consensus 247 tRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred cceeE-EeccCCCCEEEEEc
Confidence 88742 12222334455543
No 401
>CHL00095 clpC Clp protease ATP binding subunit
Probab=66.36 E-value=23 Score=46.13 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
...+.||.-+.|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568899999999999999888777654
No 402
>PRK05973 replicative DNA helicase; Provisional
Probab=66.21 E-value=16 Score=39.93 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 297 l~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
+.-.+..|.-.+|+-.+|+|||+.++.|+...... ..+++++.-...-.+-.+.+..
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHH
Confidence 33345677778999999999999999998877654 2478888765554444444443
No 403
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.01 E-value=65 Score=40.39 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~ 330 (1104)
.|+.-+.|.|||..|..++..+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999988888887753
No 404
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=65.63 E-value=2.4e+02 Score=32.93 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=77.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH---HHHHHHHHHHcCC
Q 001302 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL---RNWEREFATWAPQ 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~--~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l---~qW~~E~~~~~p~ 358 (1104)
.-.|.+|+.-+.-|...-.. ....+|.-..|+|||..+-.++..+ .-|+..+++.... .-|..-+.+-.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~-- 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ-- 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc--
Confidence 34788999988666433222 1224889999999999988777765 2366777764322 33444443321
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
..-+.|....-. . + ....|.-.+..|+...+. -.--++|+|-|.
T Consensus 82 --~~d~dg~~~~~~--~--e------------------------n~~d~i~~l~q~~~~t~~------d~~~~liLDnad 125 (438)
T KOG2543|consen 82 --LADKDGDKVEGD--A--E------------------------NFSDFIYLLVQWPAATNR------DQKVFLILDNAD 125 (438)
T ss_pred --cCCCchhhhhhH--H--H------------------------HHHHHHHHHHhhHHhhcc------CceEEEEEcCHH
Confidence 001111110000 0 0 001111112222222211 112379999999
Q ss_pred cccCcccHHHHHHHhcc-----cccEEEEecCCCC
Q 001302 439 RLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQ 468 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~-----~~~rllLTgTPlq 468 (1104)
.+....+.+.+.+..+. ..-++.+++++..
T Consensus 126 ~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 126 ALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred hhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 99988888887777653 3456888888743
No 405
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=65.45 E-value=4.6 Score=31.32 Aligned_cols=19 Identities=47% Similarity=0.716 Sum_probs=18.1
Q ss_pred cccChhhhHHHHHHhhhcc
Q 001302 1082 KFWKEEHDSLLLRAVLKYV 1100 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~G 1100 (1104)
..|+++||..|+.++.+||
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g 20 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG 20 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999
No 406
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=65.13 E-value=11 Score=43.00 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 281 ~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+..+.+.+.|.+.+ ......+.+.|++-.||+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 33456777776554 444567788999999999999988777776643
No 407
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=65.13 E-value=48 Score=38.26 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
..+|.-+.|+|||..+..++..+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35789999999999999988887643
No 408
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=64.85 E-value=25 Score=45.97 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHhh--cCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 293 GLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 293 gv~wl~~~~--~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
-+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 355565533 34567899999999999999888777654
No 409
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=64.17 E-value=7 Score=46.90 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=39.3
Q ss_pred cccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
+.+.|.+|.++|+++.|+.|..++|-.|. ....|.+.|.|..|....
T Consensus 88 ~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~~ 134 (463)
T KOG1081|consen 88 EPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAFK 134 (463)
T ss_pred CcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeeec
Confidence 45789999999999999999999999995 345678889988887543
No 410
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=64.06 E-value=17 Score=40.39 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
|+...-+..+......+...+|..+.|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 34445555555566788899999999999999998877643 23776664
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=64.05 E-value=30 Score=41.23 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc-CCCCceEEEeC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~-~~~~p~LIV~P 341 (1104)
-.+++-..|.|||.++.-++.++.. .+....||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3678999999999999999888763 43334444444
No 412
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=63.95 E-value=41 Score=40.73 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCc------EEEEcCCCchHHHHHHHHHHHH--hcCCC-CceEEEeCc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPL 342 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~------~ILademGlGKTiqai~~l~~l--~~~~~-~p~LIV~P~ 342 (1104)
..|.|||...+.-|.=.+.++.+ +++...=|=|||..+.+++.+. ..... ..++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766323333333 4788899999998776555543 33333 388999885
No 413
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=63.73 E-value=12 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CC--CceEEEeCcc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS 343 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s 343 (1104)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~ 57 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTN 57 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechH
Confidence 478899999863 35667777789999999999999999864 43 3688888843
No 414
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=63.30 E-value=32 Score=37.91 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.1
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~ 327 (1104)
..|..+++.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57788888889999999654443333
No 415
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=62.88 E-value=11 Score=44.08 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=22.7
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.-.|++++|..+.|.|||..+-.+...+...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 3567778888899999998776666655444
No 416
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.76 E-value=5.7 Score=42.23 Aligned_cols=39 Identities=26% Similarity=0.842 Sum_probs=30.2
Q ss_pred cccccccccCCC--------CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~~--------~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...+|.+|+.++ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 456788888653 3789999999999999842 1 2999974
No 417
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=62.61 E-value=80 Score=36.12 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
-..|.-..|.|||.++..++..+...+ +.++++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 345667999999999888888776543 3555554
No 418
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=62.49 E-value=60 Score=38.62 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
..++--.|.|||.++.-++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457889999999999888887765544 4444443
No 419
>PRK10865 protein disaggregation chaperone; Provisional
Probab=62.36 E-value=4.8e+02 Score=34.30 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..++.-++|+|||..|-++...+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4678999999999999888877754
No 420
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=61.85 E-value=2.4 Score=35.30 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.4
Q ss_pred cchhhhhhhccCCccceeeeeeeeec
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~ 217 (1104)
+.+|+||+.-...|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 45788888877778999999999976
No 421
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=61.56 E-value=5.3 Score=31.64 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=17.7
Q ss_pred cccChhhhHHHHHHhhhcccc
Q 001302 1082 KFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
..||+|||..|+.+|-+||-.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~ 22 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD 22 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCc
Confidence 469999999999999999964
No 422
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=61.04 E-value=34 Score=40.20 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=23.5
Q ss_pred hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 300 ~~~~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
....|..+.|..+.|.|||..+-.+...+...
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 34677888899999999998766655555443
No 423
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=60.20 E-value=21 Score=44.23 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-----CCceEEEeC-cccHHHHHHHHHHHcCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-----~~p~LIV~P-~s~l~qW~~E~~~~~p~ 358 (1104)
.|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|..--+-.+ +
T Consensus 378 ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 4677898887655 3445578899999999999999999887653 239999998 57777765555432 4
Q ss_pred CeEEEEecChhHHHHHHHhhhc
Q 001302 359 MNVVMYVGTSQARNIIREYEFY 380 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~ 380 (1104)
-..++..|+......++.+.++
T Consensus 452 rpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CceEEEeccccCCHHHHHHHHH
Confidence 5567777777665555555443
No 424
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=59.80 E-value=70 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
.++.-..|.|||.++..++..+...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45668999999999988888776554 3555554
No 425
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=59.78 E-value=16 Score=38.22 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=23.7
Q ss_pred ceEEEEcCcccccCcccHHHHHHHhccc--ccEEEEecC
Q 001302 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~~~l~~l~~--~~rllLTgT 465 (1104)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998754 45555666654 456777664
No 426
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=59.77 E-value=54 Score=37.61 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHHHhcCC---------CC-----ceEEEeCcccHHHHHHH---HHHHcCCCeEEEEecChhHHHHHHH
Q 001302 314 GLGKTIQSIAFLASLFGER---------IS-----PHLVVAPLSTLRNWERE---FATWAPQMNVVMYVGTSQARNIIRE 376 (1104)
Q Consensus 314 GlGKTiqai~~l~~l~~~~---------~~-----p~LIV~P~s~l~qW~~E---~~~~~p~~~vv~~~g~~~~r~~i~~ 376 (1104)
|+|||=.++.++..|...+ .+ ..++|.|.+.-..--+| +.+.+| +.++.|..-.+....-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHHHH
Confidence 8999999999999987642 11 27888888866555555 455565 3344444322221110
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccC----cccHHHHHHH
Q 001302 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLK 452 (1104)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn----~~s~~~~~l~ 452 (1104)
. .....+|+|.-= -+.. . .| .-..++|++|-.+-+.| +...+..-+.
T Consensus 124 ~-------------------------~~~~~dviilDD-GfQh-~-~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~ 174 (326)
T PF02606_consen 124 L-------------------------KEFPADVIILDD-GFQH-R-RL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLS 174 (326)
T ss_pred H-------------------------HHCCCCEEEEcC-Cccc-c-cc-cCCcEEEEEeCCCCCcCCccCCCCcccCChh
Confidence 0 011256665420 0000 0 01 12467888997666665 2334444455
Q ss_pred hcccccEEEEecCCC
Q 001302 453 QYSTRHRVLLTGTPL 467 (1104)
Q Consensus 453 ~l~~~~rllLTgTPl 467 (1104)
.+.....+++|+.+.
T Consensus 175 ~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 175 ALKRADAVIVTGCDA 189 (326)
T ss_pred HhCcccEEEEcCCCc
Confidence 566566677787764
No 427
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=59.66 E-value=4.4 Score=36.81 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=26.4
Q ss_pred ccccccccccCC-CCeeecC--CCCCccccCcCC
Q 001302 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLV 79 (1104)
Q Consensus 49 ~~~~~C~~C~~~-~~l~~C~--~C~~~~H~~Cl~ 79 (1104)
.....|..|+.. |-.+.|. +|.+.||+.|..
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 345689999998 9999996 599999999974
No 428
>smart00300 ChSh Chromo Shadow Domain.
Probab=59.41 E-value=6.4 Score=33.13 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.2
Q ss_pred cchhhhhhhccCCccceeeeeeee
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKE 215 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkg 215 (1104)
..+|+|+.....++...||+||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 467899988888899999999999
No 429
>CHL00176 ftsH cell division protein; Validated
Probab=59.18 E-value=46 Score=41.85 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l 328 (1104)
..+.+|.-+.|+|||..|=+++..+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987776543
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=59.16 E-value=24 Score=45.42 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
...+.+|.-+.|+|||..|-+++..+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 45678899999999999887776643 2377777766555544
No 431
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=58.94 E-value=23 Score=42.61 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.9
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4556678999999999999999888776543 478888887666665544443
No 432
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=58.73 E-value=93 Score=37.78 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhcCCC------cEEEEcCCCchHHHHHHHHHHHHh-cCC-CC-ceEEEeCc
Q 001302 288 PYQLEGLNFLRFSWSKQT------HVILADEMGLGKTIQSIAFLASLF-GER-IS-PHLVVAPL 342 (1104)
Q Consensus 288 ~yQ~~gv~wl~~~~~~~~------~~ILademGlGKTiqai~~l~~l~-~~~-~~-p~LIV~P~ 342 (1104)
|+|...+..+ +.|.... .++|.-.=|-|||..+.++..+.+ -.+ .+ -++++++.
T Consensus 1 PwQ~fi~~~i-~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSI-FGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHH-hceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 6788766544 3343222 267788899999988777655543 232 23 45666663
No 433
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=58.46 E-value=1.1 Score=34.85 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=26.6
Q ss_pred ccccccCC---CC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCC
Q 001302 53 SCQACGES---EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1104)
Q Consensus 53 ~C~~C~~~---~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1104)
.|.+|... ++ ++... |+..||..|+..-+... -.||.|.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 58888753 33 44444 99999999997666542 2788883
No 434
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=57.99 E-value=38 Score=43.04 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCC--ceEEEeC-cccHHHHHHHHHHHc
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAP-LSTLRNWEREFATWA 356 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~~--p~LIV~P-~s~l~qW~~E~~~~~ 356 (1104)
|.|-|.++|+ ...+.+++....|+|||.+.+.-+.++... +.. .+|+|+. .....+-++.+.+..
T Consensus 2 Ln~~Q~~av~------~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVE------YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 7789999886 345677778899999999999999998864 333 5777766 455555666665544
No 435
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=57.88 E-value=16 Score=39.39 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.2
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHc
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
-.|.-.+|+-+.|+|||+.++.|+..-......+++.|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 4566678999999999999999887665541238888888777777888877654
No 436
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=57.47 E-value=16 Score=46.82 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CC--CceEEEeCcc-cHHHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS-TLRNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s-~l~qW~~E~~~~~ 356 (1104)
.|.|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+. ....-+.-+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999986 345677888899999999999999999864 33 3688888743 3333333344433
No 437
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=57.23 E-value=19 Score=46.05 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999987777665443
No 438
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=57.23 E-value=9.5 Score=39.54 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=19.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 308 ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
||..+=|-|||...-.+++.+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 35557899999765555555555555689999994
No 439
>PRK08939 primosomal protein DnaI; Reviewed
Probab=57.19 E-value=17 Score=41.37 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHhhc--CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 293 gv~wl~~~~~--~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
+..|+...-. .+.|.+|.-.+|+|||..+.|++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4556532211 3567889999999999999999999886543 44444
No 440
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.06 E-value=39 Score=37.91 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P 341 (1104)
.+...+|.-.+|.|||.++..++.++... +..++.+|.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34456688899999999998888887654 3335555543
No 441
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=35 Score=39.45 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=33.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
+++++.-+.|+|||+.|=|++... ...|.=|.-..+...|+-|=++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 678899999999999887665532 12455555566668898876653
No 442
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=56.77 E-value=5.3 Score=37.88 Aligned_cols=29 Identities=31% Similarity=0.850 Sum_probs=25.0
Q ss_pred ccccccccCC-CCeeecCC--CCCccccCcCC
Q 001302 51 DDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1104)
Q Consensus 51 ~~~C~~C~~~-~~l~~C~~--C~~~~H~~Cl~ 79 (1104)
...|.+|+.. |-.+.|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 5679999984 77999987 99999999963
No 443
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.52 E-value=16 Score=42.07 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-..+.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEiy 89 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEIY 89 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG-
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEcccceee
Confidence 46678899999999999999998877322 388888775444
No 444
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=56.42 E-value=7.7 Score=29.44 Aligned_cols=19 Identities=58% Similarity=0.823 Sum_probs=17.6
Q ss_pred ccChhhhHHHHHHhhhccc
Q 001302 1083 FWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1083 ~~~~eeD~~LL~~i~~~G~ 1101 (1104)
.|+.+||..|+.++.+||.
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~ 19 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK 19 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 4999999999999999994
No 445
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=56.20 E-value=73 Score=36.25 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
-++..+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999888654
No 446
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=55.73 E-value=20 Score=46.06 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CC--CceEEEeCc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL 342 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~ 342 (1104)
.|.|-|.++|. ...+..++....|+|||.+.+.-+++|... +. ..+|+|+-+
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 48899999986 334667777789999999999999999863 43 358888874
No 447
>PRK06921 hypothetical protein; Provisional
Probab=55.69 E-value=36 Score=37.86 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.+.+.+|.-++|+|||..+.+++..+.......++.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 466789999999999999999998887652234454443
No 448
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.28 E-value=68 Score=38.83 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhc-CCCCceEEE
Q 001302 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVV 339 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~-~~~~p~LIV 339 (1104)
..|.-..|.|||.++.-++..+.. .+...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457889999999998777776643 333344433
No 449
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.21 E-value=19 Score=41.21 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=33.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
....|.+|..+.|+|||..|-++.... ..+|+=|-=.++...|--|-++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 477889999999999999887766532 22444444455556776665443
No 450
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=55.10 E-value=18 Score=40.15 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 295 ~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
.+|......+++.+++-++|+|||.+.-+++..+-.. ...+++|
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~i 161 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTI 161 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEe
Confidence 4555555678899999999999999988877765444 2344444
No 451
>PRK10689 transcription-repair coupling factor; Provisional
Probab=54.89 E-value=1e+02 Score=41.64 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh----hCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.+||-.+....+-.....|.+|+|.+..+..+.-+.+.+. ..++++..+.|..+..++.+++.....+..+ ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 4667654433333334568899999998877665555443 3356778899999999999998888654433 56
Q ss_pred eecCc-ccccccccCCCEEEEECC
Q 001302 682 LSTRA-GGLGINLATADTVIIYDS 704 (1104)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~ 704 (1104)
++|.. ....+++.....+|+=+-
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEech
Confidence 66653 444567777888887554
No 452
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=54.73 E-value=4.9 Score=32.93 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.6
Q ss_pred hhhhhhhccCC-ccceeeeeeee
Q 001302 194 VDRILACRGED-DEKEYLVKYKE 215 (1104)
Q Consensus 194 verIi~~r~~~-~~~~yLVKWkg 215 (1104)
+++|+.....+ |...||+||++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~ 24 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD 24 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC
Confidence 56777766555 88999999999
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.65 E-value=64 Score=41.20 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=23.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHh-cCCCCceEEEe
Q 001302 305 THVILADEMGLGKTIQSIAFLASLF-GERISPHLVVA 340 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~-~~~~~p~LIV~ 340 (1104)
.-..|.-..|.|||.++.-++..+. ..+...+.+|.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 3356889999999988776666553 33333444443
No 454
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.28 E-value=73 Score=37.12 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
...++.-+.|+|||..+-+++..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35779999999999988888776654
No 455
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=54.22 E-value=46 Score=34.57 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=23.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 308 ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
++.-.|++|||...|..+..+...+ .+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 4567999999998877776654432 367777773
No 456
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.20 E-value=16 Score=43.03 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
-++.+|+-+.|.|||..+.+++... ...|-=|.|.++...|.-|-++
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHH
Confidence 3466899999999999888877643 3367778899999988777654
No 457
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=53.80 E-value=28 Score=39.42 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+.+-+-|.+ +|......+.+.+++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 334444443 44555567889999999999999988777776654
No 458
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=53.76 E-value=5.3 Score=41.59 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=33.0
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCC------------CCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA------------PPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~------------~p~~~W~C~~C~~~~ 99 (1104)
+..|.+|.+.-..-....|+..|++.|+..-+.. .......||.|....
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 4669999876443333679999999999643321 012456899999765
No 459
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=53.61 E-value=85 Score=36.68 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHHH-Hhhc--CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 285 SLHPYQLEGLNFLR-FSWS--KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~-~~~~--~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.-|+-|++.+.... .... ...+.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 46788888774432 2222 23458999999999999988888777655
No 460
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=53.59 E-value=37 Score=36.96 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=38.0
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..+...+++-+.|+|||+.++-|+...... ..+.|+|+-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 456667889999999999999988876533 2488888866666555555544
No 461
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=53.54 E-value=7.6 Score=31.29 Aligned_cols=34 Identities=29% Similarity=0.763 Sum_probs=20.9
Q ss_pred ecCCCCCccccCcCCC-----C---CCCCCCCCCccCcCCCCC
Q 001302 65 SCDTCTYAYHAKCLVP-----P---LKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 65 ~C~~C~~~~H~~Cl~p-----~---l~~~p~~~W~C~~C~~~~ 99 (1104)
.|..|...|+..==+| | ..+. ..+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~L-p~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDL-PDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHC-CCCCCCCCCCCcH
Confidence 5778888887542222 1 1223 3589999998654
No 462
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=53.47 E-value=3.7 Score=31.21 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=29.6
Q ss_pred cccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 54 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 54 C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
|.+|...- +.+....|+..||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77887654 45555669999999999655443 4567999975
No 463
>PHA00012 I assembly protein
Probab=53.03 E-value=34 Score=38.88 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 308 ILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 308 ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
++.--.|.|||+.|++-+...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4566789999999998776666665
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=52.72 E-value=19 Score=39.08 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=34.5
Q ss_pred HhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 299 ~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
..+..|.-.+|+-..|.|||..++.++.........++|++....
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 345667778999999999999999988877665344888887543
No 465
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=52.60 E-value=86 Score=43.42 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh---cCCCCceEEEeCcccH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~---~~~~~p~LIV~P~s~l 345 (1104)
.|.+-|.+++..+.. ...+-++|.--.|+|||.+.-+++..+. ......++.++|.+--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999875532 2345688999999999988655544432 2222357778996544
No 466
>PRK12377 putative replication protein; Provisional
Probab=52.36 E-value=42 Score=36.95 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
..+.+|.-+.|+|||..+.+++..+...+. +++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHHH
Confidence 356789999999999999999999876542 44444334444433
No 467
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=52.25 E-value=40 Score=36.62 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=37.1
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..+.-.+|.-+.|+|||..++.++..+...+ .+++.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566788999999999999998888876543 467777765555444444433
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=54 Score=38.32 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
|.-.++.-+.|.||+..-+-++..+.... ++|.|+=..-+.||+--..+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 34467899999999987777777776555 9999999999999988877764
No 469
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=52.04 E-value=6.1 Score=31.19 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.5
Q ss_pred hhhhhc-cCCccceeeeeeeeec
Q 001302 196 RILACR-GEDDEKEYLVKYKELS 217 (1104)
Q Consensus 196 rIi~~r-~~~~~~~yLVKWkgL~ 217 (1104)
+|++.| ..++..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 677777 4678899999999864
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=51.74 E-value=28 Score=38.63 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+.+.|.+.+.++.. ..++..+++-++|+|||.+.-+++..+..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 66788887765532 33455789999999999998888877643
No 471
>PHA02929 N1R/p28-like protein; Provisional
Probab=51.67 E-value=5.4 Score=43.22 Aligned_cols=48 Identities=25% Similarity=0.532 Sum_probs=33.3
Q ss_pred cccccccccCCCC--------eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCc
Q 001302 50 KDDSCQACGESEN--------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (1104)
Q Consensus 50 ~~~~C~~C~~~~~--------l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 101 (1104)
.+..|++|...-. ...-..|...||..|+.+-+...+ .||.|..+...
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEeeE
Confidence 3567999986411 122357999999999977665433 69999976543
No 472
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=51.46 E-value=40 Score=36.17 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
.+.-.+++.+.|+|||..++.++...... ..+++++.......+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 45556889999999999999988776554 35888998877776666666554
No 473
>PRK08760 replicative DNA helicase; Provisional
Probab=51.33 E-value=41 Score=40.78 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHH
Q 001302 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1104)
Q Consensus 293 gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~ 355 (1104)
.++-+...+..|.=.|||..+|.|||.-++.++.........|++++..--...++..-+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 334444556677778999999999999999998876543334889998877777877665443
No 474
>PRK09087 hypothetical protein; Validated
Probab=50.95 E-value=74 Score=34.45 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=26.0
Q ss_pred eEEEEcCcccccCcccHHHHHHHhccc-ccEEEEecC
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQYST-RHRVLLTGT 465 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l~~-~~rllLTgT 465 (1104)
++|+||+.|.+......++..+..+.. ...+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 379999999886555566666665543 567888887
No 475
>PRK10263 DNA translocase FtsK; Provisional
Probab=50.47 E-value=52 Score=43.98 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=29.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCC--ceEEEeCcc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~-~~~--p~LIV~P~s 343 (1104)
+..+.+++-.+|+|||...-++|..+... ... .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 34678999999999999988888776543 222 566666664
No 476
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=49.89 E-value=88 Score=43.82 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc--C-CCCceEEEeCcccHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG--E-RISPHLVVAPLSTLR 346 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~--~-~~~p~LIV~P~s~l~ 346 (1104)
..|.+-|.+++..+.. ...+-.+|.--.|+|||.+.-+++..+.. . ....++.++|..--.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4689999999987642 23456888999999999886655555432 2 223677789976443
No 477
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=49.78 E-value=29 Score=34.60 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh-h---CCCcEEEEecCCChHHHHHHHHHHccCCCCceEE
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-F---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~-~---~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~ 680 (1104)
..+.++.++.+|+.+...+|+||+|++.....++.|.+.|= . .-++..+..+.. ..... +
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~---------------~~~~P-V 73 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP---------------AAGQP-V 73 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC---------------CCCCC-E
Confidence 35668999999999999999999999999999999999992 2 233443322221 11122 4
Q ss_pred EeecCcccccccccCCCEEEEECCCC
Q 001302 681 LLSTRAGGLGINLATADTVIIYDSDW 706 (1104)
Q Consensus 681 Llstragg~GINL~~ad~VIi~D~~w 706 (1104)
+|+. +..-|...++.+|+++..+
T Consensus 74 ~l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 74 LLTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEEc---CCCCCCCCCcEEEECCCCC
Confidence 4441 1223566778888888764
No 478
>PF12846 AAA_10: AAA-like domain
Probab=49.75 E-value=30 Score=38.63 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWER 350 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~ 350 (1104)
+.++++.-.+|+|||..+..++..+...+ .+++|+=|..-...|.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~~~ 46 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPLAR 46 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHHHH
Confidence 35788889999999998887777776654 36666666644444333
No 479
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.71 E-value=34 Score=40.25 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCch
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~ 386 (1104)
.+++-=-|+|||.++.=++.++.. ....+|+|+--.--+-=...++..+-...|-+|.-....
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~---------------- 165 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK---------------- 165 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC----------------
Q ss_pred hhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc
Q 001302 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl 440 (1104)
..-+++......++.-.+++||||=|-|+
T Consensus 166 -------------------------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 166 -------------------------DPVEIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred -------------------------CHHHHHHHHHHHHHHcCCCEEEEeCCCcc
No 480
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=49.67 E-value=42 Score=37.06 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=39.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..+...++.-++|+|||+-++-|+...... ..|+|.|+-...-..-.+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH
Confidence 567778899999999999999999988777 2488888876555444444443
No 481
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=49.49 E-value=11 Score=31.33 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=16.3
Q ss_pred cChhhhHHHHHHhhhcccc
Q 001302 1084 WKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1084 ~~~eeD~~LL~~i~~~G~~ 1102 (1104)
||.|||..|+.++.+||..
T Consensus 1 WT~eEd~~L~~~~~~~g~~ 19 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND 19 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 8999999999999999974
No 482
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.14 E-value=80 Score=35.99 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCch
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~ 386 (1104)
.++.---|.|||.+..=++.++..++. ++|+.+--.--.-=..+++.|.-.+.+-++.+...+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~---------------- 204 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGA---------------- 204 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCC----------------
Q ss_pred hhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcc--------ccc
Q 001302 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS--------TRH 458 (1104)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~--------~~~ 458 (1104)
-+-..+-.....-..-.+++||+|=|-|+-|....+...-+-.+ ++|
T Consensus 205 -------------------------DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~ 259 (340)
T COG0552 205 -------------------------DPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPH 259 (340)
T ss_pred -------------------------CcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCc
Q ss_pred EEEEe--cCCCCCCHHH
Q 001302 459 RVLLT--GTPLQNNLDE 473 (1104)
Q Consensus 459 rllLT--gTPlqN~~~E 473 (1104)
.++|+ ||-=||.+..
T Consensus 260 e~llvlDAttGqnal~Q 276 (340)
T COG0552 260 EILLVLDATTGQNALSQ 276 (340)
T ss_pred eEEEEEEcccChhHHHH
No 483
>PRK05748 replicative DNA helicase; Provisional
Probab=49.02 E-value=38 Score=40.81 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHH
Q 001302 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 292 ~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~ 352 (1104)
.+++-+...+..|.-.+|+..+|.|||.-++.++.........+++++...-.-.+...-+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 4455554556777778999999999999999998876543334888887766555554443
No 484
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=49.00 E-value=9.1 Score=42.48 Aligned_cols=65 Identities=20% Similarity=0.455 Sum_probs=38.9
Q ss_pred ccccccccccccCCC-----CeeecCCCCCcc--------ccCcCCCCCCCCCC-CCCccCcCCC-----CCCccccccc
Q 001302 47 IDAKDDSCQACGESE-----NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECVS-----PLNDIDKILD 107 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~-----~l~~C~~C~~~~--------H~~Cl~p~l~~~p~-~~W~C~~C~~-----~~~~iekil~ 107 (1104)
++..+..|.+||+.- .|+-|.+|...| |+.|....-..+.. ..=.||.|.= ...+.|.+-+
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCLtvGMklEAVRA 90 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCLTVGMKLEAVRA 90 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHHhhhhhhHHHHHH
Confidence 444567899999742 299999998765 66676444333321 2346888862 2234455545
Q ss_pred cccc
Q 001302 108 CEMR 111 (1104)
Q Consensus 108 wr~~ 111 (1104)
-|||
T Consensus 91 DRMR 94 (475)
T KOG4218|consen 91 DRMR 94 (475)
T ss_pred hhhc
Confidence 4544
No 485
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=48.80 E-value=1.2e+02 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
+|...|-..+..|......++ .++|... |.||+..|..|+..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 355677777777777666654 3555544 6899999999999887643
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=48.60 E-value=37 Score=39.66 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHHHHhh--cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~--~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
+|-+-|..+++.+...+ ..+.+..|.-.-|+|||...=++...+... ..++++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-GKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-cceEEEecchHHH
Confidence 36778999988875554 456677899999999999877777766442 3488999997654
No 487
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.49 E-value=83 Score=36.85 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-c---ccHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWERE 351 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~---s~l~qW~~E 351 (1104)
+...+++-..|.|||.++..++..+...+. ++.+|+- . ..+.||+.-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHHH
Confidence 444567889999999998888877655543 4444433 2 235666543
No 488
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.29 E-value=1.3e+02 Score=35.70 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=31.4
Q ss_pred cceEEEEcCcccccCcccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001302 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s~~~~~l~~l~-----~~~rllLTgTPlqN~~~EL~~ll~fL~p 483 (1104)
..+.++||.+=+..+. ..+...+..+. ....|.|+||--.+.+.++...+..+.+
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 3578899987444332 22333444432 2345789999766666666655554433
No 489
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=48.18 E-value=24 Score=36.75 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC---------CCCceEEEeCcccHHHHHHHHHHHc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~---------~~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
.+.-++++-..|.|||..++.++..+... ...++|+|.......+..+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 56668999999999999999998888752 2348899988777777777776655
No 490
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=48.02 E-value=78 Score=41.67 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHH----hhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L----~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.|||-.+....+-.....|.+++|.+..+..+....+.+ ...++++..++|.++..++.+++..+..+..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 577776544333333456889999999887766555444 44577888999999999999999988764333 56
Q ss_pred eecCc-ccccccccCCCEEEEECC
Q 001302 682 LSTRA-GGLGINLATADTVIIYDS 704 (1104)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~ 704 (1104)
++|.. ....+.+.....||+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 66654 445677778888877554
No 491
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=47.96 E-value=36 Score=38.93 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~ 329 (1104)
+.+.+.|.+.+ ......+.+.+++-.+|+|||...-+++..+.
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 45566666544 44456788999999999999977767766553
No 492
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=47.48 E-value=24 Score=37.89 Aligned_cols=41 Identities=32% Similarity=0.451 Sum_probs=25.9
Q ss_pred cceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 001302 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~ 471 (1104)
..+.+||||++.+-.. .+.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g--~l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YLLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChH--HHHH-HHhhccCcceEEEECchhccC
Confidence 4689999999976431 1222 333344446777899987653
No 493
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=47.13 E-value=76 Score=36.18 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=16.3
Q ss_pred CCchHHHHHHHHHHHHhcC
Q 001302 313 MGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 313 mGlGKTiqai~~l~~l~~~ 331 (1104)
=|+|||=.++.++..+...
T Consensus 39 GGTGKTP~v~~La~~l~~~ 57 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDR 57 (311)
T ss_pred CCcChHHHHHHHHHHHHHC
Confidence 4899999999999988754
No 494
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=46.95 E-value=27 Score=38.12 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=24.8
Q ss_pred EcCCCchHHHHHHHHHHHHhcCCCCceEEE--eCcccH
Q 001302 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (1104)
Q Consensus 310 ademGlGKTiqai~~l~~l~~~~~~p~LIV--~P~s~l 345 (1104)
.--=|.|||..+.++...|...+. ++|+| +|.+.+
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 334489999999998888876553 56555 666655
No 495
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=46.61 E-value=60 Score=34.93 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=36.0
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHH
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
+..+...+|+-+.|+|||..+..++...... ..+.++|.-.....+..+...
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH
Confidence 4566778899999999999999888765543 237777776555544444333
No 496
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=46.59 E-value=62 Score=37.08 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCC
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPl 467 (1104)
.++++||.||+.. ++.-..|-.+...-.+++-||--
T Consensus 224 TilFiDEiHRFNk--sQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 224 TILFIDEIHRFNK--SQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred eEEEeHHhhhhhh--hhhhcccceeccCceEEEecccC
Confidence 3689999999833 23223333344566778888853
No 497
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=46.33 E-value=49 Score=42.60 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=25.7
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
..+.+.+|.-+.|+|||..+-+++..+ ..+++.|-...
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~~~~ 247 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISINGPE 247 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEecHH
Confidence 345778999999999998876665543 22555554433
No 498
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=46.06 E-value=8.6e+02 Score=32.27 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcC---CCeEEEEecChhHHHHHHH
Q 001302 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAP---QMNVVMYVGTSQARNIIRE 376 (1104)
Q Consensus 308 ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p---~~~vv~~~g~~~~r~~i~~ 376 (1104)
+|.-++|.|||--.+--+......+ +|+..|||.+.--+=.++|-.-.+ .+++.+++-..-++.+..+
T Consensus 5 ~lyg~~gtgkT~~l~~e~~~~~~~g-kpviyIvP~q~sFe~E~~~L~~~~~~g~~~i~V~~F~rLa~~i~~e 75 (1108)
T COG3857 5 LLYGRAGTGKTEILTEEIQEELEKG-KPVIYIVPSQMSFEKEKEILERLRQGGSFRIQVTRFKRLAYYILQE 75 (1108)
T ss_pred eehhhccccHHHHHHHHHHHHHHcC-CcEEEEcccchhHHHHHHHHhCcccCCeeeEEEEEHHHHHHHHHHh
Confidence 6788999999965555555555554 799999999988888888765432 3456666655555554443
No 499
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=46.04 E-value=67 Score=37.91 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=24.3
Q ss_pred EEEEcCCCchHHHHHHHHHH-HHhcC-CCCceEEEeCc
Q 001302 307 VILADEMGLGKTIQSIAFLA-SLFGE-RISPHLVVAPL 342 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~-~l~~~-~~~p~LIV~P~ 342 (1104)
.|+.-.-|+|||..++..+. .+... ....+||+-|.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 45667789999988765444 44443 44578888783
No 500
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=45.22 E-value=8.5e+02 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.++.-++|.|||..|-++...++... ..+|...
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~d 631 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGE--QNLITIN 631 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEe
Confidence 58899999999999988888776432 3444443
Done!