Query 001302
Match_columns 1104
No_of_seqs 667 out of 4057
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3E-110 1E-114 1061.1 36.9 704 99-836 37-788 (800)
2 1z3i_X Similar to RAD54-like; 100.0 8.4E-75 2.9E-79 719.0 35.5 476 284-779 54-573 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.5E-68 5.1E-73 647.2 36.2 455 278-777 31-496 (500)
4 3dmq_A RNA polymerase-associat 100.0 2E-48 6.8E-53 501.3 24.7 418 284-752 152-631 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1E-43 3.5E-48 425.6 30.6 421 284-753 8-492 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 1.1E-42 3.7E-47 384.5 20.1 252 516-779 13-269 (271)
7 2fwr_A DNA repair protein RAD2 100.0 1.8E-40 6E-45 398.4 17.7 371 283-752 91-470 (472)
8 3hgt_A HDA1 complex subunit 3; 100.0 3E-38 1E-42 347.9 19.8 212 528-747 20-248 (328)
9 4a2p_A RIG-I, retinoic acid in 100.0 7.1E-35 2.4E-39 356.5 39.2 430 284-773 6-542 (556)
10 4a2w_A RIG-I, retinoic acid in 100.0 4E-36 1.4E-40 386.6 27.3 418 283-772 246-782 (936)
11 4a2q_A RIG-I, retinoic acid in 100.0 9.5E-36 3.2E-40 379.0 30.2 418 283-772 246-782 (797)
12 3tbk_A RIG-I helicase domain; 100.0 3.8E-35 1.3E-39 358.5 31.6 442 284-772 3-540 (555)
13 2oca_A DAR protein, ATP-depend 100.0 1.1E-32 3.7E-37 333.9 28.0 347 284-743 112-465 (510)
14 4gl2_A Interferon-induced heli 100.0 2.5E-32 8.5E-37 343.6 27.5 425 284-757 6-540 (699)
15 2ykg_A Probable ATP-dependent 100.0 3.2E-32 1.1E-36 342.4 28.3 392 284-741 12-521 (696)
16 3h1t_A Type I site-specific re 100.0 1.2E-31 4.1E-36 330.6 20.9 351 283-733 176-558 (590)
17 1xti_A Probable ATP-dependent 100.0 2E-29 7E-34 294.0 29.0 326 285-747 30-367 (391)
18 1hv8_A Putative ATP-dependent 100.0 3.7E-29 1.3E-33 288.7 24.5 309 285-736 28-345 (367)
19 1s2m_A Putative ATP-dependent 100.0 1.8E-28 6E-33 287.2 27.1 313 285-736 43-365 (400)
20 2z0m_A 337AA long hypothetical 100.0 1.9E-28 6.6E-33 279.4 22.8 313 284-747 15-335 (337)
21 2j0s_A ATP-dependent RNA helic 100.0 4.6E-28 1.6E-32 284.7 25.7 315 285-736 59-383 (410)
22 3eiq_A Eukaryotic initiation f 100.0 2.7E-28 9.3E-33 286.7 19.3 317 284-736 61-387 (414)
23 1fuu_A Yeast initiation factor 100.0 1.9E-28 6.7E-33 285.8 15.2 315 284-736 42-366 (394)
24 3pey_A ATP-dependent RNA helic 100.0 2.5E-27 8.4E-32 276.3 23.2 310 284-730 26-352 (395)
25 2db3_A ATP-dependent RNA helic 99.9 1.9E-26 6.6E-31 273.2 26.4 311 285-734 78-405 (434)
26 2i4i_A ATP-dependent RNA helic 99.9 1.4E-26 4.7E-31 272.6 24.5 316 284-736 36-383 (417)
27 2y9y_A Imitation switch protei 99.9 3.7E-28 1.3E-32 267.5 7.7 138 952-1101 103-248 (374)
28 3fht_A ATP-dependent RNA helic 99.9 2.1E-25 7.1E-30 261.8 28.2 327 284-749 46-391 (412)
29 3oiy_A Reverse gyrase helicase 99.9 3.6E-25 1.2E-29 260.6 29.5 317 284-751 20-376 (414)
30 1oyw_A RECQ helicase, ATP-depe 99.9 3E-25 1E-29 268.3 26.5 305 284-729 24-338 (523)
31 2v1x_A ATP-dependent DNA helic 99.9 1.7E-24 5.9E-29 264.5 24.6 313 284-730 43-370 (591)
32 1ofc_X ISWI protein; nuclear p 99.9 1.6E-26 5.6E-31 250.3 5.7 137 952-1101 90-232 (304)
33 2eyq_A TRCF, transcription-rep 99.9 2.3E-24 7.8E-29 281.2 24.8 308 284-735 602-921 (1151)
34 3sqw_A ATP-dependent RNA helic 99.9 1.4E-24 5E-29 266.6 21.5 333 285-746 43-406 (579)
35 3i5x_A ATP-dependent RNA helic 99.9 3.9E-24 1.3E-28 262.1 21.7 326 284-736 93-449 (563)
36 3fho_A ATP-dependent RNA helic 99.9 2.8E-25 9.4E-30 268.4 10.5 311 285-730 141-466 (508)
37 2xgj_A ATP-dependent RNA helic 99.9 4.1E-23 1.4E-27 265.6 29.1 346 283-736 84-499 (1010)
38 3fmp_B ATP-dependent RNA helic 99.9 5.2E-24 1.8E-28 255.7 13.5 310 284-729 113-441 (479)
39 1gm5_A RECG; helicase, replica 99.9 9E-24 3.1E-28 263.6 12.3 308 284-729 367-692 (780)
40 3l9o_A ATP-dependent RNA helic 99.9 9.3E-22 3.2E-26 255.1 25.4 348 284-737 183-598 (1108)
41 4a4z_A Antiviral helicase SKI2 99.9 5.6E-21 1.9E-25 245.7 28.8 391 270-744 24-500 (997)
42 2va8_A SSO2462, SKI2-type heli 99.9 1.6E-20 5.4E-25 236.5 28.8 326 285-737 30-409 (715)
43 2p6r_A Afuhel308 helicase; pro 99.9 9.8E-21 3.3E-25 237.7 26.5 321 285-740 25-392 (702)
44 2zj8_A DNA helicase, putative 99.9 2.2E-21 7.5E-26 244.3 19.3 319 285-740 23-391 (720)
45 4ddu_A Reverse gyrase; topoiso 99.8 5.5E-20 1.9E-24 238.5 27.7 275 284-706 77-388 (1104)
46 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2.7E-20 9.3E-25 238.0 23.0 339 285-734 271-707 (1038)
47 2h1e_A Chromo domain protein 1 99.8 1.8E-22 6.1E-27 204.9 -1.1 138 99-241 12-176 (177)
48 2b2y_A CHD-1, chromodomain-hel 99.8 2.9E-22 1E-26 205.1 -0.2 143 97-242 11-185 (187)
49 1gku_B Reverse gyrase, TOP-RG; 99.8 9.7E-19 3.3E-23 227.0 21.0 317 283-752 55-468 (1054)
50 1rif_A DAR protein, DNA helica 99.7 7.2E-18 2.5E-22 187.7 13.7 163 284-483 112-278 (282)
51 2v6i_A RNA helicase; membrane, 99.7 7.8E-18 2.7E-22 198.7 14.2 100 623-730 170-287 (431)
52 1tf5_A Preprotein translocase 99.7 1.6E-16 5.5E-21 194.6 22.6 118 606-728 414-539 (844)
53 1yks_A Genome polyprotein [con 99.7 2.5E-17 8.5E-22 194.8 14.2 94 622-723 175-287 (440)
54 2jlq_A Serine protease subunit 99.7 7.7E-18 2.6E-22 200.0 9.6 95 622-724 186-300 (451)
55 1t5i_A C_terminal domain of A 99.7 8E-17 2.7E-21 165.5 14.5 119 606-729 15-133 (172)
56 2fz4_A DNA repair protein RAD2 99.7 1.1E-16 3.8E-21 173.2 15.7 145 279-471 87-233 (237)
57 2fsf_A Preprotein translocase 99.7 9E-16 3.1E-20 187.4 24.9 120 605-729 422-578 (853)
58 4b4c_A Chromodomain-helicase-D 99.7 1.4E-17 4.9E-22 176.7 7.8 132 965-1102 6-155 (211)
59 2hjv_A ATP-dependent RNA helic 99.7 1.1E-16 3.7E-21 163.0 13.9 134 606-748 19-152 (163)
60 2jgn_A DBX, DDX3, ATP-dependen 99.7 4.8E-17 1.7E-21 169.2 10.9 126 605-736 28-153 (185)
61 1nkt_A Preprotein translocase 99.7 3.4E-15 1.2E-19 182.5 27.5 118 606-728 442-611 (922)
62 2wv9_A Flavivirin protease NS2 99.7 5.5E-17 1.9E-21 200.1 12.1 98 622-727 408-526 (673)
63 2z83_A Helicase/nucleoside tri 99.7 7.1E-17 2.4E-21 192.1 11.0 105 623-736 189-313 (459)
64 2whx_A Serine protease/ntpase/ 99.7 2E-16 7E-21 193.8 14.9 104 622-734 353-476 (618)
65 2p6n_A ATP-dependent RNA helic 99.7 2.3E-16 7.9E-21 164.8 10.8 123 606-736 39-161 (191)
66 1fuk_A Eukaryotic initiation f 99.6 3.4E-16 1.1E-20 159.7 10.5 124 608-738 16-139 (165)
67 4f92_B U5 small nuclear ribonu 99.6 1.3E-14 4.4E-19 194.9 28.7 317 285-736 926-1308(1724)
68 3o8b_A HCV NS3 protease/helica 99.6 4E-16 1.4E-20 189.7 10.8 102 623-739 395-517 (666)
69 4f92_B U5 small nuclear ribonu 99.6 2.2E-14 7.5E-19 192.7 28.4 321 284-737 78-474 (1724)
70 2rb4_A ATP-dependent RNA helic 99.6 2.2E-15 7.4E-20 155.2 13.7 123 608-737 20-148 (175)
71 3rc3_A ATP-dependent RNA helic 99.6 1.5E-15 5E-20 186.9 13.9 108 626-735 322-444 (677)
72 2yjt_D ATP-dependent RNA helic 99.4 6.9E-17 2.4E-21 165.6 0.0 118 607-729 15-132 (170)
73 3jux_A Protein translocase sub 99.6 1.1E-13 3.9E-18 165.6 27.4 413 283-729 73-582 (822)
74 3eaq_A Heat resistant RNA depe 99.6 8.2E-15 2.8E-19 155.8 14.8 124 606-736 15-138 (212)
75 2xau_A PRE-mRNA-splicing facto 99.6 6E-15 2E-19 185.3 16.0 113 623-738 302-445 (773)
76 2gxq_A Heat resistant RNA depe 99.6 1.9E-14 6.3E-19 152.0 15.5 153 284-466 22-185 (207)
77 1t6n_A Probable ATP-dependent 99.6 2.8E-14 9.5E-19 152.4 16.5 159 285-473 36-206 (220)
78 3b6e_A Interferon-induced heli 99.5 9E-15 3.1E-19 155.2 10.2 131 283-443 31-177 (216)
79 1c4o_A DNA nucleotide excision 99.5 2.3E-12 7.8E-17 159.6 31.0 124 608-737 423-551 (664)
80 2oxc_A Probable ATP-dependent 99.5 9.7E-14 3.3E-18 149.4 15.7 151 285-466 46-208 (230)
81 2pl3_A Probable ATP-dependent 99.5 1.2E-13 4.1E-18 149.1 15.1 152 284-466 46-212 (236)
82 3i32_A Heat resistant RNA depe 99.5 9.4E-14 3.2E-18 154.9 14.1 124 606-736 12-135 (300)
83 1vec_A ATP-dependent RNA helic 99.5 2.4E-13 8.2E-18 143.3 16.1 152 285-466 25-187 (206)
84 1q0u_A Bstdead; DEAD protein, 99.5 1.4E-13 4.7E-18 146.9 14.0 160 284-474 25-198 (219)
85 1wrb_A DJVLGB; RNA helicase, D 99.5 4.7E-13 1.6E-17 146.2 17.5 167 270-466 24-219 (253)
86 1qde_A EIF4A, translation init 99.5 2.9E-13 9.9E-18 144.8 14.9 152 284-466 35-196 (224)
87 2ee1_A Chromodomain helicase-D 99.5 9.8E-15 3.3E-19 120.8 2.5 57 185-241 5-63 (64)
88 3ber_A Probable ATP-dependent 99.5 3.1E-13 1.1E-17 147.3 14.2 153 284-466 64-227 (249)
89 3bor_A Human initiation factor 99.4 5.9E-13 2E-17 144.0 14.5 153 285-466 52-214 (237)
90 2d7d_A Uvrabc system protein B 99.4 1.5E-11 5.1E-16 152.2 26.4 124 608-737 429-557 (661)
91 3iuy_A Probable ATP-dependent 99.4 3.8E-12 1.3E-16 136.5 15.9 153 284-466 41-208 (228)
92 1fp0_A KAP-1 corepressor; PHD 99.4 4.2E-13 1.4E-17 118.2 5.7 53 47-99 21-73 (88)
93 2epb_A Chromodomain-helicase-D 99.4 1.7E-13 5.8E-18 116.0 2.8 55 186-242 6-66 (68)
94 3dkp_A Probable ATP-dependent 99.3 3.1E-12 1E-16 138.9 12.9 153 285-466 51-220 (245)
95 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.1E-12 3.6E-17 109.1 5.5 52 48-99 6-57 (61)
96 3fe2_A Probable ATP-dependent 99.3 2E-11 6.8E-16 132.3 15.0 152 285-466 51-217 (242)
97 3ly5_A ATP-dependent RNA helic 99.3 1E-11 3.6E-16 136.3 12.8 152 285-466 76-242 (262)
98 2lri_C Autoimmune regulator; Z 99.3 1.8E-12 6E-17 109.0 4.1 50 49-98 10-59 (66)
99 2xb0_X Chromo domain-containin 99.3 8.9E-12 3E-16 133.7 10.2 132 967-1102 4-189 (270)
100 2puy_A PHD finger protein 21A; 99.2 8.8E-13 3E-17 109.4 1.0 51 48-98 2-52 (60)
101 2yql_A PHD finger protein 21A; 99.2 2.3E-12 7.9E-17 105.2 3.3 50 48-97 6-55 (56)
102 2ipc_A Preprotein translocase 99.2 1.3E-10 4.4E-15 141.8 19.6 144 283-476 77-237 (997)
103 1xwh_A Autoimmune regulator; P 99.2 3E-12 1E-16 108.3 3.5 50 48-97 5-54 (66)
104 2l5u_A Chromodomain-helicase-D 99.2 4.1E-12 1.4E-16 105.5 2.9 50 48-97 8-57 (61)
105 2vl7_A XPD; helicase, unknown 99.2 8.4E-10 2.9E-14 133.7 23.8 91 612-709 371-466 (540)
106 3u5n_A E3 ubiquitin-protein li 99.1 3.7E-11 1.2E-15 126.5 4.6 53 47-99 3-55 (207)
107 3fmo_B ATP-dependent RNA helic 99.1 5.3E-10 1.8E-14 125.1 14.4 152 284-466 113-277 (300)
108 1f62_A Transcription factor WS 99.1 3.5E-11 1.2E-15 96.4 3.1 45 53-97 2-49 (51)
109 3o36_A Transcription intermedi 99.1 5.4E-11 1.8E-15 122.9 5.2 51 49-99 2-52 (184)
110 2e6r_A Jumonji/ARID domain-con 99.0 5.3E-11 1.8E-15 107.4 3.1 50 48-97 13-65 (92)
111 1wev_A Riken cDNA 1110020M19; 99.0 3.6E-11 1.2E-15 107.6 0.1 53 50-102 15-76 (88)
112 2ro1_A Transcription intermedi 99.0 1.7E-10 5.7E-15 119.2 4.9 49 51-99 2-50 (189)
113 2e6s_A E3 ubiquitin-protein li 99.0 2.6E-10 8.9E-15 98.9 4.8 49 49-97 24-76 (77)
114 2yt5_A Metal-response element- 99.0 1.4E-10 4.9E-15 98.4 1.9 51 48-98 3-61 (66)
115 3asl_A E3 ubiquitin-protein li 98.9 3.2E-10 1.1E-14 96.6 3.8 46 52-97 19-68 (70)
116 3shb_A E3 ubiquitin-protein li 98.9 1E-09 3.4E-14 95.0 4.2 47 51-97 26-76 (77)
117 2l43_A N-teminal domain from h 98.9 5.2E-10 1.8E-14 99.9 2.2 47 49-97 23-74 (88)
118 2ku3_A Bromodomain-containing 98.9 4.8E-10 1.6E-14 95.6 1.6 48 48-97 13-65 (71)
119 3ask_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 113.7 3.9 49 49-97 172-224 (226)
120 4a15_A XPD helicase, ATP-depen 98.8 1.5E-08 5.1E-13 124.3 14.5 84 285-368 3-89 (620)
121 2lbm_A Transcriptional regulat 98.8 8.1E-10 2.8E-14 106.6 1.1 51 47-97 59-116 (142)
122 4gne_A Histone-lysine N-methyl 98.8 5.1E-09 1.8E-13 96.4 5.1 67 47-115 11-79 (107)
123 3v43_A Histone acetyltransfera 98.7 8.1E-09 2.8E-13 97.2 4.2 48 50-97 60-111 (112)
124 2kwj_A Zinc finger protein DPF 98.7 2.6E-09 8.8E-14 100.9 0.6 49 50-98 57-108 (114)
125 2dnt_A Chromodomain protein, Y 98.7 9.7E-09 3.3E-13 89.6 3.6 55 191-245 13-68 (78)
126 3f2u_A Chromobox protein homol 98.6 6.4E-09 2.2E-13 84.3 0.9 50 193-243 4-53 (55)
127 2rsn_A Chromo domain-containin 98.6 1.3E-08 4.6E-13 87.6 2.6 51 192-242 22-73 (75)
128 1q3l_A Heterochromatin protein 98.6 8.9E-09 3E-13 86.9 0.9 52 190-242 15-66 (69)
129 2dnv_A Chromobox protein homol 98.6 1.7E-08 5.7E-13 84.5 2.5 48 193-241 12-59 (64)
130 2k16_A Transcription initiatio 98.6 1.1E-08 3.9E-13 88.9 1.3 51 48-98 15-68 (75)
131 3crv_A XPD/RAD3 related DNA he 98.6 1.8E-07 6.1E-12 113.6 12.2 80 284-367 2-84 (551)
132 1ap0_A Modifier protein 1; chr 98.6 2.2E-08 7.6E-13 86.1 3.0 51 190-242 13-63 (73)
133 1g6z_A CLR4 protein; transfera 98.5 3.3E-08 1.1E-12 84.4 3.3 54 190-244 8-63 (70)
134 3llm_A ATP-dependent RNA helic 98.5 1.3E-07 4.4E-12 101.7 8.6 150 285-467 61-219 (235)
135 2ysm_A Myeloid/lymphoid or mix 98.5 2.8E-08 9.5E-13 93.6 2.6 47 51-97 54-103 (111)
136 3ql9_A Transcriptional regulat 98.5 6.8E-09 2.3E-13 98.4 -1.6 52 47-98 53-111 (129)
137 3mts_A Histone-lysine N-methyl 98.5 2.5E-08 8.4E-13 83.2 1.8 49 193-242 2-50 (64)
138 3fdt_A Chromobox protein homol 98.5 1.5E-08 5.2E-13 83.3 0.5 50 193-243 5-54 (59)
139 3i91_A Chromobox protein homol 98.5 3E-08 1E-12 80.1 1.1 49 192-241 4-52 (54)
140 3lwe_A M-phase phosphoprotein 98.5 2.1E-08 7.1E-13 83.4 0.1 53 192-244 5-57 (62)
141 2d9u_A Chromobox protein homol 98.4 5.5E-08 1.9E-12 83.8 1.9 52 190-243 10-61 (74)
142 2ysm_A Myeloid/lymphoid or mix 98.4 1.4E-07 4.9E-12 88.6 4.8 49 48-96 4-55 (111)
143 1pfb_A Polycomb protein; chrom 98.4 3.7E-08 1.3E-12 79.9 0.5 48 193-241 5-52 (55)
144 3h91_A Chromobox protein homol 98.4 4.6E-08 1.6E-12 78.9 0.9 48 193-241 5-52 (54)
145 2k1b_A Chromobox protein homol 98.4 6.9E-08 2.4E-12 82.4 2.0 50 190-241 21-70 (73)
146 1wen_A Inhibitor of growth fam 98.4 2.1E-07 7.3E-12 79.3 5.0 46 50-98 15-65 (71)
147 2b2y_C CHD-1, chromodomain-hel 98.4 5.8E-08 2E-12 89.2 1.3 75 99-176 13-100 (115)
148 1x3p_A Cpsrp43; chromo-2 domai 98.4 2.9E-08 9.9E-13 79.7 -0.8 45 193-241 2-48 (54)
149 2kvm_A Chromobox protein homol 98.4 9.6E-08 3.3E-12 82.4 2.1 51 193-244 15-65 (74)
150 1weu_A Inhibitor of growth fam 98.4 4.3E-07 1.5E-11 80.9 6.2 48 49-99 34-86 (91)
151 4hae_A CDY-like 2, chromodomai 98.4 1.1E-08 3.6E-13 89.6 -4.2 53 189-241 21-74 (81)
152 1pdq_A Polycomb protein; methy 98.3 5.8E-08 2E-12 82.5 0.1 49 192-241 21-69 (72)
153 3c6w_A P28ING5, inhibitor of g 98.3 1.5E-07 5.2E-12 77.1 1.5 45 50-97 8-57 (59)
154 2vnf_A ING 4, P29ING4, inhibit 98.3 2E-07 6.8E-12 76.9 1.7 45 50-97 9-58 (60)
155 3g7l_A Chromo domain-containin 98.2 2.3E-07 8E-12 76.7 1.4 49 192-241 8-57 (61)
156 2lv9_A Histone-lysine N-methyl 98.2 6.8E-07 2.3E-11 81.6 4.4 44 53-97 32-75 (98)
157 2g6q_A Inhibitor of growth pro 98.2 2.9E-07 1E-11 76.2 1.7 45 50-97 10-59 (62)
158 2rso_A Chromatin-associated pr 98.2 9.4E-07 3.2E-11 79.3 3.6 51 193-243 32-85 (92)
159 2jmi_A Protein YNG1, ING1 homo 98.1 9.1E-07 3.1E-11 78.6 3.3 46 49-97 24-75 (90)
160 1wil_A KIAA1045 protein; ring 98.0 9.4E-07 3.2E-11 75.0 1.0 49 50-98 14-76 (89)
161 2kwj_A Zinc finger protein DPF 97.7 4.8E-06 1.6E-10 78.4 0.0 45 52-96 2-59 (114)
162 2dnv_A Chromobox protein homol 97.7 4.9E-06 1.7E-10 69.5 -0.6 51 100-174 11-61 (64)
163 3mts_A Histone-lysine N-methyl 97.6 5.1E-06 1.8E-10 69.1 -0.8 39 100-154 1-39 (64)
164 2d9u_A Chromobox protein homol 97.6 7.2E-06 2.5E-10 70.6 -0.2 51 100-174 11-61 (74)
165 2epb_A Chromodomain-helicase-D 97.6 1.3E-05 4.4E-10 67.6 1.1 62 89-173 5-66 (68)
166 3h91_A Chromobox protein homol 97.6 5.3E-06 1.8E-10 66.8 -1.6 49 101-173 5-53 (54)
167 1x4i_A Inhibitor of growth pro 97.6 1.8E-05 6.3E-10 67.1 1.4 44 51-97 6-54 (70)
168 3i91_A Chromobox protein homol 97.5 6.9E-06 2.3E-10 66.2 -1.5 49 101-173 5-53 (54)
169 1pfb_A Polycomb protein; chrom 97.5 6.9E-06 2.4E-10 66.4 -1.6 49 101-173 5-53 (55)
170 1q3l_A Heterochromatin protein 97.5 7.9E-06 2.7E-10 68.9 -1.5 50 100-173 17-66 (69)
171 3f2u_A Chromobox protein homol 97.5 8.1E-06 2.8E-10 66.0 -1.5 49 101-173 4-52 (55)
172 2rsn_A Chromo domain-containin 97.5 1.4E-05 4.8E-10 68.8 -0.2 52 100-173 22-73 (75)
173 3o70_A PHD finger protein 13; 97.5 5.1E-05 1.8E-09 64.0 3.1 47 49-97 17-66 (68)
174 1g6z_A CLR4 protein; transfera 97.5 3.3E-05 1.1E-09 65.8 1.9 53 100-174 9-62 (70)
175 2k1b_A Chromobox protein homol 97.5 1.1E-05 3.7E-10 68.8 -1.2 50 100-173 22-71 (73)
176 2ee1_A Chromodomain helicase-D 97.4 2.5E-05 8.4E-10 64.7 0.5 51 101-172 13-63 (64)
177 1we9_A PHD finger family prote 97.4 5E-05 1.7E-09 63.5 2.4 50 49-98 4-58 (64)
178 3lwe_A M-phase phosphoprotein 97.4 2.2E-05 7.4E-10 65.1 -0.2 52 100-174 5-56 (62)
179 2kvm_A Chromobox protein homol 97.4 1.3E-05 4.6E-10 68.9 -1.6 50 100-173 14-63 (74)
180 2dnt_A Chromodomain protein, Y 97.3 2.8E-05 9.6E-10 67.7 -0.2 54 100-175 14-67 (78)
181 1pdq_A Polycomb protein; methy 97.3 1.5E-05 5.3E-10 67.7 -1.9 39 100-154 21-59 (72)
182 3v43_A Histone acetyltransfera 97.3 2.4E-05 8.1E-10 73.4 -0.9 46 51-96 5-62 (112)
183 3fdt_A Chromobox protein homol 97.3 1.6E-05 5.5E-10 65.2 -1.8 50 101-174 5-54 (59)
184 1ap0_A Modifier protein 1; chr 97.3 2E-05 6.7E-10 67.7 -1.5 52 100-175 14-65 (73)
185 3g7l_A Chromo domain-containin 97.2 3.7E-05 1.3E-09 63.5 -0.7 40 101-155 9-48 (61)
186 2ri7_A Nucleosome-remodeling f 97.2 3.2E-05 1.1E-09 78.8 -1.6 48 49-97 6-58 (174)
187 1wee_A PHD finger family prote 97.2 0.00015 5.1E-09 62.2 2.7 47 50-97 15-65 (72)
188 2vpb_A Hpygo1, pygopus homolog 97.1 4.8E-05 1.6E-09 63.5 -1.0 45 50-96 7-64 (65)
189 2xb1_A Pygopus homolog 2, B-ce 97.1 8.6E-05 2.9E-09 68.5 0.6 44 52-97 4-60 (105)
190 1wem_A Death associated transc 97.0 9.5E-05 3.3E-09 64.1 -0.6 46 49-97 14-69 (76)
191 3e1s_A Exodeoxyribonuclease V, 97.0 0.005 1.7E-07 74.5 14.1 132 283-469 187-318 (574)
192 4b3f_X DNA-binding protein smu 96.9 0.0047 1.6E-07 76.2 14.1 68 284-355 188-256 (646)
193 2rso_A Chromatin-associated pr 96.9 0.00018 6E-09 64.5 0.7 55 100-175 31-86 (92)
194 3upu_A ATP-dependent DNA helic 96.9 0.006 2.1E-07 71.9 14.2 63 284-346 24-87 (459)
195 2gk6_A Regulator of nonsense t 96.9 0.0077 2.6E-07 73.9 15.5 172 284-469 179-376 (624)
196 1wew_A DNA-binding family prot 96.8 0.00026 8.8E-09 61.6 1.1 46 50-98 15-72 (78)
197 1x3p_A Cpsrp43; chromo-2 domai 96.8 0.00022 7.4E-09 57.1 0.4 38 101-154 2-39 (54)
198 4hae_A CDY-like 2, chromodomai 96.8 0.00011 3.8E-09 64.1 -1.5 40 100-154 24-63 (81)
199 2wjy_A Regulator of nonsense t 96.8 0.011 3.8E-07 74.2 15.6 169 284-469 355-552 (800)
200 1wep_A PHF8; structural genomi 96.7 0.00029 9.9E-09 61.5 0.5 49 50-99 11-64 (79)
201 2xzl_A ATP-dependent helicase 96.6 0.012 4E-07 74.1 14.5 168 284-469 359-554 (802)
202 2b2y_C CHD-1, chromodomain-hel 96.6 0.00055 1.9E-08 63.0 1.4 50 192-241 37-96 (115)
203 2rsd_A E3 SUMO-protein ligase 96.6 0.00092 3.1E-08 56.5 2.6 42 52-96 11-63 (68)
204 2h1e_A Chromo domain protein 1 96.6 0.00038 1.3E-08 70.4 0.1 50 192-241 13-83 (177)
205 2kgg_A Histone demethylase jar 96.5 0.00047 1.6E-08 54.9 0.0 41 54-96 5-52 (52)
206 3kqi_A GRC5, PHD finger protei 96.4 0.00057 2E-08 59.0 0.5 47 50-97 9-60 (75)
207 3o7a_A PHD finger protein 13 v 96.3 0.0014 4.8E-08 52.1 1.8 44 52-97 5-51 (52)
208 2b2y_A CHD-1, chromodomain-hel 96.2 0.0013 4.3E-08 67.2 1.6 49 193-241 38-96 (187)
209 1w36_D RECD, exodeoxyribonucle 96.2 0.022 7.4E-07 69.6 12.6 149 287-472 151-304 (608)
210 2o0j_A Terminase, DNA packagin 95.9 0.031 1.1E-06 63.8 11.4 154 284-479 162-324 (385)
211 3kv5_D JMJC domain-containing 95.7 0.0013 4.4E-08 77.3 -1.0 48 48-98 34-88 (488)
212 3lqh_A Histone-lysine N-methyl 95.6 0.0029 9.9E-08 64.2 1.1 49 52-100 3-65 (183)
213 2orw_A Thymidine kinase; TMTK, 95.1 0.057 2E-06 55.0 9.0 37 305-342 4-40 (184)
214 3mwy_W Chromo domain-containin 95.1 0.0035 1.2E-07 79.3 -0.2 39 192-230 38-95 (800)
215 3cpe_A Terminase, DNA packagin 95.0 0.072 2.5E-06 64.8 11.1 150 284-469 162-316 (592)
216 3pur_A Lysine-specific demethy 94.8 0.0093 3.2E-07 69.3 2.4 36 62-97 57-93 (528)
217 3a1b_A DNA (cytosine-5)-methyl 94.8 0.0068 2.3E-07 59.1 0.9 60 47-108 75-142 (159)
218 3kup_A Chromobox protein homol 94.4 0.007 2.4E-07 50.3 -0.0 47 192-239 13-59 (65)
219 2j9r_A Thymidine kinase; TK1, 94.4 0.13 4.5E-06 53.4 9.5 35 307-342 31-65 (214)
220 3lfu_A DNA helicase II; SF1 he 94.3 0.19 6.6E-06 61.6 12.8 66 285-356 9-78 (647)
221 4gne_A Histone-lysine N-methyl 94.1 0.021 7E-07 52.5 2.5 41 51-92 58-98 (107)
222 3vkw_A Replicase large subunit 94.1 0.07 2.4E-06 61.7 7.4 109 307-470 164-273 (446)
223 3kv4_A PHD finger protein 8; e 93.9 0.0051 1.7E-07 71.1 -2.5 44 52-98 6-56 (447)
224 2b8t_A Thymidine kinase; deoxy 93.9 0.23 7.8E-06 52.2 10.4 39 303-342 11-49 (223)
225 1a5t_A Delta prime, HOLB; zinc 93.4 0.39 1.3E-05 53.7 12.0 46 286-331 3-51 (334)
226 2pv0_B DNA (cytosine-5)-methyl 92.9 0.014 4.9E-07 65.3 -0.9 51 47-97 89-147 (386)
227 1xx6_A Thymidine kinase; NESG, 92.6 0.24 8.1E-06 50.8 7.9 37 305-342 9-45 (191)
228 2cqq_A RSGI RUH-037, DNAJ homo 92.4 0.19 6.4E-06 42.6 5.5 48 968-1016 10-58 (72)
229 2fmm_A Chromobox protein homol 92.4 0.019 6.6E-07 49.0 -0.6 48 192-241 16-64 (74)
230 3i3c_A Chromobox protein homol 92.2 0.014 4.9E-07 49.7 -1.6 48 192-240 23-70 (75)
231 1l8q_A Chromosomal replication 92.0 1.3 4.6E-05 48.9 13.8 41 303-344 36-76 (324)
232 4bbq_A Lysine-specific demethy 91.9 0.042 1.4E-06 51.6 1.1 35 63-97 75-113 (117)
233 3p7j_A Heterochromatin protein 91.9 0.021 7E-07 50.0 -1.0 49 192-241 26-75 (87)
234 3q6s_A Chromobox protein homol 91.9 0.024 8.2E-07 48.8 -0.6 48 192-240 10-57 (78)
235 3u61_B DNA polymerase accessor 91.5 1 3.4E-05 49.9 12.1 41 428-468 105-147 (324)
236 3syl_A Protein CBBX; photosynt 91.5 0.11 3.9E-06 57.1 4.2 39 304-342 67-108 (309)
237 4eef_G F-HB80.4, designed hema 91.1 0.073 2.5E-06 44.6 1.5 46 969-1014 23-69 (74)
238 2orv_A Thymidine kinase; TP4A 90.9 0.53 1.8E-05 49.4 8.3 37 305-342 20-56 (234)
239 2chg_A Replication factor C sm 90.6 2.3 7.7E-05 43.3 13.1 27 305-331 39-65 (226)
240 3rsn_A SET1/ASH2 histone methy 90.5 0.18 6E-06 50.2 3.9 45 52-97 6-58 (177)
241 2k9n_A MYB24; R2R3 domain, DNA 90.3 0.66 2.2E-05 42.6 7.5 38 968-1007 3-40 (107)
242 2eqr_A N-COR1, N-COR, nuclear 90.1 0.36 1.2E-05 39.4 4.9 41 967-1010 13-53 (61)
243 1gv2_A C-MYB, MYB proto-oncoge 90.0 0.81 2.8E-05 41.8 7.8 39 967-1007 5-43 (105)
244 2p65_A Hypothetical protein PF 88.8 2.9 9.8E-05 41.3 11.7 27 304-330 43-69 (187)
245 2yqk_A Arginine-glutamic acid 88.1 0.54 1.8E-05 38.7 4.6 41 967-1010 10-51 (63)
246 2cjj_A Radialis; plant develop 88.0 0.81 2.8E-05 40.7 6.0 49 968-1016 10-59 (93)
247 3e2i_A Thymidine kinase; Zn-bi 87.9 1.5 5.2E-05 45.4 8.9 37 305-342 29-65 (219)
248 1jbk_A CLPB protein; beta barr 87.9 3.3 0.00011 40.9 11.5 28 303-330 42-69 (195)
249 1h8a_C AMV V-MYB, MYB transfor 87.8 1.3 4.3E-05 42.1 7.7 39 967-1007 28-66 (128)
250 3bos_A Putative DNA replicatio 87.8 0.68 2.3E-05 48.3 6.5 29 303-331 51-79 (242)
251 1iqp_A RFCS; clamp loader, ext 87.7 2.1 7.1E-05 47.0 10.7 25 306-330 48-72 (327)
252 2cqr_A RSGI RUH-043, DNAJ homo 87.5 0.73 2.5E-05 39.1 5.1 46 967-1012 19-65 (73)
253 1njg_A DNA polymerase III subu 87.4 2.2 7.5E-05 44.0 10.2 44 287-330 28-71 (250)
254 1w4r_A Thymidine kinase; type 87.3 2.3 7.9E-05 43.3 9.7 37 305-342 21-57 (195)
255 2gno_A DNA polymerase III, gam 86.9 2.2 7.5E-05 46.9 10.2 38 290-327 2-41 (305)
256 1h89_C C-MYB, MYB proto-oncoge 86.9 0.69 2.4E-05 45.7 5.5 110 968-1101 8-130 (159)
257 2iw5_B Protein corest, REST co 86.6 0.48 1.6E-05 48.6 4.2 47 967-1016 134-180 (235)
258 2cu7_A KIAA1915 protein; nucle 85.8 1.2 4E-05 37.7 5.6 49 967-1018 10-58 (72)
259 2z4s_A Chromosomal replication 85.7 2.5 8.6E-05 49.1 10.3 39 304-342 130-169 (440)
260 2crg_A Metastasis associated p 85.4 0.89 3E-05 38.2 4.6 46 967-1016 9-55 (70)
261 3eie_A Vacuolar protein sortin 85.3 0.92 3.1E-05 50.3 6.1 37 304-344 51-87 (322)
262 1sxj_D Activator 1 41 kDa subu 85.2 1.6 5.6E-05 48.5 8.3 25 305-329 59-83 (353)
263 1wgx_A KIAA1903 protein; MYB D 84.9 1.1 3.7E-05 37.9 4.8 41 968-1008 10-51 (73)
264 2v1u_A Cell division control p 84.8 1.9 6.6E-05 48.4 8.7 44 287-330 24-70 (387)
265 2qp9_X Vacuolar protein sortin 84.5 0.81 2.8E-05 51.6 5.3 35 304-342 84-118 (355)
266 4b4t_J 26S protease regulatory 84.2 2 6.8E-05 49.0 8.2 48 301-352 179-226 (405)
267 2ku7_A MLL1 PHD3-CYP33 RRM chi 84.1 0.31 1E-05 46.7 1.3 37 63-99 2-45 (140)
268 3osg_A MYB21; transcription-DN 84.0 3.1 0.00011 39.3 8.3 38 967-1007 12-49 (126)
269 3zqc_A MYB3; transcription-DNA 83.9 3 0.0001 39.6 8.2 37 969-1007 5-41 (131)
270 2qby_B CDC6 homolog 3, cell di 83.8 2.5 8.5E-05 47.6 9.1 44 287-330 25-71 (384)
271 1sxj_B Activator 1 37 kDa subu 83.8 3.1 0.00011 45.4 9.6 25 306-330 44-68 (323)
272 1x58_A Hypothetical protein 49 83.7 0.63 2.2E-05 37.8 2.7 24 1078-1101 5-28 (62)
273 2yus_A SWI/SNF-related matrix- 83.6 2 6.8E-05 37.0 6.1 39 967-1008 19-57 (79)
274 2bjv_A PSP operon transcriptio 83.5 3.5 0.00012 43.9 9.6 47 295-342 20-66 (265)
275 3uk6_A RUVB-like 2; hexameric 83.4 2 6.9E-05 48.2 8.0 53 287-341 49-105 (368)
276 2chq_A Replication factor C sm 82.9 0.97 3.3E-05 49.5 5.0 25 306-330 40-64 (319)
277 1fnn_A CDC6P, cell division co 82.6 7.2 0.00025 43.7 12.3 53 287-339 22-79 (389)
278 1jr3_A DNA polymerase III subu 82.6 4.7 0.00016 45.0 10.7 44 287-330 21-64 (373)
279 2ct0_A Non-SMC element 1 homol 82.1 0.46 1.6E-05 40.4 1.5 47 50-98 14-61 (74)
280 1vyx_A ORF K3, K3RING; zinc-bi 81.9 0.12 4E-06 42.2 -2.3 48 49-99 4-57 (60)
281 2yum_A ZZZ3 protein, zinc fing 81.8 2.3 7.9E-05 36.1 5.8 49 967-1015 9-60 (75)
282 1sxj_C Activator 1 40 kDa subu 81.6 4.1 0.00014 45.3 9.6 38 293-330 33-72 (340)
283 3h4m_A Proteasome-activating n 80.9 1.3 4.5E-05 47.8 5.1 37 302-342 49-85 (285)
284 1xwi_A SKD1 protein; VPS4B, AA 80.6 1.4 5E-05 48.8 5.3 38 304-344 45-82 (322)
285 3vfd_A Spastin; ATPase, microt 78.8 2.9 0.0001 47.5 7.3 41 304-348 148-188 (389)
286 3sjm_A Telomeric repeat-bindin 78.7 0.96 3.3E-05 37.3 2.2 22 1080-1101 10-31 (64)
287 2zan_A Vacuolar protein sortin 78.1 2.4 8.1E-05 49.3 6.3 43 303-348 166-208 (444)
288 1sxj_E Activator 1 40 kDa subu 77.4 8.3 0.00028 42.8 10.4 42 291-332 20-64 (354)
289 2elk_A SPCC24B10.08C protein; 77.3 3 0.0001 33.5 4.7 40 967-1008 10-50 (58)
290 2qz4_A Paraplegin; AAA+, SPG7, 77.2 6.5 0.00022 41.4 9.1 37 303-343 38-74 (262)
291 1x41_A Transcriptional adaptor 76.6 3.8 0.00013 33.1 5.3 42 966-1009 8-49 (60)
292 3t15_A Ribulose bisphosphate c 76.4 4.1 0.00014 44.4 7.2 37 304-344 36-72 (293)
293 1w0t_A Telomeric repeat bindin 76.4 1.2 4.2E-05 35.0 2.2 20 1082-1101 3-22 (53)
294 1iym_A EL5; ring-H2 finger, ub 76.0 1.4 4.9E-05 34.5 2.6 44 51-98 5-52 (55)
295 2d8s_A Cellular modulator of i 75.7 0.68 2.3E-05 40.1 0.5 48 50-99 14-68 (80)
296 1ojl_A Transcriptional regulat 75.6 10 0.00035 41.4 10.3 47 295-342 16-62 (304)
297 2qby_A CDC6 homolog 1, cell di 74.3 4.7 0.00016 45.1 7.3 44 287-330 25-71 (386)
298 2elk_A SPCC24B10.08C protein; 74.2 1.6 5.4E-05 35.2 2.3 21 1081-1101 9-29 (58)
299 1uaa_A REP helicase, protein ( 72.4 4 0.00014 50.1 6.6 66 285-356 2-71 (673)
300 1x4j_A Ring finger protein 38; 72.0 0.67 2.3E-05 39.3 -0.4 46 50-99 22-70 (75)
301 1sxj_A Activator 1 95 kDa subu 71.9 10 0.00036 44.7 9.8 25 304-328 77-101 (516)
302 3d8b_A Fidgetin-like protein 1 71.7 2.8 9.5E-05 47.1 4.5 37 303-343 116-152 (357)
303 1x41_A Transcriptional adaptor 71.6 2.3 8E-05 34.4 2.8 22 1080-1101 7-28 (60)
304 3cf0_A Transitional endoplasmi 71.4 4 0.00014 44.6 5.6 39 302-344 47-85 (301)
305 3pvs_A Replication-associated 70.7 10 0.00035 44.0 9.1 24 305-328 51-74 (447)
306 4dzz_A Plasmid partitioning pr 69.8 15 0.0005 37.0 9.2 38 310-348 8-47 (206)
307 2cvh_A DNA repair and recombin 69.4 17 0.00057 36.9 9.6 54 293-350 8-64 (220)
308 3ec2_A DNA replication protein 69.3 7 0.00024 38.7 6.4 63 287-349 16-83 (180)
309 3kl4_A SRP54, signal recogniti 69.1 15 0.0005 42.4 9.8 37 306-342 99-135 (433)
310 1guu_A C-MYB, MYB proto-oncoge 68.8 2.3 7.9E-05 33.2 2.1 20 1082-1101 4-23 (52)
311 1gvd_A MYB proto-oncogene prot 68.5 2.5 8.4E-05 33.0 2.2 20 1082-1101 4-23 (52)
312 1ity_A TRF1; helix-turn-helix, 68.3 2.8 9.5E-05 35.0 2.6 22 1080-1101 9-30 (69)
313 3nw0_A Non-structural maintena 68.2 1.4 4.8E-05 46.5 1.0 45 51-97 180-225 (238)
314 3k1j_A LON protease, ATP-depen 68.0 13 0.00044 44.9 9.6 56 292-347 48-116 (604)
315 2yus_A SWI/SNF-related matrix- 67.7 3.2 0.00011 35.7 2.9 22 1079-1100 16-37 (79)
316 2ecl_A Ring-box protein 2; RNF 67.5 1.3 4.5E-05 38.2 0.5 31 65-99 44-74 (81)
317 1guu_A C-MYB, MYB proto-oncoge 67.0 9.8 0.00033 29.5 5.5 41 967-1009 4-44 (52)
318 1gvd_A MYB proto-oncogene prot 67.0 7.2 0.00025 30.3 4.7 40 967-1008 4-43 (52)
319 2kiz_A E3 ubiquitin-protein li 67.0 0.83 2.8E-05 37.9 -0.9 44 51-98 14-60 (69)
320 2d9a_A B-MYB, MYB-related prot 67.0 3.2 0.00011 33.5 2.7 22 1080-1101 7-28 (60)
321 2ect_A Ring finger protein 126 66.9 3 0.0001 35.3 2.7 45 51-99 15-62 (78)
322 1pjr_A PCRA; DNA repair, DNA r 66.6 8.3 0.00029 47.7 7.7 55 285-345 11-68 (724)
323 1v87_A Deltex protein 2; ring- 66.3 1.2 4E-05 41.1 -0.1 49 51-99 25-92 (114)
324 1bor_A Transcription factor PM 65.9 8.7 0.0003 30.3 5.1 43 50-99 5-47 (56)
325 4a69_C Nuclear receptor corepr 65.8 6.4 0.00022 35.0 4.6 44 964-1010 41-84 (94)
326 2w58_A DNAI, primosome compone 65.5 7.2 0.00025 39.4 5.8 34 305-339 55-88 (202)
327 2ltp_A Nuclear receptor corepr 68.7 1.3 4.5E-05 39.1 0.0 51 964-1017 14-64 (89)
328 3dm5_A SRP54, signal recogniti 64.9 13 0.00044 42.9 8.2 36 306-341 102-137 (443)
329 2ecm_A Ring finger and CHY zin 64.9 1.3 4.5E-05 34.7 -0.1 44 51-98 5-52 (55)
330 2dim_A Cell division cycle 5-l 64.8 3.8 0.00013 34.2 2.8 22 1080-1101 8-29 (70)
331 2ep4_A Ring finger protein 24; 64.7 0.85 2.9E-05 38.4 -1.3 49 51-103 15-66 (74)
332 3hu3_A Transitional endoplasmi 64.1 5.9 0.0002 46.6 5.3 36 302-341 236-271 (489)
333 2xag_B REST corepressor 1; ami 63.7 4.6 0.00016 46.5 4.1 46 967-1015 381-426 (482)
334 1gm5_A RECG; helicase, replica 63.5 21 0.00073 44.3 10.4 97 606-705 399-500 (780)
335 3k1l_B Fancl; UBC, ring, RWD, 63.2 0.88 3E-05 49.9 -1.8 48 51-98 308-370 (381)
336 3crv_A XPD/RAD3 related DNA he 63.1 26 0.00089 41.6 10.9 98 613-720 381-486 (551)
337 2cu7_A KIAA1915 protein; nucle 62.0 4.4 0.00015 34.0 2.7 22 1080-1101 8-29 (72)
338 2yum_A ZZZ3 protein, zinc fing 61.5 4.5 0.00015 34.3 2.7 21 1081-1101 8-28 (75)
339 2l0b_A E3 ubiquitin-protein li 60.9 1.3 4.5E-05 39.1 -0.8 46 50-99 39-87 (91)
340 4a0k_B E3 ubiquitin-protein li 60.5 2 7E-05 39.9 0.4 46 49-98 46-109 (117)
341 1w5s_A Origin recognition comp 60.4 8.2 0.00028 43.7 5.6 44 287-330 27-78 (412)
342 1r6b_X CLPA protein; AAA+, N-t 59.8 29 0.00098 43.0 10.8 29 303-331 206-234 (758)
343 3dpl_R Ring-box protein 1; ubi 59.4 1.9 6.4E-05 39.4 -0.1 46 49-98 35-98 (106)
344 1qvr_A CLPB protein; coiled co 59.0 30 0.001 43.5 11.0 28 303-330 190-217 (854)
345 2ce7_A Cell division protein F 58.6 14 0.00048 43.1 7.2 34 304-341 49-82 (476)
346 2aje_A Telomere repeat-binding 58.3 4.7 0.00016 36.6 2.4 23 1079-1101 11-33 (105)
347 2d9a_A B-MYB, MYB-related prot 57.6 13 0.00045 29.8 4.7 41 967-1009 9-49 (60)
348 3u4q_A ATP-dependent helicase/ 57.2 14 0.00048 48.7 7.6 57 283-345 8-69 (1232)
349 2ysl_A Tripartite motif-contai 57.2 4.9 0.00017 33.4 2.2 48 50-99 19-67 (73)
350 2ckx_A NGTRF1, telomere bindin 57.2 50 0.0017 28.5 8.6 45 969-1015 3-51 (83)
351 1chc_A Equine herpes virus-1 r 56.3 2.1 7.3E-05 35.2 -0.2 46 51-100 5-51 (68)
352 2llk_A Cyclin-D-binding MYB-li 56.0 6.3 0.00021 33.3 2.6 24 1078-1101 20-43 (73)
353 3sxu_A DNA polymerase III subu 55.0 15 0.00053 35.6 5.6 38 607-644 22-59 (150)
354 2lq6_A Bromodomain-containing 54.6 3.6 0.00012 36.1 0.9 28 51-78 17-48 (87)
355 1nlf_A Regulatory protein REPA 54.0 61 0.0021 34.3 11.0 53 302-354 28-89 (279)
356 2zts_A Putative uncharacterize 53.8 15 0.00051 38.1 5.9 53 302-354 28-80 (251)
357 2din_A Cell division cycle 5-l 52.7 22 0.00075 29.1 5.4 46 967-1016 10-55 (66)
358 2qgz_A Helicase loader, putati 52.6 13 0.00045 40.6 5.3 35 304-339 152-187 (308)
359 2q6t_A DNAB replication FORK h 52.5 25 0.00084 40.6 7.9 60 292-351 188-247 (444)
360 3hjh_A Transcription-repair-co 52.3 19 0.00066 42.0 6.9 58 303-365 13-71 (483)
361 2ecn_A Ring finger protein 141 52.2 1.9 6.6E-05 35.7 -1.2 45 51-100 15-59 (70)
362 2yur_A Retinoblastoma-binding 52.1 3.3 0.00011 34.8 0.3 54 50-105 14-68 (74)
363 1w0t_A Telomeric repeat bindin 51.9 18 0.0006 28.2 4.5 39 968-1008 4-44 (53)
364 3oiy_A Reverse gyrase helicase 51.8 34 0.0012 38.6 9.0 95 606-703 46-147 (414)
365 3bh0_A DNAB-like replicative h 51.8 34 0.0012 37.4 8.6 60 293-353 57-116 (315)
366 2din_A Cell division cycle 5-l 51.3 8.8 0.0003 31.5 2.7 22 1080-1101 8-29 (66)
367 2dim_A Cell division cycle 5-l 51.3 17 0.00058 30.1 4.6 40 967-1008 10-49 (70)
368 3cf2_A TER ATPase, transitiona 51.1 15 0.00051 45.7 6.0 42 303-348 510-551 (806)
369 2px0_A Flagellar biosynthesis 50.8 24 0.00081 38.3 7.0 37 304-340 105-141 (296)
370 4bbq_A Lysine-specific demethy 50.4 3 0.0001 38.7 -0.3 36 51-97 7-42 (117)
371 2roh_A RTBP1, telomere binding 50.3 7.5 0.00025 36.3 2.3 22 1080-1101 30-51 (122)
372 2zpa_A Uncharacterized protein 50.0 29 0.00098 42.1 8.0 53 284-342 174-226 (671)
373 3kup_A Chromobox protein homol 49.7 6.6 0.00022 32.4 1.7 28 131-163 28-55 (65)
374 3n70_A Transport activator; si 47.5 28 0.00095 33.0 6.2 46 295-341 15-60 (145)
375 2d8t_A Dactylidin, ring finger 47.3 5.9 0.0002 32.9 1.1 44 51-99 15-59 (71)
376 6rxn_A Rubredoxin; electron tr 47.0 9.6 0.00033 29.0 2.1 35 64-99 5-40 (46)
377 4b4t_M 26S protease regulatory 46.4 10 0.00035 43.7 3.2 46 302-351 213-258 (434)
378 4b4t_L 26S protease subunit RP 46.2 10 0.00035 43.7 3.2 46 302-351 213-258 (437)
379 2ckl_B Ubiquitin ligase protei 45.8 4 0.00014 40.3 -0.2 46 51-99 54-100 (165)
380 2ecy_A TNF receptor-associated 45.7 4.2 0.00015 33.2 -0.1 45 51-99 15-60 (66)
381 2ecj_A Tripartite motif-contai 45.7 6.3 0.00022 30.9 1.0 44 51-95 15-58 (58)
382 2r6a_A DNAB helicase, replicat 44.5 33 0.0011 39.6 7.4 58 293-350 192-249 (454)
383 1e8j_A Rubredoxin; iron-sulfur 44.4 27 0.00092 27.3 4.3 36 64-100 4-47 (52)
384 2egp_A Tripartite motif-contai 43.7 12 0.00043 31.3 2.6 48 51-99 12-63 (79)
385 4b4t_I 26S protease regulatory 43.3 14 0.00047 42.4 3.6 47 302-352 214-260 (437)
386 2iw5_B Protein corest, REST co 42.6 29 0.001 35.6 5.5 54 1041-1103 102-155 (235)
387 3lrq_A E3 ubiquitin-protein li 42.5 3.6 0.00012 37.0 -1.1 46 51-99 22-68 (100)
388 4ayc_A E3 ubiquitin-protein li 42.2 4.4 0.00015 38.8 -0.6 44 51-98 53-96 (138)
389 1e0b_A SWI6 protein; chromatin 41.7 4.9 0.00017 33.4 -0.3 25 192-216 11-36 (68)
390 3i42_A Response regulator rece 41.7 69 0.0024 28.6 7.8 96 622-723 25-124 (127)
391 3ng2_A RNF4, snurf, ring finge 41.5 4.3 0.00015 33.5 -0.7 45 51-99 10-61 (71)
392 2c9o_A RUVB-like 1; hexameric 41.3 16 0.00055 42.3 3.9 45 302-348 61-105 (456)
393 3i3c_A Chromobox protein homol 41.3 7.2 0.00025 33.1 0.7 29 130-163 37-65 (75)
394 1e4u_A Transcriptional repress 41.1 8.6 0.00029 32.8 1.2 47 51-101 11-62 (78)
395 4a1f_A DNAB helicase, replicat 40.8 49 0.0017 36.6 7.6 55 293-348 35-89 (338)
396 3bgw_A DNAB-like replicative h 40.8 32 0.0011 39.7 6.4 58 292-350 185-242 (444)
397 4b4t_K 26S protease regulatory 40.7 14 0.00047 42.5 3.2 44 302-349 204-247 (428)
398 1ity_A TRF1; helix-turn-helix, 40.3 48 0.0016 27.3 5.7 40 968-1009 12-53 (69)
399 2xeu_A Ring finger protein 4; 40.2 4 0.00014 32.8 -1.1 45 51-99 3-54 (64)
400 1weq_A PHD finger protein 7; s 40.1 61 0.0021 28.0 6.3 33 63-98 46-79 (85)
401 2k9n_A MYB24; R2R3 domain, DNA 40.1 45 0.0016 30.0 6.0 48 968-1018 55-102 (107)
402 4rxn_A Rubredoxin; electron tr 40.1 15 0.00052 29.0 2.3 35 64-99 4-46 (54)
403 4b4t_H 26S protease regulatory 39.8 13 0.00046 42.9 2.8 46 302-351 241-286 (467)
404 2llk_A Cyclin-D-binding MYB-li 39.6 22 0.00074 30.0 3.4 41 967-1011 24-64 (73)
405 2aje_A Telomere repeat-binding 39.6 1.2E+02 0.0043 27.2 8.6 69 969-1047 16-88 (105)
406 3nhm_A Response regulator; pro 39.4 1.9E+02 0.0066 25.6 10.7 95 622-722 25-123 (133)
407 3co5_A Putative two-component 39.1 19 0.00065 34.2 3.4 51 301-356 24-74 (143)
408 1q57_A DNA primase/helicase; d 38.9 41 0.0014 39.3 7.0 57 294-350 232-288 (503)
409 2ysj_A Tripartite motif-contai 38.8 5.1 0.00017 32.3 -0.7 44 50-95 19-63 (63)
410 2y1n_A E3 ubiquitin-protein li 38.7 5.2 0.00018 45.1 -0.8 54 49-105 330-383 (389)
411 1gv2_A C-MYB, MYB proto-oncoge 38.2 33 0.0011 30.8 4.7 42 968-1012 58-99 (105)
412 3osg_A MYB21; transcription-DN 38.1 44 0.0015 31.1 5.7 48 968-1018 64-111 (126)
413 2r44_A Uncharacterized protein 37.4 19 0.00065 39.5 3.6 30 299-328 41-70 (331)
414 3ui2_A Signal recognition part 37.4 15 0.0005 38.4 2.5 48 191-242 186-233 (244)
415 3fl2_A E3 ubiquitin-protein li 37.2 5.9 0.0002 37.0 -0.6 46 51-99 52-97 (124)
416 4ddu_A Reverse gyrase; topoiso 36.8 77 0.0026 41.0 9.6 96 606-704 103-205 (1104)
417 1jm7_A BRCA1, breast cancer ty 36.6 7.8 0.00027 35.2 0.2 48 51-99 21-68 (112)
418 3l11_A E3 ubiquitin-protein li 36.4 15 0.00053 33.5 2.2 45 51-99 15-60 (115)
419 2fmm_A Chromobox protein homol 36.2 13 0.00046 31.3 1.6 29 130-163 30-58 (74)
420 2eqr_A N-COR1, N-COR, nuclear 36.1 19 0.00064 29.1 2.4 24 1080-1103 11-34 (61)
421 2cqr_A RSGI RUH-043, DNAJ homo 36.0 21 0.00071 30.1 2.7 21 1080-1100 17-37 (73)
422 2csy_A Zinc finger protein 183 35.7 4.9 0.00017 34.3 -1.3 44 51-99 15-59 (81)
423 3sjm_A Telomeric repeat-bindin 35.6 43 0.0015 27.3 4.5 39 969-1009 14-54 (64)
424 2r8r_A Sensor protein; KDPD, P 35.3 39 0.0013 35.1 5.3 44 306-349 8-52 (228)
425 2ecw_A Tripartite motif-contai 34.7 7 0.00024 33.3 -0.5 48 51-99 19-69 (85)
426 1u6t_A SH3 domain-binding glut 34.6 59 0.002 30.2 5.8 45 627-671 2-53 (121)
427 2l82_A Designed protein OR32; 34.6 1E+02 0.0035 27.4 7.0 49 626-674 4-52 (162)
428 1ls1_A Signal recognition part 34.4 1.2E+02 0.0042 32.5 9.5 33 307-340 101-133 (295)
429 2ea6_A Ring finger protein 4; 33.8 2.9 9.9E-05 34.3 -3.0 46 50-99 14-66 (69)
430 2dr3_A UPF0273 protein PH0284; 33.8 66 0.0023 32.9 7.0 51 301-352 20-70 (247)
431 3eqz_A Response regulator; str 33.8 1.8E+02 0.0061 25.8 9.4 75 649-723 47-127 (135)
432 1jm7_B BARD1, BRCA1-associated 33.8 23 0.00079 32.5 2.9 43 50-98 21-64 (117)
433 1tue_A Replication protein E1; 33.7 40 0.0014 34.6 4.9 25 305-329 59-83 (212)
434 2ecv_A Tripartite motif-contai 33.4 9.1 0.00031 32.6 0.1 49 51-100 19-70 (85)
435 2rdm_A Response regulator rece 33.3 2.4E+02 0.0081 24.9 10.1 97 622-724 27-126 (132)
436 2kn9_A Rubredoxin; metalloprot 33.0 25 0.00084 30.2 2.7 38 63-101 27-72 (81)
437 1dx8_A Rubredoxin; electron tr 32.9 30 0.001 28.8 3.1 42 63-105 7-56 (70)
438 1ofh_A ATP-dependent HSL prote 32.8 49 0.0017 35.4 5.9 26 303-328 49-74 (310)
439 2eyq_A TRCF, transcription-rep 32.6 85 0.0029 40.9 9.0 96 606-704 634-734 (1151)
440 2v3b_B Rubredoxin 2, rubredoxi 32.4 28 0.00097 27.5 2.8 36 64-100 4-47 (55)
441 3h5i_A Response regulator/sens 32.4 2.8E+02 0.0096 25.0 11.7 19 702-720 105-123 (140)
442 3a10_A Response regulator; pho 32.3 2E+02 0.0068 24.8 9.2 90 623-719 24-115 (116)
443 3u4q_B ATP-dependent helicase/ 31.7 50 0.0017 43.2 6.7 49 309-357 6-56 (1166)
444 2djb_A Polycomb group ring fin 31.6 9.2 0.00032 31.7 -0.2 45 51-99 15-60 (72)
445 2ct2_A Tripartite motif protei 31.4 7.4 0.00025 33.5 -0.9 48 51-99 15-66 (88)
446 3of5_A Dethiobiotin synthetase 31.1 34 0.0012 35.5 4.0 27 307-333 8-34 (228)
447 3ipz_A Monothiol glutaredoxin- 30.4 1.4E+02 0.0047 26.7 7.6 55 615-670 9-69 (109)
448 1t1h_A Gspef-atpub14, armadill 30.4 9 0.00031 32.2 -0.5 45 51-99 8-53 (78)
449 3qxc_A Dethiobiotin synthetase 30.2 42 0.0014 35.2 4.6 27 307-333 25-51 (242)
450 1v5n_A PDI-like hypothetical p 30.1 17 0.00059 31.8 1.3 31 52-82 48-80 (89)
451 3grc_A Sensor protein, kinase; 30.0 2.7E+02 0.0094 24.9 10.1 94 623-720 29-126 (140)
452 2ltp_A Nuclear receptor corepr 36.1 11 0.00038 33.1 0.0 23 1080-1102 15-37 (89)
453 2r2a_A Uncharacterized protein 29.7 25 0.00086 35.7 2.7 36 431-466 90-132 (199)
454 1s24_A Rubredoxin 2; electron 29.6 31 0.0011 30.0 2.8 37 63-100 35-79 (87)
455 3lte_A Response regulator; str 29.5 2E+02 0.0067 25.5 8.8 28 624-651 6-33 (132)
456 2w0m_A SSO2452; RECA, SSPF, un 29.2 71 0.0024 32.2 6.2 52 293-345 11-63 (235)
457 1xp8_A RECA protein, recombina 28.5 56 0.0019 36.5 5.5 55 293-348 61-117 (366)
458 2zet_C Melanophilin; complex, 28.2 18 0.00063 35.1 1.3 45 50-97 67-116 (153)
459 2ckl_A Polycomb group ring fin 28.0 15 0.0005 33.3 0.5 45 51-99 15-60 (108)
460 3hws_A ATP-dependent CLP prote 27.9 61 0.0021 35.9 5.8 36 303-342 50-85 (363)
461 3zyw_A Glutaredoxin-3; metal b 27.9 1.6E+02 0.0055 26.4 7.7 54 615-669 7-66 (111)
462 2y43_A E3 ubiquitin-protein li 27.5 14 0.00049 32.7 0.3 45 51-99 22-67 (99)
463 3fgn_A Dethiobiotin synthetase 27.4 42 0.0014 35.4 4.0 27 307-333 30-56 (251)
464 3te6_A Regulatory protein SIR3 27.3 63 0.0022 35.4 5.5 44 287-330 25-71 (318)
465 1h8a_C AMV V-MYB, MYB transfor 26.8 53 0.0018 30.6 4.2 40 968-1010 81-120 (128)
466 2fiy_A Protein FDHE homolog; F 26.6 29 0.00098 37.9 2.6 37 50-98 181-231 (309)
467 3gx8_A Monothiol glutaredoxin- 26.6 2.1E+02 0.0071 26.1 8.3 55 615-670 7-70 (121)
468 1wgx_A KIAA1903 protein; MYB D 26.5 42 0.0014 28.2 2.9 25 1077-1101 4-28 (73)
469 4fcw_A Chaperone protein CLPB; 26.5 40 0.0014 36.2 3.8 35 305-340 48-82 (311)
470 2ffh_A Protein (FFH); SRP54, s 26.4 1.9E+02 0.0065 32.9 9.6 33 307-340 101-133 (425)
471 4cpa_I Metallocarboxypeptidase 26.3 36 0.0012 23.8 2.0 14 86-99 18-31 (38)
472 1u0j_A DNA replication protein 26.2 42 0.0014 35.8 3.7 25 304-328 104-128 (267)
473 2lnd_A De novo designed protei 26.1 2.2E+02 0.0075 23.9 7.1 60 611-671 38-99 (112)
474 1yk4_A Rubredoxin, RD; electro 25.7 32 0.0011 26.8 2.0 35 64-99 3-45 (52)
475 1cr0_A DNA primase/helicase; R 25.5 1.4E+02 0.0047 31.7 7.9 46 297-342 28-73 (296)
476 3f6p_A Transcriptional regulat 25.3 3.3E+02 0.011 23.6 9.5 46 623-672 25-70 (120)
477 3p7j_A Heterochromatin protein 25.2 16 0.00055 31.8 0.2 29 130-163 40-68 (87)
478 3g5j_A Putative ATP/GTP bindin 25.1 70 0.0024 29.3 4.8 49 611-660 76-126 (134)
479 1lv7_A FTSH; alpha/beta domain 25.1 84 0.0029 32.6 6.0 25 304-328 45-69 (257)
480 3kjh_A CO dehydrogenase/acetyl 24.6 41 0.0014 34.6 3.3 29 310-339 6-34 (254)
481 3fe2_A Probable ATP-dependent 24.4 2.1E+02 0.0071 29.2 8.8 74 623-703 101-184 (242)
482 1g25_A CDK-activating kinase a 24.3 17 0.0006 29.2 0.2 46 51-99 3-53 (65)
483 1z6u_A NP95-like ring finger p 24.3 13 0.00046 35.9 -0.6 45 51-99 78-123 (150)
484 2b4a_A BH3024; flavodoxin-like 24.0 3.8E+02 0.013 23.8 9.9 91 623-720 38-130 (138)
485 2j48_A Two-component sensor ki 23.9 1.7E+02 0.0059 25.0 7.1 90 622-719 23-116 (119)
486 2cjj_A Radialis; plant develop 23.9 36 0.0012 30.1 2.2 20 1081-1100 8-27 (93)
487 1byi_A Dethiobiotin synthase; 23.4 66 0.0023 32.5 4.6 34 307-341 5-38 (224)
488 3cwq_A Para family chromosome 23.1 75 0.0026 32.1 4.9 41 308-350 5-47 (209)
489 2k1p_A Zinc finger RAN-binding 23.0 31 0.0011 24.1 1.3 12 87-98 4-15 (33)
490 2yan_A Glutaredoxin-3; oxidore 22.8 3E+02 0.01 23.9 8.4 56 616-672 9-70 (105)
491 1fex_A TRF2-interacting telome 22.7 39 0.0013 27.1 2.0 18 1082-1099 3-20 (59)
492 2lrq_A Protein MRG15, NUA4 com 28.4 18 0.00061 31.4 0.0 25 131-155 42-66 (85)
493 1wp9_A ATP-dependent RNA helic 22.6 2.1E+02 0.0071 32.1 9.2 108 606-720 33-152 (494)
494 2gkg_A Response regulator homo 22.2 3.1E+02 0.01 23.7 8.6 17 704-720 108-124 (127)
495 3cmu_A Protein RECA, recombina 22.1 1.3E+02 0.0045 41.2 8.0 44 301-345 1424-1467(2050)
496 2wem_A Glutaredoxin-related pr 22.0 2.4E+02 0.0081 25.7 7.6 52 617-669 13-71 (118)
497 3cmu_A Protein RECA, recombina 21.9 89 0.003 42.8 6.4 56 293-349 719-776 (2050)
498 1yuz_A Nigerythrin; rubrythrin 21.8 47 0.0016 33.8 2.9 28 62-100 170-197 (202)
499 2qxy_A Response regulator; reg 21.8 1.9E+02 0.0065 26.1 7.2 17 705-721 105-121 (142)
500 2cqq_A RSGI RUH-037, DNAJ homo 21.8 52 0.0018 27.5 2.7 21 1080-1100 7-27 (72)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-110 Score=1061.09 Aligned_cols=704 Identities=41% Similarity=0.713 Sum_probs=564.4
Q ss_pred CCccccccccccccCcCCCCCcccccc---cchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhhc
Q 001302 99 LNDIDKILDCEMRPTVAGDSDVSKLGS---KQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1104)
Q Consensus 99 ~~~iekil~wr~~p~~~~~~~~~~~~~---~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~ 175 (1104)
...|++||+.|++++............ ......||||||+|+||+||||+|+++|.+ .+++ +++.+|.++..
T Consensus 37 ~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~----~~~~-~~~~~~~k~~~ 111 (800)
T 3mwy_W 37 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQFI 111 (800)
T ss_dssp CCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCS----CBTT-HHHHHHHHHHT
T ss_pred CCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhh----cchH-HHHHHHHHHhh
Confidence 346899999987654332221111111 112346999999999999999999999963 3444 46888877542
Q ss_pred c--------CCCCchh----------hhccCCCccchhhhhhhcc-----CCccceeeeeeeeeccccccccccCCcc-c
Q 001302 176 S--------NNNAEED----------FVAIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-A 231 (1104)
Q Consensus 176 ~--------~~~~~e~----------~~~i~~~~~~verIi~~r~-----~~~~~~yLVKWkgL~Y~~~tWe~~~~~~-~ 231 (1104)
. ...+.++ .....++|+.|||||+++. ..++.+|||||++|||++||||...++. .
T Consensus 112 ~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~ 191 (800)
T 3mwy_W 112 IEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 191 (800)
T ss_dssp HHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTT
T ss_pred hHHHHHhcCCCCCHHHHHHHhhhhhhhccccccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhh
Confidence 1 1112222 1223478999999999986 4567899999999999999999887664 3
Q ss_pred cHHHHHHHHHhhhccccccccccCCCCcccccccCCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEc
Q 001302 232 FQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILAD 311 (1104)
Q Consensus 232 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILad 311 (1104)
.++.++.|..+........ .........+.|..+..+|.+..+++|||||++||+||...+..+.+|||||
T Consensus 192 ~~~~i~~~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILad 262 (800)
T 3mwy_W 192 APEQVKHFQNRENSKILPQ---------YSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILAD 262 (800)
T ss_dssp CHHHHHHHHHTTTCTTCST---------TCCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECC
T ss_pred hHHHHHHHHHhhhcccCCc---------chhcccccCCcccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 4677888876433211100 0011122344578888999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhc--CCCCceEEEeCcccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhh
Q 001302 312 EMGLGKTIQSIAFLASLFG--ERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVK 389 (1104)
Q Consensus 312 emGlGKTiqai~~l~~l~~--~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~ 389 (1104)
+||||||+|+|+++.+++. ...+|+|||||.+++.||.+||.+|+|++++++|+|....+..++.++++......
T Consensus 263 emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~--- 339 (800)
T 3mwy_W 263 EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAK--- 339 (800)
T ss_dssp CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC------
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhcccccc---
Confidence 9999999999999998864 34569999999999999999999999999999999999999999998876543211
Q ss_pred ccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCC
Q 001302 390 KKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1104)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1104)
.....+++|+||||+++..+...+..+.|++|||||||++||..+++++++..+.+.+||+|||||++|
T Consensus 340 -----------~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN 408 (800)
T 3mwy_W 340 -----------GKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQN 408 (800)
T ss_dssp -------------CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSS
T ss_pred -----------ccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCC
Confidence 112468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHH
Q 001302 470 NLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYK 549 (1104)
Q Consensus 470 ~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~ 549 (1104)
++.|||+|++||.|+.|.....|............+..|+.+++|+++||++.++...||++.+.++.|+||+.|+.+|+
T Consensus 409 ~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~ 488 (800)
T 3mwy_W 409 NIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK 488 (800)
T ss_dssp CSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHH
T ss_pred CHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHH
Confidence 99999999999999999887777654444455677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCchhHHHHHHHHHHHHhCCccccCCCCC--------CcccchHHHHHHHhhhhHHHHHHHHHHHH
Q 001302 550 AILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEP--------DIEDTNESFKQLLESSGKLQLLDKMMVKL 620 (1104)
Q Consensus 550 ~il~~~~~~l~~~-~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~--------~~~~~~~~~~~li~~S~Kl~~L~~lL~~l 620 (1104)
.++.++...+... .+...+++++++.||++|+||+++...+. ...........++.+|+|+.+|.++|..+
T Consensus 489 ~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~ 568 (800)
T 3mwy_W 489 NILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRL 568 (800)
T ss_dssp HHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHH
Confidence 9998876655432 33446789999999999999999865432 12233455678889999999999999999
Q ss_pred HHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE
Q 001302 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1104)
Q Consensus 621 ~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI 700 (1104)
.+.|+|||||||++.++++|+++|...|+++.+|+|+++..+|+++|++||++++..++||+||++||+||||++|++||
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred EECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc--------ccCCCHHHHHH
Q 001302 701 IYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--------AQNINQEELDD 772 (1104)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~--------~~~~~~~el~~ 772 (1104)
+||++|||+.++||+||+||+||+++|.||+|++++|+||+|++++.+|+.|+++|++.+. ...++.+++.+
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ 728 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSA 728 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHH
T ss_pred EecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996542 24678999999
Q ss_pred HHHhchhhhhcccccCCCCcccCCCCHHHHHHHhcCCCCCccccCCCC--cchhhhhhhhhhhccc
Q 001302 773 IIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--EDEDGFLKAFKVANFE 836 (1104)
Q Consensus 773 ~l~~ga~~l~~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 836 (1104)
||++|+..||...+.+. .+.+.+||.||+|++...+.++... ..+++|+++|++++|.
T Consensus 729 ll~~g~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (800)
T 3mwy_W 729 ILKFGAGNMFTATDNQK------KLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYK 788 (800)
T ss_dssp HHSSCSSSSCCSHHHHH------HHHTCCHHHHHHHCEECCCSCCCCCCEESCHHHHHTTC-----
T ss_pred HHHcchHhhhhccCccc------cccccCHHHHHHhhhhccccccccccccchHHHHhhceeeecc
Confidence 99999999998765321 2356799999999998776654322 3468899999988874
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-75 Score=718.97 Aligned_cols=476 Identities=33% Similarity=0.558 Sum_probs=400.6
Q ss_pred CCCcHHHHHHHHHHHHhh-----cCCCcEEEEcCCCchHHHHHHHHHHHHhcCC------CCceEEEeCcccHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~-----~~~~~~ILademGlGKTiqai~~l~~l~~~~------~~p~LIV~P~s~l~qW~~E~ 352 (1104)
..|||||.+|++||...+ ..+.+|||||+||+|||+|+|+++..+.... .+++|||||.+++.||.+||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 579999999999998765 4677899999999999999999999987643 24699999999999999999
Q ss_pred HHHcCC-CeEEEEecC-hhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcc
Q 001302 353 ATWAPQ-MNVVMYVGT-SQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1104)
Q Consensus 353 ~~~~p~-~~vv~~~g~-~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w 429 (1104)
.+|+|. +.++.++|. ...+. .+..+ . .. ......++|+||||+++..+...+....|
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-----------------~~~~~~~~vvi~ty~~l~~~~~~l~~~~~ 193 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNF--I-SQ-----------------QGMRIPTPILIISYETFRLHAEVLHKGKV 193 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHH--H-CC-----------------CSSCCSCCEEEEEHHHHHHHTTTTTTSCC
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHH--H-Hh-----------------cCCCCCCcEEEeeHHHHHhhHHHhhcCCc
Confidence 999975 666666554 33221 12111 0 00 00124678999999999999888999999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccc---------
Q 001302 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1104)
Q Consensus 430 ~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~--------- 500 (1104)
++||+||||++||..++.++++..+.+.+||+|||||+||++.|||+|++|+.|+.+++...|...|....
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred cEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred ------hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHH-hcCCchhHHHHHH
Q 001302 501 ------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT-RRGGAQISLINVV 573 (1104)
Q Consensus 501 ------~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~-~~~~~~~~l~~~~ 573 (1104)
....+..|+.++.|+++||++.++...||++.+.++.|+||+.|+++|+.++........ ..+......+..+
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l 353 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSI 353 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 234577899999999999999999999999999999999999999999998876432211 1122345677889
Q ss_pred HHHHHHhCCccccCCC----CCCcccch-------HHHHHHHhhhhHHHHHHHHHHHHHH-hCCeEEEEecchhHHHHHH
Q 001302 574 MELRKLCCHPYMLEGV----EPDIEDTN-------ESFKQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLE 641 (1104)
Q Consensus 574 ~~Lrk~~~hP~l~~~~----~~~~~~~~-------~~~~~li~~S~Kl~~L~~lL~~l~~-~g~kvLIFsq~~~~ldiL~ 641 (1104)
+.||++|+||+++... +....... .........|+|+.+|..++..+.. .++|+||||+++.++++|+
T Consensus 354 ~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~ 433 (644)
T 1z3i_X 354 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE 433 (644)
T ss_dssp HHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHH
Confidence 9999999999986310 00000000 0000112469999999999999875 5899999999999999999
Q ss_pred HHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhh
Q 001302 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1104)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRi 721 (1104)
.+|...|+++.+++|+++..+|++++++||++++..++||+||++||+||||+.|++||+||++|||..+.||+||+||+
T Consensus 434 ~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 434 KLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp HHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred HHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 99999999999999999999999999999998887788999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcccc--ccCCCHHHHHHHHHhchh
Q 001302 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNINQEELDDIIRYGSK 779 (1104)
Q Consensus 722 GQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~--~~~~~~~el~~~l~~ga~ 779 (1104)
||+++|.||+|++.+|+||+|++++..|..+...|++... ...++.++|.+|+.++..
T Consensus 514 Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~ 573 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEK 573 (644)
T ss_dssp TCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSS
T ss_pred CCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999997642 357899999998877643
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-68 Score=647.21 Aligned_cols=455 Identities=31% Similarity=0.587 Sum_probs=394.2
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHHHHHHc
Q 001302 278 PEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 278 P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
|..+. .+|+|||.+|++||...+..+.++||||+||+|||+++++++..+...+ .+|+|||||.+++.||.+||.+|+
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHC
Confidence 44443 6899999999999988888899999999999999999999999887654 459999999999999999999999
Q ss_pred CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcC
Q 001302 357 PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1104)
Q Consensus 357 p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDE 436 (1104)
|++++.+++|.... .....++|+||||+++..+.. +....|++|||||
T Consensus 110 ~~~~v~~~~g~~~~-------------------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDE 157 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------------------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDE 157 (500)
T ss_dssp TTSCEEECSSSTTS-------------------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEET
T ss_pred CCceEEEEecCchh-------------------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeC
Confidence 99999999887521 012468899999999987654 7778999999999
Q ss_pred cccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhcc---chHHHHHHHHHHhh
Q 001302 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~---~~~~~~~~L~~~L~ 513 (1104)
||+++|..++.++++..+.+.++|+|||||++|++.|||++++||+|+.+++...|...|... ........|+.++.
T Consensus 158 aH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~ 237 (500)
T 1z63_A 158 AQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237 (500)
T ss_dssp GGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT
T ss_pred ccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998887532 23456778999999
Q ss_pred HHHHHHhHhh--HhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHhCCccccCCC
Q 001302 514 PHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGV 589 (1104)
Q Consensus 514 ~~~lRR~k~d--v~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~--~~~~l~~~~~~Lrk~~~hP~l~~~~ 589 (1104)
|+++||++.+ +...||++.+..+.++|++.|+..|+.+.......+....+ ....++..++.||++|+||.++...
T Consensus 238 ~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 238 PFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp TTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred hHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 9999999976 67799999999999999999999999987765433322221 1234677889999999999988643
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC-CCcEEEEecCCChHHHHHHHH
Q 001302 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 590 ~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~R~~~i~ 668 (1104)
+. ....++|+..+.++|..+...|+|+||||+++.+++.|.++|... |+.+.+++|+++..+|+.+++
T Consensus 318 ~~-----------~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~ 386 (500)
T 1z63_A 318 EQ-----------SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIIS 386 (500)
T ss_dssp CC-----------CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHH
T ss_pred cc-----------hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHH
Confidence 21 235789999999999999999999999999999999999999885 999999999999999999999
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHH
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~ 748 (1104)
+|++++... ++|+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++++|+||+|++++..
T Consensus 387 ~F~~~~~~~-vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 387 KFQNNPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHCTTCC-CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HhcCCCCCC-EEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 999875443 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccc--ccCCCHHHHHHHHHhc
Q 001302 749 KMVLEHLVVGRLK--AQNINQEELDDIIRYG 777 (1104)
Q Consensus 749 K~~l~~~v~g~~~--~~~~~~~el~~~l~~g 777 (1104)
|..+...+++... ...++.+|+.+++.+.
T Consensus 466 K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 496 (500)
T 1z63_A 466 KRSLFKDIISSGDSWITELSTEELRKVIELS 496 (500)
T ss_dssp CSSSSSSGGGSTTGGGGSSCHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCcchhccCCHHHHHHHhccC
Confidence 9999999986542 3568888888887654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2e-48 Score=501.35 Aligned_cols=418 Identities=20% Similarity=0.265 Sum_probs=323.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCcccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+|+|||.++++|+... .+.++||||+||+|||+++++++..+...+ .+++|||||.+++.||..||.+|+ ++++.
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEE
Confidence 57999999999998653 467899999999999999999999887654 459999999999999999999998 78888
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc---ccccCCcceEEEEcCccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~---~~l~~~~w~~vIvDEaHr 439 (1104)
+++|.......... ......++|+|+||+++..+. ..+....|++|||||||+
T Consensus 229 v~~~~~~~~~~~~~------------------------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~ 284 (968)
T 3dmq_A 229 LFDDERYAEAQHDA------------------------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH 284 (968)
T ss_dssp ECCHHHHHHHHHTT------------------------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC
T ss_pred EEccchhhhhhhhc------------------------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh
Confidence 88776543321100 012246799999999998764 335667899999999999
Q ss_pred ccCcccH---HHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHH-----------
Q 001302 440 LKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE----------- 503 (1104)
Q Consensus 440 lkn~~s~---~~~~l~~l--~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~----------- 503 (1104)
++|..+. .++++..+ .+.++|+|||||++|++.|+|++++|++|+.|.+...|...+.......
T Consensus 285 ~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~ 364 (968)
T 3dmq_A 285 LVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNK 364 (968)
T ss_dssp CCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 9987654 47788877 5778999999999999999999999999999999999987754321100
Q ss_pred -----------------------------------HHHHHHHHh-----hHHHHHHhHhhHhhcCCCcEEEEEeccCCHH
Q 001302 504 -----------------------------------QISRLHRML-----APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1104)
Q Consensus 504 -----------------------------------~~~~L~~~L-----~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~ 543 (1104)
....+..++ ...++|+++..+ ..+|+.....+.+.+++.
T Consensus 365 ~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 365 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp CCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHH
T ss_pred CCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHH
Confidence 001111111 112333334444 478888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc-cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001302 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1104)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l-~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~ 622 (1104)
.+..|..... ......... .... +.+|.. +....... ...+..++|+..|.+++.. .
T Consensus 444 ~~~~~~~~~~-----~~~~~~~~~-------~~~~-~l~pe~~~~~l~~~~-------~~~~~~~~K~~~L~~ll~~--~ 501 (968)
T 3dmq_A 444 YQTAIKVSGI-----MGARKSAED-------RARD-MLYPERIYQEFEGDN-------ATWWNFDPRVEWLMGYLTS--H 501 (968)
T ss_dssp HHHHHHHHHH-----TTCCSSGGG-------GTHH-HHCSGGGTTTTTSSS-------CCTTTTSHHHHHHHHHHHH--T
T ss_pred HHHHHHHHhh-----hhhhhhhHH-------HHhh-hcChHHHHHHhhhhh-------hcccCccHHHHHHHHHHHh--C
Confidence 8888864211 111110000 0111 122322 11111110 1234568899999999987 5
Q ss_pred hCCeEEEEecchhHHHHHHHHHhh-CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
.+.|+||||++..+++.|...|.. .|+++..++|+++..+|..+++.|+++.+ .+.+|++|+++++|||++.|++||+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-cccEEEecchhhcCCCcccCcEEEE
Confidence 789999999999999999999995 59999999999999999999999997652 3458999999999999999999999
Q ss_pred ECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 001302 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1104)
Q Consensus 702 ~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l 752 (1104)
||++|||..+.|++||+||+||++.|.||++++.+|+|++|++...+|+.+
T Consensus 581 ~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 581 FDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp SSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred ecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999888754
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-43 Score=425.58 Aligned_cols=421 Identities=14% Similarity=0.184 Sum_probs=293.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc--CCCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~--p~~~ 360 (1104)
.+|+|||.+++.|+.. + ++||+++||+|||+++++++..+.....+++|||||. +++.||.++|.+|+ |...
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 4799999999998833 3 9999999999999999999887766445699999996 88899999999998 5569
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDEaH 438 (1104)
+.+++|.......... ...++|+|+||+.+..... .+....|++|||||||
T Consensus 83 v~~~~g~~~~~~~~~~---------------------------~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred eEEeeCCcchhhhhhh---------------------------ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 9999998655432111 1257899999999986533 4556689999999999
Q ss_pred cccCcccHHH--HHHHh-cccccEEEEecCCCCCCHHHHHHHHHhhcCCCCC---ChHHHHHHHh--------ccchHHH
Q 001302 439 RLKNKDSKLF--SSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG---SLEEFQEEFK--------DINQEEQ 504 (1104)
Q Consensus 439 rlkn~~s~~~--~~l~~-l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~---~~~~F~~~f~--------~~~~~~~ 504 (1104)
++++..+... ..+.. ....++|+|||||. ++..+++.++.++.+.... ....+...|. .......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (494)
T 1wp9_A 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEI 214 (494)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHH
T ss_pred ccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHH
Confidence 9997543222 22222 34678999999999 7788888888887654321 1111111110 1112345
Q ss_pred HHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh-----------------------
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR----------------------- 561 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~----------------------- 561 (1104)
...+...+.+++.++.+......+..... ..++..........+ ...+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQII---NEEMAKGNHDLRGLLLYHAMALKLHHAIE 287 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHH---HHHHTTTCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHH---HHHhhccccchhhHHHHHHHHHHHHHHHH
Confidence 66788888888888888766544332211 122222211111000 000100
Q ss_pred --cCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHHHHHH----------HhhhhHHHHHHHHHHHHH--HhCCeE
Q 001302 562 --RGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQL----------LESSGKLQLLDKMMVKLK--EQGHRV 627 (1104)
Q Consensus 562 --~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~l----------i~~S~Kl~~L~~lL~~l~--~~g~kv 627 (1104)
.......+...+..+...+.|+..... .. ......+..+ ...++|+..|.++|.... ..++|+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 364 (494)
T 1wp9_A 288 LLETQGLSALRAYIKKLYEEAKAGSTKAS--KE-IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKI 364 (494)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTCCHHH--HH-HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHhhcHHHHHHHHHHHHHhhccccchhh--hh-hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeE
Confidence 011122233444444444444210000 00 0000111111 156889999999999876 468999
Q ss_pred EEEecchhHHHHHHHHHhhCCCcEEEEec--------CCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE
Q 001302 628 LIYSQFQHMLDLLEDYLTFKKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1104)
Q Consensus 628 LIFsq~~~~ldiL~~~L~~~g~~~~ridG--------~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V 699 (1104)
|||+++..+++.|.++|...|+++.+++| +++..+|+.+++.|+++... +|++|.++|+||||+.|++|
T Consensus 365 lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~V 441 (494)
T 1wp9_A 365 IVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLV 441 (494)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEE
T ss_pred EEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEE
Confidence 99999999999999999999999999999 89999999999999976533 79999999999999999999
Q ss_pred EEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 001302 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1104)
Q Consensus 700 Ii~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~ 753 (1104)
|+||++|||..+.|++||+||.|| +.+|+|++++|+||+++.++.+|..+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred EEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998 899999999999999999998887653
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-42 Score=384.53 Aligned_cols=252 Identities=27% Similarity=0.442 Sum_probs=197.1
Q ss_pred HHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~--~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
-+||+|++|..+|||+.+.+++|+||+.|+++|+.++.+....+....+ ....+++.++.||++|+||+++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 4799999999999999999999999999999999999887665543222 12457888999999999999986321
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC-CCcEEEEecCCChHHHHHHHHHHcc
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.++..|+|+..|.++|..+.+.|+|+||||+++.++++|..+|... |+++.+++|+++..+|+.++++|++
T Consensus 90 --------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 90 --------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp --------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC
Confidence 1345799999999999999999999999999999999999999885 9999999999999999999999998
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l 752 (1104)
++... +||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+
T Consensus 162 ~~~~~-v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 162 NPSVK-FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CTTCC-EEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred CCCCC-EEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 75444 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccc--ccCCCHHHHHHHHHhchh
Q 001302 753 EHLVVGRLK--AQNINQEELDDIIRYGSK 779 (1104)
Q Consensus 753 ~~~v~g~~~--~~~~~~~el~~~l~~ga~ 779 (1104)
...+++... ...++.+||.+|+.++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 269 (271)
T 1z5z_A 241 FKDIISSGDSWITELSTEELRKVIELSVG 269 (271)
T ss_dssp HTTGGGGTTHHHHTSCHHHHHHHHSCCCT
T ss_pred HHHHHccCchhhhcCCHHHHHHHhccCCC
Confidence 999997643 357899999999877643
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.8e-40 Score=398.41 Aligned_cols=371 Identities=17% Similarity=0.240 Sum_probs=265.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCe-
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN- 360 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~- 360 (1104)
+.+|+|||.++++++ ..+.++||+++||+|||++++.++..+ ..++|||||. +++.||.++|.+| +..
T Consensus 91 ~~~l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~ 160 (472)
T 2fwr_A 91 EISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF--GEEY 160 (472)
T ss_dssp CCCBCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG--CGGG
T ss_pred CCCcCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhC--CCcc
Confidence 468999999999876 455679999999999999999888766 3599999998 8889999999995 566
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl 440 (1104)
+.+++|... ...+|+|+||+.+......+. -.|++|||||||++
T Consensus 161 v~~~~g~~~-----------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~ 204 (472)
T 2fwr_A 161 VGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHL 204 (472)
T ss_dssp EEEBSSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGT
T ss_pred eEEECCCcC-----------------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCC
Confidence 777776532 235799999999977655442 35899999999999
Q ss_pred cCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHHh
Q 001302 441 KNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRV 520 (1104)
Q Consensus 441 kn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR~ 520 (1104)
.+.... ..+..+...++|+|||||.+++..+ ..+...+.|.+.++.
T Consensus 205 ~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 205 PAESYV--QIAQMSIAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFELF 250 (472)
T ss_dssp TSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEECC
T ss_pred CChHHH--HHHHhcCCCeEEEEecCccCCCCHH--------------------------------HHHHHHhCCeEeecC
Confidence 987544 4566677889999999998654221 112233344444444
Q ss_pred HhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccC-CCCC----Ccc
Q 001302 521 KKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE-GVEP----DIE 594 (1104)
Q Consensus 521 k~dv~~-~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~-~~~~----~~~ 594 (1104)
..++.. .+++.....+.+.+++.++..|..+.......+............ + ..++.. ...+ ...
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED----F-----NKIVMASGYDERAYEALR 321 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS----S-----TTTTTTTCCSSSSSTTTH
T ss_pred HHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh----H-----HHHHHHhccCHHHHHHHH
Confidence 444433 477888888999999999999987655433322211100000000 0 000000 0000 000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
............+.|+..|.++|.. ..++++|||+++..+++.|.+.|. +..++|.++..+|+.+++.|+++.
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 1111222345578899999999987 568999999999999999999985 456899999999999999998754
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCC-CeEEEEEEeeCCCHHHHHHHHHHHHHHH
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMTKKKMVL 752 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~-k~V~Vyrlvt~~TvEe~i~~~~~~K~~l 752 (1104)
.. +|++|+++++|||++.+++||++|++|||..+.|++||++|.||. +.|.||.|++++|+|+++.++.++|..+
T Consensus 395 ~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 395 FR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred CC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 43 789999999999999999999999999999999999999999998 8999999999999999999988877654
No 8
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=3e-38 Score=347.88 Aligned_cols=212 Identities=23% Similarity=0.238 Sum_probs=170.0
Q ss_pred CCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh---cCC--c---hhHHHHHHHHHHHHhCCcccc-CCCCCCcccchH
Q 001302 528 LPPKKELILRVELSSKQKEYYKAILTRNYQILTR---RGG--A---QISLINVVMELRKLCCHPYML-EGVEPDIEDTNE 598 (1104)
Q Consensus 528 lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---~~~--~---~~~l~~~~~~Lrk~~~hP~l~-~~~~~~~~~~~~ 598 (1104)
.|++.|++++|+||+.|+++|+.++..+...+.+ +.+ . ..++.+++|+||+|||||||+ +...+......+
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 4999999999999999999999999887665542 111 1 246789999999999999999 555444333334
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCce
Q 001302 599 SFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1104)
Q Consensus 599 ~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~ 678 (1104)
....++..|||+.+|++||..+.+.|||||||||++.+||+|+++|..+|++|+|+||++.. .+++. .++..+
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~ 172 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCT 172 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCce
Confidence 45778999999999999999999999999999999999999999999999999999999544 33221 234566
Q ss_pred EEEeecCccccccc-----ccCCCEEEEECCCCChhhH-HHHHHhhHhh--CCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 679 CFLLSTRAGGLGIN-----LATADTVIIYDSDWNPHAD-LQAMARAHRL--GQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 679 v~Llstragg~GIN-----L~~ad~VIi~D~~wNp~~~-~Qa~gR~hRi--GQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
+||+ |++||.||| |++||+||+|||+|||+++ +||+.|+||+ ||+++|.|||||+.+|||+.++...+
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 6766 779999987 8999999999999999998 9999999999 78999999999999999999998755
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.1e-35 Score=356.48 Aligned_cols=430 Identities=15% Similarity=0.188 Sum_probs=225.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC----CCceEEEeCc-ccHHHHHHHHHHHcC-
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~qW~~E~~~~~p- 357 (1104)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+...+... .+++|||||. +++.||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57999999999887 3578899999999999999888776665442 4589999997 788999999999987
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--c-cCCcceEEE
Q 001302 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (1104)
Q Consensus 358 -~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l-~~~~w~~vI 433 (1104)
++++..++|.......... ....++|+|+|++.+...... + ..-.|++||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 135 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMI 135 (556)
T ss_dssp GTCCEEECCCC-----CHHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEE
T ss_pred cCceEEEEeCCCCcchhHHH--------------------------hhCCCCEEEECHHHHHHHHHhCcccccccCCEEE
Confidence 7889999887643321111 013578999999999764322 3 344689999
Q ss_pred EcCcccccCcccHHHHHHHh-c--------ccccEEEEecCCCCCCH-------HHHHHHHHhhcCCCCC----ChHHHH
Q 001302 434 VDEGHRLKNKDSKLFSSLKQ-Y--------STRHRVLLTGTPLQNNL-------DELFMLMHFLDAGKFG----SLEEFQ 493 (1104)
Q Consensus 434 vDEaHrlkn~~s~~~~~l~~-l--------~~~~rllLTgTPlqN~~-------~EL~~ll~fL~p~~~~----~~~~F~ 493 (1104)
|||||++.+..+. ...+.. + ....+|+|||||.+++. ..+..+...+++..+. ....+.
T Consensus 136 iDEah~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 214 (556)
T 4a2p_A 136 FDECHNTTGNHPY-NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 214 (556)
T ss_dssp EETGGGCSTTSHH-HHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred EECCcccCCcchH-HHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHH
Confidence 9999999887642 222222 1 12568999999988764 3334444555533221 223333
Q ss_pred HHHhccc-------------hHHHHHHHHHHhhHH--------------------------HHHHhHhhHhhcCCCcEEE
Q 001302 494 EEFKDIN-------------QEEQISRLHRMLAPH--------------------------LLRRVKKDVMKELPPKKEL 534 (1104)
Q Consensus 494 ~~f~~~~-------------~~~~~~~L~~~L~~~--------------------------~lRR~k~dv~~~lP~k~e~ 534 (1104)
..+.... ....+..+...+..+ +....+......+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 289 (556)
T 4a2p_A 215 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----- 289 (556)
T ss_dssp HHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC--------
T ss_pred hcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc-----
Confidence 2221100 001111111111111 11111111111111
Q ss_pred EEeccCCHHHHHHHHHHHHHHHH------HHH-hcCCchhHHHHHHHH-HHHHhCCccccCCCCCCcccchHHH------
Q 001302 535 ILRVELSSKQKEYYKAILTRNYQ------ILT-RRGGAQISLINVVME-LRKLCCHPYMLEGVEPDIEDTNESF------ 600 (1104)
Q Consensus 535 ~v~v~ls~~Q~~~Y~~il~~~~~------~l~-~~~~~~~~l~~~~~~-Lrk~~~hP~l~~~~~~~~~~~~~~~------ 600 (1104)
....+...|..+...... .+. ............+.. +.....+.+ ......+
T Consensus 290 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~ 355 (556)
T 4a2p_A 290 -----DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY---------TELEQHLTAKFQE 355 (556)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC---------CHHHHHHHHHHHT
T ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHhh
Confidence 112222222222111000 000 000000000011100 000101100 0000000
Q ss_pred -----HHH----HhhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhC------------CCcEEEEecC
Q 001302 601 -----KQL----LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGK 657 (1104)
Q Consensus 601 -----~~l----i~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~ridG~ 657 (1104)
... ...++|+..|.++|.... ..++|+||||+++.+++.|.++|... |..+..++|+
T Consensus 356 ~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~ 435 (556)
T 4a2p_A 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 435 (556)
T ss_dssp THHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------
T ss_pred HHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccc
Confidence 000 114889999999998776 56799999999999999999999765 5666677778
Q ss_pred CChHHHHHHHHHHcc-CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 658 VGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 658 ~~~~~R~~~i~~Fn~-~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
++..+|+.++++|++ +.. .+|++|+++|+|||++.+++||+||++|||..++|++|| |+.+++.+|.|++.+
T Consensus 436 ~~~~~R~~~~~~F~~~g~~---~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~ 508 (556)
T 4a2p_A 436 MTLPSQKGVLDAFKTSKDN---RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKT 508 (556)
T ss_dssp ------------------C---CEEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCH
T ss_pred cCHHHHHHHHHHhcccCce---EEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCc
Confidence 999999999999987 333 379999999999999999999999999999999999999 445788999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHH
Q 001302 737 SIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDI 773 (1104)
Q Consensus 737 TvEe~i~~~~~~K~~l~~~v~g~~~~~~~~~~el~~~ 773 (1104)
+++++ ......|..+...++..+ +.++.+++...
T Consensus 509 ~~~~~-~~~~~~k~~~~~~~i~~i--~~~~~~~~~~~ 542 (556)
T 4a2p_A 509 EVVEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAKK 542 (556)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHHH
T ss_pred chHHH-HHhhHHHHHHHHHHHHHh--hcCChHHHHHH
Confidence 99998 555666666656655543 34455555443
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4e-36 Score=386.59 Aligned_cols=418 Identities=14% Similarity=0.189 Sum_probs=228.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC----CCceEEEeCc-ccHHHHHHHHHHHcC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~qW~~E~~~~~p 357 (1104)
..+|+|||.+++.++ ..+.++||+++||+|||++++..+..++... .+++|||||. +++.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 468999999999988 4578999999999999999888777665543 4589999995 588999999999987
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--c-cCCcceEE
Q 001302 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCM 432 (1104)
Q Consensus 358 --~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l-~~~~w~~v 432 (1104)
++.+.+++|+...+..... ....++|+|+||+.+...... + ..-.|++|
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--------------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--------------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred ccCceEEEEECCcchhhHHHH--------------------------hccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 7899999998744321110 113578999999999764322 2 23368999
Q ss_pred EEcCcccccCcccHHHHHHHhcc---------cccEEEEecCCCCCCHHHHHHHHH-------hhcCCCCC----ChHHH
Q 001302 433 IVDEGHRLKNKDSKLFSSLKQYS---------TRHRVLLTGTPLQNNLDELFMLMH-------FLDAGKFG----SLEEF 492 (1104)
Q Consensus 433 IvDEaHrlkn~~s~~~~~l~~l~---------~~~rllLTgTPlqN~~~EL~~ll~-------fL~p~~~~----~~~~F 492 (1104)
||||||++.+..+ ....+..+. ...+++|||||.+++..++..+++ .|+...+. ....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (936)
T ss_dssp EEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHH
Confidence 9999999998765 222222221 256899999999877655443333 22221111 11111
Q ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh-----------
Q 001302 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR----------- 561 (1104)
Q Consensus 493 ~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~----------- 561 (1104)
...+. -|......+...+.+.....+..++......+..
T Consensus 455 ~~~~~------------------------------~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~ 504 (936)
T 4a2w_A 455 QRFMN------------------------------KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNS 504 (936)
T ss_dssp HHHSC------------------------------CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhcc------------------------------CCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 11111 1111111111113333222222222221111100
Q ss_pred ----------------------cC-Cch-------hHHHHHHHHHHHHhCCccccC-CC-----------------CCCc
Q 001302 562 ----------------------RG-GAQ-------ISLINVVMELRKLCCHPYMLE-GV-----------------EPDI 593 (1104)
Q Consensus 562 ----------------------~~-~~~-------~~l~~~~~~Lrk~~~hP~l~~-~~-----------------~~~~ 593 (1104)
.. ... ..+......+++. ++..... .. ....
T Consensus 505 ~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (936)
T 4a2w_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (936)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Confidence 00 000 0000111111111 0000000 00 0000
Q ss_pred ccchHHH--------HHHH-------hhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhC---------
Q 001302 594 EDTNESF--------KQLL-------ESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK--------- 647 (1104)
Q Consensus 594 ~~~~~~~--------~~li-------~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~--------- 647 (1104)
......+ ..+. ..++|+..|.++|.... ..++|+||||+++.+++.|.++|...
T Consensus 584 ~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~ 663 (936)
T 4a2w_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccccee
Confidence 0000000 0000 14889999999998764 45799999999999999999999876
Q ss_pred ---CCcEEEEecCCChHHHHHHHHHHcc-CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCC
Q 001302 648 ---KWQYERIDGKVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 723 (1104)
Q Consensus 648 ---g~~~~ridG~~~~~~R~~~i~~Fn~-~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ 723 (1104)
|..+..++|+++..+|+.++++|++ +.. .||++|+++|+|||++.|++||+||++|||..++||+|| |+
T Consensus 664 ~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~---~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR 736 (936)
T 4a2w_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN---RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GR 736 (936)
T ss_dssp EC----------------------------CC---SEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------
T ss_pred EEecCCCcccCCCCCHHHHHHHHHHhhccCCe---eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CC
Confidence 6666777888999999999999987 333 379999999999999999999999999999999999999 55
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHH
Q 001302 724 TNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 772 (1104)
Q Consensus 724 ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~~~~~~~~el~~ 772 (1104)
.+++.+|.|++.+|++++.+ ....|..+...++..+ +.++.+++..
T Consensus 737 ~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (936)
T 4a2w_A 737 AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEKI--QKWDEETFAK 782 (936)
T ss_dssp --CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHHh--hcCCHHHHHH
Confidence 57888999999999999866 4445555555554443 2344544443
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.5e-36 Score=378.99 Aligned_cols=418 Identities=14% Similarity=0.186 Sum_probs=226.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC----CCceEEEeCc-ccHHHHHHHHHHHcC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP 357 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~qW~~E~~~~~p 357 (1104)
..+|+|||.+++.++ ..+.++|++++||+|||++++..+..++... .+++|||||. +++.||.++|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 468999999999887 4578999999999999999888777665543 4599999995 688999999999987
Q ss_pred --CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cc-cCCcceEE
Q 001302 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCM 432 (1104)
Q Consensus 358 --~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l-~~~~w~~v 432 (1104)
++++..++|+......... ....++|+|+||+.+..... .+ ..-.|++|
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEK--------------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp GGTCCEEEECCC-----CHHH--------------------------HHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred cCCceEEEEeCCcchhhhHHH--------------------------hhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 7899999998754321111 11357899999999976432 22 33468999
Q ss_pred EEcCcccccCcccHHHHHHHhc---------ccccEEEEecCCCCCCHHHHHHHH-------HhhcCCCCC----ChHHH
Q 001302 433 IVDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNLDELFMLM-------HFLDAGKFG----SLEEF 492 (1104)
Q Consensus 433 IvDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~~~EL~~ll-------~fL~p~~~~----~~~~F 492 (1104)
||||||++.+..+ ....+..+ ....+++|||||.+++..++...+ ..+++..+. ....+
T Consensus 376 ViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l 454 (797)
T 4a2q_A 376 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 454 (797)
T ss_dssp EETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH
T ss_pred EEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHH
Confidence 9999999988654 22222222 125689999999887654433322 222222111 11111
Q ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHH------------
Q 001302 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT------------ 560 (1104)
Q Consensus 493 ~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~------------ 560 (1104)
...+. .|......+...+.+.-...+..++......+.
T Consensus 455 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~ 504 (797)
T 4a2q_A 455 QRFMN------------------------------KPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 504 (797)
T ss_dssp HHHSC------------------------------CCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhcC------------------------------CCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Confidence 11111 111111111111222222222211111110000
Q ss_pred ---------------------hcC-Cch-------hHHHHHHHHHHHHhCCcccc-CCCC-----------------CCc
Q 001302 561 ---------------------RRG-GAQ-------ISLINVVMELRKLCCHPYML-EGVE-----------------PDI 593 (1104)
Q Consensus 561 ---------------------~~~-~~~-------~~l~~~~~~Lrk~~~hP~l~-~~~~-----------------~~~ 593 (1104)
... ... ..+......|++.. +.... +... ...
T Consensus 505 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (797)
T 4a2q_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN-DALIISEDARIIDALSYLTEFFTNVKNGPY 583 (797)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHhccCc
Confidence 000 000 00111111121110 00000 0000 000
Q ss_pred ccchHHHH-----------HH----HhhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhh----------
Q 001302 594 EDTNESFK-----------QL----LESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTF---------- 646 (1104)
Q Consensus 594 ~~~~~~~~-----------~l----i~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~---------- 646 (1104)
......+. .+ ...++|+..|.++|.... ..++|+||||+++.+++.|.++|..
T Consensus 584 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~ 663 (797)
T 4a2q_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (797)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccce
Confidence 00000000 00 014889999999998754 5679999999999999999999976
Q ss_pred --CCCcEEEEecCCChHHHHHHHHHHcc-CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCC
Q 001302 647 --KKWQYERIDGKVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 723 (1104)
Q Consensus 647 --~g~~~~ridG~~~~~~R~~~i~~Fn~-~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ 723 (1104)
.|..+..++|+++..+|+.++++|++ +... ||++|+++|+|||++.|++||+||++|||..++|++|| +|
T Consensus 664 ~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR--- 736 (797)
T 4a2q_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR--- 736 (797)
T ss_dssp EC----------------------------CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC---------
T ss_pred EEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---
Confidence 36677788899999999999999987 3333 79999999999999999999999999999999999999 44
Q ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHH
Q 001302 724 TNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDD 772 (1104)
Q Consensus 724 ~k~V~Vyrlvt~~TvEe~i~~~~~~K~~l~~~v~g~~~~~~~~~~el~~ 772 (1104)
.+++.+|.|++.++++++ ......|..+...++..+ +.++.+++..
T Consensus 737 ~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l--~~~~~~~~~~ 782 (797)
T 4a2q_A 737 AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI--QKWDEETFAK 782 (797)
T ss_dssp --CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHHH--hcCCHHHHHH
Confidence 588899999999999998 555666666656555443 2345555443
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.8e-35 Score=358.53 Aligned_cols=442 Identities=15% Similarity=0.169 Sum_probs=239.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC----CCceEEEeCc-ccHHHHHHHHHHHcC-
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~qW~~E~~~~~p- 357 (1104)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||||. +++.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 57999999999988 3678999999999999999888776665442 4589999997 888999999999986
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--c-cCCcceEEE
Q 001302 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--L-KPIKWQCMI 433 (1104)
Q Consensus 358 -~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l-~~~~w~~vI 433 (1104)
++++..++|+......... .....+|+|+||+.+...... + ..-.|++||
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vV 132 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQH--------------------------IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMI 132 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHH--------------------------HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEE
T ss_pred CCcEEEEEcCCCcchhhHHH--------------------------HhcCCCEEEECHHHHHHHHhcCcccccccCCEEE
Confidence 6889999988643321111 012578999999999764332 3 334689999
Q ss_pred EcCcccccCcccHHHHHHHhc---------ccccEEEEecCCCCCCH-------HHHHHHHHhhcCCCCC----ChHHHH
Q 001302 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNNL-------DELFMLMHFLDAGKFG----SLEEFQ 493 (1104)
Q Consensus 434 vDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~~-------~EL~~ll~fL~p~~~~----~~~~F~ 493 (1104)
|||||++.+..+........+ ....+++|||||.+++. ..+..+...++...+. ....+.
T Consensus 133 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 212 (555)
T 3tbk_A 133 FDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE 212 (555)
T ss_dssp ETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH
T ss_pred EECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH
Confidence 999999988764222221222 12468999999999873 3344444555433221 111221
Q ss_pred HHHhcc----------chHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHH--------------------
Q 001302 494 EEFKDI----------NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSK-------------------- 543 (1104)
Q Consensus 494 ~~f~~~----------~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~-------------------- 543 (1104)
..+... ........+..++.. ++....++...++..... ....+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 289 (555)
T 3tbk_A 213 QVVYKPQKISRKVASRTSNTFKCIISQLMKE--TEKLAKDVSEELGKLFQI-QNREFGTQKYEQWIVGVHKACSVFQMAD 289 (555)
T ss_dssp TTCCCCCEEEEECCCCSCCHHHHHHHHHHHH--HHHHHHTSCHHHHGGGGC-CSCCSSSHHHHHHHHHHHHHHHTCCCSS
T ss_pred hhcCCCceEEEEecCcccChHHHHHHHHHHH--HHHHHHHHHHhhhhhhhc-ccccccchhhhHHHHHHHHHhhhhhccc
Confidence 111000 000001111111100 111111111111000000 00011110
Q ss_pred ---HHHHHHHHHHHHHH------HHH-hcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc-------chHHHH----H
Q 001302 544 ---QKEYYKAILTRNYQ------ILT-RRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED-------TNESFK----Q 602 (1104)
Q Consensus 544 ---Q~~~Y~~il~~~~~------~l~-~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~-------~~~~~~----~ 602 (1104)
+...|..+...... .+. ............+...-.-+.+.. ....... ...... .
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (555)
T 3tbk_A 290 KEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAA----FDETERELTRRFEEKLEELEKVSRD 365 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC---------HHHHHHHHHHTTHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcc----cchHHHHHHHHHhhhhhhhhhhccC
Confidence 00111111000000 000 000000000000000000000000 0000000 000000 0
Q ss_pred HHhhhhHHHHHHHHHHHHHHh--CCeEEEEecchhHHHHHHHHHhhC------------CCcEEEEecCCChHHHHHHHH
Q 001302 603 LLESSGKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLTFK------------KWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 603 li~~S~Kl~~L~~lL~~l~~~--g~kvLIFsq~~~~ldiL~~~L~~~------------g~~~~ridG~~~~~~R~~~i~ 668 (1104)
....++|+..|.++|..+... ++|+||||++..+++.|.++|... |..+..++|+++..+|+.+++
T Consensus 366 ~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 366 PSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 112478999999999987654 489999999999999999999876 445666677999999999999
Q ss_pred HHcc-CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 669 RFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 669 ~Fn~-~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
+|++ +... +|++|+++|+|||++.+++||+||++|||..++|++|| |+.+.+.+|.|++.++.++.. ....
T Consensus 446 ~F~~~g~~~---vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~-~~~~ 517 (555)
T 3tbk_A 446 AFRASGDNN---ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE-KANM 517 (555)
T ss_dssp ------CCS---EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH-HHHH
T ss_pred HHhcCCCee---EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH-HHhh
Confidence 9987 4333 79999999999999999999999999999999999999 667899999999999998873 3333
Q ss_pred HHHHHHHHHhccccccCCCHHHHHH
Q 001302 748 KKMVLEHLVVGRLKAQNINQEELDD 772 (1104)
Q Consensus 748 ~K~~l~~~v~g~~~~~~~~~~el~~ 772 (1104)
.|..+....+..+ +.++.+++..
T Consensus 518 ~~e~~~~~~~~~~--~~~~~~~~~~ 540 (555)
T 3tbk_A 518 IKEKIMNESILRL--QTWDEMKFGK 540 (555)
T ss_dssp HHHHHHHHHHHHH--HHSCHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCChHHHHH
Confidence 3444444444333 2234444443
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-32 Score=333.94 Aligned_cols=347 Identities=12% Similarity=0.129 Sum_probs=254.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHH--cCCCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATW--APQMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~--~p~~~ 360 (1104)
.+|+|||.++++++.. +.+++|+++||+|||++++.++..+...+.+++|||||. ++..||.++|.+| .|...
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 3899999999998753 478999999999999999887777665555699999996 6779999999999 55667
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl 440 (1104)
+..++|....... .....+|+|+||+.+...... ..-.|++|||||||++
T Consensus 188 v~~~~~~~~~~~~-----------------------------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 188 IKKIGGGASKDDK-----------------------------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLA 237 (510)
T ss_dssp EEECGGGCCTTGG-----------------------------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGC
T ss_pred eEEEecCCccccc-----------------------------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCC
Confidence 7777665322110 124678999999998765332 2236899999999999
Q ss_pred cCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHHHH
Q 001302 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRR 519 (1104)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~lRR 519 (1104)
.+. .....+..+ ...++|+||||| .++..+++++..++.+..+.... ...+.
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------------- 290 (510)
T 2oca_A 238 TGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTT-----------SKLME------------- 290 (510)
T ss_dssp CHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCCC-----------C-----------------
T ss_pred Ccc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeCH-----------HHHhh-------------
Confidence 873 344445666 466899999999 56656677777777664432110 00000
Q ss_pred hHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccchHH
Q 001302 520 VKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNES 599 (1104)
Q Consensus 520 ~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~~~ 599 (1104)
...+++.....+.+.+++...... .+.. + ...
T Consensus 291 -----~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~---~---------------------------~~~ 322 (510)
T 2oca_A 291 -----DGQVTELKINSIFLRYPDEFTTKL-------------KGKT---Y---------------------------QEE 322 (510)
T ss_dssp ----------CCEEEEEEEECCHHHHHHH-------------TTCC---H---------------------------HHH
T ss_pred -----CCcCCCceEEEEeecCChHHhccc-------------cccc---h---------------------------HHH
Confidence 014677777788888876543100 0000 0 001
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh-CCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCce
Q 001302 600 FKQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1104)
Q Consensus 600 ~~~li~~S~Kl~~L~~lL~~l~~~-g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~ 678 (1104)
+..++....|...+.+++...... +.++|||+. +..++.|.+.|...+.++..++|+++..+|+.+++.|+++...
T Consensus 323 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~-- 399 (510)
T 2oca_A 323 IKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI-- 399 (510)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC--
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC--
Confidence 122333445666677777666554 566777777 8888889999999988999999999999999999999865544
Q ss_pred EEEeec-CcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC-eEEEEEEeeCCCHHHHHH
Q 001302 679 CFLLST-RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEERMM 743 (1104)
Q Consensus 679 v~Llst-ragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k-~V~Vyrlvt~~TvEe~i~ 743 (1104)
+|++| .++++|||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.++
T Consensus 400 -vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 400 -IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp -EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred -EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 78888 99999999999999999999999999999999999999987 899999998776555443
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=343.64 Aligned_cols=425 Identities=15% Similarity=0.196 Sum_probs=241.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-----CCCceEEEeCc-ccHHHH-HHHHHHHc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRNW-EREFATWA 356 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-----~~~p~LIV~P~-s~l~qW-~~E~~~~~ 356 (1104)
.+|+|||.+++.++. .+.++||+++||+|||++++..+..++.. ..+++|||+|. +++.|| .++|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 579999999999884 47889999999999999998887765432 22699999996 577999 99999999
Q ss_pred CC-CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--------ccccCC
Q 001302 357 PQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPI 427 (1104)
Q Consensus 357 p~-~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--------~~l~~~ 427 (1104)
+. +++..++|+......... .....+|+|+|++.+.... ..+...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~ 135 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPE--------------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQLS 135 (699)
T ss_dssp TTTSCEEEEC----CCCCHHH--------------------------HHHSCSEEEEEHHHHHHHTC--------CCCGG
T ss_pred CcCceEEEEeCCcchhhHHHh--------------------------hhcCCCEEEECHHHHHHHHhccccccccceecc
Confidence 77 899999987643211111 0135789999999998643 234445
Q ss_pred cceEEEEcCcccccCccc---HHHHHHHh-c-------------ccccEEEEecCCCCCC-------HHHHHHHHHhhcC
Q 001302 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQ-Y-------------STRHRVLLTGTPLQNN-------LDELFMLMHFLDA 483 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~s---~~~~~l~~-l-------------~~~~rllLTgTPlqN~-------~~EL~~ll~fL~p 483 (1104)
.|++|||||||++.+... .....+.. + ....+|+|||||..++ ..++..++..+++
T Consensus 136 ~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 136 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp GCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred cCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 789999999999855332 11111211 1 3356899999999863 3455566666766
Q ss_pred CCCCCh----HHHHHHHhccc------hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHH
Q 001302 484 GKFGSL----EEFQEEFKDIN------QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1104)
Q Consensus 484 ~~~~~~----~~F~~~f~~~~------~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~ 553 (1104)
..+... ..+...+.... .......+...+...+ ......+ .+.|. -.+.. ..|...+.
T Consensus 216 ~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~-~~i~~~~--~~~~~------~~~g~---~~~~~~~~ 283 (699)
T 4gl2_A 216 FTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIM-TRIQTYC--QMSPM------SDFGT---QPYEQWAI 283 (699)
T ss_dssp SCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHH-HHHHHHH--TCCCC------SCSSS---HHHHHHHH
T ss_pred CEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHH-HHHHHHh--ccCcc------hhccc---hHHHHHHH
Confidence 332221 22222111100 0000011111111111 0111110 11110 01111 11222111
Q ss_pred HHHHH-HHhcCCchhHHH-------------------HHHHHHHHHhCCccc-----cCCC---CCCcccchHHHHHHHh
Q 001302 554 RNYQI-LTRRGGAQISLI-------------------NVVMELRKLCCHPYM-----LEGV---EPDIEDTNESFKQLLE 605 (1104)
Q Consensus 554 ~~~~~-l~~~~~~~~~l~-------------------~~~~~Lrk~~~hP~l-----~~~~---~~~~~~~~~~~~~li~ 605 (1104)
..... ............ ..+..++........ .... ..........+..+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (699)
T 4gl2_A 284 QMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFF 363 (699)
T ss_dssp HHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHH
Confidence 10000 000000000000 000001100000000 0000 0000011111111110
Q ss_pred ---------------hhhHHHHHHHHHHHHHHh---CCeEEEEecchhHHHHHHHHHhhC------CCcEEEEecC----
Q 001302 606 ---------------SSGKLQLLDKMMVKLKEQ---GHRVLIYSQFQHMLDLLEDYLTFK------KWQYERIDGK---- 657 (1104)
Q Consensus 606 ---------------~S~Kl~~L~~lL~~l~~~---g~kvLIFsq~~~~ldiL~~~L~~~------g~~~~ridG~---- 657 (1104)
.+.|+..|.++|...... +.++|||+++..+++.|.++|... |+++..++|.
T Consensus 364 ~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~ 443 (699)
T 4gl2_A 364 ENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSS 443 (699)
T ss_dssp HHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCT
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCcc
Confidence 346777777777765443 789999999999999999999987 9999999999
Q ss_pred ----CChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEe
Q 001302 658 ----VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1104)
Q Consensus 658 ----~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1104)
++..+|+.+++.|+++... +|++|.++|+|||++.+++||+||++|||..+.|++|||+|-| ..++.+.
T Consensus 444 ~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 444 EFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp TCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999875433 7999999999999999999999999999999999999986554 4444555
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHh
Q 001302 734 TRGSIEERMMQMTKKKMVLEHLVV 757 (1104)
Q Consensus 734 t~~TvEe~i~~~~~~K~~l~~~v~ 757 (1104)
..++.+.........+..+....+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 517 HSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHHHHH
Confidence 666654443333333333333333
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.2e-32 Score=342.42 Aligned_cols=392 Identities=16% Similarity=0.184 Sum_probs=217.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC----CCceEEEeCc-ccHHHHHHHHHHHcC-
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER----ISPHLVVAPL-STLRNWEREFATWAP- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~----~~p~LIV~P~-s~l~qW~~E~~~~~p- 357 (1104)
.+|+|||.+++.++ ..+.++|++++||+|||++++..+....... .+++|||+|. +++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~----l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPA----MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 57999999999998 3578999999999999999988777654322 2689999996 888999999999987
Q ss_pred -CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cc-cCCcceEEE
Q 001302 358 -QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SL-KPIKWQCMI 433 (1104)
Q Consensus 358 -~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l-~~~~w~~vI 433 (1104)
++++..++|+...+..... .....+|+|+||+.+..... .+ ....|++||
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQ--------------------------IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHH--------------------------HHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CCceEEEEeCCccccccHHH--------------------------hccCCCEEEECHHHHHHHHhcCcccccccccEEE
Confidence 6888889887543211110 01257899999999976533 23 344689999
Q ss_pred EcCcccccCcccHHHHHHHhc---------ccccEEEEecCCCCCC-------HHHHHHHHHhhcCCCCCC---hHHHHH
Q 001302 434 VDEGHRLKNKDSKLFSSLKQY---------STRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFGS---LEEFQE 494 (1104)
Q Consensus 434 vDEaHrlkn~~s~~~~~l~~l---------~~~~rllLTgTPlqN~-------~~EL~~ll~fL~p~~~~~---~~~F~~ 494 (1104)
|||||++++..+........+ ...++|+|||||..++ +..++.++..++...+.. ...+..
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~ 221 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELE 221 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHH
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHH
Confidence 999999987764332221111 2467899999998544 455556665554433211 111112
Q ss_pred HHhccc-----------h---HHHH----HHHHHHhh-----------------------HHHHHHhHhhHhhcCCCcEE
Q 001302 495 EFKDIN-----------Q---EEQI----SRLHRMLA-----------------------PHLLRRVKKDVMKELPPKKE 533 (1104)
Q Consensus 495 ~f~~~~-----------~---~~~~----~~L~~~L~-----------------------~~~lRR~k~dv~~~lP~k~e 533 (1104)
.|.... . ...+ ..+..+.. +++.++.+......+|.+.
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (696)
T 2ykg_A 222 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD- 300 (696)
T ss_dssp HHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------C-
T ss_pred hhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccch-
Confidence 221100 0 0000 01111110 1111111111111111110
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCC------------------CCCccc
Q 001302 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV------------------EPDIED 595 (1104)
Q Consensus 534 ~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~------------------~~~~~~ 595 (1104)
.+..++..+ ......|++.. +|..+... ......
T Consensus 301 ---------~~~~~~~~l------------------~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (696)
T 2ykg_A 301 ---------EESRICKAL------------------FLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDE 352 (696)
T ss_dssp ---------CHHHHHHHH------------------HHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred ---------hhhHHHHHH------------------HHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccch
Confidence 001111111 11111111110 11110000 000000
Q ss_pred chHHH-----------HHHH----hhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhCC----CcEEEE
Q 001302 596 TNESF-----------KQLL----ESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKK----WQYERI 654 (1104)
Q Consensus 596 ~~~~~-----------~~li----~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~g----~~~~ri 654 (1104)
....+ ..+. ..+.|+..|.++|.... ..+.++|||+++..+++.|.++|...| +++..+
T Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l 432 (696)
T 2ykg_A 353 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 432 (696)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEE
Confidence 00000 0000 25789999999998764 357899999999999999999999988 899999
Q ss_pred ec--------CCChHHHHHHHHHHcc-CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCC
Q 001302 655 DG--------KVGGAERQIRIDRFNA-KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1104)
Q Consensus 655 dG--------~~~~~~R~~~i~~Fn~-~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k 725 (1104)
+| +++..+|+.++++|++ +... +|++|.++++|||++.+++||+||++||+..++|++|| +|. +
T Consensus 433 ~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~ 505 (696)
T 2ykg_A 433 TGRGKTNQNTGMTLPAQKCILDAFKASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---R 505 (696)
T ss_dssp ----------------------------CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------C
T ss_pred EccCCCccccCCCHHHHHHHHHHHHhcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---C
Confidence 55 9999999999999986 4433 69999999999999999999999999999999999999 884 6
Q ss_pred eEEEEEEeeCCCHHHH
Q 001302 726 KVMIFRLITRGSIEER 741 (1104)
Q Consensus 726 ~V~Vyrlvt~~TvEe~ 741 (1104)
+..+|.|++.+++++.
T Consensus 506 ~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 506 GSKCFLLTSNAGVIEK 521 (696)
T ss_dssp CCEEEEEESCHHHHHH
T ss_pred CceEEEEecCCCHHHH
Confidence 6788999999887664
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=1.2e-31 Score=330.55 Aligned_cols=351 Identities=16% Similarity=0.172 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CcEEEEcCCCchHHHHHHHHHHHHhcCC--------CCceEEEeC-cccHHHHH-HH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAP-LSTLRNWE-RE 351 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~-~~~ILademGlGKTiqai~~l~~l~~~~--------~~p~LIV~P-~s~l~qW~-~E 351 (1104)
+..|+|||.++++++...+..+ .+++|+++||+|||++++.++..+...+ ..++||||| .++..||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4589999999999998776665 5589999999999999999998887643 359999999 67779999 88
Q ss_pred HHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc------cccc
Q 001302 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASLK 425 (1104)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~------~~l~ 425 (1104)
|..|.+. +..+.+.. .....+|+|+||+.+.... ..+.
T Consensus 256 ~~~~~~~--~~~~~~~~----------------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 256 FTPFGDA--RHKIEGGK----------------------------------VVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp CTTTCSS--EEECCC------------------------------------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred HHhcchh--hhhhhccC----------------------------------CCCCCcEEEEEhhhhccccccccccccCC
Confidence 8877642 22221110 1235789999999987642 2344
Q ss_pred CCcceEEEEcCcccccCcc-cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHH
Q 001302 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1104)
Q Consensus 426 ~~~w~~vIvDEaHrlkn~~-s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~ 504 (1104)
...|++|||||||++.+.. +.....+..+...++|+|||||..+...+++.++. +..+. ..-..
T Consensus 300 ~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~-----------~~~~~- 364 (590)
T 3h1t_A 300 QDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT-----------YSLRQ- 364 (590)
T ss_dssp TTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE-----------ECHHH-
T ss_pred CCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe-----------cCHHH-
Confidence 4568999999999998753 44455566677788999999999888776655532 11110 00000
Q ss_pred HHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcc
Q 001302 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1104)
Q Consensus 505 ~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~ 584 (1104)
.+ . ...++|.....+...............+......+..
T Consensus 365 ------~i---------~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 404 (590)
T 3h1t_A 365 ------GI---------D--DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD----------------------- 404 (590)
T ss_dssp ------HH---------H--HTSSCCEEEEEEEETTCC------------------------------------------
T ss_pred ------Hh---------h--CCccCCcEEEEeeeeeecccccccccccccccccccc-----------------------
Confidence 00 0 0234555555555544322211111111000000000
Q ss_pred ccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH---HhCCeEEEEecchhHHHHHHHHHhhCCCc--------EEE
Q 001302 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ--------YER 653 (1104)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~---~~g~kvLIFsq~~~~ldiL~~~L~~~g~~--------~~r 653 (1104)
. ......+...+....+...+.+.|..+. ..+.|+||||+....++.|.+.|...+.. +..
T Consensus 405 -------~-~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 405 -------G-EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred -------c-cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0 0000011222223334444433333322 34579999999999999999999765443 778
Q ss_pred EecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCC---CCeEEEE
Q 001302 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ---TNKVMIF 730 (1104)
Q Consensus 654 idG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ---~k~V~Vy 730 (1104)
++|.++ ++|+.++++|++++....++|++|.++++|||++.+++||+++++||+..+.|++||++|.|+ +..+.||
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 999875 479999999998776666689999999999999999999999999999999999999999995 6778899
Q ss_pred EEe
Q 001302 731 RLI 733 (1104)
Q Consensus 731 rlv 733 (1104)
.++
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 888
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=2e-29 Score=293.99 Aligned_cols=326 Identities=15% Similarity=0.180 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-C-CCceEEEeCc-ccHHHHHHHHHHHc---CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~-~~p~LIV~P~-s~l~qW~~E~~~~~---p~ 358 (1104)
.|+|||.+++.++ ..+.++|++++||+|||++++..+...... . ..++|||||. .+..||.+++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 5999999999887 457889999999999999987666655443 2 3489999996 77789999999986 57
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
+++..++|........... .....+|+|+|++.+..... .+....+++||+||
T Consensus 106 ~~~~~~~g~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp CCEEEECTTSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred eEEEEEeCCCCHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 8899998876543322211 11346899999999875322 23345788999999
Q ss_pred cccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHh
Q 001302 437 GHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1104)
Q Consensus 437 aHrlkn~~s---~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L 512 (1104)
||++.+... .+...+.... ....+++||||-.. ..++.
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~------------------------------------- 202 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPVC------------------------------------- 202 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHHHH-------------------------------------
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHHH-------------------------------------
Confidence 999976422 1222222232 44679999998422 11100
Q ss_pred hHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 513 ~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
..+ +..... +.+.-. .... +.. ..+.+.
T Consensus 203 ~~~------------~~~~~~--~~~~~~---------------------~~~~---------~~~-~~~~~~------- 230 (391)
T 1xti_A 203 RKF------------MQDPME--IFVDDE---------------------TKLT---------LHG-LQQYYV------- 230 (391)
T ss_dssp HHH------------CSSCEE--EECCCC---------------------CCCC---------CTT-CEEEEE-------
T ss_pred HHH------------cCCCeE--EEecCc---------------------cccC---------ccc-ceEEEE-------
Confidence 000 000000 000000 0000 000 000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.+....|...|.+++... .+.++|||++....++.+.++|...|+.+..++|+++..+|..+++.|++
T Consensus 231 ----------~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 231 ----------KLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp ----------ECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ----------EcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 001234555666666553 67899999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
+... +|++|.++++|||++.+++||+||++||+..++|++||++|.|+...+.+ |++.. -+..++....
T Consensus 299 ~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 299 FQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQ 367 (391)
T ss_dssp TCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHH
T ss_pred CCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHH
Confidence 5543 89999999999999999999999999999999999999999998766544 44432 2344444443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.7e-29 Score=288.70 Aligned_cols=309 Identities=16% Similarity=0.232 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeCc-ccHHHHHHHHHHHcC--CCe
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~ 360 (1104)
+|+|||.+++.++. ..+.++|+..+||+|||++++..+..+.... ..++|||||. ++..||.+++.++++ .+.
T Consensus 28 ~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 28 KPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp SCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 69999999998773 2347899999999999999887776665543 3489999996 667999999999975 466
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDEaH 438 (1104)
+..++|.......... ....+|+|+|++.+..... .+..-.|++||+||||
T Consensus 105 v~~~~~~~~~~~~~~~---------------------------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKA---------------------------LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EEEECTTSCHHHHHHH---------------------------HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEEECCcchHHHHhh---------------------------cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 7777776554332221 1256899999999875432 2333468899999999
Q ss_pred cccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHH
Q 001302 439 RLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1104)
Q Consensus 439 rlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~ 515 (1104)
++.+.. ..+...+..+. ....+++||||..+ +..++ ..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~----------------------------------~~~ 199 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPRE----ILNLA----------------------------------KKY 199 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHH----HHHHH----------------------------------HHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHH----HHHHH----------------------------------HHH
Confidence 987654 22333344443 45679999999311 11000 000
Q ss_pred HHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
+.. ...+...... . ..+.+..
T Consensus 200 ------------~~~--~~~~~~~~~~--------------------~----------------~~~~~~~--------- 220 (367)
T 1hv8_A 200 ------------MGD--YSFIKAKINA--------------------N----------------IEQSYVE--------- 220 (367)
T ss_dssp ------------CCS--EEEEECCSSS--------------------S----------------SEEEEEE---------
T ss_pred ------------cCC--CeEEEecCCC--------------------C----------------ceEEEEE---------
Confidence 000 0001000000 0 0000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCC
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~ 675 (1104)
+....|+..+.+++. ..+.++|||++....++.+.+.|...|+.+..++|+++..+|+.+++.|+++..
T Consensus 221 --------~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 221 --------VNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp --------CCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred --------eChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 012235555555544 578899999999999999999999999999999999999999999999986543
Q ss_pred CceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 676 ~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
. +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...+. .+++..
T Consensus 290 ~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 345 (367)
T 1hv8_A 290 R---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI--SIINRR 345 (367)
T ss_dssp S---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEE--EEECTT
T ss_pred e---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEE--EEEcHH
Confidence 3 7999999999999999999999999999999999999999999877654 445554
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=1.8e-28 Score=287.22 Aligned_cols=313 Identities=17% Similarity=0.212 Sum_probs=219.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCc-ccHHHHHHHHHHHcC--CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~ 359 (1104)
+|+|||.+++.++. .+.++++..+||+|||++++..+...... ...++|||||. .+..||.+++.++.+ ++
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999998874 46789999999999999887666555443 23489999996 667899999999986 46
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcCc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEG 437 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDEa 437 (1104)
.+..++|....+...... ....+|+|+|++.+..... .+....+++||||||
T Consensus 119 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILRL--------------------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp CEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred eEEEEeCCcchHHHHHHh--------------------------cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 777788776544332221 1357899999999864322 233346799999999
Q ss_pred ccccCccc-HHHHHH-Hhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 438 HRLKNKDS-KLFSSL-KQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 438 Hrlkn~~s-~~~~~l-~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
|++.+... .....+ ..+. ....++||||+-. .+. ..+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~----~~~----------------------------------~~~~~ 214 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPL----TVK----------------------------------EFMVK 214 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCH----HHH----------------------------------HHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCH----HHH----------------------------------HHHHH
Confidence 99876431 122222 2222 4467999999620 000 00000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
+ +.......+...++ ... ..+-+
T Consensus 215 ~------------~~~~~~~~~~~~~~---------------------~~~--------------~~~~~---------- 237 (400)
T 1s2m_A 215 H------------LHKPYEINLMEELT---------------------LKG--------------ITQYY---------- 237 (400)
T ss_dssp H------------CSSCEEESCCSSCB---------------------CTT--------------EEEEE----------
T ss_pred H------------cCCCeEEEeccccc---------------------cCC--------------ceeEE----------
Confidence 0 00000000000000 000 00000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
..+....|+..+..++... .+.++|||++....++.+.+.|...|+.+..++|.++..+|..+++.|+++.
T Consensus 238 -------~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (400)
T 1s2m_A 238 -------AFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 308 (400)
T ss_dssp -------EECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred -------EEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 0011245677777777653 5679999999999999999999999999999999999999999999998654
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.|+... ++.|++.+
T Consensus 309 ~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 309 VR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp SS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred Cc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 43 79999999999999999999999999999999999999999997654 45566665
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.9e-28 Score=279.38 Aligned_cols=313 Identities=15% Similarity=0.220 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC--CCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~ 360 (1104)
.+|+|||.+++.++ ..++++++..+||+|||++++..+... ..++|||+|. ++..||.+++.++.+ +..
T Consensus 15 ~~l~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 86 (337)
T 2z0m_A 15 KNFTEVQSKTIPLM----LQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTK 86 (337)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCc
Confidence 36999999999887 467899999999999999887666543 3489999996 677999999999874 467
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCcc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEaH 438 (1104)
+..++|.......... ....+|+|+|++.+.... ..+....|++||+||||
T Consensus 87 ~~~~~~~~~~~~~~~~---------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINR---------------------------VRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp EEEECTTSCHHHHHHH---------------------------HTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred EEEEECCcchHHHHhh---------------------------cCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 7777776554332221 124789999999987532 22334568999999999
Q ss_pred cccCcc--cHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHH
Q 001302 439 RLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1104)
Q Consensus 439 rlkn~~--s~~~~~l~~l~~~-~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~ 515 (1104)
++.+.. ..+...+..+... ..+++||||-. ++...+. ..+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~----~~~~~~~------------------------------~~~~~~ 185 (337)
T 2z0m_A 140 LMFEMGFIDDIKIILAQTSNRKITGLFSATIPE----EIRKVVK------------------------------DFITNY 185 (337)
T ss_dssp HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH----HHHHHHH------------------------------HHSCSC
T ss_pred HhhccccHHHHHHHHhhCCcccEEEEEeCcCCH----HHHHHHH------------------------------HhcCCc
Confidence 986543 2333344444444 45678999921 1111110 000000
Q ss_pred HHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
.. .. .....+......+.+.-..
T Consensus 186 ~~--~~--~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 208 (337)
T 2z0m_A 186 EE--IE--ACIGLANVEHKFVHVKDDW----------------------------------------------------- 208 (337)
T ss_dssp EE--EE--CSGGGGGEEEEEEECSSSS-----------------------------------------------------
T ss_pred ee--ee--cccccCCceEEEEEeChHH-----------------------------------------------------
Confidence 00 00 0000011111111111000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCC
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~ 675 (1104)
.. ++ ..+. ...+.++|||++....++.+.+.|. .+..++|+++..+|..+++.|+++..
T Consensus 209 -----~~------~~----~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~ 267 (337)
T 2z0m_A 209 -----RS------KV----QALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEY 267 (337)
T ss_dssp -----HH------HH----HHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred -----HH------HH----HHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCC
Confidence 00 00 1111 1357899999999999999999887 68899999999999999999987554
Q ss_pred CceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHH
Q 001302 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1104)
Q Consensus 676 ~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~ 747 (1104)
. +|++|.++++|||++.+++||+|+++||+..+.|++||++|.|+...+.+|.. .+.++.+.|.+...
T Consensus 268 ~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 268 D---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp S---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred c---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 3 79999999999999999999999999999999999999999999888888776 55556666554443
No 21
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=4.6e-28 Score=284.73 Aligned_cols=315 Identities=17% Similarity=0.230 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCc-ccHHHHHHHHHHHcC--CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~ 359 (1104)
.|+|||.+++.++ ..++++|+..+||+|||++++..+...+.. ...++|||||. .+..||.+++.++.. ++
T Consensus 59 ~~~~~Q~~ai~~i----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 5999999999887 457889999999999999987666655432 33599999996 577899999999874 45
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEa 437 (1104)
.+..++|........... ....+|+|+|++.+.... ..+....+++||||||
T Consensus 135 ~~~~~~g~~~~~~~~~~~--------------------------~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKL--------------------------DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp CEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEEEECCCCHHHHHHHh--------------------------hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 677777765544333221 124589999999886432 2344456899999999
Q ss_pred ccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 438 Hrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
|++.+.. ..+...+..+. ....+++||||-. ++..++.....+.
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~----------------------------- 235 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH----EILEMTNKFMTDP----------------------------- 235 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGTCSSC-----------------------------
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH----HHHHHHHHHcCCC-----------------------------
Confidence 9987654 23333343443 4568999999821 1111110000000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
..+. . ......++......+.+.
T Consensus 236 ~~~~-~-~~~~~~~~~~~~~~~~~~------------------------------------------------------- 258 (410)
T 2j0s_A 236 IRIL-V-KRDELTLEGIKQFFVAVE------------------------------------------------------- 258 (410)
T ss_dssp EEEC-C-CGGGCSCTTEEEEEEEES-------------------------------------------------------
T ss_pred EEEE-e-cCccccCCCceEEEEEeC-------------------------------------------------------
Confidence 0000 0 000000111111111111
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
....|+..|.+++... .+.++|||++....++.|.+.|...|+.+..++|+++..+|+.+++.|+++.
T Consensus 259 ----------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 259 ----------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp ----------STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred ----------cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 0122455556666553 3569999999999999999999999999999999999999999999998765
Q ss_pred CCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 675 ~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.. +|++|.++++|||++.+++||+||++||+..++|++||++|.|++.. ++.|++..
T Consensus 327 ~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 327 SR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp SC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 43 79999999999999999999999999999999999999999997654 44556654
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=286.74 Aligned_cols=317 Identities=15% Similarity=0.201 Sum_probs=208.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCc-ccHHHHHHHHHHHc--CC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWA--PQ 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~qW~~E~~~~~--p~ 358 (1104)
..++|||.+++..+ ..+.++|+..+||+|||++++..+...... ...++|||+|. .+..||.+++.+++ ..
T Consensus 61 ~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHH----hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 36999999999877 457889999999999999976666555443 33489999996 57789999999986 34
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
..+..+.|........... .....+|+|+|++.+..... .+....+++||+||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKL-------------------------QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp CCEEECCCCTTHHHHHHHH-------------------------TTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred ceEEEEECCcchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 6666667765544433221 11357899999998865422 23344588999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
||++.+.. ..+...+..+. ....++|||||-. ++..++..
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~--------------------------------- 234 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPS----DVLEVTKK--------------------------------- 234 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCH----HHHHHHTT---------------------------------
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH----HHHHHHHH---------------------------------
Confidence 99986543 34444455553 4467999999821 11110000
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
.+... ..+.+.... ... ....+.+....
T Consensus 235 -------------~~~~~--~~~~~~~~~---------------------~~~-----------~~~~~~~~~~~----- 262 (414)
T 3eiq_A 235 -------------FMRDP--IRILVKKEE---------------------LTL-----------EGIRQFYINVE----- 262 (414)
T ss_dssp -------------TCSSC--EEECCCCCC---------------------CCT-----------TSCCEEEEECS-----
T ss_pred -------------HcCCC--EEEEecCCc---------------------cCC-----------CCceEEEEEeC-----
Confidence 00000 000000000 000 00000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
....|+..+..++... .+.++|||++....++.+.+.|...|+.+..++|.++..+|..+++.|+++
T Consensus 263 -----------~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 329 (414)
T 3eiq_A 263 -----------REEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 329 (414)
T ss_dssp -----------SSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC
T ss_pred -----------hHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 0123666666666553 467999999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
.. .+|++|.++++|||++.+++||+||++||+..+.|++||++|.|+... +|.|++..
T Consensus 330 ~~---~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 330 SS---RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp ------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred CC---cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 43 479999999999999999999999999999999999999999997654 45566665
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=1.9e-28 Score=285.85 Aligned_cols=315 Identities=15% Similarity=0.199 Sum_probs=111.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHh-cCC-CCceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GER-ISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~-~~~-~~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
.+|+|||.+++.++. .+.++++..+||+|||++++..+.... ... ..++|||||. ++..||.+++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 379999999998874 467899999999999998655444433 332 3499999996 677899999999874 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
+.+..++|.......... ....+|+|+|++.+..... .+....|++||+||
T Consensus 118 ~~~~~~~g~~~~~~~~~~---------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG---------------------------LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CCEEEECSSCCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eeEEEEeCCCchHHHHhh---------------------------cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 678888886554332211 1246899999999865322 33345789999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
||++.+.. ..+...+..+. ....++|||||-. ++.. .+.
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~----------------------------------~~~ 212 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVLE----------------------------------VTT 212 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHHH----------------------------------HHH
T ss_pred hHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH----HHHH----------------------------------HHH
Confidence 99985432 33444444443 3468999999821 0000 000
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
.+ +....... +.-..... . + +.+. +.
T Consensus 213 ~~------------~~~~~~~~--~~~~~~~~---~---------------------~----~~~~----~~-------- 238 (394)
T 1fuu_A 213 KF------------MRNPVRIL--VKKDELTL---E---------------------G----IKQF----YV-------- 238 (394)
T ss_dssp HH------------CCSCEEEE--ECC-----------------------------------------------------
T ss_pred Hh------------cCCCeEEE--ecCccccC---C---------------------C----ceEE----EE--------
Confidence 00 00001111 11000000 0 0 0000 00
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
..-....|...+..++... .+.++|||++....++.+.+.|...|+.+..++|+++..+|..+++.|+++
T Consensus 239 --------~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 239 --------NVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------EcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 0000112445555555543 456999999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
. ..+|++|.++++|||++.+++||++|++||+..+.|++||++|.|+...+. .|++..
T Consensus 309 ~---~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~ 366 (394)
T 1fuu_A 309 S---SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI--NFVTNE 366 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred C---CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE--EEEchh
Confidence 4 348999999999999999999999999999999999999999999876554 445544
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=2.5e-27 Score=276.26 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=210.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CCCceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
.+|+|||.+++..+... .+.++|+..+||+|||++++..+...... ...++|||||. .+..||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 36999999999887332 34889999999999999987666555432 23489999996 577899999999873 4
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDE 436 (1104)
..+....|..... ......+|+|+|++.+.... ..+..-.+++||+||
T Consensus 104 ~~~~~~~~~~~~~------------------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 104 ITSQLIVPDSFEK------------------------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CCEEEESTTSSCT------------------------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred eeEEEEecCchhh------------------------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 4555555432211 01236789999999986532 223344689999999
Q ss_pred cccccCccc--HHH-HHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHh
Q 001302 437 GHRLKNKDS--KLF-SSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1104)
Q Consensus 437 aHrlkn~~s--~~~-~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L 512 (1104)
||++.+... ... ..+..+. ....+++||||-. .+..++..+
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~------------------------------- 198 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKI------------------------------- 198 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHH-------------------------------
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHh-------------------------------
Confidence 999865332 122 2222232 3467999999831 111000000
Q ss_pred hHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCC
Q 001302 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1104)
Q Consensus 513 ~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~ 592 (1104)
++.... +.+.-.. .... ...+.+..
T Consensus 199 ---------------~~~~~~--~~~~~~~-------------------~~~~-------------~~~~~~~~------ 223 (395)
T 3pey_A 199 ---------------VPNANT--LELQTNE-------------------VNVD-------------AIKQLYMD------ 223 (395)
T ss_dssp ---------------SCSCEE--ECCCGGG-------------------CSCT-------------TEEEEEEE------
T ss_pred ---------------CCCCeE--EEccccc-------------------cccc-------------cccEEEEE------
Confidence 000000 0000000 0000 00000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
......|...+..++... .+.++|||++....++.+.+.|...|+.+..++|.++..+|..+++.|++
T Consensus 224 ----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 224 ----------CKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp ----------CSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred ----------cCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 001234555566655543 46799999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCC------ChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w------Np~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
+... +|++|.++++|||++.+++||+||++| |+..+.|++||++|.|+...+.++
T Consensus 292 g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 292 GRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp TSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 5543 799999999999999999999999999 999999999999999976555443
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=1.9e-26 Score=273.15 Aligned_cols=311 Identities=15% Similarity=0.202 Sum_probs=215.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCC------CCceEEEeCc-ccHHHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER------ISPHLVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~------~~p~LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
.++|+|.+++..+ ..++++|+..+||+|||++++. ++..+.... ...+|||+|. .+..||.+++.+++
T Consensus 78 ~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 5899999999877 4678999999999999998654 445554432 2379999996 67789999999987
Q ss_pred C--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEE
Q 001302 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1104)
Q Consensus 357 p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~v 432 (1104)
. .+++.+++|........... ....+|+|+|++.+..... .+..-.+++|
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECI--------------------------TRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------hcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 4 45677777765543322211 1357899999999865422 2333467899
Q ss_pred EEcCcccccCcc--cHHHHHHHhc---ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHH
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l---~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~ 507 (1104)
|+||||++.+.. ..+...+..+ .....+++|||+- .++..+...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~~--------------------------- 256 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAGE--------------------------- 256 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHHT---------------------------
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHHH---------------------------
Confidence 999999987653 2334444443 2456799999972 111111110
Q ss_pred HHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccC
Q 001302 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1104)
Q Consensus 508 L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~ 587 (1104)
.+..... +.+... ...... + .+.+.
T Consensus 257 -------------------~l~~~~~--i~~~~~---------------------~~~~~~----------i-~~~~~-- 281 (434)
T 2db3_A 257 -------------------FLKNYVF--VAIGIV---------------------GGACSD----------V-KQTIY-- 281 (434)
T ss_dssp -------------------TCSSCEE--EEESST---------------------TCCCTT----------E-EEEEE--
T ss_pred -------------------hccCCEE--EEeccc---------------------cccccc----------c-ceEEE--
Confidence 1111111 111100 000000 0 00000
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHH
Q 001302 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1104)
Q Consensus 588 ~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i 667 (1104)
.+....|...|.++|. ..+.++|||++....++.|.++|...|+++..++|+++..+|..++
T Consensus 282 ---------------~~~~~~k~~~l~~~l~---~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l 343 (434)
T 2db3_A 282 ---------------EVNKYAKRSKLIEILS---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 343 (434)
T ss_dssp ---------------ECCGGGHHHHHHHHHH---HCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHH
T ss_pred ---------------EeCcHHHHHHHHHHHH---hCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 0012234444555544 3455699999999999999999999999999999999999999999
Q ss_pred HHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEee
Q 001302 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1104)
Q Consensus 668 ~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt 734 (1104)
+.|+++... +|++|.++++|||++.+++||+||+++++..++|++||++|.|+...+.+ |++
T Consensus 344 ~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~--~~~ 405 (434)
T 2db3_A 344 RDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS--FFD 405 (434)
T ss_dssp HHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEE--EEC
T ss_pred HHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEE--EEe
Confidence 999876544 89999999999999999999999999999999999999999998765544 455
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=272.61 Aligned_cols=316 Identities=17% Similarity=0.267 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCC-------------------CCceEEEeCc-
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-------------------ISPHLVVAPL- 342 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~-------------------~~p~LIV~P~- 342 (1104)
..|+|+|.+++..+ ..+.++|+..+||+|||+.++. ++..+.... ...+|||+|.
T Consensus 36 ~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 37999999999866 4678999999999999987654 444443321 1368999996
Q ss_pred ccHHHHHHHHHHHc--CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc
Q 001302 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1104)
Q Consensus 343 s~l~qW~~E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~ 420 (1104)
.+..||.+++.++. .++++..++|........... ....+|+|+|++.+...
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~ 165 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL--------------------------ERGCHLLVATPGRLVDM 165 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH--------------------------TTCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh--------------------------hCCCCEEEEChHHHHHH
Confidence 67789999999887 357788888876554433221 12468999999998653
Q ss_pred cc--cccCCcceEEEEcCcccccCcc--cHHHHHHHh--cc---cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHH
Q 001302 421 SA--SLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQ--YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (1104)
Q Consensus 421 ~~--~l~~~~w~~vIvDEaHrlkn~~--s~~~~~l~~--l~---~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~ 491 (1104)
.. .+..-.+++|||||||++.... ..+...+.. +. ....+++||||-. ++..++...
T Consensus 166 l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~---------- 231 (417)
T 2i4i_A 166 MERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARDF---------- 231 (417)
T ss_dssp HHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHHH----------
T ss_pred HHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHHH----------
Confidence 22 2333467899999999986543 222222222 11 2457999999821 111111000
Q ss_pred HHHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 001302 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (1104)
Q Consensus 492 F~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~ 571 (1104)
+......... ......+......+.+
T Consensus 232 --------------------~~~~~~~~~~-~~~~~~~~i~~~~~~~--------------------------------- 257 (417)
T 2i4i_A 232 --------------------LDEYIFLAVG-RVGSTSENITQKVVWV--------------------------------- 257 (417)
T ss_dssp --------------------CSSCEEEEEC-----CCSSEEEEEEEC---------------------------------
T ss_pred --------------------cCCCEEEEeC-CCCCCccCceEEEEEe---------------------------------
Confidence 0000000000 0000000001111111
Q ss_pred HHHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcE
Q 001302 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (1104)
Q Consensus 572 ~~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~ 651 (1104)
....|...|.+++... ..+.++|||++....++.+.++|...|+.+
T Consensus 258 ---------------------------------~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 303 (417)
T 2i4i_A 258 ---------------------------------EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYAC 303 (417)
T ss_dssp ---------------------------------CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred ---------------------------------ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCe
Confidence 1223455555555543 357799999999999999999999999999
Q ss_pred EEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEE
Q 001302 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1104)
Q Consensus 652 ~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1104)
..++|.++.++|..+++.|+++... +|++|.++++|||++.+++||+||++|++..+.|++||++|.|+.. .++.
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~ 378 (417)
T 2i4i_A 304 TSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATS 378 (417)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEE
T ss_pred eEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEE
Confidence 9999999999999999999875544 8999999999999999999999999999999999999999999764 4445
Q ss_pred EeeCC
Q 001302 732 LITRG 736 (1104)
Q Consensus 732 lvt~~ 736 (1104)
|++..
T Consensus 379 ~~~~~ 383 (417)
T 2i4i_A 379 FFNER 383 (417)
T ss_dssp EECGG
T ss_pred EEccc
Confidence 55543
No 27
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=99.94 E-value=3.7e-28 Score=267.55 Aligned_cols=138 Identities=24% Similarity=0.380 Sum_probs=124.7
Q ss_pred CCCCCccccc---cchhccCCChHHHH---HHHHHHHHcCCCCcchhhhchhcc-CCCHHHHHHHHHHHHHhhhhcCCCC
Q 001302 952 EPPPLMEGEG---RSFRVLGFSQNQRA---AFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGILFLTHITEDITDS 1024 (1104)
Q Consensus 952 ~~~pL~e~e~---~~l~~~GF~~~~rr---~F~~~~~k~G~~~~~~~~i~~~l~-~Ks~~ev~~y~~~f~~~~~e~~~d~ 1024 (1104)
++.|||++|. ++|+.+||++|+|+ .|+++|.|||+++ ++.||.+|. +||++||++|+++||.||.| +.|+
T Consensus 103 ~~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d--~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E-i~d~ 179 (374)
T 2y9y_A 103 NSQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNS--IQAIARELAPGKTLEEVRAYAKAFWSNIER-IEDY 179 (374)
T ss_dssp CCSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTC--HHHHHSSCCCSSSHHHHHHHHHHHHHTCSS-CSCC
T ss_pred ccCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhH--HHHHHHHHccCCCHHHHHHHHHHHHHhhhh-hccH
Confidence 4679999974 89999999999998 6677888999976 578999998 99999999999999999985 9999
Q ss_pred ccccCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCC-CCCcccChhhhHHHHHHhhhccc
Q 001302 1025 PTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGL-RGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1025 ~~~~~~i~k~~~k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
+++++.|++|+.+++.+. .++.+|++||+.|. +|+ .+|.++|+++ ++++.|+++||||||||||+|||
T Consensus 180 erii~~IEkgE~ki~r~~---~~~~~L~~Ki~~y~-~P~-----~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~ 248 (374)
T 2y9y_A 180 EKYLKIIENEEEKIKRVK---MQQEALRRKLSEYK-NPF-----FDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGL 248 (374)
T ss_dssp TTTHHHHHHHHHHHHHHH---HHHHHHHHHHTTCS-SHH-----HHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcc-CCH-----HHceeccCCCCCCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999998887774 77899999999999 887 6789999865 36899999999999999999999
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=2.1e-25 Score=261.83 Aligned_cols=327 Identities=14% Similarity=0.193 Sum_probs=215.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CCC-CceEEEeCc-ccHHHHHHHHHHHc---C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~~-~p~LIV~P~-s~l~qW~~E~~~~~---p 357 (1104)
..++|+|.+++..+... .+.++|+..+||+|||++++..+..... ... ..+|||+|. .+..||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 36999999999876321 3588999999999999997555544433 333 389999996 56688888888775 5
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceEEEE
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIV 434 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w~~vIv 434 (1104)
+..+....|...... ......+|+|+|++.+..... .+..-.+++|||
T Consensus 124 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----------------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp TCCEEEECTTCCCCT-----------------------------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred cceEEEeecCcchhh-----------------------------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 667766665432110 012356899999999966432 233346899999
Q ss_pred cCcccccCcc--c-HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHH
Q 001302 435 DEGHRLKNKD--S-KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1104)
Q Consensus 435 DEaHrlkn~~--s-~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~ 510 (1104)
||||++.... . .....+..+. ....+++||||-. +++.++....+...
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~~------------------------ 226 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPDPN------------------------ 226 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSSSCE------------------------
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcCCCe------------------------
Confidence 9999985422 2 2222333333 3467999999831 11111110000000
Q ss_pred HhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCC
Q 001302 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1104)
Q Consensus 511 ~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~ 590 (1104)
.+ ... ......+......+.+.
T Consensus 227 -----~~-~~~-~~~~~~~~~~~~~~~~~--------------------------------------------------- 248 (412)
T 3fht_A 227 -----VI-KLK-REEETLDTIKQYYVLCS--------------------------------------------------- 248 (412)
T ss_dssp -----EE-CCC-GGGSSCTTEEEEEEECS---------------------------------------------------
T ss_pred -----EE-eec-cccccccCceEEEEEcC---------------------------------------------------
Confidence 00 000 00000111111111111
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHH
Q 001302 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1104)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~F 670 (1104)
....|+..+..++.. ..+.++|||++....++.|...|...|+.+..++|.++..+|..+++.|
T Consensus 249 --------------~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 249 --------------SRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp --------------SHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 012345555555554 2467999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEeecCcccccccccCCCEEEEECCCCCh------hhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHH
Q 001302 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1104)
Q Consensus 671 n~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp------~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~ 744 (1104)
+++... +|++|.++++|||++.+++||+||++|++ ..++|++||++|.|+...+ +.|+.. .-+..++.
T Consensus 313 ~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~ 386 (412)
T 3fht_A 313 REGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILN 386 (412)
T ss_dssp HTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHH
T ss_pred HCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHH
Confidence 875543 79999999999999999999999999876 6999999999999976544 344433 23345555
Q ss_pred HHHHH
Q 001302 745 MTKKK 749 (1104)
Q Consensus 745 ~~~~K 749 (1104)
...++
T Consensus 387 ~i~~~ 391 (412)
T 3fht_A 387 RIQEH 391 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=3.6e-25 Score=260.62 Aligned_cols=317 Identities=14% Similarity=0.169 Sum_probs=217.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC-CCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p-~~~v 361 (1104)
.+++|||.+++..+ ..+.++|+..+||+|||+.++..+..+. .....+|||+|. .+..||.+++.++++ ++++
T Consensus 20 ~~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 20 KDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 45889999999876 4678999999999999996665555444 333589999996 677999999999986 7789
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCccccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlk 441 (1104)
..++|............. .....++|+|+|++.+......+....+++|||||||++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~----------------------l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKS----------------------FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp EECCTTSCHHHHHHHHHH----------------------HHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHH
T ss_pred EEEECCCChhhHHHHHHH----------------------hhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhh
Confidence 999887654221111100 0112478999999999766555665688999999999874
Q ss_pred C-------------cccH-HHHHHHhc------------ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 001302 442 N-------------KDSK-LFSSLKQY------------STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1104)
Q Consensus 442 n-------------~~s~-~~~~l~~l------------~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~ 495 (1104)
. .... +...+..+ .....+++||||....+...+. ..
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~-----------------~~ 215 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-----------------RD 215 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH-----------------HH
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH-----------------HH
Confidence 2 2222 23333333 3346789999976554332110 00
Q ss_pred HhccchHHHHHHHHHHhhHHHHHHhHhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 001302 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVV 573 (1104)
Q Consensus 496 f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~--~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~ 573 (1104)
+ +. -.+. ...++.....+ +
T Consensus 216 ~---------------~~--------~~~~~~~~~~~~i~~~~-~----------------------------------- 236 (414)
T 3oiy_A 216 L---------------LN--------FTVGRLVSVARNITHVR-I----------------------------------- 236 (414)
T ss_dssp H---------------HS--------CCSSCCCCCCCSEEEEE-E-----------------------------------
T ss_pred h---------------hc--------cCcCccccccccchhee-e-----------------------------------
Confidence 0 00 0000 00001101000 0
Q ss_pred HHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEE-
Q 001302 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE- 652 (1104)
Q Consensus 574 ~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~- 652 (1104)
...|...|.+++.. .+.++|||++....++.|...|...|+++.
T Consensus 237 --------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 281 (414)
T 3oiy_A 237 --------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGE 281 (414)
T ss_dssp --------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred --------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceeh
Confidence 00123334444444 468999999999999999999999999998
Q ss_pred EEecCCChHHHHHHHHHHccCCCCceEEEee----cCcccccccccC-CCEEEEECCC--CChhhHHHHHHhhHhhCCC-
Q 001302 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSD--WNPHADLQAMARAHRLGQT- 724 (1104)
Q Consensus 653 ridG~~~~~~R~~~i~~Fn~~~~~~~v~Lls----tragg~GINL~~-ad~VIi~D~~--wNp~~~~Qa~gR~hRiGQ~- 724 (1104)
.++|. +|+ ++.|+++... +|++ |.++++|||++. +++||+||++ +++..++|++||++|.|+.
T Consensus 282 ~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~ 352 (414)
T 3oiy_A 282 TWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGV 352 (414)
T ss_dssp SSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTE
T ss_pred hhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCC
Confidence 88884 454 9999876544 6888 999999999999 9999999999 9999999999999999986
Q ss_pred -CeEEEEEEeeCCCHHHHHHHHHHHHHH
Q 001302 725 -NKVMIFRLITRGSIEERMMQMTKKKMV 751 (1104)
Q Consensus 725 -k~V~Vyrlvt~~TvEe~i~~~~~~K~~ 751 (1104)
+...++.|+ -|..+++...+.+.
T Consensus 353 ~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 353 LVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CcceEEEEEE----ccHHHHHHHHHHhc
Confidence 566667777 24455555554443
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=3e-25 Score=268.31 Aligned_cols=305 Identities=17% Similarity=0.160 Sum_probs=212.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
..++|+|.++++.+ ..++++++..+||+|||+.++..+. .. .+.+|||+|. +++.+|.+.+..+ ++.+.
T Consensus 24 ~~~r~~Q~~~i~~i----l~g~d~lv~apTGsGKTl~~~lp~l--~~--~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~ 93 (523)
T 1oyw_A 24 QQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPAL--LL--NGLTVVVSPLISLMKDQVDQLQAN--GVAAA 93 (523)
T ss_dssp SSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHH--HS--SSEEEEECSCHHHHHHHHHHHHHT--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCcHHHHHHHHHHH--Hh--CCCEEEECChHHHHHHHHHHHHHc--CCcEE
Confidence 36899999999877 4678999999999999986643332 22 3589999996 7778999999886 56777
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc--cccccCCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~--~~~l~~~~w~~vIvDEaHrl 440 (1104)
.++|............- ......+|+++|++.+... ...+....+.+|||||||.+
T Consensus 94 ~l~~~~~~~~~~~~~~~----------------------~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMTG----------------------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp EECTTSCHHHHHHHHHH----------------------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 77776543221111000 0123578999999999643 23355568899999999998
Q ss_pred cCccc---HHHH----HHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhh
Q 001302 441 KNKDS---KLFS----SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1104)
Q Consensus 441 kn~~s---~~~~----~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~ 513 (1104)
..... ..+. ....+....+++|||||-.....++...+.+-.|..+..
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------------------------- 206 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------------------------- 206 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-------------------------
T ss_pred CcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-------------------------
Confidence 65331 2222 223344567899999995433333333332111100000
Q ss_pred HHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCc
Q 001302 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1104)
Q Consensus 514 ~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~ 593 (1104)
...-|.....++.
T Consensus 207 -----------~~~r~~l~~~v~~-------------------------------------------------------- 219 (523)
T 1oyw_A 207 -----------SFDRPNIRYMLME-------------------------------------------------------- 219 (523)
T ss_dssp -----------CCCCTTEEEEEEE--------------------------------------------------------
T ss_pred -----------CCCCCceEEEEEe--------------------------------------------------------
Confidence 0000100000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
...++..|.+++.. ..+.++|||++.....+.+.+.|...|+.+..++|+++.++|..+++.|.++
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 285 (523)
T 1oyw_A 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD 285 (523)
T ss_dssp ------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 01123333444433 2578999999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
... +|++|.++|.|||++.+++||+||+++|+..+.|++||++|.|+...+.+
T Consensus 286 ~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 286 DLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp SCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 543 79999999999999999999999999999999999999999998766554
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=1.7e-24 Score=264.50 Aligned_cols=313 Identities=16% Similarity=0.125 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+++|+|.++++.+ ..++++|+..+||.|||+..+..+. . ..+.+|||+|. +++.||.+.+..+ ++.+.
T Consensus 43 ~~~rp~Q~~~i~~i----l~g~d~lv~~pTGsGKTl~~~lpal--~--~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~ 112 (591)
T 2v1x_A 43 EKFRPLQLETINVT----MAGKEVFLVMPTGGGKSLCYQLPAL--C--SDGFTLVICPLISLMEDQLMVLKQL--GISAT 112 (591)
T ss_dssp CSCCTTHHHHHHHH----HTTCCEEEECCTTSCTTHHHHHHHH--T--SSSEEEEECSCHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEECCCChHHHHHHHHHH--H--cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEE
Confidence 36999999999877 4578899999999999987543332 2 23589999995 7788999999998 67787
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhc---ccc----ccCCcceEEEEc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SAS----LKPIKWQCMIVD 435 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~---~~~----l~~~~w~~vIvD 435 (1104)
.++|+............. .......+|+++|++.+... ... +....+.+||||
T Consensus 113 ~l~~~~~~~~~~~~~~~l--------------------~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAEM--------------------VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp ECCSSCCHHHHHHHHHHH--------------------HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHh--------------------hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 777765433221111000 00124678999999988532 111 223368999999
Q ss_pred CcccccCcc-------cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHH
Q 001302 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1104)
Q Consensus 436 EaHrlkn~~-------s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L 508 (1104)
|||.+.... ..+......+....+++|||||-..-..++...+..-.+..+.
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--------------------- 231 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--------------------- 231 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE---------------------
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe---------------------
Confidence 999986432 1222223334556789999999322111111111100000000
Q ss_pred HHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCC
Q 001302 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1104)
Q Consensus 509 ~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~ 588 (1104)
. ....|.....+....-.
T Consensus 232 -------------~--~~~r~nl~~~v~~~~~~----------------------------------------------- 249 (591)
T 2v1x_A 232 -------------A--SFNRPNLYYEVRQKPSN----------------------------------------------- 249 (591)
T ss_dssp -------------C--CCCCTTEEEEEEECCSS-----------------------------------------------
T ss_pred -------------c--CCCCcccEEEEEeCCCc-----------------------------------------------
Confidence 0 00001111111100000
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHH
Q 001302 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1104)
Q Consensus 589 ~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~ 668 (1104)
...++..|.+++... ..+.++|||+......+.|...|...|+.+..++|+++..+|..+++
T Consensus 250 -----------------~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~ 311 (591)
T 2v1x_A 250 -----------------TEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR 311 (591)
T ss_dssp -----------------HHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 001222222232211 15789999999999999999999999999999999999999999999
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
.|..+... +|++|.++|.|||++.++.||+||+++++..+.|++||++|.|+...+.++
T Consensus 312 ~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 312 KWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 99875544 899999999999999999999999999999999999999999987665554
No 32
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.92 E-value=1.6e-26 Score=250.27 Aligned_cols=137 Identities=23% Similarity=0.333 Sum_probs=124.5
Q ss_pred CCCCCccccc---cchhccCCChHHHH---HHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 001302 952 EPPPLMEGEG---RSFRVLGFSQNQRA---AFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSP 1025 (1104)
Q Consensus 952 ~~~pL~e~e~---~~l~~~GF~~~~rr---~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~ 1025 (1104)
++.|||++|. ++|+.+||++|+|+ .|++||.+||+++ ++.||+++.+||++||++|+++||++|.| ++|++
T Consensus 90 ~~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~--~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~e-i~d~e 166 (304)
T 1ofc_X 90 EAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDD--IDNIAKDVEGKTPEEVIEYNAVFWERCTE-LQDIE 166 (304)
T ss_dssp TCCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTC--HHHHTTSSTTCCHHHHHHHHHHHHHHGGG-CTTHH
T ss_pred cCCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHH--HHHHHHHhcCCCHHHHHHHHHHHHHhHHH-hccHH
Confidence 4569999974 89999999999998 7778999999976 67899999999999999999999999985 99999
Q ss_pred cccCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCcccChhhhHHHHHHhhhccc
Q 001302 1026 TFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1026 ~~~~~i~k~~~k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
++++.|++|+.+++.+. ....+|++||+.|. +|+ .+|.++|+++ +++.||++||||||||||+|||
T Consensus 167 k~~~~IE~gE~ki~r~~---~~~~~l~~Ki~~~~-~P~-----~~L~i~y~~~-k~k~yteeEDRfLL~~l~k~G~ 232 (304)
T 1ofc_X 167 RIMGQIERGEGKIQRRL---SIKKALDQKMSRYR-APF-----HQLRLQYGNN-KGKNYTEIEDRFLVCMLHKLGF 232 (304)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCS-SHH-----HHCCCCCTTC-CCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-CcH-----HHhccccCCC-CCCccCHHHHHHHHHHHHHhcC
Confidence 99999999998887774 77799999999999 886 6789999755 8899999999999999999999
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.92 E-value=2.3e-24 Score=281.17 Aligned_cols=308 Identities=17% Similarity=0.187 Sum_probs=213.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc-cHHHHHHHHHHHcCC--
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~qW~~E~~~~~p~-- 358 (1104)
.+++|+|.++++.+...+..+. ++|++.+||+|||++++..+......+ ..+|||||.. +..||.++|.+++++
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 5789999999998877666665 899999999999999875554443332 4899999975 668999999998865
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
.++..++|...........+. ......+|+|+|++.+... +.--++++|||||+|
T Consensus 681 i~v~~l~~~~~~~~~~~~~~~----------------------l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 681 VRIEMISRFRSAKEQTQILAE----------------------VAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEH 735 (1151)
T ss_dssp CCEEEESTTSCHHHHHHHHHH----------------------HHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGG
T ss_pred CeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHhCC---ccccccceEEEechH
Confidence 567777764333221111000 0123578999999988643 233468999999999
Q ss_pred cccCcccHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++.. .....+..+.. .+.|+|||||..+.+.... ..+
T Consensus 736 ~~g~---~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~---~~~------------------------------------ 773 (1151)
T 2eyq_A 736 RFGV---RHKERIKAMRANVDILTLTATPIPRTLNMAM---SGM------------------------------------ 773 (1151)
T ss_dssp GSCH---HHHHHHHHHHTTSEEEEEESSCCCHHHHHHH---TTT------------------------------------
T ss_pred hcCh---HHHHHHHHhcCCCCEEEEcCCCChhhHHHHH---hcC------------------------------------
Confidence 9743 34455555554 4689999999644211100 000
Q ss_pred HHhHhhHhhcCCCcEE---EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 518 RRVKKDVMKELPPKKE---LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e---~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
..-.....|+... .......
T Consensus 774 ---~~~~~i~~~~~~r~~i~~~~~~~------------------------------------------------------ 796 (1151)
T 2eyq_A 774 ---RDLSIIATPPARRLAVKTFVREY------------------------------------------------------ 796 (1151)
T ss_dssp ---SEEEECCCCCCBCBCEEEEEEEC------------------------------------------------------
T ss_pred ---CCceEEecCCCCccccEEEEecC------------------------------------------------------
Confidence 0000000111100 0000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC--CCcEEEEecCCChHHHHHHHHHHcc
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.+..+...++..+ ..|.+++||++.+..++.+.+.|... ++.+..++|.++..+|+++++.|.+
T Consensus 797 -------------~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~ 862 (1151)
T 2eyq_A 797 -------------DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 862 (1151)
T ss_dssp -------------CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc
Confidence 0111122233332 36789999999999999999999876 8899999999999999999999986
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECC-CCChhhHHHHHHhhHhhCCCCeEEEEEEeeC
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDS-DWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~-~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1104)
+.. .+|++|.++++|||++.+++||++++ .|++..+.|++||++|.|+... +|.++..
T Consensus 863 g~~---~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~--~~ll~~~ 921 (1151)
T 2eyq_A 863 QRF---NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY--AWLLTPH 921 (1151)
T ss_dssp TSC---CEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEE--EEEEECC
T ss_pred CCC---cEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceE--EEEEECC
Confidence 544 38999999999999999999999999 5899999999999999986544 4555544
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.92 E-value=1.4e-24 Score=266.59 Aligned_cols=333 Identities=16% Similarity=0.215 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH-HHHhcCC-----CCceEEEeCc-ccHHHHHHHHHHHc-
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----ISPHLVVAPL-STLRNWEREFATWA- 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l-~~l~~~~-----~~p~LIV~P~-s~l~qW~~E~~~~~- 356 (1104)
.|+|||.+++..+.. ..+.++|+..+||+|||++++..+ ..+.... ...+|||+|. .+..||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 599999999976631 257789999999999999865544 4443332 2378999996 67789999999864
Q ss_pred -----CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---ccCCc
Q 001302 357 -----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIK 428 (1104)
Q Consensus 357 -----p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~---l~~~~ 428 (1104)
+...+....|.......+... .....+|+|+|++.+...... ...-.
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l-------------------------~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKM-------------------------NKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHH-------------------------HHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred hcccccceEEEEEECCccHHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 456677777766544433321 113578999999998653221 12234
Q ss_pred ceEEEEcCcccccCcc--cHHHHHHHhc---c-----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhc
Q 001302 429 WQCMIVDEGHRLKNKD--SKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~--s~~~~~l~~l---~-----~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~ 498 (1104)
+++|||||||++.... ..+...+..+ . ....+++|||+-. .+.+ ++.
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~------------------- 232 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LAN------------------- 232 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTT-------------------
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHH---HHH-------------------
Confidence 6899999999987543 1222222222 1 2358999999721 1111 000
Q ss_pred cchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001302 499 INQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578 (1104)
Q Consensus 499 ~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk 578 (1104)
..+.......+...-.. ..... .
T Consensus 233 ---------------------------~~l~~~~~~~~~~~~~~-------------------~~~~~-----------~ 255 (579)
T 3sqw_A 233 ---------------------------NIMNKKECLFLDTVDKN-------------------EPEAH-----------E 255 (579)
T ss_dssp ---------------------------TTCCSSEEEEEESSCSS-------------------SCSSC-----------T
T ss_pred ---------------------------HHcCCCceEEEeecCcc-------------------ccccc-----------c
Confidence 01111111111000000 00000 0
Q ss_pred HhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhC---CCcEEE
Q 001302 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQYER 653 (1104)
Q Consensus 579 ~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~r 653 (1104)
...+.+.... . ....+...+..++..+. ..+.++|||+.....++.+.+.|... |+.+..
T Consensus 256 ~i~~~~~~~~------~---------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~ 320 (579)
T 3sqw_A 256 RIDQSVVISE------K---------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 320 (579)
T ss_dssp TEEEEEEEES------S---------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred ccceEEEEec------c---------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEE
Confidence 0000000000 0 00112233333333333 34779999999999999999999876 999999
Q ss_pred EecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEe
Q 001302 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1104)
Q Consensus 654 idG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1104)
++|.++..+|..+++.|..+.. .+|++|.++++|||++.+++||+||+++++..++|++||++|.|+...+.+ |+
T Consensus 321 ~hg~~~~~~R~~~~~~F~~g~~---~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~ 395 (579)
T 3sqw_A 321 FHGKITQNKRTSLVKRFKKDES---GILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FI 395 (579)
T ss_dssp ESTTSCHHHHHHHHHHHHHCSS---EEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EE
T ss_pred ecCCCCHHHHHHHHHHhhcCCC---eEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE--EE
Confidence 9999999999999999987543 489999999999999999999999999999999999999999997655444 45
Q ss_pred eCCCHHHHHHHHH
Q 001302 734 TRGSIEERMMQMT 746 (1104)
Q Consensus 734 t~~TvEe~i~~~~ 746 (1104)
+.. |...++..
T Consensus 396 ~~~--e~~~~~~l 406 (579)
T 3sqw_A 396 CKD--ELPFVREL 406 (579)
T ss_dssp EGG--GHHHHHHH
T ss_pred ccc--HHHHHHHH
Confidence 543 44444433
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=3.9e-24 Score=262.11 Aligned_cols=326 Identities=15% Similarity=0.203 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH-HHHhcCC-----CCceEEEeCc-ccHHHHHHHHHHHc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----ISPHLVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l-~~l~~~~-----~~p~LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
..|+|+|.+++..+.. ..+.++|+..+||+|||++++..+ ..+.... ...+|||+|. ++..||.+++.++.
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3599999999977631 256789999999999999865544 4444332 1379999995 67789999998863
Q ss_pred ------CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---ccCC
Q 001302 357 ------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPI 427 (1104)
Q Consensus 357 ------p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~---l~~~ 427 (1104)
+...+..+.|........... .....+|+|+|++.+...... ..--
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKM-------------------------NKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHH-------------------------HHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred hhccccCceeEEEEECCcCHHHHHHHH-------------------------hcCCCCEEEECcHHHHHHHHhccccccc
Confidence 345677777765544433221 113578999999998643221 1122
Q ss_pred cceEEEEcCcccccCcc--cHHHHHHHhc---c-----cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHh
Q 001302 428 KWQCMIVDEGHRLKNKD--SKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK 497 (1104)
Q Consensus 428 ~w~~vIvDEaHrlkn~~--s~~~~~l~~l---~-----~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~ 497 (1104)
.+++|||||||++.... ..+...+..+ . ....+++||||-. .+.+ ++..
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~----------------- 284 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANN----------------- 284 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTT-----------------
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHH---HHHH-----------------
Confidence 46899999999986543 1122222222 1 2358999999821 1111 0000
Q ss_pred ccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001302 498 DINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELR 577 (1104)
Q Consensus 498 ~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lr 577 (1104)
.+.......+...-.. .....
T Consensus 285 -----------------------------~~~~~~~~~~~~~~~~-------------------~~~~~----------- 305 (563)
T 3i5x_A 285 -----------------------------IMNKKECLFLDTVDKN-------------------EPEAH----------- 305 (563)
T ss_dssp -----------------------------TCCSSEEEEEESSCSS-------------------SCSSC-----------
T ss_pred -----------------------------hcCCCceEEEeccCCC-------------------Ccccc-----------
Confidence 0111111111000000 00000
Q ss_pred HHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH--HhCCeEEEEecchhHHHHHHHHHhhC---CCcEE
Q 001302 578 KLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFK---KWQYE 652 (1104)
Q Consensus 578 k~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~--~~g~kvLIFsq~~~~ldiL~~~L~~~---g~~~~ 652 (1104)
....+.+.... .. .......+..++..+. ..+.++|||++.....+.+...|... |+++.
T Consensus 306 ~~~~~~~~~~~------~~---------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~ 370 (563)
T 3i5x_A 306 ERIDQSVVISE------KF---------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPIL 370 (563)
T ss_dssp TTEEEEEEEES------ST---------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEE
T ss_pred ccCceEEEECc------hh---------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEE
Confidence 00000000000 00 0011122222333332 35789999999999999999999876 99999
Q ss_pred EEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEE
Q 001302 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1104)
Q Consensus 653 ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1104)
.++|.++..+|..+++.|.++. ..+|++|.+++.|||++.+++||+||+++++..++|++||++|.|+...+ +.|
T Consensus 371 ~~h~~~~~~~R~~~~~~f~~g~---~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~ 445 (563)
T 3i5x_A 371 EFHGKITQNKRTSLVKRFKKDE---SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLF 445 (563)
T ss_dssp EESTTSCHHHHHHHHHHHHHCS---SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEE
T ss_pred EecCCCCHHHHHHHHHHHhcCC---CCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEE
Confidence 9999999999999999998754 34899999999999999999999999999999999999999999976444 344
Q ss_pred eeCC
Q 001302 733 ITRG 736 (1104)
Q Consensus 733 vt~~ 736 (1104)
++..
T Consensus 446 ~~~~ 449 (563)
T 3i5x_A 446 ICKD 449 (563)
T ss_dssp EEGG
T ss_pred Echh
Confidence 5543
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.8e-25 Score=268.39 Aligned_cols=311 Identities=17% Similarity=0.215 Sum_probs=186.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-C-CCceEEEeCc-ccHHHHHHHHHHHcCCCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~-~~p~LIV~P~-s~l~qW~~E~~~~~p~~~v 361 (1104)
.++|||.+++..+... .+.++||..+||+|||++++..+...+.. . ...+|||||. .++.||.++|.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999776322 24889999999999999976655554433 3 3389999996 5779999999999865444
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEaHr 439 (1104)
.+..+...... .......+|+|+|++.+.... ..+..-.+++|||||||+
T Consensus 219 ~~~~~~~~~~~----------------------------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 219 KTAFGIKDSVP----------------------------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp CEEC--------------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred eEEEEeCCccc----------------------------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 33332221110 001236789999999986532 223344689999999999
Q ss_pred ccCcc---cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHH
Q 001302 440 LKNKD---SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1104)
Q Consensus 440 lkn~~---s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~ 515 (1104)
+.... ......+..+.. ...++|||||- +...++.. .+
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~------------------~~------------------- 312 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS-ERVEKYAE------------------RF------------------- 312 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCS-THHHHHHH------------------HH-------------------
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC-HHHHHHHH------------------Hh-------------------
Confidence 86522 233333333443 34699999982 11111110 00
Q ss_pred HHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 516 LLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 516 ~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
++.... +.+.-.... .....+.+..
T Consensus 313 ------------~~~~~~--i~~~~~~~~--------------------------------~~~~~~~~~~--------- 337 (508)
T 3fho_A 313 ------------APNANE--IRLKTEELS--------------------------------VEGIKQLYMD--------- 337 (508)
T ss_dssp ------------STTCEE--ECCCCCC------------------------------------CCCCEEEE---------
T ss_pred ------------cCCCeE--EEeccccCC--------------------------------cccceEEEEE---------
Confidence 000000 000000000 0000000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCC
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~ 675 (1104)
......|...+..++... .+.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++..
T Consensus 338 -------~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~ 408 (508)
T 3fho_A 338 -------CQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS 408 (508)
T ss_dssp -------C--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSC
T ss_pred -------CCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 001223445555555443 46799999999999999999999999999999999999999999999986554
Q ss_pred CceEEEeecCcccccccccCCCEEEEECCC------CChhhHHHHHHhhHhhCCCCeEEEE
Q 001302 676 SRFCFLLSTRAGGLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIF 730 (1104)
Q Consensus 676 ~~~v~Llstragg~GINL~~ad~VIi~D~~------wNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1104)
. +|++|.++++|||++.+++||++|++ +++..+.|++||++|.|+...+.++
T Consensus 409 ~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 409 K---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp C---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred e---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 3 79999999999999999999999999 7899999999999999977666554
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-23 Score=265.57 Aligned_cols=346 Identities=15% Similarity=0.161 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeE
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~v 361 (1104)
+.+|+|||.+++..+ ..+.++|++.+||+|||+++...+...+.. .+++||++|. .+..||.++|..+++ .+
T Consensus 84 ~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~-g~rvL~l~PtkaLa~Q~~~~l~~~~~--~v 156 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DV 156 (1010)
T ss_dssp SSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHS--CE
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc-CCeEEEECChHHHHHHHHHHHHHHhC--CE
Confidence 357999999999887 457889999999999999986555544433 2589999996 777899999999886 67
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcCccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDEaHr 439 (1104)
.+++|+... ....+|+|+|++.+..... ...--.+++|||||||+
T Consensus 157 glltGd~~~---------------------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~ 203 (1010)
T 2xgj_A 157 GLMTGDITI---------------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 203 (1010)
T ss_dssp EEECSSCEE---------------------------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEEeCCCcc---------------------------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh
Confidence 777775321 1246899999998864321 12223678999999999
Q ss_pred ccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHH
Q 001302 440 LKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1104)
Q Consensus 440 lkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~ 516 (1104)
+.+.. ......+..+. ....++||||+- |..++...+..+... +..
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~--n~~e~a~~l~~~~~~-----------------------------~~~ 252 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIP--NAMEFAEWICKIHSQ-----------------------------PCH 252 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHHHHHTS-----------------------------CEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCC--CHHHHHHHHHhhcCC-----------------------------CeE
Confidence 97653 23333444444 356799999962 233322222111000 000
Q ss_pred HHHhHhhHhhcCC-CcEEEEEecc-------CCH---HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HhCCcc
Q 001302 517 LRRVKKDVMKELP-PKKELILRVE-------LSS---KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK-LCCHPY 584 (1104)
Q Consensus 517 lRR~k~dv~~~lP-~k~e~~v~v~-------ls~---~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk-~~~hP~ 584 (1104)
+ .....-| |...+++... +.. .....|... +..+.. ....|.
T Consensus 253 v-----i~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~~~ 306 (1010)
T 2xgj_A 253 I-----VYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA---------------------MASISNQIGDDPN 306 (1010)
T ss_dssp E-----EEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH---------------------HHTCC--------
T ss_pred E-----EecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH---------------------HHHHhhhhccccc
Confidence 0 0000011 1122222111 000 000001100 000000 000000
Q ss_pred ccCCCCCCcccchHHHHHHHhh---hh-HHHHHHHHHHHHHHhC-CeEEEEecchhHHHHHHHHHhhCCCc---------
Q 001302 585 MLEGVEPDIEDTNESFKQLLES---SG-KLQLLDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQ--------- 650 (1104)
Q Consensus 585 l~~~~~~~~~~~~~~~~~li~~---S~-Kl~~L~~lL~~l~~~g-~kvLIFsq~~~~ldiL~~~L~~~g~~--------- 650 (1104)
+. ............ .+ ....+..++..+...+ .++|||+......+.+...|...++.
T Consensus 307 ------~~--~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 307 ------ST--DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred ------cc--ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 00 000000000000 00 0233455555555544 59999999999999999998765543
Q ss_pred ------------------------------EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE
Q 001302 651 ------------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1104)
Q Consensus 651 ------------------------------~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI 700 (1104)
+..++|+++..+|+.+++.|.++.-. +|++|.++++|||++++++||
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEE
Confidence 78899999999999999999875443 899999999999999999999
Q ss_pred E----ECC----CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 701 I----YDS----DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 701 i----~D~----~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
. ||. +|+|..+.|++||++|.|+.....+|.|++.+
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9 999 89999999999999999999889999999866
No 38
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=5.2e-24 Score=255.73 Aligned_cols=310 Identities=15% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CCCC-ceEEEeCc-ccHHHHHHHHHHH---cC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVVAPL-STLRNWEREFATW---AP 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~~~-p~LIV~P~-s~l~qW~~E~~~~---~p 357 (1104)
..++|+|.+++..+.. ..+.++|+..+||+|||++++..+..... ...+ .+|||+|. .+..||.+.+.++ .+
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3699999999987732 13588999999999999986554443333 2223 79999996 5567887776655 45
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceEEEE
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIV 434 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w~~vIv 434 (1104)
.+.+....|..... .......+|+|+|++.+..... .+..-.+++|||
T Consensus 191 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 191 ELKLAYAVRGNKLE-----------------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp TCCEEEESTTCCCC-----------------------------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CceEEEEeCCcccc-----------------------------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 66776666543210 0012356899999999965432 233346889999
Q ss_pred cCcccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHH
Q 001302 435 DEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1104)
Q Consensus 435 DEaHrlkn~~s---~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~ 510 (1104)
||||++..... .....+..+. ....+++||||-. +++.+..
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~------------------------------- 286 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQ------------------------------- 286 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHH-------------------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHH-------------------------------
Confidence 99999864222 2222222232 3457999999831 1111110
Q ss_pred HhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCC
Q 001302 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1104)
Q Consensus 511 ~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~ 590 (1104)
..+|......+... ... .. .+.+ .++.
T Consensus 287 ---------------~~~~~~~~i~~~~~----~~~-~~-------------------------~~~~----~~~~---- 313 (479)
T 3fmp_B 287 ---------------KVVPDPNVIKLKRE----EET-LD-------------------------TIKQ----YYVL---- 313 (479)
T ss_dssp ---------------HHSSSEEEEEEC-----------------------------------------------------
T ss_pred ---------------HHcCCCeEEecccc----ccC-cC-------------------------CceE----EEEE----
Confidence 01222211111110 000 00 0000 0000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHH
Q 001302 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1104)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~F 670 (1104)
.-....|+..|..++... .+.++||||+.....+.|...|...|+.+..++|.++..+|..+++.|
T Consensus 314 ------------~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 314 ------------CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 000123444455555443 356899999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEeecCcccccccccCCCEEEEECCCCCh------hhHHHHHHhhHhhCCCCeEEE
Q 001302 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP------HADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 671 n~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp------~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
.++.. .+|++|.+++.|||++.+++||+||+++++ ..++|++||++|.|+...+.+
T Consensus 380 ~~g~~---~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 380 REGKE---KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred HcCCC---cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 86543 489999999999999999999999999876 689999999999997655443
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.89 E-value=9e-24 Score=263.56 Aligned_cols=308 Identities=16% Similarity=0.227 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~--~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
.+|+|+|.++++.+...+..+ .+.||..+||+|||++++..+......+ ..+||++|. .+..||.++|.+|++ +
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 479999999999887665544 4899999999999999877666554432 489999997 566899999999986 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
+++..++|+..........+- ......+|+|+|++.+... +.-.++++|||||+|
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSG----------------------LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQH 500 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHH----------------------HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCC
T ss_pred ceEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHhhh---hhccCCceEEecccc
Confidence 788888887654332111110 0123578999999988542 223467899999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 439 rlkn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
++.... ...+... ...+.++|||||....+. +..+-+.
T Consensus 501 r~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~----~~~~g~~---------------------------------- 539 (780)
T 1gm5_A 501 RFGVKQ---REALMNKGKMVDTLVMSATPIPRSMA----LAFYGDL---------------------------------- 539 (780)
T ss_dssp CC--------CCCCSSSSCCCEEEEESSCCCHHHH----HHHTCCS----------------------------------
T ss_pred hhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHH----HHHhCCc----------------------------------
Confidence 974321 1111111 246789999999643211 1000000
Q ss_pred HHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccch
Q 001302 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 597 (1104)
...+...+|+....+...-..
T Consensus 540 ---~~s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 560 (780)
T 1gm5_A 540 ---DVTVIDEMPPGRKEVQTMLVP-------------------------------------------------------- 560 (780)
T ss_dssp ---SCEEECCCCSSCCCCEECCCC--------------------------------------------------------
T ss_pred ---ceeeeeccCCCCcceEEEEec--------------------------------------------------------
Confidence 000111222211000000000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecch--------hHHHHHHHHHhh---CCCcEEEEecCCChHHHHHH
Q 001302 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF---KKWQYERIDGKVGGAERQIR 666 (1104)
Q Consensus 598 ~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~--------~~ldiL~~~L~~---~g~~~~ridG~~~~~~R~~~ 666 (1104)
..+...+...+......|++++|||+.+ ..++.+.+.|.. .++.+..++|+++..+|..+
T Consensus 561 ---------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 561 ---------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp ---------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred ---------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 0011112223333335678888888754 346777788876 57899999999999999999
Q ss_pred HHHHccCCCCceEEEeecCcccccccccCCCEEEEECCC-CChhhHHHHHHhhHhhCCCCeEEE
Q 001302 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 667 i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~-wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
++.|.++... +|++|.++++|||++.+++||++|++ |+...+.|++||++|.|+...+.+
T Consensus 632 ~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 632 MLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred HHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 9999865443 79999999999999999999999998 478899999999999997765543
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.3e-22 Score=255.11 Aligned_cols=348 Identities=15% Similarity=0.170 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv 362 (1104)
.+|+|+|.+++..+ ..+.++|++.+||+|||++++..+...... .+.+||++|. .+..||.++|..++. .+.
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-g~rvlvl~PtraLa~Q~~~~l~~~~~--~Vg 255 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-KQRVIYTSPIKALSNQKYRELLAEFG--DVG 255 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTS--SEE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEcCcHHHHHHHHHHHHHHhC--Ccc
Confidence 57999999999876 678999999999999999986666555433 2489999996 667899999999886 566
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIvDEaHrl 440 (1104)
+++|+... ....+|+|+|++.+...... ..--.+.+|||||||++
T Consensus 256 lltGd~~~---------------------------------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 256 LMTGDITI---------------------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp EECSSCBC---------------------------------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred EEeCcccc---------------------------------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 67665321 13578999999988653221 11125789999999999
Q ss_pred cCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 441 KNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 441 kn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
.... ......+..+. ....++||||+ .|. .++...+..+...... ++
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATi-pn~-~e~a~~l~~~~~~~~~----------------------------vi 352 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATI-PNA-MEFAEWICKIHSQPCH----------------------------IV 352 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSC-SSC-HHHHHHHHHHTCSCEE----------------------------EE
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCC-CCH-HHHHHHHHhhcCCCeE----------------------------EE
Confidence 7642 22333444444 34679999994 333 3333332221111000 00
Q ss_pred HHhHhhHhhcCC-CcEEEEEec----------cCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCcccc
Q 001302 518 RRVKKDVMKELP-PKKELILRV----------ELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1104)
Q Consensus 518 RR~k~dv~~~lP-~k~e~~v~v----------~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~ 586 (1104)
....-| |...+++.. .........|...+.. +...... .+...
T Consensus 353 ------~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~----l~~~~~~----------------~~~~~ 406 (1108)
T 3l9o_A 353 ------YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS----ISNQIGD----------------DPNST 406 (1108)
T ss_dssp ------EECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT----C---------------------------
T ss_pred ------ecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHH----HHhhhcc----------------ccccc
Confidence 000001 111111111 0110011111111100 0000000 00000
Q ss_pred CCCCCCcccchHHHHHHHhhhhH---HHHHHHHHHHHHHh-CCeEEEEecchhHHHHHHHHHhhCCCc------------
Q 001302 587 EGVEPDIEDTNESFKQLLESSGK---LQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLEDYLTFKKWQ------------ 650 (1104)
Q Consensus 587 ~~~~~~~~~~~~~~~~li~~S~K---l~~L~~lL~~l~~~-g~kvLIFsq~~~~ldiL~~~L~~~g~~------------ 650 (1104)
.... . .. ........+ ...+.+++..+... +.++|||+......+.+...|...++.
T Consensus 407 ~~~~-~---~~---~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 479 (1108)
T 3l9o_A 407 DSRG-K---KG---QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 479 (1108)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHG
T ss_pred cccc-c---cc---cccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 0000 0 00 000000001 23344555555444 469999999999999999888654333
Q ss_pred ---------------------------EEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEEC
Q 001302 651 ---------------------------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD 703 (1104)
Q Consensus 651 ---------------------------~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D 703 (1104)
+..++|+++..+|..+++.|.++... +|++|.+++.|||++++++||.++
T Consensus 480 ~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 480 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp GGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecC
Confidence 78899999999999999999875544 899999999999999999999888
Q ss_pred CCCChh--------hHHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 704 SDWNPH--------ADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 704 ~~wNp~--------~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
..|++. .+.|+.||++|.|+.....+|.++....
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred cccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 877655 5999999999999999999999988763
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.87 E-value=5.6e-21 Score=245.74 Aligned_cols=391 Identities=16% Similarity=0.105 Sum_probs=226.9
Q ss_pred ccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC-cccHHHH
Q 001302 270 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNW 348 (1104)
Q Consensus 270 ~~~~~~~~P~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P-~s~l~qW 348 (1104)
.|..+...+....+.+|+|+|.+++..+ ..+.++|++.+||+|||++++..+..+... .+.+||++| .++..||
T Consensus 24 ~f~~l~~~~~~~~~f~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~-g~~vlvl~PtraLa~Q~ 98 (997)
T 4a4z_A 24 NFDELIPNPARSWPFELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-MTKTIYTSPIKALSNQK 98 (997)
T ss_dssp THHHHCSSCSCCCSSCCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT-TCEEEEEESCGGGHHHH
T ss_pred chhhhhHhHHHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHH
Confidence 3443333333344578999999998766 567899999999999999765555544433 247999999 5778999
Q ss_pred HHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccC
Q 001302 349 EREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKP 426 (1104)
Q Consensus 349 ~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~ 426 (1104)
.++|..++++.++..++|+... ....+|+|+|++.+..... .+..
T Consensus 99 ~~~l~~~~~~~~v~~l~G~~~~---------------------------------~~~~~IlV~Tpe~L~~~l~~~~~~l 145 (997)
T 4a4z_A 99 FRDFKETFDDVNIGLITGDVQI---------------------------------NPDANCLIMTTEILRSMLYRGADLI 145 (997)
T ss_dssp HHHHHTTC--CCEEEECSSCEE---------------------------------CTTSSEEEEEHHHHHHHHHHTCSGG
T ss_pred HHHHHHHcCCCeEEEEeCCCcc---------------------------------CCCCCEEEECHHHHHHHHHhCchhh
Confidence 9999999888899988886421 1346899999999865322 1122
Q ss_pred CcceEEEEcCcccccCc--ccHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHH
Q 001302 427 IKWQCMIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1104)
Q Consensus 427 ~~w~~vIvDEaHrlkn~--~s~~~~~l~~l~~-~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~ 503 (1104)
-.+++|||||||++.+. .......+..+.. ...++|||||- +. .+|.+++.....
T Consensus 146 ~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~--n~------------------~ef~~~l~~~~~-- 203 (997)
T 4a4z_A 146 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP--NT------------------YEFANWIGRTKQ-- 203 (997)
T ss_dssp GGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT--TH------------------HHHHHHHHHHHT--
T ss_pred cCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC--Ch------------------HHHHHHHhcccC--
Confidence 36789999999998654 3334455555543 46799999972 22 223333221000
Q ss_pred HHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEe--------c-cCCHHHHHHHHHHHHHHHHHHHhcCCchh-HHHHH-
Q 001302 504 QISRLHRMLAPHLLRRVKKDVMKELPPKKELILR--------V-ELSSKQKEYYKAILTRNYQILTRRGGAQI-SLINV- 572 (1104)
Q Consensus 504 ~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~--------v-~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~-~l~~~- 572 (1104)
.+.. --.....|...++.+. + .........|.... ..+........ .....
T Consensus 204 ---------~~~~-----vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 204 ---------KNIY-----VISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK----EILNGESAKGAPSKTDNG 265 (997)
T ss_dssp ---------CCEE-----EEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH----HHHC--------------
T ss_pred ---------CceE-----EEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH----HHhhcccccccccccccc
Confidence 0000 0000011111111111 0 11111111121111 11100000000 00000
Q ss_pred -------------HHHHHH-------HhCCccccCCCCCCcccchHH-HHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEe
Q 001302 573 -------------VMELRK-------LCCHPYMLEGVEPDIEDTNES-FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYS 631 (1104)
Q Consensus 573 -------------~~~Lrk-------~~~hP~l~~~~~~~~~~~~~~-~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFs 631 (1104)
..+... .-..+................ .........++..|.+++.. ..+.++|||+
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~ 343 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFV 343 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEE
Confidence 000000 000000000000000000000 00000112334444444433 2347999999
Q ss_pred cchhHHHHHHHHHhhCCC---------------------------------------cEEEEecCCChHHHHHHHHHHcc
Q 001302 632 QFQHMLDLLEDYLTFKKW---------------------------------------QYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 632 q~~~~ldiL~~~L~~~g~---------------------------------------~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
......+.+...|...|+ .+..++|+++..+|+.+++.|..
T Consensus 344 ~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~ 423 (997)
T 4a4z_A 344 FSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK 423 (997)
T ss_dssp SCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 999999999999977666 47899999999999999999987
Q ss_pred CCCCceEEEeecCcccccccccCCCEEEEECCCC---------ChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHH
Q 001302 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1104)
Q Consensus 673 ~~~~~~v~Llstragg~GINL~~ad~VIi~D~~w---------Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~ 743 (1104)
+... +|++|.+++.|||+++ .+||+++.+. ++..+.|+.||++|.|+.....+|.+...+..+..++
T Consensus 424 G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 424 GFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp TCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred CCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHH
Confidence 6544 8999999999999999 7777755554 9999999999999999999999988887665555544
Q ss_pred H
Q 001302 744 Q 744 (1104)
Q Consensus 744 ~ 744 (1104)
.
T Consensus 500 ~ 500 (997)
T 4a4z_A 500 K 500 (997)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.6e-20 Score=236.50 Aligned_cols=326 Identities=16% Similarity=0.149 Sum_probs=209.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcCCCCceEEEeCcc-cHHHHHHHHHHHcC-CCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERISPHLVVAPLS-TLRNWEREFATWAP-QMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~~~~p~LIV~P~s-~l~qW~~E~~~~~p-~~~v 361 (1104)
.|+|+|.+++..+ +..+.++|++.+||+|||+++...+. .+... .+.+|+++|.. +..+|.+++.++.+ +.++
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~r~La~q~~~~~~~~~~~g~~v 105 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPLRALTNEKYLTFKDWELIGFKV 105 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSCHHHHHHHHHHHGGGGGGTCCE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEE
Confidence 6999999998752 35688999999999999999855554 44323 35999999965 77899999966553 5778
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcCccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIvDEaHr 439 (1104)
..++|+..... ......+|+|+|++.+...... ..--.+++|||||+|.
T Consensus 106 ~~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 106 AMTSGDYDTDD-----------------------------AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp EECCSCSSSCC-----------------------------GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EEEeCCCCCch-----------------------------hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 77777532110 0113678999999988653221 1112568999999999
Q ss_pred ccCc--ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHHH
Q 001302 440 LKNK--DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1104)
Q Consensus 440 lkn~--~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~l 517 (1104)
+.+. ...+...+..+.....++|||||- |..++...+. ...+..
T Consensus 157 l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l~---~~~~~~----------------------------- 202 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKWLG---AEPVAT----------------------------- 202 (715)
T ss_dssp GGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHHHT---CEEEEC-----------------------------
T ss_pred cCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHhC---CCccCC-----------------------------
Confidence 8642 223334444555677899999983 2344333221 110000
Q ss_pred HHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcccch
Q 001302 518 RRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTN 597 (1104)
Q Consensus 518 RR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~~~ 597 (1104)
. .... |....+....... ......+... .....
T Consensus 203 -----~-~r~~-~l~~~~~~~~~~~-------------------------------------~~~~~~~~~~--~~~~~- 235 (715)
T 2va8_A 203 -----N-WRPV-PLIEGVIYPERKK-------------------------------------KEYNVIFKDN--TTKKV- 235 (715)
T ss_dssp -----C-CCSS-CEEEEEEEECSST-------------------------------------TEEEEEETTS--CEEEE-
T ss_pred -----C-CCCC-CceEEEEecCCcc-------------------------------------cceeeecCcc--hhhhc-
Confidence 0 0001 1111111100000 0000000000 00000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCC-----------------------------
Q 001302 598 ESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK----------------------------- 648 (1104)
Q Consensus 598 ~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g----------------------------- 648 (1104)
.....++..+.+ +...+.++|||+......+.+...|....
T Consensus 236 ------~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 236 ------HGDDAIIAYTLD----SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp ------ESSSHHHHHHHH----HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred ------ccchHHHHHHHH----HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 001122223332 33468899999999998888888876431
Q ss_pred -------CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----EC-------CCCChhh
Q 001302 649 -------WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-------SDWNPHA 710 (1104)
Q Consensus 649 -------~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D-------~~wNp~~ 710 (1104)
..+..++|+++.++|..+.+.|.++.- .+|++|.+++.|||++++++||. || .++++..
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~ 382 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI---KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIME 382 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCS---CEEEECGGGGGSSCCCBSEEEECCC--------------CHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCC---eEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHH
Confidence 348889999999999999999986533 38999999999999999999998 99 7999999
Q ss_pred HHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 711 DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 711 ~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
+.|+.|||+|.|+.++..+|+|++...
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999998764
No 43
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=9.8e-21 Score=237.73 Aligned_cols=321 Identities=18% Similarity=0.170 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc-cHHHHHHHHHHHcC-CCeEE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP-QMNVV 362 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~qW~~E~~~~~p-~~~vv 362 (1104)
+|+|+|.+++..+ ..+.++|++.+||+|||+++...+...... .+++|+++|.. +..+|.+++.++.+ +.++.
T Consensus 25 ~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 6899999999875 468899999999999999985554433332 35999999965 77899999976654 57888
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccccc--CCcceEEEEcCcccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK--PIKWQCMIVDEGHRL 440 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~--~~~w~~vIvDEaHrl 440 (1104)
.++|+..... ......+|+|+|++.+......-. --.+++|||||+|.+
T Consensus 100 ~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 100 ISTGDYESRD-----------------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp EECSSCBCCS-----------------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred EEeCCCCcch-----------------------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 8888642210 012367899999998864322111 125689999999998
Q ss_pred cCc--ccHHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhH
Q 001302 441 KNK--DSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1104)
Q Consensus 441 kn~--~s~~~~~l~~l----~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~ 514 (1104)
... ...+...+..+ .....++||||+- |..++.. ++....+..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~~-------------------------- 199 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADYYVS-------------------------- 199 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEEEEC--------------------------
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCcccC--------------------------
Confidence 763 22222333333 2456799999973 2444332 222111000
Q ss_pred HHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCcc
Q 001302 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1104)
Q Consensus 515 ~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~ 594 (1104)
..-|-.....+...-. ....+.......
T Consensus 200 -----------~~r~~~l~~~~~~~~~-----------------------------------------~~~~~~~~~~~~ 227 (702)
T 2p6r_A 200 -----------DWRPVPLVEGVLCEGT-----------------------------------------LELFDGAFSTSR 227 (702)
T ss_dssp -----------CCCSSCEEEEEECSSE-----------------------------------------EEEEETTEEEEE
T ss_pred -----------CCCCccceEEEeeCCe-----------------------------------------eeccCcchhhhh
Confidence 0001000111100000 000000000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC---------------------------
Q 001302 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------------------------- 647 (1104)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~--------------------------- 647 (1104)
.-.+... +..+...+.++|||++.....+.+...|...
T Consensus 228 -----------~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 292 (702)
T 2p6r_A 228 -----------RVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLA 292 (702)
T ss_dssp -----------ECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHH
T ss_pred -----------hhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHH
Confidence 0002222 2233356889999999998888777776532
Q ss_pred ---CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----EC---CCCChhhHHHHHHh
Q 001302 648 ---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD---SDWNPHADLQAMAR 717 (1104)
Q Consensus 648 ---g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D---~~wNp~~~~Qa~gR 717 (1104)
+..+..++|+++.++|..+.+.|.++.- .+|++|.+++.|||++++++||. || .++++..+.|++||
T Consensus 293 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 293 ECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI---KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHTTCCEECTTSCHHHHHHHHHHHHTTSC---CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTT
T ss_pred HHHhcCeEEecCCCCHHHHHHHHHHHHCCCC---eEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhh
Confidence 2346779999999999999999986533 38999999999999999999998 77 68999999999999
Q ss_pred hHhhCCCCeEEEEEEeeCCCHHH
Q 001302 718 AHRLGQTNKVMIFRLITRGSIEE 740 (1104)
Q Consensus 718 ~hRiGQ~k~V~Vyrlvt~~TvEe 740 (1104)
|+|.|+.+...+|.+++....+.
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHH
T ss_pred cCCCCCCCCceEEEEecCccHHH
Confidence 99999999999999999877543
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.86 E-value=2.2e-21 Score=244.35 Aligned_cols=319 Identities=18% Similarity=0.153 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC-CCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p-~~~v 361 (1104)
.|+|+|.+++..+ +..+.++|++.+||+|||+++ ++++..+... .+.+|+++|. .+..+|.+++.++.+ +.++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 6999999998751 245889999999999999998 4455455432 3589999995 778999999976654 6788
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--ccCCcceEEEEcCccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--l~~~~w~~vIvDEaHr 439 (1104)
..++|+..... ......+|+|+|++.+...... ..--.+++|||||+|.
T Consensus 99 ~~~~G~~~~~~-----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 99 AMATGDYDSKD-----------------------------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp EEECSCSSCCC-----------------------------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred EEecCCCCccc-----------------------------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 88888532110 0113678999999988543221 1112578999999999
Q ss_pred ccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHHHHHHHhhHHH
Q 001302 440 LKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1104)
Q Consensus 440 lkn~--~s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~~L~~~L~~~~ 516 (1104)
+... ...+...+..+. ....++||||+- |..++.. |+....+
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~~~~~------------------------------ 194 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAE---WLNAELI------------------------------ 194 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHH---HTTEEEE------------------------------
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhCCccc------------------------------
Confidence 8752 223333344444 457899999973 2333322 2211100
Q ss_pred HHHhHhhHhhcC-CCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccccCCCCCCccc
Q 001302 517 LRRVKKDVMKEL-PPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1104)
Q Consensus 517 lRR~k~dv~~~l-P~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~~~~~~~~~~ 595 (1104)
.... |-.....+...-. .+..+... .
T Consensus 195 --------~~~~rp~~l~~~~~~~~~-----------------------------------------~~~~~~~~---~- 221 (720)
T 2zj8_A 195 --------VSDWRPVKLRRGVFYQGF-----------------------------------------VTWEDGSI---D- 221 (720)
T ss_dssp --------ECCCCSSEEEEEEEETTE-----------------------------------------EEETTSCE---E-
T ss_pred --------CCCCCCCcceEEEEeCCe-----------------------------------------eeccccch---h-
Confidence 0001 1111111110000 00000000 0
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhC----------------------------
Q 001302 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK---------------------------- 647 (1104)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~---------------------------- 647 (1104)
....+...+ ..+...++++|||+......+.+...|...
T Consensus 222 ---------~~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 222 ---------RFSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp ---------ECSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred ---------hhhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHH
Confidence 001112222 223356889999999998888777777532
Q ss_pred -----CCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----EC----CCCChhhHHHH
Q 001302 648 -----KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD----SDWNPHADLQA 714 (1104)
Q Consensus 648 -----g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D----~~wNp~~~~Qa 714 (1104)
...+..++|+++.++|..+.+.|.++.- .+|++|.+++.|||+++.++||. || .++++..+.|+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr 365 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGII---KAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQM 365 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS---CEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC---eEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHH
Confidence 1248899999999999999999986543 38999999999999999999988 77 58999999999
Q ss_pred HHhhHhhCCCCeEEEEEEeeCCCHHH
Q 001302 715 MARAHRLGQTNKVMIFRLITRGSIEE 740 (1104)
Q Consensus 715 ~gR~hRiGQ~k~V~Vyrlvt~~TvEe 740 (1104)
+|||+|.|+.+...+|.+++....+.
T Consensus 366 ~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 366 LGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999999999999999887554
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.85 E-value=5.5e-20 Score=238.49 Aligned_cols=275 Identities=12% Similarity=0.173 Sum_probs=185.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc-CCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~-p~~~v 361 (1104)
.++.|+|.+++..+ ..+.++|+..++|+|||+.++..+..+.. ....+|||+|. .+..|+.+.|..+. .++++
T Consensus 77 f~pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~~-~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v 151 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKI 151 (1104)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCeEEEEechHHHHHHHHHHHHHhhCCCCeE
Confidence 35889999998766 46789999999999999976666555542 33489999995 66689999999976 45789
Q ss_pred EEEecChhH---HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcc
Q 001302 362 VMYVGTSQA---RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1104)
Q Consensus 362 v~~~g~~~~---r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaH 438 (1104)
..++|.... ...+... ....++|+|+|++.+......+..-.+++|||||||
T Consensus 152 ~~l~Gg~~~~er~~~~~~l-------------------------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSF-------------------------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVD 206 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHH-------------------------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHH
T ss_pred EEEeCCCCHHHHHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCC
Confidence 999987654 2222111 113478999999999765554555578899999999
Q ss_pred cccCcc-------------cH-HHHHHHhcc------------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHH
Q 001302 439 RLKNKD-------------SK-LFSSLKQYS------------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492 (1104)
Q Consensus 439 rlkn~~-------------s~-~~~~l~~l~------------~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F 492 (1104)
.+.... .. +...+..+. ....+++||||....+.+.+. -.++....
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~i~v------- 278 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLNFTV------- 278 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTCCCC-------
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcceeEEe-------
Confidence 864321 11 233333332 346799999976554332110 00000000
Q ss_pred HHHHhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 001302 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1104)
Q Consensus 493 ~~~f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1104)
.. .....+......+.+
T Consensus 279 ----------------------------~~-~~~~~~~i~~~~~~~---------------------------------- 295 (1104)
T 4ddu_A 279 ----------------------------GR-LVSVARNITHVRISS---------------------------------- 295 (1104)
T ss_dssp ----------------------------CB-CCCCCCCEEEEEESC----------------------------------
T ss_pred ----------------------------cc-CCCCcCCceeEEEec----------------------------------
Confidence 00 000000111111111
Q ss_pred HHHHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEE
Q 001302 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYE 652 (1104)
Q Consensus 573 ~~~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ 652 (1104)
.|...|.++|.. .+.++|||++....++.|..+|...|+++.
T Consensus 296 -----------------------------------~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~ 337 (1104)
T 4ddu_A 296 -----------------------------------RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVG 337 (1104)
T ss_dssp -----------------------------------CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEE
T ss_pred -----------------------------------CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCee
Confidence 122333444444 468999999999999999999999999998
Q ss_pred -EEecCCChHHHHHHHHHHccCCCCceEEEee----cCcccccccccC-CCEEEEECCCC
Q 001302 653 -RIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW 706 (1104)
Q Consensus 653 -ridG~~~~~~R~~~i~~Fn~~~~~~~v~Lls----tragg~GINL~~-ad~VIi~D~~w 706 (1104)
.++| +|.+ ++.|.++... +|++ |.+++.|||++. +++||+||.|-
T Consensus 338 ~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 338 ETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred eEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 8888 2555 9999876654 7888 999999999999 99999999997
No 46
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.84 E-value=2.7e-20 Score=237.98 Aligned_cols=339 Identities=14% Similarity=0.156 Sum_probs=201.0
Q ss_pred CCcHHHHHHHHHHHHhhc----------CCCcEEEEcCCCchHHHHHHHHHHHHhcCC-CCceEEEeC-cccHHHHHHHH
Q 001302 285 SLHPYQLEGLNFLRFSWS----------KQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREF 352 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~----------~~~~~ILademGlGKTiqai~~l~~l~~~~-~~p~LIV~P-~s~l~qW~~E~ 352 (1104)
.|||||.+|++++...+. .+.+|++.+.||+|||++++.++..+.... ..++||||| ..+..||..+|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 599999999999876432 246899999999999999977764443322 348999999 67789999999
Q ss_pred HHHcCCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---c-cCCc
Q 001302 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---L-KPIK 428 (1104)
Q Consensus 353 ~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~---l-~~~~ 428 (1104)
..|.+.. + .|........... .....+|+|+|++.+...... + ..-.
T Consensus 351 ~~f~~~~---v-~~~~s~~~l~~~L-------------------------~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 351 QRFSPDS---V-NGSENTAGLKRNL-------------------------DKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp HTTSTTC---S-SSSCCCHHHHHHH-------------------------HCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred HHhcccc---c-ccccCHHHHHHHh-------------------------cCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 9988641 1 1211111111000 013568999999999753221 1 1126
Q ss_pred ceEEEEcCcccccCcccHHHHHH-HhcccccEEEEecCCCCCC-------HHHHHHHHHhhcCCCCCChHHHHHHHhccc
Q 001302 429 WQCMIVDEGHRLKNKDSKLFSSL-KQYSTRHRVLLTGTPLQNN-------LDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1104)
Q Consensus 429 w~~vIvDEaHrlkn~~s~~~~~l-~~l~~~~rllLTgTPlqN~-------~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~ 500 (1104)
+.+||+|||||+... ..++.+ ..+....+++|||||.... ..++| +..
T Consensus 402 ~~lvIiDEAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~F---------------------G~~- 457 (1038)
T 2w00_A 402 QVVFIFDECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVF---------------------GRE- 457 (1038)
T ss_dssp CEEEEEESCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHH---------------------CSE-
T ss_pred ccEEEEEccchhcch--HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHh---------------------CCe-
Confidence 789999999997542 233333 4566678999999997532 11211 110
Q ss_pred hHHHHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 001302 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1104)
Q Consensus 501 ~~~~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~ 580 (1104)
+..+-++...++ ..+.|... .+....+ .+..+ . ...... .....
T Consensus 458 -----------i~~Y~l~~AI~d--g~l~p~~v--~y~~v~~----~~~~~--------~-~e~d~~-------~~~~i- 501 (1038)
T 2w00_A 458 -----------LHSYVITDAIRD--EKVLKFKV--DYNDVRP----QFKSL--------E-TETDEK-------KLSAA- 501 (1038)
T ss_dssp -----------EEEECHHHHHHH--TSSCCEEE--EECCCCG----GGHHH--------H-TCCCHH-------HHHHT-
T ss_pred -----------eEeecHHHHHhC--CCcCCeEE--EEEeccc----hhhhc--------c-ccccHH-------HHHHH-
Confidence 000000000000 11222211 1121111 01100 0 000000 00000
Q ss_pred CCccccCCCCCCcccchHHHHHHHhhhhHHHH-HHHHHHHHHH---------hCCeEEEEecchhHHHHHHHHHhhCC--
Q 001302 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQL-LDKMMVKLKE---------QGHRVLIYSQFQHMLDLLEDYLTFKK-- 648 (1104)
Q Consensus 581 ~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~-L~~lL~~l~~---------~g~kvLIFsq~~~~ldiL~~~L~~~g-- 648 (1104)
.+-. .+....++.. +..++..+.. .|.++||||.....+..+.+.|...+
T Consensus 502 ~~~~------------------~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~ 563 (1038)
T 2w00_A 502 ENQQ------------------AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEE 563 (1038)
T ss_dssp CSTT------------------TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------------HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhh
Confidence 0000 0001122222 3334444432 35689999999999888888886543
Q ss_pred ----------CcEE-EEecC----------C----------Ch-----------------------------HHHHHHHH
Q 001302 649 ----------WQYE-RIDGK----------V----------GG-----------------------------AERQIRID 668 (1104)
Q Consensus 649 ----------~~~~-ridG~----------~----------~~-----------------------------~~R~~~i~ 668 (1104)
+++. .++|. + +. ..|..+++
T Consensus 564 ~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~ 643 (1038)
T 2w00_A 564 AANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQ 643 (1038)
T ss_dssp HTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHH
T ss_pred hcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 5553 44442 1 11 14788899
Q ss_pred HHccCCCCceEEEeecCcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCC--CeEEEEEEee
Q 001302 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT--NKVMIFRLIT 734 (1104)
Q Consensus 669 ~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~--k~V~Vyrlvt 734 (1104)
+|.++.- -+|++|....+|+|.+.+ .++++|.+-+++.++||+||+.|.+.. ....|+.|+.
T Consensus 644 ~Fk~g~i---~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 644 RVKNQDI---DLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHTTSS---SEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHcCCC---eEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9976543 389999999999999999 677889999999999999999999864 3467777774
No 47
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.83 E-value=1.8e-22 Score=204.94 Aligned_cols=138 Identities=23% Similarity=0.412 Sum_probs=98.7
Q ss_pred CCccccccccccccCcCCCC---CcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhhc
Q 001302 99 LNDIDKILDCEMRPTVAGDS---DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1104)
Q Consensus 99 ~~~iekil~wr~~p~~~~~~---~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~ 175 (1104)
.+.|+.||+-|......... .............||||||+|+||+||||+|+++|.. +|++ +|+.||.++..
T Consensus 12 ~~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~----~~gl-kKl~nf~kk~~ 86 (177)
T 2h1e_A 12 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQFI 86 (177)
T ss_dssp CCCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCS----CTTH-HHHHHHHHHHT
T ss_pred CCcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhh----chHH-HHHHHHHHHhh
Confidence 45688999986543211100 0000001223457999999999999999999999963 5776 48999988764
Q ss_pred c--------CCCCchhhh----------ccCCCccchhhhhhhcc-----CCccceeeeeeeeeccccccccccCCcc-c
Q 001302 176 S--------NNNAEEDFV----------AIRPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-A 231 (1104)
Q Consensus 176 ~--------~~~~~e~~~----------~i~~~~~~verIi~~r~-----~~~~~~yLVKWkgL~Y~~~tWe~~~~~~-~ 231 (1104)
. ...++++.. .+.++|++|||||++|. .++..+|||||+||||++||||.+..+. .
T Consensus 87 ~~e~~~~~~~~~~~ed~E~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~ 166 (177)
T 2h1e_A 87 IEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 166 (177)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHH
T ss_pred hhhhhhhcccCCChHHHHHhhhhhhhhhhcccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhh
Confidence 2 122333221 24589999999999994 5678999999999999999999988764 4
Q ss_pred cHHHHHHHHH
Q 001302 232 FQPEIERFIK 241 (1104)
Q Consensus 232 ~~~~i~~~~~ 241 (1104)
++..|++|.+
T Consensus 167 ~~~~I~~y~~ 176 (177)
T 2h1e_A 167 APEQVKHFQK 176 (177)
T ss_dssp CHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 7899999864
No 48
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.83 E-value=2.9e-22 Score=205.15 Aligned_cols=143 Identities=28% Similarity=0.531 Sum_probs=102.1
Q ss_pred CCCCccccccccccccCc-CCCCC----ccc--------ccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhH
Q 001302 97 SPLNDIDKILDCEMRPTV-AGDSD----VSK--------LGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (1104)
Q Consensus 97 ~~~~~iekil~wr~~p~~-~~~~~----~~~--------~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~ 163 (1104)
...+.|++||.|||.... .+... ... .........+|||||+|+||+||||+|+++|.+.. ..+.
T Consensus 11 ~~~~~i~~il~~r~gk~~~~~~~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~--~~~~ 88 (187)
T 2b2y_A 11 EEFETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN--VRGM 88 (187)
T ss_dssp -CCCBEEEEEEEEEECTTCCSSSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTT--CBCH
T ss_pred hhhhhHHHhhhhhcCCCCCCCCCceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccc--hhhH
Confidence 346789999999974432 22110 000 11111234699999999999999999999998631 2233
Q ss_pred HHHHHhhhhhhccC-----CCCchhh----------hccCCCccchhhhhhhcc---CCccceeeeeeeeeccccccccc
Q 001302 164 RTKVNNFHRQMSSN-----NNAEEDF----------VAIRPEWTTVDRILACRG---EDDEKEYLVKYKELSYDECYWEY 225 (1104)
Q Consensus 164 ~~kl~~f~~~~~~~-----~~~~e~~----------~~i~~~~~~verIi~~r~---~~~~~~yLVKWkgL~Y~~~tWe~ 225 (1104)
.++.+|.++.... ..++++. ..+.++|++|||||+++. .++..+|||||+||||++||||.
T Consensus 89 -~kl~nf~kk~~~~~~~~~~~s~Ed~e~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~ 167 (187)
T 2b2y_A 89 -KKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWED 167 (187)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEC
T ss_pred -HHHHHHHHhhhccccccccCCHHHHhhhhhhhhHHhhhhhhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccc
Confidence 5899998876432 1122221 236789999999999986 56889999999999999999999
Q ss_pred cCCcc-ccHHHHHHHHHh
Q 001302 226 ESDIS-AFQPEIERFIKI 242 (1104)
Q Consensus 226 ~~~~~-~~~~~i~~~~~~ 242 (1104)
+.++. .++..|++|.++
T Consensus 168 ~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 168 GALISKKFQACIDEYFSR 185 (187)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHhh
Confidence 87764 578999999874
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.79 E-value=9.7e-19 Score=227.00 Aligned_cols=317 Identities=13% Similarity=0.148 Sum_probs=204.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCC--C
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~--~ 359 (1104)
|..+ |+|.+++.-+ ..+.++|+..+||+|||+.++.++..+... ...+|||+|. .+..|+.+.+.++++. +
T Consensus 55 g~~p-~iQ~~ai~~i----l~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRI----LRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CSCC-HHHHHHHHHH----HTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCH-HHHHHHHHHH----HhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 3458 9999998766 367899999999999998666666555443 3589999996 5668899999988864 3
Q ss_pred ----eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEc
Q 001302 360 ----NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1104)
Q Consensus 360 ----~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvD 435 (1104)
.+..++|...........+ .....+|+|+|++.+......|. .+++||||
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~------------------------~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViD 182 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQ------------------------NLRNFKIVITTTQFLSKHYRELG--HFDFIFVD 182 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHH------------------------SGGGCSEEEEEHHHHHHCSTTSC--CCSEEEES
T ss_pred CccceEEEEeCCCChhhHHHHHh------------------------hccCCCEEEEcHHHHHHHHHHhc--cCCEEEEe
Confidence 6778888654332111110 01127899999999987655554 57799999
Q ss_pred CcccccCcccHHHHHHHhcc------------cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHH
Q 001302 436 EGHRLKNKDSKLFSSLKQYS------------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1104)
Q Consensus 436 EaHrlkn~~s~~~~~l~~l~------------~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~ 503 (1104)
|||++.+....+...+..+. ....+++|||+-.. .++. ..+...+.
T Consensus 183 Eah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~~------ 240 (1054)
T 1gku_B 183 DVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQLL------ 240 (1054)
T ss_dssp CHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHHH------
T ss_pred ChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcce------
Confidence 99998775444444444332 23468899887432 1100 00000000
Q ss_pred HHHHHHHHhhHHHHHHhHhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCc
Q 001302 504 QISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1104)
Q Consensus 504 ~~~~L~~~L~~~~lRR~k~dv~~~lP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP 583 (1104)
.+ ... ......+......+ .
T Consensus 241 ------------~i-~v~-~~~~~~~~i~~~~~--~-------------------------------------------- 260 (1054)
T 1gku_B 241 ------------NF-DIG-SSRITVRNVEDVAV--N-------------------------------------------- 260 (1054)
T ss_dssp ------------CC-CCS-CCEECCCCEEEEEE--S--------------------------------------------
T ss_pred ------------EE-Ecc-CcccCcCCceEEEe--c--------------------------------------------
Confidence 00 000 00000000000000 0
Q ss_pred cccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHH
Q 001302 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1104)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R 663 (1104)
..|...|..++.. .+.++|||++....++.|.++|... ++...++|.+
T Consensus 261 -----------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~----- 308 (1054)
T 1gku_B 261 -----------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK----- 308 (1054)
T ss_dssp -----------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----
T ss_pred -----------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----
Confidence 1112223333332 2678999999999999999999988 9999999987
Q ss_pred HHHHHHHccCCCCceEEEee----cCcccccccccCC-CEEEEECCC---------------------------------
Q 001302 664 QIRIDRFNAKNSSRFCFLLS----TRAGGLGINLATA-DTVIIYDSD--------------------------------- 705 (1104)
Q Consensus 664 ~~~i~~Fn~~~~~~~v~Lls----tragg~GINL~~a-d~VIi~D~~--------------------------------- 705 (1104)
..+++.|..+... +|++ |.++++|||++.+ ++||+||.+
T Consensus 309 ~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1054)
T 1gku_B 309 KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 385 (1054)
T ss_dssp SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTT
T ss_pred HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHH
Confidence 4788999876544 6777 9999999999995 999999999
Q ss_pred --------------------------------------CChhhHHHHHHhhHhhCCCC--eEEEEEEeeCCCHHHHHHHH
Q 001302 706 --------------------------------------WNPHADLQAMARAHRLGQTN--KVMIFRLITRGSIEERMMQM 745 (1104)
Q Consensus 706 --------------------------------------wNp~~~~Qa~gR~hRiGQ~k--~V~Vyrlvt~~TvEe~i~~~ 745 (1104)
.++..++|++||++|.|... .+.+|.+. + |..++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~--~--d~~~~~~ 461 (1054)
T 1gku_B 386 LPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE--D--DSELLSA 461 (1054)
T ss_dssp CTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--S--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe--c--CHHHHHH
Confidence 78999999999999988764 34444443 3 4556666
Q ss_pred HHHHHHH
Q 001302 746 TKKKMVL 752 (1104)
Q Consensus 746 ~~~K~~l 752 (1104)
..+++..
T Consensus 462 l~~~l~~ 468 (1054)
T 1gku_B 462 FIERAKL 468 (1054)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 6666554
No 50
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.74 E-value=7.2e-18 Score=187.72 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC--CCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~ 360 (1104)
.+|+|||.+++.++.. +.++||+++||+|||+++++++..+...+.+++|||||. +++.||.+++.+|.. ...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 4799999999987744 367899999999999999888877665555699999996 778999999999963 335
Q ss_pred EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccc
Q 001302 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1104)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrl 440 (1104)
+..+.|...... ......+|+|+||+.+......+ .-.+++||+||||++
T Consensus 188 ~~~~~~~~~~~~-----------------------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 188 IKKIGGGASKDD-----------------------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLA 237 (282)
T ss_dssp EEECSTTCSSTT-----------------------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGC
T ss_pred EEEEeCCCcchh-----------------------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccC
Confidence 555444322110 01246789999999997654322 236799999999999
Q ss_pred cCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001302 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1104)
Q Consensus 441 kn~~s~~~~~l~~l-~~~~rllLTgTPlqN~~~EL~~ll~fL~p 483 (1104)
.+. .....+..+ ...++|+|||||. |+..+++.+..++.|
T Consensus 238 ~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 238 TGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp CHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred Ccc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 864 445555666 5778999999995 555778888777765
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.73 E-value=7.8e-18 Score=198.70 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=86.3
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCE----
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT---- 698 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~---- 698 (1104)
.+.++|||++.....+.+.+.|...|+++..++|. +|+.+++.|.++... +|++|.+.+.|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 46799999999999999999999999999999996 688899999876544 899999999999999 555
Q ss_pred -------------EEEECCCCChhhHHHHHHhhHhhCCCC-eEEEE
Q 001302 699 -------------VIIYDSDWNPHADLQAMARAHRLGQTN-KVMIF 730 (1104)
Q Consensus 699 -------------VIi~D~~wNp~~~~Qa~gR~hRiGQ~k-~V~Vy 730 (1104)
||.++.+.++..+.|+.||++|.|... .+.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577889999999999999999998644 44443
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.72 E-value=1.6e-16 Score=194.59 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+..|.+++......|.+|||||......+.|...|...|+++..++|.....+|..+...|. .+ .++|+|.
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~---~g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ---KG--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS---TT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC---CC--eEEEeCC
Confidence 456888999988887778999999999999999999999999999999999987666654443443 22 2799999
Q ss_pred ccccccccc--------CCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEE
Q 001302 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1104)
Q Consensus 686 agg~GINL~--------~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1104)
.+|.|+|+. ...+||.||.+-++..|.|++||++|.|..-...
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 999999999 6789999999999999999999999999765443
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=2.5e-17 Score=194.83 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
+.+.++|||++.....+.+.+.|...|+++..++| ++|..+++.|.++... +|++|.+.+.|||++ +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEe
Confidence 35789999999999999999999999999999999 4688999999875444 899999999999999 999985
Q ss_pred -------------------ECCCCChhhHHHHHHhhHhhCC
Q 001302 702 -------------------YDSDWNPHADLQAMARAHRLGQ 723 (1104)
Q Consensus 702 -------------------~D~~wNp~~~~Qa~gR~hRiGQ 723 (1104)
+|.+.++..+.|+.||++|.|.
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 54
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.71 E-value=7.7e-18 Score=200.01 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=84.8
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
+.+.++|||++.....+.|...|...|+.+..++|.+ ++.+++.|.++... +|++|.+++.|||++. +.||.
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEE
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEE
Confidence 3467999999999999999999999999999999865 46788999765443 8999999999999999 99999
Q ss_pred EC--------------------CCCChhhHHHHHHhhHhhCCC
Q 001302 702 YD--------------------SDWNPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 702 ~D--------------------~~wNp~~~~Qa~gR~hRiGQ~ 724 (1104)
|| .+.++..+.|++||++|.|..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 88 889999999999999999973
No 55
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=8e-17 Score=165.49 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.+.|+..|.++|... .+.++|||++....++.|...|...|+++..++|.++..+|..+++.|+++... +|++|.
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 467999999998864 567999999999999999999999999999999999999999999999875544 799999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
++++|||++.+++||+||++||+..++|++||++|.|+...+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999999999999999999999999999998765543
No 56
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=1.1e-16 Score=173.21 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=110.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC
Q 001302 279 EFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP 357 (1104)
Q Consensus 279 ~~~~~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p 357 (1104)
.+..+.+|+|||.+++..+ ..+.++||+++||+|||+++++++..+ .+++|||||. +++.||.+++.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred cccCCCCcCHHHHHHHHHH----HhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3444578999999999865 345679999999999999998887764 3589999997 7779999999994
Q ss_pred CCe-EEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcC
Q 001302 358 QMN-VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1104)
Q Consensus 358 ~~~-vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDE 436 (1104)
+.. +..+.|... ...+|+|+||+.+......+. -.|++|||||
T Consensus 157 ~~~~v~~~~g~~~-----------------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDE 200 (237)
T 2fz4_A 157 GEEYVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 200 (237)
T ss_dssp CGGGEEEESSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred CCCeEEEEeCCCC-----------------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEEC
Confidence 455 777766532 245799999999987655442 3589999999
Q ss_pred cccccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 001302 437 GHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1104)
Q Consensus 437 aHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~ 471 (1104)
||++.+.. ....+..+...++|+|||||.+++-
T Consensus 201 aH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 201 VHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp SSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred CccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 99997753 3345566678899999999987653
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.69 E-value=9e-16 Score=187.44 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
....|+.+|.+.+......|..|||||......+.|...|...|+++..++|.....+|..+.+.|..+ .++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-----~VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-----AVTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-----CEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-----eEEEec
Confidence 346799999999988878899999999999999999999999999999999998766666566666543 279999
Q ss_pred CcccccccccCC-------------------------------------CEEEEECCCCChhhHHHHHHhhHhhCCCCeE
Q 001302 685 RAGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1104)
Q Consensus 685 ragg~GINL~~a-------------------------------------d~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V 727 (1104)
..+|.|+|+... .+||.+|.+-++..|.|++||++|.|..-..
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999976544
Q ss_pred EE
Q 001302 728 MI 729 (1104)
Q Consensus 728 ~V 729 (1104)
..
T Consensus 577 ~~ 578 (853)
T 2fsf_A 577 RF 578 (853)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=176.72 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=99.6
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCcchhhhch--hccCCCHHHHHHHHHHHHHhhhhcCCCCccccCCCCCCcc------
Q 001302 965 RVLGFSQNQRAAFVQILMRFGVGDFDWKEFTP--RLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGL------ 1036 (1104)
Q Consensus 965 ~~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~--~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~~~~i~k~~~------ 1036 (1104)
.+.|||..+.|.|+++++|||.+...|+.|++ +|.+||.++|++|+++||.+|.+.+.++++..++++++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT 85 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence 56899999999999999999987777889985 5889999999999999999998888887777665555432
Q ss_pred --------chhHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccc--CCCCCCcccChhhhHHHHHHhhhcccc
Q 001302 1037 --------RIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRY--PGLRGGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1037 --------k~~~~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
..+.++.|+..|.+|+++|..+. +|. .++.+.+ ++.++++.|+++||++||+|||+|||.
T Consensus 86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~-~~~-----~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g 155 (211)
T 4b4c_A 86 FRISGVQVNAKLVISHEEELIPLHKSIPSDP-EER-----KQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYG 155 (211)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHSCSSH-HHH-----HTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTT
T ss_pred hhhcccchhHHHHHHhHHHHHHHHHHHHhch-hhH-----HHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcC
Confidence 34678999999999999998876 342 2344444 356678999999999999999999985
No 59
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.69 E-value=1.1e-16 Score=163.03 Aligned_cols=134 Identities=20% Similarity=0.351 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.+.|+..|.++|.. ..+.++|||++....++.|...|...|+++..++|+++..+|..+++.|+.+... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 56799999999876 3577999999999999999999999999999999999999999999999876443 799999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHHHHHHHHHHH
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEe~i~~~~~~ 748 (1104)
++++|||++.+++||+||++||+..+.|++||++|.|+...+ +.|++.. |...+....+
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987655 4455543 4444444443
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=169.16 Aligned_cols=126 Identities=19% Similarity=0.328 Sum_probs=98.1
Q ss_pred hhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec
Q 001302 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1104)
Q Consensus 605 ~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst 684 (1104)
..+.|+..|.++|.... .+.++|||++....++.|...|...|+.+..++|+++..+|+.+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 35779999999988743 578999999999999999999999999999999999999999999999876544 79999
Q ss_pred CcccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 685 ragg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
+++++|||++.+++||+||++||+..++|++||++|.|++..+ +.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA--TSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE--EEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE--EEEEchh
Confidence 9999999999999999999999999999999999999986544 4556543
No 61
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.68 E-value=3.4e-15 Score=182.54 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
...|+.+|.+.+......|..||||+......+.|...|...|+++..|+|.....++.-+.+.|.. + .++|+|.
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~---G--~VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR---G--GVTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST---T--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC---C--eEEEecc
Confidence 4568999999888888889999999999999999999999999999999999765555445455543 2 2799999
Q ss_pred cccccccccCC----------------------------------------------------CEEEEECCCCChhhHHH
Q 001302 686 AGGLGINLATA----------------------------------------------------DTVIIYDSDWNPHADLQ 713 (1104)
Q Consensus 686 agg~GINL~~a----------------------------------------------------d~VIi~D~~wNp~~~~Q 713 (1104)
.+|+|+|+... .+||.+|.+-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999864 49999999999999999
Q ss_pred HHHhhHhhCCCCeEE
Q 001302 714 AMARAHRLGQTNKVM 728 (1104)
Q Consensus 714 a~gR~hRiGQ~k~V~ 728 (1104)
++||++|.|..-...
T Consensus 597 r~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 597 LRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHTSSGGGCCEEEE
T ss_pred HhcccccCCCCeeEE
Confidence 999999999765444
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.68 E-value=5.5e-17 Score=200.11 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=85.9
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi 701 (1104)
+.+.++|||++.....+.+...|...|+++..++|. +|..+++.|.++... +|++|.+++.|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999993 799999999865443 899999999999999 999997
Q ss_pred --------------------ECCCCChhhHHHHHHhhHhh-CCCCeE
Q 001302 702 --------------------YDSDWNPHADLQAMARAHRL-GQTNKV 727 (1104)
Q Consensus 702 --------------------~D~~wNp~~~~Qa~gR~hRi-GQ~k~V 727 (1104)
||.+.++..+.|++||++|. |+.-.+
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 56778889999999999999 444333
No 63
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.67 E-value=7.1e-17 Score=192.06 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=87.0
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE-
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII- 701 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi- 701 (1104)
.+.++|||++.....+.|.+.|...|+.+..++|. +|..+++.|.++.. .+|++|.+++.|||++. +.||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~---~iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDW---DFVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCC---SEEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCc---eEEEECChHHhCeecCC-CEEEEC
Confidence 47799999999999999999999999999999984 67788889976543 38999999999999999 99998
Q ss_pred -------------------ECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 702 -------------------YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 702 -------------------~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
||.+.++..+.|++||++|.|.. +-..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999963 22345566654
No 64
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.67 E-value=2e-16 Score=193.79 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=89.2
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEE--
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV-- 699 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~V-- 699 (1104)
+.+.++|||++.....+.|.+.|...|+++..++|. +|.++++.|.++... +|++|.+++.|||++ +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEE
Confidence 357799999999999999999999999999999984 788899999875444 899999999999997 8888
Q ss_pred ------------------EEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEee
Q 001302 700 ------------------IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1104)
Q Consensus 700 ------------------Ii~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt 734 (1104)
|+||.+-++..++|++||++|.|..+.. .|.|++
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 7777788999999999999999864332 455665
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=164.81 Aligned_cols=123 Identities=22% Similarity=0.317 Sum_probs=106.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.+.|+..|.++|.. .+.++|||++....++.|..+|...|+++..++|+++..+|..+++.|+++... +|++|.
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 46788888777764 467999999999999999999999999999999999999999999999876543 799999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
++++|||++.+++||+||++||+..++|++||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997654 4456554
No 66
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.64 E-value=3.4e-16 Score=159.67 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 608 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
.|+..|.+++... .+.++|||++....++.+...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3899999998874 578999999999999999999999999999999999999999999999875543 79999999
Q ss_pred cccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCH
Q 001302 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1104)
++|+|++.+++||+||++||+..+.|++||++|.|+...+ +.|++.+..
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 9999999999999999999999999999999999976654 556776643
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=1.3e-14 Score=194.89 Aligned_cols=317 Identities=17% Similarity=0.239 Sum_probs=185.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHH-HcC--CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFAT-WAP--QM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~-~~p--~~ 359 (1104)
.+.|.|.+++.-+ +..+.+++++.+||+|||+.+ ++++..+.....+.+|+|+|. ++..|-.+++.+ +.+ +.
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 5889999998755 467889999999999999998 555555655555689999995 555665555543 332 57
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCC----cceEEEEc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVD 435 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~----~w~~vIvD 435 (1104)
+|..++|+....... ..+.+|+|+|++.+.......... ...+||+|
T Consensus 1003 ~V~~ltGd~~~~~~~-----------------------------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKL-----------------------------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp CEEECCSCHHHHHHH-----------------------------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred EEEEEECCCCcchhh-----------------------------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEee
Confidence 888888876543211 135689999999874322111111 34689999
Q ss_pred CcccccCcccHHHHH-HHhc-------c-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhccchHHHHH
Q 001302 436 EGHRLKNKDSKLFSS-LKQY-------S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1104)
Q Consensus 436 EaHrlkn~~s~~~~~-l~~l-------~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~f~~~~~~~~~~ 506 (1104)
|+|.+.......... +..+ . .-..++||||- .|..++..-|.--....+. |...
T Consensus 1054 E~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~~~----~~~~----------- 1116 (1724)
T 4f92_B 1054 EVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATSTFN----FHPN----------- 1116 (1724)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTEEE----CCGG-----------
T ss_pred chhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCeEE----eCCC-----------
Confidence 999997644332222 2222 1 23568999994 3455554433211100000 0000
Q ss_pred HHHHHhhHHHHHHhHhhHhhcCC-CcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhCCccc
Q 001302 507 RLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1104)
Q Consensus 507 ~L~~~L~~~~lRR~k~dv~~~lP-~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~~Lrk~~~hP~l 585 (1104)
.-| |...++............. .....
T Consensus 1117 --------------------~RPvpL~~~i~~~~~~~~~~~~~-~~~~~------------------------------- 1144 (1724)
T 4f92_B 1117 --------------------VRPVPLELHIQGFNISHTQTRLL-SMAKP------------------------------- 1144 (1724)
T ss_dssp --------------------GCSSCEEEEEEEECCCSHHHHHH-TTHHH-------------------------------
T ss_pred --------------------CCCCCeEEEEEeccCCCchhhhh-hhcch-------------------------------
Confidence 001 1122222222211110000 00000
Q ss_pred cCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHH--------------------------
Q 001302 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL-------------------------- 639 (1104)
Q Consensus 586 ~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldi-------------------------- 639 (1104)
+...+.. ...++.+|||+........
T Consensus 1145 ---------------------------~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1145 ---------------------------VYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp ---------------------------HHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred ---------------------------HHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 0000000 0122333333333222211
Q ss_pred -----------HHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEE----ECC
Q 001302 640 -----------LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDS 704 (1104)
Q Consensus 640 -----------L~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi----~D~ 704 (1104)
|.+.| ...+..++|+++..+|..+.+.|.++.- .+|++|..++.||||++..+||. ||.
T Consensus 1197 ~~~l~~~~d~~L~~~l---~~GIa~hHagL~~~~R~~VE~lF~~G~i---~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg 1270 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETL---LNGVGYLHEGLSPMERRLVEQLFSSGAI---QVVVASRSLCWGMNVAAHLVIIMDTQYYNG 1270 (1724)
T ss_dssp HHHHTTCCCHHHHHHH---HTTEEEECTTSCHHHHHHHHHHHHHTSB---CEEEEEGGGSSSCCCCBSEEEEECSEEEET
T ss_pred HHHHhhcccHHHHHHH---hCCEEEECCCCCHHHHHHHHHHHHCCCC---eEEEEChHHHcCCCCCccEEEEecCccccC
Confidence 22222 2357789999999999999999987554 48999999999999997655552 332
Q ss_pred ------CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 705 ------DWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 705 ------~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
+.++..+.|++|||+|.|....-.++.++...
T Consensus 1271 ~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1271 KIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred cccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 46789999999999999998777776666544
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.63 E-value=4e-16 Score=189.69 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=84.8
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEE--
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI-- 700 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VI-- 700 (1104)
.+.++|||++....++.|.+.|...|++...++|+++.++ |.+... .+|++|.+++.|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4779999999999999999999999999999999999764 333222 5899999999999996 99988
Q ss_pred --------EEC-----------CCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCHH
Q 001302 701 --------IYD-----------SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1104)
Q Consensus 701 --------i~D-----------~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1104)
.|| .+-++..++|++||++| |..-. |.|++....+
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~~ 517 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGERP 517 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCBC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchhh
Confidence 466 67778999999999999 65433 7888876443
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.63 E-value=2.2e-14 Score=192.68 Aligned_cols=321 Identities=16% Similarity=0.225 Sum_probs=189.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcC---------CCCceEEEeCc-ccHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE---------RISPHLVVAPL-STLRNWEREF 352 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~---------~~~p~LIV~P~-s~l~qW~~E~ 352 (1104)
.+|.+.|..++.-+ +..+.|.+++.+||+|||+.| ++++..+... ....+|+|+|. ++..+=.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 36899999987644 467899999999999999998 4455555432 12378999995 6666777777
Q ss_pred HHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc------ccc
Q 001302 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS------ASL 424 (1104)
Q Consensus 353 ~~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~------~~l 424 (1104)
.+.+. +++|..++|+.... .......+|+|||+|.+..-. ..+
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~-----------------------------~~~~~~~~IlVtTpEkld~llr~~~~~~~l 205 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLC-----------------------------KEEISATQIIVCTPEKWDIITRKGGERTYT 205 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSC-----------------------------CTTGGGCSEEEECHHHHHHHTTSSTTHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCC-----------------------------ccccCCCCEEEECHHHHHHHHcCCccchhh
Confidence 65442 56788888864210 001246789999999874321 122
Q ss_pred cCCcceEEEEcCcccccCcccHHHHH-H----H---hcc-cccEEEEecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 001302 425 KPIKWQCMIVDEGHRLKNKDSKLFSS-L----K---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1104)
Q Consensus 425 ~~~~w~~vIvDEaHrlkn~~s~~~~~-l----~---~l~-~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~~~~~F~~~ 495 (1104)
. ...+|||||+|.+....+..... + . ... .-..++||||- .|+.|+.. ||....
T Consensus 206 ~--~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~---wL~~~~---------- 268 (1724)
T 4f92_B 206 Q--LVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT---FLRVDP---------- 268 (1724)
T ss_dssp T--TEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH---HTTCCH----------
T ss_pred c--CcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH---HhCCCC----------
Confidence 2 35689999999886532222211 1 1 122 23579999994 34555433 222110
Q ss_pred HhccchHHHHHHHHHHhhHHHHHHhHhhHhhcCC-CcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 001302 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVM 574 (1104)
Q Consensus 496 f~~~~~~~~~~~L~~~L~~~~lRR~k~dv~~~lP-~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~~~ 574 (1104)
...+ +.+ .. ..-| |...+.+.+.-....+. +.. +
T Consensus 269 ------~~~~---------~~~---~~---~~RPvpL~~~~~~~~~~~~~~~-~~~----------------------~- 303 (1724)
T 4f92_B 269 ------AKGL---------FYF---DN---SFRPVPLEQTYVGITEKKAIKR-FQI----------------------M- 303 (1724)
T ss_dssp ------HHHE---------EEC---CG---GGCSSCEEEECCEECCCCHHHH-HHH----------------------H-
T ss_pred ------CCCe---------EEE---CC---CCccCccEEEEeccCCcchhhh-hHH----------------------H-
Confidence 0000 000 00 0011 11222222211110000 000 0
Q ss_pred HHHHHhCCccccCCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHh----h----
Q 001302 575 ELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----F---- 646 (1104)
Q Consensus 575 ~Lrk~~~hP~l~~~~~~~~~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~----~---- 646 (1104)
.. .+...+.. ...++.+|||+........++..|. .
T Consensus 304 --~~---------------------------------~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~ 347 (1724)
T 4f92_B 304 --NE---------------------------------IVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTL 347 (1724)
T ss_dssp --HH---------------------------------HHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTST
T ss_pred --HH---------------------------------HHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccch
Confidence 00 00000000 0135577888776544333322221 1
Q ss_pred -----------------------------CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCC
Q 001302 647 -----------------------------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1104)
Q Consensus 647 -----------------------------~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad 697 (1104)
....+...+|+++.++|..+.+.|.++.- .+|++|.+++.||||++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i---~vlvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 348 GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHI---QVLVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCC---CEEEECHHHHHHSCCCBSE
T ss_pred hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCC---eEEEEcchhHhhCCCCCce
Confidence 12347788999999999999999987543 4899999999999999887
Q ss_pred EEE----EECCC------CChhhHHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 698 TVI----IYDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 698 ~VI----i~D~~------wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
+|| +||+. -++..+.|++|||+|.|....-.++.+...+.
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 777 36654 47899999999999999876666666666554
No 70
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=155.23 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 608 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
.|+..|.+++... .+.++|||++....++.|...|...|+.+..++|+++..+|+.+++.|+++... +|++|.++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4888888888764 467999999999999999999999999999999999999999999999875443 79999999
Q ss_pred cccccccCCCEEEEECCC------CChhhHHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 688 GLGINLATADTVIIYDSD------WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~~------wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
++|||++.+++||+||++ +++..++|++||++|.|+. -.++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6778999999999999965 45567777654
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.61 E-value=1.5e-15 Score=186.89 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=94.8
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccCCCEEEEECC-
Q 001302 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS- 704 (1104)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~ad~VIi~D~- 704 (1104)
..|||+.....++.+...|...|+.+..++|+++.++|..+++.|++++ +.+.+|++|.+++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~-g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPN-DPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTT-SSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccC-CCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 3478888899999999999999999999999999999999999999732 233489999999999999 9999999999
Q ss_pred -------------CCChhhHHHHHHhhHhhCCC-CeEEEEEEeeC
Q 001302 705 -------------DWNPHADLQAMARAHRLGQT-NKVMIFRLITR 735 (1104)
Q Consensus 705 -------------~wNp~~~~Qa~gR~hRiGQ~-k~V~Vyrlvt~ 735 (1104)
++++..+.|+.||++|.|+. ....+|.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 78999999999999999987 45677777544
No 72
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.39 E-value=6.9e-17 Score=165.63 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra 686 (1104)
+.|+.+|.+++.. ..+.++|||++....++.|..+|...|+.+..++|+++..+|..+++.|+++.. .+|++|.+
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~---~vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV---NVLVATDV 89 (170)
Confidence 5688888888876 356799999999999999999999999999999999999999999999986543 48999999
Q ss_pred ccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 687 gg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
+++|||++.+++||+||++||+..++|++||++|.||...+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998766543
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.60 E-value=1.1e-13 Score=165.55 Aligned_cols=413 Identities=16% Similarity=0.127 Sum_probs=224.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH----HHHHHHHHHHcCC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l----~qW~~E~~~~~p~ 358 (1104)
|...+|-|+-|.--| . .|-|.-+.||.|||+++.. ..++..-....+.||+|+.-| ..|...+-.|. +
T Consensus 73 g~r~~dvQligg~~L----~--~G~iaEM~TGEGKTLva~l-p~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~L-g 144 (822)
T 3jux_A 73 GMRPFDVQVMGGIAL----H--EGKVAEMKTGEGKTLAATM-PIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFL-G 144 (822)
T ss_dssp SCCCCHHHHHHHHHH----H--TTCEEECCTTSCHHHHTHH-HHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCcHHHHHHHHHH----h--CCChhhccCCCCccHHHHH-HHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHh-C
Confidence 456778888886544 2 4559999999999997543 333333233478999999888 45999999998 7
Q ss_pred CeEEEEecCh----------h-HHHHHHHhhhcCCCCchh---------hhccccC--ccccccccccccccEEEccHHH
Q 001302 359 MNVVMYVGTS----------Q-ARNIIREYEFYFPKNPKK---------VKKKKSG--QVVSESKQDRIKFDVLLTSYEM 416 (1104)
Q Consensus 359 ~~vv~~~g~~----------~-~r~~i~~~e~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~dVvitsye~ 416 (1104)
+.|.+..... . ....+.+.--.+|..... ....... ......+.....+||.-+|-.-
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~E 224 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNE 224 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcc
Confidence 8888777621 1 111122210001111000 0000000 0111122334567999888877
Q ss_pred Hhhcc---------ccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcCCCCC
Q 001302 417 INLDS---------ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1104)
Q Consensus 417 l~~~~---------~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ll~fL~p~~~~ 487 (1104)
+..|. ..+-.-.+.++||||+..+.=. .++.-|++||.+ ... .++|..++-+-+..-.
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLID-----------eArtPLiISg~~-~~~-~~~y~~~~~~v~~l~~ 291 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLID-----------EARTPLIISGPS-KES-PSVYRRFAQIAKKFVK 291 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTT-----------GGGSCEEEECCC-CSC-HHHHHHHHHHTTSSCB
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeec-----------CCCCCceeeCCC-CCc-cHHHHHHHHHHHhcCc
Confidence 75431 1222346889999999743111 234567888844 333 3666665544433211
Q ss_pred C---------------hH--HHHHHH-h-----ccchHHHHHHHHHHhhHHHH-HHhHhhHhhcCCCcEEEEEeccCC--
Q 001302 488 S---------------LE--EFQEEF-K-----DINQEEQISRLHRMLAPHLL-RRVKKDVMKELPPKKELILRVELS-- 541 (1104)
Q Consensus 488 ~---------------~~--~F~~~f-~-----~~~~~~~~~~L~~~L~~~~l-RR~k~dv~~~lP~k~e~~v~v~ls-- 541 (1104)
+ .. ...+.+ . +......+..+...|+.+.+ .|-+.-+.. .. +.++.-+.|
T Consensus 292 ~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~---dg-~V~iVDe~TGR 367 (822)
T 3jux_A 292 DKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVM---NG-EVIIVDEFTGR 367 (822)
T ss_dssp TTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEE---TT-EEEECSSSSCS
T ss_pred CCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEE---CC-EEEEEECCCCc
Confidence 0 00 111111 1 11122333344444444332 221111110 11 111111111
Q ss_pred -----HHHHHHHHHHHHHH------------------HH----HHHhcCCchhHHHHHHHHHHHHhCCcccc-CCCCCCc
Q 001302 542 -----SKQKEYYKAILTRN------------------YQ----ILTRRGGAQISLINVVMELRKLCCHPYML-EGVEPDI 593 (1104)
Q Consensus 542 -----~~Q~~~Y~~il~~~------------------~~----~l~~~~~~~~~l~~~~~~Lrk~~~hP~l~-~~~~~~~ 593 (1104)
..+.-+.++|-.+. +. .+...++.- .....++++..+-.... +...+..
T Consensus 368 ~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa---~te~~Ef~~iY~l~vv~IPtnkp~~ 444 (822)
T 3jux_A 368 LLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTA---KTEESEFVQVYGMEVVVIPTHKPMI 444 (822)
T ss_dssp CCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSC---GGGHHHHHHHSCCCEEECCCSSCCC
T ss_pred CCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCC---chHHHHHHHHhCCeEEEECCCCCcc
Confidence 01111112221111 00 000001111 11223455554433222 1111110
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC
Q 001302 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1104)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~ 673 (1104)
. .............|...|...+......|.+||||+......+.|...|...|++...++|.....+|.-+...|..
T Consensus 445 R-~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~- 522 (822)
T 3jux_A 445 R-KDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK- 522 (822)
T ss_dssp C-EECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST-
T ss_pred e-eecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC-
Confidence 0 00000011234578999999998888889999999999999999999999999999999998544444433344432
Q ss_pred CCCceEEEeecCccccccccc--------CCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEE
Q 001302 674 NSSRFCFLLSTRAGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1104)
Q Consensus 674 ~~~~~v~Llstragg~GINL~--------~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1104)
+ .++|+|..+|.|+|+. ...+||.+|.+-++..|.|++||++|.|..-....
T Consensus 523 --g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 523 --G--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp --T--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred --C--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 2 2799999999999997 56799999999999999999999999998765443
No 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.59 E-value=8.2e-15 Score=155.77 Aligned_cols=124 Identities=16% Similarity=0.268 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.+.|+..|.+++.. ..+.++|||++.....+.|...|...|+.+..++|+++..+|+.+++.|+.+... +|++|.
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 46799999999874 4578999999999999999999999999999999999999999999999876443 799999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
++++|||++.+++||+||++|++..+.|++||++|.|+.. .++.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999999999999999999999764 455666654
No 75
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.59 E-value=6e-15 Score=185.32 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=96.1
Q ss_pred hCCeEEEEecchhHHHHHHHHHhh-----------CCCcEEEEecCCChHHHHHHHHHHccC--CCCceEEEeecCcccc
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTF-----------KKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGL 689 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~-----------~g~~~~ridG~~~~~~R~~~i~~Fn~~--~~~~~v~Llstragg~ 689 (1104)
.+.++|||+.....++.+...|.. .++.+..++|+++.++|+.+++.|... ..+...+|++|.+++.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999888888864 688999999999999999999999611 1345668999999999
Q ss_pred cccccCCCEEEEECC------------------CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCCH
Q 001302 690 GINLATADTVIIYDS------------------DWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1104)
Q Consensus 690 GINL~~ad~VIi~D~------------------~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1104)
|||++.+++||.++. +.+...+.|+.||++|. ++-.+|+|+++...
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999655 78999999999999998 45678888876544
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.57 E-value=1.9e-14 Score=151.98 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-----CCCceEEEeCc-ccHHHHHHHHHHHcC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRNWEREFATWAP 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-----~~~p~LIV~P~-s~l~qW~~E~~~~~p 357 (1104)
..++|||.+++..+ ..++++|+..+||+|||++++..+...... ....+|||||. ++..||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLA----LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHH----cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 36999999999887 457889999999999999866555444321 23479999997 777999999999998
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEc
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvD 435 (1104)
.+++..++|........... ...++|+|+|++.+..... .+..-.+++||+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEAL--------------------------LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred cceEEEEECCCChHHHHHHh--------------------------hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 88888888865433222111 1257899999998865322 2333467899999
Q ss_pred CcccccCc--ccHHHHHHHhcc-cccEEEEecCC
Q 001302 436 EGHRLKNK--DSKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 436 EaHrlkn~--~s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
|||++.+. ...+...+..+. ....+++||||
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred ChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 99998543 233444444444 34579999998
No 77
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=2.8e-14 Score=152.36 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=112.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-C-CceEEEeCc-ccHHHHHHHHHHHc---CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I-SPHLVVAPL-STLRNWEREFATWA---PQ 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-~-~p~LIV~P~-s~l~qW~~E~~~~~---p~ 358 (1104)
.++|||.+++..+ ..+.++|+..+||+|||++++..+....... . .++|||||. ++..||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 4999999999877 3567899999999999999877666655432 2 389999996 77789999999986 47
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDE 436 (1104)
+++..++|........... .....+|+|+|++.+.... ..+..-.+++||+||
T Consensus 112 ~~v~~~~g~~~~~~~~~~~-------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CCEEEESCCSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred ceEEEEeCCCChHHHHHHH-------------------------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 8888888876543322221 0124689999999986532 223334678999999
Q ss_pred cccccCcc---cHHHHHHHhcc-cccEEEEecCCCCCCHHH
Q 001302 437 GHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTPLQNNLDE 473 (1104)
Q Consensus 437 aHrlkn~~---s~~~~~l~~l~-~~~rllLTgTPlqN~~~E 473 (1104)
||++.... ..+...+..+. ....+++||||- +++.+
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~ 206 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS-KEIRP 206 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCC-TTTHH
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecC-HHHHH
Confidence 99985421 22333333343 346799999984 34444
No 78
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.54 E-value=9e-15 Score=155.22 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=90.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-----CCCceEEEeCc-ccHHH-HHHHHHHH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-----RISPHLVVAPL-STLRN-WEREFATW 355 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-----~~~p~LIV~P~-s~l~q-W~~E~~~~ 355 (1104)
+.+|+|||.+++..+. .+.++|+..+||+|||++++..+..+... ..+++|||||. .++.| |.+++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3579999999998773 56889999999999999998877765432 24599999997 55678 99999998
Q ss_pred cC-CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc--------ccC
Q 001302 356 AP-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--------LKP 426 (1104)
Q Consensus 356 ~p-~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~--------l~~ 426 (1104)
.+ .+.+..++|+......... .....+|+|+||+.+...... +..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~--------------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPE--------------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHH--------------------------HHHHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred hccCceEEEEeCCcccchhHHh--------------------------hccCCCEEEECHHHHHHHHhccCcccccccch
Confidence 75 4677777776432211100 012578999999999754332 233
Q ss_pred CcceEEEEcCcccccCc
Q 001302 427 IKWQCMIVDEGHRLKNK 443 (1104)
Q Consensus 427 ~~w~~vIvDEaHrlkn~ 443 (1104)
..|++|||||||++...
T Consensus 161 ~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKE 177 (216)
T ss_dssp GGCSEEEETTC------
T ss_pred hcccEEEEECchhhccC
Confidence 46899999999999643
No 79
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.52 E-value=2.3e-12 Score=159.55 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 608 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
+++..|...|......|.++|||+....+.+.|.++|...|+++..++|.++..+|..+++.|..+.. .+|++|.++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~---~VLvaT~~l 499 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHY---DCLVGINLL 499 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSC---SEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCc---eEEEccChh
Confidence 45555656666666789999999999999999999999999999999999999999999999976443 489999999
Q ss_pred cccccccCCCEEEEECC-----CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 688 GLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~-----~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
+.|||++.+++||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8899999999999999863 34555666654
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.52 E-value=9.7e-14 Score=149.38 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHH-HHHHHhcCC-CCceEEEeCc-ccHHHHHHHHHHHc---CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-ISPHLVVAPL-STLRNWEREFATWA---PQ 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~-~l~~l~~~~-~~p~LIV~P~-s~l~qW~~E~~~~~---p~ 358 (1104)
.++|||.+++..+ ..+.++|+..+||+|||++++. ++..+.... ..++|||||. .+..||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 5999999999876 4578999999999999998544 445444333 3489999996 77799999999986 46
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDE 436 (1104)
+++.+++|+......... ....+|+|+|++.+.... ..+..-.+++||+||
T Consensus 122 ~~~~~~~g~~~~~~~~~~---------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR---------------------------LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp CCEEEECTTSCHHHHHHH---------------------------TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred ceEEEEeCCCCHHHHHHh---------------------------ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 788888887554332211 125789999999986532 222334678999999
Q ss_pred cccccCcc---cHHHHHHHhcc-cccEEEEecCC
Q 001302 437 GHRLKNKD---SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 437 aHrlkn~~---s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
||++.+.+ ..+...+..+. ....+++|||+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 99985432 33444455554 44579999996
No 81
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=149.15 Aligned_cols=152 Identities=13% Similarity=0.192 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcC-----CCCceEEEeCc-ccHHHHHHHHHHHc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~-----~~~p~LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
..++|||.+++.++ ..++++|+..+||+|||++++..+. .+... ....+|||+|. .+..||.+++.++.
T Consensus 46 ~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 36899999999887 4678899999999999998765443 34331 22379999996 77789999999998
Q ss_pred CC--CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceE
Q 001302 357 PQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQC 431 (1104)
Q Consensus 357 p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w~~ 431 (1104)
+. +.+..++|.......... ....+|+|+|++.+..... .+....+++
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~---------------------------~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER---------------------------INNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH---------------------------HTTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCCCeeEEEEECCCCHHHHHHh---------------------------CCCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 54 678888887554322211 1357899999999865422 233346889
Q ss_pred EEEcCcccccCcc--cHHHHHHHhccc-ccEEEEecCC
Q 001302 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTP 466 (1104)
Q Consensus 432 vIvDEaHrlkn~~--s~~~~~l~~l~~-~~rllLTgTP 466 (1104)
||+||||++.+.. ..+...+..+.. ...+++|||+
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 9999999986543 344555555543 4579999997
No 82
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.50 E-value=9.4e-14 Score=154.92 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=107.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecC
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstr 685 (1104)
.+.|+..|.+++... .+.++|||++.....+.|...|...|+.+..++|.++..+|+.+++.|+.+... +|++|.
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 456899999998764 378999999999999999999999999999999999999999999999875543 899999
Q ss_pred cccccccccCCCEEEEECCCCChhhHHHHHHhhHhhCCCCeEEEEEEeeCC
Q 001302 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1104)
Q Consensus 686 agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1104)
++++|||++.+++||+||++||+..+.|++||++|.|+.. .+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 9999999999999999999999999999999999999764 555667665
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.49 E-value=2.4e-13 Score=143.35 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=108.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CC-CCceEEEeCc-ccHHHHHHHHHHHcC---C
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFATWAP---Q 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~-s~l~qW~~E~~~~~p---~ 358 (1104)
+++|||.+++..+ ..+.++++..+||+|||+.++..+..... .. ..++|||||. .+..||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHH----ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 6999999999876 45788999999999999887655544433 22 2379999996 666899999998863 6
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
..+..++|........... ....+|+|+|++.+..... .+..-.+++||+||
T Consensus 101 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL--------------------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred ceEEEEeCCccHHHHHHhc--------------------------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 7888888876554332221 1357899999999854322 22233678999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEEecCC
Q 001302 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
||++.... ..+...+..+. ....+++|||+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 99986533 23333444444 45689999998
No 84
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.49 E-value=1.4e-13 Score=146.95 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=110.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-CC-CCceEEEeCc-ccHHHHHHHHHHHcC---
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFATWAP--- 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~~-~~p~LIV~P~-s~l~qW~~E~~~~~p--- 357 (1104)
.+++|||.+++..+. .+.++|+..+||+|||++++..+..... .. ...+|||||. .+..||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 358999999998773 4688999999999999986555444433 32 2489999996 677899999998874
Q ss_pred ---CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEE
Q 001302 358 ---QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1104)
Q Consensus 358 ---~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~v 432 (1104)
...+..+.|......... ......+|+|+|++.+..... .+....+++|
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~--------------------------~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE--------------------------KLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC--------------------------CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred cccceEEEEEeCCCCHHHHHH--------------------------HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 467777777654332100 011357899999998865322 2233467899
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHH
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDEL 474 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTPlqN~~~EL 474 (1104)
|+||||++.+.. ..+...+..+. ....+++|||+ .+.+.++
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 999999986433 33444555554 34579999997 4444443
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.48 E-value=4.7e-13 Score=146.16 Aligned_cols=167 Identities=14% Similarity=0.230 Sum_probs=113.2
Q ss_pred ccccccCCCCCCCC------CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHH-HhcCC----------
Q 001302 270 EFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGER---------- 332 (1104)
Q Consensus 270 ~~~~~~~~P~~~~~------~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~-l~~~~---------- 332 (1104)
.|..+.-.|..... ..++|||.+++..+ ..+.++|+..+||+|||+.++..+.. +....
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i----~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 45555555544322 36999999999877 45788999999999999987655443 33221
Q ss_pred CCceEEEeCc-ccHHHHHHHHHHHcC--CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccE
Q 001302 333 ISPHLVVAPL-STLRNWEREFATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDV 409 (1104)
Q Consensus 333 ~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV 409 (1104)
...+|||||. .+..||.+++.++.. .+.+..++|........... ....+|
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I 153 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV--------------------------QMGCHL 153 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--------------------------SSCCSE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--------------------------CCCCCE
Confidence 1379999996 777999999999874 36677777765443322221 135789
Q ss_pred EEccHHHHhhccc--cccCCcceEEEEcCcccccCc--ccHHHHHHHhcc-----cccEEEEecCC
Q 001302 410 LLTSYEMINLDSA--SLKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYS-----TRHRVLLTGTP 466 (1104)
Q Consensus 410 vitsye~l~~~~~--~l~~~~w~~vIvDEaHrlkn~--~s~~~~~l~~l~-----~~~rllLTgTP 466 (1104)
+|+|++.+..... .+..-.+++||+||||++.+. ...+...+..+. ....+++||||
T Consensus 154 vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 154 LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 9999999865322 222335689999999998643 233444444322 33589999997
No 86
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.47 E-value=2.9e-13 Score=144.79 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHH-HHHHHHHhcCC-CCceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqa-i~~l~~l~~~~-~~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
..++|||.+++..+ ..+.++|+..+||+|||+++ +.++..+.... ..++|||+|. .+..||.+++.++.+ +
T Consensus 35 ~~~~~~Q~~~i~~~----~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 36999999999876 45688999999999999985 44455544333 3489999996 667899999999875 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEEEEcC
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~vIvDE 436 (1104)
+.+..++|......... .....+|+|+|++.+..... .+..-.+++||+||
T Consensus 111 ~~~~~~~g~~~~~~~~~---------------------------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE---------------------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CCEEEECC-------------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred ceEEEEeCCcchHHHHh---------------------------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 67777777654322110 11237899999999864322 22334578999999
Q ss_pred cccccCcc--cHHHHHHHhcc-cccEEEEecCC
Q 001302 437 GHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 437 aHrlkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
||++.+.+ ..+...+..+. ....++||||+
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 99986432 23444444443 34579999998
No 87
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.47 E-value=9.8e-15 Score=120.83 Aligned_cols=57 Identities=28% Similarity=0.639 Sum_probs=51.1
Q ss_pred hccCCCccchhhhhhhcc-CCccceeeeeeeeeccccccccccC-CccccHHHHHHHHH
Q 001302 185 VAIRPEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIK 241 (1104)
Q Consensus 185 ~~i~~~~~~verIi~~r~-~~~~~~yLVKWkgL~Y~~~tWe~~~-~~~~~~~~i~~~~~ 241 (1104)
++|+|+|+.|||||++|. .++..+|||||+||||++||||.++ +++.++.+|++|.+
T Consensus 5 ~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 5 SSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp SSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 468999999999999996 4678999999999999999999888 56788999999975
No 88
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.46 E-value=3.1e-13 Score=147.31 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=109.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcCCC-CceEEEeCc-ccHHHHHHHHHHHcC--C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI-SPHLVVAPL-STLRNWEREFATWAP--Q 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~~~-~p~LIV~P~-s~l~qW~~E~~~~~p--~ 358 (1104)
..++|||.+++..+ ..++++|+..+||+|||++++..+. .+..... ..+|||+|. .+..||.+++.++.. +
T Consensus 64 ~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLA----LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 36999999999877 4678899999999999998655444 4444433 379999996 667899999999864 5
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceEEEEc
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIVD 435 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w~~vIvD 435 (1104)
+.+..++|........... ....+|+|+|++.+..... .+..-.+++||+|
T Consensus 140 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLAL--------------------------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp CCEEEECTTSCHHHHHHHH--------------------------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred eeEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 7788888765543322111 1357899999999865432 2233457899999
Q ss_pred CcccccCcc--cHHHHHHHhcc-cccEEEEecCC
Q 001302 436 EGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 436 EaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
|||++.+.. ..+...+..+. ....+++|||+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 999986542 23444445554 45679999998
No 89
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.44 E-value=5.9e-13 Score=143.95 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=103.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc-C-CCCceEEEeCc-ccHHHHHHHHHHHcC--CC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-E-RISPHLVVAPL-STLRNWEREFATWAP--QM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~-~-~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~ 359 (1104)
.++|||.+++..+ ..+.++|+..+||+|||++++..+..... . ...++|||+|. .+..||.+++.++.. +.
T Consensus 52 ~~~~~Q~~ai~~i----~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPC----IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 5999999999876 35688999999999999986555544433 2 23489999996 677899999999975 45
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceEEEEcCc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~vIvDEa 437 (1104)
.+..+.|........... ....++|+|+|++.+.... ..+..-.+++||+|||
T Consensus 128 ~~~~~~g~~~~~~~~~~l-------------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKL-------------------------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp CEEEECC--------------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred eEEEEECCCchHHHHHHH-------------------------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 666677665433211110 1124789999998876432 2233345789999999
Q ss_pred ccccC--cccHHHHHHHhccc-ccEEEEecCC
Q 001302 438 HRLKN--KDSKLFSSLKQYST-RHRVLLTGTP 466 (1104)
Q Consensus 438 Hrlkn--~~s~~~~~l~~l~~-~~rllLTgTP 466 (1104)
|++.. ....+...+..+.. ...+++|||+
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 99843 33445555555543 4568999998
No 90
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.41 E-value=1.5e-11 Score=152.17 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcc
Q 001302 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1104)
Q Consensus 608 ~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstrag 687 (1104)
+++..|...|......|.++|||+....+.+.|.++|...|+++..++|.++..+|..+++.|..+.. .+|++|.++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~---~VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKY---DVLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSC---SEEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCe---EEEEecchh
Confidence 45555555566666678999999999999999999999999999999999999999999999976443 389999999
Q ss_pred cccccccCCCEEEEECC-----CCChhhHHHHHHhhHhhCCCCeEEEEEEeeCCC
Q 001302 688 GLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1104)
Q Consensus 688 g~GINL~~ad~VIi~D~-----~wNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1104)
+.|||++.+++||++|. ++++..++|++||++|.+ .-.++.|++..+
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 99999999999999998 889999999999999962 344556777664
No 91
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=136.55 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHH-HhcC-------CCCceEEEeCc-ccHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGE-------RISPHLVVAPL-STLRNWEREFAT 354 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~-l~~~-------~~~p~LIV~P~-s~l~qW~~E~~~ 354 (1104)
.+++|+|.+++..+ ..+.++|+..+||+|||+.++..+.. +... ....+|||+|. .+..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 37999999999876 46789999999999999987554443 3221 23378999996 566899999999
Q ss_pred Hc-CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcc--ccccCCcceE
Q 001302 355 WA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1104)
Q Consensus 355 ~~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~--~~l~~~~w~~ 431 (1104)
+. +++.+..++|........... ...++|+|+|++.+.... ..+.--.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDI--------------------------SKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp HCCTTCCEEEECC------CHHHH--------------------------HSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred hcccCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 85 567788877765433211111 134789999999986532 1222335789
Q ss_pred EEEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCC
Q 001302 432 MIVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 432 vIvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
|||||||++.+.. ..+...+..+. ....+++|||.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 9999999986542 33444455554 34568999996
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.36 E-value=4.2e-13 Score=118.17 Aligned_cols=53 Identities=26% Similarity=0.844 Sum_probs=48.7
Q ss_pred ccccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
.+.+++.|.+|+.+|+||+||.|+++||+.||.||+..+|.|+|+|+.|....
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 35567899999999999999999999999999999999999999999998643
No 93
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=115.99 Aligned_cols=55 Identities=35% Similarity=0.649 Sum_probs=47.9
Q ss_pred ccCCCccchhhhhhhcc----CCc--cceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 186 AIRPEWTTVDRILACRG----EDD--EKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 186 ~i~~~~~~verIi~~r~----~~~--~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
.++|+|.+|||||++|. .+| ..+|||||+||||++||||.+.++ .+.+|+.|..+
T Consensus 6 ~~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l--~~~~I~~f~~r 66 (68)
T 2epb_A 6 SGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV--DPAKVKEFESL 66 (68)
T ss_dssp SSCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS--CHHHHHHHHHH
T ss_pred cCCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc--CHHHHHHHHHh
Confidence 48999999999999883 234 689999999999999999999887 47999999875
No 94
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=138.90 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHH-HHhcC-CCC-ceEEEeCc-ccHHHHHHHHHHHcCC--
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGE-RIS-PHLVVAPL-STLRNWEREFATWAPQ-- 358 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~-~l~~~-~~~-p~LIV~P~-s~l~qW~~E~~~~~p~-- 358 (1104)
.++|||.+++..+ ..+.++|+..+||+|||+.++..+. .+... ..+ .+|||+|. .+..||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVM----LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5999999999776 4578899999999999998655444 44332 223 79999996 6778999999999753
Q ss_pred CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc----cccCCcceEEEE
Q 001302 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIV 434 (1104)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~----~l~~~~w~~vIv 434 (1104)
+.+..++|....... . .......++|+|+|++.+..... .+.--.+.+||+
T Consensus 127 ~~~~~~~~~~~~~~~---~----------------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKK---F----------------------GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCEECCCHHHHHHTT---T----------------------STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred ceEEEEecCccHHHH---h----------------------hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 455555544322110 0 00012467999999999865322 223335789999
Q ss_pred cCcccccCcc-----cHHHHHHHhcc--cccEEEEecCC
Q 001302 435 DEGHRLKNKD-----SKLFSSLKQYS--TRHRVLLTGTP 466 (1104)
Q Consensus 435 DEaHrlkn~~-----s~~~~~l~~l~--~~~rllLTgTP 466 (1104)
||||++.... ..+...+..+. ....++||||+
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 9999986432 22333333332 34679999998
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.32 E-value=1.1e-12 Score=109.07 Aligned_cols=52 Identities=42% Similarity=1.103 Sum_probs=48.1
Q ss_pred cccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
+.++.+|.+|+.+++|+.||+|+++||+.||.||+..+|.++|+|+.|....
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4567889999999999999999999999999999999999999999998643
No 96
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.29 E-value=2e-11 Score=132.28 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHH-HHHHhcC------CCCceEEEeCc-ccHHHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE------RISPHLVVAPL-STLRNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~-l~~l~~~------~~~p~LIV~P~-s~l~qW~~E~~~~~ 356 (1104)
.++|+|.+++..+ ..+.++|+..++|+|||+.++.. +..+... ....+|||+|. .+..||.+.+.++.
T Consensus 51 ~~~~~Q~~~i~~~----~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVA----LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHH----HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 5999999999776 35689999999999999986544 4444432 12368999995 66689999888875
Q ss_pred --CCCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc--cccCCcceEE
Q 001302 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1104)
Q Consensus 357 --p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~--~l~~~~w~~v 432 (1104)
.++.+..++|........... ....+|+|+|++.+..... .+.--.+.+|
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDL--------------------------ERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred hhcCceEEEEECCCChHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 357788888765544332221 1247899999998864322 2223356899
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCC
Q 001302 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTP 466 (1104)
Q Consensus 433 IvDEaHrlkn~~--s~~~~~l~~l~-~~~rllLTgTP 466 (1104)
|+||||++-... ..+...+..+. ....+++|||+
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 999999986532 23334444443 34578999996
No 97
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=136.26 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH-HHHhcC-----CCCceEEEeCc-ccHHHHHHHHHHHcC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGE-----RISPHLVVAPL-STLRNWEREFATWAP 357 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l-~~l~~~-----~~~p~LIV~P~-s~l~qW~~E~~~~~p 357 (1104)
.++|+|.+++..+. .++++|+..++|+|||+.++..+ ..+... ....+|||+|. .+..||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999997663 45789999999999999865544 444331 23479999996 677899999999875
Q ss_pred C--CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhcccc---ccCCcceEE
Q 001302 358 Q--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCM 432 (1104)
Q Consensus 358 ~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~---l~~~~w~~v 432 (1104)
. ..+..+.|........... ....+|+|+|++.+...... +.--.+.+|
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL--------------------------GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred hcCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 3 5666677765443322221 12478999999988643221 222356899
Q ss_pred EEcCcccccCc--ccHHHHHHHhccc-ccEEEEecCC
Q 001302 433 IVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (1104)
Q Consensus 433 IvDEaHrlkn~--~s~~~~~l~~l~~-~~rllLTgTP 466 (1104)
||||||++-.. ...+...+..+.. ...+++|||+
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 99999998653 2334444444543 4579999997
No 98
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=108.96 Aligned_cols=50 Identities=28% Similarity=0.795 Sum_probs=46.1
Q ss_pred ccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
.+...|.+|+++++||+||.|+++||++||.|+|..+|.++|+|+.|...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34567999999999999999999999999999999999999999999853
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=99.27 E-value=8.9e-12 Score=133.70 Aligned_cols=132 Identities=19% Similarity=0.236 Sum_probs=99.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhc--hhccCCCHHHHHHHHHHHHHhhhhcCCCCccc-----c-----------
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITEDITDSPTF-----S----------- 1028 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~--~~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~-----~----------- 1028 (1104)
-+|+..+.|+|++++.|||.+...|+.|+ ++|+.|+.++|++++..++..|.+.+.+.+.. .
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~av~e~~~~~~~~~~~~E~~a~e~~~ 83 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRA 83 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Confidence 47999999999999999999887888897 57889999999999999999997655432111 0
Q ss_pred -------------CC-----------------CCCCc---cchhHHHHHHHHHHHHHHHHHh-hcCCCCCCCcccccccc
Q 001302 1029 -------------DG-----------------VPKEG---LRIQDVLVRIAVLLLIRDKVKF-LSQKPGTPLFTDDIYLR 1074 (1104)
Q Consensus 1029 -------------~~-----------------i~k~~---~k~~~~~~ri~~~~ll~~kv~~-~~~~p~~~~~~~~~~~~ 1074 (1104)
.+ +.=+| +..+.++.|+.-|.+|++.|.. |..+|. .|. +...
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~~akkk~kkavlf~~~gVk~vNAe~ll~r~~eL~~L~~~i~~~~~~d~~--~f~--lp~~ 159 (270)
T 2xb0_X 84 KLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPL--KFS--LGNN 159 (270)
T ss_dssp HHHHTSSCTTSCCSSCHHHHHHHHHTCCCCCEECCSSCCCEEHHHHHHHHHHHHHHHHHHHHHCSSCGG--GCC--CTTC
T ss_pred hhcccccccccccccCcchhhhhhhccccceEEEecCcccccHHHHHhhHHHHHHHHHHHhhccccccc--eee--ccCc
Confidence 00 11123 4577899999999999999984 553332 111 1122
Q ss_pred --cCCCCCCcccChhhhHHHHHHhhhcccc
Q 001302 1075 --YPGLRGGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1075 --~~~~~~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
.+..+++|.|+.+||..||+|||+|||-
T Consensus 160 ~~~~~~~W~c~W~~~dD~~LLvGIykyGyG 189 (270)
T 2xb0_X 160 TPKPVQNWSSNWTKEEDEKLLIGVFKYGYG 189 (270)
T ss_dssp CCCCCTTSSSCCCHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCCCCCcChHHHHHHHHHHHHHcCC
Confidence 3356688999999999999999999994
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.25 E-value=8.8e-13 Score=109.45 Aligned_cols=51 Identities=45% Similarity=1.064 Sum_probs=47.2
Q ss_pred cccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
+.++..|.+|+.+|+|+.||.|+++||+.||.||+..+|.+.|+|+.|...
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 346788999999999999999999999999999999999999999999754
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=105.25 Aligned_cols=50 Identities=46% Similarity=1.119 Sum_probs=46.6
Q ss_pred cccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+.++.+|.+|+.+++|+.||.|+++||+.||.||+..+|.++|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678899999999999999999999999999999999999999999964
No 102
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.24 E-value=1.3e-10 Score=141.85 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHH-HHHhcCCCCceEEEeCcccH----HHHHHHHHHHcC
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPLSTL----RNWEREFATWAP 357 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l-~~l~~~~~~p~LIV~P~s~l----~qW~~E~~~~~p 357 (1104)
|..++|-|+.|+--| ..|. |....||.|||+++...+ ..... ...++||+|+.-| .+|...+-+++
T Consensus 77 G~~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 456788999997655 3444 889999999999764433 22222 2379999998877 34888887777
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHh----hcc-----ccccCC-
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN----LDS-----ASLKPI- 427 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~----~~~-----~~l~~~- 427 (1104)
++++.++.|......... ....||++.|...+. .+. ..+..-
T Consensus 148 GLsv~~i~Gg~~~~~r~~----------------------------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~ 199 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK----------------------------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRH 199 (997)
T ss_dssp TCCEEECCTTCCHHHHHH----------------------------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCS
T ss_pred CCeEEEEeCCCCHHHHHH----------------------------HcCCCEEEECchhhhhHHHHHhhhcchhhccccc
Confidence 788888877654321111 134789999998883 221 112222
Q ss_pred --cceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHH
Q 001302 428 --KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1104)
Q Consensus 428 --~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~ 476 (1104)
...++||||+|++--.. ...-|.+|| |.+.. ..+|.
T Consensus 200 d~~l~~lIIDEaDsmLiDe-----------artPLIISg-p~~~~-~~lY~ 237 (997)
T 2ipc_A 200 DHPLHYAIIDEVDSILIDE-----------ARTPLIISG-PAEKA-TDLYY 237 (997)
T ss_dssp SSSSCEEEETTHHHHTTSS-----------TTSCEEEEE-SCSSC-HHHHH
T ss_pred CCCcceEEEechHHHHHhC-----------CCCCeeeeC-CCccc-hHHHH
Confidence 56799999999653221 223389999 87766 44443
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.23 E-value=3e-12 Score=108.27 Aligned_cols=50 Identities=42% Similarity=1.156 Sum_probs=46.9
Q ss_pred cccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+.++..|.+|+.+|+|+.||.|+++||+.||.||+..+|.++|+|+.|..
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45678899999999999999999999999999999999999999999975
No 104
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.1e-12 Score=105.48 Aligned_cols=50 Identities=38% Similarity=1.043 Sum_probs=46.3
Q ss_pred cccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+.++.+|.+|+.+++|+.||.|+++||+.||.||+..+|.++|+|+.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34567899999999999999999999999999999999999999999975
No 105
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.19 E-value=8.4e-10 Score=133.71 Aligned_cols=91 Identities=9% Similarity=0.158 Sum_probs=54.3
Q ss_pred HHHHHHHHHH-HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCccccc
Q 001302 612 LLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1104)
Q Consensus 612 ~L~~lL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~G 690 (1104)
.+...|..+. ..+.++|||......++.+.+.|.. ++ ..+.|.. ..|..+++.|..+ ..+.|.+.|....+|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~--~~il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG--KYLVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS--CCEEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC--CeEEEEEecCceecc
Confidence 3444444443 3467899999999999999888864 33 3445543 4688999999873 233344588999999
Q ss_pred ccccC----CCEEEEECCCCChh
Q 001302 691 INLAT----ADTVIIYDSDWNPH 709 (1104)
Q Consensus 691 INL~~----ad~VIi~D~~wNp~ 709 (1104)
||++. +..||++..|+-+.
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp --------CEEEEEEESCCCCCT
T ss_pred eecCCCcccccEEEEECCCCCCC
Confidence 99996 78899999886433
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.09 E-value=3.7e-11 Score=126.49 Aligned_cols=53 Identities=34% Similarity=0.822 Sum_probs=48.7
Q ss_pred ccccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
++.++++|.+|+++|+|++||+|+++||+.||.||+..+|.|+|+|+.|....
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35567889999999999999999999999999999999999999999998643
No 107
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.09 E-value=5.3e-10 Score=125.10 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=100.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHH-HHHHHHhcCCCC-ceEEEeCc-ccHHHHHHHHHHHc---C
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai-~~l~~l~~~~~~-p~LIV~P~-s~l~qW~~E~~~~~---p 357 (1104)
..++|+|..++..+.. ..+.++|+..++|+|||+..+ .++..+.....+ .+|||+|. .+..|+.+.+..+. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3689999999876621 124889999999999999865 444444443333 69999996 56688888888775 5
Q ss_pred CCeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccc---cccCCcceEEEE
Q 001302 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKWQCMIV 434 (1104)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~---~l~~~~w~~vIv 434 (1104)
.+.+..+.|...... ......+|+|+|++.+..... .+.--...+|||
T Consensus 191 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER-----------------------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp TCCEEEESTTCCCCT-----------------------------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CcEEEEEeCCccHhh-----------------------------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 677777766532110 012456899999999865432 222235679999
Q ss_pred cCcccccCcc---cHHHHHHHhccc-ccEEEEecCC
Q 001302 435 DEGHRLKNKD---SKLFSSLKQYST-RHRVLLTGTP 466 (1104)
Q Consensus 435 DEaHrlkn~~---s~~~~~l~~l~~-~~rllLTgTP 466 (1104)
||||++-... ......+..+.. ...+++|||+
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 9999986422 222223333332 4578999998
No 108
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.09 E-value=3.5e-11 Score=96.42 Aligned_cols=45 Identities=40% Similarity=1.078 Sum_probs=41.6
Q ss_pred ccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 53 SCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 53 ~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
.|.+|+.++ +|+.||.|+++||+.||.|++..+|.++|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 589999765 599999999999999999999999999999999975
No 109
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.08 E-value=5.4e-11 Score=122.93 Aligned_cols=51 Identities=33% Similarity=0.860 Sum_probs=47.5
Q ss_pred ccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
.++++|.+|+++|+|++||+|+++||+.||.|++..+|.|.|+|+.|....
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 456889999999999999999999999999999999999999999999643
No 110
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=5.3e-11 Score=107.38 Aligned_cols=50 Identities=42% Similarity=1.040 Sum_probs=45.2
Q ss_pred cccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+...|.+|+.+++ ||.||.|+++||+.||.|||..+|.++|+|+.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345678999998775 99999999999999999999999999999999974
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.01 E-value=3.6e-11 Score=107.62 Aligned_cols=53 Identities=25% Similarity=0.747 Sum_probs=45.7
Q ss_pred cccccccccCC-----CCeeecCCCCCccccCcCCCCCCC----CCCCCCccCcCCCCCCcc
Q 001302 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDI 102 (1104)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~~~i 102 (1104)
...+|.+|+.+ +.||+||.|+++||+.||.|||.. +|.+.|+|+.|......+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35789999977 569999999999999999999985 899999999998654433
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=119.16 Aligned_cols=49 Identities=27% Similarity=0.863 Sum_probs=46.1
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
++.|.+|+.+|+|++||+|+++||+.||.|++..+|.|+|+|+.|....
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999999999999999999999999999999999999999998653
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=98.87 Aligned_cols=49 Identities=41% Similarity=1.009 Sum_probs=43.8
Q ss_pred ccccccccccC---CCCeeecCCCCCccccCcCCCCCCCCCCC-CCccCcCCC
Q 001302 49 AKDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 97 (1104)
..+..|.+|+. ++.||.||.|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 24 C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 24 CHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34458999995 56799999999999999999999999999 999999974
No 114
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.96 E-value=1.4e-10 Score=98.35 Aligned_cols=51 Identities=27% Similarity=0.797 Sum_probs=44.6
Q ss_pred cccccccccccCC-----CCeeecCCCCCccccCcCCCCCCC--C-CCCCCccCcCCCC
Q 001302 48 DAKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKA--P-PSGSWRCPECVSP 98 (1104)
Q Consensus 48 ~~~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~l~~--~-p~~~W~C~~C~~~ 98 (1104)
+.++..|.+|+.+ +.||.||.|+++||+.||.||+.. + |.+.|+|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456889999987 679999999999999999999986 3 8999999999753
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.95 E-value=3.2e-10 Score=96.63 Aligned_cols=46 Identities=43% Similarity=1.117 Sum_probs=41.8
Q ss_pred cccccccC---CCCeeecCCCCCccccCcCCCCCCCCCCC-CCccCcCCC
Q 001302 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (1104)
Q Consensus 52 ~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 97 (1104)
-.|.+|+. ++.||.||+|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 19 C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 19 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TSBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 36889985 56799999999999999999999999999 999999985
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=95.00 Aligned_cols=47 Identities=43% Similarity=1.063 Sum_probs=41.4
Q ss_pred ccccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCC-CccCcCCC
Q 001302 51 DDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGS-WRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~l~~~p~~~-W~C~~C~~ 97 (1104)
.-.|.+|+..+ .||.||.|+++||+.||.|||..+|.++ |+|+.|.+
T Consensus 26 ~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 26 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCcCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 33688888764 4999999999999999999999999999 99999975
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.86 E-value=5.2e-10 Score=99.92 Aligned_cols=47 Identities=34% Similarity=0.914 Sum_probs=42.2
Q ss_pred ccccccccccCCC-----CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
.++..|.+|+.++ .||+||.|+++||+.|+.|++ +|.|+|+|+.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 3457899999887 699999999999999999985 8999999999985
No 118
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.86 E-value=4.8e-10 Score=95.59 Aligned_cols=48 Identities=33% Similarity=0.868 Sum_probs=42.2
Q ss_pred cccccccccccCCC-----CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 48 DAKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+...|.+|+.++ .||.||.|+++||+.|+.|+. +|.|+|+|+.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 34567899999875 699999999999999999884 8999999999974
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=113.69 Aligned_cols=49 Identities=41% Similarity=1.051 Sum_probs=40.3
Q ss_pred ccccccccccC---CCCeeecCCCCCccccCcCCCCCCCCCCC-CCccCcCCC
Q 001302 49 AKDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~ 97 (1104)
+....|.+|+. ++.|++||+|+++||+.||.|||..+|.| +|+|+.|..
T Consensus 172 C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CTTTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred cCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 34557999997 46799999999999999999999999999 999999975
No 120
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.83 E-value=1.5e-08 Score=124.32 Aligned_cols=84 Identities=25% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHc--CCCeE
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMNV 361 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~--p~~~v 361 (1104)
++||+|.+.+.-+......++++|+...||+|||+..+..+.........+++|++|+ ++..|+.+++.++. ..+++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 5799999998877777788999999999999999987654443332223589999996 56688999988764 36777
Q ss_pred EEEecCh
Q 001302 362 VMYVGTS 368 (1104)
Q Consensus 362 v~~~g~~ 368 (1104)
+++.|..
T Consensus 83 ~~l~gr~ 89 (620)
T 4a15_A 83 IPMQGRV 89 (620)
T ss_dssp EECCCHH
T ss_pred EEEECCC
Confidence 7777644
No 121
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.80 E-value=8.1e-10 Score=106.61 Aligned_cols=51 Identities=33% Similarity=0.799 Sum_probs=46.5
Q ss_pred ccccccccccccCCCCeeecCCCCCccccCcCCCCCCC-------CCCCCCccCcCCC
Q 001302 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-------PPSGSWRCPECVS 97 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~-------~p~~~W~C~~C~~ 97 (1104)
++.++++|.+|+++|+|++||+|+++||..||.|++.. .|.++|.|+.|..
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46778999999999999999999999999999999862 5899999999985
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.76 E-value=5.1e-09 Score=96.36 Aligned_cols=67 Identities=34% Similarity=0.739 Sum_probs=53.0
Q ss_pred ccccccccccccCCCCeeecC--CCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccccccccccCcC
Q 001302 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekil~wr~~p~~~ 115 (1104)
...++++|.+|+++|+||.|| .|+++||+.||. |..+|.|+|+||.|....-.....+.+..-|.+.
T Consensus 11 ~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sf 79 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSF 79 (107)
T ss_dssp CCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCEE
T ss_pred cCCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcch
Confidence 345678899999999999999 899999999995 8999999999999986543333335555566543
No 123
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.69 E-value=8.1e-09 Score=97.17 Aligned_cols=48 Identities=33% Similarity=0.958 Sum_probs=43.0
Q ss_pred cccccccccCCC----CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~~----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+..+|.+|+.++ .|+.||.|+++||+.||.|||..+|.++|+|+.|..
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 445799998753 699999999999999999999999999999999974
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.68 E-value=2.6e-09 Score=100.86 Aligned_cols=49 Identities=45% Similarity=1.064 Sum_probs=43.4
Q ss_pred cccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
+...|.+|+.. +.||.||.|+++||+.||.|||..+|.++|+|+.|...
T Consensus 57 ~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 57 ECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp GGCCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 34579999874 56999999999999999999999999999999999753
No 125
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=98.66 E-value=9.7e-09 Score=89.60 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=47.7
Q ss_pred ccchhhhhhhcc-CCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhhhc
Q 001302 191 WTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (1104)
Q Consensus 191 ~~~verIi~~r~-~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~~~ 245 (1104)
...||+||++|. ..+..+|||||+|++++++|||.+..+..++..|+.|......
T Consensus 13 ~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~~ 68 (78)
T 2dnt_A 13 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTE 68 (78)
T ss_dssp SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSC
T ss_pred eEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhhc
Confidence 348999999996 4678999999999999999999999887789999999875543
No 126
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.61 E-value=6.4e-09 Score=84.28 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=44.3
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhh
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (1104)
.||+||++|...+..+|||||+|.|++++|||.+..+ .++..|++|...+
T Consensus 4 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~q 53 (55)
T 3f2u_A 4 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 53 (55)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHC--
T ss_pred EEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC-CCHHHHHHHHHHc
Confidence 6899999998888999999999999999999999888 5789999998643
No 127
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=98.60 E-value=1.3e-08 Score=87.63 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=45.1
Q ss_pred cchhhhhhhccC-CccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 192 TTVDRILACRGE-DDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 192 ~~verIi~~r~~-~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
..||+||++|.. +|..+|||||+|.|++++|||....+..++..|+.|...
T Consensus 22 yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 73 (75)
T 2rsn_A 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR 73 (75)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred EEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence 489999999954 578899999999999999999998887788999999863
No 128
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.58 E-value=8.9e-09 Score=86.88 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=45.8
Q ss_pred CccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 190 ~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
+...||+||+.|...+..+|||||+|.|++++|||.+..+ .++..|+.|...
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL-~c~~lI~~F~~~ 66 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 66 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHH
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC-CCHHHHHHHHHH
Confidence 3458999999998888899999999999999999999888 578999999864
No 129
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.57 E-value=1.7e-08 Score=84.52 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=43.5
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.||+||++|...+..+|||||+|.|++++|||....+.. ...|+.|..
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~-~~li~~f~~ 59 (64)
T 2dnv_A 12 AAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD-ARLLAAFES 59 (64)
T ss_dssp CCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC-HHHHHHHHC
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC-HHHHHHHHH
Confidence 899999999888889999999999999999999988765 578999976
No 130
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.56 E-value=1.1e-08 Score=88.89 Aligned_cols=51 Identities=25% Similarity=0.671 Sum_probs=43.8
Q ss_pred cccccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 48 DAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 48 ~~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
+.+..+|.+|+.. +.|+.||.|+.+||+.|+.+++...|.+.|+|+.|...
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3445789999976 35999999999999999999998888899999999753
No 131
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.56 E-value=1.8e-07 Score=113.64 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcC--CCe
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p--~~~ 360 (1104)
.++||+|.+.+.-+......++.+++...||+|||+..+.-+.. ...++||++|+ .+..|+.+++..+.. +++
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 47899999998877777788899999999999999987655443 23589999995 667899999987642 567
Q ss_pred EEEEecC
Q 001302 361 VVMYVGT 367 (1104)
Q Consensus 361 vv~~~g~ 367 (1104)
++++.|.
T Consensus 78 ~~~l~gr 84 (551)
T 3crv_A 78 FSFLVGK 84 (551)
T ss_dssp EEECCCH
T ss_pred EEEEccc
Confidence 7777663
No 132
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.56 E-value=2.2e-08 Score=86.07 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=45.9
Q ss_pred CccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 190 ~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
+| .|++||++|...+..+|||||+|.+++++|||....+ .++..|+.|...
T Consensus 13 ey-~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL-~~~~li~~f~~~ 63 (73)
T 1ap0_A 13 EY-VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 63 (73)
T ss_dssp CC-EEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC-CCHHHHHHHTTT
T ss_pred eE-EEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC-CCHHHHHHHHHH
Confidence 45 9999999998888999999999999999999999887 578999999864
No 133
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.53 E-value=3.3e-08 Score=84.37 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=47.1
Q ss_pred CccchhhhhhhccCC-ccce-eeeeeeeeccccccccccCCccccHHHHHHHHHhhh
Q 001302 190 EWTTVDRILACRGED-DEKE-YLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (1104)
Q Consensus 190 ~~~~verIi~~r~~~-~~~~-yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (1104)
+| .||+||++|... +..+ |||||+|.+++++|||....+..++..|+.|.....
T Consensus 8 ey-~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 8 EY-EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp SS-CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred eE-EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence 44 899999999766 7777 999999999999999999888788999999987543
No 134
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.53 E-value=1.3e-07 Score=101.71 Aligned_cols=150 Identities=21% Similarity=0.163 Sum_probs=86.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHH-HhcCCC---CceEEEeCcccH-HHHHHHHHHHcCCC
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERI---SPHLVVAPLSTL-RNWEREFATWAPQM 359 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~-l~~~~~---~p~LIV~P~s~l-~qW~~E~~~~~p~~ 359 (1104)
.++++|.+++..+ ..+...++..++|+|||.+...++.. +...+. ..+++++|...+ .+..+.+......
T Consensus 61 p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 61 PVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp GGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred ChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4788999998877 56788999999999999765444433 333322 268888996544 4555556554311
Q ss_pred eEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCccc
Q 001302 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1104)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHr 439 (1104)
.+....|... ...........+|+|+|.+.+...... .--++++||+||||+
T Consensus 136 ~~~~~~g~~~---------------------------~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 136 EPGKSCGYSV---------------------------RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHE 187 (235)
T ss_dssp CTTSSEEEEE---------------------------TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTS
T ss_pred ccCceEEEee---------------------------chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCcc
Confidence 1000000000 000001124578999999887654322 123567999999998
Q ss_pred c-cCccc---HHHHHHHhcccccEEEEecCCC
Q 001302 440 L-KNKDS---KLFSSLKQYSTRHRVLLTGTPL 467 (1104)
Q Consensus 440 l-kn~~s---~~~~~l~~l~~~~rllLTgTPl 467 (1104)
. -+... .+...+........+++|||+-
T Consensus 188 ~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 188 RDINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 4 22111 1122222223446799999973
No 135
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.52 E-value=2.8e-08 Score=93.58 Aligned_cols=47 Identities=38% Similarity=0.994 Sum_probs=43.1
Q ss_pred ccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~~---l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...|.+|+.+++ |+.|+.|+++||+.||.||+..+|.++|+|+.|..
T Consensus 54 C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 54 CKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp TCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CCcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 357999998775 99999999999999999999999999999999975
No 136
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.52 E-value=6.8e-09 Score=98.38 Aligned_cols=52 Identities=33% Similarity=0.776 Sum_probs=45.5
Q ss_pred ccccccccccccCCCCeeecCCCCCccccCcCCCCCC-----CC--CCCCCccCcCCCC
Q 001302 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLK-----AP--PSGSWRCPECVSP 98 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~-----~~--p~~~W~C~~C~~~ 98 (1104)
++.++++|.+|+++|+|++||.|+++||..|+.|++. .+ |.+.|.|+.|...
T Consensus 53 ~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4567789999999999999999999999999998853 33 7899999999754
No 137
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.51 E-value=2.5e-08 Score=83.17 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=44.4
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
+||+||++|...+..+|||||+|.|++++|||.+..+. +++.|+.|...
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-c~~li~~f~~~ 50 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK-CVRILKQFHKD 50 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC-CHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC-CHHHHHHHHHH
Confidence 58999999988889999999999999999999998885 78999999764
No 138
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.51 E-value=1.5e-08 Score=83.30 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=44.3
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhh
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (1104)
.|++||++|...+..+|||||+|.|++++|||.+..+ .++..|..|....
T Consensus 5 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~~ 54 (59)
T 3fdt_A 5 VVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHC--
T ss_pred EEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC-CCHHHHHHHHHhh
Confidence 7999999998888999999999999999999999888 5789999998743
No 139
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.46 E-value=3e-08 Score=80.09 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=43.8
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
..|++||++|...+..+|||||+|.|++++|||....+. .+..|+.|..
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL-DARLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC-CHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC-CHHHHHHHHh
Confidence 379999999988889999999999999999999998876 4888999976
No 140
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.46 E-value=2.1e-08 Score=83.40 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=47.2
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhhh
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (1104)
..|++||++|...+..+|||||+|.|++++|||.+..+..+++.|+.|....+
T Consensus 5 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~ 57 (62)
T 3lwe_A 5 FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIA 57 (62)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhH
Confidence 37999999998888999999999999999999999888778999999987543
No 141
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.5e-08 Score=83.83 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=45.4
Q ss_pred CccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhh
Q 001302 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ 243 (1104)
Q Consensus 190 ~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (1104)
+| .||+||++|...+..+|||||+|.+++++|||.+..+.. ...|+.|....
T Consensus 10 ey-~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~-~~li~~f~~~~ 61 (74)
T 2d9u_A 10 VF-AAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKE 61 (74)
T ss_dssp CC-CEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC-HHHHHHHHHHH
T ss_pred cE-EEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC-HHHHHHHHHhh
Confidence 45 899999999888889999999999999999999887765 68899998743
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=88.64 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=44.3
Q ss_pred cccccccccccCCCCe---eecCCCCCccccCcCCCCCCCCCCCCCccCcCC
Q 001302 48 DAKDDSCQACGESENL---MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1104)
Q Consensus 48 ~~~~~~C~~C~~~~~l---~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1104)
+.++++|.+|+.+|++ +.|+.|+++||..||.|++..++.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899999998875 999999999999999999888888999999986
No 143
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.41 E-value=3.7e-08 Score=79.86 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=43.1
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.||+||++|...+..+|||||+|.|++++|||..+.+. .+..|+.|..
T Consensus 5 ~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~-~~~li~~f~~ 52 (55)
T 1pfb_A 5 AAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHHT
T ss_pred EEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC-CHHHHHHHHH
Confidence 79999999987888999999999999999999988775 3788999975
No 144
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.41 E-value=4.6e-08 Score=78.93 Aligned_cols=48 Identities=31% Similarity=0.410 Sum_probs=43.0
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.|++||++|...+..+|||||+|.|++++|||....+.. +..|..|..
T Consensus 5 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~-~~li~~f~~ 52 (54)
T 3h91_A 5 AAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQK 52 (54)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCS-HHHHHHHHC
T ss_pred EEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCCC-HHHHHHHHh
Confidence 799999999888899999999999999999999888764 778888875
No 145
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.40 E-value=6.9e-08 Score=82.40 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=44.3
Q ss_pred CccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 190 ~~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
+| .||+||+.|...+..+|||||+|.+++++|||.+..+. ++..|+.|.+
T Consensus 21 ey-eVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~-~~~li~~F~~ 70 (73)
T 2k1b_A 21 VF-AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL-DPRLVMAYEE 70 (73)
T ss_dssp CC-CCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS-CHHHHHHHHT
T ss_pred eE-EEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC-CHHHHHHHHH
Confidence 44 89999999987888999999999999999999998876 4788999975
No 146
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.40 E-value=2.1e-07 Score=79.30 Aligned_cols=46 Identities=30% Similarity=0.920 Sum_probs=39.4
Q ss_pred cccccccccC--CCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...+| +|++ .|.|+.||. |+ .+||+.|+ .|...|.+.|+||.|...
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCcc
Confidence 35778 7997 577999999 88 69999999 588889999999999864
No 147
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=98.39 E-value=5.8e-08 Score=89.20 Aligned_cols=75 Identities=25% Similarity=0.536 Sum_probs=48.0
Q ss_pred CCccccccccccc-cCcCCCC------------CcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHH
Q 001302 99 LNDIDKILDCEMR-PTVAGDS------------DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRT 165 (1104)
Q Consensus 99 ~~~iekil~wr~~-p~~~~~~------------~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~ 165 (1104)
...|++||++|.. |.+.+.. .............+|||||+|+|+.||||+|++.|.+. ..+++ +
T Consensus 13 ~etie~v~~~r~g~~g~tg~~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~--~~~g~-k 89 (115)
T 2b2y_C 13 FETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQ--NVRGM-K 89 (115)
T ss_dssp CCBEEEEEEEEEECTTCCSGGGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHH--TCBCT-H
T ss_pred HHHHHHHHHhhcCCCCCCCCCCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCc--cchHH-H
Confidence 4579999999864 3333221 10011111223459999999999999999999999763 23555 4
Q ss_pred HHHhhhhhhcc
Q 001302 166 KVNNFHRQMSS 176 (1104)
Q Consensus 166 kl~~f~~~~~~ 176 (1104)
+|.+|.++...
T Consensus 90 klenY~kk~~e 100 (115)
T 2b2y_C 90 KLDNYKKKDQE 100 (115)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHH
Confidence 89999988654
No 148
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=98.38 E-value=2.9e-08 Score=79.67 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=38.6
Q ss_pred chhhhhhhccCC-ccc-eeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 193 TVDRILACRGED-DEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 193 ~verIi~~r~~~-~~~-~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
.||+||++|... |.. +|||||+| |+++|||.++.+. +..|+.|..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkg--y~~~TWEp~~nL~--~~li~~f~~ 48 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCCSS--SSSHHHHTS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECC--CCcCCccchHHCC--HHHHHHHHH
Confidence 689999999766 777 99999998 8999999988765 677888865
No 149
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=98.37 E-value=9.6e-08 Score=82.39 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=45.0
Q ss_pred chhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHhhh
Q 001302 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (1104)
Q Consensus 193 ~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~~~ 244 (1104)
.||+||++|...+..+|||||+|.|++++|||....+.. +..|+.|....+
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~-~~li~~f~~~~~ 65 (74)
T 2kvm_A 15 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILD-PRLVMAYEEKEE 65 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSC-HHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCC-HHHHHHHHHHhh
Confidence 899999999878889999999999999999999988764 788999987543
No 150
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.37 E-value=4.3e-07 Score=80.86 Aligned_cols=48 Identities=29% Similarity=0.865 Sum_probs=40.1
Q ss_pred ccccccccccC--CCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 49 AKDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 49 ~~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....+| +|++ .|.|+.||. |+ .+||+.|+ .|...|.+.|+|+.|....
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcC
Confidence 345778 9998 577999999 77 68999999 5788889999999998643
No 151
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=98.36 E-value=1.1e-08 Score=89.61 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=43.1
Q ss_pred CCccchhhhhhhcc-CCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 189 PEWTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 189 ~~~~~verIi~~r~-~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
++...||+||++|. ..+..+|||||+|.|++++|||....+..++..|+.|..
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~ 74 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNG 74 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCS
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHH
Confidence 45558999999985 457789999999999999999998877655666777754
No 152
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.34 E-value=5.8e-08 Score=82.53 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=43.0
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
..||+||+.|...+..+|||||+|.|++++|||.++.+. ++..|+.|..
T Consensus 21 yeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~-~~~lI~~F~~ 69 (72)
T 1pdq_A 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 69 (72)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHC-
T ss_pred EEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC-CHHHHHHHHH
Confidence 389999999987888999999999999999999988775 4788999865
No 153
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.29 E-value=1.5e-07 Score=77.13 Aligned_cols=45 Identities=33% Similarity=0.975 Sum_probs=38.7
Q ss_pred cccccccccC--CCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...+| +|++ .|.|+.||. |+ ..||+.|+ .|...|.+.|+||.|..
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccC
Confidence 45678 8998 677999999 88 59999999 58888999999999964
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.27 E-value=2e-07 Score=76.86 Aligned_cols=45 Identities=31% Similarity=0.944 Sum_probs=38.3
Q ss_pred cccccccccC--CCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...+| +|++ .|.|+.||. |+ .+||+.|+ .|...|.+.|+||.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccC
Confidence 35678 8987 567999999 76 79999999 58888999999999964
No 155
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.23 E-value=2.3e-07 Score=76.69 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=42.0
Q ss_pred cchhhhhhhccCCccc-eeeeeeeeeccccccccccCCccccHHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEK-EYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~-~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~ 241 (1104)
..|++||++|...+.. +|||||+|.|.+++|||.+..+. +...|.+|..
T Consensus 8 y~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~~~~ 57 (61)
T 3g7l_A 8 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWK 57 (61)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT-BCHHHHHHHH
T ss_pred EEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC-CHHHHHHHHH
Confidence 3799999999877777 99999999999999999998874 5777777765
No 156
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.23 E-value=6.8e-07 Score=81.60 Aligned_cols=44 Identities=20% Similarity=0.579 Sum_probs=37.2
Q ss_pred ccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 53 SCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 53 ~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+|..|..++.||.|+.|+++||+.|+.|++..+|. .|+|+.|..
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~ 75 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQP 75 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcC
Confidence 35555556779999999999999999999888874 899999974
No 157
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.22 E-value=2.9e-07 Score=76.21 Aligned_cols=45 Identities=31% Similarity=0.957 Sum_probs=38.4
Q ss_pred cccccccccC--CCCeeecCC--CC-CccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGE--SENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~--~~~l~~C~~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...+| +|++ .|.|+.||. |+ ..||+.|+ .|...|.+.|+||.|..
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCccc
Confidence 34678 8998 577999999 66 89999999 57788899999999975
No 158
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=98.15 E-value=9.4e-07 Score=79.31 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=44.3
Q ss_pred chhhhhhhcc--CCccceeeeeeeeec-cccccccccCCccccHHHHHHHHHhh
Q 001302 193 TVDRILACRG--EDDEKEYLVKYKELS-YDECYWEYESDISAFQPEIERFIKIQ 243 (1104)
Q Consensus 193 ~verIi~~r~--~~~~~~yLVKWkgL~-Y~~~tWe~~~~~~~~~~~i~~~~~~~ 243 (1104)
.|++||++|. .++..+|||||+|.| .++.|||....+..++.+|+.|....
T Consensus 32 ~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~ 85 (92)
T 2rso_A 32 VVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEH 85 (92)
T ss_dssp CEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHH
T ss_pred EEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHc
Confidence 8999999995 457889999999987 57899999988877899999998744
No 159
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.14 E-value=9.1e-07 Score=78.58 Aligned_cols=46 Identities=28% Similarity=0.768 Sum_probs=38.3
Q ss_pred ccccccccccC--CCCeeecCCCC---CccccCcCCCCCCCCCCCCCccCc-CCC
Q 001302 49 AKDDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPE-CVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~--~~~l~~C~~C~---~~~H~~Cl~p~l~~~p~~~W~C~~-C~~ 97 (1104)
....+| +|+. .|.|+.||.|. .+||+.|+ .|...|.+.|+||. |..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcc
Confidence 345678 8986 46799999966 89999999 68888999999999 973
No 160
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=98.03 E-value=9.4e-07 Score=74.96 Aligned_cols=49 Identities=31% Similarity=0.750 Sum_probs=41.6
Q ss_pred ccccccccc--CCCCeeecCCCCCccccCcCCCC------------CCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACG--ESENLMSCDTCTYAYHAKCLVPP------------LKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~--~~~~l~~C~~C~~~~H~~Cl~p~------------l~~~p~~~W~C~~C~~~ 98 (1104)
+++.|.+|. ..+.++.|..|+|.||..||.++ +...+...|.|+.|.+.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 568899999 67789999999999999999876 44457788999999753
No 161
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.71 E-value=4.8e-06 Score=78.42 Aligned_cols=45 Identities=36% Similarity=0.753 Sum_probs=36.8
Q ss_pred cccccccCC----------CCeeecCCCCCccccCcCCCCCC---CCCCCCCccCcCC
Q 001302 52 DSCQACGES----------ENLMSCDTCTYAYHAKCLVPPLK---APPSGSWRCPECV 96 (1104)
Q Consensus 52 ~~C~~C~~~----------~~l~~C~~C~~~~H~~Cl~p~l~---~~p~~~W~C~~C~ 96 (1104)
++|.+|..+ ++|+.|+.|+++||+.||.++.. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468888654 36999999999999999987643 4678899999995
No 162
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=97.67 E-value=4.9e-06 Score=69.53 Aligned_cols=51 Identities=31% Similarity=0.537 Sum_probs=38.8
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~ 174 (1104)
-.|++||+.|.+.. ..+|||||+|+++-+|||+|++.|.+ + ..+..|.++.
T Consensus 11 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~~l~~-----~---~li~~f~~~~ 61 (64)
T 2dnv_A 11 FAAEALLKRRIRKG----------------RMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFESGP 61 (64)
T ss_dssp CCCCCEEEEEESSS----------------SEEEEECCSSCCCSSCCEEETTTCCC-----H---HHHHHHHCCT
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEECCCCcccCCccCHhHCCC-----H---HHHHHHHHHc
Confidence 46899999875311 24899999999999999999998853 2 3577787654
No 163
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=97.65 E-value=5.1e-06 Score=69.15 Aligned_cols=39 Identities=26% Similarity=0.596 Sum_probs=31.7
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHH
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~ 154 (1104)
+.|++||+.|.... ..+|||||+|+++-+|||+|++.|.
T Consensus 1 ~EVE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 1 GEVEYLCDYKKIRE----------------QEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp CCEEEEEEEEECSS----------------CEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CCceEEEEEEEeCC----------------eEEEEEEEecCCCcCCcEeEHHHCC
Confidence 46889998865311 2499999999999999999999985
No 164
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=7.2e-06 Score=70.59 Aligned_cols=51 Identities=33% Similarity=0.627 Sum_probs=39.7
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~ 174 (1104)
-.|++||+.|.... ..+|||||+|+++-||||+|++.|.+ + ..+..|.++.
T Consensus 11 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~~~ 61 (74)
T 2d9u_A 11 FAAECILSKRLRKG----------------KLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKKE 61 (74)
T ss_dssp CCEEEEEEEEEETT----------------EEEEEEEETTSCTTTCEEEEGGGCCC-----H---HHHHHHHHHH
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEECCCCCccCccccHHHCCC-----H---HHHHHHHHhh
Confidence 46899999875421 24899999999999999999998853 2 3578887654
No 165
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=1.3e-05 Score=67.64 Aligned_cols=62 Identities=35% Similarity=0.614 Sum_probs=41.1
Q ss_pred CCccCcCCCCCCccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHH
Q 001302 89 SWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1104)
Q Consensus 89 ~W~C~~C~~~~~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~ 168 (1104)
..+.|.+. .|++||+.|.+.... . + ....+|||||+|++|-+|||+|++.|. + ..+.
T Consensus 5 ~~~~pe~~----~VErIl~~r~~~~~~-~------g---~~~~eYLVKWkgl~y~e~TWE~~~~l~------~---~~I~ 61 (68)
T 2epb_A 5 SSGNPDYV----EVDRILEVAHTKDAE-T------G---EEVTHYLVKWCSLPYEESTWELEEDVD------P---AKVK 61 (68)
T ss_dssp CSSCSSCC----CCCEEEEEEEEECSS-S------C---CEEEEEEEECTTSCGGGCCEEETTTSC------H---HHHH
T ss_pred CcCCCCce----EEeEEEEEEeccccc-C------C---CcceEEEEEEcCCChhcCccccchhcC------H---HHHH
Confidence 34455443 589999987432100 0 0 012499999999999999999998872 2 3567
Q ss_pred hhhhh
Q 001302 169 NFHRQ 173 (1104)
Q Consensus 169 ~f~~~ 173 (1104)
.|.++
T Consensus 62 ~f~~r 66 (68)
T 2epb_A 62 EFESL 66 (68)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 166
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=97.57 E-value=5.3e-06 Score=66.77 Aligned_cols=49 Identities=35% Similarity=0.659 Sum_probs=36.1
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.|++|++.|... ...+|||||+|+++-+|||+|++.|.+ | ..+..|.++
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~r 53 (54)
T 3h91_A 5 AAECILSKRLRK----------------GKLEYLVKWRGWSSKHNSWEPEENILD-----P---RLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCS-----H---HHHHHHHC-
T ss_pred EEEEEEEEEEeC----------------CcEEEEEEEeCCCCcCCCeecHhHCCC-----H---HHHHHHHhc
Confidence 468888876431 124899999999999999999999853 3 246777654
No 167
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=1.8e-05 Score=67.12 Aligned_cols=44 Identities=30% Similarity=0.894 Sum_probs=36.0
Q ss_pred ccccccccC--CCCeeecCCCC---CccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQACGE--SENLMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~--~~~l~~C~~C~---~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+| +|+. .|.|+.||.|+ ..||+.|+ .|...|.+.|+|+.|..
T Consensus 6 ~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 6 SGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCS-TTSCCCCSSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHH
T ss_pred CeEE-EcCCCCCCCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCc
Confidence 4667 4775 45799999975 78999999 57778899999999974
No 168
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=97.53 E-value=6.9e-06 Score=66.17 Aligned_cols=49 Identities=33% Similarity=0.589 Sum_probs=36.1
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.|++|++.|... ...+|||||+|+++-+|||+|++.|.+ | ..+..|..+
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~~-----~---~li~~f~~R 53 (54)
T 3i91_A 5 AAEALLKRRIRK----------------GRMEYLVKWKGWSQKYSTWEPEENILD-----A---RLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGBCC-----H---HHHHHHHHC
T ss_pred EEEEEEEEEEeC----------------CcEEEEEEEeCCCcccCcccchhHCCC-----H---HHHHHHHhc
Confidence 467888876431 124999999999999999999999853 3 246667543
No 169
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.52 E-value=6.9e-06 Score=66.42 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=36.3
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.|++||+.|... ...+|||||+|+++-+|||+|++.|.+ + ..+..|.++
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVKWkgy~~~~~TWEp~~~l~~-----~---~li~~f~~~ 53 (55)
T 1pfb_A 5 AAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNILD-----R---RLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCCS-----T---HHHHHHHTS
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEcCCCCccCcEeEHHHCCC-----H---HHHHHHHHh
Confidence 478888876431 124899999999999999999998853 2 246667543
No 170
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=97.50 E-value=7.9e-06 Score=68.89 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=37.8
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
..|++||+.|.+.. ..+|||||+|+++-+|||+|++.|. ++ ..+..|.++
T Consensus 17 y~VEkIld~R~~~g----------------~~eYlVKWkGy~~~~~TWEp~enL~-----c~---~lI~~F~~~ 66 (69)
T 1q3l_A 17 YAVEKIIDRRVRKG----------------MVEYYLKWKGYPETENTWEPENNLD-----CQ---DLIQQYEAS 66 (69)
T ss_dssp EEEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEEGGGEE-----CH---HHHHHHHHH
T ss_pred EEEEEEEEEEEECC----------------eEEEEEEEcCCCcccCCccchHHCC-----CH---HHHHHHHHH
Confidence 46899999875321 2489999999999999999999984 33 346777653
No 171
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=97.50 E-value=8.1e-06 Score=66.00 Aligned_cols=49 Identities=33% Similarity=0.587 Sum_probs=36.2
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
.|++||+.|... ...+|||||+|+++.+|||+|++.|. +|. .+..|.++
T Consensus 4 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~-----~~~---li~~f~~~ 52 (55)
T 3f2u_A 4 VVEKVLDRRVVK----------------GKVEYLLKWKGFSDEDNTWEPEENLD-----CPD---LIAEFLQS 52 (55)
T ss_dssp CEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCC-----CHH---HHHHHHC-
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEEeCCCccCCeeEHHHCC-----CHH---HHHHHHHH
Confidence 478899876432 12489999999999999999999983 333 46677654
No 172
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.49 E-value=1.4e-05 Score=68.76 Aligned_cols=52 Identities=19% Similarity=0.597 Sum_probs=38.0
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
-.|++||+.|.... ...+|||||+|+++-+|||+|++.|.. ++ ..++.|.++
T Consensus 22 yeVE~Il~~r~~~~---------------g~~~YlVkWkGy~~~~~TWEp~~nl~~----~~---~li~~f~~~ 73 (75)
T 2rsn_A 22 YEVEDILADRVNKN---------------GINEYYIKWAGYDWYDNTWEPEQNLFG----AE---KVLKKWKKR 73 (75)
T ss_dssp EEEEEEEEEEECSS---------------SCEEEEEEEESSCGGGCEEEEGGGGTT----TH---HHHHHHHHH
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEECCCCCcCCeeecHHHccC----hH---HHHHHHHHh
Confidence 35899998864321 014899999999999999999998853 22 356777765
No 173
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.48 E-value=5.1e-05 Score=64.01 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=37.1
Q ss_pred ccccccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 49 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~~~---~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
....+| +|+... .++.|+.|...||..|+.......| +.|+|+.|..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCC
Confidence 345678 888753 4999999999999999976655444 7999999974
No 174
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=97.47 E-value=3.3e-05 Score=65.76 Aligned_cols=53 Identities=17% Similarity=0.423 Sum_probs=38.7
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhh-hhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQ-YLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~e-ylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~ 174 (1104)
-.|++||+.|.... ...+ |||||+|+++-+|||+|++.|. .++ ..+..|.++.
T Consensus 9 y~VE~Il~~r~~~~---------------g~~~~YlVKWkGy~~~~~TWEp~enL~----~~~---~li~~f~~~~ 62 (70)
T 1g6z_A 9 YEVERIVDEKLDRN---------------GAVKLYRIRWLNYSSRSDTWEPPENLS----GCS---AVLAEWKRRK 62 (70)
T ss_dssp SCCCSCSEEECCTT---------------SSCCEEEECCTTTTSSCCEEECGGGGS----SCH---HHHHHHHHHH
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEEECCCCCCCCceecHHHHh----hhH---HHHHHHHHhc
Confidence 36899999875431 0136 9999999999999999999983 233 3467777654
No 175
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=97.46 E-value=1.1e-05 Score=68.83 Aligned_cols=50 Identities=32% Similarity=0.579 Sum_probs=38.1
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
-.|++||+.|.+.. ..+|||||+|++.-+|||+|++.|.+ + ..++.|.++
T Consensus 22 yeVEkIld~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~enL~~-----~---~li~~F~~~ 71 (73)
T 2k1b_A 22 FAVESIRKKRVRKG----------------KVEYLVKWKGWPPKYSTWEPEEHILD-----P---RLVMAYEEK 71 (73)
T ss_dssp CCCSEEEEEEEETT----------------EEEEEEECTTCCGGGCCEEETTSCSC-----H---HHHHHHHTS
T ss_pred EEEEEEEEEEEcCC----------------cEEEEEEECCCCcccCeecchHHCCC-----H---HHHHHHHHh
Confidence 36899999875321 24899999999999999999998853 2 356777654
No 176
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=97.43 E-value=2.5e-05 Score=64.65 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=37.5
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~ 172 (1104)
.|++||+.|..+. ...+|||||+|++|-+|||++++ +. .|.+...++.|..
T Consensus 13 ~VeRIi~~r~~~~---------------g~~eYLVKWkgl~y~e~TWE~~~-~~-----~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 13 MIHRILNHSVDKK---------------GHVHYLIKWRDLPYDQASWESED-VE-----IQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCEEEECTT---------------CCEEEEECCTTSCTTTCEEEETT-CC-----CTTHHHHHHHHHH
T ss_pred EEEEEEEEEecCC---------------CCEEEEEEEcCCCcccCcccCCc-cc-----CcchHHHHHHHHh
Confidence 5789998864311 12499999999999999999997 32 4666666777754
No 177
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.43 E-value=5e-05 Score=63.53 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=37.8
Q ss_pred ccccccccccCC----CCeeecCCCCCccccCcCCCCCCCCC-CCCCccCcCCCC
Q 001302 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (1104)
Q Consensus 49 ~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~ 98 (1104)
.+..+|.+|+.. +.++.|+.|...||..|+........ ...|+|+.|...
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345779999864 44999999999999999954433222 378999999754
No 178
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.40 E-value=2.2e-05 Score=65.12 Aligned_cols=52 Identities=27% Similarity=0.462 Sum_probs=38.5
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~ 174 (1104)
-.|++||+.|... ...+|||||+|+++-+|||+|++.|. .++ ..+..|.++.
T Consensus 5 y~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~----~~~---~li~~f~~~~ 56 (62)
T 3lwe_A 5 FEVEKILDMKTEG----------------GKVLYKVRWKGYTSDDDTWEPEIHLE----DCK---EVLLEFRKKI 56 (62)
T ss_dssp CCEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEHHHHT----TCH---HHHHHHHHHH
T ss_pred EEEEEEEEEEEcC----------------CeEEEEEEEeCCCCcCCCeeeHhHhh----ccH---HHHHHHHHhh
Confidence 3578899876431 12489999999999999999999984 233 3577777654
No 179
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.39 E-value=1.3e-05 Score=68.92 Aligned_cols=50 Identities=32% Similarity=0.579 Sum_probs=38.0
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhh
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~ 173 (1104)
-.|++||+.|.... ..+|||||+|+++-+|||+|++.|.+ + ..+..|..+
T Consensus 14 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~~L~~-----~---~li~~f~~~ 63 (74)
T 2kvm_A 14 FAVESIRKKRVRKG----------------KVEYLVKWKGWPPKYSTWEPEEHILD-----P---RLVMAYEEK 63 (74)
T ss_dssp CCEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEETTTCSC-----H---HHHHHHHHH
T ss_pred EEEEEEEEEEEeCC----------------cEEEEEEEcCCCCccCeEeeHHHCCC-----H---HHHHHHHHH
Confidence 46899999875321 24899999999999999999998853 2 356777654
No 180
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.34 E-value=2.8e-05 Score=67.66 Aligned_cols=54 Identities=26% Similarity=0.588 Sum_probs=39.9
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhhc
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~ 175 (1104)
-.|++||+.|.... ...+|||||+|+++-+|||+|++.|.. ++ ..+..|.++..
T Consensus 14 y~VE~Il~~r~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~~l~~----~~---~li~~f~~~~~ 67 (78)
T 2dnt_A 14 YEVERIVDKRKNKK---------------GKTEYLVRWKGYDSEDDTWEPEQHLVN----CE---EYIHDFNRRHT 67 (78)
T ss_dssp CCCCCEEEEEECTT---------------SCEEEEECBTTBCGGGCEEEETTTCTT----CH---HHHHHHHHHHS
T ss_pred EEEEEEEEEEEcCC---------------CcEEEEEEECCCCccCCceecHHHHHh----HH---HHHHHHHhhhh
Confidence 46899999864221 124899999999999999999998742 22 35778877653
No 181
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.33 E-value=1.5e-05 Score=67.65 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=31.8
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHH
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~ 154 (1104)
-.|++||+.|.+. ...+|||||+|+++-+|||+|++.|.
T Consensus 21 yeVEkIld~r~~~----------------g~~~YlVKWkGy~~~~nTWEP~enL~ 59 (72)
T 1pdq_A 21 YAAEKIIQKRVKK----------------GVVEYRVKWKGWNQRYNTWEPEVNIL 59 (72)
T ss_dssp EEEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEEEEEeC----------------CcEEEEEEECCCCCccCeecchHHCC
Confidence 3689999987532 12489999999999999999999885
No 182
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.32 E-value=2.4e-05 Score=73.44 Aligned_cols=46 Identities=33% Similarity=0.652 Sum_probs=36.2
Q ss_pred ccccccccC---------CCCeeecCCCCCccccCcCCC--CC-CCCCCCCCccCcCC
Q 001302 51 DDSCQACGE---------SENLMSCDTCTYAYHAKCLVP--PL-KAPPSGSWRCPECV 96 (1104)
Q Consensus 51 ~~~C~~C~~---------~~~l~~C~~C~~~~H~~Cl~p--~l-~~~p~~~W~C~~C~ 96 (1104)
..+|.+|.. +++|+.|+.|+++||+.||.. ++ ..++.+.|+|+.|.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456888854 346999999999999999953 22 24568899999996
No 183
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=97.32 E-value=1.6e-05 Score=65.19 Aligned_cols=50 Identities=36% Similarity=0.660 Sum_probs=36.0
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhh
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~ 174 (1104)
.|++||+.|... ...+|||||+|+++-+|||+|++.|. +|. .+..|.++.
T Consensus 5 ~VE~Il~~r~~~----------------g~~~YlVkWkGy~~~~~TWEp~~nl~-----~~~---li~~f~~~~ 54 (59)
T 3fdt_A 5 VVEKVLDRRVVK----------------GQVEYLLKWKGFSEEHNTWEPEKNLD-----CPE---LISEFMKKY 54 (59)
T ss_dssp EEEEEEEEEEET----------------TEEEEEEEETTSCGGGCEEEEGGGEE-----CHH---HHHHHHC--
T ss_pred EEEEEEEEEEeC----------------CeEEEEEEEeCCCcccCCccchhHCC-----CHH---HHHHHHHhh
Confidence 478888876431 12499999999999999999999983 333 466776543
No 184
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.31 E-value=2e-05 Score=67.68 Aligned_cols=52 Identities=31% Similarity=0.567 Sum_probs=39.2
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHHHhhcChhHHHHHHhhhhhhc
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~ 175 (1104)
-.|++||+.|.... ..+|||||+|+++-+|||+|++.|. ++ ..+..|.++..
T Consensus 14 y~VE~Il~~r~~~g----------------~~~YlVKWkGy~~~~~TWEp~~nL~-----~~---~li~~f~~~~~ 65 (73)
T 1ap0_A 14 YVVEKVLDRRVVKG----------------KVEYLLKWKGFSDEDNTWEPEENLD-----CP---DLIAEFLQSQK 65 (73)
T ss_dssp CEEEEEEEEEECSS----------------SEEEEEEEESSSSCCCEEEETTTCC-----CH---HHHHHHTTTTT
T ss_pred EEEEEEEEEEEeCC----------------eEEEEEEECCCCCccCcEeeHHHCC-----CH---HHHHHHHHHhh
Confidence 46899999875421 2489999999999999999999883 23 35778876543
No 185
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=97.22 E-value=3.7e-05 Score=63.47 Aligned_cols=40 Identities=25% Similarity=0.709 Sum_probs=31.3
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHHH
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~~ 155 (1104)
.|++||+.|.... ...+|||||+|+++-+|||+|++.|.+
T Consensus 9 ~VE~Il~~r~~~g---------------~~~~YlVkWkGy~~~~~TWEp~~nl~~ 48 (61)
T 3g7l_A 9 EVEDILADRVNKN---------------GINEYYIKWAGYDWYDNTWEPEQNLFG 48 (61)
T ss_dssp EEEEEEEEEECTT---------------SCEEEEEEETTSCGGGCEEEEGGGGTB
T ss_pred EEEEEEEEEEECC---------------CEEEEEEEEeCCCCcCCceeeHhHCCC
Confidence 5788998765321 013899999999999999999999853
No 186
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.19 E-value=3.2e-05 Score=78.79 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=36.2
Q ss_pred ccccccccccCC----CCeeecCCCCCccccCcCCCCCCC-CCCCCCccCcCCC
Q 001302 49 AKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~-~p~~~W~C~~C~~ 97 (1104)
....+| +|+.+ +.+++||.|+.+||..|+...... .+.+.|+|+.|..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345789 99875 349999999999999999533221 2357999999975
No 187
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.18 E-value=0.00015 Score=62.16 Aligned_cols=47 Identities=21% Similarity=0.603 Sum_probs=36.2
Q ss_pred cccccccccCC---C-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~---~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
...+| +|+.. + .++.|+.|...||..|+...........|+|+.|..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34678 69864 3 499999999999999996554333357899999974
No 188
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.12 E-value=4.8e-05 Score=63.52 Aligned_cols=45 Identities=22% Similarity=0.702 Sum_probs=35.6
Q ss_pred cccccccccCCC----CeeecC-CCCCccccCcCCCCCCC--------CCCCCCccCcCC
Q 001302 50 KDDSCQACGESE----NLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECV 96 (1104)
Q Consensus 50 ~~~~C~~C~~~~----~l~~C~-~C~~~~H~~Cl~p~l~~--------~p~~~W~C~~C~ 96 (1104)
....|.+|++.. .++.|| .|...||..|+ .|+. .|.+.|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 346799999752 399999 99999999999 5543 367899999995
No 189
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.12 E-value=8.6e-05 Score=68.47 Aligned_cols=44 Identities=25% Similarity=0.801 Sum_probs=36.1
Q ss_pred cccccccCC----CCeeecC-CCCCccccCcCCCCCCC--------CCCCCCccCcCCC
Q 001302 52 DSCQACGES----ENLMSCD-TCTYAYHAKCLVPPLKA--------PPSGSWRCPECVS 97 (1104)
Q Consensus 52 ~~C~~C~~~----~~l~~C~-~C~~~~H~~Cl~p~l~~--------~p~~~W~C~~C~~ 97 (1104)
..|.+|++. +.++.|+ .|...||..|+ .|+. .|.+.|+||.|..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccC
Confidence 469999976 4588897 99999999999 5543 3668999999985
No 190
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.96 E-value=9.5e-05 Score=64.12 Aligned_cols=46 Identities=22% Similarity=0.710 Sum_probs=35.6
Q ss_pred ccccccccccCC---CCeeecCCCCCccccCcCCCCCCCC-------CCCCCccCcCCC
Q 001302 49 AKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAP-------PSGSWRCPECVS 97 (1104)
Q Consensus 49 ~~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~-------p~~~W~C~~C~~ 97 (1104)
.+..+| +|+.. +.++.|+.|...||..|+. +... +...|+|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg--l~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG--ISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS--CCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc--cchhhhhhccCCCCeEECcCCcC
Confidence 345778 79875 4599999999999999994 4332 247899999974
No 191
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.95 E-value=0.005 Score=74.54 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHcCCCeEE
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~p~~~vv 362 (1104)
+..|.+.|.+++..+ ..+...+|.-..|+|||.++.+++..+...+ .++++++|+........+.. .....
T Consensus 187 ~~~L~~~Q~~Av~~~----~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~----~~~a~ 257 (574)
T 3e1s_A 187 RKGLSEEQASVLDQL----AGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVT----GRTAS 257 (574)
T ss_dssp TTTCCHHHHHHHHHH----TTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHH----TSCEE
T ss_pred cCCCCHHHHHHHHHH----HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhh----cccHH
Confidence 467999999999876 3567788999999999998888777766543 58999999877665544421 11111
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccC
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn 442 (1104)
.++. -..+ .. . .+ ....-...++++|||||||.+-.
T Consensus 258 Tih~---------ll~~-------------------------~~-~-------~~--~~~~~~~~~~dvlIIDEasml~~ 293 (574)
T 3e1s_A 258 TVHR---------LLGY-------------------------GP-Q-------GF--RHNHLEPAPYDLLIVDEVSMMGD 293 (574)
T ss_dssp EHHH---------HTTE-------------------------ET-T-------EE--SCSSSSCCSCSEEEECCGGGCCH
T ss_pred HHHH---------HHcC-------------------------Cc-c-------hh--hhhhcccccCCEEEEcCccCCCH
Confidence 1100 0000 00 0 00 00111234678999999998743
Q ss_pred cccHHHHHHHhcccccEEEEecCCCCC
Q 001302 443 KDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1104)
Q Consensus 443 ~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1104)
. .+...+..+....+++|.|-|-|.
T Consensus 294 ~--~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 294 A--LMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp H--HHHHHHTTSCTTCEEEEEECTTSC
T ss_pred H--HHHHHHHhCcCCCEEEEEeccccc
Confidence 2 344445556677899999999774
No 192
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.95 E-value=0.0047 Score=76.20 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc-cHHHHHHHHHHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATW 355 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s-~l~qW~~E~~~~ 355 (1104)
..|-+.|.+||.... ....-.|+.-+.|+|||.+.+.++..+...+ .++||++|++ .+.+-..-+...
T Consensus 188 ~~LN~~Q~~AV~~al---~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFAL---SQKELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHH---HCSSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh---cCCCceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEcCchHHHHHHHHHHHhc
Confidence 569999999997653 2344578889999999999999998887754 4899999964 456665556554
No 193
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=96.92 E-value=0.00018 Score=64.52 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=39.2
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCccc-ccccccchHhHHHHhhcChhHHHHHHhhhhhhc
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSY-LHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy-~h~~W~~~~~l~~~~~~~~~~~~kl~~f~~~~~ 175 (1104)
-.|++||+.|+.+.. ...+|||||+|++. -++||+|+..|.. ++ ..|..|.++..
T Consensus 31 y~VE~Il~~r~~~~~--------------g~~~YlVkWkGy~~~~~~TWEP~~nl~~----c~---~li~~f~~~~~ 86 (92)
T 2rso_A 31 YVVEKVLKHRMARKG--------------GGYEYLLKWEGYDDPSDNTWSSEADCSG----CK---QLIEAYWNEHG 86 (92)
T ss_dssp CCEEEEEEEEECTTS--------------SCEEEEEEETTCCCCTTSEEECGGGGGT----SH---HHHHHHHHHHT
T ss_pred EEEEEEEEEEeecCC--------------CEEEEEEEEccCCCcccCccccHHHHhh----HH---HHHHHHHHHcC
Confidence 358899988753210 12489999999985 6799999999842 33 35788887654
No 194
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.92 E-value=0.006 Score=71.93 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC-cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHH
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~-~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~ 346 (1104)
..|.+-|.+++..+......+. ..+|.-..|+|||..+..++..+...+...+++++|+....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 4699999999987755444444 78899999999999998999988877666899999986654
No 195
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.91 E-value=0.0077 Score=73.87 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=94.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p~~~vv 362 (1104)
..|.+.|.+++..+. .+...++.-..|+|||.++..++..+......++||++|.+.. .+-...+... +++++
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~ 252 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 252 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc--CCeEE
Confidence 368999999997653 3456788899999999999888888876555699999997654 4444445443 33433
Q ss_pred EEecChhHHHHH-------HHhhhcC-CCCchhh-----hccccCcc-------cc-----ccccccccccEEEccHHHH
Q 001302 363 MYVGTSQARNII-------REYEFYF-PKNPKKV-----KKKKSGQV-------VS-----ESKQDRIKFDVLLTSYEMI 417 (1104)
Q Consensus 363 ~~~g~~~~r~~i-------~~~e~~~-~~~~~~~-----~~~~~~~~-------~~-----~~~~~~~~~dVvitsye~l 417 (1104)
-+ |... |..+ .-+.... ....... .+...+.. +. ....-....+||++|...+
T Consensus 253 R~-~~~~-r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 253 RL-CAKS-REAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EC-CCTG-GGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred ee-cccc-chhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 22 2211 1000 0000000 0000000 00000000 00 0000113467888887654
Q ss_pred hhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCC
Q 001302 418 NLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1104)
Q Consensus 418 ~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1104)
.. ..+....|++||||||...-.... .+..+....+++|-|=|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~----li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC----MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH----HHHHHhcCCeEEEecChhcc
Confidence 32 345667899999999976544321 12222345689999998763
No 196
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.84 E-value=0.00026 Score=61.62 Aligned_cols=46 Identities=28% Similarity=0.774 Sum_probs=35.5
Q ss_pred cccccccccCC---CCeeecC--CCCCccccCcCCCCCCCCC-------CCCCccCcCCCC
Q 001302 50 KDDSCQACGES---ENLMSCD--TCTYAYHAKCLVPPLKAPP-------SGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~--~C~~~~H~~Cl~p~l~~~p-------~~~W~C~~C~~~ 98 (1104)
...+| +|+.. +.|+.|+ .|...||..|+. +...+ ...|+|+.|...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg--i~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI--LPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS--CCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc--cccccccccccCCCCEECCCCCcc
Confidence 34678 79875 4599999 999999999994 44333 368999999753
No 197
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=96.82 E-value=0.00022 Score=57.14 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=27.9
Q ss_pred ccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHH
Q 001302 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (1104)
Q Consensus 101 ~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~ 154 (1104)
.|++||+.|.... +. ..+|||||+|+ -+|||+|++.|.
T Consensus 2 ~VE~Ild~r~~~~--g~------------~~~YlVKWkgy--~~~TWEp~~nL~ 39 (54)
T 1x3p_A 2 VAESVIGKRVGDD--GK------------TIEYLVKWTDM--SDATWEPQDNVD 39 (54)
T ss_dssp CSSCCCCBSSCSS--SC------------CCCBCCCCSSS--SSCSCSTTCCSS
T ss_pred eEEEEEEEEEcCC--Cc------------EEEEEEEECCC--CcCCccchHHCC
Confidence 4788998875431 00 12899999995 689999999873
No 198
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.00011 Score=64.15 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=31.2
Q ss_pred CccccccccccccCcCCCCCcccccccchhhhhhhhhhcCcccccccccchHhHH
Q 001302 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFL 154 (1104)
Q Consensus 100 ~~iekil~wr~~p~~~~~~~~~~~~~~~~~~~eylVKwk~~Sy~h~~W~~~~~l~ 154 (1104)
-.|++||+.|.... ...+|||||+|+++-+|||+|++.|.
T Consensus 24 yeVE~Ild~R~~~~---------------g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 24 YEVERIVDKRKNKK---------------GKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp EEEEEEEEEEECTT---------------SCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred EEEEEEEEeEECCC---------------CeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 35899998764211 01489999999999999999999874
No 199
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.78 E-value=0.011 Score=74.23 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=94.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p~~~vv 362 (1104)
..|.+.|.+++..+. .+.-.++.-..|+|||.++..++..+......++||++|+... .+-...+... +++++
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vv 428 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT--GLKVV 428 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT--TCCEE
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh--CcceE
Confidence 468999999997653 3456788999999999999888888876555699999997655 3433444432 33433
Q ss_pred EEecChhHH------------HHHHHhhhcCCCCch--hh--hccccCccc-------cc-----cccccccccEEEccH
Q 001302 363 MYVGTSQAR------------NIIREYEFYFPKNPK--KV--KKKKSGQVV-------SE-----SKQDRIKFDVLLTSY 414 (1104)
Q Consensus 363 ~~~g~~~~r------------~~i~~~e~~~~~~~~--~~--~~~~~~~~~-------~~-----~~~~~~~~dVvitsy 414 (1104)
-+ |..... ..+..+ ..... +. .+...+... .. ...-....+||++|.
T Consensus 429 Rl-g~~~r~~i~~~~~~~tlh~~~~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~ 503 (800)
T 2wjy_A 429 RL-CAKSREAIDSPVSFLALHNQIRNM----DSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC 503 (800)
T ss_dssp EC-CCGGGGGCCCTTGGGBHHHHHHTC----TTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEET
T ss_pred ee-cccchhhhcchhhhhhHHHHHHcC----ccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEch
Confidence 22 222100 000000 00000 00 000000000 00 000112467888887
Q ss_pred HHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCC
Q 001302 415 EMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1104)
Q Consensus 415 e~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1104)
..+.. ..+....|++||||||..+-... ..+..+....+++|-|=|.|-
T Consensus 504 ~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 504 VGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 66542 34566789999999997654322 122223345789999998763
No 200
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.72 E-value=0.00029 Score=61.50 Aligned_cols=49 Identities=18% Similarity=0.573 Sum_probs=35.6
Q ss_pred cccccccccCC----CCeeecCCCCCccccCcCCCCCCCC-CCCCCccCcCCCCC
Q 001302 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~~ 99 (1104)
...+| +|+.. +.++.||.|...||..|+.-..... ....|+|+.|....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34667 88874 3499999999999999994322111 13689999998643
No 201
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.012 Score=74.11 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=93.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH-HHHHHHHHHHcCCCeEE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVV 362 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l-~qW~~E~~~~~p~~~vv 362 (1104)
..|.+.|.+++..+. .+.-.++.-..|+|||.++..++..+......++||++|.+.. .+-..-+... +++++
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~--g~~il 432 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL--GLKVV 432 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT--TCCEE
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh--CccEE
Confidence 468999999997662 3455788899999999998888887765444699999997654 4444545543 23333
Q ss_pred EEecChhH------------HHHHHHhhhcCCCCc-hhhh--ccccCcc-------cc-----ccccccccccEEEccHH
Q 001302 363 MYVGTSQA------------RNIIREYEFYFPKNP-KKVK--KKKSGQV-------VS-----ESKQDRIKFDVLLTSYE 415 (1104)
Q Consensus 363 ~~~g~~~~------------r~~i~~~e~~~~~~~-~~~~--~~~~~~~-------~~-----~~~~~~~~~dVvitsye 415 (1104)
-+ |.... ...+.. ..... .... +...+.. +. .........+||++|..
T Consensus 433 R~-g~~~r~~i~~~~~~~tl~~~~~~----~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~ 507 (802)
T 2xzl_A 433 RL-TAKSREDVESSVSNLALHNLVGR----GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCV 507 (802)
T ss_dssp EC-CCGGGTTSCCTTGGGBHHHHHHT----TCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETT
T ss_pred ee-cccchhhhcchhhhhhHHHHHHh----hcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechh
Confidence 22 22110 000000 00000 0000 0000000 00 00001124678888876
Q ss_pred HHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCC
Q 001302 416 MINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQN 469 (1104)
Q Consensus 416 ~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgTPlqN 469 (1104)
.+.. ..+.. .|++||||||+.+.... ..+..+....+++|-|=|.|-
T Consensus 508 ~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 508 GAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp GGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 6542 23445 89999999998764322 122223345789999998763
No 202
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=96.59 E-value=0.00055 Score=63.00 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=38.5
Q ss_pred cchhhh------hhhccCCccceeeeeeeeeccccccccccCCccc----cHHHHHHHHH
Q 001302 192 TTVDRI------LACRGEDDEKEYLVKYKELSYDECYWEYESDISA----FQPEIERFIK 241 (1104)
Q Consensus 192 ~~verI------i~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~----~~~~i~~~~~ 241 (1104)
..||.| ++.|...+..+|||||+|-++.++|||....+.. ....++.|..
T Consensus 37 Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~k 96 (115)
T 2b2y_C 37 YAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKK 96 (115)
T ss_dssp HHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC
T ss_pred EEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHH
Confidence 368886 8888878899999999999999999998765421 1235666654
No 203
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.57 E-value=0.00092 Score=56.45 Aligned_cols=42 Identities=21% Similarity=0.766 Sum_probs=31.2
Q ss_pred cccccccCC---CCeeecCC--CCCccccCcCCCCCCCCC------CCCCccCcCC
Q 001302 52 DSCQACGES---ENLMSCDT--CTYAYHAKCLVPPLKAPP------SGSWRCPECV 96 (1104)
Q Consensus 52 ~~C~~C~~~---~~l~~C~~--C~~~~H~~Cl~p~l~~~p------~~~W~C~~C~ 96 (1104)
..| +|+.. |.|+.|+. |...||..|+. +...| ...|+|+.|.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCcc
Confidence 567 78754 56999995 99999999993 32221 2479999996
No 204
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=96.56 E-value=0.00038 Score=70.42 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=36.4
Q ss_pred cchhhhhhhccCC-------------------ccceeeeeeeeeccccccccccCCccccHHH--HHHHHH
Q 001302 192 TTVDRILACRGED-------------------DEKEYLVKYKELSYDECYWEYESDISAFQPE--IERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~-------------------~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~--i~~~~~ 241 (1104)
-.||.||+||... +..+|||||+|.+|.+|||+.+..+..+... ++.|..
T Consensus 13 ~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~k 83 (177)
T 2h1e_A 13 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK 83 (177)
T ss_dssp CCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHH
T ss_pred CcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHH
Confidence 3577888887432 1369999999999999999998766544433 666654
No 205
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.45 E-value=0.00047 Score=54.91 Aligned_cols=41 Identities=22% Similarity=0.640 Sum_probs=30.7
Q ss_pred cccccCCC----CeeecC-CCCCccccCcCCCCCCCCC--CCCCccCcCC
Q 001302 54 CQACGESE----NLMSCD-TCTYAYHAKCLVPPLKAPP--SGSWRCPECV 96 (1104)
Q Consensus 54 C~~C~~~~----~l~~C~-~C~~~~H~~Cl~p~l~~~p--~~~W~C~~C~ 96 (1104)
|.+|+... .++.|| .|...||..|+ .++..+ ...|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 56777642 399999 89999999999 444322 3789999994
No 206
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.44 E-value=0.00057 Score=58.97 Aligned_cols=47 Identities=23% Similarity=0.666 Sum_probs=34.5
Q ss_pred cccccccccCC----CCeeecCCCCCccccCcCCCCCCCCC-CCCCccCcCCC
Q 001302 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~ 97 (1104)
...+| +|+.. +.++.|+.|...||..|+.......+ .+.|+|+.|..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 34567 78764 35999999999999999944333222 26799999974
No 207
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.26 E-value=0.0014 Score=52.12 Aligned_cols=44 Identities=20% Similarity=0.582 Sum_probs=33.5
Q ss_pred cccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 52 DSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 52 ~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
.+| +|+.. +.++.|+.|...||..|+.......| +.|+|+.|..
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp BCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred eEE-EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 345 56653 46999999999999999965544343 7999999964
No 208
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=96.21 E-value=0.0013 Score=67.20 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=36.6
Q ss_pred chhhh------hhhccCCccceeeeeeeeeccccccccccCCcc----ccHHHHHHHHH
Q 001302 193 TVDRI------LACRGEDDEKEYLVKYKELSYDECYWEYESDIS----AFQPEIERFIK 241 (1104)
Q Consensus 193 ~verI------i~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~----~~~~~i~~~~~ 241 (1104)
.|+.| ++.|...+..+|||||+|.+|.+|||+.+..+. .....++.|..
T Consensus 38 ~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~k 96 (187)
T 2b2y_A 38 AVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKK 96 (187)
T ss_dssp HHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHH
T ss_pred EeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHH
Confidence 67777 466666678899999999999999999876553 12345677765
No 209
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.17 E-value=0.022 Score=69.58 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC--CC-CceEEEeCcccHHHHH-HHHHHHcCCCeEE
Q 001302 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RI-SPHLVVAPLSTLRNWE-REFATWAPQMNVV 362 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~--~~-~p~LIV~P~s~l~qW~-~E~~~~~p~~~vv 362 (1104)
-+.|..++.-+ ..+...++.-..|+|||.++..++..+... .. .++++++|+.....-. ..+..+...+.+.
T Consensus 151 ~~~Q~~Ai~~~----l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 57899998755 356778999999999998877777766532 22 3899999986664433 3333221101000
Q ss_pred EEecChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccccc-EEEccHHHHhhccccccCCcceEEEEcCccccc
Q 001302 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFD-VLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1104)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-Vvitsye~l~~~~~~l~~~~w~~vIvDEaHrlk 441 (1104)
...+. ..+.. ....+ ++-++...............+++||||||+.+.
T Consensus 227 -----~~~~~-------~~~~~-------------------~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~ 275 (608)
T 1w36_D 227 -----DEQKK-------RIPED-------------------ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 (608)
T ss_dssp -----SCCCC-------SCSCC-------------------CBTTTSCC-----------CTTSCCSCSEEEECSGGGCB
T ss_pred -----HHHHh-------ccchh-------------------hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC
Confidence 00000 00000 00000 000011100000111123468899999999664
Q ss_pred CcccHHHHHHHhcccccEEEEecCCCCCCHH
Q 001302 442 NKDSKLFSSLKQYSTRHRVLLTGTPLQNNLD 472 (1104)
Q Consensus 442 n~~s~~~~~l~~l~~~~rllLTgTPlqN~~~ 472 (1104)
...+...+..+....+++|.|-|-|-.+.
T Consensus 276 --~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 276 --LPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp --HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred --HHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 23345556667777899999998775543
No 210
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.89 E-value=0.031 Score=63.78 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=85.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CCCceEEEeCcccH-HHHHHHHHHHc---CC
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWEREFATWA---PQ 358 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~~p~LIV~P~s~l-~qW~~E~~~~~---p~ 358 (1104)
..|.|||...+..+. ..+..++.-.-+.|||..+.+++.+.... ....+++++|..-. ..+-+.+..+. |.
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 479999999877652 23457888899999999877766654333 33478999996432 33335555543 22
Q ss_pred -CeEEEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCc
Q 001302 359 -MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1104)
Q Consensus 359 -~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEa 437 (1104)
+.-.+... ....+... ....+.+ +++ ....+.....+++|+||+
T Consensus 238 ll~~~~~~~--------------------------~~~~I~f~--nGs~i~~-lsa------~~~slrG~~~~~viiDE~ 282 (385)
T 2o0j_A 238 FLQPGIVEW--------------------------NKGSIELD--NGSSIGA-YAS------SPDAVRGNSFAMIYIEDC 282 (385)
T ss_dssp TTSCCEEEE--------------------------CSSEEEET--TSCEEEE-EEC------SHHHHHTSCCSEEEEESG
T ss_pred hhhhhhccC--------------------------CccEEEeC--CCCEEEE-EEC------CCCCccCCCCCEEEechh
Confidence 10000000 00000000 0011112 221 233455667789999999
Q ss_pred ccccCcccHHHHHHHh-cc--cccEEEEecCCCCCCHHHHHHHHH
Q 001302 438 HRLKNKDSKLFSSLKQ-YS--TRHRVLLTGTPLQNNLDELFMLMH 479 (1104)
Q Consensus 438 Hrlkn~~s~~~~~l~~-l~--~~~rllLTgTPlqN~~~EL~~ll~ 479 (1104)
|.+++. ..++.++.. +. .+.++++++||-..+ -++.+..
T Consensus 283 a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 283 AFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp GGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHH
T ss_pred hhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHH
Confidence 999873 233444433 22 357899999996543 4444443
No 211
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.73 E-value=0.0013 Score=77.25 Aligned_cols=48 Identities=21% Similarity=0.678 Sum_probs=36.3
Q ss_pred cccccccccccCC----CCeeecCCCCCccccCcCCCCCCCCCC---CCCccCcCCCC
Q 001302 48 DAKDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPS---GSWRCPECVSP 98 (1104)
Q Consensus 48 ~~~~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~p~---~~W~C~~C~~~ 98 (1104)
+....+| +|+.. +.++.||.|...||..|+ .+...+. +.|+|+.|...
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCC
Confidence 3445677 88864 459999999999999999 4444332 67999999854
No 212
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.59 E-value=0.0029 Score=64.16 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=34.9
Q ss_pred cccccccCC---C----CeeecCCCCCccccCcCCCCCC------CCC-CCCCccCcCCCCCC
Q 001302 52 DSCQACGES---E----NLMSCDTCTYAYHAKCLVPPLK------APP-SGSWRCPECVSPLN 100 (1104)
Q Consensus 52 ~~C~~C~~~---~----~l~~C~~C~~~~H~~Cl~p~l~------~~p-~~~W~C~~C~~~~~ 100 (1104)
.+|.+|+.. + .++.||.|...||..|....-. ..| ...|+||.|....+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 468888753 3 3999999999999999943211 112 24799999987543
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.10 E-value=0.057 Score=55.04 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.-.++.-.||.|||..++.++..+...+ .+++++.|.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeec
Confidence 3467888999999999888877665443 378888875
No 214
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.0035 Score=79.25 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.2
Q ss_pred cchhhhhhhccC-------------------CccceeeeeeeeeccccccccccCCcc
Q 001302 192 TTVDRILACRGE-------------------DDEKEYLVKYKELSYDECYWEYESDIS 230 (1104)
Q Consensus 192 ~~verIi~~r~~-------------------~~~~~yLVKWkgL~Y~~~tWe~~~~~~ 230 (1104)
..||+||+||.. .+..+|||||+|.+|.+||||.++.+.
T Consensus 38 ~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 38 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp CBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred CchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHh
Confidence 378999999966 456799999999999999999887653
No 215
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.02 E-value=0.072 Score=64.78 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=82.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCcc-cHHHHHHHHHHHcCCCeE
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLS-TLRNWEREFATWAPQMNV 361 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~s-~l~qW~~E~~~~~p~~~v 361 (1104)
..|.|||...+..+ + ..+..++.-.-|.|||..+.+++.+......+ .+++++|.. ........+..+.-....
T Consensus 162 ~~l~p~Q~~i~~~l---~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 162 VQLRDYQRDMLKIM---S-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCCHHHHHHHHHH---H-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred CcCCHHHHHHHHhh---c-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 57999999987655 2 24557888899999998876655554443334 899999953 333344566655421100
Q ss_pred EEEecChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCccccc
Q 001302 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLK 441 (1104)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlk 441 (1104)
+ .... ........+.. .....+.++-.+.. .+.....+++|+||+|..+
T Consensus 238 -----------------~-~~~~----~~~~~~~~i~~--~nGs~i~~~s~~~~-------~lrG~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 238 -----------------F-LQPG----IVEWNKGSIEL--DNGSSIGAYASSPD-------AVRGNSFAMIYIEDCAFIP 286 (592)
T ss_dssp -----------------T-TSCC----EEEECSSEEEE--TTSCEEEEEECCHH-------HHHHSCCSEEEEETGGGCT
T ss_pred -----------------h-hccc----cccCCccEEEe--cCCCEEEEEeCCCC-------CccCCCcceEEEehhccCC
Confidence 0 0000 00000000000 00111222222222 3344557899999999997
Q ss_pred CcccHHHHHHHhc-c--cccEEEEecCCCCC
Q 001302 442 NKDSKLFSSLKQY-S--TRHRVLLTGTPLQN 469 (1104)
Q Consensus 442 n~~s~~~~~l~~l-~--~~~rllLTgTPlqN 469 (1104)
+.. .+..++... . ...++++++||-..
T Consensus 287 ~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 287 NFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp THH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred chh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 742 444454432 2 34789999999544
No 216
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.85 E-value=0.0093 Score=69.28 Aligned_cols=36 Identities=28% Similarity=0.578 Sum_probs=27.8
Q ss_pred CeeecCCCCCccccCcCCCCCCC-CCCCCCccCcCCC
Q 001302 62 NLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1104)
Q Consensus 62 ~l~~C~~C~~~~H~~Cl~p~l~~-~p~~~W~C~~C~~ 97 (1104)
.++.||.|...||..|+.-.-.. ...+.|+||.|..
T Consensus 57 ~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 57 QWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp SEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 49999999999999999433222 2236899999985
No 217
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.79 E-value=0.0068 Score=59.14 Aligned_cols=60 Identities=17% Similarity=0.459 Sum_probs=45.7
Q ss_pred ccccccccccccCCCCeeecC--CCCCccccCcCCCCCCC------CCCCCCccCcCCCCCCcccccccc
Q 001302 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVSPLNDIDKILDC 108 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~l~~------~p~~~W~C~~C~~~~~~iekil~w 108 (1104)
+|....+|.+|+.||+|+.|+ .|+++|-..|+.--+.. ...+.|.|--|... +...+|..
T Consensus 75 eDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~--~l~~ll~~ 142 (159)
T 3a1b_A 75 DDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK--GTYGLLRR 142 (159)
T ss_dssp TTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS--CEETTEEB
T ss_pred CCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc--cHHHHhhh
Confidence 345578999999999999999 89999999998544432 34688999999843 34445543
No 218
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=94.40 E-value=0.007 Score=50.32 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=33.6
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERF 239 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~ 239 (1104)
+++|+|++....++...|||||+|.+-.+..|..+... .++..+-+|
T Consensus 13 le~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~-~~PqlVI~f 59 (65)
T 3kup_A 13 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANM-KCPQIVIAF 59 (65)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHH-HCHHHHHHH
T ss_pred CCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHh-hChHHHHHH
Confidence 58999999998889999999999977666666543322 244444444
No 219
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.38 E-value=0.13 Score=53.44 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=27.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
-++.-+||.|||..++..+..+...+ .++||+.|.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g-~kVli~k~~ 65 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK-QHAIVFKPC 65 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 34788999999999888877665443 488888884
No 220
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.34 E-value=0.19 Score=61.59 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CC--CceEEEeCcccH-HHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLSTL-RNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s~l-~qW~~E~~~~~ 356 (1104)
.|.+.|.++|. ...+..++-...|+|||.+.+.-+.++... +. ..+|+|+++... .+-...+....
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 58899999985 345667777789999999999988888865 32 479999986554 44555565553
No 221
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=94.14 E-value=0.021 Score=52.48 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=35.6
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCcc
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRC 92 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C 92 (1104)
.-.|.+|+.... ++|..|+++||..|+.++|...+.+.|+|
T Consensus 58 ~c~C~~C~k~~~-~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 58 WHQCDECSSAAV-SFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp GGBCTTTCSBCC-EECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCCCcCCCCCC-cCcCCCCcchhhhccCCcceecCCCCcee
Confidence 335778877664 89999999999999999999999999998
No 222
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.09 E-value=0.07 Score=61.66 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=68.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc-ccHHHHHHHHHHHcCCCeEEEEecChhHHHHHHHhhhcCCCCc
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNP 385 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~-s~l~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~ 385 (1104)
.++.-..|.|||.....++. ..+.||++|. .+...|++.+.+-. .
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~----------~------------------ 209 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASG----------I------------------ 209 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTS----------C------------------
T ss_pred EEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcC----------c------------------
Confidence 56788999999987655442 1578999996 44567877763210 0
Q ss_pred hhhhccccCccccccccccccccEEEccHHHHhhccccccCCcceEEEEcCcccccCcccHHHHHHHhcccccEEEEecC
Q 001302 386 KKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGT 465 (1104)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~dVvitsye~l~~~~~~l~~~~w~~vIvDEaHrlkn~~s~~~~~l~~l~~~~rllLTgT 465 (1104)
...-+.-+.|++.+............++||||||..+ +...+...+..+.. .+++|.|=
T Consensus 210 ------------------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 210 ------------------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ------------------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEEC
T ss_pred ------------------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecC
Confidence 0001122567777765544444456899999999865 22333333333334 89999999
Q ss_pred CCCCC
Q 001302 466 PLQNN 470 (1104)
Q Consensus 466 PlqN~ 470 (1104)
|-|-.
T Consensus 269 ~~Qlp 273 (446)
T 3vkw_A 269 TQQIP 273 (446)
T ss_dssp TTSCC
T ss_pred ccccc
Confidence 86643
No 223
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.94 E-value=0.0051 Score=71.09 Aligned_cols=44 Identities=23% Similarity=0.679 Sum_probs=33.3
Q ss_pred cccccccCC----CCeeecCCCCCccccCcCCCCCCCCC---CCCCccCcCCCC
Q 001302 52 DSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP---SGSWRCPECVSP 98 (1104)
Q Consensus 52 ~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~p---~~~W~C~~C~~~ 98 (1104)
.+| +|+.. +.++.||.|...||..|+ .+...+ .+.|+|+.|...
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccc
Confidence 456 77763 559999999999999999 444322 267999999853
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.91 E-value=0.23 Score=52.17 Aligned_cols=39 Identities=26% Similarity=0.089 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.+.-.++.-+||.|||..++.++..+...+ .+++++.|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEEec
Confidence 344467789999999999988888775543 367777763
No 225
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.45 E-value=0.39 Score=53.72 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHhhcCCC---cEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 286 L~~yQ~~gv~wl~~~~~~~~---~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
++|+|.+.+..|.....+++ ..++.-+.|+|||..+..++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 67999999888877766654 36889999999999999999988654
No 226
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=92.89 E-value=0.014 Score=65.32 Aligned_cols=51 Identities=25% Similarity=0.645 Sum_probs=41.5
Q ss_pred ccccccccccccCCCCeeecC--CCCCccccCcCCCCCCC------CCCCCCccCcCCC
Q 001302 47 IDAKDDSCQACGESENLMSCD--TCTYAYHAKCLVPPLKA------PPSGSWRCPECVS 97 (1104)
Q Consensus 47 ~~~~~~~C~~C~~~~~l~~C~--~C~~~~H~~Cl~p~l~~------~p~~~W~C~~C~~ 97 (1104)
+|..+.+|..|+.+|+|++|+ .|+++|-..|+.--+.. ...+.|.|-.|..
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 355678999999999999999 99999999998654422 2247899999984
No 227
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.63 E-value=0.24 Score=50.75 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=27.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.=.++.-.||.|||..++..+..+...+ .+++|+.|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEec
Confidence 3356788999999998888877765433 488888875
No 228
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.39 E-value=0.19 Score=42.61 Aligned_cols=48 Identities=10% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHcCCCC-cchhhhchhccCCCHHHHHHHHHHHHHh
Q 001302 968 GFSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~-~~~~~i~~~l~~Ks~~ev~~y~~~f~~~ 1016 (1104)
.||..+-+.|.+++.+||.+. ..|+.||+.| +||.+||+++.+.+.+.
T Consensus 10 ~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 477888899999999999653 4599999988 89999999987766544
No 229
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=92.36 E-value=0.019 Score=49.00 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=36.3
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCc-cccHHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDI-SAFQPEIERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~-~~~~~~i~~~~~ 241 (1104)
+.+|+||+.+..++...|||||+| +++++|.....+ ..++..+-+|.+
T Consensus 16 l~~ekI~g~~~~~Gel~fLvkWkg--~d~~dlVpa~~a~~k~Pq~VI~FYE 64 (74)
T 2fmm_A 16 LEPERIIGATDSSGELMFLMKWKN--SDEADLVPAKEANVKCPQVVISFYE 64 (74)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETT--CSCCEEEEHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEEEcCCCcEEEEEEECC--CCcccEEEHHHHhhhChHHHHHHHH
Confidence 578999999988899999999998 455888866544 245556656554
No 230
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=92.15 E-value=0.014 Score=49.72 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=30.8
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~ 240 (1104)
+++|+|++....++...|||||+|.+-.+..+..+... .++..+-+|.
T Consensus 23 le~EkIlg~t~~~Gel~fLVKWKg~~e~dlVpa~ean~-k~PqlVI~FY 70 (75)
T 3i3c_A 23 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANV-KCPQIVIAFY 70 (75)
T ss_dssp CCEEEEEEEEC---CCEEEEEETTSSCEEEEEHHHHHH-HCHHHHHHHH
T ss_pred CCeeEEeeEEccCCcEEEEEEECCCChhceEEHHHHhh-hChHHHHHHH
Confidence 58999999998889999999999976665555433221 2444444443
No 231
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.02 E-value=1.3 Score=48.88 Aligned_cols=41 Identities=12% Similarity=-0.083 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1104)
.+.+.+|.-+.|+|||..+-+++..+... ..+++.+-....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHH
Confidence 34678999999999999988888777654 235655544333
No 232
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=91.93 E-value=0.042 Score=51.59 Aligned_cols=35 Identities=31% Similarity=0.755 Sum_probs=28.3
Q ss_pred eeecCCCCCccccCcCCCCCCCCCC----CCCccCcCCC
Q 001302 63 LMSCDTCTYAYHAKCLVPPLKAPPS----GSWRCPECVS 97 (1104)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~ 97 (1104)
|+.|+.|...||..|+.++....+. +.|.||.|..
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 8999999999999999887654332 3599999985
No 233
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=91.92 E-value=0.021 Score=50.02 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=36.1
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHH-HHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPE-IERFIK 241 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~-i~~~~~ 241 (1104)
+++|+||+....+|...|||||+|.+--+..|..+... .++.. |+-|.+
T Consensus 26 le~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~-k~PqlVI~FYEe 75 (87)
T 3p7j_A 26 LEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANE-KIPRMVIHFYEE 75 (87)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhh-hChHHHHHHHHH
Confidence 58999999988889999999999988777777654432 23444 444454
No 234
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=91.89 E-value=0.024 Score=48.81 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=33.8
Q ss_pred cchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHH
Q 001302 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (1104)
Q Consensus 192 ~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~ 240 (1104)
+++|+||+....+|...|||||+|.+-.+..+..+... .++..+-+|.
T Consensus 10 le~EkI~g~~~~~Gel~fLvKWKg~~~~dlVpa~ean~-k~PqlVI~FY 57 (78)
T 3q6s_A 10 LEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANV-KCPQVVISFY 57 (78)
T ss_dssp CCEEEEEEEECTTSSCEEEEEETTCSCEEEEEHHHHHH-HSHHHHHHHH
T ss_pred CCceEEeeEEcCCCcEEEEEEECCCChhheEeHHHHHh-hChHHHHHHH
Confidence 58999999998889999999999987666555433322 2444444443
No 235
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.51 E-value=1 Score=49.86 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=27.6
Q ss_pred cceEEEEcCccccc-C-cccHHHHHHHhcccccEEEEecCCCC
Q 001302 428 KWQCMIVDEGHRLK-N-KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1104)
Q Consensus 428 ~w~~vIvDEaHrlk-n-~~s~~~~~l~~l~~~~rllLTgTPlq 468 (1104)
...+|||||+|.+. . ....+...+.......++++|+++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 45789999999995 2 22334444555556778888887654
No 236
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.47 E-value=0.11 Score=57.11 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCC---CceEEEeCc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVAPL 342 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~---~p~LIV~P~ 342 (1104)
+.+.+|.-+.|+|||..+-+++..+..... .+++.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 446899999999999999888887765432 255555443
No 237
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=91.07 E-value=0.073 Score=44.56 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHcCCCC-cchhhhchhccCCCHHHHHHHHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGILFL 1014 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~-~~~~~i~~~l~~Ks~~ev~~y~~~f~ 1014 (1104)
+|..+-+.|-+|+.+|+.+. ..|+.||+.+.+||.+||+++.++=+
T Consensus 23 WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp CCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC---
T ss_pred CCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHHhh
Confidence 66667789999999998753 35899999999999999998877643
No 238
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.89 E-value=0.53 Score=49.37 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=26.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.=-++.-.||.|||..+|..+...... ..+++|+-|.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeec
Confidence 335678899999998888877665433 2488888874
No 239
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.63 E-value=2.3 Score=43.30 Aligned_cols=27 Identities=41% Similarity=0.706 Sum_probs=22.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.+.+|.-+.|+|||..+-.++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 358999999999999988887776543
No 240
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=90.47 E-value=0.18 Score=50.24 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.3
Q ss_pred cccccccCCCC----eeecCCCCCccccCcCCCCCCCCCCCC----CccCcCCC
Q 001302 52 DSCQACGESEN----LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECVS 97 (1104)
Q Consensus 52 ~~C~~C~~~~~----l~~C~~C~~~~H~~Cl~p~l~~~p~~~----W~C~~C~~ 97 (1104)
.+| -|+..++ +|.|+.|.+.||..|+..+....-.++ ..|..|..
T Consensus 6 ~yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 6 GSV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred eEE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 356 4676655 899999999999999965543322233 46999975
No 241
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=90.31 E-value=0.66 Score=42.59 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR 1007 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~ 1007 (1104)
.||..+-..++.++.+||.. +|..||..|.+.|..+++
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~~Rt~~qcr 40 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAK--DWIRISQLMITRNPRQCR 40 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSS--CHHHHHHHTTTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC--CHHHHhhhcCCCCHHHHH
Confidence 37777778999999999964 478899988888887776
No 242
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.11 E-value=0.36 Score=39.44 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYG 1010 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~ 1010 (1104)
.-||.-+.+.|..++.+||. +|..||..|.+||..++..|-
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk---~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPK---NFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTT---CHHHHHHHCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CHHHHHHHcCCCCHHHHHHHH
Confidence 34888888999999999994 478899999999999998764
No 243
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=89.99 E-value=0.81 Score=41.75 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=32.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR 1007 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~ 1007 (1104)
.-||.-+-..+++++.+||.. +|..||..|.+.|..+++
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l~~Rt~~qcr 43 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPK--RWSVIAKHLKGRIGKQCR 43 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTT--CHHHHHTTSTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC--cHHHHhhhhcCCCHHHHH
Confidence 457888888999999999974 478999999888888776
No 244
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.77 E-value=2.9 Score=41.26 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 556889999999999999888887754
No 245
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.10 E-value=0.54 Score=38.68 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchh-ccCCCHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPR-LKQKSYEEIREYG 1010 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~-l~~Ks~~ev~~y~ 1010 (1104)
.-+|.-+.+.|.+++.+||. ++..|++. |..||..+|.+|-
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGK---df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGK---NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCS---CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCc---cHHHHHHHHcCCCcHHHHHHHH
Confidence 45888999999999999997 36789985 8999999999775
No 246
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=88.01 E-value=0.81 Score=40.72 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHHcCCCC-cchhhhchhccCCCHHHHHHHHHHHHHh
Q 001302 968 GFSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~-~~~~~i~~~l~~Ks~~ev~~y~~~f~~~ 1016 (1104)
.||..+=+.|.+++.+||.+. ..|..||+.|.++|.+||+.....+.+.
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 477778889999999999652 4599999999999999999776666544
No 247
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.92 E-value=1.5 Score=45.38 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=26.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.=-++.-+||.|||...+..+..+...+ .+++|+.|.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~ 65 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPA 65 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEec
Confidence 3346788899999987777665554433 478888884
No 248
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.92 E-value=3.3 Score=40.91 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466899999999999999888887754
No 249
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=87.78 E-value=1.3 Score=42.09 Aligned_cols=39 Identities=13% Similarity=0.386 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR 1007 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~ 1007 (1104)
..||..+-..+++++.+||.. +|..||..|.+.|..+++
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~l~~Rt~~qcr 66 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPK--RWSDIAKHLKGRIGKQCR 66 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSC--CHHHHHHHSSSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC--CHHHHHHHhcCCcHHHHH
Confidence 458888888999999999964 478999989888888776
No 250
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.78 E-value=0.68 Score=48.26 Aligned_cols=29 Identities=17% Similarity=-0.063 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
.+.+.+|.-+.|+|||..+-+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46778999999999999988887766544
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.66 E-value=2.1 Score=46.95 Aligned_cols=25 Identities=40% Similarity=0.752 Sum_probs=21.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+.+|.-+.|+|||..+-+++..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 5889999999999999888877643
No 252
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.52 E-value=0.73 Score=39.08 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=38.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCC-cchhhhchhccCCCHHHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGIL 1012 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~-~~~~~i~~~l~~Ks~~ev~~y~~~ 1012 (1104)
..||.-+=..|++++.+||.+. ..|..||+.|.++|..+++..-..
T Consensus 19 ~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 4588888899999999999642 358999999999999999966443
No 253
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.42 E-value=2.2 Score=44.00 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
++..++.+.............+|.-+.|+|||..+-.++..+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555555333322222235789999999999988877776654
No 254
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.31 E-value=2.3 Score=43.34 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
.=.++.-.||+|||...+-.+......+ .+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 3356788999999976665555544333 477888774
No 255
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.93 E-value=2.2 Score=46.94 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHH
Q 001302 290 QLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLAS 327 (1104)
Q Consensus 290 Q~~gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~ 327 (1104)
|.+.+..|.....++. ..++.-+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3344545544444443 5788999999999988887764
No 256
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=86.86 E-value=0.69 Score=45.72 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhhhcCCCCccccCCCCCCccchhHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAV 1047 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~~~~i~k~~~k~~~~~~ri~~ 1047 (1104)
.||.-+-..+.+++.+||..+ |..||..|.+.|..+++.- |.++..+ .+.++....++-.
T Consensus 8 ~Wt~eED~~L~~~v~~~g~~~--W~~Ia~~l~~Rt~~qcr~R----w~~~l~p---------~~~~~~Wt~eEd~----- 67 (159)
T 1h89_C 8 RWTREEDEKLKKLVEQNGTDD--WKVIANYLPNRTDVQCQHR----WQKVLNP---------ELIKGPWTKEEDQ----- 67 (159)
T ss_dssp -------------------------------------CHHHH----HHTTTCT---------TCCCSCCCHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHhCCCC--HHHHHHHcCCCCHHHHHHH----HHHccCC---------CcCCCCCChHHHH-----
Confidence 455556667888999999644 7889999988888887732 3332211 2333434433321
Q ss_pred HHHHHHHHHhhcC---------CCCCCCcccccccccC----CCCCCcccChhhhHHHHHHhhhccc
Q 001302 1048 LLLIRDKVKFLSQ---------KPGTPLFTDDIYLRYP----GLRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1048 ~~ll~~kv~~~~~---------~p~~~~~~~~~~~~~~----~~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
+|.+-|+.|.. -|...- .+.+.+|. +......||+|||..||.++.+||-
T Consensus 68 --~L~~~v~~~g~~~W~~Ia~~l~~Rt~--~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 68 --RVIKLVQKYGPKRWSVIAKHLKGRIG--KQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp --HHHHHHHHHCSCCHHHHHHTSTTCCH--HHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred --HHHHHHHHhCcccHHHHHHHcCCCCH--HHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 11111222221 111100 11122221 1224468999999999999999995
No 257
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=86.63 E-value=0.48 Score=48.61 Aligned_cols=47 Identities=13% Similarity=0.336 Sum_probs=39.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHh
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~ 1016 (1104)
.-||+.+.+.|++++.+||+ +|..||..|.+||..+|+.|.-.|.++
T Consensus 134 ~~WTeEE~~lFleAl~kYGK---DW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 134 ARWTTEEQLLAVQAIRKYGR---DFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHSS---CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCc---CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34899999999999999996 478999999999999999876554444
No 258
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.78 E-value=1.2 Score=37.69 Aligned_cols=49 Identities=14% Similarity=0.438 Sum_probs=42.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhh
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHIT 1018 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~ 1018 (1104)
..||..+-..|++++.+||. +|..||..|.++|..+++.+...++.+..
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR---RWTKISKLIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS---CHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCc---CHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45888888999999999997 68999999999999999998777766543
No 259
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.67 E-value=2.5 Score=49.05 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCC-ceEEEeCc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL 342 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~-p~LIV~P~ 342 (1104)
..+.+|.-+.|+|||..+-++...+.....+ +++.+-..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4578999999999999988887776554323 55554433
No 260
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.41 E-value=0.89 Score=38.22 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=38.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchh-ccCCCHHHHHHHHHHHHHh
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPR-LKQKSYEEIREYGILFLTH 1016 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~-l~~Ks~~ev~~y~~~f~~~ 1016 (1104)
.-+|.-+.+.|..++.+||. ++..|+++ |..||..+|.+|-= .|++
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK---df~~I~~~~v~~Kt~~~~v~fYY-~wKk 55 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK---DFNDIRQDFLPWKSLTSIIEYYY-MWKT 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS---CHHHHHHTTCSSSCHHHHHHHHH-HHHT
T ss_pred CCCCHHHHHHHHHHHHHhCc---cHHHHHHHHcCCCCHHHHHHHHH-hhcC
Confidence 35788899999999999997 35789985 89999999999876 4554
No 261
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.30 E-value=0.92 Score=50.30 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1104)
..+.+|.-+.|+|||..|-+++..+ ..+++.|....+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~l 87 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDL 87 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHHH
Confidence 4568999999999999988877654 235555544433
No 262
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.22 E-value=1.6 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHh
Q 001302 305 THVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~ 329 (1104)
.+.+|.-+.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999888877764
No 263
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.94 E-value=1.1 Score=37.89 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHHcCCCC-cchhhhchhccCCCHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIRE 1008 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~-~~~~~i~~~l~~Ks~~ev~~ 1008 (1104)
.+|.-+-+.|.+|+..|+.+. ..|+.||+.+.+||.+|+++
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~ 51 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQR 51 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHH
Confidence 467777789999999998642 35999999999999999994
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.83 E-value=1.9 Score=48.42 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHhh---cCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLNFLRFSW---SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~---~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
++.+++.+.-+.... ..+.+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666553222222 34567899999999999998887776643
No 265
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.51 E-value=0.81 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
..+.+|.-+.|+|||..|-+++..+ ..+++.|...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSS 118 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeHH
Confidence 4578999999999999998888766 1355555433
No 266
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.19 E-value=2 Score=49.01 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=36.5
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHH
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~ 352 (1104)
....+|++|.-+.|+|||..|-+++..+ ..|++.|....++..|.-|-
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSCSSTTHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhccccchH
Confidence 3456889999999999999988887764 23788888777776665443
No 267
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=84.14 E-value=0.31 Score=46.72 Aligned_cols=37 Identities=27% Similarity=0.572 Sum_probs=27.6
Q ss_pred eeecCCCCCccccCcCCCCC------CCCC-CCCCccCcCCCCC
Q 001302 63 LMSCDTCTYAYHAKCLVPPL------KAPP-SGSWRCPECVSPL 99 (1104)
Q Consensus 63 l~~C~~C~~~~H~~Cl~p~l------~~~p-~~~W~C~~C~~~~ 99 (1104)
|+.||.|..+||..|..-.- ...| ...|.||.|....
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 78999999999999984321 2223 5579999998643
No 268
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=84.05 E-value=3.1 Score=39.25 Aligned_cols=38 Identities=16% Similarity=0.416 Sum_probs=31.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR 1007 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~ 1007 (1104)
.-||..+=...++++.+||. +|..||..|.+.|..+++
T Consensus 12 ~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~~~Rt~~qcr 49 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQHGS---DWKMIAATFPNRNARQCR 49 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTT---CHHHHHHTCTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CHHHHHHHcCCCCHHHHH
Confidence 34888888899999999996 588999988888887665
No 269
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=83.87 E-value=3 Score=39.60 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIR 1007 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~ 1007 (1104)
||.-+=...+.++.+||..+ |..||..|.+.|..+++
T Consensus 5 Wt~eED~~L~~~v~~~g~~~--W~~Ia~~~~~Rt~~qcr 41 (131)
T 3zqc_A 5 FTEAEDDLIREYVKENGPQN--WPRITSFLPNRSPKQCR 41 (131)
T ss_dssp CCHHHHHHHHHHHHHHCSCC--GGGGTTSCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCC--HHHHHHHHCCCCHHHHH
Confidence 66677778888999999644 77888888877766655
No 270
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.80 E-value=2.5 Score=47.60 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.5
Q ss_pred cHHHHHHHH-HHHHhhcC--CCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLN-FLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~-wl~~~~~~--~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
++.+++.+. ++...... ..+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556666653 34332222 345889999999999998888777643
No 271
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.75 E-value=3.1 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+.+|.-+.|+|||..+-.++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4899999999999998888877643
No 272
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=83.66 E-value=0.63 Score=37.79 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred CCCCcccChhhhHHHHHHhhhccc
Q 001302 1078 LRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1078 ~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
.+..+.|++|||..||-||-+||-
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~ 28 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN 28 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH
Confidence 345688999999999999999994
No 273
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=83.65 E-value=2 Score=36.99 Aligned_cols=39 Identities=10% Similarity=0.293 Sum_probs=34.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIRE 1008 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~ 1008 (1104)
..||.-+=..|++++.+|| .+|..||..|.++|..+++.
T Consensus 19 ~~WT~eEd~~Ll~~v~~~G---~~W~~IA~~v~~RT~~qcr~ 57 (79)
T 2yus_A 19 REWTEQETLLLLEALEMYK---DDWNKVSEHVGSRTQDECIL 57 (79)
T ss_dssp CCCCHHHHHHHHHHHHHSS---SCHHHHHHHHSSCCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhC---CCHHHHHHHcCCCCHHHHHH
Confidence 3588888899999999999 35899999999999999994
No 274
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.52 E-value=3.5 Score=43.93 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=29.8
Q ss_pred HHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 295 ~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
..+......+.+.+|.-+.|+|||..|-++...+.. ...|++.|-..
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~ 66 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCA 66 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGG
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecC
Confidence 344444456788999999999999877665554321 22366555433
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.38 E-value=2 Score=48.18 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhhcC----CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 287 HPYQLEGLNFLRFSWSK----QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~~~----~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
++.+...+..+...... +.+.+|.-+.|+|||..+-++...+... .|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD--TPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS--CCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc--CCcccccc
Confidence 45666666555544433 3468899999999999998888877422 36665554
No 276
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=82.89 E-value=0.97 Score=49.48 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=21.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
+.+|.-+.|+|||..+-+++..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999888887754
No 277
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.62 E-value=7.2 Score=43.70 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=32.4
Q ss_pred cHHHHHHH-HHHHHhh--cCCC--cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 287 HPYQLEGL-NFLRFSW--SKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 287 ~~yQ~~gv-~wl~~~~--~~~~--~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
++.+++.+ .++.... ..+. ..+|.-+.|+|||..+-.++..+......+++.+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 55666655 3443321 2234 6889999999999998877776644322244444
No 278
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.59 E-value=4.7 Score=45.03 Aligned_cols=44 Identities=16% Similarity=0.015 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
++..+..+...+..-......+|.-+.|+|||..+-+++..+..
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44555554333222222234689999999999999888877743
No 279
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.14 E-value=0.46 Score=40.45 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=34.7
Q ss_pred cccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
.-+.|.+|...- .-..|..|...||..|+..-+.... .=.||.|...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCc
Confidence 346799998643 2468999999999999976665432 2369999853
No 280
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=81.86 E-value=0.12 Score=42.23 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=32.4
Q ss_pred ccccccccccCCCC---eeecCCCC---CccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 49 AKDDSCQACGESEN---LMSCDTCT---YAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~---l~~C~~C~---~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
.....|.+|..+++ +..| .|. +.||..||..-+.. ++.+.|+.|....
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI--SRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh--CCCCccCCCCCee
Confidence 34567999975432 3444 344 48999999766643 3568999998643
No 281
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.84 E-value=2.3 Score=36.08 Aligned_cols=49 Identities=8% Similarity=0.292 Sum_probs=40.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCC---cchhhhchhccCCCHHHHHHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGD---FDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~---~~~~~i~~~l~~Ks~~ev~~y~~~f~~ 1015 (1104)
.-||..+=..|++++.+||.+. .+|..||+.|.++|..+++....-++.
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFI 60 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4588888889999999999744 569999999999999999977644443
No 282
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.60 E-value=4.1 Score=45.28 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCC--cEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 293 gv~wl~~~~~~~~--~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
.++.|......+. +.+|.-+.|+|||..+-+++..+..
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3333433334443 3889999999999999888887753
No 283
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.91 E-value=1.3 Score=47.76 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=26.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
....+.+|.-+.|+|||..+-+++..+ ..+++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~----~~~~~~v~~~ 85 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET----NATFIRVVGS 85 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT----TCEEEEEEGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehH
Confidence 456778999999999999887776653 2255555443
No 284
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.62 E-value=1.4 Score=48.75 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1104)
..+.+|.-+.|+|||..|-+++..+ ...+++.|....+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~~l 82 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDL 82 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECCSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhHHH
Confidence 4678899999999999988887765 1235555554433
No 285
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.79 E-value=2.9 Score=47.52 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
..+.+|.-+.|+|||..|-+++..+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhccc
Confidence 5678999999999999887775542 2367766665555443
No 286
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=78.65 E-value=0.96 Score=37.30 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
+...||+|||..|+.+|.+||-
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~ 31 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGE 31 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHccCC
Confidence 3467999999999999999994
No 287
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.08 E-value=2.4 Score=49.31 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
...+.+|.-+.|+|||..|-+++..+ ...+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHHHHHhhh
Confidence 34678899999999999988877765 12366666555544433
No 288
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.36 E-value=8.3 Score=42.76 Aligned_cols=42 Identities=33% Similarity=0.474 Sum_probs=28.3
Q ss_pred HHHHHHHHHhh-cCC--CcEEEEcCCCchHHHHHHHHHHHHhcCC
Q 001302 291 LEGLNFLRFSW-SKQ--THVILADEMGLGKTIQSIAFLASLFGER 332 (1104)
Q Consensus 291 ~~gv~wl~~~~-~~~--~~~ILademGlGKTiqai~~l~~l~~~~ 332 (1104)
...+..+.... ..+ .+.+|.-+.|+|||..+-+++..+....
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 34455554444 332 2488999999999998888877665543
No 289
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=77.26 E-value=3 Score=33.52 Aligned_cols=40 Identities=15% Similarity=0.465 Sum_probs=35.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhcc-CCCHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIRE 1008 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~-~Ks~~ev~~ 1008 (1104)
..||..+=..++.++.+||.++ |..||..|. ++|..+++.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~~Rt~~qcr~ 50 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN--WADIADYVGNARTKEECRD 50 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCSSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCCCCCHHHHHH
Confidence 4688888889999999999755 789999999 999999984
No 290
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.23 E-value=6.5 Score=41.41 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
...+.+|.-+.|+|||..+-++...+ ..|++.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~ 74 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAE 74 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHH
Confidence 34567899999999999888777654 12555554443
No 291
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=76.61 E-value=3.8 Score=33.09 Aligned_cols=42 Identities=19% Similarity=0.458 Sum_probs=35.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHH
Q 001302 966 VLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009 (1104)
Q Consensus 966 ~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y 1009 (1104)
-..||.-+=..+++++.+||..+ |..||..|.++|..+++..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~Rt~~qcr~r 49 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGN--WQDVANQMCTKTKEECEKH 49 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHHTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHhCCCCHHHHHHH
Confidence 34688888889999999999744 8899999999999999843
No 292
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.44 E-value=4.1 Score=44.39 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1104)
..+++|.-+.|+|||..|-+++..+ ..+++.|....+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~~l 72 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAGEL 72 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHHHh
Confidence 3467788999999999998888777 226666654443
No 293
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=76.43 E-value=1.2 Score=35.00 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=18.5
Q ss_pred cccChhhhHHHHHHhhhccc
Q 001302 1082 KFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
..||+|||..|+.+|.+||.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~ 22 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE 22 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 57999999999999999994
No 294
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=76.03 E-value=1.4 Score=34.48 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=31.4
Q ss_pred ccccccccCC---CC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 51 DDSCQACGES---EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 51 ~~~C~~C~~~---~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...|.+|... ++ ......|+..||..|+..-+.. ...||.|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 3569999764 22 4455579999999999766654 3479999864
No 295
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.71 E-value=0.68 Score=40.07 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=31.8
Q ss_pred cccccccccCCC----Cee-ec--CCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESE----NLM-SC--DTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~----~l~-~C--~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|.... .++ .| .++...||..||..-+.. .+...||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~--~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH--HCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh--CCCCCCCCCCCee
Confidence 346799998532 243 22 333589999999766643 2346899999754
No 296
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.56 E-value=10 Score=41.37 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 295 ~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
..+........+++|.-++|+|||..|-++..... ....|++.|-..
T Consensus 16 ~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~ 62 (304)
T 1ojl_A 16 NEIAMVAPSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCA 62 (304)
T ss_dssp HHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECS
T ss_pred HHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCC
Confidence 33434345677899999999999988766655432 223477666433
No 297
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.27 E-value=4.7 Score=45.05 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=29.2
Q ss_pred cHHHHHHHH-HHHHh--hcCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLN-FLRFS--WSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~-wl~~~--~~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|+.+++.+. ++... -..+...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556666553 23221 123556889999999999988877776644
No 298
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=74.15 E-value=1.6 Score=35.16 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred CcccChhhhHHHHHHhhhccc
Q 001302 1081 GKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1081 ~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
...||.|||..||.+|.+||.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~ 29 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL 29 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc
Confidence 357999999999999999995
No 299
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=72.44 E-value=4 Score=50.09 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-C--CCceEEEeCcccH-HHHHHHHHHHc
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R--ISPHLVVAPLSTL-RNWEREFATWA 356 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~--~~p~LIV~P~s~l-~qW~~E~~~~~ 356 (1104)
.|.|-|.++|. ...+..++....|+|||.+.+.-+.++... + +..+|+|+.+... ..-+.-+....
T Consensus 2 ~L~~~Q~~av~------~~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVE------FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHH------CCSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHh------CCCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 47899999986 246677888899999999998888888754 3 3479999986544 44555565554
No 300
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.95 E-value=0.67 Score=39.28 Aligned_cols=46 Identities=33% Similarity=0.618 Sum_probs=32.7
Q ss_pred cccccccccC---CCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~---~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|.. .++.+..-.|...||..|+..-+.. ...||.|....
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcC
Confidence 3467999984 3445555669999999999765543 23799998654
No 301
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.86 E-value=10 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l 328 (1104)
....+|.-+.|+|||..|-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999988887765
No 302
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.65 E-value=2.8 Score=47.13 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s 343 (1104)
...+.+|.-+.|+|||..|-+++..+ ..+++.|....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~ 152 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASS 152 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHH
Confidence 45678899999999999987776654 23565555443
No 303
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=71.63 E-value=2.3 Score=34.36 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||.|||..||.+|.+||.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~ 28 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGF 28 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc
Confidence 3467999999999999999995
No 304
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.43 E-value=4 Score=44.57 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.6
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~ 344 (1104)
..+.+.+|.-+.|+|||..+-+++..+ ..+++.|-...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~~~~l 85 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPEL 85 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEECHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEEhHHH
Confidence 456778999999999999887777654 135555543333
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.73 E-value=10 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=19.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHH
Q 001302 305 THVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l 328 (1104)
.+.||.-+.|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999887766654
No 306
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.76 E-value=15 Score=36.95 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=25.8
Q ss_pred EcCCCchHHHHHHHHHHHHhcCCCCceEEEe--CcccHHHH
Q 001302 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVA--PLSTLRNW 348 (1104)
Q Consensus 310 ademGlGKTiqai~~l~~l~~~~~~p~LIV~--P~s~l~qW 348 (1104)
.---|.|||..++.++..+...+ .++|+|= |...+..|
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g-~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG-YNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHH
T ss_pred eCCCCccHHHHHHHHHHHHHHCC-CeEEEEECCCCCCHHHH
Confidence 34568999999999998887754 3666663 34444444
No 307
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=69.44 E-value=17 Score=36.94 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=35.3
Q ss_pred HHHHHHH-hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcc--cHHHHHH
Q 001302 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS--TLRNWER 350 (1104)
Q Consensus 293 gv~wl~~-~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s--~l~qW~~ 350 (1104)
++..+.. .+..|.-.+|+-+.|.|||..+..++. . ..++++++.-.. ....|.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHH
Confidence 4555543 455677788999999999998887777 1 123677766543 3344443
No 308
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=69.25 E-value=7 Score=38.73 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhh-----cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHH
Q 001302 287 HPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1104)
Q Consensus 287 ~~yQ~~gv~wl~~~~-----~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~ 349 (1104)
.+.|.++++.+.... ..+.+.+|.-+.|+|||..+-+++..+......+++.+....++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 357888877765332 346778899999999999988888777522222444443333443333
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=69.13 E-value=15 Score=42.36 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=26.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
-.+++-..|.|||.++..++..+...+..+.||-++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3567778999999999888888876654454555553
No 310
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=68.83 E-value=2.3 Score=33.21 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.6
Q ss_pred cccChhhhHHHHHHhhhccc
Q 001302 1082 KFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
..||.|||..|+.+|.+||-
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGT 23 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 57999999999999999996
No 311
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=68.55 E-value=2.5 Score=33.05 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.5
Q ss_pred cccChhhhHHHHHHhhhccc
Q 001302 1082 KFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
..||.|||..|+.+|.+||-
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGP 23 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHCc
Confidence 57999999999999999995
No 312
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=68.25 E-value=2.8 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||.|||..|+.+|.+||.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~ 30 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGE 30 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
Confidence 4567999999999999999994
No 313
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.18 E-value=1.4 Score=46.51 Aligned_cols=45 Identities=27% Similarity=0.615 Sum_probs=33.6
Q ss_pred ccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
-..|.+|..-- .-..|..|+..||..|+.--+... +.=.||.|..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC--CCCCCCCCCC
Confidence 56799998642 358899999999999995544432 3346999986
No 314
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.04 E-value=13 Score=44.87 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-------------CCceEEEeCcccHHH
Q 001302 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-------------ISPHLVVAPLSTLRN 347 (1104)
Q Consensus 292 ~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-------------~~p~LIV~P~s~l~q 347 (1104)
..++-+......+...+|.-+.|+|||..+-++...+.... ..|.+.++|.....+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34444445556788999999999999998877766553221 136677777655443
No 315
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=67.69 E-value=3.2 Score=35.69 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.9
Q ss_pred CCCcccChhhhHHHHHHhhhcc
Q 001302 1079 RGGKFWKEEHDSLLLRAVLKYV 1100 (1104)
Q Consensus 1079 ~~~~~~~~eeD~~LL~~i~~~G 1100 (1104)
.....||.|||..||.+|.+||
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G 37 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK 37 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS
T ss_pred ccCCCcCHHHHHHHHHHHHHhC
Confidence 3467899999999999999999
No 316
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.50 E-value=1.3 Score=38.20 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=23.7
Q ss_pred ecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 65 SCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 65 ~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
.-..|...||..|+..-+.... .||.|..+.
T Consensus 44 ~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 74 (81)
T 2ecl_A 44 VWGECNHSFHNCCMSLWVKQNN----RCPLCQQDW 74 (81)
T ss_dssp EEETTSCEEEHHHHHHHTTTCC----BCTTTCCBC
T ss_pred EeCCCCCccChHHHHHHHHhCC----CCCCcCCCc
Confidence 3347999999999987766532 799998653
No 317
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=67.05 E-value=9.8 Score=29.50 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y 1009 (1104)
..||..+-..+++++.+||.. +|..||..|.+.|..+++..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~R 44 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTD--DWKVIANYLPNRTDVQCQHR 44 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS--CHHHHHHTSTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CHHHHHHHcCCCCHHHHHHH
Confidence 347777888999999999964 48899999999999999853
No 318
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=67.02 E-value=7.2 Score=30.30 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIRE 1008 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~ 1008 (1104)
..||..+-..+++++.+||.. +|..||..|.++|..+++.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~ 43 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPK--RWSVIAKHLKGRIGKQCRE 43 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTT--CHHHHHTTSTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcC--hHHHHHHHcCCCCHHHHHH
Confidence 357777778999999999964 4889999999999999984
No 319
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=66.97 E-value=0.83 Score=37.91 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=30.8
Q ss_pred ccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 51 ~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...|.+|... +..+..-.|+..||..|+..-+... ..||.|...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSB
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCcc
Confidence 4669999643 3445555799999999996554432 259999864
No 320
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=66.96 E-value=3.2 Score=33.47 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||.|||..|+.+|-+||.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~ 28 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQ 28 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 3467999999999999999994
No 321
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.91 E-value=3 Score=35.30 Aligned_cols=45 Identities=29% Similarity=0.629 Sum_probs=31.3
Q ss_pred ccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|... ...+.--.|...||..|+..-+... -.||.|....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCcc
Confidence 4679999753 2333334699999999997655432 4799998654
No 322
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=66.61 E-value=8.3 Score=47.70 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcC-CC--CceEEEeCcccH
Q 001302 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLSTL 345 (1104)
Q Consensus 285 ~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~-~~--~p~LIV~P~s~l 345 (1104)
.|.|.|.++|. ...+..++....|+|||.+.+.-+.++... +. ..+|+|+.+...
T Consensus 11 ~Ln~~Q~~av~------~~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkA 68 (724)
T 1pjr_A 11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 (724)
T ss_dssp TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHH
T ss_pred hCCHHHHHHHh------CCCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHH
Confidence 58899999986 345677777899999999999888888764 32 479999986543
No 323
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=66.33 E-value=1.2 Score=41.13 Aligned_cols=49 Identities=27% Similarity=0.591 Sum_probs=32.6
Q ss_pred ccccccccCCC------------------CeeecCCCCCccccCcCCCCCCCCC-CCCCccCcCCCCC
Q 001302 51 DDSCQACGESE------------------NLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~------------------~l~~C~~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~ 99 (1104)
+..|.+|...- ..+....|...||..|+..-+.... ...-.||.|....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 45799997531 1233567999999999976653211 2345799998654
No 324
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.91 E-value=8.7 Score=30.25 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=28.8
Q ss_pred cccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|...-.--.--.|+..|+..|+.. ..-.||.|....
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEe
Confidence 3567999986433222235888999999854 234699998643
No 325
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=65.78 E-value=6.4 Score=35.03 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=37.1
Q ss_pred hhccCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHH
Q 001302 964 FRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYG 1010 (1104)
Q Consensus 964 l~~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~ 1010 (1104)
-...-||.-+++.|..++..||. ++..|+..|..||..|+..|-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK---~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK---NFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT---CHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC---CHHHHHHHcCCCCHHHHHHHH
Confidence 34456999999999999999995 357889999999999998764
No 326
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=65.51 E-value=7.2 Score=39.36 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=26.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
.+.+|.-+.|+|||..+-+++..+...+ .+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~-~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN-VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEE
Confidence 6788999999999999888887776543 355544
No 327
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=68.68 E-value=1.3 Score=39.06 Aligned_cols=51 Identities=10% Similarity=0.290 Sum_probs=41.5
Q ss_pred hhccCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhh
Q 001302 964 FRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHI 1017 (1104)
Q Consensus 964 l~~~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~ 1017 (1104)
+....||..+-..|++++.+||. +|..||..|.++|..+++.+...+..++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR---NWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34456888888899999999996 4889999999999999998766555543
No 328
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=64.89 E-value=13 Score=42.92 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=26.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
-.+++-..|.|||.++..++.++...+..+.||-+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356777899999999999998887765444444444
No 329
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=64.89 E-value=1.3 Score=34.67 Aligned_cols=44 Identities=30% Similarity=0.657 Sum_probs=31.8
Q ss_pred ccccccccCC----CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 51 DDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 51 ~~~C~~C~~~----~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...|.+|... +.......|...||..|+..-+... ..||.|...
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 4669999864 2346667799999999996554332 579999864
No 330
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.82 E-value=3.8 Score=34.19 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=19.6
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
+...||.|||..|+.+|.+||.
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~ 29 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGK 29 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc
Confidence 4468999999999999999993
No 331
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.67 E-value=0.85 Score=38.42 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=32.6
Q ss_pred ccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccc
Q 001302 51 DDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDID 103 (1104)
Q Consensus 51 ~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ie 103 (1104)
...|.+|... +..+.--.|...||..|+..-+... -.||.|......+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQLA 66 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSSCC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccccc
Confidence 4679999864 2233223599999999996655432 27999987654433
No 332
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.11 E-value=5.9 Score=46.55 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=26.0
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
....+.+|.-+.|+|||..|-++...+ ..|++.|-.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~ 271 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING 271 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEc
Confidence 456678999999999999887775543 236655543
No 333
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=63.73 E-value=4.6 Score=46.54 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=39.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~ 1015 (1104)
.-+|.-+...|++++.+||+ +|..|+.-+..||..+|+.|...|-+
T Consensus 381 ~~WT~eE~~~f~~al~~yGk---dw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGR---DFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTT---CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCc---CHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34888899999999999997 47899999999999999998654433
No 334
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=63.47 E-value=21 Score=44.31 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHH----HHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~l----diL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.|||-....-.+-.....|.++||.+.....+ +.+..++...|+++..++|+++..+|...+.....+... ++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~---Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 57886655444444445788999999876544 445555555689999999999999999999988765444 56
Q ss_pred eecCc-ccccccccCCCEEEEECCC
Q 001302 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1104)
Q Consensus 682 lstra-gg~GINL~~ad~VIi~D~~ 705 (1104)
++|.+ ....+++...+.||+=+-+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 66664 3446778888888887765
No 335
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=63.24 E-value=0.88 Score=49.94 Aligned_cols=48 Identities=33% Similarity=0.641 Sum_probs=31.9
Q ss_pred ccccccccCC----CC--eeecC--CCCCccccCcCCCCCCCCCCC-------CCccCcCCCC
Q 001302 51 DDSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPSG-------SWRCPECVSP 98 (1104)
Q Consensus 51 ~~~C~~C~~~----~~--l~~C~--~C~~~~H~~Cl~p~l~~~p~~-------~W~C~~C~~~ 98 (1104)
...|.+|-.. |. ...|+ .|+..||..||..-+...++. .=.||-|..+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 4569999742 32 46797 899999999996654332211 1249999864
No 336
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=63.11 E-value=26 Score=41.62 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHH-HHhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeec--Ccccc
Q 001302 613 LDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST--RAGGL 689 (1104)
Q Consensus 613 L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llst--ragg~ 689 (1104)
+.+.|..+ ...+.++|||.....+++.+.+. .+.++. +.|... .+..+++.|...+. .+|+++ ....+
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~--~~~~~~~~~~~~~~---~vl~~v~gg~~~E 451 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDS--SVEDLYSAISANNK---VLIGSVGKGKLAE 451 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSC--CHHHHHHHTTSSSS---CEEEEESSCCSCC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCC--CHHHHHHHHHhcCC---eEEEEEecceecc
Confidence 33444443 33466888888888877777653 343333 333321 24668888864332 256665 68899
Q ss_pred ccccc-----CCCEEEEECCCCChhhHHHHHHhhHh
Q 001302 690 GINLA-----TADTVIIYDSDWNPHADLQAMARAHR 720 (1104)
Q Consensus 690 GINL~-----~ad~VIi~D~~wNp~~~~Qa~gR~hR 720 (1104)
|||++ .+..|||.-.|+-+. +.....|...
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~ 486 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQR 486 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHH
T ss_pred cccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHH
Confidence 99999 478999998887444 4434444433
No 337
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.98 E-value=4.4 Score=34.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.7
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||+|||..||.++-+||-
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~ 29 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR 29 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc
Confidence 4468999999999999999995
No 338
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.45 E-value=4.5 Score=34.26 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.0
Q ss_pred CcccChhhhHHHHHHhhhccc
Q 001302 1081 GKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1081 ~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
...||.|||..|+.+|.+||.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~ 28 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPP 28 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 467999999999999999994
No 339
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=60.91 E-value=1.3 Score=39.12 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=32.2
Q ss_pred cccccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~---~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|... ++.+..-.|+..||..|+..-+... -.||.|....
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccC
Confidence 45679999743 3444445599999999997665432 2799998643
No 340
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=60.51 E-value=2 Score=39.92 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=1.5
Q ss_pred ccccccccccCCCC------------------eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 49 AKDDSCQACGESEN------------------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~------------------l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...+.|.+|...-. .+.-..|...||..|+.+-|... -.||.|..+
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 34578999985421 11123699999999998877653 369999864
No 341
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.36 E-value=8.2 Score=43.69 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHH-Hhh-c----CCCcEEE--EcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLNFLR-FSW-S----KQTHVIL--ADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~wl~-~~~-~----~~~~~IL--ademGlGKTiqai~~l~~l~~ 330 (1104)
|+.+++.+.-+. ... . .+...+| .-+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 556666663332 222 1 2345667 789999999988877776643
No 342
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.77 E-value=29 Score=43.03 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcC
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~ 331 (1104)
...+.+|.-+.|+|||..+-+++..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 46678999999999999988888776543
No 343
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=59.43 E-value=1.9 Score=39.45 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=32.4
Q ss_pred ccccccccccCCCC------------------eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 49 AKDDSCQACGESEN------------------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~------------------l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...+.|.+|...-. .+.-..|...||..|+.+-|.. .-.||.|...
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 34577999975421 2333579999999999877654 2369999864
No 344
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=58.96 E-value=30 Score=43.50 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3557899999999999999888887754
No 345
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.62 E-value=14 Score=43.09 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
..+++|.-+.|+|||..+-++...+ ..|++.+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~ 82 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----NVPFFHISG 82 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCH
Confidence 4568899999999999887776644 136655543
No 346
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=58.26 E-value=4.7 Score=36.60 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.6
Q ss_pred CCCcccChhhhHHHHHHhhhccc
Q 001302 1079 RGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1079 ~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
.....||.|||..|+.||-+||-
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~ 33 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGT 33 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC
Confidence 35578999999999999999996
No 347
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=57.62 E-value=13 Score=29.78 Aligned_cols=41 Identities=12% Similarity=0.400 Sum_probs=34.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y 1009 (1104)
.-||..+-..+++++.+||.. +|..||..|.+.|..+++..
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~R 49 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQ--DWKFLASHFPNRTDQQCQYR 49 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTT--CHHHHHHHCSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CHHHHHHHccCCCHHHHHHH
Confidence 357777888999999999953 48899999999999999843
No 348
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=57.25 E-value=14 Score=48.65 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCC-----CCceEEEeCcccH
Q 001302 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTL 345 (1104)
Q Consensus 283 ~~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~-----~~p~LIV~P~s~l 345 (1104)
+.+|.+-|..++. ..+++.++....|+|||.+.+.-+.+++..+ ...+|||+++...
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 3579999999975 4577899999999999999888777776553 2379999997544
No 349
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.19 E-value=4.9 Score=33.41 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=33.1
Q ss_pred cccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|...-. .+.. .|+..||..|+..-+.. ....-.||.|....
T Consensus 19 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 3467999987533 2222 89999999999766542 13455799998654
No 350
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=57.18 E-value=50 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.510 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcchhhhchh----ccCCCHHHHHHHHHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPR----LKQKSYEEIREYGILFLT 1015 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~~~~~~i~~~----l~~Ks~~ev~~y~~~f~~ 1015 (1104)
||..+-...+..+.+||.+. |..|+.. +.+.|..+++..-..+..
T Consensus 3 WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 3 FSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 66677788999999999865 7788875 789999999976555554
No 351
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=56.30 E-value=2.1 Score=35.15 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=32.3
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1104)
...|.+|...-. -.....|+..||..|+..-+.. .-.||.|.....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhH
Confidence 456999987643 2455679999999999654432 237999987554
No 352
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=55.97 E-value=6.3 Score=33.29 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=20.5
Q ss_pred CCCCcccChhhhHHHHHHhhhccc
Q 001302 1078 LRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1078 ~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
......||+|||..|+..+-+||-
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~ 43 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN 43 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC
Confidence 334568999999999999999995
No 353
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=55.03 E-value=15 Score=35.55 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHH
Q 001302 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1104)
Q Consensus 607 S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L 644 (1104)
..++.+..+|+.+....|.||+|.|.....++.|.+.|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999
No 354
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=54.64 E-value=3.6 Score=36.11 Aligned_cols=28 Identities=25% Similarity=0.738 Sum_probs=23.2
Q ss_pred ccccccccCC--CCeeecCC--CCCccccCcC
Q 001302 51 DDSCQACGES--ENLMSCDT--CTYAYHAKCL 78 (1104)
Q Consensus 51 ~~~C~~C~~~--~~l~~C~~--C~~~~H~~Cl 78 (1104)
...|.+|+.. |.-+.|.. |..+||..|-
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHH
Confidence 4679999863 77899975 9999999994
No 355
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=54.02 E-value=61 Score=34.34 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=35.6
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcC---------CCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~---------~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..|.-.+|+-..|+|||..+..++..+... ..++++++.-.....+....+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 567778899999999999988888765432 13467777665555444333333
No 356
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=53.79 E-value=15 Score=38.06 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=38.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~ 354 (1104)
..|.-.+|+-+.|+|||.-++.++.........+++++.-.....+..+.+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 56667899999999999999888876544434588888876665555555544
No 357
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.70 E-value=22 Score=29.06 Aligned_cols=46 Identities=11% Similarity=0.299 Sum_probs=37.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHh
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~ 1016 (1104)
..||.-+-..+++++..||. +|..||. +.++|..+++..-..++..
T Consensus 10 ~~WT~eED~~L~~~~~~~g~---~W~~Ia~-~~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT---QWRTIAP-IIGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT---CHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence 45888888899999999996 5899999 8899999999765555543
No 358
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=52.59 E-value=13 Score=40.63 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHh-cCCCCceEEE
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVV 339 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~-~~~~~p~LIV 339 (1104)
+.+.+|.-++|+|||..+.+++..+. ..+ .+++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEE
Confidence 57889999999999999999888887 554 245444
No 359
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=52.53 E-value=25 Score=40.58 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHH
Q 001302 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 292 ~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E 351 (1104)
.+++.+...+..|.-.+|+-..|+|||.-++.++.........|++++.......++..-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R 247 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLR 247 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 345556555677778899999999999999988887765434588888776555554443
No 360
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.33 E-value=19 Score=42.02 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCccc-HHHHHHHHHHHcCCCeEEEEe
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVVMYV 365 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~-l~qW~~E~~~~~p~~~vv~~~ 365 (1104)
.+....|.--+|.|||+.+.+++.. ..+|+|||||... ..+|..++..|+|+. |..|-
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 3455678888999999987666643 2459999999755 578999999998865 54443
No 361
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.20 E-value=1.9 Score=35.72 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=32.4
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1104)
...|.+|...-.. .-..|...||..|+..-+. ....||.|.....
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC-cccCCCCcccHHHHHHHHH----CcCcCCCcCCccc
Confidence 4679999875433 3456999999999976554 3557999986544
No 362
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=52.06 E-value=3.3 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=35.1
Q ss_pred cccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccc
Q 001302 50 KDDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (1104)
Q Consensus 50 ~~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ieki 105 (1104)
....|.+|...- +-+.-..|+..||..|+...+... +.-.||.|.......+.+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCTTTT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCcccc
Confidence 356799998643 233334499999999996655432 235799999754433333
No 363
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=51.94 E-value=18 Score=28.19 Aligned_cols=39 Identities=10% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhcc--CCCHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLK--QKSYEEIRE 1008 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~--~Ks~~ev~~ 1008 (1104)
-||..+-...+.++.+||.+ +|..|+..+. +.|..+++.
T Consensus 4 ~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~ 44 (53)
T 1w0t_A 4 AWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD 44 (53)
T ss_dssp CCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHH
Confidence 36777778899999999964 4789999999 899999884
No 364
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=51.84 E-value=34 Score=38.57 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh---CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEe
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Ll 682 (1104)
.|||-.+..-.+..+...|.++||.+.....+.-+.+.+.. .|+++..+.|+++..+|...+..+..+... +++
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~---Iiv 122 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH---ILV 122 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS---EEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC---EEE
Confidence 57787644433334446788999999988877766666655 688999999999998888888888665443 344
Q ss_pred ecC-cccc---cccccCCCEEEEEC
Q 001302 683 STR-AGGL---GINLATADTVIIYD 703 (1104)
Q Consensus 683 str-agg~---GINL~~ad~VIi~D 703 (1104)
+|. ..-. -+++...+.||+=+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred ECHHHHHHHHHHhccccccEEEEeC
Confidence 442 2211 14445566665543
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.78 E-value=34 Score=37.35 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHH
Q 001302 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1104)
Q Consensus 293 gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~ 353 (1104)
+++-+.-.+..|.-.+|+-..|.|||.-++.++......+ .++|++.-.....+...-+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCCHHHHHHHHH
Confidence 4544555567788899999999999999988887765543 58888887655555444443
No 366
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.31 E-value=8.8 Score=31.52 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||.|||..|+.++-+||.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~ 29 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT 29 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 3467999999999999999985
No 367
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.26 E-value=17 Score=30.14 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=34.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIRE 1008 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~ 1008 (1104)
.-||.-+-..+++++.+||.. +|..||..|.+.|..+++.
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~~Rt~~qcr~ 49 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKN--QWSRIASLLHRKSAKQCKA 49 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSS--CHHHHHHHSTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhcCCCHHHHHH
Confidence 348888888999999999953 4889999999999999983
No 368
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.06 E-value=15 Score=45.71 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
...+.+|.-+.|+|||+.|-+++..+ ..|++.|....++..|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMW 551 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHTTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhccc
Confidence 45678999999999998877666543 2366666655655554
No 369
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=50.85 E-value=24 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
+...++.-..|.|||.++..++..+.......++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3445566789999999988887777642223555554
No 370
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=50.37 E-value=3 Score=38.66 Aligned_cols=36 Identities=31% Similarity=0.622 Sum_probs=28.1
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
..+|.+|++.+ |+.|...||+.|+.++ .|.|..|..
T Consensus 7 C~~C~~C~~~~----C~~C~~c~~~~~~~~~-------~~~~~~c~~ 42 (117)
T 4bbq_A 7 CRKCKACVQGE----CGVCHYCRDMKKFGGP-------GRMKQSCVL 42 (117)
T ss_dssp CSCSHHHHSCC----CSCSHHHHHSGGGTSC-------CCSCCCCGG
T ss_pred CCcCcCcCCcC----CCCCCCCcCCcccCCC-------Cccccchhh
Confidence 46788888764 9999999999998554 477777753
No 371
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=50.29 E-value=7.5 Score=36.27 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=19.7
Q ss_pred CCcccChhhhHHHHHHhhhccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
....||.|||..|+.||-+||-
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~ 51 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGT 51 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCC
Confidence 3467999999999999999996
No 372
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=49.98 E-value=29 Score=42.12 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 284 ~~L~~yQ~~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
+.+..-|.+++..+.... . +..+|...-|-|||..+-.++..+. +..+|.+|.
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~-~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~ 226 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-P-GVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPA 226 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-S-EEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhh-h-CeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCC
Confidence 467889999997774432 2 3357777899999955544444442 245888884
No 373
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=49.70 E-value=6.6 Score=32.35 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=19.9
Q ss_pred hhhhhhhcCcccccccccchHhHHHHhhcChhH
Q 001302 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~ 163 (1104)
..|||||+|.+... |||...+.. .+|.+
T Consensus 28 l~fLvKWKg~~~~d--~Vpa~e~n~---~~Pql 55 (65)
T 3kup_A 28 LMFLMKWKDSDEAD--LVLAKEANM---KCPQI 55 (65)
T ss_dssp CEEEEEETTCSCCE--EEEHHHHHH---HCHHH
T ss_pred EEEEEEECCCChhh--eEEHHHHHh---hChHH
Confidence 58999999988655 777666543 35654
No 374
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=47.49 E-value=28 Score=33.02 Aligned_cols=46 Identities=11% Similarity=-0.081 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 295 ~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
..+......+.+++|.-+.|+|||..|-++..... ....|++|-|.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v~~~~ 60 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFVYREL 60 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCEEEEC
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEEEECC
Confidence 33433445677899999999999988766544321 12346664343
No 375
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=5.9 Score=32.86 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=30.8
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. .+.. .|...||..|+...+.. .-.||.|....
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 467999986533 2222 69999999999665543 25799998754
No 376
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=47.05 E-value=9.6 Score=29.03 Aligned_cols=35 Identities=29% Similarity=0.767 Sum_probs=20.7
Q ss_pred eecCCCCCccccCcCCC-CCCCCCCCCCccCcCCCCC
Q 001302 64 MSCDTCTYAYHAKCLVP-PLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p-~l~~~p~~~W~C~~C~~~~ 99 (1104)
..|..|+..|...=-+| +..+.| .+|.||.|....
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP-~dw~CP~Cg~~k 40 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVSK 40 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCBG
T ss_pred EECCCCCeEEeCCcCCCcchhhCC-CCCcCcCCCCcH
Confidence 45777776665332121 233443 579999998643
No 377
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.39 E-value=10 Score=43.68 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=35.2
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E 351 (1104)
...+|++|.-+.|+|||..|-+++..+ ..|++.|....++..|..+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCSSCSSH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEehhhhhhcccch
Confidence 456788999999999999988887765 2378888877776655444
No 378
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.20 E-value=10 Score=43.72 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=34.8
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E 351 (1104)
...+|.+|.-+.|+|||..|-+++..+ ..|++.|....++..|..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGTCCSSSSH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhhhccccchH
Confidence 456788999999999999998888765 1377777777776655444
No 379
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=45.79 E-value=4 Score=40.27 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=33.8
Q ss_pred ccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...- +-+.+..|+..||..|+...+.. +.-.||.|..+.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcC
Confidence 46799998653 35556689999999999665542 345799998754
No 380
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.70 E-value=4.2 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=31.1
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. ..|+..||..|+..-+. ...-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS---SSSPKCTACQESI 60 (66)
T ss_dssp CEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT---TSSCCCTTTCCCC
T ss_pred CCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH---hCcCCCCCCCcCC
Confidence 467999986422 111 47999999999976654 2345799998754
No 381
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.69 E-value=6.3 Score=30.93 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=28.6
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPEC 95 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C 95 (1104)
...|.+|...-.--.--.|+..||..|+..-+... ...-.||.|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 46799998643211113699999999997654432 245578887
No 382
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=44.54 E-value=33 Score=39.59 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHH
Q 001302 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWER 350 (1104)
Q Consensus 293 gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~ 350 (1104)
+++.+...+..|.-.+|+-..|+|||.-++.++..+......+++++.......+...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 4555655677788899999999999999988888776433348888876544444433
No 383
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=44.37 E-value=27 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.701 Sum_probs=20.5
Q ss_pred eecCCCCCccccCcCC-----CC---CCCCCCCCCccCcCCCCCC
Q 001302 64 MSCDTCTYAYHAKCLV-----PP---LKAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 64 ~~C~~C~~~~H~~Cl~-----p~---l~~~p~~~W~C~~C~~~~~ 100 (1104)
..|..|+..|...==+ +| ..+. ..+|.||.|.....
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDL-PDDWACPVCGASKD 47 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSS-CTTCCCSSSCCCTT
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHC-CCCCcCCCCCCcHH
Confidence 4577777666432111 11 1223 36899999987543
No 384
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=43.66 E-value=12 Score=31.31 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=32.5
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCC---CCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP---PSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~---p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. -.|+..||..|+..-+... ..+.-.||.|....
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 467999986422 111 2699999999997666542 12356899999754
No 385
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.29 E-value=14 Score=42.38 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=36.0
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~ 352 (1104)
...+|.+|.-+.|+|||..|-+++..+ ..+++.|....++..|.-|-
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGGGCCSSSSHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHHhhhccCchH
Confidence 456788999999999999998887765 23788888877776665443
No 386
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=42.61 E-value=29 Score=35.62 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCcccChhhhHHHHHHhhhccccc
Q 001302 1041 VLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKYVSCF 1103 (1104)
Q Consensus 1041 ~~~ri~~~~ll~~kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~eeD~~LL~~i~~~G~~~ 1103 (1104)
++..-+.++.|.+++...- .+++.-+........||+||+..++.++-+||=.|
T Consensus 102 Iq~~kQ~~~~L~~~~~~~I---------e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW 155 (235)
T 2iw5_B 102 IQNIKQTNSALKEKLDGGI---------EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDF 155 (235)
T ss_dssp HHHHHHHHHHHHHHSTTTT---------GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHhhc---------ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCH
Confidence 3334466788877764221 11222233333456899999999999999999654
No 387
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=42.52 E-value=3.6 Score=36.96 Aligned_cols=46 Identities=26% Similarity=0.549 Sum_probs=34.4
Q ss_pred ccccccccCC-CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGES-ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~-~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|... .+-+.|..|+..||..|+..-+... .-.||.|..+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBC
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcC
Confidence 4679999865 3467779999999999996554432 15799998754
No 388
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=42.24 E-value=4.4 Score=38.75 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=29.4
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
+..|.+|...-.-..--.|+..||..|+..-+.. .-.||.|..+
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCB
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCc
Confidence 3569999865331112259999999998655443 2369999864
No 389
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=41.68 E-value=4.9 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.2
Q ss_pred cchhhhhhhcc-CCccceeeeeeeee
Q 001302 192 TTVDRILACRG-EDDEKEYLVKYKEL 216 (1104)
Q Consensus 192 ~~verIi~~r~-~~~~~~yLVKWkgL 216 (1104)
..|++|++... .+|...||+||++-
T Consensus 11 ~~Ve~I~g~~~~~~g~L~flikwk~~ 36 (68)
T 1e0b_A 11 DLVSSIDTIERKDDGTLEIYLTWKNG 36 (68)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEETTS
T ss_pred hheeEEEEEEECCCCEEEEEEEECCC
Confidence 46889998887 78899999999964
No 390
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.67 E-value=69 Score=28.62 Aligned_cols=96 Identities=8% Similarity=-0.074 Sum_probs=52.4
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccC--CCCceEEEeecCcccccccc--cCCC
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK--NSSRFCFLLSTRAGGLGINL--ATAD 697 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~--~~~~~v~Llstragg~GINL--~~ad 697 (1104)
..|..|..++.....++.+ ....+..+.+|-.++...-...+...+.. .....+++++......-... ..|+
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 3477777766655555544 34567888888776655555566665543 22333344544432221221 1244
Q ss_pred EEEEECCCCChhhHHHHHHhhHhhCC
Q 001302 698 TVIIYDSDWNPHADLQAMARAHRLGQ 723 (1104)
Q Consensus 698 ~VIi~D~~wNp~~~~Qa~gR~hRiGQ 723 (1104)
. ++.-|.++....+++.++++-++
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCC
Confidence 4 33457889999888888876544
No 391
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=41.54 E-value=4.3 Score=33.51 Aligned_cols=45 Identities=27% Similarity=0.652 Sum_probs=32.5
Q ss_pred ccccccccCC-------CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|... +.......|+..||..|+..-+... -.||.|....
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCcc
Confidence 4679999853 3445667899999999996554332 2799998754
No 392
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.35 E-value=16 Score=42.33 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.2
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
..+.+.+|.-+.|+|||..|-++...+-.. .+++.|....+...|
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVYSTE 105 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGCCSS
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHHHHh
Confidence 344679999999999999999888876322 377776665554333
No 393
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=41.33 E-value=7.2 Score=33.09 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=20.5
Q ss_pred hhhhhhhhcCcccccccccchHhHHHHhhcChhH
Q 001302 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (1104)
Q Consensus 130 ~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~ 163 (1104)
+..|||||+|.+-.. |||...+.. .+|.+
T Consensus 37 el~fLVKWKg~~e~d--lVpa~ean~---k~Pql 65 (75)
T 3i3c_A 37 DLMFLMKWKDTDEAD--LVLAKEANV---KCPQI 65 (75)
T ss_dssp CCEEEEEETTSSCEE--EEEHHHHHH---HCHHH
T ss_pred cEEEEEEECCCChhc--eEEHHHHhh---hChHH
Confidence 358999999988755 788776643 35654
No 394
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=41.15 E-value=8.6 Score=32.83 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=31.9
Q ss_pred ccccccccCCCC-----eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCc
Q 001302 51 DDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLND 101 (1104)
Q Consensus 51 ~~~C~~C~~~~~-----l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 101 (1104)
+..|.+|...-. .+.| .|+..|+..|+..-... +...||.|..+...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTD---ENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 467999987421 2223 59999999998544322 45789999986543
No 395
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=40.84 E-value=49 Score=36.58 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 293 gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
.++.+...+..+.-.||+...|.|||.-++.++..+... ..+++++...-...+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql 89 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQL 89 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHH
Confidence 455555566777789999999999999998888776552 3488888775444443
No 396
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=40.77 E-value=32 Score=39.66 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHH
Q 001302 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWER 350 (1104)
Q Consensus 292 ~gv~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~ 350 (1104)
.+++.+...+..|.-.||+...|.|||.-++.++...... ..++|++.-.-...+...
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~ 242 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIK 242 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHH
Confidence 3555565567778889999999999999999988877655 348888876544444433
No 397
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.71 E-value=14 Score=42.49 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=33.5
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~ 349 (1104)
...+|.+|.-+.|+|||..|-+++..+ ..+++.|....++..|.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCCSSC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhcccc
Confidence 456778999999999999998888765 23777777776665543
No 398
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=40.35 E-value=48 Score=27.26 Aligned_cols=40 Identities=10% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhcc--CCCHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLK--QKSYEEIREY 1009 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~--~Ks~~ev~~y 1009 (1104)
-||..+-...+.++.+||.+ +|..|+..|. +.|..+++.-
T Consensus 12 ~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~R 53 (69)
T 1ity_A 12 AWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDR 53 (69)
T ss_dssp CCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHH
Confidence 37777778899999999964 4889999999 9999999854
No 399
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=40.18 E-value=4 Score=32.84 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=31.7
Q ss_pred ccccccccCC-------CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|... +..+....|+..||..|+..-+.. .-.||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 3569999863 234456689999999999654433 23799998754
No 400
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.11 E-value=61 Score=28.03 Aligned_cols=33 Identities=36% Similarity=0.905 Sum_probs=26.5
Q ss_pred eeecCCCCCc-cccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 63 LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 63 l~~C~~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
|+.|..|... -|..|. .+.. ....|.|..|...
T Consensus 46 L~lC~~Cgs~gtH~~Cs--~l~~-~~~~weC~~C~~v 79 (85)
T 1weq_A 46 LILCATCGSHGTHRDCS--SLRP-NSKKWECNECLPA 79 (85)
T ss_dssp CEECSSSCCCEECSGGG--TCCT-TCSCCCCTTTSCC
T ss_pred EEeCcccCCchhHHHHh--CCcC-CCCCEECCcCccc
Confidence 9999999955 999998 3432 4678999999853
No 401
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=40.06 E-value=45 Score=30.04 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhh
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHIT 1018 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~ 1018 (1104)
.||..+-..+++++.+||. .|..||..|.+.|..+++..-..+..+..
T Consensus 55 ~WT~eEd~~L~~~~~~~G~---~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 55 PWSPEEDMLLDQKYAEYGP---KWNKISKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp CCCHHHHHHHHHHHHHTCS---CHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCc---CHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence 4777777889999999995 58999999999999999987776666543
No 402
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=40.05 E-value=15 Score=28.97 Aligned_cols=35 Identities=31% Similarity=0.761 Sum_probs=20.7
Q ss_pred eecCCCCCccccCcCCC-----C---CCCCCCCCCccCcCCCCC
Q 001302 64 MSCDTCTYAYHAKCLVP-----P---LKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 64 ~~C~~C~~~~H~~Cl~p-----~---l~~~p~~~W~C~~C~~~~ 99 (1104)
..|..|+..|...=-+| | ..+. ..+|.||.|....
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~l-P~dw~CP~Cg~~K 46 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDI-PDDWVCPLCGVGK 46 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGS-CTTCBCTTTCCBG
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHC-CCCCcCcCCCCcH
Confidence 45777777775432111 1 1233 3689999998754
No 403
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.77 E-value=13 Score=42.88 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=35.2
Q ss_pred cCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHH
Q 001302 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1104)
Q Consensus 302 ~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E 351 (1104)
...+|.+|.-..|+|||+.|-+++..+ ..+++.|....++..|.-+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCCCSSSH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEhHHhhcccCCH
Confidence 567888999999999999988887765 2377888777776655444
No 404
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=39.62 E-value=22 Score=29.96 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHH
Q 001302 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGI 1011 (1104)
Q Consensus 967 ~GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~ 1011 (1104)
..||..+-...++++.+||. .|..||..| +.|..+++..-.
T Consensus 24 ~~wT~EED~~L~~l~~~~G~---kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGN---DWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSS---CHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CHHHHHHHh-CCCHHHHHHHHH
Confidence 45888888899999999995 389999999 999999996543
No 405
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=39.56 E-value=1.2e+02 Score=27.23 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHHcCCCCcchhhhchhc----cCCCHHHHHHHHHHHHHhhhhcCCCCccccCCCCCCccchhHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRL----KQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVR 1044 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~~~~~~i~~~l----~~Ks~~ev~~y~~~f~~~~~e~~~d~~~~~~~i~k~~~k~~~~~~r 1044 (1104)
||..+-...+..+.+||.+. |..|+..+ .+-|.-+++.--..+...-. + .-.+.+|..-.++++.|
T Consensus 16 WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~--~------~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 16 FSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK--I------SPQQRRGEPVPQELLNR 85 (105)
T ss_dssp CCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT--C------CTTTTTCCSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHHHHHHHHHhhcc--C------CcccccCCCCCHHHHHH
Confidence 66677788999999999866 67888754 78999999965444333211 1 11123343445778777
Q ss_pred HHH
Q 001302 1045 IAV 1047 (1104)
Q Consensus 1045 i~~ 1047 (1104)
|-.
T Consensus 86 v~~ 88 (105)
T 2aje_A 86 VLN 88 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 733
No 406
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=39.38 E-value=1.9e+02 Score=25.62 Aligned_cols=95 Identities=8% Similarity=-0.078 Sum_probs=53.0
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC--CCceEEEeecCccccccccc--CCC
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN--SSRFCFLLSTRAGGLGINLA--TAD 697 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~--~~~~v~Llstragg~GINL~--~ad 697 (1104)
..|..|..++.....+..+ ....+..+.+|-.++...-...+....... ....+++++......-.... .|+
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 3677777776665555544 345678888887766555555566555431 12334555554322112221 233
Q ss_pred EEEEECCCCChhhHHHHHHhhHhhC
Q 001302 698 TVIIYDSDWNPHADLQAMARAHRLG 722 (1104)
Q Consensus 698 ~VIi~D~~wNp~~~~Qa~gR~hRiG 722 (1104)
.+ +--++++....+++.++.+-+
T Consensus 101 ~~--l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 101 AY--LVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EE--EESSCCHHHHHHHHHHHHHHH
T ss_pred eE--EeccCCHHHHHHHHHHHHhhh
Confidence 33 335788999988888886543
No 407
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=39.13 E-value=19 Score=34.17 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHHHHHc
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~~~~~ 356 (1104)
...+.+.+|.-+.|+|||..|-++... .. |++.|-...+...|...+-...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~----~~-~~~~~~~~~~~~~~~~~~~~~a 74 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKN----GT-PWVSPARVEYLIDMPMELLQKA 74 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCT----TS-CEECCSSTTHHHHCHHHHHHHT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHh----CC-CeEEechhhCChHhhhhHHHhC
Confidence 356778999999999999766443322 11 5555444444444444443333
No 408
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=38.89 E-value=41 Score=39.34 Aligned_cols=57 Identities=4% Similarity=-0.156 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHH
Q 001302 294 LNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWER 350 (1104)
Q Consensus 294 v~wl~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~ 350 (1104)
++.+...+..+.-.+|+-..|+|||.-++.++..+......++|++.-.....+...
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 288 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 444444566777789999999999999999988876543348888877555444433
No 409
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.83 E-value=5.1 Score=32.30 Aligned_cols=44 Identities=20% Similarity=0.579 Sum_probs=28.9
Q ss_pred cccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcC
Q 001302 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPEC 95 (1104)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C 95 (1104)
....|.+|...-. .+.. .|+..||..|+..-+.. ....-.||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 3467999986432 2222 79999999998655542 1234568887
No 410
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=38.74 E-value=5.2 Score=45.10 Aligned_cols=54 Identities=19% Similarity=0.460 Sum_probs=36.5
Q ss_pred ccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCCccccc
Q 001302 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (1104)
Q Consensus 49 ~~~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ieki 105 (1104)
.....|.+|...-.-.....|+..||..|+..-+.. ..-.||.|..+......+
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCCceeE
Confidence 334689999876555555689999999998544331 223699999865544333
No 411
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=38.20 E-value=33 Score=30.79 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~ 1012 (1104)
.||..+-..+++++.+||. .|..|+..|.+.|..+++..-..
T Consensus 58 ~Wt~eEd~~L~~~~~~~G~---~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 58 SWTEEEDRIIYQAHKRLGN---RWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCHHHHHHHHHHHHHHSS---CHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHHHcCCCCHHHHHHHHHH
Confidence 4777777899999999994 58999999999999999966443
No 412
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=38.07 E-value=44 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHHHHHHHhhh
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHIT 1018 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~~~f~~~~~ 1018 (1104)
.||.-+-..++.++.+||. .|..||..|.+.|..+++..-..+..++.
T Consensus 64 ~WT~eEd~~L~~~v~~~G~---~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGR---QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCS---CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHCc---CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 3777777889999999994 58999999999999999977666666544
No 413
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=37.41 E-value=19 Score=39.47 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=23.5
Q ss_pred HhhcCCCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 299 FSWSKQTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 299 ~~~~~~~~~ILademGlGKTiqai~~l~~l 328 (1104)
..+..+.+.+|..+.|+|||..+-++...+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 333457899999999999999887776654
No 414
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=37.36 E-value=15 Score=38.39 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=35.0
Q ss_pred ccchhhhhhhccCCccceeeeeeeeeccccccccccCCccccHHHHHHHHHh
Q 001302 191 WTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1104)
Q Consensus 191 ~~~verIi~~r~~~~~~~yLVKWkgL~Y~~~tWe~~~~~~~~~~~i~~~~~~ 242 (1104)
+..+..++..+..++..+||+|| .++++++|.....+. +..++.|..-
T Consensus 186 ~~~~~~~~~~~~~~~~~e~l~~~--~~~~~~~w~~~~~i~--~~li~~y~~~ 233 (244)
T 3ui2_A 186 YAEVDEIVEKRGKGKDVEYLVRW--KDGGDCEWVKGVHVA--EDVAKDYEDG 233 (244)
T ss_dssp EEEEEEEEEEESCTTSCEEEEEE--SSSSCEEEEESTTBC--HHHHHHHHHH
T ss_pred cccHHHHHHHhccCcchhhhhhh--cCCCCCCcCcchhcC--HHHHHHHHHH
Confidence 34455666666666788999999 468899999877654 6778888763
No 415
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=37.22 E-value=5.9 Score=36.97 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=31.2
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-.--..-.|+..||..|+...+. .....||.|..+.
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFR---AQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh---HCcCCCCCCCccC
Confidence 467999986432111127999999999966554 2344799998754
No 416
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=36.78 E-value=77 Score=41.05 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHHHHHhh---CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEe
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLL 682 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Ll 682 (1104)
.|||-.+..-.+......|.++||.+.....+.-+.+.|.. .++++..+.|+++..+|...+..+..+... +++
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~---IlV 179 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH---ILV 179 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS---EEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC---EEE
Confidence 67887765555555557788999999998887777776665 678999999999998888888888765444 444
Q ss_pred ecC-cccc---cccccCCCEEEEECC
Q 001302 683 STR-AGGL---GINLATADTVIIYDS 704 (1104)
Q Consensus 683 str-agg~---GINL~~ad~VIi~D~ 704 (1104)
+|. ..-. -+++...+.||+=+-
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 443 2211 145567777777554
No 417
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.63 E-value=7.8 Score=35.19 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=31.6
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-.--.-..|+..||..|+...+... .+...||.|....
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcC
Confidence 45799998643211113799999999986555432 3446899998643
No 418
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=36.44 E-value=15 Score=33.49 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=31.2
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
+..|.+|...-. -+. -.|+..||..|+..-+.. +...||.|....
T Consensus 15 ~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEK---ASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCT---TTSBCTTTCCBC
T ss_pred CCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhH---CcCCCCCCCccc
Confidence 467999986432 111 279999999999766542 356899998643
No 419
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=36.25 E-value=13 Score=31.34 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=22.0
Q ss_pred hhhhhhhhcCcccccccccchHhHHHHhhcChhH
Q 001302 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (1104)
Q Consensus 130 ~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~ 163 (1104)
+..|||||+|..- ++|||...+.. .+|.+
T Consensus 30 el~fLvkWkg~d~--~dlVpa~~a~~---k~Pq~ 58 (74)
T 2fmm_A 30 ELMFLMKWKNSDE--ADLVPAKEANV---KCPQV 58 (74)
T ss_dssp EEEEEEEETTCSC--CEEEEHHHHHH---HCHHH
T ss_pred cEEEEEEECCCCc--ccEEEHHHHhh---hChHH
Confidence 3589999999765 67999998753 35653
No 420
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.11 E-value=19 Score=29.08 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCcccChhhhHHHHHHhhhccccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVSCF 1103 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~~~ 1103 (1104)
....||+|||..++.++.+||=.|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w 34 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNF 34 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCH
Confidence 346799999999999999999544
No 421
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=35.96 E-value=21 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.9
Q ss_pred CCcccChhhhHHHHHHhhhcc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYV 1100 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G 1100 (1104)
....||.+||..|+.+|-+||
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g 37 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP 37 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC
Confidence 446799999999999999998
No 422
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.67 E-value=4.9 Score=34.32 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=30.9
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. ..|+..||..|+..-+.. .-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA----TPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH----CSBCSSSCCBC
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC----CCcCCCcCccc
Confidence 467999986533 222 579999999998655532 34799998754
No 423
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=35.57 E-value=43 Score=27.25 Aligned_cols=39 Identities=10% Similarity=0.343 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHcCCCCcchhhhchhcc--CCCHHHHHHH
Q 001302 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK--QKSYEEIREY 1009 (1104)
Q Consensus 969 F~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~--~Ks~~ev~~y 1009 (1104)
||..+=...+.++.+||... |..|+..+. +.|..+++.-
T Consensus 14 WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 14 WTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp CCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHHHH
Confidence 67777788999999999754 788998754 8899998843
No 424
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=35.35 E-value=39 Score=35.12 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=32.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe-CcccHHHHH
Q 001302 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA-PLSTLRNWE 349 (1104)
Q Consensus 306 ~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~-P~s~l~qW~ 349 (1104)
+.++....|.|||..++.+...+...+....++.+ |..-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 57889999999999999999999887655444444 444444443
No 425
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.68 E-value=7 Score=33.33 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=31.8
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCC--CCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAP--PSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~--p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. ..|+..||..|+..-+... ..+...||.|....
T Consensus 19 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 467999986532 222 3599999999986543321 23467899998754
No 426
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=34.65 E-value=59 Score=30.20 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=37.2
Q ss_pred EEEEecchhHH-------HHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 627 VLIYSQFQHML-------DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 627 vLIFsq~~~~l-------diL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
|.||+...... ..+..+|...|+.|.-+|=+...+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 56776654432 5788899999999999999999999999999984
No 427
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.59 E-value=1e+02 Score=27.39 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=42.1
Q ss_pred eEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC
Q 001302 626 RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1104)
Q Consensus 626 kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~ 674 (1104)
-.+|||.....|.-|...+...|..+..+.+......|...+..|...+
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 3578898888888888888889999999999999999999999997543
No 428
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=34.45 E-value=1.2e+02 Score=32.51 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
..+.-..|.|||..+..++..+...+ +.++++.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~ 133 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVA 133 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEec
Confidence 34557899999998888777765543 4666654
No 429
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.81 E-value=2.9 Score=34.30 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=32.1
Q ss_pred cccccccccCC-------CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 50 KDDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 50 ~~~~C~~C~~~-------~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
....|.+|... +..+....|+..||..|+..-+.. .-.||.|....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 66 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 66 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCcc
Confidence 34679999863 234456689999999999655433 23699998653
No 430
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.80 E-value=66 Score=32.89 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=36.4
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHHHHH
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~~E~ 352 (1104)
+..|.-.+|+-+.|+|||..++.++..+...+ ++++++.-.....+..+.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-EPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEESSSCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEEccCCHHHHHHHH
Confidence 45667788999999999999988887766542 4778777655544444433
No 431
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=33.77 E-value=1.8e+02 Score=25.84 Aligned_cols=75 Identities=9% Similarity=-0.010 Sum_probs=37.5
Q ss_pred CcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCccc-----ccc-cccCCCEEEEECCCCChhhHHHHHHhhHhhC
Q 001302 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG-----LGI-NLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1104)
Q Consensus 649 ~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg-----~GI-NL~~ad~VIi~D~~wNp~~~~Qa~gR~hRiG 722 (1104)
+..+.+|-.++...-...+..+........+++++..... ..+ ....+...-++.-+.++....+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 5666667666655555555555543333334444443321 111 1122333333445677777777777766544
Q ss_pred C
Q 001302 723 Q 723 (1104)
Q Consensus 723 Q 723 (1104)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 432
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.77 E-value=23 Score=32.47 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=30.0
Q ss_pred cccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
....|.+|...-. -+.-..|+..|+..|+...+. -.||.|...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~ 64 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTP 64 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCB
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCc
Confidence 3567999986432 222236999999999965544 469999864
No 433
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.69 E-value=40 Score=34.55 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=21.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHh
Q 001302 305 THVILADEMGLGKTIQSIAFLASLF 329 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~ 329 (1104)
++.+++-..|+|||..|.+++..+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577899999999999999888763
No 434
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.35 E-value=9.1 Score=32.56 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=31.6
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCC--CCCCCCccCcCCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKA--PPSGSWRCPECVSPLN 100 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~--~p~~~W~C~~C~~~~~ 100 (1104)
...|.+|...-. .+. -.|+..||..|+..-+.. ...+.-.||.|.....
T Consensus 19 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 467999987532 122 269999999998644322 1123567999987543
No 435
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.33 E-value=2.4e+02 Score=24.92 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=44.5
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhC-CCcEEEEecCCCh-HHHHHHHHHHccCCCCceEEEeecCccccc-ccccCCCE
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGG-AERQIRIDRFNAKNSSRFCFLLSTRAGGLG-INLATADT 698 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~-~~R~~~i~~Fn~~~~~~~v~Llstragg~G-INL~~ad~ 698 (1104)
..|..|..++.....+..+ ... ......+|-.++. ..-...+...........+++++....... .....+.
T Consensus 27 ~~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~- 101 (132)
T 2rdm_A 27 DAGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS- 101 (132)
T ss_dssp HTTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC-
T ss_pred HcCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc-
Confidence 3466666555444444333 233 5667777755442 222333333332222222344444332211 1111122
Q ss_pred EEEECCCCChhhHHHHHHhhHhhCCC
Q 001302 699 VIIYDSDWNPHADLQAMARAHRLGQT 724 (1104)
Q Consensus 699 VIi~D~~wNp~~~~Qa~gR~hRiGQ~ 724 (1104)
-++.-+.++....+++.++.+.++.
T Consensus 102 -~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 102 -IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp -EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred -ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 1334567788888888777775543
No 436
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.01 E-value=25 Score=30.22 Aligned_cols=38 Identities=24% Similarity=0.711 Sum_probs=21.3
Q ss_pred eeecCCCCCccccCc-----CCCC---CCCCCCCCCccCcCCCCCCc
Q 001302 63 LMSCDTCTYAYHAKC-----LVPP---LKAPPSGSWRCPECVSPLND 101 (1104)
Q Consensus 63 l~~C~~C~~~~H~~C-----l~p~---l~~~p~~~W~C~~C~~~~~~ 101 (1104)
...|..|+..|-..= -.|| ..+. ..+|.||.|......
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedl-PddW~CPvCga~K~~ 72 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDI-PDDWSCPDCGAAKSD 72 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTS-CTTCCCTTTCCCGGG
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHC-CCCCcCCCCCCCHHH
Confidence 455666666654321 1122 2233 368999999976543
No 437
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.86 E-value=30 Score=28.85 Aligned_cols=42 Identities=36% Similarity=0.755 Sum_probs=23.5
Q ss_pred eeecCCCCCccccCcC-----CCCC---CCCCCCCCccCcCCCCCCccccc
Q 001302 63 LMSCDTCTYAYHAKCL-----VPPL---KAPPSGSWRCPECVSPLNDIDKI 105 (1104)
Q Consensus 63 l~~C~~C~~~~H~~Cl-----~p~l---~~~p~~~W~C~~C~~~~~~ieki 105 (1104)
...|..|...|...== .||- .+. ..+|.||.|......-+++
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~l-Pddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDL-SDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGS-CTTCBCTTTCCBGGGEEEC
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhC-CCCCcCCCCCCCHHHceEc
Confidence 4567777766653211 1111 223 3689999999865444443
No 438
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=32.81 E-value=49 Score=35.35 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l 328 (1104)
...+.+|.-+.|+|||..+-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46678999999999999988777766
No 439
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=32.60 E-value=85 Score=40.85 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCeEEEEecchhHHHHHH----HHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEE
Q 001302 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l~~~g~kvLIFsq~~~~ldiL~----~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~L 681 (1104)
.+||-......+-.....|.++||.+..+..+.-.. +.+...++++..++|..+..++...+.....+..+ ++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d---Iv 710 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---IL 710 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---EE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 467765544333344557889999998876554443 44444578899999999999999999888765444 45
Q ss_pred eec-CcccccccccCCCEEEEECC
Q 001302 682 LST-RAGGLGINLATADTVIIYDS 704 (1104)
Q Consensus 682 lst-ragg~GINL~~ad~VIi~D~ 704 (1104)
++| ......+++...+.||+=+-
T Consensus 711 V~T~~ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESG
T ss_pred EECHHHHhCCccccccceEEEech
Confidence 555 44455567766666666544
No 440
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.43 E-value=28 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=20.5
Q ss_pred eecCCCCCccccCcC-----CCCC---CCCCCCCCccCcCCCCCC
Q 001302 64 MSCDTCTYAYHAKCL-----VPPL---KAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 64 ~~C~~C~~~~H~~Cl-----~p~l---~~~p~~~W~C~~C~~~~~ 100 (1104)
..|..|+..|...== .||- .+. ..+|.||.|.....
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDI-PADWVCPDCGVGKI 47 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGS-CTTCCCTTTCCCGG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHC-CCCCcCCCCCCCHH
Confidence 457777766653211 1111 223 36899999987543
No 441
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.36 E-value=2.8e+02 Score=24.96 Aligned_cols=19 Identities=11% Similarity=-0.045 Sum_probs=10.6
Q ss_pred ECCCCChhhHHHHHHhhHh
Q 001302 702 YDSDWNPHADLQAMARAHR 720 (1104)
Q Consensus 702 ~D~~wNp~~~~Qa~gR~hR 720 (1104)
+.-+.++....+++.++.+
T Consensus 105 l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 105 VMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EETTCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 3345666666666655544
No 442
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.28 E-value=2e+02 Score=24.79 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=44.2
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCccccccccc--CCCEEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLA--TADTVI 700 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~--~ad~VI 700 (1104)
.|..|..++.....+..+ ....+....+|-.++...-...+..+........+++++...... .... .|+..+
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 466666555544444433 334567777776655333334444443222222234444432221 2221 244333
Q ss_pred EECCCCChhhHHHHHHhhH
Q 001302 701 IYDSDWNPHADLQAMARAH 719 (1104)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~h 719 (1104)
.-++++....+++.++.
T Consensus 99 --~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 --VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp --ECCSSTHHHHHHHHHHT
T ss_pred --ECCCCHHHHHHHHHHHh
Confidence 35677888877777654
No 443
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=31.73 E-value=50 Score=43.18 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=36.3
Q ss_pred EEcCCCchHHHHHHHHHHHHhcCCC--CceEEEeCcccHHHHHHHHHHHcC
Q 001302 309 LADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPLSTLRNWEREFATWAP 357 (1104)
Q Consensus 309 LademGlGKTiqai~~l~~l~~~~~--~p~LIV~P~s~l~qW~~E~~~~~p 357 (1104)
+....|+|||.+.+.-+.++...+. .++|+|||....-+-+..+....+
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 3346899999999988888876433 489999998877665566655443
No 444
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.63 E-value=9.2 Score=31.71 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=32.2
Q ss_pred ccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...- +-+....|...||..|+...+.. .-.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCccc
Confidence 46799998653 34445689999999998655432 24699998754
No 445
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=7.4 Score=33.54 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=32.0
Q ss_pred ccccccccCCCCe----eecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESENL----MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~l----~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-.. ..--.|+..||..|+..-+... ...-.||.|....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcc
Confidence 4669999864221 2333799999999996554432 2346899999753
No 446
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=31.06 E-value=34 Score=35.52 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~ 333 (1104)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 466778999999999999999987754
No 447
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.41 E-value=1.4e+02 Score=26.68 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCeEEEEec------chhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHH
Q 001302 615 KMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1104)
Q Consensus 615 ~lL~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~F 670 (1104)
..+..+.. .++|+||+. +=........+|...|++|..++=....+.++.+.+..
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 34444443 568999998 45677888889999999999988766655555554443
No 448
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=30.37 E-value=9 Score=32.24 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=31.6
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. ..|+..|+..|+..-+.. +.-.||.|..+.
T Consensus 8 ~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDA---GHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTT---TCCBCTTTCCBC
T ss_pred cCCCCCccccccCCEE-cCCCCeecHHHHHHHHHH---CcCCCCCCcCCC
Confidence 467999986532 222 269999999998665542 356799998644
No 449
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=30.22 E-value=42 Score=35.20 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~ 333 (1104)
.|.+-++|.|||+.+++++..+...+.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 467889999999999999999987654
No 450
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=30.13 E-value=17 Score=31.83 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=24.9
Q ss_pred cccccccCCCC--eeecCCCCCccccCcCCCCC
Q 001302 52 DSCQACGESEN--LMSCDTCTYAYHAKCLVPPL 82 (1104)
Q Consensus 52 ~~C~~C~~~~~--l~~C~~C~~~~H~~Cl~p~l 82 (1104)
..|.+|+..+. .-.|..|+-..|..|...|.
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred eEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence 46999987544 78899999999999985543
No 451
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.01 E-value=2.7e+02 Score=24.88 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=41.4
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc--CCCCceEEEeecCcccccc--cccCCCE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA--KNSSRFCFLLSTRAGGLGI--NLATADT 698 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~--~~~~~~v~Llstragg~GI--NL~~ad~ 698 (1104)
.|..|..++.....++.+ ....+..+.+|-.++...-...+..++. ......+++++......-+ ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 455555555444444333 3344566666655554444445555543 1122223344333211111 1211222
Q ss_pred EEEECCCCChhhHHHHHHhhHh
Q 001302 699 VIIYDSDWNPHADLQAMARAHR 720 (1104)
Q Consensus 699 VIi~D~~wNp~~~~Qa~gR~hR 720 (1104)
.-++.-+.++....+++.++.+
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHH
Confidence 2223345666776666666654
No 452
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=36.08 E-value=11 Score=33.08 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.0
Q ss_pred CCcccChhhhHHHHHHhhhcccc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYVSC 1102 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G~~ 1102 (1104)
....||.|||..|+.++.+||-.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~ 37 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRN 37 (89)
Confidence 34679999999999999999964
No 453
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.73 E-value=25 Score=35.72 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=0.0
Q ss_pred EEEEcCcccc---cCcccHHHHHHHhccccc----EEEEecCC
Q 001302 431 CMIVDEGHRL---KNKDSKLFSSLKQYSTRH----RVLLTGTP 466 (1104)
Q Consensus 431 ~vIvDEaHrl---kn~~s~~~~~l~~l~~~~----rllLTgTP 466 (1104)
+|||||||.+ .+........+..+.... .++|+|.|
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
No 454
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.62 E-value=31 Score=29.98 Aligned_cols=37 Identities=24% Similarity=0.579 Sum_probs=21.3
Q ss_pred eeecCCCCCccccC-----cCCCC---CCCCCCCCCccCcCCCCCC
Q 001302 63 LMSCDTCTYAYHAK-----CLVPP---LKAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 63 l~~C~~C~~~~H~~-----Cl~p~---l~~~p~~~W~C~~C~~~~~ 100 (1104)
...|..|+..|... +-.|| ..+. ..+|.||.|.....
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedl-PddW~CPvCga~K~ 79 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDI-PDDWCCPDCGATKE 79 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGC-CTTCCCSSSCCCGG
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHC-CCCCCCCCCCCCHH
Confidence 56667777666532 11122 1233 36899999987543
No 455
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.45 E-value=2e+02 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=15.1
Q ss_pred CCeEEEEecchhHHHHHHHHHhhCCCcE
Q 001302 624 GHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (1104)
Q Consensus 624 g~kvLIFsq~~~~ldiL~~~L~~~g~~~ 651 (1104)
+.+|||..........|...|...|+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v 33 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQV 33 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEE
Confidence 3455555555555555555555555543
No 456
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=29.19 E-value=71 Score=32.23 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHH-hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 293 gv~wl~~-~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
+++.+.. .+..|.-.+|.-+.|+|||..+..++..+... .++++++......
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~ 63 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESR 63 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCH
Confidence 3444433 34567778899999999999888777665433 2467776654333
No 457
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=28.51 E-value=56 Score=36.55 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=40.1
Q ss_pred HHHHHHH--hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHH
Q 001302 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1104)
Q Consensus 293 gv~wl~~--~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW 348 (1104)
++..+.. .+..+.-.+|+-+.|+|||..++.++..+...+ +++++|.......+|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g-~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG-GTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-CeEEEEECCCChhHH
Confidence 4555543 455677788999999999999999888775543 488888776665555
No 458
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.19 E-value=18 Score=35.10 Aligned_cols=45 Identities=20% Similarity=0.588 Sum_probs=34.0
Q ss_pred cccccccccCC-----CCeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCC
Q 001302 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1104)
Q Consensus 50 ~~~~C~~C~~~-----~~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1104)
+...|..|..+ +.-..|..|...+-..|-. ...+...|.|..|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~---~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH---AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE---CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc---ccCCCCcEeeHHHHH
Confidence 46789999986 3357888899888888862 233567899999974
No 459
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=27.98 E-value=15 Score=33.26 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=32.5
Q ss_pred ccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...- +-+....|+..||..|+...+... -.||.|....
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS----KYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC----CcCcCCCccc
Confidence 56799998653 345556899999999986555432 4799998654
No 460
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=27.94 E-value=61 Score=35.92 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 303 ~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
...+.+|.-++|+|||..|-++...+ ..|++.+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEechH
Confidence 45678999999999999887777665 2366665443
No 461
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=27.88 E-value=1.6e+02 Score=26.37 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCeEEEEec------chhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHH
Q 001302 615 KMMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 615 ~lL~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~ 669 (1104)
..+..+. ..++|+||+. .-........+|...|++|..++=....+.|+.+...
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 3344444 3569999995 4445677888899999999999877666555555443
No 462
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=27.45 E-value=14 Score=32.67 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=31.9
Q ss_pred ccccccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~-~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...- +-+....|+..||..|+..-+.. .-.||.|....
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBC
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcC
Confidence 46799998653 33444579999999998655543 23799998644
No 463
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=27.40 E-value=42 Score=35.40 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERI 333 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~ 333 (1104)
.|-+-++|.|||+.+++++..+.+.+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 456789999999999999999987754
No 464
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.27 E-value=63 Score=35.36 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=31.3
Q ss_pred cHHHHHHHH-HHHHhh--cCCCcEEEEcCCCchHHHHHHHHHHHHhc
Q 001302 287 HPYQLEGLN-FLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1104)
Q Consensus 287 ~~yQ~~gv~-wl~~~~--~~~~~~ILademGlGKTiqai~~l~~l~~ 330 (1104)
|+-|...+. +|.... ..+.+.+|.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666553 443333 34556789999999999999999888864
No 465
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=26.75 E-value=53 Score=30.60 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCcchhhhchhccCCCHHHHHHHH
Q 001302 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYG 1010 (1104)
Q Consensus 968 GF~~~~rr~F~~~~~k~G~~~~~~~~i~~~l~~Ks~~ev~~y~ 1010 (1104)
.||..+-..+++++.+||. .|..|+..|.+.|..+++..-
T Consensus 81 ~WT~eEd~~L~~~~~~~G~---~W~~Ia~~l~gRt~~~~k~r~ 120 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGN---RWAEIAKLLPGRTDNAVKNHW 120 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCS---CHHHHGGGSTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCc---CHHHHHHHCCCCCHHHHHHHH
Confidence 4777777889999999994 589999999999999999653
No 466
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.62 E-value=29 Score=37.89 Aligned_cols=37 Identities=27% Similarity=0.777 Sum_probs=27.8
Q ss_pred cccccccccCC---------C-----CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCC
Q 001302 50 KDDSCQACGES---------E-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1104)
Q Consensus 50 ~~~~C~~C~~~---------~-----~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1104)
...+|.+||.. | ..+.|..|...||+. .+.|+.|-+.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~------------R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV------------RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC------------TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec------------CcCCcCCCCC
Confidence 45789999841 1 179999999999843 3479999875
No 467
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=26.59 E-value=2.1e+02 Score=26.10 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCeEEEEecc------hhHHHHHHHHHhhCCCc---EEEEecCCChHHHHHHHHHH
Q 001302 615 KMMVKLKEQGHRVLIYSQF------QHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRF 670 (1104)
Q Consensus 615 ~lL~~l~~~g~kvLIFsq~------~~~ldiL~~~L~~~g~~---~~ridG~~~~~~R~~~i~~F 670 (1104)
+.+..+.. .++|+||+.. -........+|...|++ |..++=....+.|+.+....
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s 70 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS 70 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh
Confidence 34444443 5689999984 55677788888888998 88888766655555554443
No 468
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.49 E-value=42 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.6
Q ss_pred CCCCCcccChhhhHHHHHHhhhccc
Q 001302 1077 GLRGGKFWKEEHDSLLLRAVLKYVS 1101 (1104)
Q Consensus 1077 ~~~~~~~~~~eeD~~LL~~i~~~G~ 1101 (1104)
+.+....||.+|+..|..+|-.|+-
T Consensus 4 ~~~~~~~WT~eE~k~fe~ALa~~~~ 28 (73)
T 1wgx_A 4 GSSGDKEWNEKELQKLHCAFASLPK 28 (73)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHHSCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4445678999999999999988864
No 469
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=26.45 E-value=40 Score=36.17 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 305 ~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
...+|.-+.|+|||..|-++...+... .+|++.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 467899999999999988777766443 23555553
No 470
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=26.45 E-value=1.9e+02 Score=32.88 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=24.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEe
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~ 340 (1104)
.+++-..|.|||..+..++..+...+ +.++++.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g-~~Vllvd 133 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVA 133 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEee
Confidence 44667899999999888887776553 4556554
No 471
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=26.35 E-value=36 Score=23.85 Aligned_cols=14 Identities=36% Similarity=0.907 Sum_probs=11.4
Q ss_pred CCCCCccCcCCCCC
Q 001302 86 PSGSWRCPECVSPL 99 (1104)
Q Consensus 86 p~~~W~C~~C~~~~ 99 (1104)
.++.|+|..|.+..
T Consensus 18 CS~gw~CqaC~nfa 31 (38)
T 4cpa_I 18 CSGAWFCQACWNSA 31 (38)
T ss_dssp SCCCSSCCEEETTT
T ss_pred cccchHHHHHHhhc
Confidence 47889999998754
No 472
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=26.16 E-value=42 Score=35.78 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l 328 (1104)
.++.+|.-+.|+|||..+.+++..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3457889999999999999888753
No 473
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.13 E-value=2.2e+02 Score=23.88 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCeEEEEecchhHH--HHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHc
Q 001302 611 QLLDKMMVKLKEQGHRVLIYSQFQHML--DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1104)
Q Consensus 611 ~~L~~lL~~l~~~g~kvLIFsq~~~~l--diL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn 671 (1104)
+-+.++++.++..|+..+||.+-...- ..........|.+|-.+... .+++-.+.+..|-
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 346678888999999999998865543 34555566789999988754 5566666777774
No 474
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.73 E-value=32 Score=26.84 Aligned_cols=35 Identities=31% Similarity=0.806 Sum_probs=20.0
Q ss_pred eecCCCCCccccCc-----CCCCC---CCCCCCCCccCcCCCCC
Q 001302 64 MSCDTCTYAYHAKC-----LVPPL---KAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 64 ~~C~~C~~~~H~~C-----l~p~l---~~~p~~~W~C~~C~~~~ 99 (1104)
..|..|+..|...= -.+|- ... ..+|.||.|....
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~l-P~dw~CP~Cg~~K 45 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDL-PDDWVCPLCGAPK 45 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGS-CTTCBCTTTCCBG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHC-CCCCcCCCCCCCH
Confidence 45677776664321 11121 223 3689999998754
No 475
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=25.47 E-value=1.4e+02 Score=31.74 Aligned_cols=46 Identities=7% Similarity=-0.117 Sum_probs=33.1
Q ss_pred HHHhhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCc
Q 001302 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1104)
Q Consensus 297 l~~~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~ 342 (1104)
+...+..|.-.+|+-..|.|||..+..++..+......+++++...
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3445677778889999999999988877776654432377776553
No 476
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.26 E-value=3.3e+02 Score=23.64 Aligned_cols=46 Identities=7% Similarity=-0.052 Sum_probs=22.0
Q ss_pred hCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.|..|..+......++.+ ....+....+|-.++...-...+.....
T Consensus 25 ~g~~v~~~~~~~~al~~~----~~~~~dlii~D~~~p~~~g~~~~~~lr~ 70 (120)
T 3f6p_A 25 EGYEVHCAHDGNEAVEMV----EELQPDLILLDIMLPNKDGVEVCREVRK 70 (120)
T ss_dssp TTCEEEEESSHHHHHHHH----HTTCCSEEEEETTSTTTHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHH----hhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 455555444433333322 3344556666665555444445544443
No 477
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=25.22 E-value=16 Score=31.85 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=19.0
Q ss_pred hhhhhhhhcCcccccccccchHhHHHHhhcChhH
Q 001302 130 VKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRL 163 (1104)
Q Consensus 130 ~~eylVKwk~~Sy~h~~W~~~~~l~~~~~~~~~~ 163 (1104)
+..|||||+|.+-.. +||...+.. .+|.+
T Consensus 40 el~fLVKWKg~~e~D--lVpa~ean~---k~Pql 68 (87)
T 3p7j_A 40 RLTFLIQFKGVDQAE--MVPSSVANE---KIPRM 68 (87)
T ss_dssp EEEEEEEETTCSSCE--EEEHHHHHH---HCHHH
T ss_pred cEEEEEEECCCCccc--eEeHHHHhh---hChHH
Confidence 358999999988766 555554432 35654
No 478
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=25.11 E-value=70 Score=29.34 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhC-CeEEEEec-chhHHHHHHHHHhhCCCcEEEEecCCCh
Q 001302 611 QLLDKMMVKLKEQG-HRVLIYSQ-FQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (1104)
Q Consensus 611 ~~L~~lL~~l~~~g-~kvLIFsq-~~~~ldiL~~~L~~~g~~~~ridG~~~~ 660 (1104)
..+...+..+ ..+ .+|+|||+ .-.........|...|+++..++|++..
T Consensus 76 ~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 76 KDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3344444444 345 89999995 5445567778888899999999998753
No 479
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=25.09 E-value=84 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHH
Q 001302 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1104)
Q Consensus 304 ~~~~ILademGlGKTiqai~~l~~l 328 (1104)
..+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4568899999999999887776654
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=24.63 E-value=41 Score=34.62 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=22.6
Q ss_pred EcCCCchHHHHHHHHHHHHhcCCCCceEEE
Q 001302 310 ADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1104)
Q Consensus 310 ademGlGKTiqai~~l~~l~~~~~~p~LIV 339 (1104)
.---|.|||..|+.++..+...+ .++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g-~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY-DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC-SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 45679999999999998887664 466665
No 481
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=24.42 E-value=2.1e+02 Score=29.23 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=46.2
Q ss_pred hCCeEEEEecchhHHH----HHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCc-c-----ccccc
Q 001302 623 QGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA-G-----GLGIN 692 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ld----iL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstra-g-----g~GIN 692 (1104)
.+.++||.+.....+. .+..++...++.+..+.|+.+.......+.. +.. ++++|-. . ...++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~---I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVE---ICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCS---EEEECHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCC---EEEECHHHHHHHHHcCCCC
Confidence 3668999998776544 4455556678999999999887666555433 122 4555531 1 12346
Q ss_pred ccCCCEEEEEC
Q 001302 693 LATADTVIIYD 703 (1104)
Q Consensus 693 L~~ad~VIi~D 703 (1104)
+...+.||+=+
T Consensus 174 ~~~~~~lViDE 184 (242)
T 3fe2_A 174 LRRTTYLVLDE 184 (242)
T ss_dssp CTTCCEEEETT
T ss_pred cccccEEEEeC
Confidence 66777776644
No 482
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.28 E-value=17 Score=29.22 Aligned_cols=46 Identities=28% Similarity=0.704 Sum_probs=30.5
Q ss_pred ccccccccCC---CC-e-eecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGES---EN-L-MSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~---~~-l-~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
+..|.+|... +. . +.-..|+..||..|+..-+.. +.-.||.|....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCcc
Confidence 3569999872 22 1 122579999999998544322 345799998754
No 483
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=24.27 E-value=13 Score=35.94 Aligned_cols=45 Identities=27% Similarity=0.543 Sum_probs=31.2
Q ss_pred ccccccccCCCC-eeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCC
Q 001302 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1104)
Q Consensus 51 ~~~C~~C~~~~~-l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1104)
...|.+|...-. -+. ..|+..||..|+...+.. +.-.||.|....
T Consensus 78 ~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKA---QVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHh---CCCcCCCCCccC
Confidence 457999986432 222 479999999998655542 334799998754
No 484
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.98 E-value=3.8e+02 Score=23.79 Aligned_cols=91 Identities=8% Similarity=-0.027 Sum_probs=50.4
Q ss_pred hCCeEEEEecchhHHHHHHHHHhh-CCCcEEEEecCCChHHHHHHHHHHccCCCCceEEEeecCcccccccccC-CCEEE
Q 001302 623 QGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT-ADTVI 700 (1104)
Q Consensus 623 ~g~kvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~Llstragg~GINL~~-ad~VI 700 (1104)
.|..|..++.....+. .+.. ..+....+|-.++...-...+...........++++++....... ... |+.
T Consensus 38 ~g~~v~~~~~~~~al~----~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~~~~-- 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQ----HRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEHNLS-- 110 (138)
T ss_dssp TTCEEEEESSHHHHHH----TGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSSCEE--
T ss_pred cCCEEEEeCCHHHHHH----HHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHHHHh--
Confidence 4666666555444443 3344 567888888777654455666666654333344555512222222 222 333
Q ss_pred EECCCCChhhHHHHHHhhHh
Q 001302 701 IYDSDWNPHADLQAMARAHR 720 (1104)
Q Consensus 701 i~D~~wNp~~~~Qa~gR~hR 720 (1104)
++.-+.++....+++.++.+
T Consensus 111 ~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp EEESSCCHHHHHHHHHHTCC
T ss_pred eeeCCCCHHHHHHHHHHHHH
Confidence 33457788888888887754
No 485
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.90 E-value=1.7e+02 Score=24.95 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=40.4
Q ss_pred HhCCeEEEEecchhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHccCC--CCceEEEeecCccccccccc--CCC
Q 001302 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN--SSRFCFLLSTRAGGLGINLA--TAD 697 (1104)
Q Consensus 622 ~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~~~--~~~~v~Llstragg~GINL~--~ad 697 (1104)
..|..|..++.....+..+.. ..+....+|-.++...-...+....... ....+++++...... ... .++
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 346666665554444444432 3456666665554333333444443321 111223444332222 211 233
Q ss_pred EEEEECCCCChhhHHHHHHhhH
Q 001302 698 TVIIYDSDWNPHADLQAMARAH 719 (1104)
Q Consensus 698 ~VIi~D~~wNp~~~~Qa~gR~h 719 (1104)
.+ +.-+.++....+++.++.
T Consensus 97 ~~--l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 97 AI--LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EE--CSSCSTTHHHHHHHHTTC
T ss_pred Hh--ccCCCCHHHHHHHHHHHh
Confidence 32 234566666666665543
No 486
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=23.88 E-value=36 Score=30.06 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.3
Q ss_pred CcccChhhhHHHHHHhhhcc
Q 001302 1081 GKFWKEEHDSLLLRAVLKYV 1100 (1104)
Q Consensus 1081 ~~~~~~eeD~~LL~~i~~~G 1100 (1104)
...||.|||..|+.++-+||
T Consensus 8 ~~~WT~eEd~~L~~al~~~~ 27 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD 27 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 46799999999999999997
No 487
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=23.40 E-value=66 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeC
Q 001302 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1104)
Q Consensus 307 ~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P 341 (1104)
.|..-..|.|||.+++.++..+...+. ++|++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G~-rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcc
Confidence 345567899999999999998876643 6777655
No 488
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.08 E-value=75 Score=32.09 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=29.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhcCCCCceEEE--eCcccHHHHHH
Q 001302 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTLRNWER 350 (1104)
Q Consensus 308 ILademGlGKTiqai~~l~~l~~~~~~p~LIV--~P~s~l~qW~~ 350 (1104)
|..---|.|||..++.++..+...+ ++|+| -|...+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHHHHhc
Confidence 4455679999999999999887765 66665 35555566653
No 489
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.02 E-value=31 Score=24.15 Aligned_cols=12 Identities=25% Similarity=1.057 Sum_probs=10.0
Q ss_pred CCCCccCcCCCC
Q 001302 87 SGSWRCPECVSP 98 (1104)
Q Consensus 87 ~~~W~C~~C~~~ 98 (1104)
.|+|.|+.|...
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 689999999753
No 490
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.77 E-value=3e+02 Score=23.93 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=39.3
Q ss_pred HHHHHHHhCCeEEEEec------chhHHHHHHHHHhhCCCcEEEEecCCChHHHHHHHHHHcc
Q 001302 616 MMVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1104)
Q Consensus 616 lL~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R~~~i~~Fn~ 672 (1104)
.+..+.. .++|+||+. +-.....+..+|...++.|..++=......++.+...+..
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 3444444 457999985 4456777888888889999999987776666666665543
No 491
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=22.71 E-value=39 Score=27.08 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=16.5
Q ss_pred cccChhhhHHHHHHhhhc
Q 001302 1082 KFWKEEHDSLLLRAVLKY 1099 (1104)
Q Consensus 1082 ~~~~~eeD~~LL~~i~~~ 1099 (1104)
..||+|||..|+.-|-+|
T Consensus 3 ~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 3 IAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 469999999999999988
No 492
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=28.37 E-value=18 Score=31.45 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=22.8
Q ss_pred hhhhhhhcCcccccccccchHhHHH
Q 001302 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1104)
Q Consensus 131 ~eylVKwk~~Sy~h~~W~~~~~l~~ 155 (1104)
.+|+|-|.|+.-....|||++.|..
T Consensus 42 ~~YyVHY~GwNkR~DEWV~~~Rl~k 66 (85)
T 2lrq_A 42 VEYYIHYAGWSKNWDEWVPENRVLK 66 (85)
Confidence 5899999999999999999998865
No 493
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=22.62 E-value=2.1e+02 Score=32.09 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHH-HHhCCeEEEEecchhHHHHHHHHHhh-CCC---cEEEEecCCChHHHHHHHHHHccCCCCceEE
Q 001302 606 SSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTF-KKW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1104)
Q Consensus 606 ~S~Kl~~L~~lL~~l-~~~g~kvLIFsq~~~~ldiL~~~L~~-~g~---~~~ridG~~~~~~R~~~i~~Fn~~~~~~~v~ 680 (1104)
.+||-.....++..+ ...+.++||.+.....+.-..+.+.. .+. ++..++|.....++....... . ++
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-----~--iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-----K--VI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHC-----S--EE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCC-----C--EE
Confidence 567765554444333 34688999999987766655555433 355 899999999887766554321 1 23
Q ss_pred EeecCccc-----ccccccCCCEEEEECCCC--ChhhHHHHHHhhHh
Q 001302 681 LLSTRAGG-----LGINLATADTVIIYDSDW--NPHADLQAMARAHR 720 (1104)
Q Consensus 681 Llstragg-----~GINL~~ad~VIi~D~~w--Np~~~~Qa~gR~hR 720 (1104)
+.+..... ..+++...+.||+=+.+- +...+.+.+.+..+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 44433322 135667778888765542 22344444444444
No 494
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.18 E-value=3.1e+02 Score=23.75 Aligned_cols=17 Identities=0% Similarity=-0.130 Sum_probs=9.6
Q ss_pred CCCChhhHHHHHHhhHh
Q 001302 704 SDWNPHADLQAMARAHR 720 (1104)
Q Consensus 704 ~~wNp~~~~Qa~gR~hR 720 (1104)
-+.++....+++.++.+
T Consensus 108 kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 108 KPVDADQLVERAGALIG 124 (127)
T ss_dssp SSCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 35556666666655544
No 495
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.06 E-value=1.3e+02 Score=41.23 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=34.5
Q ss_pred hcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccH
Q 001302 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1104)
Q Consensus 301 ~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l 345 (1104)
+..+.+.+|.-+.|+|||..|++++......+ ..++++.....+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G-~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHAL 1467 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccccc
Confidence 45788899999999999999999988766543 367777766544
No 496
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=21.97 E-value=2.4e+02 Score=25.70 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHhCCeEEEEec------chhHHHHHHHHHhhCCCc-EEEEecCCChHHHHHHHHH
Q 001302 617 MVKLKEQGHRVLIYSQ------FQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDR 669 (1104)
Q Consensus 617 L~~l~~~g~kvLIFsq------~~~~ldiL~~~L~~~g~~-~~ridG~~~~~~R~~~i~~ 669 (1104)
+..+.. .++|+||+. +-........+|...|++ |..++=....+.++.+...
T Consensus 13 v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~ 71 (118)
T 2wem_A 13 LDALVK-KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 71 (118)
T ss_dssp HHHHHH-HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHH
T ss_pred HHHHhc-cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 333333 358999998 455677888899999995 9988877666655554443
No 497
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=21.95 E-value=89 Score=42.82 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHH--hhcCCCcEEEEcCCCchHHHHHHHHHHHHhcCCCCceEEEeCcccHHHHH
Q 001302 293 GLNFLRF--SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1104)
Q Consensus 293 gv~wl~~--~~~~~~~~ILademGlGKTiqai~~l~~l~~~~~~p~LIV~P~s~l~qW~ 349 (1104)
.+..+.- .+..+.-.+|+-+.|.|||.-++.++..+... .+++++|.-.....+|.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHH
Confidence 4555654 45677788999999999999999988877653 34899998887777775
No 498
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.85 E-value=47 Score=33.81 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=19.5
Q ss_pred CeeecCCCCCccccCcCCCCCCCCCCCCCccCcCCCCCC
Q 001302 62 NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1104)
Q Consensus 62 ~l~~C~~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1104)
....|..|+..|-- . .| |.||.|..+..
T Consensus 170 ~~~~C~~CG~i~~g---~-----~p---~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKG---E-----DF---EKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEES---S-----CC---SBCTTTCCBGG
T ss_pred cEEEECCCCCEEcC---c-----CC---CCCCCCCCChH
Confidence 46778888877541 1 22 99999987653
No 499
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.79 E-value=1.9e+02 Score=26.10 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=9.0
Q ss_pred CCChhhHHHHHHhhHhh
Q 001302 705 DWNPHADLQAMARAHRL 721 (1104)
Q Consensus 705 ~wNp~~~~Qa~gR~hRi 721 (1104)
+.++....+++.++.+-
T Consensus 105 P~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 105 PFRLDYLLERVKKIISS 121 (142)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 44555555555555543
No 500
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.77 E-value=52 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.6
Q ss_pred CCcccChhhhHHHHHHhhhcc
Q 001302 1080 GGKFWKEEHDSLLLRAVLKYV 1100 (1104)
Q Consensus 1080 ~~~~~~~eeD~~LL~~i~~~G 1100 (1104)
....||.|||..|..+|-+|+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p 27 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFP 27 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 456899999999999999887
Done!