Query 001303
Match_columns 1104
No_of_seqs 414 out of 3211
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0432 Valyl-tRNA synthetase 100.0 9E-256 2E-260 2202.1 84.1 967 119-1103 21-994 (995)
2 PLN02381 valyl-tRNA synthetase 100.0 7E-231 1E-235 2168.9 100.0 1055 48-1103 2-1061(1066)
3 COG0525 ValS Valyl-tRNA synthe 100.0 1E-229 3E-234 2042.0 81.2 872 140-1101 1-876 (877)
4 PTZ00419 valyl-tRNA synthetase 100.0 1E-210 2E-215 1996.4 94.2 957 132-1103 16-993 (995)
5 PRK05729 valS valyl-tRNA synth 100.0 4E-198 9E-203 1861.1 86.2 866 139-1101 4-873 (874)
6 PLN02943 aminoacyl-tRNA ligase 100.0 2E-194 3E-199 1828.5 88.0 873 139-1102 56-952 (958)
7 PRK14900 valS valyl-tRNA synth 100.0 1E-191 3E-196 1812.4 88.5 880 138-1102 13-905 (1052)
8 TIGR00422 valS valyl-tRNA synt 100.0 1E-190 2E-195 1794.6 83.7 856 140-1084 1-861 (861)
9 PTZ00427 isoleucine-tRNA ligas 100.0 8E-175 2E-179 1655.3 82.5 811 136-1008 64-1019(1205)
10 PRK06039 ileS isoleucyl-tRNA s 100.0 1E-173 2E-178 1648.1 83.5 837 137-1064 4-912 (975)
11 PLN02882 aminoacyl-tRNA ligase 100.0 5E-168 1E-172 1600.6 78.9 789 142-1009 6-894 (1159)
12 PRK05743 ileS isoleucyl-tRNA s 100.0 2E-167 4E-172 1578.8 72.9 786 122-1008 7-857 (912)
13 PRK13804 ileS isoleucyl-tRNA s 100.0 3E-166 6E-171 1570.8 76.4 788 122-1008 12-897 (961)
14 PLN02843 isoleucyl-tRNA synthe 100.0 9E-166 2E-170 1565.6 77.0 796 145-1009 4-901 (974)
15 PRK13208 valS valyl-tRNA synth 100.0 2E-165 5E-170 1552.9 74.4 782 139-1009 5-790 (800)
16 COG0060 IleS Isoleucyl-tRNA sy 100.0 3E-163 6E-168 1484.7 59.2 756 122-963 6-826 (933)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 7E-160 2E-164 1514.6 68.8 762 140-972 2-841 (861)
18 PLN02959 aminoacyl-tRNA ligase 100.0 3E-144 6E-149 1379.1 65.0 733 140-964 9-920 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 4E-142 9E-147 1351.6 64.1 732 148-990 2-842 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 2E-141 5E-146 1294.5 39.0 563 152-776 1-601 (601)
21 PRK12300 leuS leucyl-tRNA synt 100.0 1E-134 2E-139 1279.1 57.5 700 187-1003 1-805 (897)
22 TIGR00396 leuS_bact leucyl-tRN 100.0 4E-133 9E-138 1253.6 47.5 644 144-937 1-775 (842)
23 PRK00390 leuS leucyl-tRNA synt 100.0 4E-132 8E-137 1243.2 49.6 650 140-957 1-755 (805)
24 PLN02563 aminoacyl-tRNA ligase 100.0 4E-132 9E-137 1244.9 45.0 643 139-938 75-891 (963)
25 KOG0433 Isoleucyl-tRNA synthet 100.0 7E-129 2E-133 1112.4 56.4 788 121-1005 19-878 (937)
26 KOG0434 Isoleucyl-tRNA synthet 100.0 1E-128 2E-133 1097.9 53.0 787 140-1009 4-882 (1070)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 1E-105 2E-110 973.5 42.9 636 140-940 1-751 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 3E-101 6E-106 877.8 39.0 647 148-937 34-797 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 7.5E-88 1.6E-92 821.6 38.7 505 172-934 3-521 (556)
30 TIGR00398 metG methionyl-tRNA 100.0 3.7E-86 7.9E-91 802.4 42.6 485 174-916 1-503 (530)
31 cd00817 ValRS_core catalytic c 100.0 8.4E-87 1.8E-91 773.7 33.4 380 172-775 1-382 (382)
32 PRK00133 metG methionyl-tRNA s 100.0 5.3E-83 1.2E-87 790.1 42.1 484 172-916 2-503 (673)
33 PRK12267 methionyl-tRNA synthe 100.0 2.8E-82 6.1E-87 782.8 41.9 470 171-916 3-478 (648)
34 PLN02610 probable methionyl-tR 100.0 7.5E-81 1.6E-85 772.6 42.8 493 169-916 14-532 (801)
35 KOG0437 Leucyl-tRNA synthetase 100.0 4.4E-81 9.5E-86 715.2 34.7 722 147-964 15-911 (1080)
36 PRK11893 methionyl-tRNA synthe 100.0 1.4E-79 3.1E-84 743.0 41.6 464 172-916 1-476 (511)
37 PLN02224 methionine-tRNA ligas 100.0 7.2E-78 1.6E-82 726.6 41.7 478 159-916 51-546 (616)
38 COG0143 MetG Methionyl-tRNA sy 100.0 5.3E-77 1.2E-81 703.6 40.4 489 171-917 4-513 (558)
39 cd00818 IleRS_core catalytic c 100.0 1.4E-76 2.9E-81 677.7 28.7 338 172-775 1-338 (338)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.7E-66 3.6E-71 590.3 25.6 312 173-775 1-312 (312)
41 KOG0436 Methionyl-tRNA synthet 100.0 7.4E-64 1.6E-68 546.2 30.4 475 171-918 38-529 (578)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.5E-62 5.5E-67 568.1 16.6 374 174-797 1-390 (391)
43 cd00814 MetRS_core catalytic c 100.0 9.7E-60 2.1E-64 535.9 23.6 309 173-775 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 3E-55 6.6E-60 497.5 21.4 296 173-777 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 7.9E-46 1.7E-50 404.5 23.7 496 169-916 11-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 1.1E-41 2.4E-46 404.4 29.7 353 170-865 22-376 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.1E-36 2.4E-41 371.4 41.0 379 163-864 53-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 1.9E-36 4.1E-41 358.9 26.0 355 163-854 14-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 8.5E-35 1.9E-39 333.1 22.6 343 171-864 9-363 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 1E-34 2.2E-39 333.7 19.7 338 170-854 35-382 (411)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 4.7E-32 1E-36 318.9 26.9 360 173-854 25-399 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 1.3E-31 2.8E-36 317.9 22.7 362 170-864 79-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 6.3E-31 1.4E-35 312.7 23.2 339 173-854 250-607 (699)
54 cd00672 CysRS_core catalytic c 100.0 2.4E-30 5.2E-35 276.7 16.8 94 163-276 13-107 (213)
55 PRK01611 argS arginyl-tRNA syn 100.0 1.3E-28 2.9E-33 296.6 29.2 121 170-309 109-230 (507)
56 PRK14534 cysS cysteinyl-tRNA s 100.0 6E-29 1.3E-33 291.2 24.6 351 180-854 28-392 (481)
57 cd00674 LysRS_core_class_I cat 99.9 1.4E-26 3E-31 263.3 20.4 125 171-307 18-151 (353)
58 cd07961 Anticodon_Ia_Ile_ABEc 99.9 3.8E-26 8.1E-31 240.2 19.4 179 775-958 1-183 (183)
59 cd07960 Anticodon_Ia_Ile_BEm A 99.9 2.6E-24 5.7E-29 225.6 20.3 176 775-957 1-179 (180)
60 COG0215 CysS Cysteinyl-tRNA sy 99.9 2E-24 4.4E-29 247.7 19.6 342 172-854 23-368 (464)
61 PRK00750 lysK lysyl-tRNA synth 99.9 9.3E-23 2E-27 244.4 16.8 126 171-306 22-156 (510)
62 PF01406 tRNA-synt_1e: tRNA sy 99.9 1E-23 2.2E-28 231.6 7.4 123 173-317 10-133 (300)
63 PF08264 Anticodon_1: Anticodo 99.9 3.8E-22 8.3E-27 203.2 15.4 150 820-977 1-151 (153)
64 PF13603 tRNA-synt_1_2: Leucyl 99.9 1.5E-22 3.3E-27 210.1 10.6 127 353-482 10-185 (185)
65 TIGR00456 argS arginyl-tRNA sy 99.9 4.4E-20 9.6E-25 225.3 32.7 221 659-900 335-559 (566)
66 KOG2007 Cysteinyl-tRNA synthet 99.9 1.6E-19 3.5E-24 204.0 28.2 169 653-867 259-428 (586)
67 COG0018 ArgS Arginyl-tRNA synt 99.8 8.4E-16 1.8E-20 185.1 35.1 216 657-901 340-571 (577)
68 TIGR00467 lysS_arch lysyl-tRNA 99.7 2.9E-17 6.3E-22 195.8 19.6 97 172-277 18-122 (515)
69 PRK12451 arginyl-tRNA syntheta 99.7 1.3E-14 2.8E-19 177.0 34.2 210 657-900 330-555 (562)
70 cd07962 Anticodon_Ia_Val Antic 99.7 1.4E-15 3E-20 152.1 15.8 135 775-914 1-135 (135)
71 PLN02286 arginine-tRNA ligase 99.7 2.1E-13 4.5E-18 166.6 36.9 190 684-900 363-569 (576)
72 cd00671 ArgRS_core catalytic c 99.6 1.8E-15 4E-20 162.8 13.6 122 174-318 2-124 (212)
73 cd07959 Anticodon_Ia_Leu_AEc A 99.6 1.1E-14 2.4E-19 141.4 14.5 116 775-914 1-117 (117)
74 cd07958 Anticodon_Ia_Leu_BEm A 99.6 4.4E-14 9.6E-19 136.8 13.4 117 775-914 1-117 (117)
75 cd07957 Anticodon_Ia_Met Antic 99.5 1.6E-13 3.4E-18 135.4 13.7 124 780-914 6-129 (129)
76 PF10458 Val_tRNA-synt_C: Valy 99.3 3.8E-12 8.2E-17 111.0 7.8 66 1036-1101 1-66 (66)
77 PF00750 tRNA-synt_1d: tRNA sy 99.3 2.2E-11 4.7E-16 141.0 16.5 138 169-309 17-194 (354)
78 cd07375 Anticodon_Ia_like Anti 99.2 1.1E-10 2.4E-15 112.4 13.3 116 778-903 2-117 (117)
79 cd00802 class_I_aaRS_core cata 99.1 2.5E-10 5.5E-15 115.4 8.1 77 176-269 1-77 (143)
80 PF01921 tRNA-synt_1f: tRNA sy 98.7 1.2E-08 2.5E-13 116.1 5.3 101 170-278 21-129 (360)
81 PRK04156 gltX glutamyl-tRNA sy 98.7 2E-06 4.4E-11 103.9 22.9 98 175-309 102-199 (567)
82 COG1384 LysS Lysyl-tRNA synthe 98.5 9.9E-07 2.1E-11 103.1 12.7 99 172-277 19-125 (521)
83 PRK01406 gltX glutamyl-tRNA sy 98.3 1.7E-05 3.7E-10 95.3 16.6 95 176-309 6-108 (476)
84 cd09287 GluRS_non_core catalyt 98.0 1.3E-05 2.9E-10 87.3 7.9 92 179-307 6-97 (240)
85 TIGR03838 queuosine_YadB gluta 97.6 0.00019 4.1E-09 80.1 8.4 91 180-309 6-97 (272)
86 PLN03233 putative glutamate-tR 97.6 0.00022 4.8E-09 85.6 9.3 96 175-309 12-107 (523)
87 PTZ00437 glutaminyl-tRNA synth 97.5 0.00026 5.6E-09 85.3 9.4 96 175-309 52-147 (574)
88 TIGR00463 gltX_arch glutamyl-t 97.5 0.00042 9.1E-09 84.1 10.2 96 175-309 94-189 (560)
89 PF00749 tRNA-synt_1c: tRNA sy 97.4 0.00034 7.4E-09 80.1 8.2 92 180-309 7-98 (314)
90 PLN02907 glutamate-tRNA ligase 97.4 0.00049 1.1E-08 86.5 10.1 94 175-307 214-307 (722)
91 PTZ00402 glutamyl-tRNA synthet 97.4 0.00039 8.4E-09 84.5 8.5 93 175-306 53-146 (601)
92 TIGR00440 glnS glutaminyl-tRNA 97.4 0.00045 9.7E-09 83.1 8.8 94 178-309 4-97 (522)
93 cd00807 GlnRS_core catalytic c 97.4 0.00057 1.2E-08 74.5 8.7 92 177-307 4-95 (238)
94 PRK05347 glutaminyl-tRNA synth 97.3 0.00059 1.3E-08 82.3 8.6 97 175-309 30-126 (554)
95 PRK14895 gltX glutamyl-tRNA sy 97.3 0.00068 1.5E-08 81.4 9.0 95 176-309 6-101 (513)
96 PLN02859 glutamine-tRNA ligase 97.3 0.00073 1.6E-08 84.1 9.5 96 175-309 265-360 (788)
97 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.0007 1.5E-08 76.5 8.3 95 176-309 7-102 (299)
98 PRK12410 glutamylglutaminyl-tR 97.3 0.00073 1.6E-08 79.9 8.6 91 180-309 5-95 (433)
99 PRK12558 glutamyl-tRNA synthet 97.3 0.0009 1.9E-08 79.5 9.4 94 177-309 5-98 (445)
100 KOG4426 Arginyl-tRNA synthetas 97.2 0.18 3.8E-06 58.2 26.5 163 685-864 433-611 (656)
101 COG0008 GlnS Glutamyl- and glu 97.2 0.00089 1.9E-08 80.0 9.1 96 175-309 10-106 (472)
102 TIGR00464 gltX_bact glutamyl-t 97.2 0.001 2.2E-08 80.1 8.8 93 178-309 5-98 (470)
103 PRK14703 glutaminyl-tRNA synth 97.1 0.00082 1.8E-08 84.5 7.9 96 175-309 32-128 (771)
104 cd00418 GlxRS_core catalytic c 97.0 0.002 4.3E-08 70.2 8.1 86 179-303 6-92 (230)
105 cd00808 GluRS_core catalytic c 96.9 0.0023 5.1E-08 70.1 8.2 87 178-303 5-100 (239)
106 PLN02627 glutamyl-tRNA synthet 96.9 0.0023 5.1E-08 77.1 8.7 96 175-309 46-150 (535)
107 cd07956 Anticodon_Ia_Arg Antic 95.8 0.22 4.8E-06 51.1 14.6 139 753-900 2-149 (156)
108 KOG1147 Glutamyl-tRNA syntheta 95.2 0.051 1.1E-06 64.1 7.9 98 175-311 201-298 (712)
109 cd00395 Tyr_Trp_RS_core cataly 95.1 0.04 8.7E-07 62.0 6.5 61 651-715 152-214 (273)
110 PRK13354 tyrosyl-tRNA syntheta 95.0 0.019 4.2E-07 68.0 4.1 59 651-713 185-244 (410)
111 cd00805 TyrRS_core catalytic c 95.0 0.031 6.7E-07 62.8 5.3 58 653-715 152-210 (269)
112 PRK05912 tyrosyl-tRNA syntheta 94.3 0.035 7.5E-07 66.0 3.8 59 651-713 187-246 (408)
113 PF00579 tRNA-synt_1b: tRNA sy 93.4 0.08 1.7E-06 60.2 4.5 63 651-713 148-213 (292)
114 KOG1195 Arginyl-tRNA synthetas 92.9 1.4 3E-05 52.4 13.5 154 149-306 87-276 (567)
115 PRK12556 tryptophanyl-tRNA syn 92.9 0.092 2E-06 60.7 4.0 60 651-711 148-214 (332)
116 cd00802 class_I_aaRS_core cata 92.7 0.11 2.4E-06 52.5 3.9 50 653-704 94-143 (143)
117 cd00418 GlxRS_core catalytic c 92.2 0.51 1.1E-05 51.7 8.3 22 685-706 139-160 (230)
118 COG0495 LeuS Leucyl-tRNA synth 91.5 0.15 3.2E-06 64.8 3.7 79 475-558 138-231 (814)
119 PRK12284 tryptophanyl-tRNA syn 91.5 0.14 3E-06 60.6 3.2 61 651-712 147-215 (431)
120 PLN02563 aminoacyl-tRNA ligase 91.3 0.23 4.9E-06 65.0 5.2 81 472-558 212-306 (963)
121 KOG1148 Glutaminyl-tRNA synthe 91.2 0.51 1.1E-05 56.7 7.4 95 175-308 249-343 (764)
122 PRK08560 tyrosyl-tRNA syntheta 90.8 0.24 5.3E-06 57.3 4.5 59 651-713 167-229 (329)
123 TIGR00233 trpS tryptophanyl-tR 89.9 0.22 4.7E-06 57.6 3.0 60 651-712 138-206 (328)
124 cd00808 GluRS_core catalytic c 89.8 0.56 1.2E-05 51.7 5.9 51 653-706 119-169 (239)
125 TIGR00396 leuS_bact leucyl-tRN 89.8 0.32 7E-06 63.2 4.7 83 472-559 130-227 (842)
126 COG0162 TyrS Tyrosyl-tRNA synt 89.7 0.33 7E-06 57.3 4.2 54 653-710 181-235 (401)
127 PRK12285 tryptophanyl-tRNA syn 89.4 0.22 4.8E-06 58.4 2.6 59 652-712 203-265 (368)
128 PRK12282 tryptophanyl-tRNA syn 89.1 0.31 6.8E-06 56.4 3.5 63 650-712 140-209 (333)
129 COG0180 TrpS Tryptophanyl-tRNA 89.1 0.35 7.5E-06 55.1 3.7 62 651-712 144-212 (314)
130 PRK14900 valS valyl-tRNA synth 88.0 0.48 1E-05 63.0 4.6 60 1035-1095 845-905 (1052)
131 PTZ00126 tyrosyl-tRNA syntheta 87.5 0.46 1E-05 56.0 3.6 59 651-712 209-271 (383)
132 TIGR00234 tyrS tyrosyl-tRNA sy 87.5 0.52 1.1E-05 55.6 4.0 57 652-712 177-234 (377)
133 PF15188 CCDC-167: Coiled-coil 87.5 2.9 6.2E-05 38.5 7.8 64 1037-1104 3-66 (85)
134 cd00806 TrpRS_core catalytic c 87.2 0.55 1.2E-05 53.2 3.8 61 652-712 137-205 (280)
135 PRK12283 tryptophanyl-tRNA syn 86.0 0.64 1.4E-05 54.6 3.6 25 688-712 253-277 (398)
136 PRK00390 leuS leucyl-tRNA synt 84.3 1.3 2.7E-05 57.6 5.5 101 471-576 132-247 (805)
137 PRK00927 tryptophanyl-tRNA syn 84.2 0.67 1.5E-05 53.8 2.7 61 651-712 137-209 (333)
138 KOG0435 Leucyl-tRNA synthetase 83.3 0.43 9.2E-06 58.2 0.6 53 496-554 197-249 (876)
139 TIGR00464 gltX_bact glutamyl-t 83.0 3 6.4E-05 50.8 7.6 111 654-782 199-310 (470)
140 PRK12285 tryptophanyl-tRNA syn 80.9 9 0.0002 45.1 10.3 62 155-221 40-109 (368)
141 cd00395 Tyr_Trp_RS_core cataly 79.9 2.5 5.5E-05 47.7 5.2 34 183-220 8-42 (273)
142 PLN02486 aminoacyl-tRNA ligase 77.7 9.3 0.0002 45.2 9.1 58 157-219 49-115 (383)
143 cd00806 TrpRS_core catalytic c 76.1 6.1 0.00013 44.8 6.9 36 182-220 7-42 (280)
144 cd00807 GlnRS_core catalytic c 74.8 9.1 0.0002 42.2 7.5 30 753-782 197-226 (238)
145 cd00671 ArgRS_core catalytic c 74.4 3.7 7.9E-05 44.5 4.4 50 655-705 162-212 (212)
146 PF02388 FemAB: FemAB family; 72.6 10 0.00022 45.4 7.8 61 1031-1102 233-294 (406)
147 PLN02486 aminoacyl-tRNA ligase 72.0 3.9 8.4E-05 48.3 4.1 54 655-712 222-279 (383)
148 cd00805 TyrRS_core catalytic c 70.6 3.7 7.9E-05 46.3 3.4 36 182-221 8-44 (269)
149 PTZ00348 tyrosyl-tRNA syntheta 69.7 3.8 8.2E-05 51.7 3.5 58 651-712 174-236 (682)
150 KOG1149 Glutamyl-tRNA syntheta 68.5 19 0.00041 42.5 8.4 94 180-309 39-138 (524)
151 PF05746 DALR_1: DALR anticodo 66.9 30 0.00065 33.3 8.6 81 817-900 32-112 (119)
152 KOG1195 Arginyl-tRNA synthetas 66.8 1.4E+02 0.0031 36.2 15.2 192 681-899 355-559 (567)
153 PRK12410 glutamylglutaminyl-tR 64.4 17 0.00037 43.7 7.4 22 685-706 221-242 (433)
154 PF03962 Mnd1: Mnd1 family; I 64.4 36 0.00079 36.3 9.1 74 1028-1102 54-131 (188)
155 PRK05912 tyrosyl-tRNA syntheta 62.4 13 0.00029 44.4 6.1 42 172-218 32-74 (408)
156 PRK14895 gltX glutamyl-tRNA sy 60.6 18 0.0004 44.3 6.8 51 654-707 198-248 (513)
157 PRK08560 tyrosyl-tRNA syntheta 59.0 10 0.00022 44.0 4.3 44 172-220 29-72 (329)
158 PF01927 Mut7-C: Mut7-C RNAse 58.5 8.6 0.00019 39.2 3.1 23 201-223 12-34 (147)
159 TIGR00234 tyrS tyrosyl-tRNA sy 58.5 8.4 0.00018 45.6 3.4 40 173-217 30-70 (377)
160 COG0162 TyrS Tyrosyl-tRNA synt 57.1 16 0.00034 43.5 5.3 31 183-217 41-72 (401)
161 PF05008 V-SNARE: Vesicle tran 57.0 87 0.0019 28.1 9.1 56 1037-1098 23-78 (79)
162 PLN03233 putative glutamate-tR 56.7 33 0.00071 42.2 8.0 76 687-789 234-316 (523)
163 PF07106 TBPIP: Tat binding pr 55.9 82 0.0018 32.8 10.0 62 1036-1102 76-137 (169)
164 PF14282 FlxA: FlxA-like prote 53.9 63 0.0014 31.1 8.0 56 1036-1101 16-71 (106)
165 PRK13354 tyrosyl-tRNA syntheta 53.1 32 0.00069 41.3 7.1 46 171-221 31-77 (410)
166 PLN02886 aminoacyl-tRNA ligase 52.5 12 0.00026 44.2 3.4 30 183-216 55-84 (389)
167 cd09287 GluRS_non_core catalyt 51.6 43 0.00094 37.1 7.3 30 753-782 199-228 (240)
168 PRK10636 putative ABC transpor 51.4 51 0.0011 41.9 9.0 63 1038-1100 562-631 (638)
169 PRK11020 hypothetical protein; 51.0 62 0.0013 31.3 7.1 50 1036-1101 2-51 (118)
170 PRK12284 tryptophanyl-tRNA syn 49.8 32 0.00069 41.2 6.3 97 183-308 11-108 (431)
171 PF00579 tRNA-synt_1b: tRNA sy 49.6 13 0.00029 42.2 3.1 44 172-220 4-47 (292)
172 PF14257 DUF4349: Domain of un 48.9 70 0.0015 35.7 8.7 63 1035-1102 128-190 (262)
173 PRK00247 putative inner membra 48.5 16 0.00034 43.8 3.5 7 38-44 276-282 (429)
174 PRK12558 glutamyl-tRNA synthet 47.9 50 0.0011 40.0 7.6 22 685-706 226-247 (445)
175 TIGR00463 gltX_arch glutamyl-t 46.2 49 0.0011 41.1 7.4 71 684-782 314-391 (560)
176 KOG2916 Translation initiation 45.0 73 0.0016 35.4 7.5 48 1035-1086 234-281 (304)
177 TIGR00440 glnS glutaminyl-tRNA 44.2 45 0.00098 41.1 6.6 72 681-782 226-303 (522)
178 TIGR00233 trpS tryptophanyl-tR 44.2 14 0.0003 42.9 2.2 42 174-220 3-44 (328)
179 KOG4364 Chromatin assembly fac 43.8 18 0.00039 44.5 3.0 33 8-40 194-226 (811)
180 COG4372 Uncharacterized protei 43.6 61 0.0013 37.7 6.9 66 1037-1102 215-280 (499)
181 PRK00927 tryptophanyl-tRNA syn 43.2 15 0.00033 42.7 2.3 32 182-217 9-40 (333)
182 PF11336 DUF3138: Protein of u 42.3 83 0.0018 37.3 7.8 61 1038-1098 24-107 (514)
183 KOG2145 Cytoplasmic tryptophan 42.2 26 0.00055 39.3 3.6 27 169-195 81-107 (397)
184 PLN02886 aminoacyl-tRNA ligase 40.9 38 0.00083 40.2 5.1 45 261-306 103-148 (389)
185 PF14389 Lzipper-MIP1: Leucine 40.4 2.3E+02 0.0051 26.3 9.2 66 1035-1101 11-81 (88)
186 cd00089 HR1 Protein kinase C-r 40.1 1.4E+02 0.0031 26.4 7.5 64 1038-1103 8-71 (72)
187 PTZ00402 glutamyl-tRNA synthet 39.8 75 0.0016 39.8 7.5 37 753-789 321-358 (601)
188 KOG2185 Predicted RNA-processi 38.9 64 0.0014 37.8 6.2 57 1035-1102 416-472 (486)
189 KOG2412 Nuclear-export-signal 38.6 50 0.0011 40.1 5.5 34 55-88 227-260 (591)
190 cd06545 GH18_3CO4_chitinase Th 38.4 1.2E+02 0.0025 33.7 8.4 102 181-305 33-134 (253)
191 PLN02859 glutamine-tRNA ligase 38.1 75 0.0016 41.0 7.3 63 692-781 492-561 (788)
192 COG2348 Peptidoglycan interpep 38.0 68 0.0015 38.4 6.6 62 1029-1098 235-297 (418)
193 PRK05347 glutaminyl-tRNA synth 37.8 99 0.0022 38.4 8.1 71 681-782 255-332 (554)
194 PRK12556 tryptophanyl-tRNA syn 36.4 29 0.00063 40.4 3.2 36 183-220 12-47 (332)
195 smart00836 DALR_1 DALR anticod 35.6 2.7E+02 0.0059 26.8 9.5 82 817-901 35-116 (122)
196 COG3883 Uncharacterized protei 35.5 1.1E+02 0.0024 34.3 7.3 24 1076-1099 75-98 (265)
197 PF06696 Strep_SA_rep: Strepto 35.1 68 0.0015 22.9 3.5 22 1079-1100 3-24 (25)
198 KOG2144 Tyrosyl-tRNA synthetas 35.1 38 0.00082 38.1 3.6 52 650-705 175-228 (360)
199 COG3879 Uncharacterized protei 34.5 1.2E+02 0.0025 33.7 7.1 54 1035-1098 53-106 (247)
200 PRK13182 racA polar chromosome 33.8 1.5E+02 0.0034 31.2 7.8 57 1037-1102 90-146 (175)
201 PRK05710 glutamyl-Q tRNA(Asp) 33.3 43 0.00093 38.4 3.9 26 680-707 219-244 (299)
202 COG0008 GlnS Glutamyl- and glu 32.8 67 0.0015 39.2 5.6 26 685-711 236-261 (472)
203 PF07544 Med9: RNA polymerase 32.4 1.5E+02 0.0033 27.2 6.6 57 1035-1102 24-80 (83)
204 PLN02627 glutamyl-tRNA synthet 32.4 1E+02 0.0022 38.2 6.9 25 680-706 276-300 (535)
205 KOG3990 Uncharacterized conser 32.4 1.7E+02 0.0036 32.3 7.7 63 1036-1102 229-295 (305)
206 PF12761 End3: Actin cytoskele 32.2 1.6E+02 0.0035 31.5 7.6 29 1036-1064 93-121 (195)
207 PTZ00126 tyrosyl-tRNA syntheta 31.9 42 0.00091 39.9 3.6 42 172-217 65-106 (383)
208 PTZ00437 glutaminyl-tRNA synth 31.6 56 0.0012 40.5 4.6 72 693-791 280-358 (574)
209 COG1730 GIM5 Predicted prefold 31.3 5.9E+02 0.013 26.1 15.9 29 1035-1063 90-118 (145)
210 PF08287 DASH_Spc19: Spc19; I 31.0 2E+02 0.0044 29.7 7.9 64 1037-1100 73-153 (153)
211 KOG4364 Chromatin assembly fac 31.0 33 0.00072 42.3 2.5 9 689-697 562-570 (811)
212 KOG2623 Tyrosyl-tRNA synthetas 30.7 40 0.00086 39.5 3.0 59 651-714 226-288 (467)
213 PF10153 DUF2361: Uncharacteri 30.0 1.5E+02 0.0032 29.1 6.4 42 1051-1096 2-43 (114)
214 PRK00247 putative inner membra 30.0 37 0.0008 40.7 2.7 20 66-85 337-356 (429)
215 PRK11147 ABC transporter ATPas 30.0 1.7E+02 0.0036 37.3 8.7 59 1041-1100 570-628 (635)
216 cd03016 PRX_1cys Peroxiredoxin 29.4 55 0.0012 35.1 3.8 56 447-509 119-175 (203)
217 PRK12283 tryptophanyl-tRNA syn 29.2 35 0.00076 40.5 2.3 29 183-216 11-40 (398)
218 COG2433 Uncharacterized conser 28.9 1.1E+02 0.0024 37.9 6.4 66 1037-1102 441-509 (652)
219 PF04102 SlyX: SlyX; InterPro 28.8 2.6E+02 0.0056 24.8 7.2 51 1037-1101 2-52 (69)
220 PF03938 OmpH: Outer membrane 28.6 2.8E+02 0.006 28.2 8.6 60 1036-1097 40-99 (158)
221 PRK13729 conjugal transfer pil 28.4 1.5E+02 0.0033 35.9 7.4 25 1077-1101 100-124 (475)
222 PRK11637 AmiB activator; Provi 28.0 98 0.0021 37.3 5.9 18 1081-1098 96-113 (428)
223 COG0180 TrpS Tryptophanyl-tRNA 27.9 44 0.00096 38.4 2.8 46 173-224 5-51 (314)
224 PF10653 Phage-A118_gp45: Prot 27.3 46 0.00099 27.5 1.9 35 1055-1091 19-53 (62)
225 COG3883 Uncharacterized protei 27.1 1.7E+02 0.0038 32.8 7.0 59 1037-1102 36-94 (265)
226 PF13851 GAS: Growth-arrest sp 26.8 2.4E+02 0.0051 30.5 7.9 55 1035-1100 51-105 (201)
227 TIGR03838 queuosine_YadB gluta 26.8 59 0.0013 36.8 3.5 26 680-707 212-237 (272)
228 PF02185 HR1: Hr1 repeat; Int 26.6 2E+02 0.0044 25.3 6.2 59 1041-1102 3-61 (70)
229 PF11559 ADIP: Afadin- and alp 26.3 1.5E+02 0.0033 30.1 6.2 23 1076-1098 103-125 (151)
230 PRK05431 seryl-tRNA synthetase 25.7 1.4E+02 0.0031 36.0 6.7 30 1035-1064 31-60 (425)
231 TIGR00414 serS seryl-tRNA synt 25.5 1.8E+02 0.0038 35.1 7.4 30 1035-1064 33-62 (418)
232 PRK11637 AmiB activator; Provi 25.0 1.2E+02 0.0026 36.6 5.9 15 1082-1096 104-118 (428)
233 PF03961 DUF342: Protein of un 25.0 1.8E+02 0.0039 35.3 7.5 37 1027-1063 321-358 (451)
234 PF07061 Swi5: Swi5; InterPro 25.0 4.7E+02 0.01 24.2 8.3 50 1037-1092 5-54 (83)
235 PRK00736 hypothetical protein; 24.9 4.9E+02 0.011 23.0 8.4 52 1036-1101 2-53 (68)
236 PRK02793 phi X174 lysis protei 24.8 5E+02 0.011 23.3 8.3 52 1037-1102 6-57 (72)
237 PRK10884 SH3 domain-containing 24.6 1.4E+02 0.0031 32.3 5.7 23 1039-1061 93-115 (206)
238 PF05524 PEP-utilisers_N: PEP- 24.5 1.5E+02 0.0033 28.9 5.6 29 1035-1063 31-59 (123)
239 KOG3564 GTPase-activating prot 24.3 1.7E+02 0.0036 35.3 6.5 68 1035-1102 38-105 (604)
240 KOG2129 Uncharacterized conser 24.3 3.1E+02 0.0068 32.4 8.5 60 1039-1098 201-270 (552)
241 PRK03947 prefoldin subunit alp 24.1 7.3E+02 0.016 24.8 14.2 29 1035-1063 90-118 (140)
242 PF10500 SR-25: Nuclear RNA-sp 24.0 1.9E+02 0.004 31.6 6.3 9 195-203 191-199 (225)
243 PF08657 DASH_Spc34: DASH comp 24.0 1.5E+02 0.0032 33.4 5.9 59 1035-1093 190-258 (259)
244 PF02403 Seryl_tRNA_N: Seryl-t 23.7 1.7E+02 0.0036 27.9 5.6 65 1035-1100 32-100 (108)
245 PF12569 NARP1: NMDA receptor- 23.4 2.6E+02 0.0057 34.6 8.5 21 14-34 370-390 (517)
246 cd00890 Prefoldin Prefoldin is 23.2 6.9E+02 0.015 24.2 15.0 38 1026-1063 68-111 (129)
247 PTZ00137 2-Cys peroxiredoxin; 23.1 82 0.0018 35.4 3.7 24 301-324 97-120 (261)
248 PF03962 Mnd1: Mnd1 family; I 23.1 2.8E+02 0.006 29.6 7.5 60 1039-1101 103-162 (188)
249 PLN02678 seryl-tRNA synthetase 22.9 1.7E+02 0.0036 35.7 6.5 29 1035-1063 36-64 (448)
250 PF04918 DltD_M: DltD central 22.7 39 0.00085 35.1 1.0 18 503-520 23-40 (163)
251 PF03961 DUF342: Protein of un 21.9 2.5E+02 0.0054 34.1 7.9 65 1035-1100 337-401 (451)
252 PF01920 Prefoldin_2: Prefoldi 21.9 3.1E+02 0.0068 25.6 7.0 25 1036-1060 59-83 (106)
253 PF10805 DUF2730: Protein of u 21.7 5.1E+02 0.011 24.9 8.4 57 1038-1100 34-91 (106)
254 PF00749 tRNA-synt_1c: tRNA sy 21.7 85 0.0018 36.2 3.6 24 685-708 229-252 (314)
255 PLN02320 seryl-tRNA synthetase 21.6 2.1E+02 0.0045 35.3 6.9 30 1035-1064 96-125 (502)
256 PRK04406 hypothetical protein; 21.5 6.1E+02 0.013 22.9 8.2 51 1037-1101 9-59 (75)
257 TIGR02420 dksA RNA polymerase- 21.3 6.1E+02 0.013 24.4 8.9 65 1038-1102 7-77 (110)
258 PF08317 Spc7: Spc7 kinetochor 21.2 3.4E+02 0.0074 31.4 8.5 22 1042-1063 180-201 (325)
259 KOG2505 Ankyrin repeat protein 21.2 1.7E+02 0.0037 35.5 5.8 75 11-85 427-529 (591)
260 PLN02907 glutamate-tRNA ligase 21.1 2.4E+02 0.0053 36.4 7.8 37 753-789 481-518 (722)
261 cd00598 GH18_chitinase-like Th 21.1 4.1E+02 0.0088 28.0 8.5 43 263-305 95-143 (210)
262 COG1579 Zn-ribbon protein, pos 20.9 3.2E+02 0.0069 30.4 7.6 30 1035-1064 55-84 (239)
263 PF07989 Microtub_assoc: Micro 20.7 4E+02 0.0087 24.1 6.9 66 1036-1102 4-71 (75)
264 PF04977 DivIC: Septum formati 20.5 1.9E+02 0.0042 25.5 5.0 29 1035-1063 20-48 (80)
265 KOG2264 Exostosin EXT1L [Signa 20.4 2.1E+02 0.0046 35.0 6.4 60 1036-1102 90-149 (907)
266 PRK12282 tryptophanyl-tRNA syn 20.1 51 0.0011 38.4 1.3 15 183-197 11-25 (333)
267 KOG0614 cGMP-dependent protein 20.0 80 0.0017 38.5 2.9 27 286-312 523-549 (732)
No 1
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-256 Score=2202.11 Aligned_cols=967 Identities=58% Similarity=0.995 Sum_probs=926.9
Q ss_pred CCccccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHhHH
Q 001303 119 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 197 (1104)
Q Consensus 119 ~~~~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i 197 (1104)
++...+.+.|+.|+|+++..++++.|+|..||.+||.||+++|+|+++.. ...+.|+|+.||||+||.||||||++.++
T Consensus 21 ~~~~~~~~~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai 100 (995)
T KOG0432|consen 21 EEVASYVPSTAPGEKKDLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI 100 (995)
T ss_pred CCcccccCCCCcchhhccCCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH
Confidence 45678899999999999999999999999999999999999999999875 34679999999999999999999999999
Q ss_pred HHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001303 198 QDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 277 (1104)
Q Consensus 198 ~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW 277 (1104)
+|+++||+||.||+|+|+||+||+||+||++|||+|+++.|++||++||++|+++||+|+++++.+|.+||++||+|+||
T Consensus 101 qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW 180 (995)
T KOG0432|consen 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDW 180 (995)
T ss_pred HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEee
Q 001303 278 SRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAY 357 (1104)
Q Consensus 278 ~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~ 357 (1104)
+|++|||||..+++|.++|++||++|+|||+.++|||||.++|+|||+||+++++.+++++.||||+.+|+||+|++|+|
T Consensus 181 ~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY 260 (995)
T KOG0432|consen 181 DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAY 260 (995)
T ss_pred cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchH
Q 001303 358 PLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDF 437 (1104)
Q Consensus 358 ~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~ 437 (1104)
++.|+++.|+|+|||||||+||+||||||+|+||+|++|++++|||+++.+|||+|.+ |||+|||||||||||||++||
T Consensus 261 ~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~-Vd~~fGTGaVKITPaHd~nDy 339 (995)
T KOG0432|consen 261 PVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIA-VDMEFGTGAVKITPAHDPNDY 339 (995)
T ss_pred eccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeeccc-ccccccccceEecCCCChhHH
Confidence 9999999999999999999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeecccccccc
Q 001303 438 DVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYV 517 (1104)
Q Consensus 438 ~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl 517 (1104)
++|+||||++++||++||.|++.|| +|.||+||+||++|++.|++.|++++.++|+|.+|+|+||||+|||+++|||||
T Consensus 340 EvgkRh~L~~~ni~~~dG~l~~~~g-ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v 418 (995)
T KOG0432|consen 340 EVGKRHNLEFINIFTDDGLLNNVCG-EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFV 418 (995)
T ss_pred HHHHhcCCCceeEEcCCCceeccch-hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchhee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEec
Q 001303 518 NCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVAR 597 (1104)
Q Consensus 518 ~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1104)
+|++|+++|++++ ++|+++|.|+.++++|.+|++|++|||||||+||||+||+|++...++ ..+.++|++|+
T Consensus 419 ~c~ema~~A~~av---~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~-----~~ee~~Wvvar 490 (995)
T KOG0432|consen 419 SCKEMAKKALKAV---ESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG-----RAEEDYWVVAR 490 (995)
T ss_pred ehHHHHHHHHHHH---hcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC-----CCccceeEEeC
Confidence 9999999999999 999999999999999999999999999999999999999999976532 23457999999
Q ss_pred CHHHHHHHHhhhc-CCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHh
Q 001303 598 DEKEALAVANKKF-SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIK 676 (1104)
Q Consensus 598 ~~~e~~~~~~~~~-~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~ 676 (1104)
++++|++++..++ |+..++++||+||||||||||+||||++|||++++||..|||.++++||+||+||||+||+|+|+.
T Consensus 491 seeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~k 570 (995)
T KOG0432|consen 491 SEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLK 570 (995)
T ss_pred CHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhh
Confidence 9999999999999 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001303 677 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 756 (1104)
Q Consensus 677 l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGa 756 (1104)
|+|++||++|++||||||.+|||||||+||||||+|||+|++|++|+.+|++|||||+|+++|++||+++||||||+||+
T Consensus 571 LtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGt 650 (995)
T KOG0432|consen 571 LTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGT 650 (995)
T ss_pred hcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHH
Q 001303 757 DALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLP-FSCKWILSVLNKAISRTA 835 (1104)
Q Consensus 757 DalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~-~~D~wils~L~~~v~~v~ 835 (1104)
|||||+||+++.+++|||+|++++.+||+|||||||+.||+++.++++|.|.........+ ..|+||+++|+.+++.++
T Consensus 651 DALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 651 DALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVN 730 (995)
T ss_pred HHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888887654444333 399999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCC
Q 001303 836 SSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLP 915 (1104)
Q Consensus 836 ~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~ 915 (1104)
++|++|+|+.|++++|+||++++||+|+|.+||.+++++.. .+..+..||+.||+.+|+||||||||+||||||+||
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~---~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEA---LAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHH---HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 99999999999999999999999999999999999887644 677889999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCC--CcccEEEEecChhHHHHHHHHHH
Q 001303 916 QPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHEL 993 (1104)
Q Consensus 916 ~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~--~~~~~~I~~~~~~~~~~l~~~~~ 993 (1104)
.+.+ ....||+.++||...+.|.|+++|..|+.+++++..+|++|+.| +++ .+..+++...++....+++.+.+
T Consensus 808 ~r~~-~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y---~l~~~~~~~v~~~~s~~~~~~~~~~~~~ 883 (995)
T KOG0432|consen 808 RRKG-SKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEY---NLSPKPRGSVFIASSDEEDKSILKEFLD 883 (995)
T ss_pred cCCC-CCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEecCCCcchhHHHHHHH
Confidence 8765 35569999999988889999999999999999999999999999 884 35566776666555678999999
Q ss_pred HHHhhhccceEEEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC
Q 001303 994 EIVTLSTSSSLKVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV 1071 (1104)
Q Consensus 994 ~I~~L~~v~~v~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~ka 1071 (1104)
.|.++.+++.+.++.+ .+..|.||+..++++.+.|||+++ +|++.|+.+|+||+.|+|+++++++.++++++|..||
T Consensus 884 ~i~~l~~~~~v~i~~~-~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~ 962 (995)
T KOG0432|consen 884 EISTLTNLELVSISSP-AEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKA 962 (995)
T ss_pred HHHHhhccceeEeccC-CccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 9999999999999988 555679999999999999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001303 1072 PSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1103 (1104)
Q Consensus 1072 P~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~~ 1103 (1104)
|.++++.+++|++++++|++.++++++.++.+
T Consensus 963 p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~~~ 994 (995)
T KOG0432|consen 963 PLEVKEKNKEKLKELEAEIENLKAALANLKSL 994 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999998764
No 2
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=6.6e-231 Score=2168.86 Aligned_cols=1055 Identities=80% Similarity=1.320 Sum_probs=968.4
Q ss_pred CCCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CcccccccccccCCCCCCcccc
Q 001303 48 SSIMTEPEKKIETAEDLERKKKKEEKAKEKELKKLKALEKAEQAKLKKQEQGGNS---LKKSVKKNVKRDDGEDNAEEFV 124 (1104)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 124 (1104)
++.+.++++++.+++++||++||++|+++|++|++|+.+|+..+++|+|+ ++++ +++++|+..+++++.+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1066)
T PLN02381 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ-ASDGTNVPKKSEKKSRKRDVEDENPEDFI 80 (1066)
T ss_pred CCcccchhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCcccchhhhhhhhhhhccccccC
Confidence 45677889999999999999999999999999999999998667777774 4455 7777788888888877877888
Q ss_pred CCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHH
Q 001303 125 DPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRW 204 (1104)
Q Consensus 125 ~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry 204 (1104)
.|+|++|+|++|+.+|++.|||+.||++||++|+++++|++..+.++++|+|++|||||||.||||||+|++++|+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry 160 (1066)
T PLN02381 81 DPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRW 160 (1066)
T ss_pred CCCCCcchhhccchhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999776678899999999999999999999999999999999
Q ss_pred HHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccC
Q 001303 205 RRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTM 284 (1104)
Q Consensus 205 ~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~ 284 (1104)
+||+||+|+|+|||||||||||.+||++++++.|++++++||++|+++||+|+.++++.|++||++||+|+||+|+|+||
T Consensus 161 ~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~ 240 (1066)
T PLN02381 161 KRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTM 240 (1066)
T ss_pred HHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcc
Q 001303 285 DEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG 364 (1104)
Q Consensus 285 d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~ 364 (1104)
||.|+++|+|+|++||++|||||+.++|||||.|+|+|||+||+|+++.+++++.||++...+++|++++|+|++.++++
T Consensus 241 d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~ 320 (1066)
T PLN02381 241 DEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLG 320 (1066)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986667
Q ss_pred eEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhC
Q 001303 365 EIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN 444 (1104)
Q Consensus 365 ~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~ 444 (1104)
+|+|||||||||+|++||||||+|+||++|+|++|.||++++.+|||+|+.|||++||||+||+|||||++||++|++||
T Consensus 321 ~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~ 400 (1066)
T PLN02381 321 EIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHN 400 (1066)
T ss_pred EEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986459999999999999999999999999999
Q ss_pred CccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHH
Q 001303 445 LEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAM 524 (1104)
Q Consensus 445 L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~ 524 (1104)
|+++++||++|+|++++|..|.||++++||++|++.|++.|++++.++|.|+||+|||||+||+|++++||||+|+++++
T Consensus 401 L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~ 480 (1066)
T PLN02381 401 LEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAK 480 (1066)
T ss_pred CCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHH
Confidence 99999999999999987658999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHH
Q 001303 525 EALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALA 604 (1104)
Q Consensus 525 ~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 604 (1104)
++++++..+.+++|+|+|++++++|.+||+|++|||||||||||||||+|||..+++.+...+.+++.|+++++..++..
T Consensus 481 ~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 560 (1066)
T PLN02381 481 QALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALL 560 (1066)
T ss_pred HHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcc
Confidence 99999833356899999999999999999999999999999999999999997544333334556678999988888776
Q ss_pred HHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCce
Q 001303 605 VANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFT 684 (1104)
Q Consensus 605 ~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk 684 (1104)
.++..|++....++|++||||||||||+||++++|||+++++|++|||+|++++|+||+||||+||+|+|+.++|++||+
T Consensus 561 ~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk 640 (1066)
T PLN02381 561 EASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFR 640 (1066)
T ss_pred hhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchH
Confidence 66656766555799999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred EEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHH
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALV 764 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~ 764 (1104)
+|++||||+|.+|+|||||+||||||.++|+|+++++|+.+|..||++++|+++|.++|+++||+|||+||||||||||+
T Consensus 641 ~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~ 720 (1066)
T PLN02381 641 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALV 720 (1066)
T ss_pred HheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHH
Q 001303 765 SYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFS 844 (1104)
Q Consensus 765 ~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~ 844 (1104)
+++..++|++|+++++.++|+|||||||++||+++++.+++.|........++.+|+||+++|+.++..++++|++|+|+
T Consensus 721 ~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~ 800 (1066)
T PLN02381 721 SYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFS 800 (1066)
T ss_pred cCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999998876545543222223457899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCC
Q 001303 845 DAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE 924 (1104)
Q Consensus 845 ~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~ 924 (1104)
.|+++||+|+|+++|||||+.+|+|+++++......+++++.+|+.||+.+++||||||||+|||||+.|+...+....+
T Consensus 801 ~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~~ 880 (1066)
T PLN02381 801 DAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKD 880 (1066)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCCC
Confidence 99999999999999999999999998765320011566789999999999999999999999999999997531111236
Q ss_pred CcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceE
Q 001303 925 SIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSL 1004 (1104)
Q Consensus 925 SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v 1004 (1104)
||++++||.+++.|.|++++..|+.++++|+.||++|+++.+-..+.++++++.+.+....+.++.+...|+.|+++++|
T Consensus 881 SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~v 960 (1066)
T PLN02381 881 SIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSSL 960 (1066)
T ss_pred eeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCee
Confidence 99999999999889999999999999999999999999971111256677777776666778899999999999999999
Q ss_pred EEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHH
Q 001303 1005 KVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAK 1082 (1104)
Q Consensus 1005 ~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~K 1082 (1104)
+++.......|.+|+..+++.++++|+++. ||+++|++||+|+++++++++++++++|+|++|++|||++||+++++|
T Consensus 961 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~k 1040 (1066)
T PLN02381 961 KVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARK 1040 (1066)
T ss_pred eeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHH
Confidence 986321233578898777778999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 001303 1083 LAKLLQEIDFFENESNRLGNS 1103 (1104)
Q Consensus 1083 l~~~~~el~~i~~~l~~l~~~ 1103 (1104)
|++++++++.+++.|+.|+++
T Consensus 1041 l~~~~~~l~~l~~~l~~l~~~ 1061 (1066)
T PLN02381 1041 LTKLLQELEFFEKESKRLEAE 1061 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998763
No 3
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-229 Score=2041.98 Aligned_cols=872 Identities=48% Similarity=0.865 Sum_probs=814.3
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
|++.|||+++|++||++|+++|+|+++.+.+.++|+|.+|||||||.||||||+++|++|+++||+||+||+|+|+||||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 46789999999999999999999999875442559999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||||||.+||+++..+ |++++|+|||+|++.||+|++++++.|++||++||+|+||+|++|||||+++++|+++|++|
T Consensus 81 hAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 81 HAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 99999999999999665 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccC
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 379 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~ 379 (1104)
|++|||||++++|||||.|+|||||+||+|++++ |.|+||+||+.+++++|+|||||||||+||
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~----------------g~L~~i~y~l~~~~~~i~VATTRPEtmlgd 223 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVE----------------GKLYYIKYPLADGDGYLVVATTRPETLLGD 223 (877)
T ss_pred HHCCceeecCCcccCCCccccchhhhhhccceee----------------eeEEEEEEecCCCCceEEEEecCccccccc
Confidence 9999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred ceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCcccc
Q 001303 380 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 459 (1104)
Q Consensus 380 ~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~ 459 (1104)
|||||||+|+||++|+|+.+++|++|+.||||+|++ ||++||||+||||||||+|||++|+||+||++++||++|+|++
T Consensus 224 tAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~-VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~ 302 (877)
T COG0525 224 TAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINE 302 (877)
T ss_pred eEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcc-cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeecc
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceE
Q 001303 460 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 539 (1104)
Q Consensus 460 ~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~ 539 (1104)
+++.+|+||+|++||++|++.|++.|+|++.+++.|+||+|+|||+||||++++||||++..+++.+++++ ++++++
T Consensus 303 ~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~---~~g~i~ 379 (877)
T COG0525 303 EAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAV---KDGKIK 379 (877)
T ss_pred CCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHH---hcCCce
Confidence 88559999999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred EeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCccccc
Q 001303 540 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQ 619 (1104)
Q Consensus 540 ~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~ 619 (1104)
|+|++++++|.+||++++|||||||||||||||+|||..| +.++++.++.+.... ...|+. ..++|
T Consensus 380 f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~-----------g~v~v~~~~~~~~~~-~~~~~~--~~~~q 445 (877)
T COG0525 380 FVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC-----------GNVVVAEEEPEDPAA-AEKCPK--EELEQ 445 (877)
T ss_pred EecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCC-----------CcEEeCCccccchhh-hccCch--hcccC
Confidence 9999999999999999999999999999999999999855 578888875544433 223333 56899
Q ss_pred CCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCcc
Q 001303 620 DPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRK 699 (1104)
Q Consensus 620 d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~K 699 (1104)
|+|||||||||++|||+++|||+++.+|+.|||+|+++||+||||||++||+|+|+.++|++||+.|++||+|+|++|+|
T Consensus 446 d~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~K 525 (877)
T COG0525 446 DEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRK 525 (877)
T ss_pred CcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHH
Q 001303 700 MSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR 779 (1104)
Q Consensus 700 MSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~ 779 (1104)
||||+||||||+|+|+ +||||||||||++.+.+|+|++|+.++
T Consensus 526 MSKS~GNvIDP~d~I~-------------------------------------~yGaDAlRf~la~~~~~G~Di~~~~~~ 568 (877)
T COG0525 526 MSKSKGNVIDPLDVID-------------------------------------KYGADALRFTLASLASPGRDINFDEKR 568 (877)
T ss_pred CcccCCCcCCHHHHHH-------------------------------------HhChHHHHHHHHhccCCCcccCcCHHH
Confidence 9999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHh
Q 001303 780 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 859 (1104)
Q Consensus 780 i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~ 859 (1104)
+.+++||||||||+.||+++++.+ ..+... .....+++|+||+++|++++..++++|++|+|..|+++||+|+|++||
T Consensus 569 ~~~~rnF~nKlWNa~Rfv~~~~~~-~~~~~~-~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fc 646 (877)
T COG0525 569 VEGYRNFLNKLWNATRFVLMNLDD-LGPDDL-DLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646 (877)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccc-cCcccc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998743 332211 112337999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCC
Q 001303 860 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWT 939 (1104)
Q Consensus 860 n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~ 939 (1104)
|||||++|++++++ +. .+.+++.||+++|+.+|+||||||||+||||||+|+.. .|||+++||.+.+.+.
T Consensus 647 D~YlEl~K~~l~~~-~~---~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~ 716 (877)
T COG0525 647 DWYLELAKPRLYGG-EE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELI 716 (877)
T ss_pred HHHHHHhhhhhcCc-HH---HHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC------CeEEeccCCCcchhhc
Confidence 99999999999877 43 67789999999999999999999999999999999862 7999999999999999
Q ss_pred cHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCc--ccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCCC
Q 001303 940 DERAEFEMDLVESTVRCIRSLRAEVLGKQKNER--LPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPTD 1017 (1104)
Q Consensus 940 d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~--~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~~ 1017 (1104)
|+.++..++.++++|.+||++|+++ |++.+ +++.+... .+..+.++.+...|..+++++++++... ....+..
T Consensus 717 d~~a~~~~~~l~~ii~~iR~~r~e~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~-~~~~~~~ 791 (877)
T COG0525 717 DEEAEKEFELLKEIISAIRNLRAEM---NLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILSP-DPEEPPV 791 (877)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEecc-HhHHHHHHHHHHHHHHhcCcceeeeccc-Cccccch
Confidence 9999999999999999999999999 98544 44555444 5567788999999999999999999875 3323445
Q ss_pred ceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1018 CAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1095 (1104)
Q Consensus 1018 ~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~ 1095 (1104)
++. .+.....+|+++. ||.+.|++||+|+++++++++++++++|+|++|+.|||++|++++++|+++++.+++++++
T Consensus 792 ~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~ 870 (877)
T COG0525 792 EVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEE 870 (877)
T ss_pred hHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555 4556889999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 001303 1096 ESNRLG 1101 (1104)
Q Consensus 1096 ~l~~l~ 1101 (1104)
.++.|+
T Consensus 871 ~l~~l~ 876 (877)
T COG0525 871 RLAVLK 876 (877)
T ss_pred HHHHhc
Confidence 999886
No 4
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=9.9e-211 Score=1996.38 Aligned_cols=957 Identities=56% Similarity=0.959 Sum_probs=881.9
Q ss_pred cccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC----CCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHH
Q 001303 132 EKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN----KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRM 207 (1104)
Q Consensus 132 ~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~----~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm 207 (1104)
-||+++.+|++.|||+.+|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||
T Consensus 16 ~~~~~~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm 95 (995)
T PTZ00419 16 NKKRNISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRM 95 (995)
T ss_pred hhhhchhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 355677889999999999999999999999999862 3467899999999999999999999999999999999999
Q ss_pred CCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChh
Q 001303 208 SGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEK 287 (1104)
Q Consensus 208 ~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~ 287 (1104)
+||+|+|+|||||||||||.+||+++..+.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.
T Consensus 96 ~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~ 175 (995)
T PTZ00419 96 KGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQ 175 (995)
T ss_pred cCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcc-eE
Q 001303 288 RSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EI 366 (1104)
Q Consensus 288 ~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~-~l 366 (1104)
|+++|+++|++||++|||||+.++|||||.|+|+|||+||+|++..+++++++|+|+..+++|.|++++|++.+++. +|
T Consensus 176 ~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l 255 (995)
T PTZ00419 176 RSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEI 255 (995)
T ss_pred HHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665 99
Q ss_pred EEeeccccccccCceEEecCCccccccccCcEeecCC-CCCceeEEecC-ccccCCCCCCceecCCCCCcchHHHHHHhC
Q 001303 367 VVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF-NGRKIPIICDA-ILVDPKFGTGAVKITPAHDPNDFDVGKRHN 444 (1104)
Q Consensus 367 ~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~-~~~~ipIi~d~-~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~ 444 (1104)
+|||||||||+||+||||||+|+||++|+|+++.||+ +++.+|||+|+ + |++++|||+||+|||||++||++|++||
T Consensus 256 ~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~ 334 (995)
T PTZ00419 256 VVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDEL-VDMEFGTGAVKITPAHDPNDYEIAKRHN 334 (995)
T ss_pred EEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcc-cCCCcCCCCeEeCCCCChHHHHHHHHcC
Confidence 9999999999999999999999999999999999999 89999999999 7 9999999999999999999999999999
Q ss_pred CccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHH
Q 001303 445 LEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAM 524 (1104)
Q Consensus 445 L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~ 524 (1104)
|+++++||++|+|++++| .|.|+.+++||++|++.|+++|++++.++|.|+||+|||||++|++++++||||+|+++++
T Consensus 335 L~~~~~i~~~G~~~~~~~-~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~ 413 (995)
T PTZ00419 335 LPFINIFTLDGKINENGG-EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAK 413 (995)
T ss_pred CCeeeeeCCCceEcCCCc-ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHH
Q 001303 525 EALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALA 604 (1104)
Q Consensus 525 ~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 604 (1104)
++++++ ++++++|+|++++++|.+||+|++|||||||||||||||+|||..|++. ....+++.|+++.+.+++..
T Consensus 414 ~al~~v---~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 488 (995)
T PTZ00419 414 RAVEAV---RNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPE--TDPSDEEPWVVARSEEEALE 488 (995)
T ss_pred HHHHHh---hcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCcc--ccCCCCceEEEcCCHHHHHh
Confidence 999999 8889999999999999999999999999999999999999999877521 11123468999888887765
Q ss_pred HHhhhc--CCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCC
Q 001303 605 VANKKF--SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 682 (1104)
Q Consensus 605 ~~~~~~--~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~P 682 (1104)
.+...+ +.++..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+||||+||+|+|+.++|++|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~P 568 (995)
T PTZ00419 489 KAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLP 568 (995)
T ss_pred hhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCC
Confidence 543332 223457999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHH
Q 001303 683 FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 762 (1104)
Q Consensus 683 Fk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~ 762 (1104)
|++|++||+|+|.+|+|||||+||||||.++|+|+++++|+.++.+||++++|+++|.+||+++||+|||+|||||||||
T Consensus 569 fk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~ 648 (995)
T PTZ00419 569 FKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFG 648 (995)
T ss_pred hHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCC-C----CCCCCChhhHHHHHHHHHHHHHHHHH
Q 001303 763 LVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-L----HPHNLPFSCKWILSVLNKAISRTASS 837 (1104)
Q Consensus 763 L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~-~----~~~~~~~~D~wils~L~~~v~~v~~~ 837 (1104)
|+++++.++|++|+.+++.++++|||||||+++|+++++.+...+... . ....++..|+||+++|+.++..++++
T Consensus 649 l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~ 728 (995)
T PTZ00419 649 LLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEG 728 (995)
T ss_pred HHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877542211110 0 01245678999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccC-CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 838 LNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG-DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 838 ~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~-~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
|++|+|+.|++++|+|+|+++||+||+.+|+|++. .+.. .++.++.+|+.+|+.+++||||||||+|||||++|+.
T Consensus 729 ~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~---~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 729 FKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGE---RKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 99999999999999999999999999999999842 2222 4667899999999999999999999999999999975
Q ss_pred CCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCc--ccEEEEecChhHHHHHHHHHHH
Q 001303 917 PKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNER--LPAIAFCQTKGVSEIIRSHELE 994 (1104)
Q Consensus 917 ~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~--~~~~I~~~~~~~~~~l~~~~~~ 994 (1104)
.. ...+||+.++||.+++.+.|++++..|+.+++++++||++|+++ +|+.+ +.++|.+.+++..+.++.+...
T Consensus 806 ~~--~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~~~~~~~~ 880 (995)
T PTZ00419 806 YL--RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATL---GIPNKTKPDCYVTAKDAELIELIESAENL 880 (995)
T ss_pred cC--CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEEeCCHHHHHHHHHHHHH
Confidence 21 12369999999999888999999999999999999999999999 88544 4455556666667889999999
Q ss_pred HHhhhccceEEEeccC--CCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc
Q 001303 995 IVTLSTSSSLKVLLSG--TDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEK 1070 (1104)
Q Consensus 995 I~~L~~v~~v~i~~~~--~~~~p~~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~k 1070 (1104)
|+.|+++++|++..+. ....|.+|+..++..++++|+++. ||+++|++||+|+++++++++++++++|+|++|++|
T Consensus 881 i~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~k 960 (995)
T PTZ00419 881 ISTLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDK 960 (995)
T ss_pred HHHhcCCCeeEEeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhc
Confidence 9999999999987320 223467787667777899999998 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001303 1071 VPSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1103 (1104)
Q Consensus 1071 aP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~~ 1103 (1104)
||++||+++++||++++++++.+++.|+.|+++
T Consensus 961 Ap~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 961 VPEDVRKLNDEKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 5
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4e-198 Score=1861.10 Aligned_cols=866 Identities=49% Similarity=0.872 Sum_probs=801.0
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 139 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 139 ~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
.|++.|||+.||++||++|+++++|+++.+ ++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 82 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGT 82 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 477899999999999999999999999764 4556999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001303 219 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 298 (1104)
Q Consensus 219 D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 298 (1104)
||||||||.+||+++.+ .|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++
T Consensus 83 D~~Gi~~e~~ve~~l~~-~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 83 DHAGIATQMVVERQLAA-EGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CccchhhHHHHHHHHHh-cCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998854 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeecccccccc
Q 001303 299 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 378 (1104)
Q Consensus 299 L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g 378 (1104)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++.+|+|||||||||+|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~----------------~~~~~i~f~~~~~~~~l~vaTtrPeTl~~ 225 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK----------------GKLWHIRYPLADGSDYLVVATTRPETMLG 225 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhccccccc----------------ceEEEEEEEecCCCcEEEEEeCCcchhhc
Confidence 99999999999999999999999999999998866 57889999999888999999999999999
Q ss_pred CceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccc
Q 001303 379 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 458 (1104)
Q Consensus 379 ~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~ 458 (1104)
|+||||||+|+||++|+|++++||++|+.+|||+|++ |+++||||+||+|||||++||++|++|||+++++||++|+|+
T Consensus 226 ~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~ 304 (874)
T PRK05729 226 DTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTIN 304 (874)
T ss_pred CeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCcc-CCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEc
Confidence 9999999999999999999999999999999999996 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCce
Q 001303 459 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 538 (1104)
Q Consensus 459 ~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i 538 (1104)
+++| .|.||+|++||++|++.|++.|++.+.+++.|++|+|||||++|++++++||||+|+++++++++++ +++++
T Consensus 305 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v---~~~~i 380 (874)
T PRK05729 305 ENPG-EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAV---ENGEI 380 (874)
T ss_pred CCCc-ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHH---hcCCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccc
Q 001303 539 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 618 (1104)
Q Consensus 539 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~ 618 (1104)
+|+|+++++++.+||+|++|||||||||||||||+|||.. +.+.++.+..++ ++ ...++
T Consensus 381 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~------------~~~~v~~~~~~~-------~~--~~~~~ 439 (874)
T PRK05729 381 KFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED------------GEVYVGREEPEA-------RE--KALLT 439 (874)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC------------CcEEeCCccccc-------cc--ccCeE
Confidence 9999999999999999999999999999999999999853 234444433211 11 12489
Q ss_pred cCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCc
Q 001303 619 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 698 (1104)
Q Consensus 619 ~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~ 698 (1104)
|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||++||+|+|+.++|++||++|++||+|+|.+|+
T Consensus 440 ~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 519 (874)
T PRK05729 440 QDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGR 519 (874)
T ss_pred eCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchH
Q 001303 699 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 778 (1104)
Q Consensus 699 KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~ 778 (1104)
|||||+||||||.|+|+ +||+|||||||++.++.++|++|+.+
T Consensus 520 KMSKSlGNvIdP~dvi~-------------------------------------~yGaDalR~~ll~~~~~~~Di~fs~~ 562 (874)
T PRK05729 520 KMSKSKGNVIDPLDLID-------------------------------------KYGADALRFTLAALASPGRDIRFDEE 562 (874)
T ss_pred CcccCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceeCHH
Confidence 99999999999999999 89999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhH
Q 001303 779 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 858 (1104)
Q Consensus 779 ~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~ 858 (1104)
.+.++++|+|||||++||+++++.+ +.+........++..|+||+++|+.+++.+.++|++|+|+.|++.|++|+|+++
T Consensus 563 ~l~~~~~~~nkl~N~~Rf~~~~~~~-~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~ 641 (874)
T PRK05729 563 RVEGYRNFANKLWNASRFVLMNLEG-ADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEF 641 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877543 221111112245788999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCC
Q 001303 859 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 938 (1104)
Q Consensus 859 ~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~ 938 (1104)
||+||+.+|||++ + . .++.++.+|+.+++.+++||||||||+|||||++|+... ..+||+.++||++++.+
T Consensus 642 ~~~Yle~~k~~l~-~--~---~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~---~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 642 CDWYLELAKPVLQ-E--A---AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLG---IEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHHHhh-h--h---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccCC---CCCceeecCCCCCCccc
Confidence 9999999999987 2 1 356788999999999999999999999999999998531 13589999999998888
Q ss_pred CcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcc--cEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCC
Q 001303 939 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL--PAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPT 1016 (1104)
Q Consensus 939 ~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~--~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~ 1016 (1104)
|+.++..|+.+++++++||++|+++ +|+.+. .+++.+.+....+.++.+.+.|+.|+++++|+++.. .+..|+
T Consensus 713 -~~~~~~~~~~~~~ii~~ir~~r~~~---~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~~-~~~~~~ 787 (874)
T PRK05729 713 -DEAAEAEFEWLKELITAIRNIRAEM---NIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEILAD-DEEAPE 787 (874)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEecC-CCcCCc
Confidence 8899999999999999999999999 885444 455555555566788999999999999999999765 344678
Q ss_pred CceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1017 DCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFE 1094 (1104)
Q Consensus 1017 ~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~ 1094 (1104)
+|+. ++..++++|+++. ||+++|++||+|+++++++++++++++|+|++|++|||++|++++++|+++++++++.++
T Consensus 788 ~~~~-~v~~~~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~ 866 (874)
T PRK05729 788 GAAS-AVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLK 866 (874)
T ss_pred CceE-EEecCeEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 5667899999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001303 1095 NESNRLG 1101 (1104)
Q Consensus 1095 ~~l~~l~ 1101 (1104)
+.|+.|+
T Consensus 867 ~~l~~l~ 873 (874)
T PRK05729 867 ERLARLK 873 (874)
T ss_pred HHHHHhc
Confidence 9999886
No 6
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-194 Score=1828.46 Aligned_cols=873 Identities=44% Similarity=0.782 Sum_probs=796.0
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 139 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 139 ~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
+|++.|||+. |++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 3678899999 999999999999999987666788999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001303 219 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 298 (1104)
Q Consensus 219 D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 298 (1104)
||||||||.+||+.+ ++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++
T Consensus 135 D~~Gl~~e~~vek~l-~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 213 (958)
T PLN02943 135 DHAGIATQLVVEKML-ASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVR 213 (958)
T ss_pred CcccchhHHHHHHHH-HHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999988 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCc-ceEEEeeccccccc
Q 001303 299 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETML 377 (1104)
Q Consensus 299 L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~-~~l~vaTTrPeTl~ 377 (1104)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++ .+|+|||||||||+
T Consensus 214 l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~----------------~~~~~i~f~l~~~~~~~l~vaTTrPeTl~ 277 (958)
T PLN02943 214 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGGSEDFLTIATTRPETLF 277 (958)
T ss_pred HHHCCCEEecCceeccCCCCCCCcCHHHhhccccc----------------ccEEEEEEEEcCCCCCEEEEEeCChhhhh
Confidence 99999999999999999999999999999998865 56789999997654 68999999999999
Q ss_pred cCceEEecCCccccccccCcEeecCCC-CCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCc
Q 001303 378 GDTAIAIHPEDARYSHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 456 (1104)
Q Consensus 378 g~~aiaV~P~d~ry~~l~G~~~~~P~~-~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~ 456 (1104)
||+||||||+|+||++|+|++++||++ |+.+|||+|++ |+++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 278 ~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 356 (958)
T PLN02943 278 GDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRY-VDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356 (958)
T ss_pred cceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCc-ccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce
Confidence 999999999999999999999999996 99999999996 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 457 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 457 ~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
|++++| . .|++||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+|+++++++++++ +++
T Consensus 357 ~~~~~g-~----~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v---~~~ 428 (958)
T PLN02943 357 LNEVAG-L----YWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAV---ENG 428 (958)
T ss_pred eeccCC-c----cHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHH---hcC
Confidence 997665 4 49999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEc--cCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCC
Q 001303 537 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVT--LEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK 614 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 614 (1104)
+++|+|+++++++.+||+|++|||||||||||||||+|||. .|+ ..|+++++.+++...+...|+. .
T Consensus 429 ~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~g~-~ 497 (958)
T PLN02943 429 ELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCE----------EDYIVARSAEEALEKAREKYGK-D 497 (958)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCC----------ceEEecCcHHHHHHHhhhhcCC-c
Confidence 99999999999999999999999999999999999999984 221 2588899988887766655643 3
Q ss_pred cccccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEcccee
Q 001303 615 FEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIR 693 (1104)
Q Consensus 615 ~~l~~d~dvlDtWFdS~l~p~s~~g~p~~-~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~ 693 (1104)
..++|++||||||||||+||++++|||+. +++|++|||+|++++|+||+|||++||+|+|+.++|+.||++|++||+++
T Consensus 498 ~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~ 577 (958)
T PLN02943 498 VEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIR 577 (958)
T ss_pred hheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEE
Confidence 35889999999999999999999999984 57899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccc
Q 001303 694 DAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKI 773 (1104)
Q Consensus 694 D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di 773 (1104)
|.+|+|||||+||||+|.++|+ +||+|++||||++.. .++|+
T Consensus 578 ~~~G~KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~-~~~d~ 619 (958)
T PLN02943 578 DSQGRKMSKTLGNVIDPLDTIK-------------------------------------EFGTDALRFTLALGT-AGQDL 619 (958)
T ss_pred CCCCCcccCcCCCCCCHHHHHH-------------------------------------hcCChHHHHHHHhCC-CCCCc
Confidence 9999999999999999999998 899999999999865 58999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhCCC-------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc
Q 001303 774 NLDIQRVVGYRQWCNKLWNAVRFSMSKLGEG-------------FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNS 840 (1104)
Q Consensus 774 ~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~-------------~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~ 840 (1104)
+|+.+.+.+.++|+|||||+++|+++++.+. |.+.. ....++..|+||+++|+.++++++++|++
T Consensus 620 ~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~D~wilskl~~~i~~v~~~~e~ 697 (958)
T PLN02943 620 NLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE--SLLSLPLPECWVVSKLHELIDSVTTSYDK 697 (958)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc--cccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876431 21110 11235788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCC
Q 001303 841 YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 920 (1104)
Q Consensus 841 ~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~ 920 (1104)
|+|+.|++++|+|+|+++||+|||.+||+++.++.. ..++.++.+|+.+++.+++||||||||+|||||++|+..
T Consensus 698 y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~--- 772 (958)
T PLN02943 698 YFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR--- 772 (958)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC---
Confidence 999999999999999999999999999998765321 145678999999999999999999999999999999742
Q ss_pred CCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCC--CCcccEEEEecChhHHHHHHHHHHHHHhh
Q 001303 921 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIRSHELEIVTL 998 (1104)
Q Consensus 921 ~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i--~~~~~~~I~~~~~~~~~~l~~~~~~I~~L 998 (1104)
.+||+.++||++. .+.|+.++..++.+++++++||++|+++ ++ +.++.++|.+.+ +..+.+..+...|+.|
T Consensus 773 --~~si~~~~wP~~~-~~~d~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~~~~~i~~~~-~~~~~~~~~~~~i~~l 845 (958)
T PLN02943 773 --KEALIVSPWPQTS-LPKDLKSIKRFENLQSLTRAIRNARAEY---SVEPAKRISASIVASA-EVIEYISKEKEVLALL 845 (958)
T ss_pred --CCceeecCCCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcccEEEecCh-hHHHHHHHHHHHHHHH
Confidence 3599999999986 5678889999999999999999999999 88 345566666554 4467889999999999
Q ss_pred hccc--eEEEeccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHH
Q 001303 999 STSS--SLKVLLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSR 1074 (1104)
Q Consensus 999 ~~v~--~v~i~~~~~~~~p~~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~ 1074 (1104)
++++ ++++... ......+|+..++..++++|+++. ||+++|++||+|+++++++++++++++|+|++|++|||++
T Consensus 846 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~e 924 (958)
T PLN02943 846 SRLDLQNVHFTDS-PPGDANQSVHLVASEGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPED 924 (958)
T ss_pred hcCcccccccccC-CCccccceeEEEecCceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHH
Confidence 9864 7766432 111112355556667899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1075 IQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1075 v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
|++++++||++++++++.+++.|+.|++
T Consensus 925 vv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 925 VVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999986
No 7
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-191 Score=1812.44 Aligned_cols=880 Identities=47% Similarity=0.856 Sum_probs=805.9
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCCcccCC-CCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEec
Q 001303 138 KQMAKEYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP 216 (1104)
Q Consensus 138 ~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~-~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~ 216 (1104)
..+++.|||+.||.+||++|+++++|+++. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+|
T Consensus 13 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~ 92 (1052)
T PRK14900 13 TELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92 (1052)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCC
Confidence 347789999999999999999999999864 3567899999999999999999999999999999999999999999999
Q ss_pred cCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q 001303 217 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 296 (1104)
Q Consensus 217 G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F 296 (1104)
||||||||||.+||+.+....|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+|+|
T Consensus 93 G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 172 (1052)
T PRK14900 93 GTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVF 172 (1052)
T ss_pred CCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHH
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeecccccc
Q 001303 297 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETM 376 (1104)
Q Consensus 297 ~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl 376 (1104)
.+||++|||||+.++|||||.|+|+|||+||+|+++.. |.+++++|++.+++.+|+|||||||||
T Consensus 173 ~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~---------------~~~~~i~f~l~~~~~~l~vaTTrPeTl 237 (1052)
T PRK14900 173 VRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQ---------------GELWSFAYPLADGSGEIVVATTRPETM 237 (1052)
T ss_pred HHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCC---------------CeEEEEEEEecCCCcEEEEEECchhhh
Confidence 99999999999999999999999999999999986443 678899999988778999999999999
Q ss_pred ccCceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCc
Q 001303 377 LGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 456 (1104)
Q Consensus 377 ~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~ 456 (1104)
+||+||||||+|+||++|+|++|.||+.++.+|||+|..+||++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 238 ~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 317 (1052)
T PRK14900 238 LGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGR 317 (1052)
T ss_pred hcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcE
Confidence 99999999999999999999999999999999999876569999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 457 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 457 ~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
|++++| .|.|+++++||+.|+++|++.|++++.++|.|+||+|||||++|++++++||||+|+.+++++++++ +++
T Consensus 318 ~~~~~~-~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v---~~~ 393 (1052)
T PRK14900 318 MTAEAG-PLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAV---EQG 393 (1052)
T ss_pred EecCCc-ccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHH---hcC
Confidence 999888 9999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCC-Cc
Q 001303 537 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK-KF 615 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~ 615 (1104)
+++|+|+++++++.+||++++|||||||||||||||+|||.. +.|+++.... ..||.+ +.
T Consensus 394 ~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~------------~~~~v~~~~~-------~~~~~~~~~ 454 (1052)
T PRK14900 394 RTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD------------GHVTVARETP-------EACSTCGKA 454 (1052)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC------------CcEEeccccc-------ccccccCcc
Confidence 899999999999999999999999999999999999999852 3455554322 123322 23
Q ss_pred ccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCC
Q 001303 616 EMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA 695 (1104)
Q Consensus 616 ~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~ 695 (1104)
.++|++|||||||||++||++++|||+++++|++|||+|++++|+||+|||++||+++|+.++|.+||++|++||||+|.
T Consensus 455 ~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~ 534 (1052)
T PRK14900 455 ELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDE 534 (1052)
T ss_pred ceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECC
Confidence 58899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001303 696 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 775 (1104)
Q Consensus 696 ~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f 775 (1104)
+|+|||||+||||||.++|+ +||+|+|||||++.++.++|++|
T Consensus 535 ~G~KMSKSkGNvIdP~dvIe-------------------------------------~yGaDalR~~L~~~~~~g~D~~f 577 (1052)
T PRK14900 535 KGQKMSKTKGNVIDPLVITE-------------------------------------QYGADALRFTLAALTAQGRDIKL 577 (1052)
T ss_pred CCCCccCCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhcCCCCCCCcc
Confidence 99999999999999999998 89999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCC-CCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001303 776 DIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH-PHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 854 (1104)
Q Consensus 776 ~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~-~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~ 854 (1104)
+++.+.++++|+|+|||+.||+++++.+ |.+..... ...++..|+||+++|+.++..+.++|++|+|+.|++.||+|+
T Consensus 578 s~~~l~~~~~f~nkl~N~~R~~~~~~~~-~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~ 656 (1052)
T PRK14900 578 AKERIEGYRAFANKLWNASRFALMNLSG-YQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFV 656 (1052)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999876643 43322111 123567899999999999999999999999999999999999
Q ss_pred HhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCC-CCCCCcccccCCC
Q 001303 855 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC-ATKESIMLCEYPS 933 (1104)
Q Consensus 855 ~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~-~~~~SI~~~~wP~ 933 (1104)
|+++||+||+.+|++++.++.. .++.++.+|+.+|+.+++||||||||+||+||+.|+...+. ...+||+.++||.
T Consensus 657 ~~~~~n~Yie~~k~~l~~~~~~---~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~ 733 (1052)
T PRK14900 657 WHELCDWYIELAKEALASEDPE---ARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPR 733 (1052)
T ss_pred HHhhhHHHHHhccHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCC
Confidence 9999999999999998765443 45678899999999999999999999999999999753110 1136999999999
Q ss_pred CCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcc------cEEEEecChhHHHHHHH-HHHHHHhhhccceEEE
Q 001303 934 AVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL------PAIAFCQTKGVSEIIRS-HELEIVTLSTSSSLKV 1006 (1104)
Q Consensus 934 ~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~------~~~I~~~~~~~~~~l~~-~~~~I~~L~~v~~v~i 1006 (1104)
+++ +|+.++..|+.++++++.||++|+++ +|+.+. .++|.+.+.+..+.++. +..+|+.|+++++|.+
T Consensus 734 ~~~--~d~~~e~~~~~v~~ii~~iR~~R~~~---~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~ 808 (1052)
T PRK14900 734 KGE--ADEAAEAAFRPVLGIIDAVRNIRGEM---GIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRL 808 (1052)
T ss_pred CCc--ccHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEe
Confidence 876 68889999999999999999999999 885444 35666666666777888 8999999999999998
Q ss_pred eccCCCCCCCCceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHH
Q 001303 1007 LLSGTDEAPTDCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLA 1084 (1104)
Q Consensus 1007 ~~~~~~~~p~~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~ 1084 (1104)
+.. ....+.+|++.+++.++++|+++. ||+++|++||+|+++++++++++++++|+|++|+.+||++++++++++++
T Consensus 809 ~~~-~~~~~~~~~~~~v~~~~ev~l~l~~~iD~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~ 887 (1052)
T PRK14900 809 VVA-AATAPAPQSAVGVGPGFEVRVPLAGVIDLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAE 887 (1052)
T ss_pred ecc-ccccCcccceEEecCceEEEEECCcccCHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHH
Confidence 754 222356788888888999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 001303 1085 KLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1085 ~~~~el~~i~~~l~~l~~ 1102 (1104)
+++++++.+++.|+.|+.
T Consensus 888 ~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 888 ELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999875
No 8
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.1e-190 Score=1794.61 Aligned_cols=856 Identities=48% Similarity=0.845 Sum_probs=789.6
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
|++.|||++||++||++|+++++|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 46789999999999999999999999876677899999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||||||.+||+++. ..|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+|+|.+|
T Consensus 81 ~~Glp~e~~vek~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 159 (861)
T TIGR00422 81 HAGIATQVKVEKKLG-AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRL 159 (861)
T ss_pred cCCCcHHHHHHHHhc-ccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999884 4688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCc-ceEEEeecccccccc
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETMLG 378 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~-~~l~vaTTrPeTl~g 378 (1104)
|++|||||+.++|+|||.|+|+|||+||+|+++. |.+++++|++.+++ .+|+|||||||||+|
T Consensus 160 ~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~----------------~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~ 223 (861)
T TIGR00422 160 YEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVK----------------GKLYYIRYPLANGSKDYLVVATTRPETMFG 223 (861)
T ss_pred HHCCCeeecCcccccCCCCCCcchHhHhhccccc----------------ceEEEEEEEecCCCCCEEEEEeCCcchhhh
Confidence 9999999999999999999999999999998876 56889999997765 799999999999999
Q ss_pred CceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccc
Q 001303 379 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 458 (1104)
Q Consensus 379 ~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~ 458 (1104)
|+||||||+|+||++|+|+++.||++++++|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|+++
T Consensus 224 ~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~ 302 (861)
T TIGR00422 224 DTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEY-VDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLN 302 (861)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCC-CCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEc
Confidence 9999999999999999999999999999999999996 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCce
Q 001303 459 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 538 (1104)
Q Consensus 459 ~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i 538 (1104)
++|| .|.||++++||++|+++|+++|++.+.+++.|++|+|||||++|++++++||||+++.+++++++++ +++++
T Consensus 303 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~---~~~~i 378 (861)
T TIGR00422 303 ENAG-KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAA---EEGEI 378 (861)
T ss_pred CCCc-ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHh---hcCCe
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 77889
Q ss_pred EEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccc
Q 001303 539 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 618 (1104)
Q Consensus 539 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~ 618 (1104)
+|+|+++++++.+||++++|||||||||||||||+|||..| +.+.++.+..++.... .++ ....+.
T Consensus 379 ~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~-----------~~~~v~~~~~~~~~~~--~~~-~~~~~~ 444 (861)
T TIGR00422 379 KFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKEC-----------GEVYVAKEEPLPDDKT--NTG-PSVELE 444 (861)
T ss_pred EEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCC-----------CcEEeccchHHhhhhh--ccC-CcccEE
Confidence 99999999999999999999999999999999999999755 3455555555544332 122 224699
Q ss_pred cCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCc
Q 001303 619 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 698 (1104)
Q Consensus 619 ~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~ 698 (1104)
|++||||||||||+||++++|||.++.+|++|||+|++++|+||+|||+++|+++++.++|+.||++|++||+|+|.+|+
T Consensus 445 ~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 524 (861)
T TIGR00422 445 QDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGR 524 (861)
T ss_pred ECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchH
Q 001303 699 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 778 (1104)
Q Consensus 699 KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~ 778 (1104)
|||||+||+|+|.++|+ +||+|++||||++.++.++|++|+++
T Consensus 525 KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~~~~~d~~f~~~ 567 (861)
T TIGR00422 525 KMSKSLGNVIDPLDVIE-------------------------------------KYGADALRFTLASLVTPGDDINFDWK 567 (861)
T ss_pred CCCcCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceecHH
Confidence 99999999999999998 89999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhH
Q 001303 779 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 858 (1104)
Q Consensus 779 ~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~ 858 (1104)
.+.++++|+|||||+.||+.+++.. +.. ........+..|+||+++|+.+++.++++|++|+|+.|++.|++|+|+++
T Consensus 568 ~~~~~~~~~nkl~N~~rf~~~~~~~-~~~-~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~ 645 (861)
T TIGR00422 568 RVESARNFLNKLWNASRFVLMNLSD-DLE-LSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDF 645 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 210 00011235688999999999999999999999999999999999988999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCC
Q 001303 859 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 938 (1104)
Q Consensus 859 ~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~ 938 (1104)
||+||+.+|||++.++.. .++.++.+|+.+|+.+++||||||||+||+||++|+.. .+||+.++||++++.+
T Consensus 646 ~n~Yie~~k~~~~~~~~~---~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~-----~~si~~~~~P~~~~~~ 717 (861)
T TIGR00422 646 CDWYIELVKYRLYNGNEA---EKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG-----ADSIMLQSYPVVDAEF 717 (861)
T ss_pred HHHHHHHhHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc-----CCceeecCCCCccccc
Confidence 999999999998765433 56788999999999999999999999999999999752 3699999999999889
Q ss_pred CcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcc--cEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCC
Q 001303 939 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL--PAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPT 1016 (1104)
Q Consensus 939 ~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~--~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~ 1016 (1104)
.|++++..|+.++++++++|++|+++ +|+.+. ++++.+.+....+.++.+...|+.|+++++|+++.. . .+.
T Consensus 718 ~d~~~e~~~~~l~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~~-~--~~~ 791 (861)
T TIGR00422 718 VDEEAEKAFELLKEIIVSIRNLKAES---NIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIE-K--PEV 791 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeecc-C--Ccc
Confidence 99999999999999999999999999 885444 455555555566789999999999999999998754 2 234
Q ss_pred CceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHH
Q 001303 1017 DCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLA 1084 (1104)
Q Consensus 1017 ~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~ 1084 (1104)
+|+...+..++++++++. +|.++|++||.|+++++++++++++++|+|++|++|||++||+++++||+
T Consensus 792 ~~~~~~v~~~~~~~~~l~~~~d~~~e~~~l~k~l~~~~~~i~~~~~kl~n~~f~~kAp~~vv~~e~~kl~ 861 (861)
T TIGR00422 792 TEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861 (861)
T ss_pred ccceEEEccCcEEEEEhHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhcCCHHHHHHHHhhcC
Confidence 666677778999999988 99999999999999999999999999999999999999999999999974
No 9
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=7.7e-175 Score=1655.31 Aligned_cols=811 Identities=21% Similarity=0.348 Sum_probs=709.3
Q ss_pred cchhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeee
Q 001303 136 MSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNAL 213 (1104)
Q Consensus 136 ~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl 213 (1104)
|...+++.|||..+|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+
T Consensus 64 ~~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~ 143 (1205)
T PTZ00427 64 TFTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVE 143 (1205)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeec
Confidence 345677889999999999999999999998764 456789999999999999999999999999999999999999999
Q ss_pred EeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q 001303 214 WVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVT 293 (1104)
Q Consensus 214 ~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~ 293 (1104)
|+|||||||||||.+||++++........++|+++|+++|++|+.+|++.+++|+++||+|+||+++|+||||.|+++|+
T Consensus 144 ~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~ 223 (1205)
T PTZ00427 144 RKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVW 223 (1205)
T ss_pred cCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHH
Confidence 99999999999999999987432222334699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEccEeeeecCCCCcccccccc--cccccCcce-EEeecC-------------cccccccceEeeEee
Q 001303 294 EAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKRE-MRNVPG-------------YEKQVEFGVLTSFAY 357 (1104)
Q Consensus 294 ~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EV--e~~~~~~~t-~~~~~~-------------y~~~~~~g~l~~~~~ 357 (1104)
|+|.+||++|||||+.++|+|||.|+|+|||+|| +|+++.+++ +++||. +..++++|.++++.|
T Consensus 224 ~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y 303 (1205)
T PTZ00427 224 WVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLY 303 (1205)
T ss_pred HHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeecc
Confidence 9999999999999999999999999999999999 799999986 456643 334566788999998
Q ss_pred ecC-----------------CCcceEEEeeccccccccCceEEecCCcc--cc---------------------------
Q 001303 358 PLE-----------------GGLGEIVVATTRVETMLGDTAIAIHPEDA--RY--------------------------- 391 (1104)
Q Consensus 358 ~l~-----------------~~~~~l~vaTTrPeTl~g~~aiaV~P~d~--ry--------------------------- 391 (1104)
++. .++.+|+||||||||||||+||||||+++ +|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 383 (1205)
T PTZ00427 304 NNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNV 383 (1205)
T ss_pred ccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccc
Confidence 872 12468999999999999999999999965 22
Q ss_pred -----------ccccCcEeecCC---------CCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCC--c---
Q 001303 392 -----------SHLHGKFAIHPF---------NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL--E--- 446 (1104)
Q Consensus 392 -----------~~l~G~~~~~P~---------~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L--~--- 446 (1104)
++|+|++|.+|+ .++.+|||+|++ |++++|||+||+|||||++||++|++||| +
T Consensus 384 ~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~-V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~ 462 (1205)
T PTZ00427 384 EDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDF-VTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKN 462 (1205)
T ss_pred cccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCc-cCCCCCceeeEecCCCChhHHHHHHHcCCCCcccc
Confidence 246688888887 267899999996 99999999999999999999999999999 2
Q ss_pred -cceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHH
Q 001303 447 -FINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAME 525 (1104)
Q Consensus 447 -~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~ 525 (1104)
++++||++|+|++++| +|.|+.+++||+.|++.|+++|+|++.+++.|+||+|||||+||++++++||||++++++++
T Consensus 463 ~~~~~vd~~G~~~~~~~-~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~ 541 (1205)
T PTZ00427 463 IFIDPLDANGYFTNEVE-EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNE 541 (1205)
T ss_pred ccccccCCCceecCCCc-ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHH
Confidence 7889999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceEEecccc-HHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHH
Q 001303 526 ALYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALA 604 (1104)
Q Consensus 526 ~~~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 604 (1104)
++++. ++++|+|+++ +++|.+||+|++|||||||||||||||+|+|..|+ .+++..+.+++..
T Consensus 542 ~l~~~-----~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~-----------~~~~i~s~~el~~ 605 (1205)
T PTZ00427 542 LVKNN-----ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKME-----------TVICVESIKHLEE 605 (1205)
T ss_pred HHHcC-----CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCC-----------eEeccCCHHHHHH
Confidence 99876 7899999999 69999999999999999999999999999997552 2333333333222
Q ss_pred HHh----------------hhcCC--CCcccccCCCceeeEeccCCcccccccCCCC--ChhhhhhCCcCcccccccccc
Q 001303 605 VAN----------------KKFSG--KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD--TDDLKAFYPTSVLETGHDILF 664 (1104)
Q Consensus 605 ~~~----------------~~~~~--~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~--~~d~~~~~P~d~~~~G~Dil~ 664 (1104)
... -.||. ....++|++||||||||||+||++++|||.+ +++|+++||+|++++|+||+|
T Consensus 606 ~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~r 685 (1205)
T PTZ00427 606 LSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTR 685 (1205)
T ss_pred HhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhc
Confidence 111 01221 1125899999999999999999999999984 678999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccC
Q 001303 665 FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQK 744 (1104)
Q Consensus 665 fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~ 744 (1104)
|||++|+++|+.++|+.||++|++||||+|++|+|||||+||||||.++|+
T Consensus 686 gWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~----------------------------- 736 (1205)
T PTZ00427 686 GWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD----------------------------- 736 (1205)
T ss_pred cHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHhccC-cccccccchHHHH-HHHHHHHHHHHHHHHHhhhhCC-------CCCCCCCCCCCC
Q 001303 745 ADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVV-GYRQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHPHN 815 (1104)
Q Consensus 745 ~~fp~~i~~yGaDalR~~L~~~~~-~~~di~f~~~~i~-~~r~f~nKl~N~~rf~l~~~~~-------~~~p~~~~~~~~ 815 (1104)
+||||||||||++.+. .++|++|+.+.+. .+++|++++||+++|+.+++.+ +|.+........
T Consensus 737 --------kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~ 808 (1205)
T PTZ00427 737 --------KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKN 808 (1205)
T ss_pred --------hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCccccccc
Confidence 9999999999998766 4789999999985 7899999999999999886642 222211100123
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-CcccHHHHHHHHHHHHHHHHH
Q 001303 816 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFASERSAAQHVLWVCLET 894 (1104)
Q Consensus 816 ~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~-~~~~~~~r~~a~~~L~~~l~~ 894 (1104)
.+.+|+||+++|+++++.++++|++|+|+.|+++|++|++ ++|||||+.+|++++.+ +.. .+..++.||+.+|..
T Consensus 809 ~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~ 884 (1205)
T PTZ00427 809 DNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHL 884 (1205)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999995 69999999999998865 232 566789999999999
Q ss_pred HHHHHhchhhHHHHHHHHHCCCCCC--------------------CCCCCCcccccCCCCCCCC-CcHHhHHHhHHHHHH
Q 001303 895 GLRLLHPFMPFVTEELWQRLPQPKG--------------------CATKESIMLCEYPSAVEGW-TDERAEFEMDLVEST 953 (1104)
Q Consensus 895 ~l~LL~PfmPfitEeLwq~L~~~~~--------------------~~~~~SI~~~~wP~~~e~~-~d~~~e~~~e~i~~i 953 (1104)
+++||||||||+||+||++|+...+ ....+|||++.||++++.+ +|++++..|+.++++
T Consensus 885 ~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~i 964 (1205)
T PTZ00427 885 FTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDV 964 (1205)
T ss_pred HHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHH
Confidence 9999999999999999999974210 0013699999999998876 799999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcccEE---EEecChhHHHHHHHHHHHHHhhhccceEEEec
Q 001303 954 VRCIRSLRAEVLGKQKNERLPAI---AFCQTKGVSEIIRSHELEIVTLSTSSSLKVLL 1008 (1104)
Q Consensus 954 i~~iRslr~~~~~k~i~~~~~~~---I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1008 (1104)
++.+|++|++. +++.+.++. |.+.+....+.++.+.++|+.++|+.+|++..
T Consensus 965 i~~~R~~R~~~---~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~ 1019 (1205)
T PTZ00427 965 ILLGRVLRERR---KVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSN 1019 (1205)
T ss_pred HHHHHHHHHHc---CCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEe
Confidence 99999999999 887666643 44455556677889999999999999998765
No 10
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.7e-174 Score=1648.10 Aligned_cols=837 Identities=27% Similarity=0.420 Sum_probs=739.1
Q ss_pred chhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeE
Q 001303 137 SKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW 214 (1104)
Q Consensus 137 ~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~ 214 (1104)
...+++.|||.++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 4 ~~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~ 83 (975)
T PRK06039 4 YPEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVER 83 (975)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccC
Confidence 34577899999999999999999999998653 5678999999999999999999999999999999999999999999
Q ss_pred eccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q 001303 215 VPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 294 (1104)
Q Consensus 215 ~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~ 294 (1104)
+|||||||||||.+||++++.......+++|+++|+++|++|+.++++.|++||++||+|+||+|+|+||||.|+++|+|
T Consensus 84 ~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~ 163 (975)
T PRK06039 84 RAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWW 163 (975)
T ss_pred cCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHH
Confidence 99999999999999999874322234568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEccEeeeecCCCCccccccccc--ccccCcceEEeecCcccccccceEeeEeeecCC-CcceEEEeec
Q 001303 295 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATT 371 (1104)
Q Consensus 295 ~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe--~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~-~~~~l~vaTT 371 (1104)
+|.+||++|||||+.++|||||.|+|+|||+||+ |+++.++ .++++|++.+ ++.+|+||||
T Consensus 164 ~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~----------------~~~v~f~l~~~~~~~l~i~TT 227 (975)
T PRK06039 164 ALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDP----------------SVYVKFKLKGEENEYLLAWTT 227 (975)
T ss_pred HHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCc----------------eEEEEEEecCCCCCEEEEEEC
Confidence 9999999999999999999999999999999999 8887754 5689999964 5679999999
Q ss_pred cccccccCceEEecCCc---------ccc-----------------------ccccCcEeecCCC---C--CceeEEecC
Q 001303 372 RVETMLGDTAIAIHPED---------ARY-----------------------SHLHGKFAIHPFN---G--RKIPIICDA 414 (1104)
Q Consensus 372 rPeTl~g~~aiaV~P~d---------~ry-----------------------~~l~G~~~~~P~~---~--~~ipIi~d~ 414 (1104)
|||||+||+||||||++ ++| ++|+|+++.|||. + +.+|||+|+
T Consensus 228 rP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~ 307 (975)
T PRK06039 228 TPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLAD 307 (975)
T ss_pred CccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecC
Confidence 99999999999999998 677 7899999999997 3 479999999
Q ss_pred ccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeeccc
Q 001303 415 ILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNE 494 (1104)
Q Consensus 415 ~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~ 494 (1104)
+ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|+|+.+++||++|++.|+++|++++.+++.
T Consensus 308 ~-V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~ 385 (975)
T PRK06039 308 F-VTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVKDADKEIIRDLKERGLLFKAETYE 385 (975)
T ss_pred c-cCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHHHhhHHHHHHHHhCCCEeeeeeec
Confidence 6 9999999999999999999999999999999999999999999888 9999999999999999999999999999999
Q ss_pred ccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHH-HHHHHhccCCCeeeeccCCCcccceE
Q 001303 495 MRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA-EWRRWLEAIRDWCVSRQLWWGHQIPA 573 (1104)
Q Consensus 495 ~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~-~~~~wl~~l~DWcISRq~~WG~pIP~ 573 (1104)
|+||+|||||++|++++++||||+++++++++++++ ++++|+|+++++ ++.+||++++|||||||||||||||+
T Consensus 386 h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~-----~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPi 460 (975)
T PRK06039 386 HSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN-----QKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPI 460 (975)
T ss_pred CCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh-----CCeEEECcccchhhHHHHHhcCccceeeeccccCCcceE
Confidence 999999999999999999999999999999999998 569999999999 99999999999999999999999999
Q ss_pred EEEccCcchhhccCCCCCceEEecCHHHHHHHH-----------------hhhcCCCCcccccCCCceeeEeccCCcccc
Q 001303 574 WYVTLEDDELKELGSYNDHWIVARDEKEALAVA-----------------NKKFSGKKFEMCQDPDVLDTWFSSGLFPLS 636 (1104)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------------~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s 636 (1104)
|+|..|+ .+.+..+.++..... ...||. +..++|++||||||||||++|++
T Consensus 461 w~~~~~g-----------~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~-~~~~~r~~dVlDvWFdSg~~p~a 528 (975)
T PRK06039 461 WRCEDCG-----------RIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPD-GGTMRRVPDVIDVWFDSGSMPYA 528 (975)
T ss_pred EEecCCC-----------eEEEeccHHHHHHHhCCCcchhhhcccccccccccCCC-CcceEeccccccceeecCCccHH
Confidence 9997663 233333444332221 112332 44699999999999999999999
Q ss_pred cccCCCCC-hhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccccc
Q 001303 637 VLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 715 (1104)
Q Consensus 637 ~~g~p~~~-~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~ 715 (1104)
++|||.++ +.|++|||+|++++|+||+|||+++|+++|+.++|..||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 529 ~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~ 608 (975)
T PRK06039 529 QLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD 608 (975)
T ss_pred HhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH
Confidence 99999864 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHH-HHHHHHHHHHHHHHH
Q 001303 716 GISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR-VVGYRQWCNKLWNAV 794 (1104)
Q Consensus 716 g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~-i~~~r~f~nKl~N~~ 794 (1104)
+||+|+|||||++.++.++|++|+.+. +..+++++++|||++
T Consensus 609 -------------------------------------~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~ 651 (975)
T PRK06039 609 -------------------------------------KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVY 651 (975)
T ss_pred -------------------------------------HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHH
Confidence 899999999999998889999999999 788899999999999
Q ss_pred HHHhh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhccccc
Q 001303 795 RFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA 871 (1104)
Q Consensus 795 rf~l~--~~~~~~~p~~~-~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~ 871 (1104)
+|+.. ++. ++.+... .....++..|+||+++|+.++..++++|++|+|+.|++.|++|+ +++||||++.+|++++
T Consensus 652 ~f~~~y~~~~-~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w 729 (975)
T PRK06039 652 SFFVLYANLD-GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFW 729 (975)
T ss_pred HHHHHHhhhc-cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhc
Confidence 99763 332 2332211 11224578899999999999999999999999999999999998 9999999999999877
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHH
Q 001303 872 GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVE 951 (1104)
Q Consensus 872 ~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~ 951 (1104)
..... ..++.++.+|+.+|..+++||||||||+||+||+.|+.. ...+||+.++||++++.+.|+.++..|+.++
T Consensus 730 ~~~~~--~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~---~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~ 804 (975)
T PRK06039 730 KEEDD--PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE---DAPESVHLADWPEVDESLIDEELEEAMDLVR 804 (975)
T ss_pred cCCCc--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc---CCCCeeEecCCCCCccccCCHHHHHHHHHHH
Confidence 54211 146778899999999999999999999999999999752 1246999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcccE---EEEecChhHHHHHHHHHHHHHhhhccceEE----EeccCCCCCCCCceEEeee
Q 001303 952 STVRCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLK----VLLSGTDEAPTDCAFQNVN 1024 (1104)
Q Consensus 952 ~ii~~iRslr~~~~~k~i~~~~~~---~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~----i~~~~~~~~p~~~~~~~v~ 1024 (1104)
++++.+|++|++. +|+.+.++ +|.+.+ +..+.++.+.++|+.++|+.+|. +... .|+|......
T Consensus 805 ~ii~~~r~~r~~~---~i~~~~pl~~~~v~~~~-~~~~~~~~~~~~i~~~~nv~~v~~~~~~~~~----~~~~~~~~~~- 875 (975)
T PRK06039 805 EIVSLGRSARKKA---GIKVRQPLSKITVAEDE-EVAEALERYEDLIKDELNVKEVPEEVEIEEE----APEGYAAAEE- 875 (975)
T ss_pred HHHHHHHHHHHHc---CCCCCCccceEEEecCH-HHHHHHHHHHHHHHHHhCcccchhheEEEEe----cCCCceEEee-
Confidence 9999999999999 88766654 333333 35677899999999999998874 3222 4667665554
Q ss_pred CCEEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1025 ENLKVYLKVEVDIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1025 ~~~~v~l~l~vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
.++.|+|.+.++.+-+.+-+. ..+...+|.+++.++-
T Consensus 876 ~~~~v~ld~~~~~~l~~eg~~---re~~~~iq~~rk~~~~ 912 (975)
T PRK06039 876 GGGTVALDTELTEELEAEGLA---RELIRRIQEMRKEAGL 912 (975)
T ss_pred CCEEEEEECCcCHHHHHhhHH---HHHHHHHHHHHHhCCC
Confidence 588999988877777766776 4566788888887764
No 11
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.7e-168 Score=1600.57 Aligned_cols=789 Identities=24% Similarity=0.392 Sum_probs=691.9
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 142 KEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 142 ~~y~p~~iE~~~~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
+.|||..+|.+|+++|+++++|++..+ .++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD 85 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWD 85 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccC
Confidence 569999999999999999999998653 467889999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||+|||.+||++++.+.+....++|+++|+++|++|+.+|.+.+++|+++||+|+||+++|+||||.|+++|+|+|.+|
T Consensus 86 ~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l 165 (1159)
T PLN02882 86 CHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQL 165 (1159)
T ss_pred CCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999876221112233599999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCcccccccc--cccccCcceEEeecCcccccccceEeeEeeecCCCc--ceEEEeeccccc
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVVATTRVET 375 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EV--e~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~--~~l~vaTTrPeT 375 (1104)
|++|||||+.++|+|||.|+|+|||+|| +|+++.++ .++++||+.++. .+++||||||||
T Consensus 166 ~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~----------------si~v~F~l~~~~~~~~l~iwTTtPwT 229 (1159)
T PLN02882 166 FEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDP----------------AVMVSFPIVGDPDNASFVAWTTTPWT 229 (1159)
T ss_pred HHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCc----------------EEEEEEEecCCCCCcEEEEEeCCccc
Confidence 9999999999999999999999999888 78888765 457899987643 699999999999
Q ss_pred cccCceEEecCCcc------------------ccc-------------------------------cccCcEeecCCC--
Q 001303 376 MLGDTAIAIHPEDA------------------RYS-------------------------------HLHGKFAIHPFN-- 404 (1104)
Q Consensus 376 l~g~~aiaV~P~d~------------------ry~-------------------------------~l~G~~~~~P~~-- 404 (1104)
||||+||||||+++ ||. +|+|++|.+||.
T Consensus 230 Lpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~ 309 (1159)
T PLN02882 230 LPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYF 309 (1159)
T ss_pred cccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCcccc
Confidence 99999999999976 221 688999988872
Q ss_pred ----CCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ccceecCCCCccccCCCCCCCCCchhhHHH
Q 001303 405 ----GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKARE 475 (1104)
Q Consensus 405 ----~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~ 475 (1104)
++.+|||+|++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++| +|.|+.+++||+
T Consensus 310 ~~~~~~~~~Vi~~~~-V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~eA~~ 387 (1159)
T PLN02882 310 SEFSDTAFRVVADDY-VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVT-DFSGRYVKDADK 387 (1159)
T ss_pred ccccCceEEEEccCc-cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCc-ccCCCCHHHhhH
Confidence 46899999996 99999999999999999999999999999 79999999999999998 999999999999
Q ss_pred HHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEecccc-HHHHHHHhc
Q 001303 476 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWLE 554 (1104)
Q Consensus 476 ~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~-~~~~~~wl~ 554 (1104)
.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++.++++++++. ++++|+|+++ +++|.+||+
T Consensus 388 ~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~-----~~i~w~P~~~~~~r~~~wl~ 462 (1159)
T PLN02882 388 DIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN-----KQTYWVPDYVKEKRFHNWLE 462 (1159)
T ss_pred HHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh-----CCcEEECCcchhhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999977 7899999999 589999999
Q ss_pred cCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhh-------------hcCC----CCccc
Q 001303 555 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANK-------------KFSG----KKFEM 617 (1104)
Q Consensus 555 ~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------------~~~~----~~~~l 617 (1104)
|++|||||||||||||||+|+|..+. .+++..+.++....... .+|. ....+
T Consensus 463 ~~~DW~ISRqR~WGtPIPvw~~~~~~-----------~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~ 531 (1159)
T PLN02882 463 NARDWAVSRSRFWGTPLPIWISDDGE-----------EVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVL 531 (1159)
T ss_pred cCcccceeeccccCCccceEEeCCCC-----------eEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhce
Confidence 99999999999999999999996542 24443444433322110 0121 12369
Q ss_pred ccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCC
Q 001303 618 CQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 696 (1104)
Q Consensus 618 ~~d~dvlDtWFdS~l~p~s~~g~p~~-~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~ 696 (1104)
+|++||||||||||++|++++|||.+ .++|..+||+|++++|+||+||||++|+++|++++|+.||++|++||||+|++
T Consensus 532 ~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~ 611 (1159)
T PLN02882 532 RRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAED 611 (1159)
T ss_pred EecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCC
Confidence 99999999999999999999999975 56788999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-ccccccc
Q 001303 697 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINL 775 (1104)
Q Consensus 697 G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~-~~~di~f 775 (1104)
|+|||||+||||||.++|+ +||||+|||||++... .++|++|
T Consensus 612 G~KMSKSlGNvIdP~evi~-------------------------------------~YGADaLR~~Ll~s~~~~~~d~~f 654 (1159)
T PLN02882 612 GKKMSKSLKNYPDPNEVID-------------------------------------KYGADALRLYLINSPVVRAEPLRF 654 (1159)
T ss_pred CCCcccCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhCCcccCcCccc
Confidence 9999999999999999999 8999999999997544 3788999
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHhhhhCC-------CCCCCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 001303 776 DIQRVVGY-RQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHP-HNLPFSCKWILSVLNKAISRTASSLNSYEFSDA 846 (1104)
Q Consensus 776 ~~~~i~~~-r~f~nKl~N~~rf~l~~~~~-------~~~p~~~~~~-~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a 846 (1104)
+.+.+.+. +++++++||+++|+++++.+ +|.|...... .....+|+||+++++++++.+.++|++|+|+.|
T Consensus 655 s~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A 734 (1159)
T PLN02882 655 KEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTV 734 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 99998765 67999999999999887642 3444311111 124678999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHhhcccccCCC-cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCC
Q 001303 847 ASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKES 925 (1104)
Q Consensus 847 ~~~i~~f~~~~~~n~Yie~~K~~l~~~~-~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~S 925 (1104)
++.|++|+ .++|||||+.+|||++.++ .. .+++++.||+.+|..+++||||||||+||+||++|+.... ...+|
T Consensus 735 ~~~I~~Fv-~~lsN~YIe~~Kprl~~~~~~~---~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~-~~~~S 809 (1159)
T PLN02882 735 VPYLVKFI-DNLTNIYVRFNRKRLKGRTGEE---DCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLP-GSEES 809 (1159)
T ss_pred HHHHHHHH-HHHhHHHHHhCCHhhhCCCChH---HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccC-CCCCc
Confidence 99999998 4799999999999988652 32 5778899999999999999999999999999999975211 12479
Q ss_pred cccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCccc--EE-EEecChhHHH-HHHHHHHHHHhhhcc
Q 001303 926 IMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP--AI-AFCQTKGVSE-IIRSHELEIVTLSTS 1001 (1104)
Q Consensus 926 I~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~--~~-I~~~~~~~~~-~l~~~~~~I~~L~~v 1001 (1104)
||++.||++++.++|++++..|+.+++++..+|++|++. +++.+.+ .. +...+.+... ++..+.++|+.++|+
T Consensus 810 Vh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~---~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv 886 (1159)
T PLN02882 810 IHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERH---NKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEELNV 886 (1159)
T ss_pred eeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccceeeEecCCHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999989999999999999999999999999998 7644443 33 3233333333 347889999999999
Q ss_pred ceEEEecc
Q 001303 1002 SSLKVLLS 1009 (1104)
Q Consensus 1002 ~~v~i~~~ 1009 (1104)
.+|.+..+
T Consensus 887 ~~v~~~~~ 894 (1159)
T PLN02882 887 RSLVPCND 894 (1159)
T ss_pred ceEEEeec
Confidence 99988644
No 12
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-167 Score=1578.81 Aligned_cols=786 Identities=28% Similarity=0.449 Sum_probs=700.7
Q ss_pred cccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCcchhHHhHHHH
Q 001303 122 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 199 (1104)
Q Consensus 122 ~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 199 (1104)
++++|+|.|++|. |+..+|++|+++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|
T Consensus 7 tl~lp~t~f~m~~----------~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~D 76 (912)
T PRK05743 7 TLNLPKTDFPMRA----------NLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKD 76 (912)
T ss_pred hcCCCCCCCCCCC----------ChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 7899999999884 45579999999999999999753 35678999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001303 200 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 279 (1104)
Q Consensus 200 ~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r 279 (1104)
+++||+||+||+|+|+|||||||+|||.+||+++ |..++++++++|++.|++|++++++.|++||++||+++||++
T Consensus 77 ii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l----~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 77 IIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHccCCcccCCCCcCCCccHhHHHHHHHc----CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 9999999999999999999999999999999875 566788999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeec
Q 001303 280 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 359 (1104)
Q Consensus 280 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l 359 (1104)
+|+||||.|+++|+++|.+|+++|||||+.++|+|||.|+|+|||+||+|++..+ ..++++|++
T Consensus 153 ~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s----------------~~~yv~f~l 216 (912)
T PRK05743 153 PYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTS----------------PSIYVAFPV 216 (912)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccC----------------ceEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999998664 346788888
Q ss_pred CCC-------cceEEEeeccccccccCceEEecCCcc---------cc---------------------------ccccC
Q 001303 360 EGG-------LGEIVVATTRVETMLGDTAIAIHPEDA---------RY---------------------------SHLHG 396 (1104)
Q Consensus 360 ~~~-------~~~l~vaTTrPeTl~g~~aiaV~P~d~---------ry---------------------------~~l~G 396 (1104)
.++ +.+|+|||||||||+||+||||||+++ +| ++|+|
T Consensus 217 ~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g 296 (912)
T PRK05743 217 VDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEG 296 (912)
T ss_pred cCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcC
Confidence 653 368999999999999999999999984 67 47899
Q ss_pred cEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHH
Q 001303 397 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREA 476 (1104)
Q Consensus 397 ~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~ 476 (1104)
+++.||+.++.+|||.+++ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+.+++||++
T Consensus 297 ~~~~~Pl~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~-~~~Gl~v~ea~~~ 374 (912)
T PRK05743 297 LVAQHPFYDRDSPVILGDH-VTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAP-LFAGLFVFKANPK 374 (912)
T ss_pred CEEECCCCCCeeeEeCCCc-cCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCc-ccCCcCHHHhHHH
Confidence 9999999999999999996 9999999999999999999999999999999999999999999888 9999999999999
Q ss_pred HHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccch--HHHHHHHhhhccCCCceEEeccccHHHHHHHhc
Q 001303 477 VNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 554 (1104)
Q Consensus 477 vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~--~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~ 554 (1104)
|++.|++.|++++.+++.|+||+|||||++|++++++|||+++++ +++++++++ ++++|+|+++++++.+||+
T Consensus 375 Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~-----~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 375 IIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI-----EKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH-----cccEEEChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 999999999 5799999999999999999
Q ss_pred cCCCeeeeccCCCcccceEEEEccCcchhhc-c----------CCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCc
Q 001303 555 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-L----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDV 623 (1104)
Q Consensus 555 ~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dv 623 (1104)
+++|||||||||||||||+|||..|++.... . ....+.|+... +...+|.+...+.|++||
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~--------~~~~~~~~~~~~~~~~Dv 521 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD--------AKELLPDEADEYEKETDI 521 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC--------HHHhcCCcccCEEECCch
Confidence 9999999999999999999999876532100 0 01122444221 111244334468999999
Q ss_pred eeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccccc
Q 001303 624 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 703 (1104)
Q Consensus 624 lDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 703 (1104)
||||||||++|++.+++- . +.+||+|++++|+||+||||++|++.++.++|..||++|++||||+|.+|+|||||
T Consensus 522 lDvWfdSg~s~~~~~~~~---~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKS 596 (912)
T PRK05743 522 LDVWFDSGSSHAAVLEQR---P--ELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKS 596 (912)
T ss_pred hhhhhhhCCCHHHHhcCc---c--ccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCC
Confidence 999999999999988751 2 26899999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH
Q 001303 704 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 783 (1104)
Q Consensus 704 ~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~ 783 (1104)
+||||||.++|+ +||||+||||+++ ++.++|++|+.+.+.+.
T Consensus 597 lGNvIdP~~ii~-------------------------------------~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~ 638 (912)
T PRK05743 597 LGNVIDPQDVIK-------------------------------------KYGADILRLWVAS-TDYSGDVRISDEILKQV 638 (912)
T ss_pred CCCcCCHHHHHH-------------------------------------hcChHHHHHHHHh-cCCCCCeeecHHHHHHH
Confidence 999999999998 8999999999997 77899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHH
Q 001303 784 RQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 862 (1104)
Q Consensus 784 r~f~nKl~N~~rf~l~~~~~~~~p~~~-~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Y 862 (1104)
+++++||||++||+++++.+ +.|... ++...+...|+||+++|+++++.++++|++|+|+.|++.|++|+++++||+|
T Consensus 639 ~~~~~kl~N~~rf~~~nl~~-~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 639 AEAYRRIRNTLRFLLGNLND-FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred HHHHHHHHHHHHHHHhCccC-CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 99999999999999988764 544221 1122457889999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCc
Q 001303 863 IEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTD 940 (1104)
Q Consensus 863 ie~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d 940 (1104)
++.+|++++.. +.. .+++++.+|+.+++.+++||||||||+|||||++|+.. ..+||+.+.||.+++.+.|
T Consensus 718 ie~~K~rly~~~~~~~---~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~----~~~sv~~~~wP~~~~~~~~ 790 (912)
T PRK05743 718 LDIIKDRLYTDAADSL---ARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE----REESVFLEEWPEVPELADD 790 (912)
T ss_pred heeccHhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC----CCCceEEecCCCCccccCC
Confidence 99999998765 222 56788999999999999999999999999999999731 2369999999999988889
Q ss_pred HHhHHHhHHHHH----HHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEec
Q 001303 941 ERAEFEMDLVES----TVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLL 1008 (1104)
Q Consensus 941 ~~~e~~~e~i~~----ii~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1008 (1104)
+.++..++.+++ +++.+|..|++. .|+...++.+.+.... +.+..+.+.|..++++++|++..
T Consensus 791 ~~~~~~~~~~~~~r~~v~~~i~~~r~~~---~i~~~~~~~~~~~~~~--~~l~~~~~~l~~~~~vs~v~~~~ 857 (912)
T PRK05743 791 EELLAKWEELLEVRDEVNKALEEARKEK---VIGSSLEAEVTLYADA--ALLESLGDELRFLLIVSQVEVAD 857 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCcccceEEEEEcCH--HHHHHHHHHHHHHhhhCceEEec
Confidence 999999999985 777888888876 7866555544333222 67888888899999999999863
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-166 Score=1570.81 Aligned_cols=788 Identities=25% Similarity=0.406 Sum_probs=694.2
Q ss_pred cccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHhHHHH
Q 001303 122 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 199 (1104)
Q Consensus 122 ~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 199 (1104)
++++|+|.|++|.|+ ..+|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|
T Consensus 12 tl~lp~t~f~m~~~~----------~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkD 81 (961)
T PRK13804 12 TLNLPQTAFPMRAGL----------PQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKD 81 (961)
T ss_pred hcCCCCCCCCCCCCh----------HHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 789999999998554 4799999999999999998653 4678999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001303 200 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 279 (1104)
Q Consensus 200 ~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r 279 (1104)
+++||+||+||+|+|+|||||||||||.+||+++ ...|+.++++++++|+++|++|+.++++.|++||++||+++||+|
T Consensus 82 ii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~-~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~ 160 (961)
T PRK13804 82 VIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY-RAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN 160 (961)
T ss_pred HHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh-hhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC
Confidence 9999999999999999999999999999999887 445778889999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeec
Q 001303 280 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 359 (1104)
Q Consensus 280 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l 359 (1104)
+|+||||.|+++++|+|.+|+++|||||+.+||+|||.|+|+|||+||+|++..+. .++++|++
T Consensus 161 ~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~----------------~~~v~F~~ 224 (961)
T PRK13804 161 PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESD----------------TIWVKFPV 224 (961)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCc----------------eEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999987653 45788888
Q ss_pred CCC------cceEEEeeccccccccCceEEecCCcc-------------------c-------------------cc---
Q 001303 360 EGG------LGEIVVATTRVETMLGDTAIAIHPEDA-------------------R-------------------YS--- 392 (1104)
Q Consensus 360 ~~~------~~~l~vaTTrPeTl~g~~aiaV~P~d~-------------------r-------------------y~--- 392 (1104)
.++ +.+++|||||||||+||+||||||+++ + |+
T Consensus 225 ~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~ 304 (961)
T PRK13804 225 KDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLA 304 (961)
T ss_pred cCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEE
Confidence 542 368999999999999999999999972 4 33
Q ss_pred -----cccCcEeecCCCCC-----ceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-ccceecCCCCccccCC
Q 001303 393 -----HLHGKFAIHPFNGR-----KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-EFINIFTDDGKINSNG 461 (1104)
Q Consensus 393 -----~l~G~~~~~P~~~~-----~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-~~~~iid~~G~~~~~~ 461 (1104)
+|+|+++.|||.++ .+|||.+++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++
T Consensus 305 ~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~ 383 (961)
T PRK13804 305 DVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDH-VTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENA 383 (961)
T ss_pred EEEhhhccCCEEECCCCCcccccceeEEEecCc-cCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCC
Confidence 79999999999999 899999996 99999999999999999999999999999 9999999999999988
Q ss_pred CCC--------CCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccch-------HHHHH
Q 001303 462 GLE--------FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS-------MAMEA 526 (1104)
Q Consensus 462 g~~--------~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~-------~~~~~ 526 (1104)
| . |.|+.+++||+.|++.|++.|++++.+++.|+||+|||||+||++++++||||+|++ +++++
T Consensus 384 ~-~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~a 462 (961)
T PRK13804 384 P-GFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRA 462 (961)
T ss_pred C-ccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHH
Confidence 7 5 899999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhcc-----------CCCCCceEE
Q 001303 527 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKEL-----------GSYNDHWIV 595 (1104)
Q Consensus 527 ~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~-----------~~~~~~~~~ 595 (1104)
++++ ++++|+|+++++++.+||++++|||||||||||||||+|||.. ++.+.+. ..+.+.|+.
T Consensus 463 l~~i-----~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 463 LDAI-----DKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAED-GEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHHH-----hccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCC-CCEeccHHHHHHHHHHHHhcCCccccc
Confidence 9999 6899999999999999999999999999999999999999953 2211100 011234431
Q ss_pred ecCHHHHHHHHhhhcCC---CCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHH
Q 001303 596 ARDEKEALAVANKKFSG---KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVM 672 (1104)
Q Consensus 596 ~~~~~e~~~~~~~~~~~---~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~ 672 (1104)
. ... ..+|. +...++|++||||||||||+++...+++ +.++ +||+|++++|+||+||||+++++
T Consensus 537 ~-~~~-------~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~---~~~~--~~PaD~~~eG~Di~rgWF~s~ll 603 (961)
T PRK13804 537 E-GAK-------ERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLED---RPDL--KWPADLYLEGSDQHRGWFNSSLL 603 (961)
T ss_pred c-CHH-------HhcCcccCcccceEecCcceeeeecCCCCccccccC---Cccc--CCCceEEEEEcccccHHHHHHHH
Confidence 1 111 11221 2346999999999999999987665543 2334 58999999999999999999999
Q ss_pred HHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001303 673 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 752 (1104)
Q Consensus 673 ~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~ 752 (1104)
+++.++|..||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 604 ~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~------------------------------------- 646 (961)
T PRK13804 604 ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK------------------------------------- 646 (961)
T ss_pred HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAI 831 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~-~~~~~~~~~D~wils~L~~~v 831 (1104)
+||+|+||||+++ +..++|++|+.+.+...++++++|||++||+++++.+ |.+... .....+...|+||+++|++++
T Consensus 647 ~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~-~~~~~~~~~~~~~~~~D~wil~~l~~~~ 724 (961)
T PRK13804 647 QSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAH-FDPGEDVVAYADLPELERYMLHRLNELD 724 (961)
T ss_pred hcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccccCChhhcCHHHHHHHHHHHHHH
Confidence 8999999999997 5788999999999999999999999999999988764 554321 122346778999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 001303 832 SRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEE 909 (1104)
Q Consensus 832 ~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEe 909 (1104)
+.+.++|++|+|+.|++++++|+++++||+|++.+|||++.+ ++. .+++++.+|+.+++.+++||||||||+|||
T Consensus 725 ~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~---~r~~~~~vL~~il~~l~~lLaPi~P~~aEe 801 (961)
T PRK13804 725 GLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSL---RRRAAQTVFYEIFVRLTKWLAPILPFTAEE 801 (961)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999999999999999998865 232 567889999999999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHH----HHHHHHHHHHHhhccCCCCcccE--EEEecChh
Q 001303 910 LWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES----TVRCIRSLRAEVLGKQKNERLPA--IAFCQTKG 983 (1104)
Q Consensus 910 Lwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~----ii~~iRslr~~~~~k~i~~~~~~--~I~~~~~~ 983 (1104)
||++|+.. ..+||+++.||.+++.+.|++++..++.++. +..++|++|++. .|+.+.++ .|.+.+..
T Consensus 802 iw~~L~~~----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~---~i~~~~e~~v~l~~~~~~ 874 (961)
T PRK13804 802 AWLYRYPE----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAK---RIGSSLEAAPTVYIADPE 874 (961)
T ss_pred HHHhcccC----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCcceeEEEEcCCHH
Confidence 99999841 2369999999999888889888888766666 457889999987 78655554 44434434
Q ss_pred HHHHHHHHHHHHHhhhccceEEEec
Q 001303 984 VSEIIRSHELEIVTLSTSSSLKVLL 1008 (1104)
Q Consensus 984 ~~~~l~~~~~~I~~L~~v~~v~i~~ 1008 (1104)
..+.+..+ .|+.|++++++++..
T Consensus 875 ~~~~l~~~--~l~~~~~vs~~~~~~ 897 (961)
T PRK13804 875 LLAALEGL--DFAEICITSQLTVAA 897 (961)
T ss_pred HHHHHHHH--HHHHHhhhCceEEec
Confidence 44566665 489999999999864
No 14
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=9.4e-166 Score=1565.56 Aligned_cols=796 Identities=25% Similarity=0.397 Sum_probs=683.9
Q ss_pred CchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCC
Q 001303 145 NPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 223 (1104)
Q Consensus 145 ~p~~iE~~~~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Gl 223 (1104)
+...+|++|+++|+++++|++..+ ..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||||||
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 344799999999999999998654 3456799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcC
Q 001303 224 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 303 (1104)
Q Consensus 224 p~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~G 303 (1104)
|||.+||+++.. .+++++++++|+++|++|+.++++.|++||++||+++||+++|+||||.|+++|+++|.+|+++|
T Consensus 84 pie~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 84 PIELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred HHHHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999988732 25678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccEeeeecCCCCccccccccccccc-CcceEEeecCcccccccceEeeEeeecCCC-------------cceEEEe
Q 001303 304 LIYRDLRLVNWDCVLRTAISDIEVDYVDI-PKREMRNVPGYEKQVEFGVLTSFAYPLEGG-------------LGEIVVA 369 (1104)
Q Consensus 304 lIyr~~~~v~wcp~~~TaLsd~EVe~~~~-~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~-------------~~~l~va 369 (1104)
||||+.+||+|||+|+|+|||+||+|++. .+ ..++++|++.++ +.+|+||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~----------------~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviw 224 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVS----------------KSIYVAFPVVSPSETSPEELEEFLPGLSLAIW 224 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccC----------------ceEEEEEEecCCccccccccccccccceEEEE
Confidence 99999999999999999999999999863 33 345677777543 2489999
Q ss_pred eccccccccCceEEecCCcc-------------c----------------------------------------------
Q 001303 370 TTRVETMLGDTAIAIHPEDA-------------R---------------------------------------------- 390 (1104)
Q Consensus 370 TTrPeTl~g~~aiaV~P~d~-------------r---------------------------------------------- 390 (1104)
||||||||||+||||||+++ |
T Consensus 225 TTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~ 304 (974)
T PLN02843 225 TTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTF 304 (974)
T ss_pred eCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeee
Confidence 99999999999999999954 2
Q ss_pred -cccccCcEeecCCCCCceeEEe-cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCC
Q 001303 391 -YSHLHGKFAIHPFNGRKIPIIC-DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGM 468 (1104)
Q Consensus 391 -y~~l~G~~~~~P~~~~~ipIi~-d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl 468 (1104)
+++|+|+++.|||.++.+|||. ++ ||++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+
T Consensus 305 ~g~~L~g~~~~~P~~~~~~pii~~~~-~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~ 382 (974)
T PLN02843 305 PGSDLEGCRYIHPLYNRESPVVIGGD-YITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG-QFSGL 382 (974)
T ss_pred chHHcCCCEEECCCCCCceeEEecCC-ccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc-ccCCc
Confidence 2689999999999999999986 67 59999999999999999999999999999999999999999999988 89999
Q ss_pred chh-hHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHH
Q 001303 469 PRF-KAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA 547 (1104)
Q Consensus 469 ~~~-~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~ 547 (1104)
.++ +||+.|++.|++.|++++.+++.|+||||||||+||++++++||||+++.+++++++++ ++|+|+|+.+++
T Consensus 383 ~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~-----~~v~~~P~~~~~ 457 (974)
T PLN02843 383 SVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI-----DKVKWIPAQGEN 457 (974)
T ss_pred EehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH-----hccEEEChHHHH
Confidence 998 89999999999999999999999999999999999999999999999999999999999 579999999999
Q ss_pred HHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhcc-----------CCCCCceEEecCHHHHHHHHhhhcCCCCcc
Q 001303 548 EWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKEL-----------GSYNDHWIVARDEKEALAVANKKFSGKKFE 616 (1104)
Q Consensus 548 ~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 616 (1104)
++.+||++++|||||||||||||||+|||..|++.+... ....+.|+.. +.++.. ...+.++...
T Consensus 458 r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~-~~~~l~---p~~~~~~~~~ 533 (974)
T PLN02843 458 RIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYM-DVEDLL---PEKYRDKASD 533 (974)
T ss_pred HHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccC-CHHHhC---cccccCchhh
Confidence 999999999999999999999999999998775431100 0122344432 222221 1111122346
Q ss_pred cccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCC
Q 001303 617 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 696 (1104)
Q Consensus 617 l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~ 696 (1104)
++|++||||||||||+++...+++. .+.+||+|++++|+||+||||++|+++++.++|+.||++|++||+|+|.+
T Consensus 534 ~~k~~DvlDvWFdSg~~~~~~~~~~-----~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~ 608 (974)
T PLN02843 534 YEKGTDTMDVWFDSGSSWAGVLGSR-----EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEK 608 (974)
T ss_pred hEecccccccchhcCCChHHHhccc-----cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCC
Confidence 8999999999999999877666532 13479999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccc
Q 001303 697 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 776 (1104)
Q Consensus 697 G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~ 776 (1104)
|+|||||+||||+|.++|+|+++ .+++|+||+|+||||+++ +..+.|++|+
T Consensus 609 G~KMSKSlGNvI~p~~vi~~~~~----------------------------~~~~~~yGaD~lR~~l~~-~~~~~d~~~s 659 (974)
T PLN02843 609 GFKMSKSLGNVVDPRLVIEGGKN----------------------------QKQEPAYGADVLRLWVAS-VDYTGDVLIG 659 (974)
T ss_pred CCCcCCCCCCcCCHHHHHhhccc----------------------------cccccccChHHHHHHHHh-cccCCCceeC
Confidence 99999999999999999996532 246789999999999997 5567899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001303 777 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 856 (1104)
Q Consensus 777 ~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~ 856 (1104)
.+.+.+.+++++||||++||+++++.+ |.|........+..+|+||+++|+++++.+.++|++|+|+.|+++|++|++.
T Consensus 660 ~~~l~~~~~~~~kl~n~~rf~lgnl~~-~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~ 738 (974)
T PLN02843 660 PQILKQMSDIYRKLRGTLRYLLGNLHD-WKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIV 738 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccC-CCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999998864 6542222223456789999999999999999999999999999999999999
Q ss_pred hHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCC
Q 001303 857 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 936 (1104)
Q Consensus 857 ~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e 936 (1104)
++||+||+.+|||++.+... ...|++++.+|+.+++.+++||||||||+|||||++|+...+....+||+++.||.+++
T Consensus 739 dlsn~Yie~~Kprly~~~~~-~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~ 817 (974)
T PLN02843 739 DLSNFYLDVAKDRLYVGGTT-SFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNE 817 (974)
T ss_pred HHhHHHHHhcchhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCch
Confidence 99999999999998765211 11577889999999999999999999999999999997531101246999999999887
Q ss_pred CCCc--HHhHH----HhHHHHHHHHHHHHHHHHhhccCCCCccc--EEEEecChhHHHHHHH------HHHHHHhhhccc
Q 001303 937 GWTD--ERAEF----EMDLVESTVRCIRSLRAEVLGKQKNERLP--AIAFCQTKGVSEIIRS------HELEIVTLSTSS 1002 (1104)
Q Consensus 937 ~~~d--~~~e~----~~e~i~~ii~~iRslr~~~~~k~i~~~~~--~~I~~~~~~~~~~l~~------~~~~I~~L~~v~ 1002 (1104)
.+.| +..+. .+++..++++++|++|++. .|+.+.+ +.|.+.+.+..+.++. +.+.|+.|++++
T Consensus 818 ~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~---~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs 894 (974)
T PLN02843 818 EWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGK---LIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITS 894 (974)
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccC
Confidence 7765 33434 3445555788999999987 7855444 5555444445566766 347799999999
Q ss_pred eEEEecc
Q 001303 1003 SLKVLLS 1009 (1104)
Q Consensus 1003 ~v~i~~~ 1009 (1104)
+|++...
T Consensus 895 ~v~~~~~ 901 (974)
T PLN02843 895 QVEVVSS 901 (974)
T ss_pred ceEeecC
Confidence 9998743
No 15
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-165 Score=1552.87 Aligned_cols=782 Identities=32% Similarity=0.568 Sum_probs=703.7
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 139 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 139 ~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
.+++.|||+++|++||++|+++++|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~ 84 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGW 84 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCc
Confidence 46678999999999999999999999987656789999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001303 219 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 298 (1104)
Q Consensus 219 D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 298 (1104)
||||+|||.+||+++ |++++++|+++|++.|++|++++++.|++||++||+|+||+|+++||||.|+++|+|+|.+
T Consensus 85 D~~Glpie~~~ek~~----g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~ 160 (800)
T PRK13208 85 DDNGLPTERKVEKYY----GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLD 160 (800)
T ss_pred CCCcchHHHHHHHHh----CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHH
Confidence 999999999998754 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeecccccccc
Q 001303 299 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 378 (1104)
Q Consensus 299 L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g 378 (1104)
|+++|||||+.++|+|||.|+|+|||+||+|++.. |.+++++|++.+ +.+|+|||||||||+|
T Consensus 161 L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~----------------~~~~~ikf~~~~-~~~l~v~TtrPeTl~g 223 (800)
T PRK13208 161 LYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE----------------GKLNYIKFPVED-GEEIEIATTRPELLPA 223 (800)
T ss_pred HHHCCCeeecCcccccCCCCCCccchhhhcccccc----------------ceEEEEEEEecC-CCEEEEEeCCcchhhh
Confidence 99999999999999999999999999999988765 456789999975 4689999999999999
Q ss_pred CceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccc
Q 001303 379 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 458 (1104)
Q Consensus 379 ~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~ 458 (1104)
|+||||||+|+||++|+|+++.||++++++|||++++ |++++|||+||+||+||++||++|++|||+++++||++|+|+
T Consensus 224 ~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~ 302 (800)
T PRK13208 224 CVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPL-VDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMT 302 (800)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCc-cCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEe
Confidence 9999999999999999999999999999999999996 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCce
Q 001303 459 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 538 (1104)
Q Consensus 459 ~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i 538 (1104)
+++| .|+||++++||++|++.|+++|++.+.+++.|++|+|||||++|++++++||||+++++++++++++ +++
T Consensus 303 ~~~g-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~-----~~~ 376 (800)
T PRK13208 303 EAAG-KLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG-----KEI 376 (800)
T ss_pred cCCc-ccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh-----cCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 568
Q ss_pred EEeccccHHHHHHHhccCC-CeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCC-cc
Q 001303 539 ELIPRQYTAEWRRWLEAIR-DWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 616 (1104)
Q Consensus 539 ~~~P~~~~~~~~~wl~~l~-DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~ 616 (1104)
+|+|+++++++.+||++++ |||||||||||||||+|||..|+.... .. ..|..-....++.. ...|+.++ ..
T Consensus 377 ~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~---~~-~~~l~~~~~~d~~~--~~~~~~~g~~~ 450 (800)
T PRK13208 377 NWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPIL---PD-EEDLPVDPTKDEPP--GYKCPQCGSPG 450 (800)
T ss_pred EEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeec---Cc-hhhhccCchhhccc--cccccccCCcC
Confidence 9999999999999999988 999999999999999999987742100 00 01110000001100 01222221 35
Q ss_pred cccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCC
Q 001303 617 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 696 (1104)
Q Consensus 617 l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~ 696 (1104)
++|++|||||||||+++|++++|||.++.+|++|||+|++++|+||++||+++|++++..++|..||++|++||+|+|.+
T Consensus 451 ~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~ 530 (800)
T PRK13208 451 FEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPD 530 (800)
T ss_pred EEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCC
Confidence 88999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccc
Q 001303 697 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 776 (1104)
Q Consensus 697 G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~ 776 (1104)
|+|||||+||+|+|.++++ +||+|++||||+ .++.++|++|+
T Consensus 531 G~KMSKS~GN~i~p~~~i~-------------------------------------~yg~D~lR~~l~-~~~~~~d~~fs 572 (800)
T PRK13208 531 GKKMSKSKGNVVTPEELLE-------------------------------------KYGADAVRYWAA-SARLGSDTPFD 572 (800)
T ss_pred CCCCCCCCCCCCCHHHHHH-------------------------------------HcCccHHHHHHh-cCCCCCCceec
Confidence 9999999999999999998 899999999999 78889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001303 777 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 856 (1104)
Q Consensus 777 ~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~ 856 (1104)
.+.+.++++|++||||+++|+.. +.+...+ .........|+||+++|+.+++.+.++|++|+|+.|++.|++|+++
T Consensus 573 ~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~---~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~ 648 (800)
T PRK13208 573 EKQVKIGRRLLTKLWNASRFVLH-FSADPEP---DKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWH 648 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccc---CccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999873 3211101 0112456789999999999999999999999999999999999988
Q ss_pred hHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCC
Q 001303 857 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 936 (1104)
Q Consensus 857 ~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e 936 (1104)
++||+||+.+|++++.++.. ..++.++.+|+.+++.+++||||||||+|||||+.|+. +||+.++||++++
T Consensus 649 ~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~~-------~si~~~~wP~~~~ 719 (800)
T PRK13208 649 VFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYG-------GSVHRASWPEPDE 719 (800)
T ss_pred HhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCCC-------CceEeccCCCCCc
Confidence 99999999999998755322 12567889999999999999999999999999999971 5899999999988
Q ss_pred CCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcccE--EEEecChhHHHHHHHHHHHHHhhhccceEEEecc
Q 001303 937 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPA--IAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLS 1009 (1104)
Q Consensus 937 ~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~~--~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~ 1009 (1104)
.+.++.++..++.++++++++|++|+++ +++.+.++ .+...+.+ .+.++.+.+.|+.++++++|.+...
T Consensus 720 ~~~~~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~ 790 (800)
T PRK13208 720 ELIDEEDEELGELAKEILSAVRKYKSEA---GLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEG 790 (800)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecC
Confidence 8888899999999999999999999999 88555544 33334444 7788999999999999999998754
No 16
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-163 Score=1484.66 Aligned_cols=756 Identities=30% Similarity=0.505 Sum_probs=671.8
Q ss_pred cccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC---CCCCCcEEEECCCCCCCCCCCcchhHHhHHH
Q 001303 122 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN---KSSKPSFVIVLPPPNVTGALHIGHALTTAIQ 198 (1104)
Q Consensus 122 ~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~---~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~ 198 (1104)
++++|+|.|++|.|+. .+|++++++|+++++|+... ++++++|++++||||+||.+|||||+|.+++
T Consensus 6 tl~lp~T~fpmr~~l~----------~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilK 75 (933)
T COG0060 6 TLNLPKTDFPMRANLP----------KKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILK 75 (933)
T ss_pred cccCccCCCCccCChh----------hcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhh
Confidence 3899999999997764 69999999999999999765 3678999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 001303 199 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 278 (1104)
Q Consensus 199 D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~ 278 (1104)
|++.||+.|+||+|.++|||||||||||..||++++. .+....++|.++|+++|++++.++.+.++++|+|||++.||+
T Consensus 76 DiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~ 154 (933)
T COG0060 76 DIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWE 154 (933)
T ss_pred hhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccC
Confidence 9999999999999999999999999999999998854 444556799999999999999999999999999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeee
Q 001303 279 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP 358 (1104)
Q Consensus 279 r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~ 358 (1104)
++|.|||+.|.+.++++|.+|+++||||||.+||+|||+|+|+||++||+|.++.++++ +++||
T Consensus 155 npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSI----------------yV~F~ 218 (933)
T COG0060 155 NPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSI----------------YVKFP 218 (933)
T ss_pred CCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceE----------------EEEEE
Confidence 99999999999999999999999999999999999999999999999999999888764 67888
Q ss_pred cCC----CcceEEEeeccccccccCceEEecCCccc----------------------------c--------ccccCcE
Q 001303 359 LEG----GLGEIVVATTRVETMLGDTAIAIHPEDAR----------------------------Y--------SHLHGKF 398 (1104)
Q Consensus 359 l~~----~~~~l~vaTTrPeTl~g~~aiaV~P~d~r----------------------------y--------~~l~G~~ 398 (1104)
+.+ .+.+|+||||||||||+|.||||||+-+. | ++|.|..
T Consensus 219 v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~ 298 (933)
T COG0060 219 VKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLR 298 (933)
T ss_pred eccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCE
Confidence 864 46899999999999999999999999641 1 3688999
Q ss_pred eecCCCC----CceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhC-CccceecCCCCccccCCCCCCCCCchhhH
Q 001303 399 AIHPFNG----RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN-LEFINIFTDDGKINSNGGLEFEGMPRFKA 473 (1104)
Q Consensus 399 ~~~P~~~----~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~-L~~~~iid~~G~~~~~~g~~~~Gl~~~~a 473 (1104)
+.|||.+ +..||+.+++ |+.+-|||+||++||||++||.+|+++| |++++++|++|+++++++ .|.|+.+++|
T Consensus 299 y~hPf~~~~~~~~~~v~~gd~-VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~-~~~G~~v~dA 376 (933)
T COG0060 299 YEHPFYDFVYDRAFPVILGDH-VTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP-KYEGLFVKDA 376 (933)
T ss_pred eeCCcccccccceeeEEecCe-EecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch-hhCCceeccC
Confidence 9999985 9999999995 9999999999999999999999999999 799999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHh
Q 001303 474 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 553 (1104)
Q Consensus 474 r~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl 553 (1104)
++.|++.|+++|.|++.+.+.|+|||||||++||++|.++|||++++++++++++.+ .+++|+|++.++|+.+||
T Consensus 377 n~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i-----~~v~w~P~~~~~R~~~mv 451 (933)
T COG0060 377 NKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI-----NKVNWVPDWGKNRFGNMV 451 (933)
T ss_pred CHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH-----hcceEEChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 499999999999999999
Q ss_pred ccCCCeeeeccCCCcccceEEEEccCcchhh---ccC---------CCCCceEEecCHHHHHHHHhhhcCCCCcccccCC
Q 001303 554 EAIRDWCVSRQLWWGHQIPAWYVTLEDDELK---ELG---------SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDP 621 (1104)
Q Consensus 554 ~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~ 621 (1104)
+|.+||||||||+||+|||+|+|..|++... +.. ...+.|... ... ..-..|+.++..++|.+
T Consensus 452 e~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~-~id----el~~~~~~~g~~~~rv~ 526 (933)
T COG0060 452 ENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRP-DID----ELLPPCPEDGKEYRRVP 526 (933)
T ss_pred cCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhcc-chH----hhcCCCCCCcceeEecC
Confidence 9999999999999999999999987753211 000 000111100 000 00111223445899999
Q ss_pred CceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccc
Q 001303 622 DVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMS 701 (1104)
Q Consensus 622 dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMS 701 (1104)
||||||||||.+|.++++ |.+...|..++ +|++.+|+||+|+||.+++++|.+++|+.||++|++|||++|++|+|||
T Consensus 527 DvlDVWFDSGs~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMS 604 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMS 604 (933)
T ss_pred cceEEEEcCCCCcccccC-CcccccCcccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcc
Confidence 999999999999999998 76654443333 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHH
Q 001303 702 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVV 781 (1104)
Q Consensus 702 KS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~ 781 (1104)
||+||+|+|.+|++ +||||+||||+++.. .+.|+.|+.+.+.
T Consensus 605 KSlGN~v~P~~V~~-------------------------------------~yGADiLRLwv~ssd-~~~dl~~s~~il~ 646 (933)
T COG0060 605 KSLGNVVDPQDVID-------------------------------------KYGADILRLWVASSD-YWEDLRFSDEILK 646 (933)
T ss_pred ccCCCcCCHHHHHH-------------------------------------hhCchheeeeeeecC-chhccccCHHHHH
Confidence 99999999999999 999999999999866 8889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhH
Q 001303 782 GYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCD 860 (1104)
Q Consensus 782 ~~r~f~nKl~N~~rf~l~~~~~~~~p~~~-~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n 860 (1104)
..+..+++|||++||+++++. +|+|... +....+..+||||+++|+.+++.++++|++|+|+.+++.|++|+..++++
T Consensus 647 ~~~~~~r~irNt~rF~l~nl~-~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~ 725 (933)
T COG0060 647 QVREVYRKIRNTYRFLLGNLD-DFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSN 725 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999976 4888754 23346788999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCC
Q 001303 861 VFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 938 (1104)
Q Consensus 861 ~Yie~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~ 938 (1104)
|||+.+|++++.+ ++. +|+++++|||++|..++++|+||+||+||+|||.|+... ..+||+++.||.+.+.+
T Consensus 726 ~Yld~~kdr~y~~~~~s~---~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~---~~eSVhl~~~p~~~~~~ 799 (933)
T COG0060 726 WYLDIIKDRLYTEAADSP---DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER---KEESVHLEDWPEVDEEL 799 (933)
T ss_pred HHHHHHHHHhhhcCCCCH---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC---CCceeEeccCCcccccc
Confidence 9999999999866 333 899999999999999999999999999999999998742 25899999999988877
Q ss_pred C--cHHhHHHhHHHHHHHHHHHHHHHH
Q 001303 939 T--DERAEFEMDLVESTVRCIRSLRAE 963 (1104)
Q Consensus 939 ~--d~~~e~~~e~i~~ii~~iRslr~~ 963 (1104)
. +.......+..+++-..++.+...
T Consensus 800 ~~~~~~~~~r~~~~~k~R~~v~~~l~~ 826 (933)
T COG0060 800 IDVEAALAARWEALLKLRDPVNKALEA 826 (933)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 344455555666655555444333
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=7.4e-160 Score=1514.60 Aligned_cols=762 Identities=29% Similarity=0.481 Sum_probs=668.4
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
++..|||.++|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 3556999999999999999999999764 34678999999999999999999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHH
Q 001303 218 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 297 (1104)
Q Consensus 218 ~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~ 297 (1104)
|||||+|||.+||++++.........+++++|+++|++|+.++++.+++||++||+|+||+|+|+||||.|+++|+|+|.
T Consensus 82 ~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~ 161 (861)
T TIGR00392 82 WDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFK 161 (861)
T ss_pred cCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999998763221223345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEccEeeeecCCCCcccccccccccc----cCcceEEeecCcccccccceEeeEeeecCCCcc--------e
Q 001303 298 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD----IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG--------E 365 (1104)
Q Consensus 298 ~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~----~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~--------~ 365 (1104)
+|+++|||||+.++|+|||.|+|+|||+||++.+ .. +..++++|++.+++. +
T Consensus 162 ~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~~~ 225 (861)
T TIGR00392 162 EAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVK----------------DPSIYVKFPVKKDKKTYLKVKLSS 225 (861)
T ss_pred HHHHCCCEeecceeeecCCCcCCcccHHHHhccccccccc----------------CceEEEEEEecCCcccccccccce
Confidence 9999999999999999999999999999999875 34 345678888865544 8
Q ss_pred EEEeeccccccccCceEEecCCcc-----------cc--------------------------ccccCcEeecCCCCCce
Q 001303 366 IVVATTRVETMLGDTAIAIHPEDA-----------RY--------------------------SHLHGKFAIHPFNGRKI 408 (1104)
Q Consensus 366 l~vaTTrPeTl~g~~aiaV~P~d~-----------ry--------------------------~~l~G~~~~~P~~~~~i 408 (1104)
|+|||||||||+||+||||||+++ +| .+|+|+++.||+.++.+
T Consensus 226 l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~ 305 (861)
T TIGR00392 226 LLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVS 305 (861)
T ss_pred EEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCcccc
Confidence 999999999999999999999975 44 56899999999999998
Q ss_pred ------eE-EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCC------CCCCCchhhHHH
Q 001303 409 ------PI-ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGL------EFEGMPRFKARE 475 (1104)
Q Consensus 409 ------pI-i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~------~~~Gl~~~~ar~ 475 (1104)
|| ++|+ +|++++|||+||+|||||++||++|++|||+++++||++|+++.+.+. .|.|+++++||+
T Consensus 306 ~~~~~~p~v~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~ 384 (861)
T TIGR00392 306 QLKEGAPVVIGGD-HVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANK 384 (861)
T ss_pred ccccCCcEEeCCC-CCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHH
Confidence 96 5557 499999999999999999999999999999999999999998766552 489999999999
Q ss_pred HHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc
Q 001303 476 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 555 (1104)
Q Consensus 476 ~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 555 (1104)
.|++.|++.|++++.+++.|+||+|||||++|++++++||||+++.+++++++++ ++++|+|+..++++.+||++
T Consensus 385 ~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~l~~ 459 (861)
T TIGR00392 385 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQI-----KKVNWVPEWGEGRFGNWLEN 459 (861)
T ss_pred HHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHh-----CCcEEECchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 57999999999999999999
Q ss_pred CCCeeeeccCCCcccceEEEEccCcchhhcc----------CCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCcee
Q 001303 556 IRDWCVSRQLWWGHQIPAWYVTLEDDELKEL----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLD 625 (1104)
Q Consensus 556 l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlD 625 (1104)
++|||||||||||||||+|+|..|++..... ..+.+.|...... +........||.+ ..++|++||||
T Consensus 460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~-~~~~~~~~~~~~~-~~~~r~~dvlD 537 (861)
T TIGR00392 460 RPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHR-DFLDKITLKSGDG-GEYRRVPDVLD 537 (861)
T ss_pred CCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccchh-hhcCchhccCCCC-cceEEcccccc
Confidence 9999999999999999999998775421000 0011222211100 0001111234433 46899999999
Q ss_pred eEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCC
Q 001303 626 TWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLG 705 (1104)
Q Consensus 626 tWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~G 705 (1104)
||||||++|++.++||.++.+|++|||+|++++|+||+|||+.+|++.++.++|..||++|++||||+|.+|+|||||+|
T Consensus 538 vWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkG 617 (861)
T TIGR00392 538 VWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLG 617 (861)
T ss_pred chhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCC
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHH
Q 001303 706 NVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ 785 (1104)
Q Consensus 706 NvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~ 785 (1104)
|||+|.|+|+ +||+|+|||||++. +.++|++|+.+.+.+..+
T Consensus 618 NvI~p~d~i~-------------------------------------~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 618 NVVDPLKVIN-------------------------------------KYGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred CCCCHHHHHH-------------------------------------HcCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 9999999998 89999999999998 889999999999988665
Q ss_pred -HHHHHHHHHHHHh--hhhCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHH
Q 001303 786 -WCNKLWNAVRFSM--SKLGEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 861 (1104)
Q Consensus 786 -f~nKl~N~~rf~l--~~~~~~~~p~~-~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~ 861 (1104)
++|++||+++|++ +++.+ +.|.. ......+...|+|++++++.+++.+.++|++|+|+.|++.+++|++.++||+
T Consensus 660 ~~~n~l~N~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~ 738 (861)
T TIGR00392 660 KYRKIRWNTYRFLLTYANLDK-FDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNW 738 (861)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 66543 44321 1111245678999999999999999999999999999999999998889999
Q ss_pred HHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcH
Q 001303 862 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDE 941 (1104)
Q Consensus 862 Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~ 941 (1104)
|++.+|++++..... ..+++++.+|+.+++.+++||+|||||+||+||+.|+... ..+||+.++||++++.+.|+
T Consensus 739 Yi~~~k~~lw~~~~~--~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~---~~~si~~~~wP~~~~~~~d~ 813 (861)
T TIGR00392 739 YIRIIRDRLYCEAKD--NDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGE---EEESVHLNLWPEVDEEFIDE 813 (861)
T ss_pred HHHHhhHHhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccC---CCCceeccCCCCCchhhcCH
Confidence 999999977654221 0334788999999999999999999999999999997531 23699999999999888899
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHhhccCCCCc
Q 001303 942 RAEFEMDLVESTVRCIRSLRAEVLGKQKNER 972 (1104)
Q Consensus 942 ~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~ 972 (1104)
.++..++.++++++.+|++|++. +++.+
T Consensus 814 ~~~~~~~~l~~~i~~ir~ir~~~---~~~~~ 841 (861)
T TIGR00392 814 ALEANMAIVREIVEAFLALRDAA---NKKLR 841 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---Chhhh
Confidence 99999999999999999999998 76433
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-144 Score=1379.06 Aligned_cols=733 Identities=20% Similarity=0.288 Sum_probs=605.2
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCC----CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEe
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKS----SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 215 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~----~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~ 215 (1104)
+++.+++.++|++||++|+++++|+++.+. ++++|++++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 456788899999999999999999998642 3478999999999999999999999999999999999999999999
Q ss_pred ccCCCcCChHHHHHHHHHH--HHcCCCc----------------------cccCHHHHHHHHHHHHHH------------
Q 001303 216 PGMDHAGIATQVVVEKKLM--RERKLTR----------------------HDIGREQFVSEVWKWKDE------------ 259 (1104)
Q Consensus 216 ~G~D~~Glp~q~~vek~l~--~~~g~~~----------------------~~~~re~f~~~~~~~~~~------------ 259 (1104)
|||||||+||+..||+... .+.|..+ .++++++|+++|++++.+
T Consensus 89 ~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~ 168 (1084)
T PLN02959 89 FAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMR 168 (1084)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHh
Confidence 9999999999999988532 2345332 356788999998888755
Q ss_pred ---------------------HHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHhcCcEEEccEeeeecC
Q 001303 260 ---------------------YGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDC 316 (1104)
Q Consensus 260 ---------------------~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp 316 (1104)
+...++++|++||+++||+|+|+||| |.|.++|+|+|.+|+++|+||||.|||+|||
T Consensus 169 ~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp 248 (1084)
T PLN02959 169 SFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSP 248 (1084)
T ss_pred hcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCC
Confidence 22678999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCcccccccccccccCcc---eEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCcc----
Q 001303 317 VLRTAISDIEVDYVDIPKR---EMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---- 389 (1104)
Q Consensus 317 ~~~TaLsd~EVe~~~~~~~---t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~---- 389 (1104)
.|+|+|||+|+++.+..++ ++++++..+. . .+.+ . .+.+++.+|+|||||||||+|+|||||||+++
T Consensus 249 ~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~-~-~~~~---~-~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 249 LDGQPCADHDRASGEGVGPQEYVLIKMEVLPP-F-PGKL---K-ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred CCCCCchhhHHhcCCCCCcceeEEEEEeecCc-c-hhhh---h-hcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 9999999999988764433 2233322110 0 0000 0 12345679999999999999999999999976
Q ss_pred ------------c------c------------------ccccCcEeecCCCCCc-eeEEecCccccCCCCCCceecCCCC
Q 001303 390 ------------R------Y------------------SHLHGKFAIHPFNGRK-IPIICDAILVDPKFGTGAVKITPAH 432 (1104)
Q Consensus 390 ------------r------y------------------~~l~G~~~~~P~~~~~-ipIi~d~~~V~~~~GTG~V~~~Pah 432 (1104)
| | ++|+|+.+.||+++++ +||+++.+ |++++|||+||+||||
T Consensus 323 ~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~-V~~~~GTGvV~~vPah 401 (1084)
T PLN02959 323 EINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLT-ILTDKGTGVVTSVPSD 401 (1084)
T ss_pred EecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEE-EeCCCCeeeEEeCCCC
Confidence 2 4 5799999999999988 99999995 9999999999999999
Q ss_pred CcchHHH----------HHHhCC--------ccceecCCCCc----------------------------------cccC
Q 001303 433 DPNDFDV----------GKRHNL--------EFINIFTDDGK----------------------------------INSN 460 (1104)
Q Consensus 433 d~~D~~~----------~~~~~L--------~~~~iid~~G~----------------------------------~~~~ 460 (1104)
||+||.+ +++||| +++++||.+|. +.+.
T Consensus 402 ~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g 481 (1084)
T PLN02959 402 SPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDG 481 (1084)
T ss_pred CHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccc
Confidence 9999998 577887 56899888653 2222
Q ss_pred ---CCCCCCCCchhhHHHHHHHHHHHcCCeee-eecccccccccccCCCeeeeccccccccccc--hHHHHHHHhhhccC
Q 001303 461 ---GGLEFEGMPRFKAREAVNEALKKKGLYRG-AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCN--SMAMEALYAVMDDD 534 (1104)
Q Consensus 461 ---~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~-~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~--~~~~~~~~~v~~~~ 534 (1104)
+| +|.|++|++||+.|+++|+++|+++. .++ ..|+|+|||++|++++++||||+++ .+++++++++
T Consensus 482 ~m~~g-~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l---- 553 (1084)
T PLN02959 482 TMLVG-EYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCL---- 553 (1084)
T ss_pred cccCc-CcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHH----
Confidence 57 89999999999999999999998764 443 3589999999999999999999998 6999999999
Q ss_pred CCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCC-
Q 001303 535 KKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK- 613 (1104)
Q Consensus 535 ~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~- 613 (1104)
++|+|+|++++++|.+||+|++||||||||||||||| |++...-+.+.+++.|+.++++++..+.. ..++..
T Consensus 554 -~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~-----~~~g~~~ 626 (1084)
T PLN02959 554 -SKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGG-----DMYGKDK 626 (1084)
T ss_pred -cccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhh-----hccCCcc
Confidence 6899999999999999999999999999999999999 75422112233445666655544333221 111111
Q ss_pred -Cccccc-CCCceeeEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCc-eE
Q 001303 614 -KFEMCQ-DPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TK 685 (1104)
Q Consensus 614 -~~~l~~-d~dvlDtWFdS~l~p~s~~g~p~~-----~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PF-k~ 685 (1104)
.+...+ ++|||||||+||++|+++ |||.+ +.+|++|||+|++++|+||++||+.++++++.+++++.|| +.
T Consensus 627 ~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~ 705 (1084)
T PLN02959 627 SSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRG 705 (1084)
T ss_pred ccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 122233 789999999999999998 99975 4789999999999999999999999999999999999999 67
Q ss_pred EEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001303 686 VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 765 (1104)
Q Consensus 686 V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~ 765 (1104)
|++||||+ .+|+|||||+||||+|.++|+ +||||++||||++
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~-------------------------------------kyGADalRl~la~ 747 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIE-------------------------------------EFSADATRFALAD 747 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHH-------------------------------------HhCchHHHHHHhh
Confidence 99999999 999999999999999999998 8999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCC--CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCH
Q 001303 766 YTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGE--GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEF 843 (1104)
Q Consensus 766 ~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~--~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f 843 (1104)
.++..+|++|+.+.... +..+++|.++|+...+.. .+.+ ...++..|+||+++|+.+++.++++|++|+|
T Consensus 748 ~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~-----~~~~~~~D~wils~l~~~i~~v~~a~e~y~f 819 (1084)
T PLN02959 748 AGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRT-----GPPSTYADRVFENEINIAIAETEKNYEAMMF 819 (1084)
T ss_pred cCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 88888999999877654 345566776666554321 1211 1135688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHH-HHhhcc--cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCC
Q 001303 844 SDAASTVYSWWQYQFCDVF-IEAIKP--YFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 920 (1104)
Q Consensus 844 ~~a~~~i~~f~~~~~~n~Y-ie~~K~--~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~ 920 (1104)
+.|++.. +| ++.+++ ++++++. ..++.+|+.+|+.+++||||||||+|||||+.|++.
T Consensus 820 ~~A~~~~----------~Yel~~~k~~yr~~~~~~------~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--- 880 (1084)
T PLN02959 820 REALKSG----------FYDLQAARDEYRLSCGSG------GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--- 880 (1084)
T ss_pred HHHHHHH----------HHHHHHhHHHHhhccccc------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC---
Confidence 9999963 23 444444 3333211 135779999999999999999999999999999532
Q ss_pred CCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHh
Q 001303 921 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEV 964 (1104)
Q Consensus 921 ~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~ 964 (1104)
.+||+.++||.++. .|+.++..++.+++++..||+++..+
T Consensus 881 --~~sI~~~~wP~~~~--~d~~~e~~~~~l~~~i~~iR~~~~~~ 920 (1084)
T PLN02959 881 --EGFAVTAGWPVAGE--PDLTLKRANKYLQDSIVSFRKLLQKQ 920 (1084)
T ss_pred --CCeEEecCCCCCCc--cCHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 36999999999863 48889999999999999999999876
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=4e-142 Score=1351.56 Aligned_cols=732 Identities=21% Similarity=0.312 Sum_probs=623.6
Q ss_pred hHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHH
Q 001303 148 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 227 (1104)
Q Consensus 148 ~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~ 227 (1104)
+||++||++|+++++|+++.+ ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 599999999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-c----CCCccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q 001303 228 VVEKKLMRE-R----KLTRHDIGREQFVSEV--WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLY 300 (1104)
Q Consensus 228 ~vek~l~~~-~----g~~~~~~~re~f~~~~--~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ 300 (1104)
++|+..... . ..+.+++++++|.+.| ++|++++.+.+++||++||+|+||+|+|+||||.|.++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 998853211 1 1245789999999987 99999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCc
Q 001303 301 KEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDT 380 (1104)
Q Consensus 301 ~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~ 380 (1104)
++|+||+|.++|+|||.|+|+|||+||++.+..+ .+.+++++|++.+++.+|+|||||||||+|+|
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~--------------~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~t 226 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVT--------------IVEYILIKFELEDGAFYFVAATLRPETVYGVT 226 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccc--------------cceEEEEEEEcCCCceEEEEeeCCcchhhcce
Confidence 9999999999999999999999999998754322 14567889998777779999999999999999
Q ss_pred eEEecCCcc---------------------cc-------------ccccCcEeecCCCCCceeEEecCccccCCCCCCce
Q 001303 381 AIAIHPEDA---------------------RY-------------SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAV 426 (1104)
Q Consensus 381 aiaV~P~d~---------------------ry-------------~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V 426 (1104)
||||||+++ +| ++|+|+++.||++++.+||+++++ |++++|||+|
T Consensus 227 av~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~-V~~~~GTGvV 305 (938)
T TIGR00395 227 NCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEF-VDTTKGTGVV 305 (938)
T ss_pred eEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecce-eecCCCcceE
Confidence 999999986 24 689999999999999999999995 9999999999
Q ss_pred ecCCCCCcchHHHHHHh--------------CCccceecCC---------------------------------------
Q 001303 427 KITPAHDPNDFDVGKRH--------------NLEFINIFTD--------------------------------------- 453 (1104)
Q Consensus 427 ~~~Pahd~~D~~~~~~~--------------~L~~~~iid~--------------------------------------- 453 (1104)
|+|||||++||++++++ +++++++|+.
T Consensus 306 ~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~ 385 (938)
T TIGR00395 306 MSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYH 385 (938)
T ss_pred EeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhcc
Confidence 99999999999998864 4666776643
Q ss_pred CCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeec-cccccccccc--hHHHHHHHhh
Q 001303 454 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IKPQWYVNCN--SMAMEALYAV 530 (1104)
Q Consensus 454 ~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~-~~~QWFl~~~--~~~~~~~~~v 530 (1104)
+|+|++++| +|+|+++++||+.|+++|+++|+++..+.+.+ .|+|+|||++|++. +++||||+++ .+++.+++++
T Consensus 386 ~G~m~~~~~-~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l 463 (938)
T TIGR00395 386 TGVMIYNIP-PYKGMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECL 463 (938)
T ss_pred CceeccCCc-ccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHH
Confidence 467787888 99999999999999999999999998876633 57788999999987 9999999999 5999999999
Q ss_pred hccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceE---EEEccCcchhhccCCCCCceEEecCHHHHHHHHh
Q 001303 531 MDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELGSYNDHWIVARDEKEALAVAN 607 (1104)
Q Consensus 531 ~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 607 (1104)
++++|+|+..++++.+||+|++|||||||||||||||+ |++. .+++++.|+.++.+++.....
T Consensus 464 -----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ie----slsdstiY~~~~~i~~~l~~~----- 529 (938)
T TIGR00395 464 -----EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIE----SLSDSTIYMAYYTIAHYLNKD----- 529 (938)
T ss_pred -----hcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEee----ecchhhhhhhhccHHHHhhcc-----
Confidence 57999999999999999999999999999999999995 4442 122344454433333222110
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCC
Q 001303 608 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 682 (1104)
Q Consensus 608 ~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~-----~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~P 682 (1104)
.++ .. ...++++|+||.++..+ ...|||.. +.+|++|||+|++++|+||++||..++++++.++.+..|
T Consensus 530 -~~~--~~--~l~~ev~D~~~~~~~~~-~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~ 603 (938)
T TIGR00395 530 -YYG--NE--QMTDEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKF 603 (938)
T ss_pred -CCC--hH--HCCcccCceEEECCCCh-hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccc
Confidence 010 01 12468999999865444 34477753 468999999999999999999999999988888877766
Q ss_pred c-eEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHH
Q 001303 683 F-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 761 (1104)
Q Consensus 683 F-k~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~ 761 (1104)
| +.|++||||++ +|+|||||+||||+|.++|+ +||+|++||
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~-------------------------------------~yGaDalRl 645 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVE-------------------------------------KFGADVARL 645 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHH-------------------------------------HcChHHHHH
Confidence 6 99999999996 89999999999999999998 899999999
Q ss_pred HHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcC
Q 001303 762 ALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSY 841 (1104)
Q Consensus 762 ~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~ 841 (1104)
||++.++.++|++|+.+.+.+.+++++++||++++++.... +.. ....+..|+||+++|+.+++.+.++|++|
T Consensus 646 ~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~----~~~---~~~~~~~D~wlls~l~~~i~~v~~a~e~~ 718 (938)
T TIGR00395 646 YIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN----LET---GEETSFIDRWLESRMNAAIKETYEAMENF 718 (938)
T ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc----cCC---CccCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999899999999999999999999999999988765422 110 01246789999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCC
Q 001303 842 EFSDAA-STVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 920 (1104)
Q Consensus 842 ~f~~a~-~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~ 920 (1104)
+|+.|+ ..+++|++ .||+|++..++. ...+|+.+++.+++||||||||+||+||+.|+.
T Consensus 719 ~~~~Al~~~l~~~~~--~~n~Yl~~~~~~--------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---- 778 (938)
T TIGR00395 719 QTRKAVKYALFDLQA--DVDWYRRRGGVN--------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---- 778 (938)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHhCcch--------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC----
Confidence 999999 67999973 489998863221 234799999999999999999999999999964
Q ss_pred CCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCC--CCcccEEEEecChhHHHHHHH
Q 001303 921 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIRS 990 (1104)
Q Consensus 921 ~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i--~~~~~~~I~~~~~~~~~~l~~ 990 (1104)
.+||+.++||++++.++|+.++..++.+++++++||++ . ++ +....+.|.+.+++..+.+..
T Consensus 779 --~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~~---~---~~~~~~p~~~~i~~~~~w~~~~~~~ 842 (938)
T TIGR00395 779 --EGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQEI---A---KIDASKPKRVYLYTSEDWKSQCLKI 842 (938)
T ss_pred --CCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHHh---h---ccCCCCCcEEEEEECcHHHHHHHHH
Confidence 36999999999998888999999999999999888885 3 44 233456666666555554443
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.5e-141 Score=1294.47 Aligned_cols=563 Identities=41% Similarity=0.741 Sum_probs=489.5
Q ss_pred HHHHHHHhcCCcccC--CCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHH
Q 001303 152 SWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV 229 (1104)
Q Consensus 152 ~~~~~W~~~~~f~~~--~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~v 229 (1104)
+||++|+++++|+.. .++++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||+|||.+|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999988 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 230 EKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 230 ek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
|+++..+.+.+++++|+++|++.|++|++++++.|++||++||+++||+|+|+||||.|+++|+|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99886666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcc-eEEEeeccccccccCceEEecCC-
Q 001303 310 RLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIVVATTRVETMLGDTAIAIHPE- 387 (1104)
Q Consensus 310 ~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~-~l~vaTTrPeTl~g~~aiaV~P~- 387 (1104)
++|+|||.|+|+|||+||+|+++. +.+++++|++.+++. +|+|||||||||+||+||||||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~ 224 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVK----------------SPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDF 224 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEE----------------EEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTS
T ss_pred CCCCcCcccccchhhhhccccccc----------------CceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCc
Confidence 999999999999999999999876 456789999987765 99999999999999999999999
Q ss_pred ----------------------------ccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHH
Q 001303 388 ----------------------------DARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV 439 (1104)
Q Consensus 388 ----------------------------d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~ 439 (1104)
+.++++|+|+++.||++++.+|||++++ |++++|||+||+|||||++||++
T Consensus 225 ~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~-V~~~~GTGiV~~~Pah~~~Dy~~ 303 (601)
T PF00133_consen 225 DYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDF-VDMDKGTGIVHSAPAHGPDDYEI 303 (601)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETT-S-SSSTTSEEEE-TTT-HHHHHH
T ss_pred cceeCCeeehHHHHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccc-cccccchhhhhhcccCCHHHHHH
Confidence 7789999999999999999999999996 99999999999999999999999
Q ss_pred HHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeecccccccccc
Q 001303 440 GKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNC 519 (1104)
Q Consensus 440 ~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~ 519 (1104)
|++|+|+++++||++|++++.+| +|.|+++++||+.|++.|+++|++...+++.|++|+|||||++|++++++||||++
T Consensus 304 ~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~ 382 (601)
T PF00133_consen 304 GKKHNLPIINPIDEDGRFTEEAG-KFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY 382 (601)
T ss_dssp HHHHHHCCGCCCCCTSTBBSCCS-TTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH
T ss_pred HhhcCceeeEecCCCceEeeccc-ccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCH
Q 001303 520 NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDE 599 (1104)
Q Consensus 520 ~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1104)
+++++++++++ ++++|+|+.++++|.+||++++|||||||||||||||+|+|..+++...... ...++.....
T Consensus 383 ~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~--~~~~~~~~~~ 455 (601)
T PF00133_consen 383 DDWKKKALEAL-----EKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIES--TIELIADRVE 455 (601)
T ss_dssp HHHHHHHHHHH-----HTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGG--HHHHHHHHST
T ss_pred HHhHHHHHhhc-----ccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccccccc--cccccccccc
Confidence 99999999999 4999999999999999999999999999999999999999987753211000 0000000000
Q ss_pred HHH-----HHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-ChhhhhhCCcCcccccccccccHHHHHHHH
Q 001303 600 KEA-----LAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVML 673 (1104)
Q Consensus 600 ~e~-----~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~-~~d~~~~~P~d~~~~G~Dil~fW~arm~~~ 673 (1104)
... ...+...++.++..++|++||||||||||++|+++++||.+ +.+|++|||+|++++|+||+++|+++|+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~ 535 (601)
T PF00133_consen 456 KEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFL 535 (601)
T ss_dssp HHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHH
T ss_pred cccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhh
Confidence 000 00111223556667899999999999999999999999987 789999999999999999999999999999
Q ss_pred HHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC
Q 001303 674 GIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE 753 (1104)
Q Consensus 674 ~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~ 753 (1104)
+.+++++.||++|++||||+|.+|+|||||+||||+|.++|+ +
T Consensus 536 ~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------------------------------~ 578 (601)
T PF00133_consen 536 SVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIE-------------------------------------K 578 (601)
T ss_dssp HHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHH-------------------------------------H
T ss_pred ccccccCCchheeeecccccccceeecccCCCcccCHHHHHH-------------------------------------H
Confidence 999999999999999999999999999999999999999999 9
Q ss_pred CCchHHHHHHHhccCcccccccc
Q 001303 754 CGTDALRFALVSYTAQSDKINLD 776 (1104)
Q Consensus 754 yGaDalR~~L~~~~~~~~di~f~ 776 (1104)
||||+||||+++++..++|++||
T Consensus 579 yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 579 YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred hCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999889999999996
No 21
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.6e-135 Score=1279.12 Aligned_cols=700 Identities=25% Similarity=0.377 Sum_probs=590.8
Q ss_pred CCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHH----------HHcCCCccccCHHHHHHHHHHH
Q 001303 187 LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLM----------RERKLTRHDIGREQFVSEVWKW 256 (1104)
Q Consensus 187 LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~----------~~~g~~~~~~~re~f~~~~~~~ 256 (1104)
||||||+|++++|+++||+||+||+|+|++||||||+||+..+|+... ...|+++.++ ++| ..|++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 799999999999999999999999999999999999999999976310 0114444433 345 347999
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcce
Q 001303 257 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKRE 336 (1104)
Q Consensus 257 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t 336 (1104)
++++.+.+++||++||+|+||+|+|+||||.|+++|+|+|.+|+++||||||.++|+|||.|+|+|||+||++.+..+
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~-- 155 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPE-- 155 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753222
Q ss_pred EEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCcc---------------------ccc---
Q 001303 337 MRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---------------------RYS--- 392 (1104)
Q Consensus 337 ~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~---------------------ry~--- 392 (1104)
.+.+++++|+ .+++.+|+|||||||||+|+|||||||+++ +|+
T Consensus 156 ------------~~~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~ 222 (897)
T PRK12300 156 ------------IVEYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRD 222 (897)
T ss_pred ------------cceEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCC
Confidence 2445677777 555678999999999999999999999997 455
Q ss_pred ----------cccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhC--------Cccceec---
Q 001303 393 ----------HLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN--------LEFINIF--- 451 (1104)
Q Consensus 393 ----------~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~--------L~~~~ii--- 451 (1104)
+|+|+++.||++++.+||+++++ |++++|||+||+|||||++||+++++++ |+++++|
T Consensus 223 ~~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~-V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~ 301 (897)
T PRK12300 223 VEIIEEIKGSELIGKKVKNPVTGKEVPILPADF-VDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVE 301 (897)
T ss_pred ceEEEEeehHHhcCCEEECCCCCCeEEEeccCe-eecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecC
Confidence 69999999999999999999996 9999999999999999999999999998 7776666
Q ss_pred --------------------C---------------CCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeeccccc
Q 001303 452 --------------------T---------------DDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 496 (1104)
Q Consensus 452 --------------------d---------------~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~ 496 (1104)
| .+|+|++++| +|+|+++++||+.|++.|+++|++.+...++|
T Consensus 302 ~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g-~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~- 379 (897)
T PRK12300 302 GYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTG-EYAGKPVREAREKITKDLIEKGIADIMYEFSN- 379 (897)
T ss_pred CcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeeccc-CcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-
Confidence 3 4899998888 99999999999999999999999999988888
Q ss_pred ccccccCCCeeeecc-ccccccccc--hHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceE
Q 001303 497 LGLCSRSNDVVEPMI-KPQWYVNCN--SMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA 573 (1104)
Q Consensus 497 ~p~c~Rs~~~ie~~~-~~QWFl~~~--~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~ 573 (1104)
+|+|||||++|++++ ++||||+++ ++++++++++ ++++|+|+.+++++.+||+|++|||||||||||||||+
T Consensus 380 ~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~ 454 (897)
T PRK12300 380 RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKAL-----DNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPW 454 (897)
T ss_pred CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHH-----ccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCc
Confidence 577779999999875 699999998 7999999999 68999999999999999999999999999999999995
Q ss_pred ---EEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcc---cccccCCCC----
Q 001303 574 ---WYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP---LSVLGWPDD---- 643 (1104)
Q Consensus 574 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p---~s~~g~p~~---- 643 (1104)
|.+..+ .+++.|+..+.+++..++ ++.....+ .++++|+||.++..+ ....|||.+
T Consensus 455 ~~~w~~esl----~ds~iY~~~~~i~~~l~~--------~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~ 520 (897)
T PRK12300 455 DEEWIIESL----SDSTIYMAYYTIAHKIRE--------YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEE 520 (897)
T ss_pred cCCEEeeec----cccchhhhHHHHHHHHHH--------cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHH
Confidence 655422 223333332222211111 11111112 346778887654332 123466653
Q ss_pred -ChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCc-eEEEEccceeCCCCccccccCCCccCccccccccCchh
Q 001303 644 -TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 721 (1104)
Q Consensus 644 -~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~ 721 (1104)
+++|++|||+|++++|+||++||..++++++..+.+..|| ++|++||||++ +|+|||||+||||||.++|+
T Consensus 521 ~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~------ 593 (897)
T PRK12300 521 MREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIE------ 593 (897)
T ss_pred HHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHH------
Confidence 3579999999999999999999999989889999988888 89999999997 89999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 001303 722 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 801 (1104)
Q Consensus 722 l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~ 801 (1104)
+||+|++||||++.++.++|++|+.+.+.+++++++++||+++++.+..
T Consensus 594 -------------------------------~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~ 642 (897)
T PRK12300 594 -------------------------------EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIG 642 (897)
T ss_pred -------------------------------HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999998875432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHH
Q 001303 802 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 881 (1104)
Q Consensus 802 ~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r 881 (1104)
. . ...+..|+||+++++.+++.++++|++|+|+.|+++++.|+++ .+|+|++.+++
T Consensus 643 ~-----~-----~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k~------------- 698 (897)
T PRK12300 643 G-----E-----EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLN-DLRWYLRRVGE------------- 698 (897)
T ss_pred C-----c-----cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHhcch-------------
Confidence 1 1 1346789999999999999999999999999999999877654 47999998765
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHH
Q 001303 882 SAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLR 961 (1104)
Q Consensus 882 ~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr 961 (1104)
.+..+|+.+++.+++||+|||||+||+||+.|+. .+||+.+.||++++.+.|+.++..++.++++++.+|++|
T Consensus 699 -~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~ 771 (897)
T PRK12300 699 -ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG------EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREIL 771 (897)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC------CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2467899999999999999999999999999975 369999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccce
Q 001303 962 AEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSS 1003 (1104)
Q Consensus 962 ~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~ 1003 (1104)
+.. +++. ..+.|.+.+++..+ ..+.|+...|+++
T Consensus 772 ~~~---~~~~-~~~~i~~~~~~~~~----~~~~~~~~~n~k~ 805 (897)
T PRK12300 772 KVA---KIKP-KKVYIYVAPDWKYE----VLEIAAENGDVKE 805 (897)
T ss_pred HHc---CCCC-ceEEEEECCHHHHH----HHHHHHHhhcHHH
Confidence 988 7743 35666666554433 2444554444443
No 22
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=4.2e-133 Score=1253.63 Aligned_cols=644 Identities=27% Similarity=0.398 Sum_probs=538.1
Q ss_pred CCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCC
Q 001303 144 YNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 223 (1104)
Q Consensus 144 y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Gl 223 (1104)
|||++||++||++|+++++|++..+.++++|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 89999999999999999999988766788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcC
Q 001303 224 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 303 (1104)
Q Consensus 224 p~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~G 303 (1104)
|++.++++ .|+++ .+|+.++++.|++||++||+++||+|+++|+||.|.++++|+|.+||++|
T Consensus 81 pie~~a~~-----~g~~p------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kG 143 (842)
T TIGR00396 81 PAENAAIK-----RGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKG 143 (842)
T ss_pred HHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 99988754 46654 48999999999999999999999999999999999999999999999999
Q ss_pred cEEEccEeeeecCCCCcccccccccccc---cCc---------ceEEeecCcccccc----------------------c
Q 001303 304 LIYRDLRLVNWDCVLRTAISDIEVDYVD---IPK---------REMRNVPGYEKQVE----------------------F 349 (1104)
Q Consensus 304 lIyr~~~~v~wcp~~~TaLsd~EVe~~~---~~~---------~t~~~~~~y~~~~~----------------------~ 349 (1104)
+||++.++|||||.|+|+|||+||++.. ..+ ..+++++.|++.+. -
T Consensus 144 liy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 144 LAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGK 223 (842)
T ss_pred CeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccc
Confidence 9999999999999999999999995322 111 23677777764321 1
Q ss_pred ceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccc---------------------------------cccC
Q 001303 350 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYS---------------------------------HLHG 396 (1104)
Q Consensus 350 g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~---------------------------------~l~G 396 (1104)
+..++++|++.+++.+|+|||||||||+|++||||||+++++. .++|
T Consensus 224 s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (842)
T TIGR00396 224 SEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTG 303 (842)
T ss_pred cceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecC
Confidence 3457788999876679999999999999999999999997542 2889
Q ss_pred cEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC------------CCccccCCCCC
Q 001303 397 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD------------DGKINSNGGLE 464 (1104)
Q Consensus 397 ~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~------------~G~~~~~~g~~ 464 (1104)
+++.||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|++ +|+|++ .| .
T Consensus 304 ~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~-~ 380 (842)
T TIGR00396 304 IKAIHPLTGEKIPIWVANY-VLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SG-E 380 (842)
T ss_pred CEEECCCCCCEeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-ch-h
Confidence 9999999999999999996 9999999999999999999999999999999999983 788874 47 8
Q ss_pred CCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccc
Q 001303 465 FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQ 544 (1104)
Q Consensus 465 ~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~ 544 (1104)
|.||++.+||++|++.|+++|++.+. +.
T Consensus 381 ~~Gl~~~~A~~~Ii~~L~~~g~~~~~-----------------------------------------------v~----- 408 (842)
T TIGR00396 381 FNGLNSSEAREAIIAMLEKEGKGKRK-----------------------------------------------VN----- 408 (842)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCce-----------------------------------------------EE-----
Confidence 99999999999999999999985211 11
Q ss_pred cHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch-hh-----ccCCCC-CceEEec-CHHHHHHHHhhhcCCCCcc
Q 001303 545 YTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LK-----ELGSYN-DHWIVAR-DEKEALAVANKKFSGKKFE 616 (1104)
Q Consensus 545 ~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~-~~-----~~~~~~-~~~~~~~-~~~e~~~~~~~~~~~~~~~ 616 (1104)
.+++|||||||||||+|||+|||..|+.. .+ ..-+.. ...-.+. ............||.++..
T Consensus 409 ---------yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~ 479 (842)
T TIGR00396 409 ---------YRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKP 479 (842)
T ss_pred ---------eecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCC
Confidence 15789999999999999999999877531 11 000000 0000011 1122223334567777777
Q ss_pred cccCCCceeeEeccCCcccccccCCC------CChhhhhhCCcCcccccccc--cccHHHHHHHHHHh----hcCCCCce
Q 001303 617 MCQDPDVLDTWFSSGLFPLSVLGWPD------DTDDLKAFYPTSVLETGHDI--LFFWVARMVMLGIK----LGGEVPFT 684 (1104)
Q Consensus 617 l~~d~dvlDtWFdS~l~p~s~~g~p~------~~~d~~~~~P~d~~~~G~Di--l~fW~arm~~~~~~----l~g~~PFk 684 (1104)
++|++||||||||||| |+..+.||. +.+++++|||+|++++|+|+ +|+|++|+....+. +.++.||+
T Consensus 480 ~~retDtmDtw~dSsw-y~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk 558 (842)
T TIGR00396 480 ALRETDTMDTFAGSSW-YYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFK 558 (842)
T ss_pred cEeCCCCCCCcccCCH-HHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHH
Confidence 9999999999999994 444444554 45678999999999999884 57777777443332 46889999
Q ss_pred EEEEccceeC----CCCc---------------------------cccccCCCccCccccccccCchhHHHHhhcCCCCh
Q 001303 685 KVYLHPMIRD----AHGR---------------------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 733 (1104)
Q Consensus 685 ~V~~Hg~v~D----~~G~---------------------------KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~ 733 (1104)
+|++||||+| ++|+ |||||+||+|+|.++|+
T Consensus 559 ~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~------------------ 620 (842)
T TIGR00396 559 KLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK------------------ 620 (842)
T ss_pred HHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH------------------
Confidence 9999999999 8999 99999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCC
Q 001303 734 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHP 813 (1104)
Q Consensus 734 ~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~ 813 (1104)
+||+|++|||+++.++.++|++|+.+.+.+.++|+++|||+++++++++.+ +.. ...
T Consensus 621 -------------------~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~-~~~---~~~ 677 (842)
T TIGR00396 621 -------------------KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDG-KTY---LTP 677 (842)
T ss_pred -------------------HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---CCc
Confidence 899999999999888888999999999999999999999999998776532 210 111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHH
Q 001303 814 HNLPFSCKWILSVLNKAISRTASSLNSYE-FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCL 892 (1104)
Q Consensus 814 ~~~~~~D~wils~L~~~v~~v~~~~e~~~-f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l 892 (1104)
..++..|+||+++|+++++.++++|++|+ |+.|++++|+|+ +++++ |. . ..+|+.++
T Consensus 678 ~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~-n~L~~-~~----------------~----~~~l~~~l 735 (842)
T TIGR00396 678 TILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL-NALYK-AK----------------K----DALYLEYL 735 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHh-hh----------------h----HHHHHHHH
Confidence 23567899999999999999999999988 999999999997 44432 10 0 13789999
Q ss_pred HHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCC
Q 001303 893 ETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 937 (1104)
Q Consensus 893 ~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~ 937 (1104)
+.+++||||||||+|||||+.|+.. ..||+.++||++++.
T Consensus 736 ~~ll~lLaPf~PhiaEElW~~l~~~-----~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 736 KGFLTVLSPFAPHLAEELWEKLGSE-----PFIIKQAKWPKVDET 775 (842)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhCCC-----CCeeecCCCCCCCHH
Confidence 9999999999999999999999741 258999999998754
No 23
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.9e-132 Score=1243.23 Aligned_cols=650 Identities=28% Similarity=0.431 Sum_probs=539.6
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
|.+.|||.++|++||++|+++++|++..+.+ ++|++++|||||||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 3467999999999999999999999876434 479999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||+|||.++++ .|++ +++|++++++.|++||++||+++||+++|+|+||+|.++|+++|.+|
T Consensus 80 ~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 142 (805)
T PRK00390 80 AFGLPAENAAIK-----TGTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKL 142 (805)
T ss_pred CCCCHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHH
Confidence 999999988754 3654 35899999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCccccccccccc--ccCc---------ceEEeecCccccc---------------------
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPK---------REMRNVPGYEKQV--------------------- 347 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~--~~~~---------~t~~~~~~y~~~~--------------------- 347 (1104)
+++|+||++.++|+|||.|+|+||++||++. ...+ ..+++++.|+..+
T Consensus 143 ~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~w 222 (805)
T PRK00390 143 YEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNW 222 (805)
T ss_pred HHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhh
Confidence 9999999999999999999999999999742 1211 1244555554321
Q ss_pred -ccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCcccccc---------------------------------
Q 001303 348 -EFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH--------------------------------- 393 (1104)
Q Consensus 348 -~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~--------------------------------- 393 (1104)
..+..++++|++.+++.+|+|||||||||+|++||||||+++++..
T Consensus 223 ig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (805)
T PRK00390 223 IGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGV 302 (805)
T ss_pred ccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeee
Confidence 1235678999998767899999999999999999999999987643
Q ss_pred ccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC--------------CCcccc
Q 001303 394 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD--------------DGKINS 459 (1104)
Q Consensus 394 l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~--------------~G~~~~ 459 (1104)
|+|+++.||+.++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++||+ +|+|++
T Consensus 303 l~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~ 381 (805)
T PRK00390 303 FTGLYAIHPLTGEKIPVWIADY-VLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN 381 (805)
T ss_pred ecCcEEECCCCCCeeeEEEecc-ccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe
Confidence 5899999999999999999996 9999999999999999999999999999999999975 445543
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceE
Q 001303 460 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 539 (1104)
Q Consensus 460 ~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~ 539 (1104)
.| .|.|+.+++||++|++.|+++|++. +.+.
T Consensus 382 -~~-~~~Gl~~~~a~~~Ii~~L~~~g~~~-----------------------------------------------~~v~ 412 (805)
T PRK00390 382 -SG-ELDGLDSEEAKEAIIAWLEEKGLGK-----------------------------------------------RKVN 412 (805)
T ss_pred -cc-ccCCCCHHHHHHHHHHHHHHcCCCC-----------------------------------------------CceE
Confidence 36 8999999999999999999999841 1122
Q ss_pred EeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch-hhc--c---CC------CCCceEEecCHHHHHHHHh
Q 001303 540 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE--L---GS------YNDHWIVARDEKEALAVAN 607 (1104)
Q Consensus 540 ~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~-~~~--~---~~------~~~~~~~~~~~~e~~~~~~ 607 (1104)
+ +++|||||||||||||||+|||..|+.. .+. . -+ ..+.|. ..+.....
T Consensus 413 ~--------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~ 473 (805)
T PRK00390 413 Y--------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL-----AKHPEWVN 473 (805)
T ss_pred E--------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh-----hhchhhhC
Confidence 2 4789999999999999999999877531 000 0 00 001111 11222223
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCC------ChhhhhhCCcCcccccccc--cccHHHHH-----HHHH
Q 001303 608 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD------TDDLKAFYPTSVLETGHDI--LFFWVARM-----VMLG 674 (1104)
Q Consensus 608 ~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~------~~d~~~~~P~d~~~~G~Di--l~fW~arm-----~~~~ 674 (1104)
..||.++..++|++|||||||||+ ||+..++||.+ +++|++|||+|++++|+|+ +|+|++|+ ..++
T Consensus 474 ~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~ 552 (805)
T PRK00390 474 VTCPKCGKPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLG 552 (805)
T ss_pred CCccccCCCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555557999999999999998 78888888863 4678999999999999995 44555544 4444
Q ss_pred HhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001303 675 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 754 (1104)
Q Consensus 675 ~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~y 754 (1104)
+ +.++.||++|++|||| |||||+||+|+|.++|+ +|
T Consensus 553 ~-~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~-------------------------------------~y 588 (805)
T PRK00390 553 L-VSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIE-------------------------------------KY 588 (805)
T ss_pred c-ccCCcchhhheecCcE------EeCCCCCCCCCHHHHHH-------------------------------------Hc
Confidence 3 3789999999999999 99999999999999998 89
Q ss_pred CchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q 001303 755 GTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRT 834 (1104)
Q Consensus 755 GaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v 834 (1104)
|||++|||+++.++.++|++|+.+.+.+.++|++++||+++|.+++.. .+.+ .....|+|++++|+++++.+
T Consensus 589 gaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~-~~~~-------~~~~~D~~il~~l~~~i~~v 660 (805)
T PRK00390 589 GADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAG-ALDV-------AALSEDKELRRKLHKTIKKV 660 (805)
T ss_pred ChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccc-ccCc-------ccChhhHHHHHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999554432 1211 23468999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHC
Q 001303 835 ASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 914 (1104)
Q Consensus 835 ~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L 914 (1104)
+++|++|+|+.|++.+++|+ +++..+| + +.++.+|+.+++.+++||||||||+|||||+.|
T Consensus 661 ~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~-----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L 721 (805)
T PRK00390 661 TEDIERLRFNTAIAALMELV-NALYKAE-D-----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKL 721 (805)
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 99999999999999999998 5665555 1 134678999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHH
Q 001303 915 PQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCI 957 (1104)
Q Consensus 915 ~~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~i 957 (1104)
+. .+||+.++||.+++.+. .+..++.+.+|++++
T Consensus 722 ~~------~~sv~~~~wP~~~~~~~---~~~~~~~~iqingk~ 755 (805)
T PRK00390 722 GH------EGSIANAPWPTADEAAL---VEDEVTIVVQVNGKV 755 (805)
T ss_pred CC------CCeeEecCCCCCCHHHh---hhhccEEEEEEccce
Confidence 64 36899999999876543 333455555555533
No 24
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.1e-132 Score=1244.87 Aligned_cols=643 Identities=26% Similarity=0.401 Sum_probs=534.7
Q ss_pred hhhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEe
Q 001303 139 QMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWV 215 (1104)
Q Consensus 139 ~~~~~y~p~~iE~~~~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~ 215 (1104)
++++.|||++||++||++|+++++|+... +.++++|+|++|||||||. |||||+++++++|+++||+||+||+|+|+
T Consensus 75 ~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~ 154 (963)
T PLN02563 75 AAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHP 154 (963)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccc
Confidence 35678999999999999999999999865 4578899999999999997 99999999999999999999999999999
Q ss_pred ccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001303 216 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 295 (1104)
Q Consensus 216 ~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~ 295 (1104)
+||||||+|+|..+++ .|.++ .+|+.++++.|++||++||+|+||+|+++|+||.|+++|+|+
T Consensus 155 ~G~D~~GlPiE~~a~~-----~g~~p------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~ 217 (963)
T PLN02563 155 MGWDAFGLPAEQYAIE-----TGTHP------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWI 217 (963)
T ss_pred ccccccCcHHHHHHHH-----cCCCh------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHH
Confidence 9999999999876642 46543 479999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEccEeeeecCCCCccccccccccc--ccCcc---------eEEeecCcccccccc--------------
Q 001303 296 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKR---------EMRNVPGYEKQVEFG-------------- 350 (1104)
Q Consensus 296 F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~--~~~~~---------t~~~~~~y~~~~~~g-------------- 350 (1104)
|.+||++|||||+.++|||||.|+|+||+.||++. ++.+. ++++++.|++.+.-+
T Consensus 218 F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q 297 (963)
T PLN02563 218 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQ 297 (963)
T ss_pred HHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999863 33332 467778887644322
Q ss_pred -------eEeeEeeecCC-----CcceEEEeeccccccccCceEEecCCcc---------------cccc----------
Q 001303 351 -------VLTSFAYPLEG-----GLGEIVVATTRVETMLGDTAIAIHPEDA---------------RYSH---------- 393 (1104)
Q Consensus 351 -------~l~~~~~~l~~-----~~~~l~vaTTrPeTl~g~~aiaV~P~d~---------------ry~~---------- 393 (1104)
..++++|++.+ .+.+|+|||||||||+|++||||||+++ +|.+
T Consensus 298 ~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~ 377 (963)
T PLN02563 298 RNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLER 377 (963)
T ss_pred HHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhh
Confidence 24678888865 2468999999999999999999999996 3321
Q ss_pred ----------ccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC----------
Q 001303 394 ----------LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------- 453 (1104)
Q Consensus 394 ----------l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~---------- 453 (1104)
+.|.++.||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|+.
T Consensus 378 ~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~-V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~ 456 (963)
T PLN02563 378 TELQKEKTGVFTGSYAINPATGEAIPIWVADY-VLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEK 456 (963)
T ss_pred hhccceecccccCcEEeccCCCCeeEEEEecc-cCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccc
Confidence 4699999999999999999996 9999999999999999999999999999999999942
Q ss_pred ----CCccccCCC---CCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHH
Q 001303 454 ----DGKINSNGG---LEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEA 526 (1104)
Q Consensus 454 ----~G~~~~~~g---~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~ 526 (1104)
+|.|. |.| ..|.||.+++||++|++.|++.|++.+
T Consensus 457 ~y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~------------------------------------- 498 (963)
T PLN02563 457 AYTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK------------------------------------- 498 (963)
T ss_pred cccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC-------------------------------------
Confidence 34443 234 139999999999999999999998521
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch-------hhc----cC----CCCC
Q 001303 527 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-------LKE----LG----SYND 591 (1104)
Q Consensus 527 ~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~-------~~~----~~----~~~~ 591 (1104)
.+++ +++|||||||||||+|||+|||..|+.. ++. .. ...+
T Consensus 499 ----------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 499 ----------KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred ----------eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 1222 5899999999999999999999887631 111 00 0112
Q ss_pred ceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCCh------hhhhhCCcCccccccccc--
Q 001303 592 HWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD------DLKAFYPTSVLETGHDIL-- 663 (1104)
Q Consensus 592 ~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~------d~~~~~P~d~~~~G~Dil-- 663 (1104)
.|.. .....+....||.|+..++|++|||||||+|+|++ ..+.||.+++ .+++|||+|++++|.|+.
T Consensus 555 ~~pl----~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~-~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhail 629 (963)
T PLN02563 555 EPPL----AKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYY-LRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVL 629 (963)
T ss_pred CCch----hcchhhhcCcCcCCCCCcEECCCcCCchhhccHHH-HHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhh
Confidence 2221 11222334457777778999999999999998664 4456887532 346799999999999984
Q ss_pred -----ccHHHHHHHHHHhhcCCCCceEEEEccceeC---------CCCc-------------------------------
Q 001303 664 -----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRD---------AHGR------------------------------- 698 (1104)
Q Consensus 664 -----~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D---------~~G~------------------------------- 698 (1104)
|||+.+|+++|+ +.++.||++|++||||+| .+|+
T Consensus 630 HLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (963)
T PLN02563 630 HLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFV 708 (963)
T ss_pred HhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccc
Confidence 899999999999 578999999999999998 7888
Q ss_pred --------------cccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHH
Q 001303 699 --------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALV 764 (1104)
Q Consensus 699 --------------KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~ 764 (1104)
|||||+||||||.++|+ +||||+||||++
T Consensus 709 ~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-------------------------------------kYGADaLRl~ll 751 (963)
T PLN02563 709 LKDDPSIRLIARAHKMSKSRGNVVNPDDVVS-------------------------------------EYGADSLRLYEM 751 (963)
T ss_pred cccCCcccccccccccccccCCcCCHHHHHH-------------------------------------HcCcHHHHHHHH
Confidence 99999999999999999 899999999999
Q ss_pred hccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHH
Q 001303 765 SYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFS 844 (1104)
Q Consensus 765 ~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~ 844 (1104)
+.++..+|.+|+.+.+.++++|++++||++...... ...+.+.. .......|+|++++|+.+++.++++|++|+|+
T Consensus 752 ~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~-~~~~~~~~---~~~~~~~d~~ll~kl~~~ikkVte~~e~y~Fn 827 (963)
T PLN02563 752 FMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLP-DGSFRDGT---VVTDEEPSLEQLRLLHKCIAKVTEEIESTRFN 827 (963)
T ss_pred hCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhc-ccccCccc---cccCCcchHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999998654211 11121111 01123569999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCC
Q 001303 845 DAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE 924 (1104)
Q Consensus 845 ~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~ 924 (1104)
.|++++|+|+ +.++++ . .+++.+++.+++||||||||+|||||+.|+. .+
T Consensus 828 tAi~~lmef~-n~l~~~------------------~-----~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~------~~ 877 (963)
T PLN02563 828 TAISAMMEFT-NAAYKW------------------D-----KVPREAIEPFVLLLSPYAPHLAEELWFRLGH------SN 877 (963)
T ss_pred HHHHHHHHHH-HHHhCc------------------h-----HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC------CC
Confidence 9999999997 443221 0 1346789999999999999999999999974 36
Q ss_pred CcccccCCCCCCCC
Q 001303 925 SIMLCEYPSAVEGW 938 (1104)
Q Consensus 925 SI~~~~wP~~~e~~ 938 (1104)
||+.++||++++.+
T Consensus 878 sv~~~~WP~~d~~~ 891 (963)
T PLN02563 878 SLAYEPWPEANPSY 891 (963)
T ss_pred eeeeCCCCCCCHHH
Confidence 99999999987644
No 25
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-129 Score=1112.44 Aligned_cols=788 Identities=23% Similarity=0.340 Sum_probs=655.1
Q ss_pred ccccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHhHHHH
Q 001303 121 EEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 199 (1104)
Q Consensus 121 ~~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 199 (1104)
.+.++||| +.+.|.. -.+....+-|....++....+ ..++.|++++ +||.||||||+|.+++|
T Consensus 19 ~T~~lpKt--~v~~Ns~----------gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkd 82 (937)
T KOG0433|consen 19 ITSHLPKT--LVHFNST----------GRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKD 82 (937)
T ss_pred eecCCCCC--ccccccc----------cchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHH
Confidence 37889999 6665554 344556667777666665443 4567899999 99999999999999999
Q ss_pred HHHHHHHHCCCeeeEeccCCCcCChHH-HHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 001303 200 TIIRWRRMSGYNALWVPGMDHAGIATQ-VVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 278 (1104)
Q Consensus 200 ~~~Ry~rm~G~~Vl~~~G~D~~Glp~q-~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~ 278 (1104)
|+.||+-++|++|+++|||||||||++ .++-+.+..+. ..++.-+.+..++.++++.++++++.|+|+|+..||.
T Consensus 83 Iinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~ 158 (937)
T KOG0433|consen 83 IINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWE 158 (937)
T ss_pred HHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCC
Confidence 999999999999999999999999999 46655443222 3455567888899999999999999999999999999
Q ss_pred CccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeee
Q 001303 279 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYP 358 (1104)
Q Consensus 279 r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~ 358 (1104)
+.|.||||+|..+..++|.+||++|||||+.+||+|+|+.+|||++.|+||-+.+..+ -.||+||
T Consensus 159 n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------------S~Y~~F~ 223 (937)
T KOG0433|consen 159 NPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQST---------------SAYFRFK 223 (937)
T ss_pred CceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcce---------------eEEEEEe
Confidence 9999999999999999999999999999999999999999999999999998876543 3577888
Q ss_pred cCC------------CcceEEEeeccccccccCceEEecCCccc-------------c----------------------
Q 001303 359 LEG------------GLGEIVVATTRVETMLGDTAIAIHPEDAR-------------Y---------------------- 391 (1104)
Q Consensus 359 l~~------------~~~~l~vaTTrPeTl~g~~aiaV~P~d~r-------------y---------------------- 391 (1104)
|.+ +..|++||||+|||||+|.||+|||+... |
T Consensus 224 L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~ 303 (937)
T KOG0433|consen 224 LINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVG 303 (937)
T ss_pred ccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeee
Confidence 743 23689999999999999999999999541 1
Q ss_pred ----ccccCcEeecCC-CCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCC
Q 001303 392 ----SHLHGKFAIHPF-NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFE 466 (1104)
Q Consensus 392 ----~~l~G~~~~~P~-~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~ 466 (1104)
.+|.|.+|.||+ .....|++.+++ |+++.|||+||++||||++||.+|-.+||++.+++|++|+++.++|+.+.
T Consensus 304 t~~g~~L~~~~Y~~pl~~~~~~P~l~g~h-VT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~ 382 (937)
T KOG0433|consen 304 TVKGANLIGRRYKHPLHNELGLPILEGPH-VTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLD 382 (937)
T ss_pred ecchhhccCceecCcCccccCCccccccc-eecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccc
Confidence 257899999997 456799999885 99999999999999999999999999999999999999999999998999
Q ss_pred CCchhh-HHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEecccc
Q 001303 467 GMPRFK-AREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY 545 (1104)
Q Consensus 467 Gl~~~~-ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~ 545 (1104)
|+.|.+ ..+.|+..|. ..+++.++|.|+||+.|||+.|++.|.++|||+++++++..|.+++ ++++|+|...
T Consensus 383 Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al-----~~Vk~~P~~~ 455 (937)
T KOG0433|consen 383 GKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMAL-----DDVKVAPGDS 455 (937)
T ss_pred cchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHH-----hhceeCCcch
Confidence 999875 5678888888 6788999999999999999999999999999999999999999999 7899999999
Q ss_pred HHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhc-----------cCCCCCceEEecCHHHHHHHHhhhcCCCC
Q 001303 546 TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSGKK 614 (1104)
Q Consensus 546 ~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 614 (1104)
..++..++..+.+|||||||.||+|||++|....+..+.. ...+.+.|+....++-..++.....|...
T Consensus 456 ~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a 535 (937)
T KOG0433|consen 456 DLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIA 535 (937)
T ss_pred HHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhH
Confidence 9999999999999999999999999999998766543211 11234677766554333333332333334
Q ss_pred cccccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeC
Q 001303 615 FEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRD 694 (1104)
Q Consensus 615 ~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D 694 (1104)
..+.+.+|+||+|||||..+-+.++- ..-.++|++.+|.||+++||+++++++.+..+++||++|++|||++|
T Consensus 536 ~ey~kgtDimDVWFDSGssWs~v~~~-------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlD 608 (937)
T KOG0433|consen 536 SEYKKGTDIMDVWFDSGSSWSAVLDN-------EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLD 608 (937)
T ss_pred HHhccCCceeeeEecCCCcceeecCC-------CCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEec
Confidence 46788999999999999877666652 12257899999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccc
Q 001303 695 AHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKIN 774 (1104)
Q Consensus 695 ~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~ 774 (1104)
++|.|||||+||||||..|++|. . .-|.||||+||||++. +....|+.
T Consensus 609 E~G~KMSKSlGNVidP~~v~~G~--------------------------~-----k~payGaD~LR~WVA~-~~~t~d~~ 656 (937)
T KOG0433|consen 609 ENGNKMSKSLGNVVDPTMVTDGS--------------------------L-----KQPAYGADGLRFWVAG-SENTGESK 656 (937)
T ss_pred CCccchhhcccCcCCHHHHhCCc--------------------------c-----cCCCccccceeeeeec-ccccCcee
Confidence 99999999999999999999961 1 1358999999999985 44556999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 853 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~-~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f 853 (1104)
...+.+..+..-+.|++|++||+++++.+ +++. ..++...+..+|+++|..|+.+++++.+.|++|+|+++++.+..|
T Consensus 657 iGp~il~qv~e~l~K~R~T~RfllGnl~d-~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F 735 (937)
T KOG0433|consen 657 IGPKILDQVDEKLIKFRNTFRFLLGNLQD-FDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQF 735 (937)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHhhcccc-cCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999986 6655 445556788999999999999999999999999999999999999
Q ss_pred HHhhHhHHHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccC
Q 001303 854 WQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEY 931 (1104)
Q Consensus 854 ~~~~~~n~Yie~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~w 931 (1104)
+.++++++|++.+|++|+++ ++. .|+++++||.+++..+++.++||+||++||+||.||... +-++...|
T Consensus 736 ~~~~lSa~YfdivKDRLY~~~~~s~---~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~-----~~~f~~k~ 807 (937)
T KOG0433|consen 736 LQRNLSAFYFDIVKDRLYCDKVGSE---SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH-----EKIFRLKW 807 (937)
T ss_pred HHHHhhHHHHHHHhhhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCC-----CcccccCc
Confidence 99999999999999999987 455 899999999999999999999999999999999999532 23899999
Q ss_pred CCCCCCCCcHHhHHH--hHHHHHHHHHHHHHHHHhhc-cCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEE
Q 001303 932 PSAVEGWTDERAEFE--MDLVESTVRCIRSLRAEVLG-KQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLK 1005 (1104)
Q Consensus 932 P~~~e~~~d~~~e~~--~e~i~~ii~~iRslr~~~~~-k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~ 1005 (1104)
|.....|.....+.. +..++++....-+......+ +.++..+.++.....+ .-.+..+..+++.+.+.
T Consensus 808 ~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~------~~~~~~L~~~l~~~~~~ 878 (937)
T KOG0433|consen 808 EDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTI------RIYESELPELLNVSQVI 878 (937)
T ss_pred cccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeeccc------ccchhHHHHHHHHhhhh
Confidence 999998887665544 55555543333221111100 1335556666655443 11234455555555543
No 26
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-128 Score=1097.86 Aligned_cols=787 Identities=23% Similarity=0.381 Sum_probs=689.1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
.++++++..-|.+..++|.+.+.|+... .+++|+|.+.++||++||.+|.||.++.||+|++.||..|+||.|-..+|
T Consensus 4 ~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFG 83 (1070)
T KOG0434|consen 4 VPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFG 83 (1070)
T ss_pred ccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecc
Confidence 3567888889999999999999998754 36789999999999999999999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHHcCCCcc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHH
Q 001303 218 MDHAGIATQVVVEKKLMRERKLTRH----DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVT 293 (1104)
Q Consensus 218 ~D~~Glp~q~~vek~l~~~~g~~~~----~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~ 293 (1104)
|||||+|+|..+.|+| |++.. .+|.+++..+|+..+..|...+++...|||-|+||++.|.||+|.|.+.||
T Consensus 84 WD~HGlPVE~eIDKkL----gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvW 159 (1070)
T KOG0434|consen 84 WDTHGLPVEYEIDKKL----GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVW 159 (1070)
T ss_pred cccCCCccceeechhc----CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHH
Confidence 9999999888887765 66643 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEccEeeeecCCCCcccccccc--cccccCcceEEeecCcccccccceEeeEeeecCC-CcceEEEee
Q 001303 294 EAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVAT 370 (1104)
Q Consensus 294 ~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EV--e~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~-~~~~l~vaT 370 (1104)
|+|.+||++|++|||.+.++||..|.|+||+-|- .|+|+.+|.. .+.||+.+ ....++.||
T Consensus 160 wvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav----------------~v~F~li~~~~~slvAWT 223 (1070)
T KOG0434|consen 160 WVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAV----------------FVAFPLIGDPNVSLVAWT 223 (1070)
T ss_pred HHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeE----------------EEEeeccCCcceeEEEEe
Confidence 9999999999999999999999999999999887 5899998863 36778755 456899999
Q ss_pred ccccccccCceEEecCCccc----------------------c----------------ccccCcEeecCCC-------C
Q 001303 371 TRVETMLGDTAIAIHPEDAR----------------------Y----------------SHLHGKFAIHPFN-------G 405 (1104)
Q Consensus 371 TrPeTl~g~~aiaV~P~d~r----------------------y----------------~~l~G~~~~~P~~-------~ 405 (1104)
|+|||||+|.|+||||+... | +.|.|++|..+|. .
T Consensus 224 TTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~ 303 (1070)
T KOG0434|consen 224 TTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEE 303 (1070)
T ss_pred cCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhcc
Confidence 99999999999999999431 2 3688999988873 3
Q ss_pred CceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCC-----ccceecCCCCccccCCCCCCCCCchhhHHHHHHHH
Q 001303 406 RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 480 (1104)
Q Consensus 406 ~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~ 480 (1104)
....|++|+| |+.+.|||+||++||.|..||.+|...|+ .++|++|++|+++.+.. .|+|..+.||.+.||+.
T Consensus 304 ~aFrvl~d~y-Vt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~-dfaG~YVKDaDK~Ii~~ 381 (1070)
T KOG0434|consen 304 GAFRVLSDDY-VTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVT-DFAGQYVKDADKLIIRS 381 (1070)
T ss_pred CceEEeccCc-EecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccc-cccceeeccchHHHHHH
Confidence 4688999996 99999999999999999999999998876 56899999999999998 99999999999999999
Q ss_pred HHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccH-HHHHHHhccCCCe
Q 001303 481 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYT-AEWRRWLEAIRDW 559 (1104)
Q Consensus 481 L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~-~~~~~wl~~l~DW 559 (1104)
|++.|-++....+.|+||+||||.+|+.+++.|.||+++.++.+++++.. .+..|+|...+ ++|.|||+|.|||
T Consensus 382 lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn-----~~t~WVP~~ikeKRF~NWL~nARDW 456 (1070)
T KOG0434|consen 382 LKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN-----MKTHWVPQNIKEKRFANWLKNARDW 456 (1070)
T ss_pred HHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc-----cccccCChhhhHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999855 78999999975 7999999999999
Q ss_pred eeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHh-------------hhcCC--CCcccccCCCce
Q 001303 560 CVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVAN-------------KKFSG--KKFEMCQDPDVL 624 (1104)
Q Consensus 560 cISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-------------~~~~~--~~~~l~~d~dvl 624 (1104)
.|||+|+||+|||.|...+-. .-+.-.+..+..+... ...|. ....+.|-.+||
T Consensus 457 ~iSRnR~WGTPIpLWVSdD~e-----------evVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVf 525 (1070)
T KOG0434|consen 457 NISRNRYWGTPIPLWVSDDYE-----------EVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVF 525 (1070)
T ss_pred ccccccccCCCcceEEccCCc-----------eEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHh
Confidence 999999999999999864321 1111122222221110 11232 234688999999
Q ss_pred eeEeccCCcccccccCCCCC-hhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccccc
Q 001303 625 DTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 703 (1104)
Q Consensus 625 DtWFdS~l~p~s~~g~p~~~-~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 703 (1104)
|+||.||.+|++..+||.++ +.|+.-||+|+.-+|-||.|+||+.++.++.+|+|+.||++|+++|+|+.++|+|||||
T Consensus 526 DCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKr 605 (1070)
T KOG0434|consen 526 DCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKR 605 (1070)
T ss_pred hhhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhh
Confidence 99999999999999999864 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC-cccccccchHHHHH
Q 001303 704 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVVG 782 (1104)
Q Consensus 704 ~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~-~~~di~f~~~~i~~ 782 (1104)
+.|.-||..||+ +|||||||+||+.+.. .+..+.|..+.+.+
T Consensus 606 lkNYPdP~~iin-------------------------------------kYGADalRlYLInSPVvraE~LkFkeeGVre 648 (1070)
T KOG0434|consen 606 LKNYPDPSLIIN-------------------------------------KYGADALRLYLINSPVVRAENLKFKEEGVRE 648 (1070)
T ss_pred hhcCCCHHHHHH-------------------------------------hhcchheeeeeecCccccccccccchhhHHH
Confidence 999999999999 9999999999998543 46788999888866
Q ss_pred H-HHHHHHHHHHHHHHhhhhC-------CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001303 783 Y-RQWCNKLWNAVRFSMSKLG-------EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 854 (1104)
Q Consensus 783 ~-r~f~nKl~N~~rf~l~~~~-------~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~ 854 (1104)
. ...+--+||+++|+.++.. ..|.+... ....+.+|+||++..+.++.-+++-|++|++..++-.+..|+
T Consensus 649 vvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~--~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi 726 (1070)
T KOG0434|consen 649 VVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDS--VTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI 726 (1070)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhccccCCccccccc--cccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH
Confidence 4 5677789999999987742 23443322 225678999999999999999999999999999999999998
Q ss_pred HhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCC----CCCCCCccccc
Q 001303 855 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKG----CATKESIMLCE 930 (1104)
Q Consensus 855 ~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~----~~~~~SI~~~~ 930 (1104)
.++.||||...+.++.+++..- +.-.|..+|+.+|-++.++|+||+||+||.|||+|...-+ ..+..|||...
T Consensus 727 -D~LTNwYiR~nRrrlkGe~G~~--d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~ 803 (1070)
T KOG0434|consen 727 -DELTNWYIRFNRRRLKGENGEH--DCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLS 803 (1070)
T ss_pred -HHhhhhheehhhhhhcCCCchH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEee
Confidence 9999999999999998764321 4567889999999999999999999999999999964321 13457999999
Q ss_pred CCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCccc---EEEEecChhHHHHHHHHHHHHHhhhccceEEEe
Q 001303 931 YPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP---AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVL 1007 (1104)
Q Consensus 931 wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~---~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~ 1007 (1104)
||.+.++.+|+.+|..++.++.||...|.+|... +|+.+.+ +.|..+|++..+.+..+..+|...+||.++.+.
T Consensus 804 ~P~~~~~~~de~ve~~v~~m~siIdl~R~iRern---~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~ 880 (1070)
T KOG0434|consen 804 YPTPKEELIDETVERRVERMQSIIDLARNIRERN---TISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFT 880 (1070)
T ss_pred cCCchhhhccchHHHHHHHHHHHHHHHHHHhhcc---CCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeec
Confidence 9999999999999999999999999999999998 8854443 556667788888899999999999999999876
Q ss_pred cc
Q 001303 1008 LS 1009 (1104)
Q Consensus 1008 ~~ 1009 (1104)
++
T Consensus 881 ~d 882 (1070)
T KOG0434|consen 881 SD 882 (1070)
T ss_pred cc
Confidence 54
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-106 Score=973.50 Aligned_cols=636 Identities=28% Similarity=0.476 Sum_probs=512.0
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCC-CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSK-PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k-~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
|...|+|..||++||++|+++++|+.+.+.++ +||++++|+|||||.|||||++|||+.|+++||+||+|||||+++||
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGw 80 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGW 80 (814)
T ss_pred CCcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcc
Confidence 34679999999999999999999999887666 59999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001303 219 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 298 (1104)
Q Consensus 219 D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~ 298 (1104)
|++|+|++..+.+ .|.+ +..|+.++++.+++||++||+|+||+|++.|+||+|++++||+|.+
T Consensus 81 dafGlPae~~A~~-----~~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~k 143 (814)
T COG0495 81 DAFGLPAENAAIK-----IGTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLK 143 (814)
T ss_pred cccCchHHHHHHH-----hCCC------------hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHH
Confidence 9999999888765 3444 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEEccEeeeecCCCCccccccccccc-------ccCcc----eEEeecCcccc-------cc------------
Q 001303 299 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV-------DIPKR----EMRNVPGYEKQ-------VE------------ 348 (1104)
Q Consensus 299 L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~-------~~~~~----t~~~~~~y~~~-------~~------------ 348 (1104)
|+++||||++.++|||||.|+|+|+|+||... .+... ++++++.|++. +.
T Consensus 144 L~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~ 223 (814)
T COG0495 144 LYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQR 223 (814)
T ss_pred HHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHH
Confidence 99999999999999999999999999999743 22211 46788888632 11
Q ss_pred --cc--eEeeEeeecCCC--cceEEEeeccccccccCceEEecCCcccc-------------------------------
Q 001303 349 --FG--VLTSFAYPLEGG--LGEIVVATTRVETMLGDTAIAIHPEDARY------------------------------- 391 (1104)
Q Consensus 349 --~g--~l~~~~~~l~~~--~~~l~vaTTrPeTl~g~~aiaV~P~d~ry------------------------------- 391 (1104)
+| .-+.+.|.+.+. ...+.|+||||.|++|.+.+++.|+++.-
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 11 224566666554 46899999999999999999999998621
Q ss_pred ----ccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCC-----------Cc
Q 001303 392 ----SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDD-----------GK 456 (1104)
Q Consensus 392 ----~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~-----------G~ 456 (1104)
.-..|.+++||+++..+||+..++ |.+.+|||+||.+||||.+||+.+++++||+..+|... |.
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~-vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~ 382 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANY-VLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV 382 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCc-ccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce
Confidence 013577889999999999999996 99999999999999999999999999999999888643 44
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 457 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 457 ~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
+. |.| .|+|+...+|+..+...| +-....|||+++
T Consensus 383 li-nS~-~~~gl~~e~a~~~~~~~l--------------------------~~~~~~q~~v~Y----------------- 417 (814)
T COG0495 383 LI-NSG-GLDGLDYEEAKVKIRCGL--------------------------VKRGLGQWFVNY----------------- 417 (814)
T ss_pred Ee-ccc-cccCcchhHHHHHHHHhH--------------------------HHhcCCceEEec-----------------
Confidence 43 444 688888876655554444 344567999987
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch------hhccC-------------CCCCceEEec
Q 001303 537 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELG-------------SYNDHWIVAR 597 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~------~~~~~-------------~~~~~~~~~~ 597 (1104)
.++||++||||+||.|||+.+|..|+.. ++... +.+..|+.
T Consensus 418 ------------------~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~-- 477 (814)
T COG0495 418 ------------------RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVI-- 477 (814)
T ss_pred ------------------ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEE--
Confidence 4789999999999999999999877631 21110 01123443
Q ss_pred CHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccC------CCCChhhhhhCCcCcccccccccc--cHHHH
Q 001303 598 DEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW------PDDTDDLKAFYPTSVLETGHDILF--FWVAR 669 (1104)
Q Consensus 598 ~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~------p~~~~d~~~~~P~d~~~~G~Dil~--fW~ar 669 (1104)
..||. .+..|+.||||+|++|+++++.++.. +...+.|++|||.|++++|.|.+- .-++|
T Consensus 478 ----------~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~r 545 (814)
T COG0495 478 ----------ESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFR 545 (814)
T ss_pred ----------EecCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHH
Confidence 34554 46889999999999999888776642 333467999999999999988754 34444
Q ss_pred HHHHHHhh----cCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCC
Q 001303 670 MVMLGIKL----GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKA 745 (1104)
Q Consensus 670 m~~~~~~l----~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~ 745 (1104)
+....+.- ....||++++++|||+-.+|+|||||+||||+|+++|+
T Consensus 546 F~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~------------------------------ 595 (814)
T COG0495 546 FFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE------------------------------ 595 (814)
T ss_pred HHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH------------------------------
Confidence 43333322 23569999999999995589999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHH
Q 001303 746 DFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILS 825 (1104)
Q Consensus 746 ~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils 825 (1104)
+||||++|+|+++.++..+|.+|+.+.+.+.++|++++|+++.-........ .. ......++|.++
T Consensus 596 -------~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~------~~-~~~~~~~~~~~h 661 (814)
T COG0495 596 -------KYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE------LT-KEQGKEDRWLLH 661 (814)
T ss_pred -------HhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc------cc-chhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999886544322110 00 111167888877
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 001303 826 VLNKAISRTASSLNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMP 904 (1104)
Q Consensus 826 ~L~~~v~~v~~~~e~-~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmP 904 (1104)
++.+. +++.+++ +.|+.|+..+|.|+ +...+|...... . ..+|..+++.+++||+||+|
T Consensus 662 ~~~~~---v~~~~e~~~~~nt~i~~~m~l~--N~l~~~~~~~~~-----------~----~~~l~~~l~~~v~lLaP~aP 721 (814)
T COG0495 662 RTIKK---VTEDFEARQTFNTAIAALMELL--NALRKYLRRTEG-----------D----RKVLREALETWVRLLAPFAP 721 (814)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcccc-----------h----HHHHHHHHHHHHHHhccccc
Confidence 66555 5555555 89999999999996 444555443211 1 16788899999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCc
Q 001303 905 FVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTD 940 (1104)
Q Consensus 905 fitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d 940 (1104)
|+|||||+.|+. .++|..++||.+++...+
T Consensus 722 H~aEElW~~lg~------~~~v~~~~wP~~de~~l~ 751 (814)
T COG0495 722 HIAEELWEELGN------EGFVSNAPWPEPDEEALV 751 (814)
T ss_pred HHHHHHHHHhcC------CCceeeCCCCCCChhhcc
Confidence 999999999985 248999999999886544
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-101 Score=877.78 Aligned_cols=647 Identities=27% Similarity=0.390 Sum_probs=521.6
Q ss_pred hHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHH
Q 001303 148 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 227 (1104)
Q Consensus 148 ~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~ 227 (1104)
.||+.|.++|.+.-.|..+.+.++++ ||++++|||+|.|||||.+.|||.|+++||+||+||+|++++|||.+|||.|.
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAEN 112 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAEN 112 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhh
Confidence 79999999999988887776677888 88999999999999999999999999999999999999999999999999766
Q ss_pred HHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 228 VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 228 ~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
++ .+.|+.+. .|+..+++.+++||++||+++||+|+..|++|+|++|+||+|.+||++||.|+
T Consensus 113 AA-----iergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 113 AA-----IERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HH-----HhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 55 45788765 89999999999999999999999999999999999999999999999999999
Q ss_pred ccEeeeecCCCCcccccccccccccCcc------------eEEeecCcccccc-------------------cce--Eee
Q 001303 308 DLRLVNWDCVLRTAISDIEVDYVDIPKR------------EMRNVPGYEKQVE-------------------FGV--LTS 354 (1104)
Q Consensus 308 ~~~~v~wcp~~~TaLsd~EVe~~~~~~~------------t~~~~~~y~~~~~-------------------~g~--l~~ 354 (1104)
.+.+|||||.++|+|++++|+......| ++++++.|++... +|. -..
T Consensus 176 ~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~e 255 (876)
T KOG0435|consen 176 AEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAE 255 (876)
T ss_pred cccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceE
Confidence 9999999999999999999976555444 4788999986432 232 256
Q ss_pred EeeecCCC---cceEEEeeccccccccCceEEecCCcccc------c------cc------cCcEeecCCCCCceeEEec
Q 001303 355 FAYPLEGG---LGEIVVATTRVETMLGDTAIAIHPEDARY------S------HL------HGKFAIHPFNGRKIPIICD 413 (1104)
Q Consensus 355 ~~~~l~~~---~~~l~vaTTrPeTl~g~~aiaV~P~d~ry------~------~l------~G~~~~~P~~~~~ipIi~d 413 (1104)
+.|+|.++ ++.|.|+|||||||+|.+.+++.|++... + .| .+-++.||++|+.+||+..
T Consensus 256 l~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a 335 (876)
T KOG0435|consen 256 LMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVA 335 (876)
T ss_pred EEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEe
Confidence 78888554 48999999999999999999999998631 1 22 3346899999999999999
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccce----ecCCCCccccCCCCCCCC-CchhhHHHHHHHHHHHcCCee
Q 001303 414 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFIN----IFTDDGKINSNGGLEFEG-MPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 414 ~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~----iid~~G~~~~~~g~~~~G-l~~~~ar~~vi~~L~~~g~l~ 488 (1104)
++ |..-+|||+|+.+|+||..|++++++-++..+. +++.+|+.++.. .|+| +.+..|+..|++.++.+|+..
T Consensus 336 ~~-v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~--~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 336 DY-VLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQK--AFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred ch-hccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccc--cccchhHHHHHHHHHHHHHHhcCCCc
Confidence 96 999999999999999999999999996665443 346778776543 5788 666778999999999888642
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCc
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 568 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG 568 (1104)
.... ..|+||.||||||||
T Consensus 413 ~~vs-------------------------------------------------------------~kLkDWLiSRQRyWG 431 (876)
T KOG0435|consen 413 YVVS-------------------------------------------------------------YKLKDWLISRQRYWG 431 (876)
T ss_pred ceec-------------------------------------------------------------chhhhhhhhhhhccC
Confidence 1110 158999999999999
Q ss_pred ccceEEEEccCcch------hhccCCC-CCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001303 569 HQIPAWYVTLEDDE------LKELGSY-NDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 641 (1104)
Q Consensus 569 ~pIP~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p 641 (1104)
+|||+.+|..|+.. +|...+. ++...-|.....+.+..+..||.++...+|++||||||+||+|+||.++. |
T Consensus 432 TPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylD-p 510 (876)
T KOG0435|consen 432 TPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLD-P 510 (876)
T ss_pred CCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecC-C
Confidence 99999999988741 2222121 12233344555566667778898888999999999999999999999885 3
Q ss_pred CC------ChhhhhhCCcCccccc--ccccccHHHHHHHHHHhh----cCCCCceEEEEccceeCC------CC------
Q 001303 642 DD------TDDLKAFYPTSVLETG--HDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDA------HG------ 697 (1104)
Q Consensus 642 ~~------~~d~~~~~P~d~~~~G--~Dil~fW~arm~~~~~~l----~g~~PFk~V~~Hg~v~D~------~G------ 697 (1104)
.| +.--.+|.|+|+|++| |.+++..++|++...++- .+..||++++.+|||+.. .|
T Consensus 511 kN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ 590 (876)
T KOG0435|consen 511 KNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPE 590 (876)
T ss_pred CCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHH
Confidence 33 3334689999999999 788999999998776654 456899999999999842 12
Q ss_pred -------------------------ccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCC
Q 001303 698 -------------------------RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 752 (1104)
Q Consensus 698 -------------------------~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~ 752 (1104)
+|||||++|+|||.++++
T Consensus 591 ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~------------------------------------- 633 (876)
T KOG0435|consen 591 EVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL------------------------------------- 633 (876)
T ss_pred HhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-------------------------------------
Confidence 799999999999999998
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAIS 832 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~ 832 (1104)
+||+|++|+|++..+++.+++||+.+.+.|..+|+.++|++..-++..-.++-.+............++-+.+..|.+++
T Consensus 634 ~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 634 EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred HhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876665432221111111111234556789999999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 001303 833 RTASSLNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 911 (1104)
Q Consensus 833 ~v~~~~e~-~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLw 911 (1104)
.|+.+|+. +.++.|+..++.|. |.+...+ |..+... + .....|+.+..+|+|++||+|+|+|
T Consensus 714 ~vt~~~e~~~slNtaIS~~m~lt-N~l~~a~----k~~~~h~-~-----------~~~~al~~lv~mlaP~aPh~asE~W 776 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISDMMGLT-NALKKAL----KIVLVHS-P-----------EFERALEALVIMLAPFAPHVASELW 776 (876)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHHHHhh----hhhhhcC-h-----------HHHHHHHHHHHHHhccCchhHHHHH
Confidence 99999987 77999999999886 5444332 2222111 1 1223577788999999999999999
Q ss_pred HHCCCCCCCCCCCCc-ccccCCCCCCC
Q 001303 912 QRLPQPKGCATKESI-MLCEYPSAVEG 937 (1104)
Q Consensus 912 q~L~~~~~~~~~~SI-~~~~wP~~~e~ 937 (1104)
..|... .+. ....||.+++.
T Consensus 777 s~l~~~------~~~~~~~~WP~vd~~ 797 (876)
T KOG0435|consen 777 SALAND------LSWVSDVKWPEVDPD 797 (876)
T ss_pred HHHhcc------ccchhccCCccCChh
Confidence 999852 122 22269998764
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.5e-88 Score=821.58 Aligned_cols=505 Identities=20% Similarity=0.290 Sum_probs=414.4
Q ss_pred CcEEEECCCCCCCCCCCcchhHHh-HHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTT-AIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~-~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
++|+|++|||||||.||||||+++ +++|+++||+||+|++|++++|+|+||++|+.++++ .|+++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-----~g~~~--------- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-----EGVTP--------- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-----cCCCH---------
Confidence 479999999999999999999997 999999999999999999999999999999988864 47664
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
++|++++.+.|.++|++||+++| .+++|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|++.+|.+
T Consensus 69 ---~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g- 142 (556)
T PRK12268 69 ---QELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG- 142 (556)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec-
Confidence 58999999999999999999777 688999999999999999999999999999999999999999999854421
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
.||.|+
T Consensus 143 ---------------------------------------------------------------------~cp~c~----- 148 (556)
T PRK12268 143 ---------------------------------------------------------------------TCPYCG----- 148 (556)
T ss_pred ---------------------------------------------------------------------cCCCCC-----
Confidence 133322
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
.. +.+|.+|+.||..+
T Consensus 149 -----------------------~~----------------~~~G~~ce~cg~~~------------------------- 164 (556)
T PRK12268 149 -----------------------YE----------------GARGDQCDNCGALL------------------------- 164 (556)
T ss_pred -----------------------Cc----------------ccCCchhhhccccC-------------------------
Confidence 11 23788888888222
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeccCCCcc
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWWGH 569 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq~~WG~ 569 (1104)
++.....|+|+|||++++++.++|||++++++++.+++++ + ++.++|+..++++.+||+ +++|||||||++|||
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~---~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGi 239 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWI---E--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGI 239 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHH---h--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCe
Confidence 2223445999999999999999999999999999999999 3 578999999999999999 899999999999999
Q ss_pred cceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCccccccc-CCC---CCh
Q 001303 570 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 645 (1104)
Q Consensus 570 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g-~p~---~~~ 645 (1104)
||| |++. +..++|||||+.+.+++.++ |.. +..
T Consensus 240 piP-~~~~------------------------------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~ 276 (556)
T PRK12268 240 PVP-WPGF------------------------------------------EGKVFYVWFDAVIGYISASKEWAERTGDPE 276 (556)
T ss_pred eCC-CCCC------------------------------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCch
Confidence 999 6431 12689999999887776543 332 234
Q ss_pred hhhhhC----CcCcccccccccccHHHHHHHHHHhhc--CCCCceEEEEccceeCCCCccccccCCCccCccccccccCc
Q 001303 646 DLKAFY----PTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 719 (1104)
Q Consensus 646 d~~~~~----P~d~~~~G~Dil~fW~arm~~~~~~l~--g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l 719 (1104)
+|..|| |++++++|+||++||...+.++.+... ...| +.|++||||+ .+|+|||||+||||+|.|+|+
T Consensus 277 ~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~---- 350 (556)
T PRK12268 277 AWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALE---- 350 (556)
T ss_pred HHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHH----
Confidence 687788 778999999999988765444333332 4556 7999999998 589999999999999999999
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH--HHHHHHHHHHHHHHH
Q 001303 720 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFS 797 (1104)
Q Consensus 720 ~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~--~r~f~nKl~N~~rf~ 797 (1104)
+||+|++||||++.++.++|++|+++.+.. .+++++++||.+.++
T Consensus 351 ---------------------------------~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~ 397 (556)
T PRK12268 351 ---------------------------------RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRV 397 (556)
T ss_pred ---------------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHH
Confidence 899999999999998899999999998754 457899999987655
Q ss_pred hhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCccc
Q 001303 798 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 877 (1104)
Q Consensus 798 l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~ 877 (1104)
...+...+... ......+..|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...++..
T Consensus 398 ~~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~~~- 472 (556)
T PRK12268 398 LSFIEKYFGGI--VPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKTDR- 472 (556)
T ss_pred HHHHHHhcCCc--CCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcCCH-
Confidence 43332111110 11123567899999999999999999999999999999999997 69999999999995433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCC
Q 001303 878 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 934 (1104)
Q Consensus 878 ~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~ 934 (1104)
...+.+..++..+++.+++||||||||+|||||++|+. +++....||..
T Consensus 473 -~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-------~~~~~~~w~~~ 521 (556)
T PRK12268 473 -ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-------ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-------CCCcccchhhh
Confidence 13334555666788899999999999999999999974 24555677754
No 30
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=3.7e-86 Score=802.39 Aligned_cols=485 Identities=24% Similarity=0.342 Sum_probs=417.9
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 253 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~ 253 (1104)
|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||.+|+..+++ +|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----~g~~~------------ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----EGLTP------------ 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----cCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999888864 46654
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccC
Q 001303 254 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 333 (1104)
Q Consensus 254 ~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~ 333 (1104)
.++++.+.+.+++++++||+++| .+..|+++.|...|+++|.+|+++|+||++.+.|+|||.|+|+|+|.+|++
T Consensus 64 ~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g---- 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG---- 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC----
Confidence 47889999999999999999988 466799999999999999999999999999999999999999999975531
Q ss_pred cceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEec
Q 001303 334 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 413 (1104)
Q Consensus 334 ~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d 413 (1104)
.||.|
T Consensus 138 ------------------------------------------------------------------~cp~c--------- 142 (530)
T TIGR00398 138 ------------------------------------------------------------------TCPKC--------- 142 (530)
T ss_pred ------------------------------------------------------------------CCCCC---------
Confidence 13333
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecc
Q 001303 414 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 493 (1104)
Q Consensus 414 ~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~ 493 (1104)
+.. |.+|.+|++|| ...++.
T Consensus 143 -------------------~~~----------------~~~g~~ce~cg-------------------------~~~~~~ 162 (530)
T TIGR00398 143 -------------------GSE----------------DARGDHCEVCG-------------------------RHLEPT 162 (530)
T ss_pred -------------------CCc----------------ccccchhhhcc-------------------------ccCCHH
Confidence 322 23688899998 123566
Q ss_pred cccccccccCCCeeeeccccccccccchHHHHHHHhhhccCC-CceEEeccccHHHHHHHhcc-CCCeeeeccCC-Cccc
Q 001303 494 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK-KKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW-WGHQ 570 (1104)
Q Consensus 494 ~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~-~~i~~~P~~~~~~~~~wl~~-l~DWcISRq~~-WG~p 570 (1104)
.+.+|+|+|||+++|++.++|||++++++++.+++++ ++ ....+.|+..++.+.+||++ ++|||||||++ ||+|
T Consensus 163 ~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 163 ELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWI---RKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 7889999999999999999999999999999999998 43 23556688888999999998 99999999999 9999
Q ss_pred ceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-Chhhhh
Q 001303 571 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKA 649 (1104)
Q Consensus 571 IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~-~~d~~~ 649 (1104)
||.| +.+|+|||||+++.|++.++|+.. +.+|+.
T Consensus 240 vP~~---------------------------------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~ 274 (530)
T TIGR00398 240 VPND---------------------------------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKK 274 (530)
T ss_pred CCCC---------------------------------------------CCcEEEEeecchHHhHhhhccccCChhhHHH
Confidence 9964 126899999999999998888753 467899
Q ss_pred hCCcC-----cccccccccccH----HHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCch
Q 001303 650 FYPTS-----VLETGHDILFFW----VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 720 (1104)
Q Consensus 650 ~~P~d-----~~~~G~Dil~fW----~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~ 720 (1104)
|||.+ ++++|+||++|| +++++++ |..||++|++||||++. |+|||||+||+|+|.|+|+
T Consensus 275 ~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~-----~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~----- 343 (530)
T TIGR00398 275 WWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL-----GLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLA----- 343 (530)
T ss_pred hCCCCCCceEEEEEecccchhHHHHHHHHHHhC-----CCCCCCEEEeeccEEEC-CceecccCCceecHHHHHH-----
Confidence 99999 999999999964 4443332 24578999999999976 9999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH--HHHHHHHHHHHHHHh
Q 001303 721 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSM 798 (1104)
Q Consensus 721 ~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~--r~f~nKl~N~~rf~l 798 (1104)
+||+|++||||++.++.++|++|+++.+... .++++++||++.+++
T Consensus 344 --------------------------------~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 344 --------------------------------RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred --------------------------------HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888899999999998775 578999999987665
Q ss_pred hhhCC---CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCc
Q 001303 799 SKLGE---GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNP 875 (1104)
Q Consensus 799 ~~~~~---~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~ 875 (1104)
..+.. +..|. .......|+|+++++++++..+.++|++|+|+.|++.+++|+ +++|+|++.+|||....+.
T Consensus 392 ~~~~~~~~~~~~~----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKKYFNGVLPS----EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHHhcCCcCCC----CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCCh
Confidence 54332 11221 112457899999999999999999999999999999999997 7999999999999765433
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 876 AFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 876 ~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
. .++.++.+++.+++.+++||+|||||+||+||+.|+.
T Consensus 466 ~---~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 466 P---RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 2 4667899999999999999999999999999999985
No 31
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8.4e-87 Score=773.70 Aligned_cols=380 Identities=63% Similarity=1.117 Sum_probs=345.8
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+|||.++++++.. .+.++.++++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-EGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-cccchhcCCHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999988743 344667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
.|++|++++++.++++|++||+++||++++.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|||.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987210
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeee
Q 001303 412 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 491 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~ 491 (1104)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccc
Q 001303 492 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 571 (1104)
Q Consensus 492 ~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pI 571 (1104)
|+|||++++++.++|||++++++++++++.+ +++.+.|+|++.++++.+||++++|||||||++||+||
T Consensus 156 --------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipv 224 (382)
T cd00817 156 --------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAV---KEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRI 224 (382)
T ss_pred --------cccCCCeEEEEecCeeEEehHHHHHHHHHHH---hcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCcc
Confidence 8899999999999999999999999999999 66669999999999999999999999999999999999
Q ss_pred eEEEEccCcchhhccCCCCCceEEecCHHHHHHHH--hhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhh
Q 001303 572 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA--NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 649 (1104)
Q Consensus 572 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~ 649 (1104)
|+|+|..|+ ..+++...++....+ ...++.....+++++|||||||||+++|+++++||.++++|++
T Consensus 225 P~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~ 293 (382)
T cd00817 225 PAWYCKDGG-----------HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK 293 (382)
T ss_pred ceEEeCCCC-----------cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhh
Confidence 999998663 334444333332222 1122223346889999999999999999999999988778999
Q ss_pred hCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcC
Q 001303 650 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 729 (1104)
Q Consensus 650 ~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~ 729 (1104)
|||+|++++|+||++||+.++++++..+.|..||++|++||+|+|.+|+|||||+||+|+|.|+++
T Consensus 294 ~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~-------------- 359 (382)
T cd00817 294 FYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID-------------- 359 (382)
T ss_pred cCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001303 730 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 775 (1104)
Q Consensus 730 ~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f 775 (1104)
+||+|++|||+++.++.++|.+|
T Consensus 360 -----------------------~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 360 -----------------------GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred -----------------------hcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999886
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.3e-83 Score=790.09 Aligned_cols=484 Identities=20% Similarity=0.276 Sum_probs=410.0
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
.+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+..+++ .|+++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----~g~~p~--------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----EGITPE--------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----cCCCHH---------
Confidence 369999999999999999999999999999999999999999999999999999998864 477653
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
+|+++|++.++++|++||+++| .++.|+++.|.+.|+++|.+|+++|+||++..+|+|||.|+++|+|.+|+.
T Consensus 68 ---e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g-- 140 (673)
T PRK00133 68 ---ELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG-- 140 (673)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec--
Confidence 7899999999999999999988 578899999999999999999999999999999999999999999965431
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
.||.|+.
T Consensus 141 --------------------------------------------------------------------~cp~C~~----- 147 (673)
T PRK00133 141 --------------------------------------------------------------------TCPKCGA----- 147 (673)
T ss_pred --------------------------------------------------------------------ccCCCCC-----
Confidence 2444432
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeee
Q 001303 412 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 491 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~ 491 (1104)
. |.+|..|++||..+.
T Consensus 148 -----------------------~----------------d~~g~~ce~cg~~~~------------------------- 163 (673)
T PRK00133 148 -----------------------E----------------DQYGDNCEVCGATYS------------------------- 163 (673)
T ss_pred -----------------------c----------------ccCCchhhhccccCC-------------------------
Confidence 1 136777888983332
Q ss_pred cccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeccCCC-cc
Q 001303 492 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWW-GH 569 (1104)
Q Consensus 492 ~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq~~W-G~ 569 (1104)
+.+...|+|.+||.++|++.++|||++++++++.+++++ ++ +..| |++.++.+.+||+ +++|||||||++| |+
T Consensus 164 ~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi 238 (673)
T PRK00133 164 PTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI---TR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGF 238 (673)
T ss_pred hHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH---hc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccce
Confidence 223445899999999999999999999999999999998 43 3445 8899999999996 5999999999999 99
Q ss_pred cceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cCCCC--Chh
Q 001303 570 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD--TDD 646 (1104)
Q Consensus 570 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~-g~p~~--~~d 646 (1104)
|+|. + +..|+|||||+.+.|++.+ +|+.. ..+
T Consensus 239 pvP~------~---------------------------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~ 273 (673)
T PRK00133 239 EIPG------A---------------------------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLD 273 (673)
T ss_pred ECCC------C---------------------------------------CCeEEEEcccchhhhhHHHhhhcccccchh
Confidence 9992 0 2269999999999999988 68764 456
Q ss_pred hhhhCC-cC----ccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccccccc
Q 001303 647 LKAFYP-TS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 717 (1104)
Q Consensus 647 ~~~~~P-~d----~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~ 717 (1104)
|+.||| .+ ++++|+||++| |++++++.++ .++++|++||||++ +|+|||||+||+|+|.|+|+
T Consensus 274 ~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-----~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie-- 345 (673)
T PRK00133 274 WDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-----RLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLD-- 345 (673)
T ss_pred HHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC-----CCCCEEeeeccEEe-cCCcccccCCcccCHHHHHH--
Confidence 899994 32 89999999995 8887776443 34499999999997 99999999999999999999
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcc-cccccchHHHHH--HHHHHHHHHHHH
Q 001303 718 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKLWNAV 794 (1104)
Q Consensus 718 ~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~-~di~f~~~~i~~--~r~f~nKl~N~~ 794 (1104)
+||+|++||||++.++.+ +|++|+++.+.. ..+++|++||.+
T Consensus 346 -----------------------------------~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 346 -----------------------------------HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred -----------------------------------HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988 999999998754 556899999988
Q ss_pred HHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-
Q 001303 795 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD- 873 (1104)
Q Consensus 795 rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~- 873 (1104)
.++...+...+.... .....|+|+++++++++..+.++|++|+|+.|++.+++|+ ++||+|++.+|||....
T Consensus 391 ~R~~~~~~k~~~~~~-----~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~ 463 (673)
T PRK00133 391 SRTAGFINKRFDGKL-----PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQ 463 (673)
T ss_pred HHHHHHHHHhcCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcC
Confidence 776554433232211 1245699999999999999999999999999999999995 79999999999995433
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 874 NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 874 ~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
+.. ....+..+++.+++.+++||+|||||+||+||++|+.
T Consensus 464 ~~~---~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 464 DGE---RLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred CHH---HHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 222 3445666777788899999999999999999999986
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-82 Score=782.76 Aligned_cols=470 Identities=24% Similarity=0.353 Sum_probs=398.4
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
+++|+|++|+|||||.|||||++++++.|+++||+||+|++|+|++|+|+||++|+..++ +.|+++.
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~-----~~g~~~~-------- 69 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE-----KAGKTPQ-------- 69 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHH-----HcCCCHH--------
Confidence 357999999999999999999999999999999999999999999999999999987664 3677753
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
++++++.+.|+++|++||+++| .++.|+|+.|.+.|+++|.+|+++|+||++...++|||.|+++|+|.++.
T Consensus 70 ----e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 70 ----EYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 7899999999999999999988 67889999999999999999999999999999999999999999874321
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
+
T Consensus 142 -------~------------------------------------------------------------------------ 142 (648)
T PRK12267 142 -------D------------------------------------------------------------------------ 142 (648)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHH-HHhcc-CCCeeeeccC-CC
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWR-RWLEA-IRDWCVSRQL-WW 567 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~-~wl~~-l~DWcISRq~-~W 567 (1104)
.|+|+|||.+++++.++|||++++++++++++++ ++....+.|+..++.+. +||++ ++|||||||+ .|
T Consensus 143 ------~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 143 ------GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYY---EENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred ------CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHH---hhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 1679999999999999999999999999999999 54444567999999999 99987 9999999996 79
Q ss_pred cccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC-Chh
Q 001303 568 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDD 646 (1104)
Q Consensus 568 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~-~~d 646 (1104)
|+|||.+ +.+|+||||||+++|++.+|||.. .++
T Consensus 214 GipvP~~---------------------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~ 248 (648)
T PRK12267 214 GIPVPFD---------------------------------------------PKHVVYVWIDALLNYITALGYGSDDDEL 248 (648)
T ss_pred ceECCCC---------------------------------------------CCCEEEEcccchHHHHHHcCCCCCCchH
Confidence 9999941 127999999999999999999863 457
Q ss_pred hhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHh
Q 001303 647 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 726 (1104)
Q Consensus 647 ~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l 726 (1104)
|+.|||.|++++|+||++||.....++-+. .|..||++|++|||+++ +|+|||||+||||+|.++++
T Consensus 249 ~~~~wp~~~~~~GkDii~fH~i~wpa~l~~-~~~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~----------- 315 (648)
T PRK12267 249 FKKFWPADVHLVGKDILRFHAIYWPIMLMA-LGLPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVD----------- 315 (648)
T ss_pred HHhhcccceEEEeeeecchhHHHHHHHHHh-CCCCCCcEEEecceEEE-CCceecccCCcccCHHHHHH-----------
Confidence 999999999999999998644433222111 24568899999999994 69999999999999999998
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH--HHHHHHHHHHHHHHHhhhhCCC
Q 001303 727 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFSMSKLGEG 804 (1104)
Q Consensus 727 ~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~--~r~f~nKl~N~~rf~l~~~~~~ 804 (1104)
.||+|+|||||++.++.++|.+|+++.+.. .+.|+|+|||++.+++..+...
T Consensus 316 --------------------------~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~ 369 (648)
T PRK12267 316 --------------------------RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKY 369 (648)
T ss_pred --------------------------HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 899999999999988999999999999865 3558999999987766544322
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHH
Q 001303 805 FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA 884 (1104)
Q Consensus 805 ~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a 884 (1104)
+..... .....+..|+|++++++++++.+.++|++|+|+.|++.+++|+ ..||+|++..+||....+.......+.+
T Consensus 370 ~~~~~p-~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~ 446 (648)
T PRK12267 370 FDGEIP-APGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATV 446 (648)
T ss_pred cCCcCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHH
Confidence 221110 0123467899999999999999999999999999999999996 5899999999999543221100123345
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 885 QHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 885 ~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
..+++.++..+++||+|||||+||+||+.|+.
T Consensus 447 l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 447 MYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 66777788888999999999999999999986
No 34
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=7.5e-81 Score=772.64 Aligned_cols=493 Identities=15% Similarity=0.213 Sum_probs=407.3
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH-hHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHH
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 247 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~-~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re 247 (1104)
+++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+..+++ .|+++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----~g~~p------ 82 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----ENCTP------ 82 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----cCCCH------
Confidence 45668999999999999999999996 6779999999999999999999999999999988854 57664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccc
Q 001303 248 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 327 (1104)
Q Consensus 248 ~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EV 327 (1104)
++|++++++.++++|++||+++| ++++|++|.|.++|+++|.+|+++|+||++.+.++|||.|+|+|+|..|
T Consensus 83 ------~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 83 ------KEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ------HHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 58999999999999999999888 8889999999999999999999999999999999999999999999766
Q ss_pred cccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCC--CC
Q 001303 328 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF--NG 405 (1104)
Q Consensus 328 e~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~--~~ 405 (1104)
++ .||. |+
T Consensus 155 ~G----------------------------------------------------------------------~CP~~~C~ 164 (801)
T PLN02610 155 EG----------------------------------------------------------------------TCPTEGCN 164 (801)
T ss_pred cC----------------------------------------------------------------------cCCccccC
Confidence 42 2555 33
Q ss_pred CceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcC
Q 001303 406 RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 485 (1104)
Q Consensus 406 ~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g 485 (1104)
. . +.+|..|++||
T Consensus 165 ~----------------------------~----------------~a~Gd~Ce~Cg----------------------- 177 (801)
T PLN02610 165 Y----------------------------D----------------SARGDQCEKCG----------------------- 177 (801)
T ss_pred c----------------------------c----------------ccccchhhhcc-----------------------
Confidence 1 1 12677888998
Q ss_pred CeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHH---HHHHHhc-cCCCeee
Q 001303 486 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA---EWRRWLE-AIRDWCV 561 (1104)
Q Consensus 486 ~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~---~~~~wl~-~l~DWcI 561 (1104)
....+.++..|+|.+||.+++.+.++|||++++.+++.+++++ ++.. +.|....+ .+.+||+ +++||||
T Consensus 178 --~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~---~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~I 250 (801)
T PLN02610 178 --KLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYI---NETS--VAGGWSQNAIQTTNAWLRDGLKPRCI 250 (801)
T ss_pred --ccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHH---HhCC--CCCCcCHHHHHHHHHHHhCCCCCcce
Confidence 2335667788999999999999999999999999999999999 4332 44654444 4558996 5999999
Q ss_pred eccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cC
Q 001303 562 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GW 640 (1104)
Q Consensus 562 SRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~-g~ 640 (1104)
||+..||+|+|. .+ -+..|+|||||+.+.|++.+ +|
T Consensus 251 sR~~~WGipvP~-----~~--------------------------------------~~~~v~YVWfDAl~~Yis~~~~~ 287 (801)
T PLN02610 251 TRDLKWGVPVPL-----EK--------------------------------------YKDKVFYVWFDAPIGYVSITACY 287 (801)
T ss_pred eeecCCcccCCC-----CC--------------------------------------CCCcEEEEehhhHHHHHHHHhhh
Confidence 999999999993 00 02379999999999999987 78
Q ss_pred CCCChhhhhhCCc--C---ccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcc
Q 001303 641 PDDTDDLKAFYPT--S---VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPL 711 (1104)
Q Consensus 641 p~~~~d~~~~~P~--d---~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~ 711 (1104)
.. +|+.|||. + +|+.|+||++| |++++++.+..+ .+| ++|++|||+. .+|+|||||+||||+|.
T Consensus 288 ~~---~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~--~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~ 360 (801)
T PLN02610 288 TP---EWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW--TMM-KTISVTEYLN-YEGGKFSKSKGVGVFGN 360 (801)
T ss_pred hh---HHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc--CCC-CEEEeccCEe-cCCceecCcCCcccCHH
Confidence 53 58889976 6 79999999987 676666544321 134 9999999997 89999999999999999
Q ss_pred ccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCcccccccchHHHHHHH--HHHH
Q 001303 712 EVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCN 788 (1104)
Q Consensus 712 dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~-yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~n 788 (1104)
++++ . ||+|++||||++..+.++|.+|+++.+.... .++|
T Consensus 361 ~~i~-------------------------------------~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n 403 (801)
T PLN02610 361 DAKD-------------------------------------TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLN 403 (801)
T ss_pred HHHh-------------------------------------ccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9998 5 9999999999999999999999999987643 3899
Q ss_pred HHHHHHHHHhhhhC----CCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHH
Q 001303 789 KLWNAVRFSMSKLG----EGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 863 (1104)
Q Consensus 789 Kl~N~~rf~l~~~~----~~~~p~~~-~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yi 863 (1104)
+|+|++.+++..+. +.|..... .........|+|++++++++++.+.++|++|+|+.|++.|++| .++||+||
T Consensus 404 ~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l--~~~~NkYI 481 (801)
T PLN02610 404 NLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSI--SSEGNAYL 481 (801)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHH
Confidence 99998766654443 11221110 0011234679999999999999999999999999999999998 69999999
Q ss_pred Hhhccccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 864 EAIKPYFA-GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 864 e~~K~~l~-~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
+..+||-. .++.. ....+..++..+++.+++||+||||++||+||++|+.
T Consensus 482 e~~kPW~L~k~d~~---~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 482 QESQFWKLYKEDKP---SCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HhcCchhhhCCCHH---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99999943 33222 3334555666688889999999999999999999985
No 35
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-81 Score=715.18 Aligned_cols=722 Identities=21% Similarity=0.288 Sum_probs=558.2
Q ss_pred hhHHHHHHHHHHhcCCcccCCC----CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC
Q 001303 147 SSVEKSWYSWWENSGYFIADNK----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 222 (1104)
Q Consensus 147 ~~iE~~~~~~W~~~~~f~~~~~----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G 222 (1104)
.+||+++|++|+++++|+.+.. +++|+|+++.|.||+||.||+||+++.+-.|+.+-|+||+|++|||++|++|.|
T Consensus 15 ~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG 94 (1080)
T KOG0437|consen 15 LEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG 94 (1080)
T ss_pred HHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC
Confidence 3799999999999999998863 567899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHH---cCCCc----------------------------------------------c--ccCHH---H
Q 001303 223 IATQVVVEKKLMRE---RKLTR----------------------------------------------H--DIGRE---Q 248 (1104)
Q Consensus 223 lp~q~~vek~l~~~---~g~~~----------------------------------------------~--~~~re---~ 248 (1104)
+||-+.+.|. .++ -|.++ . .+.++ +
T Consensus 95 MPI~A~AdKL-krEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~ 173 (1080)
T KOG0437|consen 95 MPIKASADKL-KREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKK 173 (1080)
T ss_pred CccHHhHHHH-HHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhc
Confidence 9997765442 111 01000 0 11222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccc
Q 001303 249 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIE 326 (1104)
Q Consensus 249 f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~E 326 (1104)
|.+ +..|..++.....+++++||..+||+|.+.|+| |.|-.+|+|+|.+|.+.|.|..|+|...|||.+++++-|++
T Consensus 174 F~d-~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 174 FAD-PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred ccC-hhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 444 679999999999999999999999999999986 99999999999999999999999999999999999999998
Q ss_pred cc---ccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccc-------------
Q 001303 327 VD---YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR------------- 390 (1104)
Q Consensus 327 Ve---~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~r------------- 390 (1104)
-. +...++++++++...+..- ..--.+.+.+.+++.||.|||||+|.|+++|+|+...
T Consensus 253 R~sGEgV~PqeytliKle~le~~p------~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi 326 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFP------KALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFI 326 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccch------hhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEE
Confidence 74 3444555666553221100 0000123445789999999999999999999999531
Q ss_pred ----------c------------------ccccCcEeecCCC-CCceeEEecCccccCCCCCCceecCCCCCcchHHHHH
Q 001303 391 ----------Y------------------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGK 441 (1104)
Q Consensus 391 ----------y------------------~~l~G~~~~~P~~-~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~ 441 (1104)
| .+|+|..+..|+. ...+.+++... |..+.|||+|.++|+.+|+||...+
T Consensus 327 ~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT-i~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 327 ATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLT-ILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred eehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeecccee-eeccCCceeEEeCCCCCchhhhHHH
Confidence 2 2577888888885 45566777764 8899999999999999999999874
Q ss_pred H-------hCC-------ccceecCC---------------------------------------CCccccCCCCCCCCC
Q 001303 442 R-------HNL-------EFINIFTD---------------------------------------DGKINSNGGLEFEGM 468 (1104)
Q Consensus 442 ~-------~~L-------~~~~iid~---------------------------------------~G~~~~~~g~~~~Gl 468 (1104)
. ||| ++++||.- +|.|. .| +|.|.
T Consensus 406 dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig-~y~G~ 482 (1080)
T KOG0437|consen 406 DLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IG-KYKGE 482 (1080)
T ss_pred hhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Ee-ccccc
Confidence 3 232 55666642 33332 35 89999
Q ss_pred chhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccch--HHHHHHHhhhccCCCceEEeccccH
Q 001303 469 PRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYT 546 (1104)
Q Consensus 469 ~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~--~~~~~~~~v~~~~~~~i~~~P~~~~ 546 (1104)
++.++++.|...|.+.|.+.... +..-++-+|||+.++.-|++||||++.+ +++.+.+++ .+++.+.+..+
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~--EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cL-----e~l~~f~dEtR 555 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYN--EPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECL-----ENLNTFSDETR 555 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeec--CcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHH-----hhhhccCHHHH
Confidence 99999999999999999887763 3344678999999999999999999975 899999998 67888888899
Q ss_pred HHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCC----CCcccccC-C
Q 001303 547 AEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSG----KKFEMCQD-P 621 (1104)
Q Consensus 547 ~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~l~~d-~ 621 (1104)
+.|..-|+|+..|.+||..+.|++||+ --..--+.++++++|+.+|+++|-..... +++ -++...|- +
T Consensus 556 ~~fE~tLdWL~~wacsRsyGLGTrlPW-D~qyLvESLSDSTIYmAyYTvaHll~~d~------~g~~~~plgi~~~QMtd 628 (1080)
T KOG0437|consen 556 NGFEDTLDWLGQWACSRSYGLGTRLPW-DEQYLVESLSDSTIYMAYYTVAHLLHRDL------YGKVEGPLGIKPDQMTD 628 (1080)
T ss_pred HHHHHHHHHHHhhhhhccccCCCCCCC-cHHHHHHhcchhHHHHHHHHHHHHHHHhh------ccCCcccCCCChhhcCH
Confidence 999999999999999999999999995 11100134677889999999988765422 222 12333343 3
Q ss_pred CceeeEeccCCcccccccCCCC-----ChhhhhhCCcCcccccccccccHHHHHHHHHHhhc--CCCCceEEEEccceeC
Q 001303 622 DVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRD 694 (1104)
Q Consensus 622 dvlDtWFdS~l~p~s~~g~p~~-----~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~--g~~PFk~V~~Hg~v~D 694 (1104)
+|+|.-|--...|- .+..|.+ +.+|++|||.|++++|+|++..+...++....++. ..-| +.|.++|+++
T Consensus 629 eVwdYvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm- 705 (1080)
T KOG0437|consen 629 EVWDYVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM- 705 (1080)
T ss_pred HHHHHhhccCCCCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-
Confidence 57777675444332 2223322 36899999999999999998777666666555553 4567 9999999999
Q ss_pred CCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccc
Q 001303 695 AHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKIN 774 (1104)
Q Consensus 695 ~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~ 774 (1104)
.+++|||||.||+.+..+.|+ ++|||+.|+.|+..+...+|.|
T Consensus 706 LNsEKMSKSTGNfmTL~qaie-------------------------------------KFgad~tRlalAdaGD~veDAN 748 (1080)
T KOG0437|consen 706 LNSEKMSKSTGNFMTLEQAIE-------------------------------------KFGADGTRLALADAGDGVEDAN 748 (1080)
T ss_pred ecchhhccccCCeeeHHHHHH-------------------------------------HhCccceeeeeecccCCcccch
Confidence 999999999999999999998 9999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCC-CCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWILSVLNKAISRTASSLNSYEFSDAAST-VYS 852 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~-~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~-i~~ 852 (1104)
|......+ ++-+|++...++.+...+. + .+... ...+.|+.+.+.+|.++...+++|+...|..|+.. .|+
T Consensus 749 F~ea~AnA---aILRLyt~~ew~eEm~~~~-s---~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd 821 (1080)
T KOG0437|consen 749 FVEANANA---AILRLYTYVEWIEEMCENR-S---SLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYD 821 (1080)
T ss_pred hHHhcccH---HHHHHHHHHHHHHHHHhhH-H---hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 98776544 4557777777775544320 0 01111 23489999999999999999999999999999997 888
Q ss_pred HHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCC
Q 001303 853 WWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYP 932 (1104)
Q Consensus 853 f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP 932 (1104)
| ....|+|-+.+- . -....+++..+++...||+||+||++|.||+.+... ++++...||
T Consensus 822 ~--qaArD~Yrel~g-----~--------~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~~~wP 880 (1080)
T KOG0437|consen 822 L--QAARDMYRELCG-----E--------GMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVNVGWP 880 (1080)
T ss_pred H--HHHHHHHHHHhc-----c--------cccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccC------CceeecCCC
Confidence 8 578899988753 1 123567888899999999999999999999998763 344455999
Q ss_pred CCCCCCCcHHhHHHhHHHHHHHHHH-HHHHHHh
Q 001303 933 SAVEGWTDERAEFEMDLVESTVRCI-RSLRAEV 964 (1104)
Q Consensus 933 ~~~e~~~d~~~e~~~e~i~~ii~~i-Rslr~~~ 964 (1104)
.+++. ++..-..-.++++.+..+ |.+...+
T Consensus 881 ~~s~~--~e~~~~~~~yl~~~l~r~~~~l~~~~ 911 (1080)
T KOG0437|consen 881 FVSPP--DEKLGSSALYLKRTLKRLRAELEKQM 911 (1080)
T ss_pred CCCCH--HHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence 98753 444433334455544444 4444433
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-79 Score=742.99 Aligned_cols=464 Identities=24% Similarity=0.369 Sum_probs=402.2
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
++|+|++|||||||.|||||++++++.|+++||+||+|++|.+++|+|+||.+++..++ +.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~-----~~g~~~---------- 65 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE-----EAGISP---------- 65 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH-----HcCCCH----------
Confidence 36999999999999999999999999999999999999999999999999999876553 457765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
.++++.+...|+++|++||+++| .++.|+++.|...|+++|.+|+++|+||++.+.|+||+.|+|+|++.|+..
T Consensus 66 --~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~-- 139 (511)
T PRK11893 66 --QELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE-- 139 (511)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--
Confidence 37899999999999999999877 567899999999999999999999999999999999999999999854310
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
T Consensus 140 -------------------------------------------------------------------------------- 139 (511)
T PRK11893 140 -------------------------------------------------------------------------------- 139 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeee
Q 001303 412 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 491 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~ 491 (1104)
+
T Consensus 140 --------------------------------------------------~----------------------------- 140 (511)
T PRK11893 140 --------------------------------------------------D----------------------------- 140 (511)
T ss_pred --------------------------------------------------C-----------------------------
Confidence 0
Q ss_pred cccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeec-cCCCcc
Q 001303 492 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSR-QLWWGH 569 (1104)
Q Consensus 492 ~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISR-q~~WG~ 569 (1104)
.|+|+|||++++++.++|||++++.+++.+.+.+ +++...+.|+..++.+.+||++ ++|||||| |++||+
T Consensus 141 -----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 141 -----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELY---EANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 1799999999999999999999999999999998 5333345799999999999984 99999999 999999
Q ss_pred cceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCC----h
Q 001303 570 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT----D 645 (1104)
Q Consensus 570 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~----~ 645 (1104)
|||.+ +.+|+||||||++.|++.+|||.+. +
T Consensus 213 piP~~---------------------------------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~ 247 (511)
T PRK11893 213 PVPGD---------------------------------------------PKHVIYVWFDALTNYLTALGYPDDEELLAE 247 (511)
T ss_pred cCCCC---------------------------------------------CCceEEEEecCcHHHHhHhccccccccchh
Confidence 99941 2279999999999999999998753 3
Q ss_pred hhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHH
Q 001303 646 DLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKR 725 (1104)
Q Consensus 646 d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~ 725 (1104)
+|.+|||.|++++|+||++||....+++...+....| +.+++||||++ +|+|||||+||+|+|.|+++
T Consensus 248 ~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~---------- 315 (511)
T PRK11893 248 LFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVD---------- 315 (511)
T ss_pred HHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHH----------
Confidence 6889999999999999999988888777776656778 99999999995 89999999999999999998
Q ss_pred hhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH--HHHHHHHHHHHHHHhhhhC-
Q 001303 726 LEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSKLG- 802 (1104)
Q Consensus 726 l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~--r~f~nKl~N~~rf~l~~~~- 802 (1104)
+||+|++||||++.++.++|++|+++.+... ..++++++|++..+...+.
T Consensus 316 ---------------------------~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~ 368 (511)
T PRK11893 316 ---------------------------EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK 368 (511)
T ss_pred ---------------------------HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888889999999998653 3488999998764433322
Q ss_pred --CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-CcccHH
Q 001303 803 --EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFAS 879 (1104)
Q Consensus 803 --~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~-~~~~~~ 879 (1104)
+++.|.. ......|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..+|+|++..+||.... +..
T Consensus 369 ~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~--- 439 (511)
T PRK11893 369 NFDGKVPEP----GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPE--- 439 (511)
T ss_pred hcCCCCCCC----cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHH---
Confidence 2233321 13467899999999999999999999999999999999997 67899999999985433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 880 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 880 ~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
..+.+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 440 ~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 440 RLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 4566778888899999999999999999999999985
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=7.2e-78 Score=726.63 Aligned_cols=478 Identities=20% Similarity=0.308 Sum_probs=393.0
Q ss_pred hcCCcccCCC-----CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHH
Q 001303 159 NSGYFIADNK-----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 233 (1104)
Q Consensus 159 ~~~~f~~~~~-----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l 233 (1104)
++.+|.++.+ ..+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||+||+..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~--- 127 (616)
T PLN02224 51 KRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA--- 127 (616)
T ss_pred cceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH---
Confidence 3456655432 23578999999999999999999999999999999999999999999999999999987764
Q ss_pred HHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeee
Q 001303 234 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVN 313 (1104)
Q Consensus 234 ~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~ 313 (1104)
+.|+++ .++++++...+++++++||+++| ++++|++|.|.+.|+++|.+|+++|+||++.++++
T Consensus 128 --~~g~~p------------~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~ 191 (616)
T PLN02224 128 --ANGRNP------------PEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGL 191 (616)
T ss_pred --HcCCCh------------HHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 357664 36788888999999999999666 99999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCcccccc
Q 001303 314 WDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH 393 (1104)
Q Consensus 314 wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~ 393 (1104)
|||+|++.+.+.|+..
T Consensus 192 yc~~ce~f~~~~~l~~---------------------------------------------------------------- 207 (616)
T PLN02224 192 YCVNCEEYKDEKELLE---------------------------------------------------------------- 207 (616)
T ss_pred ecCCCCCCCCHHHHcC----------------------------------------------------------------
Confidence 9999987665422210
Q ss_pred ccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhH
Q 001303 394 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKA 473 (1104)
Q Consensus 394 l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~a 473 (1104)
T Consensus 208 -------------------------------------------------------------------------------- 207 (616)
T PLN02224 208 -------------------------------------------------------------------------------- 207 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHh
Q 001303 474 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 553 (1104)
Q Consensus 474 r~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl 553 (1104)
-+.|..||.+++.+.+++||++++++++.+.+.+ .+..-.+.|+..++.+.+||
T Consensus 208 -----------------------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~---~~~~~~~~p~~~~~~~~~~l 261 (616)
T PLN02224 208 -----------------------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWI 261 (616)
T ss_pred -----------------------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHH
Confidence 0236667899999999999999999999999998 43333467998999999999
Q ss_pred cc-CCCeeeeccC-CCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccC
Q 001303 554 EA-IRDWCVSRQL-WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSG 631 (1104)
Q Consensus 554 ~~-l~DWcISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~ 631 (1104)
++ |+||||||.+ .||+|+|.. +..|++||||+.
T Consensus 262 ~~gL~d~~ISR~~~~WGIpvP~~---------------------------------------------~~~viYVWfDAl 296 (616)
T PLN02224 262 KSGLRDFSISRALVDWGIPVPDD---------------------------------------------DKQTIYVWFDAL 296 (616)
T ss_pred hcCCCCccccCCCCCCceECCCC---------------------------------------------CCcEEEEehhhH
Confidence 85 9999999986 799999930 237999999999
Q ss_pred CcccccccCCCCCh----hhhhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccccc
Q 001303 632 LFPLSVLGWPDDTD----DLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 703 (1104)
Q Consensus 632 l~p~s~~g~p~~~~----d~~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 703 (1104)
+.|++.++++.+.. .+..|||.++++.|+||++| |+++++++++ ..| +.|++||++. .+|+|||||
T Consensus 297 ~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~----~~P-~~i~~~g~l~-~eG~KMSKS 370 (616)
T PLN02224 297 LGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL----ELP-KMVFGHGFLT-KDGMKMGKS 370 (616)
T ss_pred HHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC----CCC-cEEEecccEe-cCCcccccc
Confidence 99999998765321 24568999999999999997 8776554432 335 9999999974 999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH
Q 001303 704 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 783 (1104)
Q Consensus 704 ~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~ 783 (1104)
+||+|+|.++++ .||+|++||||++.++.++|.+|+++.+...
T Consensus 371 ~GN~i~p~e~l~-------------------------------------~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~ 413 (616)
T PLN02224 371 LGNTLEPFELVQ-------------------------------------KFGPDAVRYFFLREVEFGNDGDYSEDRFIKI 413 (616)
T ss_pred CCccCCHHHHHH-------------------------------------HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHH
Confidence 999999999998 8999999999999999999999999987543
Q ss_pred --HHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHH
Q 001303 784 --RQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 861 (1104)
Q Consensus 784 --r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~ 861 (1104)
..++|.++|++.+++......+.... .........|+|++++++++++.+.++|++|+|+.|++.+++|+ ..+|+
T Consensus 414 ~NseLan~lgNll~R~l~~~~k~~~~~~-~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~ 490 (616)
T PLN02224 414 VNAHLANTIGNLLNRTLGLLKKNCESTL-VEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNT 490 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcC-CCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHH
Confidence 45999999998776654432221110 00012245689999999999999999999999999999999995 89999
Q ss_pred HHHhhcccccC-CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 862 FIEAIKPYFAG-DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 862 Yie~~K~~l~~-~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
|++..+||... ++.........+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 491 Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 491 YMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 99999999422 21110002234566788899999999999999999999999985
No 38
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-77 Score=703.64 Aligned_cols=489 Identities=25% Similarity=0.384 Sum_probs=421.5
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
.++|+|++|+|||||.|||||+++++.+||++||+||+|++|+|++|+|.||.||+..+++ +|++|+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-----~g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-----EGITPQ-------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-----cCCCHH--------
Confidence 4689999999999999999999999999999999999999999999999999999998864 688875
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
+++++++..+++.++.|+||+| .+.+|+++.|.+.|+++|.+|+++|+||.+...+.||++|++.|.|.+|+.
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g- 143 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG- 143 (558)
T ss_pred ----HHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec-
Confidence 7899999999999999999999 888899999999999999999999999999999999999999999988863
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
+||.||..
T Consensus 144 ---------------------------------------------------------------------~cp~cg~~--- 151 (558)
T COG0143 144 ---------------------------------------------------------------------TCPKCGGE--- 151 (558)
T ss_pred ---------------------------------------------------------------------cCCCcCcc---
Confidence 25555421
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
+..|.-|++|| ...
T Consensus 152 -----------------------------------------~arGD~Ce~Cg-------------------------~~~ 165 (558)
T COG0143 152 -----------------------------------------DARGDQCENCG-------------------------RTL 165 (558)
T ss_pred -----------------------------------------ccCcchhhhcc-------------------------CcC
Confidence 01566688898 233
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeec-cCCCc
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSR-QLWWG 568 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISR-q~~WG 568 (1104)
.+....-|+|++||...|.+.+++||++++.+.+.+++++ ++..-.+.|.+.++.+.+||++ ++|||||| ...||
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~---~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWY---ESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHH---HhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 4555567999999999999999999999999999999999 6655678999999999999975 99999999 89999
Q ss_pred ccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC---CCh
Q 001303 569 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD---DTD 645 (1104)
Q Consensus 569 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~---~~~ 645 (1104)
+|||. . ...|++||||+.+.|++.++... +..
T Consensus 243 ipvP~----~-----------------------------------------p~kv~YVWfDAligYisa~~~~~~~~~~~ 277 (558)
T COG0143 243 IPVPG----D-----------------------------------------PGKVIYVWFDALIGYISALGELAEIGDDE 277 (558)
T ss_pred ccCCC----C-----------------------------------------CCCEEEEeeccHHHHHHHhcchhccCChH
Confidence 99992 0 12699999999999999998764 557
Q ss_pred hhhhhCCcC----ccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccccccc
Q 001303 646 DLKAFYPTS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 717 (1104)
Q Consensus 646 d~~~~~P~d----~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~ 717 (1104)
+|+.|||.+ +|+.|+||++| |+++++..+.. +| +.|+.||+++ .+|+|||||+||||||.++++
T Consensus 278 ~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~-- 349 (558)
T COG0143 278 DFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLE-- 349 (558)
T ss_pred HHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC----CC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHH--
Confidence 899999998 99999999986 88887776655 46 9999999998 899999999999999999998
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHHHHHHHHHH
Q 001303 718 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVR 795 (1104)
Q Consensus 718 ~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~nKl~N~~r 795 (1104)
.||+|+|||||+...+.++|.+|+++.+.... .+.|++.|.+.
T Consensus 350 -----------------------------------~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~ 394 (558)
T COG0143 350 -----------------------------------QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLAN 394 (558)
T ss_pred -----------------------------------HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998754 48999999988
Q ss_pred HHhhhhCCCC---CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccC
Q 001303 796 FSMSKLGEGF---VPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 872 (1104)
Q Consensus 796 f~l~~~~~~~---~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~ 872 (1104)
.+++.....| .|... . ... ..|+.++.....+...+.++|++++|++|+..|++++ ..+|.||+..+||...
T Consensus 395 R~~~fi~k~~~g~vp~~~-~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~ 469 (558)
T COG0143 395 RTLGFINKYFDGVVPAAG-A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLA 469 (558)
T ss_pred HHHHHHHhccCCcCCccc-c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhcCCCchhh
Confidence 7776443333 33221 1 123 6889999999999999999999999999999999995 8999999999999543
Q ss_pred CCcccHHHHHHH---HHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCC
Q 001303 873 DNPAFASERSAA---QHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 917 (1104)
Q Consensus 873 ~~~~~~~~r~~a---~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~ 917 (1104)
.+. .+..+ ..++..+++.+..||+||||..|++||+.|+..
T Consensus 470 k~~----~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 470 KED----KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred ccC----cHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 321 22333 444445566778899999999999999999864
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.4e-76 Score=677.68 Aligned_cols=338 Identities=34% Similarity=0.637 Sum_probs=310.5
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
++|+|++|||||||.||||||++++++|+++||+||+||+|++++||||||+|||.++++++.......+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999875322223457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
.|++|++++.+.+.++|++||+++||+++++|+++.|.+.|+++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999987776
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeee
Q 001303 412 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 491 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~ 491 (1104)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccc
Q 001303 492 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 571 (1104)
Q Consensus 492 ~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pI 571 (1104)
++++++++|||++++++++.+++.+ ++++|+|+..++.+.+||++++|||||||++||+||
T Consensus 144 --------------~v~~~~~~qwf~~l~~~~~~l~~~~-----~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~ 204 (338)
T cd00818 144 --------------PLIYRATPQWFIRVTKIKDRLLEAN-----DKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPI 204 (338)
T ss_pred --------------EEEEEecCeEEEEcHHHHHHHHHHH-----hcCcEECHHHHHHHHHHHhcchhcceeeecccCcee
Confidence 1234567899999999999999999 458899999999999999999999999999999999
Q ss_pred eEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhC
Q 001303 572 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 651 (1104)
Q Consensus 572 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~ 651 (1104)
|+|+|..|+ ... +.++++|+||||||+++|++.++||.++.+|++||
T Consensus 205 P~~~~~~~~-----------~~~----------------------~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~ 251 (338)
T cd00818 205 PVWYCEDCG-----------EVL----------------------VRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELF 251 (338)
T ss_pred eEEEecCCC-----------eEE----------------------EecCCceEEEEEeCCCCHHHHcCCCCcchhhhccC
Confidence 999986542 111 14678999999999999999999998777899999
Q ss_pred CcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001303 652 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 731 (1104)
Q Consensus 652 P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l 731 (1104)
|+|++++|+||+++|+.++++.++.+.+..||++|++||++++.+|+|||||+||+|+|.|+++
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~---------------- 315 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD---------------- 315 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH----------------
Confidence 9999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001303 732 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 775 (1104)
Q Consensus 732 ~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f 775 (1104)
+||+|++||||++.++.++|++|
T Consensus 316 ---------------------~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 316 ---------------------KYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ---------------------HcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999876
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.7e-66 Score=590.30 Aligned_cols=312 Identities=39% Similarity=0.704 Sum_probs=289.1
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
+|+|++|||||||.||||||++++++|+++||+||+||+|++++||||||+||+.++++.+ +.......+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~----~~~~~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG----GRKKKTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc----CcccccccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998764 333445558999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccccc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 332 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~ 332 (1104)
|++|++++.+.|+++|++||+++||++++.|++|.|.+.|+++|.+|+++|+||++.++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------- 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV-------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee--------------------
Confidence 999999999999999999999999999999999999999999999999999999987433
Q ss_pred CcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEe
Q 001303 333 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 412 (1104)
Q Consensus 333 ~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~ 412 (1104)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeec
Q 001303 413 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 492 (1104)
Q Consensus 413 d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~ 492 (1104)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccce
Q 001303 493 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIP 572 (1104)
Q Consensus 493 ~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP 572 (1104)
+..+|||++++++++++++.+ + ...+.|+..++.+.+||++..|||||||++||+|+|
T Consensus 137 -----------------~~~~~~f~~~~~l~~~~~~~~---~--~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P 194 (312)
T cd00668 137 -----------------RITEQWFFDMPKFKEKLLKAL---R--RGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP 194 (312)
T ss_pred -----------------EeeeeEEEEcHHHHHHHHHHH---h--cCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC
Confidence 124589999999999999998 4 344899999999999999988999999999999999
Q ss_pred EEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhhCC
Q 001303 573 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYP 652 (1104)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P 652 (1104)
- +|+||||||+++|+++++|+.++.+|+.+||
T Consensus 195 ~------------------------------------------------~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd00668 195 E------------------------------------------------DVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP 226 (312)
T ss_pred c------------------------------------------------ccccchhhccHHHHHHcCCCccchhhhhcCC
Confidence 2 6899999999999999999887778999999
Q ss_pred cCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCC
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 732 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~ 732 (1104)
.|++++|+||+|+|+.++++++..+.+..||+++++||+|++.+|+|||||+||+|+|.|+++
T Consensus 227 ~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~----------------- 289 (312)
T cd00668 227 ADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE----------------- 289 (312)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-----------------
Confidence 999999999999999999999999888888999999999998888999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001303 733 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 775 (1104)
Q Consensus 733 ~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f 775 (1104)
+||+|++||||++.++.++|++|
T Consensus 290 --------------------~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 290 --------------------KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred --------------------HcCcHHHHHHHHhcCCccCCCCC
Confidence 89999999999999989999876
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-64 Score=546.20 Aligned_cols=475 Identities=23% Similarity=0.358 Sum_probs=392.8
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
.+.|++++|..|||..+||||+++.+++|+++||+|++|..|.|..|+|+||+.||.+++. .|.+|.
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----nG~~P~-------- 104 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----NGRNPP-------- 104 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----cCCChH--------
Confidence 4589999999999999999999999999999999999999999999999999999998864 577654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
+.++.....+.+.++.+|++++ ++.+|+||.|...|++.+.++.++|+||++.+..+||.+|+|++.+.+|...
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 6677888888999999999998 9999999999999999999999999999999999999999999998776421
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
...
T Consensus 179 p~~----------------------------------------------------------------------------- 181 (578)
T KOG0436|consen 179 PCP----------------------------------------------------------------------------- 181 (578)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
+...|.|
T Consensus 182 --~gk~vsm----------------------------------------------------------------------- 188 (578)
T KOG0436|consen 182 --PGKVVSM----------------------------------------------------------------------- 188 (578)
T ss_pred --CCceeee-----------------------------------------------------------------------
Confidence 0001222
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeec--c-CC
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--Q-LW 566 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--q-~~ 566 (1104)
-||.+|..+..+.+|++++.+.+++.+.+ +.+.--+.|+...+....||+ +++|..||| + +.
T Consensus 189 -----------Esg~~vv~~kE~NY~FrLSkfqk~l~d~l---rkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~ 254 (578)
T KOG0436|consen 189 -----------ESGNPVVWRKEDNYFFRLSKFQKPLEDHL---RKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLD 254 (578)
T ss_pred -----------ccCCceeEecccceeeeHHhhhhHHHHHH---hcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcc
Confidence 25667777778899999999999999999 655556789999999999997 599999999 3 89
Q ss_pred CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC---
Q 001303 567 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD--- 643 (1104)
Q Consensus 567 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~--- 643 (1104)
||+|+|. | +.++++||||+.+.|++++|+|.+
T Consensus 255 WGIPvP~------d---------------------------------------dsQtIYVWfDAL~nYiSvig~~~~~~N 289 (578)
T KOG0436|consen 255 WGIPVPG------D---------------------------------------DSQTIYVWFDALLNYISVIGYPNKQQN 289 (578)
T ss_pred cCCCCCC------C---------------------------------------CcceEEEeHHHHhhHHHhhcCCchhcc
Confidence 9999992 1 347999999999999999999963
Q ss_pred -ChhhhhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccC
Q 001303 644 -TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGIS 718 (1104)
Q Consensus 644 -~~d~~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~ 718 (1104)
...+..+||+++|++|+||++| |++++|+.|+.+ | +.|++||++. .+|.|||||+||||||.++++
T Consensus 290 ~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~--- 360 (578)
T KOG0436|consen 290 LKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQ--- 360 (578)
T ss_pred ccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHH---
Confidence 2457789999999999999986 999999888763 5 9999999998 999999999999999999998
Q ss_pred chhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHHHHHHHHHHH
Q 001303 719 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRF 796 (1104)
Q Consensus 719 l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~nKl~N~~rf 796 (1104)
.||+|++||||+..+..+.|.+|+++++.... .+.++|.|++..
T Consensus 361 ----------------------------------kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnR 406 (578)
T KOG0436|consen 361 ----------------------------------KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNR 406 (578)
T ss_pred ----------------------------------HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654 588999999887
Q ss_pred Hhhh-hC-CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCC
Q 001303 797 SMSK-LG-EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN 874 (1104)
Q Consensus 797 ~l~~-~~-~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~ 874 (1104)
+.++ +. .+..+....+.......+.-+.+.++++.+.+.+.|++|.+..|++++.+.+ .-.|.|++..+||....+
T Consensus 407 c~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~--n~~ntlvq~~aPWkl~~d 484 (578)
T KOG0436|consen 407 CLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG--NAGNTLVQQRAPWKLFKD 484 (578)
T ss_pred HhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHH--HhhhhhhhhcCCceeccc
Confidence 7653 11 1100110000001123344578899999999999999999999999999875 678999999999954332
Q ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCC
Q 001303 875 P-AFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPK 918 (1104)
Q Consensus 875 ~-~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~ 918 (1104)
+ ...........++..||+.+..||+|+||.++.+|+.+|+-..
T Consensus 485 sq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk 529 (578)
T KOG0436|consen 485 SQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSK 529 (578)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCCh
Confidence 2 1001222334455678888899999999999999999998753
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.5e-62 Score=568.07 Aligned_cols=374 Identities=26% Similarity=0.434 Sum_probs=299.6
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 253 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~ 253 (1104)
|+|++|+|||||.|||||+.+++.+|+++||+||+|++|+++.|+|+||++++.++++ .|+++.
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----~g~~p~----------- 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----QGIDPE----------- 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----TTS-HH-----------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----cCCCHH-----------
Confidence 7999999999999999999999999999999999999999999999999999988864 577654
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccC
Q 001303 254 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 333 (1104)
Q Consensus 254 ~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~ 333 (1104)
+++++++..|++.|++|||++| ++..|.|+.|.++|+++|.+|+++|+||++...++||+.|+++|+|.+|++
T Consensus 65 -~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g---- 137 (391)
T PF09334_consen 65 -EFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEG---- 137 (391)
T ss_dssp -HHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETC----
T ss_pred -HHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeec----
Confidence 7899999999999999999999 788899999999999999999999999999999999999999999988753
Q ss_pred cceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEec
Q 001303 334 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 413 (1104)
Q Consensus 334 ~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d 413 (1104)
.||.|+..
T Consensus 138 ------------------------------------------------------------------~CP~C~~~------ 145 (391)
T PF09334_consen 138 ------------------------------------------------------------------TCPYCGSD------ 145 (391)
T ss_dssp ------------------------------------------------------------------EETTT--S------
T ss_pred ------------------------------------------------------------------cccCcCcc------
Confidence 25665411
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecc
Q 001303 414 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 493 (1104)
Q Consensus 414 ~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~ 493 (1104)
...|..|++|| ...++.
T Consensus 146 --------------------------------------~a~g~~Ce~cG-------------------------~~~~~~ 162 (391)
T PF09334_consen 146 --------------------------------------KARGDQCENCG-------------------------RPLEPE 162 (391)
T ss_dssp --------------------------------------SCTTTEETTTS-------------------------SBEECC
T ss_pred --------------------------------------ccCCCcccCCC-------------------------CCcccc
Confidence 12566788888 344566
Q ss_pred cccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeccCCCcccce
Q 001303 494 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLWWGHQIP 572 (1104)
Q Consensus 494 ~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP 572 (1104)
+..-|+|..||.+++.+..++||++++++++.+.+.+ ++... +.|+..++...+||++ ++||||||...||+|+|
T Consensus 163 ~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l---~~~~~-~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 163 ELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWL---ESNPD-FPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHH---HHSTT-SSHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred cccCCccccccccCccccceEEEEehHHhHHHHHHHH---hcCCC-CCChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 7778999999999999999999999999999999998 33221 2677778888899986 99999999999999999
Q ss_pred EEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCC----CChhhh
Q 001303 573 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD----DTDDLK 648 (1104)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~----~~~d~~ 648 (1104)
. + +..|++||||+.+.|++.++++. +..++.
T Consensus 239 ~------~---------------------------------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~ 273 (391)
T PF09334_consen 239 G------D---------------------------------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFK 273 (391)
T ss_dssp T------E---------------------------------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHH
T ss_pred c------c---------------------------------------CCceEEEcchHHHHHHHHhccccccccccchhh
Confidence 2 0 12699999999999999998865 456788
Q ss_pred hhCC-----cCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCc
Q 001303 649 AFYP-----TSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 719 (1104)
Q Consensus 649 ~~~P-----~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l 719 (1104)
.||+ ..+++.|+||++| |++.+++.++ .+| +.+++||+++ .+|+|||||+||+|+|.++++
T Consensus 274 ~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~----~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~---- 343 (391)
T PF09334_consen 274 KWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL----PLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLE---- 343 (391)
T ss_dssp HHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEEEEE--EE-ETTCCEETTTTESSBHHHHHH----
T ss_pred hhccccCCceEEEEEccchhHHHHHHhHHHHhcccC----CCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHH----
Confidence 8882 2399999999987 6665555333 345 9999999999 899999999999999999998
Q ss_pred hhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHHHHHHHHHHHH
Q 001303 720 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFS 797 (1104)
Q Consensus 720 ~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~nKl~N~~rf~ 797 (1104)
+||+|++||||++.++.++|.+|+++.+.... .+.|++.|++.++
T Consensus 344 ---------------------------------~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 344 ---------------------------------EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp ---------------------------------HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ---------------------------------hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 89999999999999999999999999987643 3778888887654
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=9.7e-60 Score=535.89 Aligned_cols=309 Identities=27% Similarity=0.423 Sum_probs=273.3
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
+|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..+++ .|+++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-----cCCCH-----------
Confidence 58999999999999999999999999999999999999999999999999999888864 57665
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccccc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 332 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~ 332 (1104)
.++++.+.+.|++++++||+++| .+++|+++.|...|+++|.+|+++|+||++...++|||.|+++|+
T Consensus 65 -~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 65 -QELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 37889999999999999999877 677899999999999999999999999999999999999987765
Q ss_pred CcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEe
Q 001303 333 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 412 (1104)
Q Consensus 333 ~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~ 412 (1104)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeec
Q 001303 413 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 492 (1104)
Q Consensus 413 d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~ 492 (1104)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeccC-CCccc
Q 001303 493 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQL-WWGHQ 570 (1104)
Q Consensus 493 ~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRq~-~WG~p 570 (1104)
+++.++|||++++++++.+++.+ +++...+.|+..++.+.+||++ ++|||||||+ +||+|
T Consensus 133 ---------------e~~~~~~~ff~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ---------------EWREEEHYFFRLSKFQDRLLEWL---EKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ---------------EEEeeeeEEEEhHHHHHHHHHHH---HhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 12334689999999999999998 6555568899999999999997 9999999999 99999
Q ss_pred ceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCCh----h
Q 001303 571 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD----D 646 (1104)
Q Consensus 571 IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~----d 646 (1104)
+|. + +.+|++|||||.+.|++.++++.... .
T Consensus 195 vp~------~---------------------------------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~ 229 (319)
T cd00814 195 VPL------D---------------------------------------PGKVIYVWFDALIGYISATGYYNEEWGNSWW 229 (319)
T ss_pred CCC------C---------------------------------------CCcEEEEehhhHHHHHHHcccccccccchhh
Confidence 994 0 12799999999999999999875432 3
Q ss_pred hhhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhH
Q 001303 647 LKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 722 (1104)
Q Consensus 647 ~~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l 722 (1104)
+...+|.+++++|+||++| |++.+++ .|..|++.+++||+++ .+|+|||||+||+|+|.++++
T Consensus 230 ~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~-----~~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~------- 296 (319)
T cd00814 230 WKDGWPELVHFIGKDIIRFHAIYWPAMLLG-----AGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLE------- 296 (319)
T ss_pred hhcCCCceEEEEeechhhhhHHHHHHHHHh-----CCCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHH-------
Confidence 5567899999999999997 5553332 2345679999999999 569999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCccccccc
Q 001303 723 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 775 (1104)
Q Consensus 723 ~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f 775 (1104)
.||+|++||||++.++.++|.||
T Consensus 297 ------------------------------~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 297 ------------------------------RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred ------------------------------HcCchHHHHHHHhcCCCCCCCCC
Confidence 89999999999999999999987
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3e-55 Score=497.49 Aligned_cols=296 Identities=29% Similarity=0.484 Sum_probs=256.2
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
+|+|++|||||||.+||||+++++++|+++||+||+|++|++++|+|+||+|++..+++ .|.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-----~g~~------------ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-----IGRD------------ 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-----cCCC------------
Confidence 69999999999999999999999999999999999999999999999999999887764 3553
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccccc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 332 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~ 332 (1104)
|.+|++++.+.++++|++||+++||.+++.|++|.|.++|+++|.+|+++|+||++..+|+|| +
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~-----------~----- 127 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC-----------K----- 127 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------C-----
Confidence 569999999999999999999999999999999999999999999999999999999999888 0
Q ss_pred CcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEe
Q 001303 333 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 412 (1104)
Q Consensus 333 ~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~ 412 (1104)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeec
Q 001303 413 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 492 (1104)
Q Consensus 413 d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~ 492 (1104)
T Consensus 128 -------------------------------------------------------------------------------- 127 (314)
T cd00812 128 -------------------------------------------------------------------------------- 127 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCeeeecccccccccc--chHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCccc
Q 001303 493 NEMRLGLCSRSNDVVEPMIKPQWYVNC--NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 570 (1104)
Q Consensus 493 ~~~~~p~c~Rs~~~ie~~~~~QWFl~~--~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~p 570 (1104)
.++|||+++ +++++.+.+++ + .+.+.|+..++.+.+||+ ||||++||+|
T Consensus 128 ------------------~~~~~f~~l~~~~~~~~l~~~l---~--~~~~~p~~~~~~~~~~l~------isR~~~wGip 178 (314)
T cd00812 128 ------------------LLDQWFLKYSETEWKEKLLKDL---E--KLDGWPEEVRAMQENWIG------CSRQRYWGTP 178 (314)
T ss_pred ------------------ccceEEEEcCcHHHHHHHHHHH---H--hcCcCCHHHHHHHHHHhe------eeeecCCcCC
Confidence 125899999 89999999999 4 345799999999999997 9999999999
Q ss_pred ceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc---cCCC-----
Q 001303 571 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL---GWPD----- 642 (1104)
Q Consensus 571 IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~---g~p~----- 642 (1104)
+|. .+|+|+||||.++++.++ ....
T Consensus 179 vP~-----------------------------------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~ 211 (314)
T cd00812 179 IPW-----------------------------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGD 211 (314)
T ss_pred cCc-----------------------------------------------ccccccccccHHHHHHHHhcccccCcchhh
Confidence 993 168999999998554333 2111
Q ss_pred ---CChhhhhhCCcCcccccccccccHHHHHHHHHHhh--cC---CCCceEEEEccceeCCCCccccccCCCccCccccc
Q 001303 643 ---DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKL--GG---EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 714 (1104)
Q Consensus 643 ---~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l--~g---~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii 714 (1104)
..++|++|||.|++++|+||++||...+++....+ .| ..|++++++||+|+ .+|+|||||+||+|+|.|++
T Consensus 212 ~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll 290 (314)
T cd00812 212 LEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAI 290 (314)
T ss_pred hhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHH
Confidence 23468999999999999999988864444333333 23 24679999999999 68999999999999999999
Q ss_pred cccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccch
Q 001303 715 NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 777 (1104)
Q Consensus 715 ~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~ 777 (1104)
+ ++|+|++||||++.++ .|++|++
T Consensus 291 ~-------------------------------------~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 291 K-------------------------------------KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred H-------------------------------------HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 9 8999999999998877 6888864
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-46 Score=404.48 Aligned_cols=496 Identities=18% Similarity=0.232 Sum_probs=379.7
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH-hHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHH
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 247 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~-~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re 247 (1104)
.++..-+|+...||+|..+|+|+... ...+||++||.+.+|++.++++|+|+.|.+++..+ -++|.+|+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka-----leeg~tP~----- 80 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA-----LEEGLTPQ----- 80 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH-----HHccCCHH-----
Confidence 35567899999999999999999876 55699999999999999999999999999998765 35788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccc
Q 001303 248 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 327 (1104)
Q Consensus 248 ~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EV 327 (1104)
+.+++|+...+....-+++++| .+-+|+.+...+.+|.+|.+||++|+.-...-.+.||..|++.|+|..|
T Consensus 81 -------elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 81 -------ELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred -------HHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 6789999999999999998888 6667999999999999999999999999999999999999999999777
Q ss_pred cccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCc
Q 001303 328 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRK 407 (1104)
Q Consensus 328 e~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ 407 (1104)
+. .||+||..
T Consensus 152 eg----------------------------------------------------------------------~cp~C~yd 161 (567)
T KOG1247|consen 152 EG----------------------------------------------------------------------KCPFCGYD 161 (567)
T ss_pred hc----------------------------------------------------------------------cCCCCCCc
Confidence 53 36666531
Q ss_pred eeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCe
Q 001303 408 IPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLY 487 (1104)
Q Consensus 408 ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l 487 (1104)
|..|..|++|| .
T Consensus 162 --------------------------------------------~ARGDqcd~cG-~----------------------- 173 (567)
T KOG1247|consen 162 --------------------------------------------DARGDQCDKCG-K----------------------- 173 (567)
T ss_pred --------------------------------------------cccchhhhhhh-h-----------------------
Confidence 12677888888 1
Q ss_pred eeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeccCC
Q 001303 488 RGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLW 566 (1104)
Q Consensus 488 ~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq~~ 566 (1104)
.....+...|.|.-|....+++-+.+-|+.++.+.+++.+++. ++..-.-...+..+....||. +++..||||.+-
T Consensus 174 -l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~--~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLk 250 (567)
T KOG1247|consen 174 -LVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLR--RTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLK 250 (567)
T ss_pred -hcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHH--hccccCCCccchHHHHHHHHHccccccccccccc
Confidence 1123345569999999999999999999999999999998881 222111245567788899996 699999999999
Q ss_pred CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChh
Q 001303 567 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 646 (1104)
Q Consensus 567 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d 646 (1104)
||+|+|. + +| ...||+||||+.+.|+|.+. +-+++
T Consensus 251 WGtpVPl-----e-----------------------------~f---------k~KVfYVWFDA~IGYlsit~--~yt~e 285 (567)
T KOG1247|consen 251 WGTPVPL-----E-----------------------------KF---------KDKVFYVWFDAPIGYLSITK--NYTDE 285 (567)
T ss_pred cCCCcCh-----h-----------------------------hh---------cccEEEEEEcCcceEEEeeh--hhhHH
Confidence 9999994 0 01 23799999999999888764 23578
Q ss_pred hhhhCC--cC---cccccccccccHHHHHHHHHHhhcCCCC-ceEEEEccceeCCCCccccccCCCccCccccccccCch
Q 001303 647 LKAFYP--TS---VLETGHDILFFWVARMVMLGIKLGGEVP-FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 720 (1104)
Q Consensus 647 ~~~~~P--~d---~~~~G~Dil~fW~arm~~~~~~l~g~~P-Fk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~ 720 (1104)
|++||- .. +.+.|+|.+-|+-..+-.+-+.-..+-+ -+++-..-++ .-+..|+|||+|.+|-..++.++
T Consensus 286 w~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSKSrgvGvFG~~aqd~---- 360 (567)
T KOG1247|consen 286 WEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYL-NYEDGKFSKSRGVGVFGNDAQDT---- 360 (567)
T ss_pred HHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhh-ccccCcccccccccccccccccC----
Confidence 889984 32 4557888877654433332222222222 1222223333 24556999999999999988773
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH--HHHHHHHHHHHHHHHh
Q 001303 721 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFSM 798 (1104)
Q Consensus 721 ~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~--~r~f~nKl~N~~rf~l 798 (1104)
..++|+.||||++..+.+.|.+|+++.+.. ...++|.|.|++..++
T Consensus 361 --------------------------------gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l 408 (567)
T KOG1247|consen 361 --------------------------------GIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVL 408 (567)
T ss_pred --------------------------------CCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998764 4558888888887666
Q ss_pred hhhCCC---CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccc-cCCC
Q 001303 799 SKLGEG---FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF-AGDN 874 (1104)
Q Consensus 799 ~~~~~~---~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l-~~~~ 874 (1104)
+..... ..|.- .++.-|+-++...+.+..++.++||.-.+++|++.+++. ....|.||+..+.+- +..+
T Consensus 409 ~fv~~~~~g~Vp~~-----~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~i--s~~GNqylQ~~~~~k~~~~~ 481 (567)
T KOG1247|consen 409 KFVAAKYNGVVPEM-----ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEI--SRRGNQYLQENTDNKLYEES 481 (567)
T ss_pred HHHHHhhCCcccce-----eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHhcccccchhhhc
Confidence 544332 33322 344558889999999999999999999999999999997 688999999887442 1111
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 875 PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 875 ~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
.. .......+-..++-.+..||+||||.++.+|..+|+.
T Consensus 482 r~---r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 482 RQ---RAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred cc---ccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 11 1111122223344456679999999999999999975
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.1e-41 Score=404.45 Aligned_cols=353 Identities=21% Similarity=0.311 Sum_probs=270.9
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++.++++|.|. |+|.+|||||+++++.|+++||+||+||+|+|+.|+|.+|.+|...++ +.|.+
T Consensus 22 ~~v~~yvcgPt--vy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-----~~g~~--------- 85 (463)
T PRK00260 22 GKVKMYVCGPT--VYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-----EEGES--------- 85 (463)
T ss_pred CcceEEEeCCc--cCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH-----HcCCC---------
Confidence 45577777655 569999999999999999999999999999999999999998866553 35655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 328 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe 328 (1104)
|+++++.+.+.+.++|++||+ +.||... .| .|...+++++.+|+++|++|++..+|+||+..-.
T Consensus 86 ---~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r-~t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~-------- 150 (463)
T PRK00260 86 ---IKELTERYIAAFHEDMDALNVLPPDIEPR-AT---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFP-------- 150 (463)
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCCCCcccc-cc---ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccc--------
Confidence 468999999999999999999 5676432 22 4888899999999999999999999999987321
Q ss_pred ccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCce
Q 001303 329 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 408 (1104)
Q Consensus 329 ~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~i 408 (1104)
.|..|.|.....-..|..
T Consensus 151 -------------------------------------------------------------~yg~ls~~~~~~~~~~~~- 168 (463)
T PRK00260 151 -------------------------------------------------------------DYGKLSGRNLDELQAGAR- 168 (463)
T ss_pred -------------------------------------------------------------ccccCCCCCHHHHhccCc-
Confidence 111111111000000000
Q ss_pred eEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 409 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 409 pIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
|+.+.+ -++|.||.++|+.+ +|
T Consensus 169 --------~~~~~~--------K~~~~DF~Lwk~~~----------------~~-------------------------- 190 (463)
T PRK00260 169 --------VEVAEE--------KRDPLDFALWKAAK----------------PG-------------------------- 190 (463)
T ss_pred --------CCcccC--------CCCccccceecCCC----------------CC--------------------------
Confidence 111111 36778887775321 11
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCc
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 568 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG 568 (1104)
+ .. | .--||
T Consensus 191 ----------------~--------------------------------~~-------------------w----~s~~g 199 (463)
T PRK00260 191 ----------------E--------------------------------PS-------------------W----ESPWG 199 (463)
T ss_pred ----------------C--------------------------------CC-------------------C----CCCCC
Confidence 0 00 0 11356
Q ss_pred ccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhh
Q 001303 569 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 648 (1104)
Q Consensus 569 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~ 648 (1104)
.--|.|+++ |. | +-...+|
T Consensus 200 ~grpgWhie-cs---------------------a------------------------------m~~~~lg--------- 218 (463)
T PRK00260 200 KGRPGWHIE-CS---------------------A------------------------------MSTKYLG--------- 218 (463)
T ss_pred CCCCChhHH-HH---------------------H------------------------------HHHHhcC---------
Confidence 667888763 10 0 0001122
Q ss_pred hhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhc
Q 001303 649 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 728 (1104)
Q Consensus 649 ~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~ 728 (1104)
-|.|++.+|.|++|.|..++++.+..++| .||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 219 --~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~------------- 282 (463)
T PRK00260 219 --ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK------------- 282 (463)
T ss_pred --CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-------------
Confidence 26799999999999999999999999999 89999999988889999999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q 001303 729 GNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP 808 (1104)
Q Consensus 729 ~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~ 808 (1104)
+||+|++||++++ +...++++|+.+.+...+++++++||+++++..
T Consensus 283 ------------------------~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~--------- 328 (463)
T PRK00260 283 ------------------------KYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKALERLYNALAETAL--------- 328 (463)
T ss_pred ------------------------HcCchHhHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 8999999999997 667889999999999999999999999988741
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhHhHHHHHh
Q 001303 809 LKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEA 865 (1104)
Q Consensus 809 ~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~~~~~~n~Yie~ 865 (1104)
...|+|++++++.++..+.++|+ .|+++.|+..|++|+ ...|.|+..
T Consensus 329 --------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv--~~~n~~~~~ 376 (463)
T PRK00260 329 --------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA--REINRALET 376 (463)
T ss_pred --------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHhhc
Confidence 13568999999999999999995 899999999999996 456777653
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.1e-36 Score=371.39 Aligned_cols=379 Identities=18% Similarity=0.263 Sum_probs=280.9
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHH-HCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCC-
Q 001303 163 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPGMDHAGIATQVVVEKKLMRERKLT- 240 (1104)
Q Consensus 163 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~r-m~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~- 240 (1104)
|.+.. .++-.+|+|.|-+| +.+|||||++++..|++.||.| +.||+|.|++|+|.+|-.|...++ +.|++
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~-----~~g~~~ 124 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAR-----EEKLSI 124 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHH-----HhCCCc
Confidence 44432 34458999998888 9999999999999999999999 999999999999999999866664 35765
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCc
Q 001303 241 RHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRT 320 (1104)
Q Consensus 241 ~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~T 320 (1104)
+ +++++.|.+.+.++|++|||..+ ..+.|. .+|...+..++.+|.++|++|.+..-|++|.+.
T Consensus 125 ~------------~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~-- 187 (651)
T PTZ00399 125 F------------LELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA-- 187 (651)
T ss_pred H------------HHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh--
Confidence 3 47888999999999999999887 334344 799999999999999999999987666666541
Q ss_pred ccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEee
Q 001303 321 AISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAI 400 (1104)
Q Consensus 321 aLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~ 400 (1104)
|... ...|..|
T Consensus 188 ----------------------f~~~-----------------------------------------~~~Yg~L------ 198 (651)
T PTZ00399 188 ----------------------FRKA-----------------------------------------GHVYPKL------ 198 (651)
T ss_pred ----------------------cccc-----------------------------------------hhhHHhh------
Confidence 0000 0001111
Q ss_pred cCCCCCceeEEecCccccCCCCCCce-ecC-CCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHH
Q 001303 401 HPFNGRKIPIICDAILVDPKFGTGAV-KIT-PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVN 478 (1104)
Q Consensus 401 ~P~~~~~ipIi~d~~~V~~~~GTG~V-~~~-Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi 478 (1104)
.|-..+. ...+..|.|.+ ... =..++.||.+++... .
T Consensus 199 ~p~~~~~--------~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~k----------------p----------------- 237 (651)
T PTZ00399 199 EPESVAD--------EDRIAEGEGALGKVSGEKRSPNDFALWKASK----------------P----------------- 237 (651)
T ss_pred ChhhcCC--------HHHHhcccCCccccCcCCCCCccHHhhCCCC----------------C-----------------
Confidence 1111110 02222344422 222 245666666663210 0
Q ss_pred HHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCC
Q 001303 479 EALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRD 558 (1104)
Q Consensus 479 ~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~D 558 (1104)
++ |.
T Consensus 238 ---------------------------------------------------------ge----p~--------------- 241 (651)
T PTZ00399 238 ---------------------------------------------------------GE----PS--------------- 241 (651)
T ss_pred ---------------------------------------------------------CC----CC---------------
Confidence 00 00
Q ss_pred eeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc
Q 001303 559 WCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL 638 (1104)
Q Consensus 559 WcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~ 638 (1104)
|- -.||---|.|+++ |- .+-...+
T Consensus 242 W~----SpwG~GrPGWHiE-Cs---------------------------------------------------am~~~~l 265 (651)
T PTZ00399 242 WD----SPWGKGRPGWHIE-CS---------------------------------------------------AMASNIL 265 (651)
T ss_pred CC----CCCCCCCCCchHH-HH---------------------------------------------------HHHHHHc
Confidence 11 2466667888753 20 0001112
Q ss_pred cCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEc-cceeCCCCccccccCCCccCcccccccc
Q 001303 639 GWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGI 717 (1104)
Q Consensus 639 g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKS~GNvIdP~dii~g~ 717 (1104)
| .|.|+|..|.|++|.+.-..++.+.+++|+.||.++++| |||. .+|+|||||+||+|+|.|+++
T Consensus 266 g-----------~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLe-- 331 (651)
T PTZ00399 266 G-----------DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALS-- 331 (651)
T ss_pred C-----------CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHH--
Confidence 2 378999999999999999999999999999999999999 9975 999999999999999999998
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 001303 718 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFS 797 (1104)
Q Consensus 718 ~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~ 797 (1104)
+||+|++||||++. ....|++|+.+.+....+..++++|.+..+
T Consensus 332 -----------------------------------kygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl 375 (651)
T PTZ00399 332 -----------------------------------KYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANV 375 (651)
T ss_pred -----------------------------------HcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999975 888999999999999988889999988776
Q ss_pred hhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhHhHHHHH
Q 001303 798 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIE 864 (1104)
Q Consensus 798 l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yie 864 (1104)
...+.....+. .......|+|++..++.++..+.++| ++|+++.|+..|++|+ ..+|.|++
T Consensus 376 ~s~l~~~~~~~----~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~ 437 (651)
T PTZ00399 376 KIKLRESELTS----PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN 437 (651)
T ss_pred HHHHhhccccc----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence 54443211110 11235679999999999999999999 7899999999999996 56899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1.9e-36 Score=358.93 Aligned_cols=355 Identities=19% Similarity=0.238 Sum_probs=256.6
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCcc
Q 001303 163 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 242 (1104)
Q Consensus 163 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~ 242 (1104)
|.+.. .++.++|+|.| +|+|.+|||||++++..|+++||+|++||+|.++.|+|.+|.+|...++ +.|+++.
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~-----~~g~~~~ 85 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAR-----ENGESVY 85 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHH-----HcCCCHH
Confidence 44433 35567887776 6678999999999999999999999999999999999999999866553 4677653
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc-EeeeecCCCCcc
Q 001303 243 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCVLRTA 321 (1104)
Q Consensus 243 ~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-~~v~wcp~~~Ta 321 (1104)
++++.+.+.+.++|++||++.|+-....| .|...+.++|.+|.++|++|... ..|+||+.+-.
T Consensus 86 ------------e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~- 149 (465)
T TIGR00435 86 ------------EVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK- 149 (465)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-
Confidence 77899999999999999999995333333 78899999999999999999998 89999987521
Q ss_pred cccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeec
Q 001303 322 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 401 (1104)
Q Consensus 322 Lsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~ 401 (1104)
+| |.| .|..+.
T Consensus 150 ------~y--------------------G~l------------------------------------------s~~~~~- 160 (465)
T TIGR00435 150 ------DY--------------------GKL------------------------------------------SKQDLD- 160 (465)
T ss_pred ------hh--------------------ccC------------------------------------------CCCCHH-
Confidence 11 111 110000
Q ss_pred CCCCCceeEEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHH
Q 001303 402 PFNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 480 (1104)
Q Consensus 402 P~~~~~ipIi~d~~~V~~~~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~ 480 (1104)
++.-|.++ -..+ -++|.||.++++
T Consensus 161 ----------------~~~~~~~~-~~~~~K~~p~DF~Lwk~-------------------------------------- 185 (465)
T TIGR00435 161 ----------------QLEAGARV-DVDEAKRNKLDFVLWKS-------------------------------------- 185 (465)
T ss_pred ----------------HHhccccc-CcccccCCCCCceeeCC--------------------------------------
Confidence 00001110 0001 245566655431
Q ss_pred HHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCee
Q 001303 481 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 560 (1104)
Q Consensus 481 L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 560 (1104)
.. .+++ .|
T Consensus 186 -----------------------~~-----------------------------~~~~-------------------~w- 193 (465)
T TIGR00435 186 -----------------------SK-----------------------------EGEP-------------------KW- 193 (465)
T ss_pred -----------------------CC-----------------------------CCCC-------------------CC-
Confidence 10 0111 01
Q ss_pred eeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccC
Q 001303 561 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 640 (1104)
Q Consensus 561 ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~ 640 (1104)
.-.||.--|.||++ |. | +-...+|
T Consensus 194 ---~spwG~grpgWhie-cs---------------------a------------------------------m~~~~lg- 217 (465)
T TIGR00435 194 ---DSPWGKGRPGWHIE-CS---------------------A------------------------------MNDKYLG- 217 (465)
T ss_pred ---cCCCCCCCCCcHhH-HH---------------------H------------------------------HHHHhcC-
Confidence 12488888999864 20 0 0001123
Q ss_pred CCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCch
Q 001303 641 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 720 (1104)
Q Consensus 641 p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~ 720 (1104)
.|.|++.+|.|++|.|....++.+.+++|+ ||.++++|+-+++.+|+|||||+||+|+|.|+++
T Consensus 218 ----------~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~----- 281 (465)
T TIGR00435 218 ----------DQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK----- 281 (465)
T ss_pred ----------CCceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-----
Confidence 267899999999999999999999999985 7788888877777999999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhh
Q 001303 721 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 800 (1104)
Q Consensus 721 ~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~ 800 (1104)
+||+|++|||+++ +...++++|+.+.+.+.++++++|||+++++...
T Consensus 282 --------------------------------~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~ 328 (465)
T TIGR00435 282 --------------------------------NYDPEILRYFLLS-VHYRSPLDFSEELLEAAKNALERLYKALRVLDTT 328 (465)
T ss_pred --------------------------------HCCHHHHHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999997 4678899999999999999999999999987543
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001303 801 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 854 (1104)
Q Consensus 801 ~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~ 854 (1104)
..... .. . ... ......+...+.++| +.+++..|+..|++++
T Consensus 329 ~~~~~--~~--~-~~~-------~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 329 LAYSG--NQ--S-LNK-------FPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred hcccc--cc--c-ccc-------chhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 22100 00 0 000 011234456677777 4599999999999986
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.5e-35 Score=333.09 Aligned_cols=343 Identities=18% Similarity=0.178 Sum_probs=254.5
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
+-++++|.|.|| |.+||||+++++..|++.||+|++||+|.++.|+|.||-+|+..++ ++|+++.
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~-----~~G~~~~-------- 73 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAA-----RDGVDWR-------- 73 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHH-----HcCCCHH--------
Confidence 447899999998 9999999999999999999999999999999999999999987775 3687754
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccE----eeeecCCCCcccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISDI 325 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~----~v~wcp~~~TaLsd~ 325 (1104)
++++.+.+.+.+.|++||+ +.| .+..|++. ...++.++.+|.++|++|.... -|+++...
T Consensus 74 ----e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------- 138 (384)
T PRK12418 74 ----DLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA------- 138 (384)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc-------
Confidence 7899999999999999997 565 56667764 8999999999999999999887 68877652
Q ss_pred cccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCC
Q 001303 326 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 405 (1104)
Q Consensus 326 EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~ 405 (1104)
+|. +|.| .|...
T Consensus 139 --------------~~~------YG~l------------------------------------------s~~~~------ 150 (384)
T PRK12418 139 --------------TPQ------FGYE------------------------------------------SGYDR------ 150 (384)
T ss_pred --------------hhh------cccc------------------------------------------cCCCH------
Confidence 111 1211 11000
Q ss_pred CceeEEecCccccCCC--CCCceec-CC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHH
Q 001303 406 RKIPIICDAILVDPKF--GTGAVKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 481 (1104)
Q Consensus 406 ~~ipIi~d~~~V~~~~--GTG~V~~-~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L 481 (1104)
-++.- |...|-. .+ -.+|.||.++|..
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~-------------------------------------- 181 (384)
T PRK12418 151 -----------ATMLELFAERGGDPDRPGKRDPLDALLWRAA-------------------------------------- 181 (384)
T ss_pred -----------HHHHhhhcccccCcccccCCCcccceeeccC--------------------------------------
Confidence 00000 0000000 01 2456666555321
Q ss_pred HHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeee
Q 001303 482 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 561 (1104)
Q Consensus 482 ~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 561 (1104)
+.+++. |
T Consensus 182 ----------------------------------------------------~~~~~~-------------------w-- 188 (384)
T PRK12418 182 ----------------------------------------------------RPGEPS-------------------W-- 188 (384)
T ss_pred ----------------------------------------------------CCCCCc-------------------c--
Confidence 001111 1
Q ss_pred eccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001303 562 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 641 (1104)
Q Consensus 562 SRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p 641 (1104)
.--||---|.||++ | +.+-...+|
T Consensus 189 --~spwG~GRPGWHiE-C---------------------------------------------------sam~~~~lg-- 212 (384)
T PRK12418 189 --PSPFGPGRPGWHIE-C---------------------------------------------------SAIALNRLG-- 212 (384)
T ss_pred --cCCCCCCCChhHHH-H---------------------------------------------------HHHHHHHcC--
Confidence 23588888988863 1 001111223
Q ss_pred CCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchh
Q 001303 642 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 721 (1104)
Q Consensus 642 ~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~ 721 (1104)
-|.|++.+|.|++|.|...+++.+.+++|+.||.++++||.+++.+|+|||||+||+|+|.++++
T Consensus 213 ---------~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~------ 277 (384)
T PRK12418 213 ---------SGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------ 277 (384)
T ss_pred ---------CCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHh------
Confidence 25689999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch--HHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhh
Q 001303 722 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD--ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMS 799 (1104)
Q Consensus 722 l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaD--alR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~ 799 (1104)
+|.| ++|||++ .+...++++|+.+.+...++.+++++|++...
T Consensus 278 --------------------------------~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~-- 322 (384)
T PRK12418 278 --------------------------------AGVDPAAIRLALL-AGHYRADREWTDAVLAEAEARLARWRAAAALP-- 322 (384)
T ss_pred --------------------------------ccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc--
Confidence 5555 9999998 57888999999999999999999999877421
Q ss_pred hhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhHhHHHHH
Q 001303 800 KLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNS-YEFSDAASTVYSWWQYQFCDVFIE 864 (1104)
Q Consensus 800 ~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~-~~f~~a~~~i~~f~~~~~~n~Yie 864 (1104)
.. . .+..+...+.++|++ +++..|+..|++++ ...|.|+.
T Consensus 323 --~~-------------~--------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~~n~~~~ 363 (384)
T PRK12418 323 --AG-------------P--------DAADVVARVRAALADDLDTPGALAAVDGWA--TDALEGGG 363 (384)
T ss_pred --cc-------------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHHhccC
Confidence 00 0 123456778888855 99999999999986 45666643
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1e-34 Score=333.70 Aligned_cols=338 Identities=17% Similarity=0.167 Sum_probs=249.4
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++-++++|.|.|| +.+||||+++++..|+++||+|+.||+|.|++|+|+||-+|+..++ ++|+++.
T Consensus 35 ~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~-----~~g~t~~------- 100 (411)
T TIGR03447 35 PEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAE-----RDGVDWR------- 100 (411)
T ss_pred CcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHH-----HcCCCHH-------
Confidence 4568999999999 8999999999999999999999999999999999999999977774 3677754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHhcCcEEEccE----eeeecCCCCccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISD 324 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s-~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~----~v~wcp~~~TaLsd 324 (1104)
++++.|...+.+.|++||+. .| .+..|++. ...++++|.+|+++|+||...- -|+++.+.
T Consensus 101 -----ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------ 165 (411)
T TIGR03447 101 -----ELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA------ 165 (411)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc------
Confidence 78899999999999999986 55 45556665 7999999999999999998764 57777541
Q ss_pred ccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCC
Q 001303 325 IEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFN 404 (1104)
Q Consensus 325 ~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~ 404 (1104)
+|. +|. |.|....
T Consensus 166 ---------------~~~------YG~------------------------------------------Ls~~~~~---- 178 (411)
T TIGR03447 166 ---------------TEQ------FGY------------------------------------------ESGYDRA---- 178 (411)
T ss_pred ---------------hhc------ccc------------------------------------------ccCCCHH----
Confidence 111 121 1111000
Q ss_pred CCceeEEecCccccCCCCCCc--eec-CC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHH
Q 001303 405 GRKIPIICDAILVDPKFGTGA--VKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 480 (1104)
Q Consensus 405 ~~~ipIi~d~~~V~~~~GTG~--V~~-~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~ 480 (1104)
++.-|.|. |-. .+ -.+|.||.++|+.+
T Consensus 179 -------------~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------ 209 (411)
T TIGR03447 179 -------------TMLELFAERGGDPDRPGKRDPLDALLWRAAR------------------------------------ 209 (411)
T ss_pred -------------HHHhhhcccccCcccccCCCCcccceeCCCC------------------------------------
Confidence 00000000 000 11 35667776664321
Q ss_pred HHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCee
Q 001303 481 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 560 (1104)
Q Consensus 481 L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 560 (1104)
.+++. |
T Consensus 210 ------------------------------------------------------~~e~~-------------------w- 215 (411)
T TIGR03447 210 ------------------------------------------------------EGEPS-------------------W- 215 (411)
T ss_pred ------------------------------------------------------CCCCC-------------------c-
Confidence 01111 1
Q ss_pred eeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccC
Q 001303 561 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 640 (1104)
Q Consensus 561 ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~ 640 (1104)
.--||.--|.||++ | +.+-...+|
T Consensus 216 ---~spwG~GRPGWHiE-C---------------------------------------------------sam~~~~lg- 239 (411)
T TIGR03447 216 ---DSPFGPGRPGWHIE-C---------------------------------------------------SAIATNRLG- 239 (411)
T ss_pred ---cCCCCCCCChhHHH-H---------------------------------------------------HHHHHHHcC-
Confidence 22588888999864 1 000011122
Q ss_pred CCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCch
Q 001303 641 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 720 (1104)
Q Consensus 641 p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~ 720 (1104)
-+.|++.+|.|++|.|....++.+.+++|+.||.++++|+..++.+|+|||||+||+|+|.++++.
T Consensus 240 ----------~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~---- 305 (411)
T TIGR03447 240 ----------AGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAA---- 305 (411)
T ss_pred ----------CceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhc----
Confidence 135899999999999999999999999999999999999999999999999999999999999760
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhh
Q 001303 721 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 800 (1104)
Q Consensus 721 ~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~ 800 (1104)
.+++|++|||+++ +...++++|+.+.+.+.++.++++++++...
T Consensus 306 --------------------------------g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~--- 349 (411)
T TIGR03447 306 --------------------------------GVDPAAIRLGLLA-GHYRQDRDWTDAVLAEAEARLARWRAALAAT--- 349 (411)
T ss_pred --------------------------------CCCcccEEEEEec-CCCCCCCccCHHHHHHHHHHHHHHHHHHhhc---
Confidence 2788899999984 7788899999999999999999998887421
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001303 801 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 854 (1104)
Q Consensus 801 ~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~ 854 (1104)
.. + .+..+...+.++|+ .+++..|+..|++++
T Consensus 350 -~~---~------------------~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 350 -DA---P------------------DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred -cc---c------------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00 0 12334556667774 599999999999885
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.7e-32 Score=318.90 Aligned_cols=360 Identities=17% Similarity=0.176 Sum_probs=255.7
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEec----------cCCCcCChHHHHHHHHHHHHcCCCcc
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP----------GMDHAGIATQVVVEKKLMRERKLTRH 242 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~----------G~D~~Glp~q~~vek~l~~~~g~~~~ 242 (1104)
..|+|- |+|++.+||||+++++..|++.||+|+.||+|.|+. |+|+||-.|...++ +.|+++.
T Consensus 25 ~mYvCG--pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~-----~~g~~~~ 97 (490)
T PRK14536 25 RLYGCG--PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQ-----EHGKSVL 97 (490)
T ss_pred EEEeeC--CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHH-----HcCCCHH
Confidence 445444 788999999999999999999999999999999996 99999999866553 4677753
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccc
Q 001303 243 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAI 322 (1104)
Q Consensus 243 ~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaL 322 (1104)
++++.|.+.+.+.|++||+..+ .++|..++|...++++|.+|.++|++|.....|+||+..
T Consensus 98 ------------e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~---- 158 (490)
T PRK14536 98 ------------EIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT---- 158 (490)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----
Confidence 7889999999999999999987 344667999999999999999999999999999999851
Q ss_pred ccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecC
Q 001303 323 SDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHP 402 (1104)
Q Consensus 323 sd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P 402 (1104)
+| .|..|.|....
T Consensus 159 -----------------~~------------------------------------------------~YG~Ls~~~~~-- 171 (490)
T PRK14536 159 -----------------FP------------------------------------------------SYGSLASAAVE-- 171 (490)
T ss_pred -----------------cc------------------------------------------------chhhhcCCCHH--
Confidence 11 11122111000
Q ss_pred CCCCceeEEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHH
Q 001303 403 FNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 481 (1104)
Q Consensus 403 ~~~~~ipIi~d~~~V~~~~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L 481 (1104)
++.-|.. |-..+ -++|.||.+++...
T Consensus 172 ---------------~l~~g~~-v~~~~~K~np~DFaLWK~~~------------------------------------- 198 (490)
T PRK14536 172 ---------------DLQAGAR-IEHDTNKRNPHDFVLWFTRS------------------------------------- 198 (490)
T ss_pred ---------------HhhcCCc-CCCCCCCCCchhchhccccc-------------------------------------
Confidence 0000100 00111 34555665553110
Q ss_pred HHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeee
Q 001303 482 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 561 (1104)
Q Consensus 482 ~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 561 (1104)
.+.+.++
T Consensus 199 -------------------------------------------------------------------------~~~~~~~ 205 (490)
T PRK14536 199 -------------------------------------------------------------------------KFENHAL 205 (490)
T ss_pred -------------------------------------------------------------------------CCCCCCC
Confidence 0111223
Q ss_pred eccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCC
Q 001303 562 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 641 (1104)
Q Consensus 562 SRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p 641 (1104)
++.--||...|.|+++ |- .+....+|
T Consensus 206 ~W~SpWG~GRPGWHIE-Cs---------------------------------------------------aMs~~~lg-- 231 (490)
T PRK14536 206 TWDSPWGRGYPGWHIE-CS---------------------------------------------------AMSMKYLG-- 231 (490)
T ss_pred cccCCCCCCCCChHHH-HH---------------------------------------------------HHHHHHcC--
Confidence 4456799999999763 10 00011122
Q ss_pred CCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchh
Q 001303 642 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 721 (1104)
Q Consensus 642 ~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~ 721 (1104)
-..|+|..|.|++|+|.-..++++.+.+|+ ||-++++|+..+..+|+|||||+||+|++.|+++
T Consensus 232 ---------~~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~------ 295 (490)
T PRK14536 232 ---------EQCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQE------ 295 (490)
T ss_pred ---------CceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHh------
Confidence 124899999999999999999999888886 8999999999988999999999999999999998
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhh
Q 001303 722 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 800 (1104)
Q Consensus 722 l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~-yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~ 800 (1104)
+ |+++++||++++ +....+++|+++.+....+-+.+|.|++.-+...
T Consensus 296 -------------------------------~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~ 343 (490)
T PRK14536 296 -------------------------------KGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAARRSLVRRVARVVDA 343 (490)
T ss_pred -------------------------------cCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 999999999998 7788899999999999988888888877654322
Q ss_pred hCCCCCCCCCCCC-CC-CChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001303 801 LGEGFVPPLKLHP-HN-LPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 854 (1104)
Q Consensus 801 ~~~~~~p~~~~~~-~~-~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~ 854 (1104)
.... .+...... .. ....+.-....+..+...+.++|+ .++...|+..|++++
T Consensus 344 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 344 ARAT-TGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred hhcc-cccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2110 00000000 00 000000011234556678888884 599999999999986
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.98 E-value=1.3e-31 Score=317.93 Aligned_cols=362 Identities=17% Similarity=0.188 Sum_probs=260.5
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++-..|+|- |+|.|.+|||||++++..|++.||.|+.||+|.|+.|+|++|-+|...++ +.|+++
T Consensus 79 ~~v~~Y~CG--pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~-----~~g~~~-------- 143 (557)
T PLN02946 79 GKVGMYVCG--VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARAN-----ELGEDP-------- 143 (557)
T ss_pred CceeEEEeC--CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHH-----HcCCCH--------
Confidence 344566664 77889999999999999999999999999999999999999999977664 467765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 329 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~ 329 (1104)
+++++.|.+.+.+.|++||+. + ..+.|...+|...+++++.+|+++|++|.+..-|+||...
T Consensus 144 ----~ela~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~----------- 205 (557)
T PLN02946 144 ----ISLSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK----------- 205 (557)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc-----------
Confidence 478999999999999999988 3 4677888899999999999999999999999999999762
Q ss_pred cccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCcee
Q 001303 330 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 409 (1104)
Q Consensus 330 ~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ip 409 (1104)
+| .|..|.|..+..
T Consensus 206 ----------f~------------------------------------------------~YG~Ls~~~l~~-------- 219 (557)
T PLN02946 206 ----------FP------------------------------------------------EYGKLSGRKLED-------- 219 (557)
T ss_pred ----------ch------------------------------------------------hhhhcCCCChhH--------
Confidence 11 122222211100
Q ss_pred EEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 410 IICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 410 Ii~d~~~V~~~~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
+.-|.. |...+ -.+|.||.++|+.+ .
T Consensus 220 ---------l~~g~r-v~~~~~K~np~DFaLWK~~k----------------~--------------------------- 246 (557)
T PLN02946 220 ---------NRAGER-VAVDSRKKNPADFALWKAAK----------------E--------------------------- 246 (557)
T ss_pred ---------hhcCCC-CCcccccCCccccceeccCC----------------C---------------------------
Confidence 011111 11111 35677777765321 0
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCc
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 568 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG 568 (1104)
+++. | .--||
T Consensus 247 -----------------------------------------------ge~~-------------------W----~SPWG 256 (557)
T PLN02946 247 -----------------------------------------------GEPF-------------------W----DSPWG 256 (557)
T ss_pred -----------------------------------------------CCCC-------------------c----cCCCC
Confidence 1110 1 22588
Q ss_pred ccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhh
Q 001303 569 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 648 (1104)
Q Consensus 569 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~ 648 (1104)
.--|.||++ | +.+-...+|
T Consensus 257 ~GRPGWHIE-C---------------------------------------------------SaMs~~~lG--------- 275 (557)
T PLN02946 257 PGRPGWHIE-C---------------------------------------------------SAMSAAYLG--------- 275 (557)
T ss_pred CCCCcHHHH-H---------------------------------------------------HHHHHHHcC---------
Confidence 888999864 1 001111223
Q ss_pred hhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEE-ccceeCCCCccccccCCCccCccccccccCchhHHHHhh
Q 001303 649 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE 727 (1104)
Q Consensus 649 ~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~-Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~ 727 (1104)
.+.|+|.+|.|++|.+.-.-++.+.+..|. ||-+.++ ||||. .+|+|||||+||+|++.|+++
T Consensus 276 --~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~------------ 339 (557)
T PLN02946 276 --HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVID------------ 339 (557)
T ss_pred --CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHH------------
Confidence 245899999999999999999888887775 5554545 58887 999999999999999999998
Q ss_pred cCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC
Q 001303 728 EGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVP 807 (1104)
Q Consensus 728 ~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p 807 (1104)
+||+|++||||++ +...++++|+.+.+....+-+.++++++..+...+......
T Consensus 340 -------------------------~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~ 393 (557)
T PLN02946 340 -------------------------LYHPLALRLFLLG-THYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDST 393 (557)
T ss_pred -------------------------hcCccceeeeeec-cCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 8999999999998 56788999999999988888888888877654333211000
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhHhHHHHH
Q 001303 808 PLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 864 (1104)
Q Consensus 808 ~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~~~~~~n~Yie 864 (1104)
.. ... .+.-+...+..+...+.++|+ .++...|+..|++++ ...|.++.
T Consensus 394 ~~-----~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 394 FE-----KDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred cc-----ccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 00 000 011122345567788888885 599999999999996 45666664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=6.3e-31 Score=312.67 Aligned_cols=339 Identities=20% Similarity=0.293 Sum_probs=249.2
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
..|+|- |+|-+.+|||||++++..|++.||+|+.||+|.|+.|+|++|-+|...++ +.|+++
T Consensus 250 ~mYvCG--PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~-----e~G~sp----------- 311 (699)
T PRK14535 250 RMYVCG--MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAA-----ENGETI----------- 311 (699)
T ss_pred EEEecC--CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHH-----HcCCCH-----------
Confidence 445444 67778999999999999999999999999999999999999999877664 467775
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc-EeeeecCCCCcccccccccccc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
+++++.|...+.+.+++||++.| .++|...+|...++.++.+|.++|++|.+. .-|+||..+-
T Consensus 312 -~ela~~y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f------------ 375 (699)
T PRK14535 312 -GELTARFIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF------------ 375 (699)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc------------
Confidence 47889999999999999999988 357778899999999999999999999874 3688887621
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
| .|..|.|....
T Consensus 376 ---------~------------------------------------------------~YG~LS~~~~~----------- 387 (699)
T PRK14535 376 ---------A------------------------------------------------AYGQLSGKSLD----------- 387 (699)
T ss_pred ---------c------------------------------------------------ccccccCCChH-----------
Confidence 1 12222221100
Q ss_pred ecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 412 CDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
++.-|.. |-..+ -++|.||.++|+.. .|
T Consensus 388 ------~l~~g~r-ve~d~~Krnp~DFaLWK~sk----------------~G---------------------------- 416 (699)
T PRK14535 388 ------DLRAGER-VEVDGFKRDPLDFVLWKAAK----------------AG---------------------------- 416 (699)
T ss_pred ------HhcCCCc-cccccccCCccccceeccCC----------------CC----------------------------
Confidence 0000111 00111 45777777775321 01
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCccc
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 570 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~p 570 (1104)
+.. | .--||--
T Consensus 417 ----------------------------------------------ep~-------------------W----~SPWG~G 427 (699)
T PRK14535 417 ----------------------------------------------EPA-------------------W----ESPWGNG 427 (699)
T ss_pred ----------------------------------------------CCC-------------------c----cCCCCCC
Confidence 000 1 2247887
Q ss_pred ceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhh
Q 001303 571 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAF 650 (1104)
Q Consensus 571 IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~ 650 (1104)
-|.||++ | +.+....+|
T Consensus 428 RPGWHIE-C---------------------------------------------------SAMs~~~LG----------- 444 (699)
T PRK14535 428 RPGWHIE-C---------------------------------------------------SAMSENLFG----------- 444 (699)
T ss_pred CCchHHH-H---------------------------------------------------HHHHHHHcC-----------
Confidence 8888864 1 001111223
Q ss_pred CCcCcccccccccccHHHHHHHHHHhhcCCC---------------CceEEEEc-cceeCCCCccccccCCCccCccccc
Q 001303 651 YPTSVLETGHDILFFWVARMVMLGIKLGGEV---------------PFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVI 714 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~---------------PFk~V~~H-g~v~D~~G~KMSKS~GNvIdP~dii 714 (1104)
-+.|+|.+|.|.+|.+.-.-++.+.+.+|+. ||-+.++| |||. .+|+|||||+||+|+|.+++
T Consensus 445 ~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlL 523 (699)
T PRK14535 445 DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVL 523 (699)
T ss_pred CcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHH
Confidence 1358999999999999999999988877762 58778777 6665 99999999999999999999
Q ss_pred cccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHH
Q 001303 715 NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAV 794 (1104)
Q Consensus 715 ~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~ 794 (1104)
+ +||+|++|||+++ +...++++|+.+.+.++++.++++++++
T Consensus 524 e-------------------------------------~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~~l~Rl~~~l 565 (699)
T PRK14535 524 K-------------------------------------QYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKGALTRLYTTL 565 (699)
T ss_pred H-------------------------------------hCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999998 6788899999999999999999999987
Q ss_pred HHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001303 795 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 854 (1104)
Q Consensus 795 rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~ 854 (1104)
+-+. . ..+ . ....+..+...+.++|+ .+++..|+..|++++
T Consensus 566 ~~~~----~-~~~----------~----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 566 KNTP----A-AEF----------M----LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred Hhhh----h-ccc----------h----hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 5321 0 000 0 11234456677888885 599999999999886
No 54
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=2.4e-30 Score=276.66 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=82.4
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCcc
Q 001303 163 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 242 (1104)
Q Consensus 163 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~ 242 (1104)
|++.. +++.+++++.|.|| |.+||||++++++.|+++||+||+|++|+++.|+|.||.|++..+++ .|+++
T Consensus 13 ~~p~~-~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-----~g~~p- 83 (213)
T cd00672 13 FVPLN-PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-----EGLSW- 83 (213)
T ss_pred eecCC-CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-----cCCCH-
Confidence 44433 45668999998888 78999999999999999999999999999999999999999888864 46664
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c
Q 001303 243 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASL-D 276 (1104)
Q Consensus 243 ~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~-D 276 (1104)
++|++.+.+.++++|++||++. |
T Consensus 84 -----------~e~~~~~~~~f~~~~~~l~i~~~d 107 (213)
T cd00672 84 -----------KEVADYYTKEFFEDMKALNVLPPD 107 (213)
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5899999999999999999887 5
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=296.57 Aligned_cols=121 Identities=23% Similarity=0.245 Sum_probs=104.1
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
.+++++|..+.|||||.|||||+++.++.|+++|+.|+.||+|.++.|+|++|.++...++... +
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~-~-------------- 173 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE-L-------------- 173 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH-H--------------
Confidence 4468999999999999999999999999999999999999999999999999999877665421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEE-Ecc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIY-RDL 309 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIy-r~~ 309 (1104)
....+++.+.+.++++|++||+++| ....+.+..+...+.+++.+|.++|++| +..
T Consensus 174 --~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~ 230 (507)
T PRK01611 174 --LWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESD 230 (507)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeC
Confidence 2347789999999999999999998 3344666667788999999999999999 443
No 56
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=6e-29 Score=291.21 Aligned_cols=351 Identities=16% Similarity=0.171 Sum_probs=245.8
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeE---------eccC-CCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW---------VPGM-DHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~---------~~G~-D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
=|+|-..+||||+++++..|++.||+|++||+|.| ++|+ |+||-+|...++ ++|+++.
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~-----~~g~~~~------- 95 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAAR-----ERGLTVY------- 95 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHH-----HcCCCHH-------
Confidence 36778999999999999999999999999999999 7898 777777766553 4677753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 329 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~ 329 (1104)
++++.|...+.+.+++||++.| ..+.| .++|...++.++.+|.++|++|.....|+||+.+-
T Consensus 96 -----e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~---------- 157 (481)
T PRK14534 96 -----EISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF---------- 157 (481)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc----------
Confidence 7889999999999999999988 44444 57999999999999999999999999999998741
Q ss_pred cccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCcee
Q 001303 330 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 409 (1104)
Q Consensus 330 ~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ip 409 (1104)
| .|..|.|...
T Consensus 158 -----------~------------------------------------------------~YG~ls~~~l---------- 168 (481)
T PRK14534 158 -----------K------------------------------------------------SYGQMAGINL---------- 168 (481)
T ss_pred -----------c------------------------------------------------chhhhcCCCH----------
Confidence 1 1222222110
Q ss_pred EEecCccccCC--CCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCC
Q 001303 410 IICDAILVDPK--FGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGL 486 (1104)
Q Consensus 410 Ii~d~~~V~~~--~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~ 486 (1104)
-++. .|++ |...+ -++|.||.+++..
T Consensus 169 -------~~l~~~~~~~-v~~~~~K~np~DFaLWK~~------------------------------------------- 197 (481)
T PRK14534 169 -------NDFKDMSVSR-VEIDKSKRNKSDFVLWFTN------------------------------------------- 197 (481)
T ss_pred -------HHHhhhccCc-CCcccCCCCcccchhcCcC-------------------------------------------
Confidence 0000 0111 00001 2344444433210
Q ss_pred eeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCC
Q 001303 487 YRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLW 566 (1104)
Q Consensus 487 l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~ 566 (1104)
+.+++.++++...
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~w~sp 210 (481)
T PRK14534 198 -------------------------------------------------------------------SKFKDQEMKWDSP 210 (481)
T ss_pred -------------------------------------------------------------------CcCCCCCCeecCC
Confidence 0133445666778
Q ss_pred CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChh
Q 001303 567 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 646 (1104)
Q Consensus 567 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d 646 (1104)
||.--|.|+++ |. | +-...+|
T Consensus 211 WG~GrPgWHiE-Cs---------------------a------------------------------m~~~~lg------- 231 (481)
T PRK14534 211 WGFGYPSWHLE-CA---------------------A------------------------------MNLEYFK------- 231 (481)
T ss_pred CCCcCCcHHHH-HH---------------------H------------------------------HHHHHcC-------
Confidence 99999999864 10 0 0001111
Q ss_pred hhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHh
Q 001303 647 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 726 (1104)
Q Consensus 647 ~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l 726 (1104)
-..|+|..|.|++|++.-..++++.+.+|. ||-+.++|+-.+..+|+|||||+||+|++.|+++.
T Consensus 232 ----~~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~---------- 296 (481)
T PRK14534 232 ----STLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQ---------- 296 (481)
T ss_pred ----CcceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhc----------
Confidence 134899999999999999999998888876 66777777644458999999999999999999971
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 001303 727 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFV 806 (1104)
Q Consensus 727 ~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~ 806 (1104)
.|+++++||++++ +....+++|+++.+...++-++++++.++.+...+.. ..
T Consensus 297 --------------------------~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~-~~ 348 (481)
T PRK14534 297 --------------------------GFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQ-FD 348 (481)
T ss_pred --------------------------CCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-cc
Confidence 3889999999887 6777899999999999999999999988754333311 00
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001303 807 PPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 854 (1104)
Q Consensus 807 p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~ 854 (1104)
. ........+ .....+..+...+.++| +.++.+.|+..|++++
T Consensus 349 ~-~~~~~~~~~----~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 349 L-NLLNKDLEN----IEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred c-ccccccccc----chhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 0 000000000 00011234456777888 4599999999999886
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.94 E-value=1.4e-26 Score=263.26 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=99.8
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc--------CChHHHHHHHHHHHHcCCCcc
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRH 242 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~--------Glp~q~~vek~l~~~~g~~~~ 242 (1104)
+++|+|++|++ |||.+||||++.++..|+++||+||+|++|.+++|+|.| |+|.+ +++. .|++..
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~----~G~pi~ 90 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQY----IGMPLS 90 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHh----cCccch
Confidence 45799999985 999999999999999999999999999999999999999 46643 4443 466554
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHhcCcEEE
Q 001303 243 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 243 ~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
.+.... ..|..|++.+...+++.|++||+++|+ +.|++ ...-...+.++..|.+.+.|..
T Consensus 91 ~ip~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~---~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 91 SVPDPF--GCCESYAEHFERPFEESLEKLGIEVEF---ISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hchhhc--CCCHHHHHHHHHHHHHHHHHcCCeeee---eecCCchhhchHHHHHHHHHHHCChHHH
Confidence 443322 235589999999999999999999993 33444 4444788899999999988853
No 58
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94 E-value=3.8e-26 Score=240.18 Aligned_cols=179 Identities=30% Similarity=0.463 Sum_probs=148.5
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHHhh--hhCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 001303 775 LDIQRVVGYRQ-WCNKLWNAVRFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV 850 (1104)
Q Consensus 775 f~~~~i~~~r~-f~nKl~N~~rf~l~--~~~~~~~p~~~-~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i 850 (1104)
|+.+.+.++++ |||||||++||+++ +.. ++.|... .....++..|+||++++++++..++++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~-~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLD-GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 57788999888 99999999999986 433 2444311 1123467899999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCccccc
Q 001303 851 YSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCE 930 (1104)
Q Consensus 851 ~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~ 930 (1104)
|.|++ .++++|++.+|+.+++++.. ..+..++.+|..+++.++++|||||||+|||||+.++...+ .+.+||+.++
T Consensus 80 ~~f~~-~~~~~Y~e~~K~~~~~~~~~--~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~-~~~~si~~~~ 155 (183)
T cd07961 80 LEFID-ELTNWYIRRNRKRFWGEEGD--DDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLD 155 (183)
T ss_pred HHHHH-HhhhhHhhhchHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC-CCCCceeeec
Confidence 99996 56699999999988765311 14566888999999999999999999999999999975211 1236899999
Q ss_pred CCCCCCCCCcHHhHHHhHHHHHHHHHHH
Q 001303 931 YPSAVEGWTDERAEFEMDLVESTVRCIR 958 (1104)
Q Consensus 931 wP~~~e~~~d~~~e~~~e~i~~ii~~iR 958 (1104)
||.+++.+.|+.++..++.++++++++|
T Consensus 156 wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 156 WPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 9999888889999999999999999987
No 59
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.92 E-value=2.6e-24 Score=225.61 Aligned_cols=176 Identities=26% Similarity=0.443 Sum_probs=147.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 853 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~-~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f 853 (1104)
++.+.+.+++++++|+||++||+++.+.+ +.|.... .....+..|+||+++++.++.++.++|++|+|+.|++.+++|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567889999999999999999887654 5443211 123567899999999999999999999999999999999999
Q ss_pred HHhhHhHHHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccC
Q 001303 854 WQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEY 931 (1104)
Q Consensus 854 ~~~~~~n~Yie~~K~~l~~~--~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~w 931 (1104)
+++++||+|++.+|||++++ +.. .+..+..+|+.+++.+++||||||||+||+||+.|+.. .+.+||+.++|
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~---~~~~~v~~~~w 153 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKDSL---ERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE---KKEESVFLEDW 153 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCCCH---HHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc---CCCCCeeccCC
Confidence 98899999999999998753 222 34567889999999999999999999999999999752 11368999999
Q ss_pred CCCCCCCCcHHhHHHhHHHHHHHHHH
Q 001303 932 PSAVEGWTDERAEFEMDLVESTVRCI 957 (1104)
Q Consensus 932 P~~~e~~~d~~~e~~~e~i~~ii~~i 957 (1104)
|++++.+.|++++..|+.+++|-..|
T Consensus 154 P~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 154 PELPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHhh
Confidence 99998888999999998888875544
No 60
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-24 Score=247.73 Aligned_cols=342 Identities=22% Similarity=0.338 Sum_probs=242.8
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
-+-|+|- |+|....|||||++++.-|++.||.+..||.|.|+..+-.- .-++-++. ++.|.+
T Consensus 23 V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----DDKIi~rA-~~~g~~----------- 84 (464)
T COG0215 23 VKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----DDKIINRA-REEGLS----------- 84 (464)
T ss_pred EEEEecC--CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----cHHHHHHH-HHhCCC-----------
Confidence 3455554 78889999999999999999999999999999998876442 22222221 245554
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHhcCcEEEc-cEeeeecCCCCcccccccccc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEVDY 329 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s-~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~-~~~v~wcp~~~TaLsd~EVe~ 329 (1104)
++++++.|+..+.+++..||+. .|- .+..| +|...+.++..+|.++|+.|.. .--|+++...
T Consensus 85 -~~ev~~~~i~~f~~D~~aL~v~~p~~-~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~----------- 148 (464)
T COG0215 85 -IREVAERYIAAFFEDMDALNVLPPDI-EPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK----------- 148 (464)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCcc-cCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc-----------
Confidence 4589999999999999999994 452 23344 7888889999999999999998 4577777641
Q ss_pred cccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcE-eecCCCCCce
Q 001303 330 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKF-AIHPFNGRKI 408 (1104)
Q Consensus 330 ~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~-~~~P~~~~~i 408 (1104)
+| .|..|.|.. ...-..|..+
T Consensus 149 ----------f~------------------------------------------------~YG~LS~~~~le~l~~gar~ 170 (464)
T COG0215 149 ----------FK------------------------------------------------DYGKLSGRDSLEELQAGARV 170 (464)
T ss_pred ----------ch------------------------------------------------hhHhhcCCCChhHHhhcccc
Confidence 11 122222210 0000000000
Q ss_pred eEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 409 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 409 pIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
. ++.+ -.+|.||.+++.. ..
T Consensus 171 ~-------~~~~----------Krnp~DFvLWK~s----------------k~--------------------------- 190 (464)
T COG0215 171 E-------VDEE----------KRNPLDFVLWKAA----------------KP--------------------------- 190 (464)
T ss_pred c-------cccc----------cCCchhheeeccC----------------CC---------------------------
Confidence 0 1111 3466777666421 00
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCc
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 568 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG 568 (1104)
++.. | .--||
T Consensus 191 -----------------------------------------------gEp~-------------------W----~SPWG 200 (464)
T COG0215 191 -----------------------------------------------GEPS-------------------W----DSPWG 200 (464)
T ss_pred -----------------------------------------------CCCC-------------------C----CCCCC
Confidence 1111 1 23688
Q ss_pred ccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhh
Q 001303 569 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 648 (1104)
Q Consensus 569 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~ 648 (1104)
.-=|.||++ | +.+-...+|-
T Consensus 201 ~GRPGWHIE-C---------------------------------------------------SaM~~~~LG~-------- 220 (464)
T COG0215 201 KGRPGWHIE-C---------------------------------------------------SAMSTKYLGE-------- 220 (464)
T ss_pred CCCCchhHH-H---------------------------------------------------HHHHHHHhCC--------
Confidence 888999874 2 1111223331
Q ss_pred hhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhc
Q 001303 649 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 728 (1104)
Q Consensus 649 ~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~ 728 (1104)
..|+|.+|.|++|.+.-.-++.+.+.+|..||-+.++|.-.+.-+|+|||||+||+|+..|+++
T Consensus 221 ---~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~------------- 284 (464)
T COG0215 221 ---TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK------------- 284 (464)
T ss_pred ---CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-------------
Confidence 2389999999999999999999999999899999999955555999999999999999999998
Q ss_pred CCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q 001303 729 GNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP 808 (1104)
Q Consensus 729 ~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~ 808 (1104)
+|++.+|||+|++ +....+++|+.+.+..+++.+.+|+|+++.+.....+ ..
T Consensus 285 ------------------------~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~-~~-- 336 (464)
T COG0215 285 ------------------------KYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD-AE-- 336 (464)
T ss_pred ------------------------hcCHHHHHHHHHH-HHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc-cc--
Confidence 8999999999998 6677899999999999999999999999876532221 00
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001303 809 LKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 854 (1104)
Q Consensus 809 ~~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~ 854 (1104)
.. .+......+.++| +.|++..|++.|++++
T Consensus 337 -------~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 337 -------LA--------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred -------cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 00 3445566677778 5599999999999986
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=9.3e-23 Score=244.43 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=92.6
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC--------ChHHHHHHHHHHHHcCCCcc
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRH 242 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G--------lp~q~~vek~l~~~~g~~~~ 242 (1104)
++.++|.+|+ +|||.+||||++.++..|+++|+.|++|++|.+++|+|.|| +|.+..+++. .|++..
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~----~G~pl~ 96 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY----LGKPLT 96 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHh----cCcccc
Confidence 4458888887 59999999999999999999999999999999999999998 6764344444 355533
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhH-HHHHHHHHHHHhcCcEE
Q 001303 243 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRS-KAVTEAFVRLYKEGLIY 306 (1104)
Q Consensus 243 ~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~-~~v~~~F~~L~~~GlIy 306 (1104)
.+... |= .+..|++.+...+.+.|+++|+++| .+.|++-..+ .+...++.-|.+.+.|.
T Consensus 97 ~~p~p-~G-~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~ 156 (510)
T PRK00750 97 EIPDP-FG-CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIM 156 (510)
T ss_pred cCCCC-CC-CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHH
Confidence 22211 11 1568999999999999999999998 3334332222 44555556666666654
No 62
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.89 E-value=1e-23 Score=231.58 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=89.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
+.|+|- |+|...+|||||++++..|++.||.+..||+|.++.+.-...=.| -++. ++.|++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKi----i~~A-~~~g~~~----------- 71 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKI----IKRA-REEGVSP----------- 71 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHH----HHHH-HHTTS-H-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHH----HHHH-HhccCCH-----------
Confidence 556555 677899999999999999999999999999999999865543222 2222 3466654
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc-EeeeecCC
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCV 317 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~-~~v~wcp~ 317 (1104)
++.+..|.+.+.++|++||+.-...- +--.++...+.+...+|.++|+.|... .-|+++..
T Consensus 72 -~ela~~y~~~f~~dm~~Lnv~~p~~~---prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 72 -QELARRYEEEFFEDMKALNVLPPDHY---PRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp -HHHHHHHHHHHHHHHHHTT----SEE---EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCccc---cchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 47788999999999999999876333 334488899999999999999999998 88888764
No 63
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.88 E-value=3.8e-22 Score=203.19 Aligned_cols=150 Identities=33% Similarity=0.566 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001303 820 CKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 899 (1104)
Q Consensus 820 D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL 899 (1104)
|+||+++++.+++.++++|++|+|+.|++.+++|+++++||+|++.+||++++++... .++ ++.+|+.+++.+++||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~--~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDE--SRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCH--HHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchh--HHH-HHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999889999999999999988764331 345 8899999999999999
Q ss_pred hchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHh-HHHhHHHHHHHHHHHHHHHHhhccCCCCcccEEE
Q 001303 900 HPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERA-EFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIA 977 (1104)
Q Consensus 900 ~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~-e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~~~I 977 (1104)
||||||+||+||++|+... ....+||+.+.||. .....+... +..++.+.++++.+|++|+.. +++.+.++.|
T Consensus 78 ~P~~P~~aEeiw~~l~~~~-~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~---~i~~~~~~~v 151 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRLKSEK-LGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEK---NIKPKEPLKV 151 (153)
T ss_dssp TTTSHHHHHHHHHHCTTHH-TTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCC---EESTTCGEEE
T ss_pred CCCCcHHHHHHHHHhhhcc-CCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCc
Confidence 9999999999998884211 13357999999998 544446556 789999999999999999998 7765555544
No 64
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.87 E-value=1.5e-22 Score=210.13 Aligned_cols=127 Identities=39% Similarity=0.626 Sum_probs=98.3
Q ss_pred eeEeeecCCCcceEEEeeccccccccCceEEecCCcccc---------------------------------ccccCcEe
Q 001303 353 TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARY---------------------------------SHLHGKFA 399 (1104)
Q Consensus 353 ~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry---------------------------------~~l~G~~~ 399 (1104)
..+.|++.+++..|.|+||||+||+|.++||++|+++.- .-+.|.++
T Consensus 10 ~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~a 89 (185)
T PF13603_consen 10 AEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLYA 89 (185)
T ss_dssp EEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCEE
Confidence 467888888888999999999999999999999998721 02468999
Q ss_pred ecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC----------------CCccccCCCC
Q 001303 400 IHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------------DGKINSNGGL 463 (1104)
Q Consensus 400 ~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~----------------~G~~~~~~g~ 463 (1104)
.||++++++||+..+| |.+++||||||.|||||.+||++|++||||+..||.. +|.+. |+|
T Consensus 90 ihP~t~~~iPI~va~y-Vl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~- 166 (185)
T PF13603_consen 90 IHPLTGKKIPIYVANY-VLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG- 166 (185)
T ss_dssp E-TTTS-EEEEEEETT-S-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG-
T ss_pred ECCCCCCCccEEEECc-eeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC-
Confidence 9999999999999996 9999999999999999999999999999999888753 36676 778
Q ss_pred CCCCCchhhHHHHHHHHHH
Q 001303 464 EFEGMPRFKAREAVNEALK 482 (1104)
Q Consensus 464 ~~~Gl~~~~ar~~vi~~L~ 482 (1104)
+|.||+..+|+++|++.|+
T Consensus 167 ~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 167 EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999985
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.87 E-value=4.4e-20 Score=225.34 Aligned_cols=221 Identities=18% Similarity=0.110 Sum_probs=135.5
Q ss_pred cccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHH
Q 001303 659 GHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEV 738 (1104)
Q Consensus 659 G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~ 738 (1104)
|.|+ ..++.++......+ |..+.+++..|++.+ ..|.|||||+||+|+|.|+++... .-....+...+.+
T Consensus 335 g~~q-~~h~~~v~~~l~~l-G~~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~-~ra~~~i~~~~~~------ 404 (566)
T TIGR00456 335 GSDH-HLHIAQFFAILEKL-GFYKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEAS-KRAGNVITIKNDL------ 404 (566)
T ss_pred cCcH-HHHHHHHHHHHHHc-CCCCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHH-HHHHHHHHhcCCc------
Confidence 4443 34556665444443 422337888888876 567899999999999999987210 0000011111100
Q ss_pred HHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH-HHHHHHHHHHHHHhhhhCC---CCCCCCCCCCC
Q 001303 739 AKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR-QWCNKLWNAVRFSMSKLGE---GFVPPLKLHPH 814 (1104)
Q Consensus 739 a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r-~f~nKl~N~~rf~l~~~~~---~~~p~~~~~~~ 814 (1104)
+...-+..+|+||+||++++.. ...|++||++.+.... +..+-+-|+..++.+.+.. +..+.......
T Consensus 405 -------~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~ 476 (566)
T TIGR00456 405 -------EEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFS 476 (566)
T ss_pred -------cHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccC
Confidence 1112234899999999999977 5789999999764321 2333333443333222211 11111110111
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHH
Q 001303 815 NLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLET 894 (1104)
Q Consensus 815 ~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~ 894 (1104)
..++.++.++..+..+...+.+++++++++.++..+++++ ..+|.|++.+ +.+..+++.....|.........+|..
T Consensus 477 ~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~-~Vl~~~~~~~~~~RL~L~~a~~~vl~~ 553 (566)
T TIGR00456 477 LLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC-PVLDAENENLAAARLALLKATRQTLKN 553 (566)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC-ccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2355677889999999999999999999999999999985 7788888866 445433332222455555566667777
Q ss_pred HHHHHh
Q 001303 895 GLRLLH 900 (1104)
Q Consensus 895 ~l~LL~ 900 (1104)
+|.||.
T Consensus 554 gL~lLG 559 (566)
T TIGR00456 554 GLQLLG 559 (566)
T ss_pred HHHhcC
Confidence 787774
No 66
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.6e-19 Score=203.99 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=140.5
Q ss_pred cCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCC
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 732 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~ 732 (1104)
.|+|-+|.|+-|.+.-.-++.+.+.....++-+.++|.=-+..+|+|||||++|+|+..+++.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk----------------- 321 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK----------------- 321 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-----------------
Confidence 489999999999999999999999888888999999944445999999999999999999998
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCC
Q 001303 733 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH 812 (1104)
Q Consensus 733 ~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~ 812 (1104)
.|.+++||++++. .....+++|+.+.+..+.++...+-|++.-+.... +.-.|
T Consensus 322 --------------------~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~-~~~~~----- 374 (586)
T KOG2007|consen 322 --------------------KYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALL-RGAKP----- 374 (586)
T ss_pred --------------------hcCHHHHHHHHHH-HHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hccch-----
Confidence 8999999999887 56677999999999888888877777664332222 11111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhHhHHHHHhhc
Q 001303 813 PHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEAIK 867 (1104)
Q Consensus 813 ~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yie~~K 867 (1104)
.+.+++.+.-++..+..+...+..++ ++++-..++..+.+.+ ..+|.||....
T Consensus 375 ~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007|consen 375 FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHH--hhhhHHHHHhc
Confidence 23567788889999999999999888 8899999999999985 78999998765
No 67
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=8.4e-16 Score=185.12 Aligned_cols=216 Identities=21% Similarity=0.246 Sum_probs=130.7
Q ss_pred cccccccccHHHHHHHHHHhhcCCCCceEEEEc---cceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCCh
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 733 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~H---g~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~ 733 (1104)
+.|.|+. .++.++.+.. .+.|..|-+.+++| |++++.+|.||||..||+|...|+++-.. ...+
T Consensus 340 V~gadq~-~~~~ql~~~l-~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~-----------era~ 406 (577)
T COG0018 340 VLGADQH-GHFKQLKAVL-ELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAG-----------ERAP 406 (577)
T ss_pred EeCCcch-hHHHHHHHHH-HHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHH-----------HHhh
Confidence 3355543 4455554432 22333343445555 78889999999999999999999987211 1111
Q ss_pred HHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH------------HHHHHHHHHHHHHHHhhhh
Q 001303 734 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKL 801 (1104)
Q Consensus 734 ~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~------------~r~f~nKl~N~~rf~l~~~ 801 (1104)
.+++.. .+.. -+..+..|.||+||++++.++ ..++.||++.+.. +.+.|.-+.++
T Consensus 407 ~~~~~~---~~~~-~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka-------- 473 (577)
T COG0018 407 EEMEEK---EEKN-EEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA-------- 473 (577)
T ss_pred hHhhhh---hhhh-HHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhc--------
Confidence 111111 0000 122336899999999999665 4599999998754 12222222221
Q ss_pred CCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHH
Q 001303 802 GEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 880 (1104)
Q Consensus 802 ~~~~~p~~-~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~ 880 (1104)
+....+.. .....-..+.++-++.+|..+...+.++.+.++.|..+..++++. ..|+++|=.+ |.+..++......
T Consensus 474 ~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~~--~Vl~~~~~~~~~a 550 (577)
T COG0018 474 GEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNAC--PVLGAENEELRAA 550 (577)
T ss_pred cccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhhC--CcCCCCcHHHHHH
Confidence 11000100 000011223357789999999999999999999999999999997 8999999442 3344333322234
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 001303 881 RSAAQHVLWVCLETGLRLLHP 901 (1104)
Q Consensus 881 r~~a~~~L~~~l~~~l~LL~P 901 (1104)
|.........+|..+|.||--
T Consensus 551 RL~L~~a~~~vL~ngL~LLGI 571 (577)
T COG0018 551 RLALVKATRQVLKNGLDLLGI 571 (577)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 555555666678888887753
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.75 E-value=2.9e-17 Score=195.83 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=75.6
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc--------CChHHHHHHHHHHHHcCCCccc
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRHD 243 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~--------Glp~q~~vek~l~~~~g~~~~~ 243 (1104)
.+++|.+|.+ |||.+||||++..+..|+++|+.|++|++|.+++|+|++ ++| + ..++.+ |.....
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~-~~~~yl----G~Pl~~ 90 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E-ELETYL----GMPLTR 90 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H-HHHHhC----CCccee
Confidence 4699999999 999999999999999999999999999999999999999 455 1 133332 433222
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001303 244 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 277 (1104)
Q Consensus 244 ~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW 277 (1104)
+.. .| ..+..|++.+...+.+.|..||+.+++
T Consensus 91 vpd-p~-g~~~s~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 91 IPD-PE-GCKTSYAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred cCC-CC-CCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 111 01 013589999999999999999998874
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=1.3e-14 Score=177.03 Aligned_cols=210 Identities=22% Similarity=0.187 Sum_probs=126.5
Q ss_pred cccccccccHHHHHHHHHHhhcCCCC--ceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCC--CC
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVP--FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN--LD 732 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~P--Fk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~--l~ 732 (1104)
+.|.|+ ..++.++..+.-. .|..+ --.++..|+|. .+|+||||.+||+|...|+++.. .+.....+.+.+ ++
T Consensus 330 V~g~dq-~~h~~~l~~~~~~-lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea-~~~a~~~~~~~~~~l~ 405 (562)
T PRK12451 330 VVGPEQ-SLHFNQFFTVLKK-LGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEA-IELAKQNIEEKNPNLK 405 (562)
T ss_pred EeCCcH-HHHHHHHHHHHHH-cCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHH-HHHHHHHHHhhccccc
Confidence 335553 2445555443333 34222 13467889997 68889999999999999999731 111111122111 22
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH------------HHHHHHHHHHHHHHHhhh
Q 001303 733 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSK 800 (1104)
Q Consensus 733 ~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~------------~r~f~nKl~N~~rf~l~~ 800 (1104)
+.|. .| ...|.||+||++++... ..++.||++.+.. +.+.|.-+..+
T Consensus 406 ~~~~-~a------------~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka------- 464 (562)
T PRK12451 406 QKEE-VA------------KQVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGPYVQYTHARACSILRKE------- 464 (562)
T ss_pred cHHH-HH------------HHhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhc-------
Confidence 1111 11 16889999999999655 5699999998532 22333322221
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHH
Q 001303 801 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 880 (1104)
Q Consensus 801 ~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~ 880 (1104)
+..+.. ....-..+.++-++..+..+...+..++++++++.++..+++++ ...|.|++.++ .+. + ++....
T Consensus 465 -~~~~~~---~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~~-Vl~-~-~~~~~~ 535 (562)
T PRK12451 465 -SVEFET---CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNVR-ILE-E-SAEKDS 535 (562)
T ss_pred -CCCccc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhCC-CCC-C-HHHHHH
Confidence 111110 11111245567788999999999999999999999999999985 66677776543 342 2 221224
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001303 881 RSAAQHVLWVCLETGLRLLH 900 (1104)
Q Consensus 881 r~~a~~~L~~~l~~~l~LL~ 900 (1104)
|.........+|..+|.||.
T Consensus 536 RL~L~~a~~~vL~~gL~LLG 555 (562)
T PRK12451 536 RLALVYAVTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44455555666777777774
No 70
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.66 E-value=1.4e-15 Score=152.09 Aligned_cols=135 Identities=47% Similarity=0.895 Sum_probs=108.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 854 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~ 854 (1104)
||.+.+.+.++|++|+||+++|+...... +.+... +.......|+|+++.++.++..+..+|++|+|+.|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLED-DDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccc-cCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67888999999999999999998553221 112110 1123457789999999999999999999999999999999998
Q ss_pred HhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHC
Q 001303 855 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 914 (1104)
Q Consensus 855 ~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L 914 (1104)
..+.+|+|++..+||....+.. .......++..++..+++||+|||||+||+||+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEE---EKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChH---HHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 5569999999999995443322 34456778888999999999999999999999875
No 71
>PLN02286 arginine-tRNA ligase
Probab=99.65 E-value=2.1e-13 Score=166.60 Aligned_cols=190 Identities=11% Similarity=0.118 Sum_probs=122.9
Q ss_pred eEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhc----CCCChHHHHHHHhccCCCCCCCCCCCCchHH
Q 001303 684 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE----GNLDPKELEVAKKGQKADFPNGIPECGTDAL 759 (1104)
Q Consensus 684 k~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~----~~l~~~e~~~a~~~~~~~fp~~i~~yGaDal 759 (1104)
-.++..|||+..+|+||||..||+|...|+++.. .+.....+.+ ..+++.+.+... ...|.||+
T Consensus 363 l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea-~~~a~~~~~~~~~~~~~~~~~~~~~a-----------~~vg~~Ai 430 (576)
T PLN02286 363 LEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEA-KSRSKAALIERGKDSEWTPEELEQAA-----------EAVGYGAV 430 (576)
T ss_pred eEEEeeccEECCCCCcccCCCCCeeEHHHHHHHH-HHHHHHHHHhccCccccchhhHHHHH-----------HHhhhhhh
Confidence 3578899998788999999999999999999831 1111111211 123333322111 16899999
Q ss_pred HHHHHhccCcccccccchHHHHH------------HHHHHHHHHHHHHHHhhhhCCCC-CCCCCCCCCCCChhhHHHHHH
Q 001303 760 RFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLGEGF-VPPLKLHPHNLPFSCKWILSV 826 (1104)
Q Consensus 760 R~~L~~~~~~~~di~f~~~~i~~------------~r~f~nKl~N~~rf~l~~~~~~~-~p~~~~~~~~~~~~D~wils~ 826 (1104)
||++++... ..+++||++.+.. +.+.|.-+.++ +... .........-..+.++-++..
T Consensus 431 ry~~L~~~~-~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa--------~~~~~~~~~~~~~~l~~~~E~~L~~~ 501 (576)
T PLN02286 431 KYADLKNNR-LTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKS--------GKDIDELKKTGKIVLDHPDERALGLH 501 (576)
T ss_pred hhhhhhcCC-CCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhc--------cCccccccccccccCCCHHHHHHHHH
Confidence 999998655 5699999998542 22233322221 1100 000000011224567778999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 827 LNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 900 (1104)
Q Consensus 827 L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~ 900 (1104)
|..+...+..+.+.++.+..++.++++. ..|..+|=+. +.+..++.. .|.........+|..+|.||-
T Consensus 502 l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~~--~Vl~~~~~~---aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 502 LLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSNC--KVNGSEEET---SRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhcC--ccCCCCchh---HHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999987 7888888533 444322222 566666666777888888874
No 72
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.63 E-value=1.8e-15 Score=162.83 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=105.9
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 253 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~ 253 (1104)
.+|=-.+|||||.|||||+++.++.|+++||.|+.|++|.+..|+|++|.+++..++... .+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------~~ 63 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------KW 63 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH------------------HH
Confidence 456678999999999999999999999999999999999999999999999988775431 16
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-cCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCC
Q 001303 254 WKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 318 (1104)
Q Consensus 254 ~~~~~~~~~~i~~ql~~lG~s~D-W~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~ 318 (1104)
+++++.+.+.+.+.+++||+++| |.+ |.+. ...+..++..|.++|++|...-.+.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d~~~~---es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFDVWFG---ESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCceecc---hhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 78999999999999999999998 543 5543 788999999999999999988777777643
No 73
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.1e-14 Score=141.37 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV-YSW 853 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i-~~f 853 (1104)
|+.+.+.++.+|++++|+.+....+ . ..|. ...+..|+|++++++++++++.++|++|+|+.|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~-~~~~-----~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---T-EGEL-----EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---c-cCCc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677889999999999999865221 1 1121 2346789999999999999999999999999999997 777
Q ss_pred HHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHC
Q 001303 854 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 914 (1104)
Q Consensus 854 ~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L 914 (1104)
+ +.||+|++.++|+ . ...+++.+++.++++|+|||||+|||||+.|
T Consensus 72 ~--~~~~~Y~~~~~~~-----~--------~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG-----M--------NKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc-----c--------hHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 4 5899999998886 1 2358899999999999999999999999875
No 74
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.55 E-value=4.4e-14 Score=136.83 Aligned_cols=117 Identities=25% Similarity=0.345 Sum_probs=95.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001303 775 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 854 (1104)
Q Consensus 775 f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~ 854 (1104)
||.+.+.++++|+|++||++.+..+.. .|.. ........|+|++++++++++++.++|++|+|+.|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~----~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL----AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc----cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 678889999999999999987643221 1211 0123456799999999999999999999999999999999997
Q ss_pred HhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHC
Q 001303 855 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 914 (1104)
Q Consensus 855 ~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L 914 (1104)
..+|.|++...| ...++..+++.+++||+|||||+||+||+.|
T Consensus 75 --~~~n~~~~~~~p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 --NALYKYKKKDAQ---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHHhhccccc---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 468888764433 3568889999999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.51 E-value=1.6e-13 Score=135.35 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHh
Q 001303 780 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 859 (1104)
Q Consensus 780 i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~ 859 (1104)
+..+.++++++++.+. ...+. ..|.. ......|+|++++++++++++.++|++|+|+.|++.+++|+ ++|
T Consensus 6 ~~~~gnll~r~~~~~~---~~~~~-~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~ 75 (129)
T cd07957 6 ANNLGNLVNRTLNMAS---KYFGG-VVPEF----GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAA 75 (129)
T ss_pred HhhHhhHHHHHHHHHH---HHcCC-cCCCC----CCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHH
Confidence 4455667777766553 22221 22211 12457799999999999999999999999999999999996 799
Q ss_pred HHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHC
Q 001303 860 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 914 (1104)
Q Consensus 860 n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L 914 (1104)
|+|++..|||...+++. ....+.+..++..++..++++|+|||||+||+||+.|
T Consensus 76 n~y~~~~kpw~~~~~~~-~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 76 NKYIDETAPWKLAKEED-PERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HhhhccCCCHHHHccCC-HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999999996543211 0133445567777889999999999999999999875
No 76
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=99.32 E-value=3.8e-12 Score=111.03 Aligned_cols=66 Identities=32% Similarity=0.524 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
|+++|++||+|+++++++++++++++|+|++|++|||++||+.+++|+++++.+++.+++.|+.|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999874
No 77
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.32 E-value=2.2e-11 Score=141.04 Aligned_cols=138 Identities=23% Similarity=0.300 Sum_probs=89.7
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHH---HHHHH---------
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEK---KLMRE--------- 236 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek---~l~~~--------- 236 (1104)
...++.+|=-.=|||||+|||||+++.+|.|+++|-.+..||+|.-..-....|..+-..+.. ....+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 455688888999999999999999999999999999999999999999999999765432211 10000
Q ss_pred --------------cCC---Ccccc---CHHHHHH-------HHHHHHHHHHHHHHHHHHHhccccc-cCCccccCChhh
Q 001303 237 --------------RKL---TRHDI---GREQFVS-------EVWKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKR 288 (1104)
Q Consensus 237 --------------~g~---~~~~~---~re~f~~-------~~~~~~~~~~~~i~~ql~~lG~s~D-W~r~~~T~d~~~ 288 (1104)
... ...++ .++.|.. -...|.....+.++++|.+||+.+| |..+ .+-.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~ 173 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFY 173 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhh
Confidence 000 00000 0111111 0123445577788999999999999 4433 34456
Q ss_pred HHHHHHHHHHHHhcCcEEEcc
Q 001303 289 SKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 289 ~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
...+..++.+|.++|++|+..
T Consensus 174 ~~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 174 SGKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp TTHHHHHHHHHHCTTTEEEET
T ss_pred hhHHHHHHHHHHhCCcEEecC
Confidence 677899999999999999754
No 78
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.23 E-value=1.1e-10 Score=112.39 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 001303 778 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 857 (1104)
Q Consensus 778 ~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~ 857 (1104)
+.+.++++|+|++||+++|+.....+ ..|.. ........|+|++++++.++..+.++|++|+|+.|++.+++|+ +.
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~-~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~-~~ 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGG-TQPKW--DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NE 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCc--ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh
Confidence 46788899999999999997654432 22211 0012356799999999999999999999999999999999997 33
Q ss_pred HhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchh
Q 001303 858 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFM 903 (1104)
Q Consensus 858 ~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~Pfm 903 (1104)
+ |+|++..|||...+. ....+..+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 999999999976542 334566789999999999999997
No 79
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.07 E-value=2.5e-10 Score=115.37 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=66.4
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 255 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~ 255 (1104)
|+.+.|||||.|||||++++++.|+++||+|++|++|.++.|+|.+|.++...+.+ .+.+ +++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-----~~~~------------~~~ 63 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-----KGEN------------AKA 63 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-----cCCC------------HHH
Confidence 35688999999999999999999999999999999999999999999998766543 2433 347
Q ss_pred HHHHHHHHHHHHHH
Q 001303 256 WKDEYGGTILRQQR 269 (1104)
Q Consensus 256 ~~~~~~~~i~~ql~ 269 (1104)
|++.+.+.++++++
T Consensus 64 ~~~~~~~~~~~~~~ 77 (143)
T cd00802 64 FVERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888888
No 80
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.70 E-value=1.2e-08 Score=116.06 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC--------ChHHHHHHHHHHHHcCCCc
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTR 241 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G--------lp~q~~vek~l~~~~g~~~ 241 (1104)
++..+++-++ =.|+|.+|||+++-.+..|+++|-.|.+|++|.+++.||..- +|-+ ..++.+ |+..
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~yl----g~Pl 94 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYL----GKPL 94 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCT----TSBT
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhc----CCcc
Confidence 3456777766 578999999999999999999999999999999999999863 3322 222221 3322
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 001303 242 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWS 278 (1104)
Q Consensus 242 ~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~ 278 (1104)
..++- -| ..+..|++.+...+.+.|..||+.+.+-
T Consensus 95 t~VPd-P~-G~~~SyaeH~~~~~~~~L~~~gie~e~~ 129 (360)
T PF01921_consen 95 TRVPD-PF-GCHESYAEHFNAPFEEFLDEFGIEYEFI 129 (360)
T ss_dssp TTSB--TT-SSSSCHHHHHHHHHHHHHHTTT---EEE
T ss_pred ccCCC-CC-CCCccHHHHHHHHHHHHHHHcCCceEEE
Confidence 22211 01 1145789999999999999999977643
No 81
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.66 E-value=2e-06 Score=103.89 Aligned_cols=98 Identities=27% Similarity=0.330 Sum_probs=68.9
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||+|||.||||||++.++.+.++| ...|.-++..=-+|. .+ .+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRidDTDp---k~--------------~R------------- 149 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDP---RT--------------KR------------- 149 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCC---Cc--------------cc-------------
Confidence 33445899999999999999999999999 334444444433332 00 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
...++.+.|.++|+.||+ +|+..++++ +|.....++..+|.++|++|...
T Consensus 150 -~~~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 199 (567)
T PRK04156 150 -PDPEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYVCT 199 (567)
T ss_pred -chHHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCccCC
Confidence 123345789999999997 676665554 45566778888999999998543
No 82
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.9e-07 Score=103.08 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=76.1
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC--------ChHHHHHHHHHHHHcCCCccc
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRHD 243 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G--------lp~q~~vek~l~~~~g~~~~~ 243 (1104)
..+++-+| =.|+|.+|||+++-.+..|++.|-.|-+|+.|.+++=||..- +|-+...++.+ |+....
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl----g~Plt~ 93 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL----GMPLTE 93 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc----CCcccc
Confidence 45666666 579999999999999999999999999999999999998864 35445556554 554433
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001303 244 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 277 (1104)
Q Consensus 244 ~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW 277 (1104)
++-. | -.|..|++.+...+.+-|..+|+-+.|
T Consensus 94 IPdP-~-G~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 94 IPDP-F-GCCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred CCCC-c-cccchHHHHHHHHHHHHHHhcCCceEE
Confidence 3211 0 135688999999999999999977764
No 83
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.25 E-value=1.7e-05 Score=95.30 Aligned_cols=95 Identities=28% Similarity=0.314 Sum_probs=68.4
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 255 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~ 255 (1104)
.+==+|.|||.||||||++.++.-.++|- ..|.-+|.+==+|.. |
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~~-------------------R-------------- 50 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTDQE-------------------R-------------- 50 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC-------------------C--------------
Confidence 34447999999999999999999999875 356666665555531 1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCc--------cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 256 WKDEYGGTILRQQRRLGASLDWSRE--------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 256 ~~~~~~~~i~~ql~~lG~s~DW~r~--------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-...+.+.|.++|+.||+ +|+.. |+.++ +...-.+...+|.++|++|+..
T Consensus 51 ~~~~~~~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C~ 108 (476)
T PRK01406 51 STEEAEEAILEGLKWLGL--DWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYCY 108 (476)
T ss_pred CChHHHHHHHHHHHHCCC--CCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeecC
Confidence 123466889999999995 55543 44433 3356677888999999999754
No 84
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.00 E-value=1.3e-05 Score=87.29 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=66.3
Q ss_pred CCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 001303 179 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 258 (1104)
Q Consensus 179 pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~ 258 (1104)
=+|.|||.||+|||++.++.++++| ++++.|+-=+|..--+.. ....
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~----------------------------~~~~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK----------------------------RPDP 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc----------------------------cchH
Confidence 3799999999999999999999999 456666655555321100 0123
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 259 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 259 ~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
.+.+.|.++|+.||+ +|+..++.+ ++.+..+++..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 344558999999998 777655443 455566677889999999997
No 85
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.57 E-value=0.00019 Score=80.10 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||||||++.++...++| +..|.-+|.+==+|..- -..+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~R---------------------------------~~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPPR---------------------------------EVPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCCC---------------------------------CChH
Confidence 799999999999999999999999 44677777765566410 1234
Q ss_pred HHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
+.+.|.++|+.||+ +|+.. ++.+ ++.+.-.++..+|.++|++|...
T Consensus 51 ~~~~I~~dL~wLGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C~ 97 (272)
T TIGR03838 51 AADDILRTLEAYGL--HWDGEVVYQS--QRHALYQAALDRLLAAGLAYPCQ 97 (272)
T ss_pred HHHHHHHHHHHcCC--CCCCCeeeee--CCHHHHHHHHHHHHHcCCEEecC
Confidence 56789999999996 55543 3433 44466778889999999999764
No 86
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.55 E-value=0.00022 Score=85.60 Aligned_cols=96 Identities=26% Similarity=0.348 Sum_probs=72.1
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|- ..|.-+|..==+|- .
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTDp-------------------~-------------- 56 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTNP-------------------S-------------- 56 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCC-------------------C--------------
Confidence 566668999999999999999999999974 35666655443432 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
.-..++.+.|.++|+-||+. |+..++++ +|-..-.++..+|.++|++|...
T Consensus 57 R~~~e~~~~I~~dL~WLGl~--wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 107 (523)
T PLN03233 57 KEKAEFEESIIEDLGKIEIK--PDSVSFTS--DYFEPIRCYAIILIEEGLAYMDD 107 (523)
T ss_pred ccchHHHHHHHHHHHHhCCC--CCCCcccc--ccHHHHHHHHHHHHHcCCeEecC
Confidence 11245678999999999965 65666554 45567788899999999999754
No 87
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.53 E-value=0.00026 Score=85.26 Aligned_cols=96 Identities=24% Similarity=0.246 Sum_probs=69.1
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|. ..|.-+|..==+|..
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRiEDTDp~--------------------------------- 96 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRYDDTNPE--------------------------------- 96 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCcc---------------------------------
Confidence 445558999999999999999999999985 356655554444421
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
.-..++.+.|.++|+.||+. |+..+++ ..|.....+...+|.++|++|...
T Consensus 97 r~~~e~~~~I~~dL~wLGi~--~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 97 TEEQVYIDAIMEMVKWMGWK--PDWVTFS--SDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred ccChHHHHHHHHHHHHcCCC--CCCCCcC--chhHHHHHHHHHHHHHcCCEEEcC
Confidence 01234678899999999965 5555443 345555567778999999999754
No 88
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.47 E-value=0.00042 Score=84.14 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=70.2
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++.+.++| ...|.-++..==+|. + +.
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp---~----------------R~------------ 140 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP---R----------------RV------------ 140 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc---c----------------cc------------
Confidence 66666899999999999999999999997 334544444333332 1 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
..++.+.|.++|+.||+. |+..+++ .+|.....++..+|.++|+.|...
T Consensus 141 --~~e~~~~I~edL~wLGi~--~d~~~~q--Sd~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVK--GDEVVYQ--SDRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred --cHHHHHHHHHHHHHcCCC--CCccccc--cccHHHHHHHHHHHHHcCCceeec
Confidence 134678899999999977 5565444 456677788889999999999754
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.42 E-value=0.00034 Score=80.07 Aligned_cols=92 Identities=30% Similarity=0.423 Sum_probs=62.7
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||||||++.++.-.++| +..|.-+|.+==+|.. |. ..+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~-------------------R~--------------~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE-------------------RC--------------RPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT-------------------TC--------------HHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc-------------------cc--------------hhh
Confidence 699999999999999999999998 5567666665555541 10 234
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
+.+.|.++|+.||+..| ..+|+. .++...-+.+..+|.++|++|...
T Consensus 52 ~~~~i~~~L~wlGl~~D-~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~C~ 98 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWD-YGPYYQ--SDRLEIYQEAAEKLIDKGKAYPCF 98 (314)
T ss_dssp HHHHHHHHHHHHT---S-TCEEEG--GGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhheeEEEEecC-CeEEeH--HHHHHHHHHHHHHHhhcCCCcccc
Confidence 56789999999996655 244443 345556777888999999999754
No 90
>PLN02907 glutamate-tRNA ligase
Probab=97.41 E-value=0.00049 Score=86.52 Aligned_cols=94 Identities=28% Similarity=0.396 Sum_probs=71.1
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++| +..|.-+|..==+|- .+
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp-------------------~r------------- 259 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP-------------------SK------------- 259 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC-------------------Cc-------------
Confidence 66777999999999999999999999998 446666655433432 01
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
-..++.+.|.++|+-||+ +|+..++++ +|-..-.+...+|.++|++|.
T Consensus 260 -~~~e~~~~I~~dl~wLG~--~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 -ESDEFVENILKDIETLGI--KYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred -CChHHHHHHHHHHHHcCC--CCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 123567899999999996 555766654 445667788899999999996
No 91
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00039 Score=84.47 Aligned_cols=93 Identities=26% Similarity=0.424 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|-. .|.-+|.+==+|- .+
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp-------------------~R------------- 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP-------------------SK------------- 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC-------------------cc-------------
Confidence 5666689999999999999999999999853 5655554433332 01
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHhcCcEE
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIY 306 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy 306 (1104)
-..++.+.|.++|+.||+ +|+. .++++ +|-..-.++..+|.++|+.|
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 124567899999999996 6665 45544 45677788889999999998
No 92
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.37 E-value=0.00045 Score=83.14 Aligned_cols=94 Identities=26% Similarity=0.343 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 001303 178 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 257 (1104)
Q Consensus 178 ~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~ 257 (1104)
==||.|||.||||||++.++...++|- ..|.-+|..==+|-. + -.
T Consensus 4 RFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~~-------------------r--------------~~ 48 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNPV-------------------K--------------ED 48 (522)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCcc-------------------c--------------CC
Confidence 348999999999999999999999984 456666555444430 0 12
Q ss_pred HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 258 DEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 258 ~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
.++.+.|.++|+-||+..| +..+++++ |-....+.-.+|.++|++|...
T Consensus 49 ~e~~~~I~~dL~wLG~~~d-~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 49 PEYVESIKRDVEWLGFKWE-GKIRYSSD--YFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred hHHHHHHHHHHHHcCCCCC-CCceEccc--cHHHHHHHHHHHHHcCCEEeec
Confidence 3567899999999996544 33455433 2333445558999999999764
No 93
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.37 E-value=0.00057 Score=74.47 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=66.4
Q ss_pred ECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 001303 177 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 256 (1104)
Q Consensus 177 ~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~ 256 (1104)
+==+|.|||.||+||+++.++.-.++|-+ .|.-++.+==+|-. .-
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~~---------------------------------R~ 48 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNPE---------------------------------KE 48 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCCc---------------------------------cc
Confidence 33479999999999999999999999753 56555444333320 01
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 257 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 257 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
..++.+.|.++|+.||+ +|+..++. .++.+.-+++..+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl--~wD~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGI--KPYKVTYA--SDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCC--CCCCceec--ccCHHHHHHHHHHHHHcCCeec
Confidence 23456789999999996 55555443 3455667788899999999998
No 94
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.30 E-value=0.00059 Score=82.33 Aligned_cols=97 Identities=27% Similarity=0.304 Sum_probs=67.4
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|- ..|.-+|..==+|.. +
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd~~-------------------r------------- 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTNPE-------------------K------------- 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCCC-------------------c-------------
Confidence 556668999999999999999999999985 356655554444421 1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-..++.+.|.++|+.||+..| +..+++++ |-....+.-.+|.++|++|...
T Consensus 76 -~~~e~~~~I~~dL~wLGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c~ 126 (554)
T PRK05347 76 -EDQEYVDSIKEDVRWLGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVDD 126 (554)
T ss_pred -CChHHHHHHHHHHHHcCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeCC
Confidence 123466889999999996554 34455543 2233334446999999999754
No 95
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.29 E-value=0.00068 Score=81.44 Aligned_cols=95 Identities=28% Similarity=0.384 Sum_probs=71.0
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 255 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~ 255 (1104)
++==.|.|||.||+|||++.++.-.++| +..|.-+|.+==+|.. .
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~~---------------------------------R 50 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDKE---------------------------------R 50 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCcc---------------------------------c
Confidence 3444799999999999999999999998 5577777776555531 1
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 256 WKDEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 256 ~~~~~~~~i~~ql~~lG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-..++.+.|.+.|+.||+ ||+ .+|+.++ +...-.++..+|.++|++|+..
T Consensus 51 ~~~~~~~~i~~~L~WLGl--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 101 (513)
T PRK14895 51 STKEAVEAIFSGLKWLGL--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYCF 101 (513)
T ss_pred cChHHHHHHHHHHHHcCC--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEec
Confidence 123466789999999995 666 4566544 3456677888999999999764
No 96
>PLN02859 glutamine-tRNA ligase
Probab=97.29 E-value=0.00073 Score=84.12 Aligned_cols=96 Identities=27% Similarity=0.292 Sum_probs=68.2
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|.. .|.-.|..==+|-. +
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp~-------------------r------------- 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNPE-------------------A------------- 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCCC-------------------c-------------
Confidence 5566689999999999999999999999874 56655554444421 1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-..++.+.|.++|+.|| ++|+..++++|- +.. ..+.-.+|.++|+.|...
T Consensus 311 -~~~e~~~~I~edL~WLG--~~~d~~~~qSd~-f~~-~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 -EKKEYIDHIEEIVEWMG--WEPFKITYTSDY-FQE-LYELAVELIRRGHAYVDH 360 (788)
T ss_pred -cchHHHHHHHHHHHHcC--CCCCCcccccHh-HHH-HHHHHHHHHHcCCeEecc
Confidence 12456789999999999 567777766542 222 223446799999999754
No 97
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.27 E-value=0.0007 Score=76.47 Aligned_cols=95 Identities=25% Similarity=0.309 Sum_probs=67.8
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 255 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~ 255 (1104)
++==+|.|||.||+||+++.++.-.++|-. .|.-++.+==+|. +|
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-------------------~R-------------- 51 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-------------------PR-------------- 51 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-------------------Cc--------------
Confidence 344479999999999999999999988754 3555554443332 11
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 256 WKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 256 ~~~~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-..++.+.|.++|+.||+ +|+. .++.++ +...-.++..+|.++|++|...
T Consensus 52 ~~~~~~~~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C~ 102 (299)
T PRK05710 52 EVPGAADAILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYPCF 102 (299)
T ss_pred cchHHHHHHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCceecC
Confidence 123456789999999995 5654 555433 4566778888999999999654
No 98
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.25 E-value=0.00073 Score=79.88 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||+|||++.++.-.++|- ..|.-+|.+==+|.. | -..+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~~-------------------R--------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDKE-------------------R--------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC-------------------c--------------CChH
Confidence 6999999999999999999999875 457767666555541 1 1234
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
+.+.|.+.|+.||+ ||+..|+.++ +...-.++..+|.++|.+|...
T Consensus 50 ~~~~I~~~L~WlGl--~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C~ 95 (433)
T PRK12410 50 KDKEILEILNLFGI--SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFACF 95 (433)
T ss_pred HHHHHHHHHHHcCC--CCCCCeehhc--cHHHHHHHHHHHHHcCCeeeec
Confidence 56789999999996 5657776654 2345667888999999999754
No 99
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.25 E-value=0.0009 Score=79.49 Aligned_cols=94 Identities=29% Similarity=0.328 Sum_probs=67.8
Q ss_pred ECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 001303 177 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 256 (1104)
Q Consensus 177 ~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~ 256 (1104)
+==+|.|||.||||||++.+..-.++|- ..|.-+|.+==+|. + .-
T Consensus 5 ~RFAPSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRIEDTD~---------~------------------------Rs 49 (445)
T PRK12558 5 TRFAPSPTGYLHVGNARTALLNWLYARK--HGGKFILRIDDTDL---------E------------------------RS 49 (445)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeccCCc---------c------------------------cc
Confidence 3347999999999999999988888875 34665655555552 0 11
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 257 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 257 ~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
...+.+.|.++|+.||+.+| ..|+ ...+...+.++..+|.++|++|+..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~D--e~y~--QSer~~~y~~~~e~L~e~G~AY~C~ 98 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWD--RTFR--QSDRFDRYDEAAEKLKAAGRLYPCY 98 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCC--cccc--HHHHHHHHHHHHHHHHHCCCEEEec
Confidence 24466889999999998766 3332 2233357889999999999998764
No 100
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.18 Score=58.20 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=97.6
Q ss_pred EEEEccceeCCCCccccccCCCccCccccccc---cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHH
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVING---ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 761 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g---~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~ 761 (1104)
..+--|+|+..+|+|+-...|.+|-..|+++. -+.+.|..+=++-.++|.|+..|.+.. .|| ++.|
T Consensus 433 ~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav---------ayG--ciKY 501 (656)
T KOG4426|consen 433 EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV---------AYG--CIKY 501 (656)
T ss_pred eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH---------Hhc--chhH
Confidence 34456899999999999999999999999863 234555555556689999998776553 455 4666
Q ss_pred HHHhccCcccccccchHHHHH------------HHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHH-HHH
Q 001303 762 ALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILS-VLN 828 (1104)
Q Consensus 762 ~L~~~~~~~~di~f~~~~i~~------------~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils-~L~ 828 (1104)
+=++.+. -.|.-|+.+++-. +.+.|.-+.+.-.-.. ++.+.......+ .+...+.|-|. .|-
T Consensus 502 aDL~hnR-~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~-~l~~~lkkT~ki---~LDH~~E~kLg~~lL 576 (656)
T KOG4426|consen 502 ADLSHNR-ITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNV-DLIKELKKTGKI---ALDHEKEWKLGKHLL 576 (656)
T ss_pred hhhcccc-ccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchh-hHHHHHHhcCcc---ccCCHHHHHHHHHHH
Confidence 6555433 3477788776532 2223322222110000 000000000001 23334455443 466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHH
Q 001303 829 KAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIE 864 (1104)
Q Consensus 829 ~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie 864 (1104)
++.+.+..++++.-++..+..+|+.. ..|..+|-+
T Consensus 577 kf~e~v~~~~~~L~lh~lC~y~y~l~-t~Ft~FY~~ 611 (656)
T KOG4426|consen 577 KFAEIVEKALDSLFLHVLCDYLYELA-TLFTEFYDS 611 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 67777788888888888888888875 677777744
No 101
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00089 Score=79.98 Aligned_cols=96 Identities=30% Similarity=0.365 Sum_probs=70.9
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==+|.|||.||||||++.++...++|.. .|.-++.+==||- .|.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~-------------------~R~------------ 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP-------------------ERE------------ 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------CCC------------
Confidence 6666789999999999999999999999864 4766666555543 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
..++.+.|.++|+-|| ++|+.. |+.+ ++-..-.+.-.+|.++|+.|...
T Consensus 57 --~~e~~~~I~~~L~WLG--l~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 57 --TPEAEDAILEDLEWLG--LDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred --CHHHHHHHHHHHHhcC--CCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEec
Confidence 2345688999999999 566673 4443 44455667778999999999764
No 102
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.16 E-value=0.001 Score=80.14 Aligned_cols=93 Identities=28% Similarity=0.355 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 001303 178 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 257 (1104)
Q Consensus 178 ~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~ 257 (1104)
==+|.|||.||||||++.++.-.++| ...|.-+|.+==+|.. | -.
T Consensus 5 RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~~-------------------R--------------~~ 49 (470)
T TIGR00464 5 RFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDLE-------------------R--------------NI 49 (470)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc-------------------c--------------CC
Confidence 34799999999999999999999998 3456666655444431 0 12
Q ss_pred HHHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 258 DEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 258 ~~~~~~i~~ql~~lG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
.++.+.|.++|+.||+ +|+ .+|+.++ +...-.++..+|.++|++|+..
T Consensus 50 ~~~~~~i~~~L~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C~ 98 (470)
T TIGR00464 50 EEAEEAILEGLKWLGI--SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRCY 98 (470)
T ss_pred hHHHHHHHHHHHHCCC--CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEecC
Confidence 3466789999999995 566 4555543 2344567778999999999764
No 103
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.14 E-value=0.00082 Score=84.47 Aligned_cols=96 Identities=27% Similarity=0.313 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++|- ..|.-.|..==+|-. +
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR~eDTd~~-------------------r------------- 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLRMDDTNPE-------------------T------------- 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCCCCCC-------------------c-------------
Confidence 667779999999999999999999999974 346555544333320 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-..++.+.|.++|+-||+..| .. +++ .+|.....+...+|.++|++|...
T Consensus 78 -~~~e~~~~I~~dl~wLG~~wd--~~~~~q--S~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 78 -EDTEYVEAIKDDVRWLGFDWG--EHLYYA--SDYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred -CChHHHHHHHHHHHHcCCCCC--CCceEe--ecCHHHHHHHHHHHHHcCCcccCc
Confidence 123567899999999996544 43 444 345666777888999999999754
No 104
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.99 E-value=0.002 Score=70.16 Aligned_cols=86 Identities=31% Similarity=0.383 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 001303 179 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 258 (1104)
Q Consensus 179 pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~ 258 (1104)
=+|.|||.||+||+++.++.-.++|-+ .|.=++.+==+|.. | -..
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~~-------------------R--------------~~~ 50 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDPE-------------------R--------------SRP 50 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCCC-------------------C--------------CCh
Confidence 479999999999999999999999864 56666555444430 0 123
Q ss_pred HHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHhcC
Q 001303 259 EYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEG 303 (1104)
Q Consensus 259 ~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~G 303 (1104)
++.+.|.++|+.||+ +|+. .++.+ ++...-+++..+|.++|
T Consensus 51 ~~~~~I~~dL~wlGl--~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 51 EYVESILEDLKWLGL--DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHHHHcCC--CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 466889999999996 5556 45443 34455677888999999
No 105
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.94 E-value=0.0023 Score=70.14 Aligned_cols=87 Identities=28% Similarity=0.322 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 001303 178 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 257 (1104)
Q Consensus 178 ~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~ 257 (1104)
==+|.|||.||+||+++.++.-.++|- ..|.=.+.+==+|. .+ -.
T Consensus 5 RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~-------------------~r--------------~~ 49 (239)
T cd00808 5 RFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ-------------------ER--------------SV 49 (239)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC-------------------CC--------------Cc
Confidence 347999999999999999999999884 35533333333332 00 01
Q ss_pred HHHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHhcC
Q 001303 258 DEYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEG 303 (1104)
Q Consensus 258 ~~~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~G 303 (1104)
.++.+.|.++|..||+ ||+. .|+.++ +.....++..+|.++|
T Consensus 50 ~~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 50 PEAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred hHHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 3456788999999995 6666 555553 5556677788999888
No 106
>PLN02627 glutamyl-tRNA synthetase
Probab=96.92 E-value=0.0023 Score=77.12 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=70.0
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==+|.|||.||||||++.++.-.++| +..|.-+|.+==+|.. |
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~-------------------R------------- 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA-------------------R------------- 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------C-------------
Confidence 44555789999999999999999999998 5567777776555541 1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
-+.++.+.|.++|+.||+ ||+.. |+-++ +...-.++..+|.++|++|+..
T Consensus 92 -~~~e~~~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 150 (535)
T PLN02627 92 -STKESEEAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSE--RNAIYKQYAEKLLESGHVYPCF 150 (535)
T ss_pred -CChHHHHHHHHHHHHcCC--CCCcCcccCCCCCCeeeec--cHHHHHHHHHHHHHcCCeeecc
Confidence 123466789999999995 66652 33332 3355667788999999999754
No 107
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.83 E-value=0.22 Score=51.13 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=82.3
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHHHH--------HHHHHHHHHHHHHhhhhCCCCCCCCCCCCC-CCChhhHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVGYR--------QWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWI 823 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--------~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~-~~~~~D~wi 823 (1104)
..|.||+||++++.+.. .++.||++.+.... .-..++.|.++-. .....+....... -....++-+
T Consensus 2 ~i~~~a~~~~~l~~~~~-~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~----~~~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKRI-KDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKA----GETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCCC-CCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhC----CCcCccccccchhhcCCHHHHHH
Confidence 57899999999996554 59999998854311 1122233333211 1000000011111 123456667
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 824 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 900 (1104)
Q Consensus 824 ls~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~ 900 (1104)
+..+..+...+..++.+.+++.++..++++. ..+.+ |.+.+ +. ..++.+....|......+..++..++.+|.
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~-ffd~v-~V-~~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSK-FYNAC-PV-LGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHH-HHhcC-cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888899999999999999999999985 44444 44544 22 223333222444555666667777777764
No 108
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.051 Score=64.06 Aligned_cols=98 Identities=29% Similarity=0.402 Sum_probs=69.8
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++-=||-|+|.||||||-...+- -|.... |+=-.+.-||..--+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~~-~~G~LIvRFDDTNPa------------------------------ 245 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQA-YQGKLIVRFDDTNPA------------------------------ 245 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHHh-cCceEEEEecCCCcc------------------------------
Confidence 455558999999999999876543 333322 222345556664322
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEe
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRL 311 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~ 311 (1104)
+=.+++.+.|.+++..|||-.| .+|...+|-..+...=++|.+.|..|-+..|
T Consensus 246 KE~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 246 KENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hhhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 1124566789999999999998 4566677888888889999999999987754
No 109
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.05 E-value=0.04 Score=61.98 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhhcC-CCCceEEEEccceeCCCCccccccCCCccCcccccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 715 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l~g-~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~ 715 (1104)
+.+++...|.||... =.+|-++-- +.+ ..| ..+++.++.+.+|.|||||.||.|+...+.+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKT 214 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCC
Confidence 456788899999632 333333322 222 234 4566699999999999999999987665554
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.02 E-value=0.019 Score=68.03 Aligned_cols=59 Identities=27% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||..... .|-++ -.+.+..| -.+++.++.+.+|.|||||.||.|+..|-
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~--~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQ--RKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHH--HHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 47888889999954322 22222 22334445 56688999999999999999999988775
No 111
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.97 E-value=0.031 Score=62.82 Aligned_cols=58 Identities=28% Similarity=0.221 Sum_probs=40.1
Q ss_pred cCccccccccccc-HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccccc
Q 001303 653 TSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 715 (1104)
Q Consensus 653 ~d~~~~G~Dil~f-W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~ 715 (1104)
.++...|.||... =.+|-++-- +....| -.+.|.++.+.+|+|||||.||.++ ..+.+
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 4788889999643 222333322 222334 4578999999999999999999997 55544
No 112
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.29 E-value=0.035 Score=65.97 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=42.5
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||..... +|-++- .+..+.+| .++..++.+.+|+|||||.||.|+..|-
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~ 246 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE 246 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC
Confidence 57899999999975322 233332 23333343 4578899999999999999999998874
No 113
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=93.39 E-value=0.08 Score=60.20 Aligned_cols=63 Identities=22% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhhcCCCCceEEEEccceeCCCCc-cccccCCC-ccCcccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGN-VIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKS~GN-vIdP~di 713 (1104)
+-.++...|.||... =.+|-++-.+......|-...+++.++...+|. |||||.+| .|+..|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 345688889999753 344444433322222333578888899999999 99999999 7776654
No 114
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.93 E-value=1.4 Score=52.41 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEec------------
Q 001303 149 VEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP------------ 216 (1104)
Q Consensus 149 iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~------------ 216 (1104)
++.-....|++...|........++.+|-..-||.+-..|+||.++.+|.-.++.-.+-.|+.|.-+-
T Consensus 87 ~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 45555666777766765532345678888999999999999999999999999999999999998632
Q ss_pred --cCCCcCC-------hHHHHHHHHHHH----HcCCCccccCHHHHH-------HH--HHH-HHHHHHHHHHHHHHHhcc
Q 001303 217 --GMDHAGI-------ATQVVVEKKLMR----ERKLTRHDIGREQFV-------SE--VWK-WKDEYGGTILRQQRRLGA 273 (1104)
Q Consensus 217 --G~D~~Gl-------p~q~~vek~l~~----~~g~~~~~~~re~f~-------~~--~~~-~~~~~~~~i~~ql~~lG~ 273 (1104)
||--.|- ||+...+..+.. +......+..++-|- +. .|+ +.+-.+....+...|||+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 3434443 444333322211 111111112222221 11 232 456666777788899999
Q ss_pred ccc-cCCccccCChhhHHHHHHHHHHHHhcCcEE
Q 001303 274 SLD-WSRECFTMDEKRSKAVTEAFVRLYKEGLIY 306 (1104)
Q Consensus 274 s~D-W~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 306 (1104)
-+| |+- -+.-+.+..+.+...+...||+.
T Consensus 247 ~FD~y~g----ESqv~~e~~~~~~d~~rs~~l~~ 276 (567)
T KOG1195|consen 247 KFDEYSG----ESQVSNEKMQEALDLLRSANLTE 276 (567)
T ss_pred eeeeccc----hHHHHHHHHHHHHHHHHhcCCcc
Confidence 999 443 23466777788888888888653
No 115
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.91 E-value=0.092 Score=60.70 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=40.0
Q ss_pred CCcCccccccccc-ccHHHHHHHHHHhh-cC---CCCceEEE--EccceeCCCCccccccCCCccCcc
Q 001303 651 YPTSVLETGHDIL-FFWVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDPL 711 (1104)
Q Consensus 651 ~P~d~~~~G~Dil-~fW~arm~~~~~~l-~g---~~PFk~V~--~Hg~v~D~~G~KMSKS~GNvIdP~ 711 (1104)
|.+|+...|.||. ++=++|-++..+.. .| ..| ..++ .|.++...+|+|||||.+|.|...
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCccccc
Confidence 5667888899997 45566776644321 11 234 2332 377777889999999999988544
No 116
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.74 E-value=0.11 Score=52.51 Aligned_cols=50 Identities=28% Similarity=0.173 Sum_probs=34.5
Q ss_pred cCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccC
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 704 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~ 704 (1104)
.++++.|.|+.. ++.....+.-.+.+..+ ...+.+|+|...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 588899999986 43333333333333322 466778999988899999995
No 117
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=92.15 E-value=0.51 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEccceeCCCCccccccCCC
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGN 706 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GN 706 (1104)
...-+++++|.+|+|||||.|+
T Consensus 139 ~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 139 RFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred eEEEeeeeeCCCCCCccCcCCC
Confidence 6677799999999999999998
No 118
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.45 E-value=0.15 Score=64.81 Aligned_cols=79 Identities=25% Similarity=0.319 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCeeeeec--------------ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceE-
Q 001303 475 EAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE- 539 (1104)
Q Consensus 475 ~~vi~~L~~~g~l~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~- 539 (1104)
+-+.-.|.++||+...+. +.-..+.|||||.+|+.+--+|||+++.+.++++++.+ ..+.
T Consensus 138 QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l-----~~l~~ 212 (814)
T COG0495 138 QWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDL-----DKLAT 212 (814)
T ss_pred HHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhh-----hhhcc
Confidence 346678899998765432 22344789999999999999999999999999999887 4555
Q ss_pred EeccccHHHHHHHhccCCC
Q 001303 540 LIPRQYTAEWRRWLEAIRD 558 (1104)
Q Consensus 540 ~~P~~~~~~~~~wl~~l~D 558 (1104)
..|+..+..-.+|+..-..
T Consensus 213 ~wPE~Vk~mq~nWIg~s~g 231 (814)
T COG0495 213 LWPETVKGMQRNWIGPSEG 231 (814)
T ss_pred CCchhHHHHHHcCcCCCCC
Confidence 5899999888888864333
No 119
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.45 E-value=0.14 Score=60.60 Aligned_cols=61 Identities=26% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhh-cC----CCCceEEEE--ccceeCCCCccccccCCCccCccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKL-GG----EVPFTKVYL--HPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l-~g----~~PFk~V~~--Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
|-+|+.-.|.||.. .=.+|-++..+.. .| .+| ..++. +..|.+.+|+|||||.||.|...|
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeecC
Confidence 55677778999973 5567777654321 22 134 23332 467888899999999999996543
No 120
>PLN02563 aminoacyl-tRNA ligase
Probab=91.27 E-value=0.23 Score=65.04 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHcCCeeeeec--------------ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCc
Q 001303 472 KAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 537 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~ 537 (1104)
..-..+...|-++|++...+. .+...++|+|||.+++.+...|||++++++++++++.+ + .
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l---~--~ 286 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDL---D--D 286 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhh---h--h
Confidence 445678889999998765432 12335789999999999999999999999999999998 3 4
Q ss_pred eEEeccccHHHHHHHhccCCC
Q 001303 538 LELIPRQYTAEWRRWLEAIRD 558 (1104)
Q Consensus 538 i~~~P~~~~~~~~~wl~~l~D 558 (1104)
+. .|+..++.-.+||-.-.-
T Consensus 287 ~~-wp~~v~~~q~nwiG~s~g 306 (963)
T PLN02563 287 LD-WPESIKEMQRNWIGRSEG 306 (963)
T ss_pred cC-CCHHHHHHHHHhccccce
Confidence 45 699999999999865433
No 121
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.18 E-value=0.51 Score=56.65 Aligned_cols=95 Identities=27% Similarity=0.313 Sum_probs=59.1
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+.+-=||-|||.||||||-..-+-==++++ +.|..-|. +|... +|
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDTN-----------------------PE------- 293 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDTN-----------------------PE------- 293 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCCC-----------------------cc-------
Confidence 566679999999999998643322222332 22322221 23211 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEc
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD 308 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 308 (1104)
.=..+|-..|++...-|| |.-...|.+.+|-....+.=+.|.++|+.|-.
T Consensus 294 kEee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 294 KEEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred hhhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 112445667777777777 55667898888877777777789999998854
No 122
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=90.85 E-value=0.24 Score=57.26 Aligned_cols=59 Identities=29% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCc--cccccC-CCccCcccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSL-GNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~--KMSKS~-GNvIdP~di 713 (1104)
|.+|+...|.||.. +=.+|-++-. +....| .++.|.++.+.+|. |||||. ||.|+..|=
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 56788889999974 4445555433 233345 55679999999998 999999 999987653
No 123
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=89.94 E-value=0.22 Score=57.60 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=38.5
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhh-cC---CCCceEEEEccc---eeCCCCccccccCCC-ccCccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYLHPM---IRDAHGRKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l-~g---~~PFk~V~~Hg~---v~D~~G~KMSKS~GN-vIdP~d 712 (1104)
|-+|+...|.||.. +=++|-++--+.- .| ..| ..++|.+ +.+.+|+|||||.+| .|...|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 44677888999974 5666766644431 11 245 4455555 556677899999997 765544
No 124
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.80 E-value=0.56 Score=51.69 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=33.4
Q ss_pred cCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCC
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 706 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GN 706 (1104)
.+..+-|.|.+ ....++..+.-.+.-..| .+.-++++++.+|+||||+.||
T Consensus 119 ithViRG~D~~-~~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 119 ITHVIRGEEHL-SSTPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred CCEEEEChhhh-hChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC
Confidence 34445577754 344455444444433334 5667788889999999999999
No 125
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.75 E-value=0.32 Score=63.18 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHcCCeeeeec--------------ccc-cccccccCCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 472 KAREAVNEALKKKGLYRGAKD--------------NEM-RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~~--------------~~~-~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
++-..+...|-++|++...+. .+. ..++|+|||.+++.+..+|||++++++++++++.+ .
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l-----~ 204 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDL-----E 204 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHH-----h
Confidence 344567788889998654221 111 12789999999999999999999999999999988 4
Q ss_pred ceEEeccccHHHHHHHhccCCCe
Q 001303 537 KLELIPRQYTAEWRRWLEAIRDW 559 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~~l~DW 559 (1104)
.+...|++.++...+||..-.-.
T Consensus 205 ~~~~wp~~v~~~q~~wig~s~g~ 227 (842)
T TIGR00396 205 ELDHWPESVKEMQRNWIGKSEGV 227 (842)
T ss_pred hhccccHHHHHHHHhcccccceE
Confidence 45668999999999998654433
No 126
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.73 E-value=0.33 Score=57.27 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=38.0
Q ss_pred cCcccccccccccHHHHHHHHHHhh-cCCCCceEEEEccceeCCCCccccccCCCccCc
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDP 710 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l-~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP 710 (1104)
.|+.+.|.|| |...|+..-+.= .|..+ .-.++++++.+.+|.|||||.||.++.
T Consensus 181 ~dlq~GG~DQ---~~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred cchhcCChHH---HHHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCcccccCCCceEc
Confidence 5688999999 555444432211 23333 567889999999999999999995543
No 127
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.44 E-value=0.22 Score=58.37 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=40.1
Q ss_pred CcCcccccccccc-cHHHHHHHHHHh-hcC-CCCceEEEEccceeCCCCccccccC-CCccCccc
Q 001303 652 PTSVLETGHDILF-FWVARMVMLGIK-LGG-EVPFTKVYLHPMIRDAHGRKMSKSL-GNVIDPLE 712 (1104)
Q Consensus 652 P~d~~~~G~Dil~-fW~arm~~~~~~-l~g-~~PFk~V~~Hg~v~D~~G~KMSKS~-GNvIdP~d 712 (1104)
-.++...|.||.. +=++|-++-.+. ..| ..| ..+.|.++.+.+|.|||||. +|.|...|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 4567778999974 556666664441 012 234 45567888899999999998 67887665
No 128
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=89.13 E-value=0.31 Score=56.40 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=40.7
Q ss_pred hCCcCcccccccccc-cHHHHHHHHHHhh-cCC--CCc-eEEE-EccceeCCCC-ccccccCCCccCccc
Q 001303 650 FYPTSVLETGHDILF-FWVARMVMLGIKL-GGE--VPF-TKVY-LHPMIRDAHG-RKMSKSLGNVIDPLE 712 (1104)
Q Consensus 650 ~~P~d~~~~G~Dil~-fW~arm~~~~~~l-~g~--~PF-k~V~-~Hg~v~D~~G-~KMSKS~GNvIdP~d 712 (1104)
.|.+|+...|.||.. +=.+|-++--+.. .+. .+. ..++ -|.+|.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 367788889999974 5567777654432 121 111 1122 1567777777 899999999886555
No 129
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.08 E-value=0.35 Score=55.10 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhh-c-CCCCceEEEEcc--ceeCCCC-ccccccCCC-ccCccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKL-G-GEVPFTKVYLHP--MIRDAHG-RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l-~-g~~PFk~V~~Hg--~v~D~~G-~KMSKS~GN-vIdP~d 712 (1104)
|-+++.-.|.||-- .=.+|=++.-+.. . ...|--..+.|. .+.+.+| +|||||.+| +|...|
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 34455667888863 4455666544331 1 112223677777 8889999 899999999 665544
No 130
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=88.04 E-value=0.48 Score=62.98 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEK-IINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFEN 1095 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~-kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~ 1095 (1104)
-.+++|++||+|++++++++++...- +++++.|++++|+.+ ++.++++++++++++.+..
T Consensus 845 ~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999998 899999999999999 8999999999999999987
No 131
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=87.52 E-value=0.46 Score=55.99 Aligned_cols=59 Identities=27% Similarity=0.233 Sum_probs=39.0
Q ss_pred CCcCcccccccc-cccHHHHHHHHHHhhcCCCCceEEEEccceeCC-CC-ccccccCCC-ccCccc
Q 001303 651 YPTSVLETGHDI-LFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Di-l~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~-~G-~KMSKS~GN-vIdP~d 712 (1104)
|.+|+...|.|| -++=++|-++-.+.. ...| -++.|++|.+. +| .|||||.+| .|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~-~~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKI-KKKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCC-CCCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 567888889999 455556666543321 1123 34478888887 45 799999987 576654
No 132
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=87.49 E-value=0.52 Score=55.60 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=37.2
Q ss_pred CcCccccccccccc-HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccc
Q 001303 652 PTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 652 P~d~~~~G~Dil~f-W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
-.|+.+.|.||... =..++++- .+.+..+| .+.+.++...+|.|||||.||.|+..+
T Consensus 177 ~~di~~gG~DQ~~ni~~g~dLar--~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVDLQIGGSDQWGNIRKGRDLIR--RNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCCeeEecchhHHHHHHHHHHHH--HhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 35688889999643 22333332 22233333 356667777889999999999998654
No 133
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=87.48 E-value=2.9 Score=38.48 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGNSN 1104 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~~~ 1104 (1104)
+..||.++++++......++.++.+|.. ...+++-++.-++.+..+.+.+...++.|..|.+.|
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~----~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRR----RELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcc----cCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 5689999999999999999999999986 456777777777888888888888888888887644
No 134
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=87.23 E-value=0.55 Score=53.16 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=38.5
Q ss_pred CcCcccccccccc-cHHHHHHHHHHhhc-C-CCCceEEEEc--cceeCCCC--ccccccCC-CccCccc
Q 001303 652 PTSVLETGHDILF-FWVARMVMLGIKLG-G-EVPFTKVYLH--PMIRDAHG--RKMSKSLG-NVIDPLE 712 (1104)
Q Consensus 652 P~d~~~~G~Dil~-fW~arm~~~~~~l~-g-~~PFk~V~~H--g~v~D~~G--~KMSKS~G-NvIdP~d 712 (1104)
-+++...|.||.. +=.+|-++--+.-. | -.|-...++| .+|.+.+| .|||||.| |.|...|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 3466667999964 34445444332210 0 0222366677 88888877 49999999 9998765
No 135
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.00 E-value=0.64 Score=54.63 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=21.3
Q ss_pred EccceeCCCCccccccCCCccCccc
Q 001303 688 LHPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 688 ~Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
.|..|.+.+|+|||||.||.|...|
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC
Confidence 3688889999999999999887655
No 136
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.32 E-value=1.3 Score=57.58 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHcCCeeeeec--------------ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 471 FKAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 471 ~~ar~~vi~~L~~~g~l~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
.++-..+...|-++|++..... .+...++|+|||.+++.+..+|||++++++++++++.+ +
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l---~-- 206 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDL---D-- 206 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHH---H--
Confidence 3455678888999998765321 12234789999999999999999999999999999988 3
Q ss_pred ceEEeccccHHHHHHHhccCCCeeeeccC-CCcccceEEEE
Q 001303 537 KLELIPRQYTAEWRRWLEAIRDWCVSRQL-WWGHQIPAWYV 576 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~~l~DWcISRq~-~WG~pIP~~~~ 576 (1104)
.+.-+|++.+..-.+||....-+.|.=.. .-+..|++|-.
T Consensus 207 ~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 207 KLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred hhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 33235999888888998755555442111 11245666653
No 137
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.22 E-value=0.67 Score=53.76 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=40.7
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhh-cC---CCCceEEEE-c-cceeCCCCc--cccccCC---CccCccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYL-H-PMIRDAHGR--KMSKSLG---NVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l-~g---~~PFk~V~~-H-g~v~D~~G~--KMSKS~G---NvIdP~d 712 (1104)
|.+|+...|.||.. +=++|-++--+.. .| ..| ..++. | .+|...+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 46788889999974 5666776644321 12 245 33332 2 668888887 9999999 7887655
No 138
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.27 E-value=0.43 Score=58.16 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=42.8
Q ss_pred cccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc
Q 001303 496 RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 554 (1104)
Q Consensus 496 ~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~ 554 (1104)
.-+++||||.+||-....||||+.+++++++++.+ + .+.=.|+ .++.-.+||-
T Consensus 197 ~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L---~--~L~~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 197 ADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGL---E--TLPEWPE-VKDMQRNWIG 249 (876)
T ss_pred ccCccccccchhhHHHHHHHHhhhhHHHHHHHHHH---H--hhhhhhh-HHHHHHhhcc
Confidence 34789999999999999999999999999999998 3 4433455 5566667764
No 139
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=83.02 E-value=3 Score=50.76 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=59.4
Q ss_pred CcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccc-cCchhHHHHhhcCCCC
Q 001303 654 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLEEGNLD 732 (1104)
Q Consensus 654 d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g-~~l~~l~~~l~~~~l~ 732 (1104)
+..+-|.|.+. ...+.+.+.-.+.-..| .+.-++++++.+|.||||..| .+...++++. +.-+.+...+.
T Consensus 199 thvIrG~d~~~-~t~~~~~l~~aLg~~~p--~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~----- 269 (470)
T TIGR00464 199 THVIRGEDHIS-NTPKQILIYQALGWKIP--VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLA----- 269 (470)
T ss_pred CEEEECchhhc-CHHHHHHHHHHcCCCCC--eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHH-----
Confidence 44456777654 23333333333332333 566667788899999999999 5655555542 12222222221
Q ss_pred hHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH
Q 001303 733 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 733 ~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
..|....-... ..--.+++|++.++..+. .++.||++.+.-
T Consensus 270 -------~lG~~~~~~~e-~~~~~~~i~~f~l~~~~~-~~~~fd~~kL~~ 310 (470)
T TIGR00464 270 -------LLGWSPPDDQE-FFSLEELIEIFSLNRVSK-SPAKFDWKKLQW 310 (470)
T ss_pred -------HcCCCCCCccc-cCCHHHHHHhcCcccCCC-CCCeecHHHHHH
Confidence 11211100000 012248899887775444 588999988653
No 140
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.86 E-value=9 Score=45.11 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc
Q 001303 155 SWWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 221 (1104)
Q Consensus 155 ~~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~ 221 (1104)
-.+...|+|-...+ ..+++|++.+|. -|||.+||||... -..+.+++. .|+.|.+..+=+|+
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~ha 109 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDEA 109 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchHH
Confidence 44566777665433 234567777764 4679999999653 345666666 78888877775553
No 141
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=79.85 E-value=2.5 Score=47.66 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=24.5
Q ss_pred CCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 183 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 183 ~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
||| .||+||.+. -..+.++++ .|+++.+..|=.|
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~ 42 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQT 42 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCc
Confidence 699 799999777 334556655 6999988777433
No 142
>PLN02486 aminoacyl-tRNA ligase
Probab=77.73 E-value=9.3 Score=45.20 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 157 WENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 157 W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
|-..|+|-...+ ..+++|++.+| --||| .|||||.... ..+..+++..|..+... -+|
T Consensus 49 ~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~-iaD 115 (383)
T PLN02486 49 FLRRGVFFAHRDLEEILDAYEKGEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQ-LTD 115 (383)
T ss_pred ccccceeeeccCHHHHHHHHhcCCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEE-ecC
Confidence 445666655433 24567888887 46798 5999995543 34445555656665555 335
No 143
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=76.09 E-value=6.1 Score=44.76 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 182 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 182 y~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
-|||.|||||.++.+. .+.+.++. |+++.+..+=+|
T Consensus 7 ~PTG~lHLG~~~~al~--~~~~lQ~a-g~~~~~~IaD~h 42 (280)
T cd00806 7 QPSGSLHLGHYLGAFR--FWVWLQEA-GYELFFFIADLH 42 (280)
T ss_pred CCCchhhHHHHHHHHH--HHHHHHhC-CCCEEEEecchH
Confidence 3699999999887433 23333433 888887776444
No 144
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=74.76 E-value=9.1 Score=42.23 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
.+-++|++-|++..+....++.|+++.+..
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 466899999999888877899999887765
No 145
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=74.42 E-value=3.7 Score=44.48 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=31.4
Q ss_pred cccccccccccHHHHHHHHHHhhcCC-CCceEEEEccceeCCCCccccccCC
Q 001303 655 VLETGHDILFFWVARMVMLGIKLGGE-VPFTKVYLHPMIRDAHGRKMSKSLG 705 (1104)
Q Consensus 655 ~~~~G~Dil~fW~arm~~~~~~l~g~-~PFk~V~~Hg~v~D~~G~KMSKS~G 705 (1104)
+++.|.|+. .++.++..+.-.+.-. .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 457788865 3344444333222212 3434566779999888999999987
No 146
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=72.63 E-value=10 Score=45.42 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=46.7
Q ss_pred Eecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1031 LKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1031 l~l~-vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
+.+. +|.++.++.|+++++++++++++++.++..-. +.+.|+.+++++++++++.++.+++
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----------k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-----------KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4446 89999999999999999999999999876432 5566667777777777776666553
No 147
>PLN02486 aminoacyl-tRNA ligase
Probab=72.01 E-value=3.9 Score=48.33 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=34.3
Q ss_pred ccccccccc-ccHHHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCccc
Q 001303 655 VLETGHDIL-FFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 655 ~~~~G~Dil-~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~d 712 (1104)
+.-.|.||. ++=++|-++-- +....| .++.|.++...+| .|||||.+| .|...|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 344588876 34555555533 333356 3444567776776 799999988 687766
No 148
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=70.65 E-value=3.7 Score=46.26 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc
Q 001303 182 NVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 221 (1104)
Q Consensus 182 y~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~ 221 (1104)
-||| .|||||.+.. -.+.|++++ |++|.+..|=.|+
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a 44 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATA 44 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCee
Confidence 3699 8999997752 367788875 9999888875543
No 149
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=69.72 E-value=3.8 Score=51.73 Aligned_cols=58 Identities=24% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCcCccccccccc-ccHHHHHHHHHHhhcCCCCceE-EEEccceeCCCC--ccccccC-CCccCccc
Q 001303 651 YPTSVLETGHDIL-FFWVARMVMLGIKLGGEVPFTK-VYLHPMIRDAHG--RKMSKSL-GNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil-~fW~arm~~~~~~l~g~~PFk~-V~~Hg~v~D~~G--~KMSKS~-GNvIdP~d 712 (1104)
|.+|+...|.||. ++=++|-++-.+ |..| +. ++.|.++.+.+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 4567777899995 344555554322 3222 22 345677776653 6999999 68987766
No 150
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=68.51 E-value=19 Score=42.48 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
-|-|||.||+|-++|...-=+++|- ..|.-+|.+=-+|-.-+ +..
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq~R~---------------------------------v~g 83 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQKRL---------------------------------IRG 83 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEecccccccc---------------------------------ccc
Confidence 5888999999999988777777763 56888888777774210 111
Q ss_pred HHHHHHHHHHHhccccccCCccc--cCCh----hhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSRECF--TMDE----KRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r~~~--T~d~----~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
...+|.+.|+-+|+..|=. +.+ ..-| +..+.-..+-.+|.+.|..||..
T Consensus 84 s~e~i~~~L~w~nl~~DEg-P~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCF 138 (524)
T KOG1149|consen 84 SEEAIYEDLKWANLDWDEG-PGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCF 138 (524)
T ss_pred hHHHHHHHHHhcCCCcccC-CCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEec
Confidence 2357788888888665511 111 1112 12222334445788899999853
No 151
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=66.92 E-value=30 Score=33.32 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHH
Q 001303 817 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 896 (1104)
Q Consensus 817 ~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l 896 (1104)
...++-++..+..+...+..+++.++++.+++.++++. ..|..+| +.+ +.+..++......|-........++..++
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~-~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV-RILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS--STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc-cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999986 6666666 433 33333332100245555555666677777
Q ss_pred HHHh
Q 001303 897 RLLH 900 (1104)
Q Consensus 897 ~LL~ 900 (1104)
.||.
T Consensus 109 ~llg 112 (119)
T PF05746_consen 109 DLLG 112 (119)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7764
No 152
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.80 E-value=1.4e+02 Score=36.25 Aligned_cols=192 Identities=13% Similarity=0.108 Sum_probs=99.5
Q ss_pred CCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcC------CCChHHHHHHHhccCCCCCCCCCCC
Q 001303 681 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG------NLDPKELEVAKKGQKADFPNGIPEC 754 (1104)
Q Consensus 681 ~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~------~l~~~e~~~a~~~~~~~fp~~i~~y 754 (1104)
.|+.+| .-|+| +=||.-+|+++-..|+++... +.+++...+. +.+|+++.. -.
T Consensus 355 ~~~qHV-~~G~v-----~GmsTRkG~~~fl~dil~e~r-e~m~e~M~s~~t~~~~~~~~~~vad--------------~l 413 (567)
T KOG1195|consen 355 KKLQHV-NFGRV-----QGMSTRKGKVVFLDDILEEAR-EQMLEVMASNKTKPVQMANPDEVAD--------------RL 413 (567)
T ss_pred hhccee-ccccc-----ccccccCCceeeHHHHHHHHH-HHHHHHHHhccCCCCCCCCHHHHHH--------------HH
Confidence 454444 44555 479999999999999997321 1111111111 122333221 46
Q ss_pred CchHHHHHHHhccCcccccccchHHHHHHHH--HHHHHHHHHH--HHhhhhCCCCCCCCC--CCCCCCC-hhhHHHHHHH
Q 001303 755 GTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVR--FSMSKLGEGFVPPLK--LHPHNLP-FSCKWILSVL 827 (1104)
Q Consensus 755 GaDalR~~L~~~~~~~~di~f~~~~i~~~r~--f~nKl~N~~r--f~l~~~~~~~~p~~~--~~~~~~~-~~D~wils~L 827 (1104)
|+-|+.+-.+... -..+..|+++++-.... =.--.++-+| -+..++++ +.+... .....+. +.-.-++..|
T Consensus 414 g~sAviv~d~k~r-r~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~-~~~~~l~~~d~~~l~ep~~~~Lv~~L 491 (567)
T KOG1195|consen 414 GLSAVIVQDFKGR-RISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSD-VTLDDLDEIDFSLLTEPDALLLVRLL 491 (567)
T ss_pred hhHHHHHHHHHHH-hcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccc-cCchhhhccchhhcCChhHHHHHHHH
Confidence 7777777555432 33478899887643110 0000111111 11222221 212110 1111111 1123477889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001303 828 NKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 899 (1104)
Q Consensus 828 ~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL 899 (1104)
..+.+.+..+++.++.+..+..+++.. ..++..|=. -|..+...+..-+|.........+|.+++++|
T Consensus 492 ~~fp~vve~s~e~lE~~~lV~YL~~La-~a~s~~yk~---l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lL 559 (567)
T KOG1195|consen 492 LQFPEVVEKSMEQLEPCTLVTYLFKLA-HAVSSAYKI---LWVKDSPMEIALARLLLFSAVRQVLNNGMRLL 559 (567)
T ss_pred hhhHHHHHHHHHhhcchhHHHHHHHHH-HHHHhHHhh---eeecCCcHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 999999999999999999999998876 566665521 12222222222234444444455666777776
No 153
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=64.43 E-value=17 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEccceeCCCCccccccCCC
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGN 706 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GN 706 (1104)
...-+++++|.+|+||||+.|.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~ 242 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNA 242 (433)
T ss_pred eEEEeeeeeCCCCCeeecccCh
Confidence 4455599999999999999984
No 154
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.36 E-value=36 Score=36.27 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=57.1
Q ss_pred EEEEecc----ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1028 KVYLKVE----VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1028 ~v~l~l~----vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+|=.+. ......+.+|.++++.++.+++.++.++... =..+-+.+-+....+++.+++.+++.+++.++.+..
T Consensus 54 n~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 54 NYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred eEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554 5567778899999999999999999888865 335566667777888888999999999988886654
No 155
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=62.39 E-value=13 Score=44.38 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=28.5
Q ss_pred CcEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 172 PSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
+++.+.+|. -||| +||+||.+. -..+.++++ .|+++.++.|=
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd 74 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG 74 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC
Confidence 345566653 5699 599999874 245555554 69998887763
No 156
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=60.56 E-value=18 Score=44.28 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=32.6
Q ss_pred CcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCc
Q 001303 654 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 707 (1104)
Q Consensus 654 d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNv 707 (1104)
+-.+-|.|++. ...+.+.+.-++.-..| ...-+++|++.+|.||||+.|.+
T Consensus 198 thVIRG~d~~~-~t~~q~~l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~~ 248 (513)
T PRK14895 198 THIIRGDDHLT-NAARQLAIYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGAL 248 (513)
T ss_pred CEEEECchHhh-hHHHHHHHHHHcCCCCC--eEEEEEeEEcCCCCccccccCch
Confidence 33445666543 33344444344433334 67777999999999999999874
No 157
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=59.04 E-value=10 Score=43.97 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=27.9
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
+++++.+| --|||.+||||... +.. +.++++ .|+++.+..|=.|
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~~-~~~--~~~lq~-~g~~~~i~IaD~h 72 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLLT-MNK--LADLQK-AGFKVTVLLADWH 72 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhHH-HHH--HHHHHH-CCCeEEEEEccch
Confidence 34555554 35689999999652 222 666666 3888777666444
No 158
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=58.54 E-value=8.6 Score=39.22 Aligned_cols=23 Identities=35% Similarity=0.842 Sum_probs=19.4
Q ss_pred HHHHHHHCCCeeeEeccCCCcCC
Q 001303 201 IIRWRRMSGYNALWVPGMDHAGI 223 (1104)
Q Consensus 201 ~~Ry~rm~G~~Vl~~~G~D~~Gl 223 (1104)
++||.|+.||+|++..+.++.-+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i 34 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI 34 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH
Confidence 69999999999999998765433
No 159
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=58.54 E-value=8.4 Score=45.58 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=27.6
Q ss_pred cEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 173 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 173 ~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
++.+.+| --||| .|||||... --.+.|+++ .|++|.++.|
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 3455555 34699 899999774 233556665 6999988876
No 160
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.06 E-value=16 Score=43.52 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 183 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 183 ~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
||| +|||||..... .+ |.....|++|..+.|
T Consensus 41 PTa~slHlGhlv~l~---kL-~~fQ~aGh~~ivLig 72 (401)
T COG0162 41 PTAPSLHLGHLVPLM---KL-RRFQDAGHKPIVLIG 72 (401)
T ss_pred CCCCccchhhHHHHH---HH-HHHHHCCCeEEEEec
Confidence 499 89999976532 23 334557999999887
No 161
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=56.96 E-value=87 Score=28.08 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~ 1098 (1104)
....+.+++..++.+..-|++++--+.+ +|...+..-..++.+|+.++..++..+.
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~------~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRS------LPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT------S-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788888888888888888877663 4999999999999999999999998775
No 162
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=56.74 E-value=33 Score=42.24 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=49.4
Q ss_pred EEccceeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHH
Q 001303 687 YLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALR 760 (1104)
Q Consensus 687 ~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR 760 (1104)
+.|...++..|.||||++..-.-=.-.++| -|+.+|+.+ .|-++|+|
T Consensus 234 ~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrr---------------------------G~~peAi~ 286 (523)
T PLN03233 234 IHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRR---------------------------GIDIDALK 286 (523)
T ss_pred eeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHC---------------------------CCCHHHHH
Confidence 466777789999999997321100001111 123444433 67799999
Q ss_pred HHHHhccCcccccccchHHHHHH-HHHHHH
Q 001303 761 FALVSYTAQSDKINLDIQRVVGY-RQWCNK 789 (1104)
Q Consensus 761 ~~L~~~~~~~~di~f~~~~i~~~-r~f~nK 789 (1104)
=|++..+....|..++++.+... |+.++.
T Consensus 287 ~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~ 316 (523)
T PLN03233 287 MFMCSQGASRRVVNLDWAKFWAENKKEIDK 316 (523)
T ss_pred HHHHHhCCCCCCceecHHHHHHHHHHHhcc
Confidence 99999888888899999888753 444444
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.89 E-value=82 Score=32.78 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
+++.++..|+.++..+++++..++..|++ +.+.|.. +.-+..+.++++|++.+++.|+.|+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~---L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS---LSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888888888888888874 2555533 23566777788888888888887775
No 164
>PF14282 FlxA: FlxA-like protein
Probab=53.89 E-value=63 Score=31.13 Aligned_cols=56 Identities=13% Similarity=0.257 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
+.+..+++|++++..|+++|..+..- ...+++. ...+...++.+|..|+..|..+.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-------~~~~~e~---k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-------SDLDAEQ---KQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999887753 1223332 24555666666666666666554
No 165
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=53.10 E-value=32 Score=41.25 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCcEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc
Q 001303 171 KPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 221 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~ 221 (1104)
++++.+..| --||| +||+||+... -.+.++ ...|++++++.|--|+
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~l---~~l~~l-q~~G~~~~~ligd~ta 77 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVPL---MKLKRF-QDAGHRPVILIGGFTG 77 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHHH---HHHHHH-HHcCCeEEEEEccccc
Confidence 345666666 35798 5999995542 223444 4579999988886553
No 166
>PLN02886 aminoacyl-tRNA ligase
Probab=52.47 E-value=12 Score=44.20 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=19.0
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEec
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP 216 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~ 216 (1104)
|||.+||||.++.+ .-+++++. |+++.+..
T Consensus 55 PSG~lHLGnylGai--~~~v~lQ~--~~~~~~~I 84 (389)
T PLN02886 55 PTGSIHLGNYLGAI--KNWVALQE--TYDTFFCV 84 (389)
T ss_pred CCCccHHHHHHHHH--HHHHHHhc--cCCEEEEE
Confidence 48999999976544 23444444 77765443
No 167
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=51.59 E-value=43 Score=37.10 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=22.7
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
.|-++|++-|++..+-...+..++++.+..
T Consensus 199 G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 199 GIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 466899998888877766777787776654
No 168
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.42 E-value=51 Score=41.89 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQE-------DNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e-------~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
.+++++|++++++++++++.++..|++|.+-...+..... +.+++++++.++-+.+.+.++++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999988654433322222 33334444444444555444444
No 169
>PRK11020 hypothetical protein; Provisional
Probab=50.97 E-value=62 Score=31.34 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
++.+|+.+|..+|++++..+...+.+= +.+.++++..|++.++..|++++
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rg----------------d~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRG----------------DAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887777766665432 33444445555555555554443
No 170
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=49.84 E-value=32 Score=41.24 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGG 262 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~ 262 (1104)
|||.|||||.++.+-. .++.+...|+++.+... |-|-+-. .+ ..++. ++ +..
T Consensus 11 PTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT~---------------~~--dp~~l----r~----~~~ 62 (431)
T PRK12284 11 TTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALIK---------------CD--DPARI----QR----STL 62 (431)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhccC---------------CC--CHHHH----HH----HHH
Confidence 7999999997665432 34444456888766544 4443310 01 11111 12 223
Q ss_pred HHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHhcCcEEEc
Q 001303 263 TILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYRD 308 (1104)
Q Consensus 263 ~i~~ql~~lG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~~~GlIyr~ 308 (1104)
.+...+...|+..+=...|+-+| |.+ .-..|++..+-..|.+-|-
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 35667777886655333344444 544 3456777777777776554
No 171
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=49.58 E-value=13 Score=42.18 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=28.3
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
+++.+.+|. -|||.|||||.... ..+.++++ .|++|.+..|=+|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIADLH 47 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEHHH
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEecchh
Confidence 345555542 46999999987754 33444555 8999998877443
No 172
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=48.87 E-value=70 Score=35.74 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-|+..+..-++.+++-++.+.++|++.|... +-.+++ -+-+.+|.+.+.||+.++..+..|.+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka----~~~~d~-l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKA----KTVEDL-LEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777788888888888888888888743 334444 45677889999999999998887764
No 173
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=48.48 E-value=16 Score=43.78 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.6
Q ss_pred CCCcccc
Q 001303 38 RSPYASS 44 (1104)
Q Consensus 38 ~~~~~~~ 44 (1104)
+-|+...
T Consensus 276 ~~P~~~~ 282 (429)
T PRK00247 276 KYPLTDE 282 (429)
T ss_pred hcCCCcc
Confidence 4555543
No 174
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=47.92 E-value=50 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEccceeCCCCccccccCCC
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGN 706 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GN 706 (1104)
...-+++|++.+|+||||+.|.
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~ 247 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG 247 (445)
T ss_pred eEEEcccccCCCcccccccCCC
Confidence 5666699999999999999875
No 175
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=46.20 E-value=49 Score=41.13 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=48.7
Q ss_pred eEEEEccceeCCCCccccccCC-CccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCc
Q 001303 684 TKVYLHPMIRDAHGRKMSKSLG-NVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 756 (1104)
Q Consensus 684 k~V~~Hg~v~D~~G~KMSKS~G-NvIdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGa 756 (1104)
..+.-++++++..|+|+||++. ..+.- -.+.| .++.+|+.+ .+-+
T Consensus 314 P~~~h~~~l~~~~~~kLskk~k~~~l~~-g~~~gWdDPr~~ti~~lrrr---------------------------G~~p 365 (560)
T TIGR00463 314 PEFIHWGRLKINDVRTLSTSSKLKGIVR-GDYSGWDDPRLPTLRAVRRR---------------------------GITP 365 (560)
T ss_pred CeEEEEcceecCCCcEecchhhhhhhhc-cCccCcCCccHHHHHHHHHC---------------------------CCCH
Confidence 3788889999999999999873 11110 01111 123333333 5779
Q ss_pred hHHHHHHHhccCcccccccchHHHHH
Q 001303 757 DALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 757 DalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
+|+|-|++..+....|..++++.+.+
T Consensus 366 eAi~~f~~~~G~s~~~~~i~~~~l~~ 391 (560)
T TIGR00463 366 EAIRNFMLSIGVKRNDVNLSWKNIYA 391 (560)
T ss_pred HHHHHHHHHhCCCCCCceeeHHHHHH
Confidence 99999999988877899999887765
No 176
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=44.95 E-value=73 Score=35.37 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHH
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKL 1086 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~ 1086 (1104)
.|.+.-++.|+.-++.+...|+....... +...|.-|-+.++..|+..
T Consensus 234 ldK~~g~e~l~~Ai~~i~~~I~~~~G~~~----V~~~pk~vte~d~~~l~~~ 281 (304)
T KOG2916|consen 234 LDKTKGLEVLEEAIEVIISKIEEYGGTFT----VIMEPKLVTETDEAELARR 281 (304)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhCCEEE----EEeCCeecccccHHHHHHH
Confidence 67777788899888888888887776554 3556667777777777773
No 177
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=44.22 E-value=45 Score=41.06 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCceEEEEccceeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCC
Q 001303 681 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 754 (1104)
Q Consensus 681 ~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~y 754 (1104)
.|..--+.| ++.+|.||||+++...-=.-+++| .++.+|+.+ .|
T Consensus 226 ~P~~~~F~r---ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrr---------------------------G~ 275 (522)
T TIGR00440 226 RPAQYEFSR---LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRR---------------------------GY 275 (522)
T ss_pred CCceEEEEE---ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHC---------------------------CC
Confidence 364445555 578999999999764211112222 134445444 67
Q ss_pred CchHHHHHHHhccCcccccccchHHHHH
Q 001303 755 GTDALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 755 GaDalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
-++|||=|++..+....+...++..+..
T Consensus 276 ~PeAi~nfl~~lG~s~~~~~~e~~~l~~ 303 (522)
T TIGR00440 276 TPASIREFCNRIGVTKQDNNIEVVRLES 303 (522)
T ss_pred CHHHHHHHHHHhCCCCCCCceehhhHHH
Confidence 7999999998876644444445555543
No 178
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=44.17 E-value=14 Score=42.88 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=27.6
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
+.+++| =-|||.|||||.++.... ++....|++|.+..+=.|
T Consensus 3 ~~v~~G-~~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 3 FRVLTG-IQPSGKMHLGHYLGAIQT----KWLQQFGVELFICIADLH 44 (328)
T ss_pred CEEEEe-eCCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEeecch
Confidence 344444 357999999998775432 333357999887776555
No 179
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=43.81 E-value=18 Score=44.54 Aligned_cols=33 Identities=24% Similarity=0.078 Sum_probs=17.8
Q ss_pred chhhhhhhhhhHHHHhhhHHHHHHHHhhhcCCC
Q 001303 8 RTRILLLSPLLHSAAASVSDAIVSLAAISSRSP 40 (1104)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (1104)
|.-||.++|--.|.+++-++.|.+.+.+.+-+|
T Consensus 194 ~sevl~s~~~~~sSs~~~~~~~sdts~~~~~s~ 226 (811)
T KOG4364|consen 194 RSEVLKSWRSDLSSSAEKLGKISDTSDIRSFSD 226 (811)
T ss_pred HHHHHhhccccchhhHhhhhccCCccccCcccc
Confidence 345666666634444555566666555554443
No 180
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=43.61 E-value=61 Score=37.72 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.++|+++++..+......+++..+++++.+-.--+.++++.+-+++|..++.+...++...++|++
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999998888899999999999999999999999998888764
No 181
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=43.18 E-value=15 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 182 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 182 y~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
-|||.|||||.++.+.+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 36999999998866432 555555 367766665
No 182
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=42.30 E-value=83 Score=37.25 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc--------------cCC---------HHHHHHHHHHHHHHHHHHHHHH
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQE--------------KVP---------SRIQEDNAAKLAKLLQEIDFFE 1094 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~--------------kaP---------~~v~e~~~~Kl~~~~~el~~i~ 1094 (1104)
..+++.|++++..|++++..|+++|....=.. -+| ++-+.+++++++..+-+.+.++
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~ 103 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLE 103 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHh
Confidence 46788999999999999999999987542211 124 4556667888888888888887
Q ss_pred HHHH
Q 001303 1095 NESN 1098 (1104)
Q Consensus 1095 ~~l~ 1098 (1104)
++.+
T Consensus 104 da~~ 107 (514)
T PF11336_consen 104 DAAE 107 (514)
T ss_pred hHHh
Confidence 7654
No 183
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.16 E-value=26 Score=39.29 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHh
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALTT 195 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~~ 195 (1104)
..+++|++.++----+|.+|+||..-+
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPF 107 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPF 107 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhH
Confidence 356789999988778999999997543
No 184
>PLN02886 aminoacyl-tRNA ligase
Probab=40.94 E-value=38 Score=40.16 Aligned_cols=45 Identities=4% Similarity=-0.125 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHhcCcEE
Q 001303 261 GGTILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIY 306 (1104)
Q Consensus 261 ~~~i~~ql~~lG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~~~GlIy 306 (1104)
...+...+..+|+.-+=...|+-.+ +.+. -..|++..+..-|.+.
T Consensus 103 ~~~~~a~~lA~GlDP~ks~if~QS~v~e~~-eL~wil~~~t~~g~L~ 148 (389)
T PLN02886 103 TRSTAAIYLACGIDPSKASVFVQSHVPAHA-ELMWLLSCSTPIGWLN 148 (389)
T ss_pred HHHHHHHHHHcCcCccceEEEEeCCCchhH-HHHHHHHhhCcHHHHH
Confidence 3445677888887766333333333 4443 3355665554444443
No 185
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=40.41 E-value=2.3e+02 Score=26.34 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQE-----KVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~-----kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
..++.|+.+|+++|.+=+.--..|++-++.+...- ..|+.+.+ .-+.++-++.|+..++..+..|.
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~ke-LL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKE-LLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999888887888888888764432 35555544 45556777777777777766654
No 186
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=40.05 E-value=1.4e+02 Score=26.39 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGNS 1103 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~~ 1103 (1104)
+..++.|++++.+-.+..+..++.+. -|..+-..........+|.+...+++.+...|+.+..+
T Consensus 8 ~~~l~~L~~~l~~E~~~r~Gaenm~~--~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 8 QSRLERLEKELSIELKVKEGAENLLR--LYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888775 34333222456667788888899999999988887654
No 187
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=39.81 E-value=75 Score=39.78 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=28.2
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHHH-HHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 789 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~~-r~f~nK 789 (1104)
.|-++++|=|+...+....+..|+++.+... |+.++.
T Consensus 321 G~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~ 358 (601)
T PTZ00402 321 GLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDP 358 (601)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhh
Confidence 5779999999888888778999999988753 334443
No 188
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=38.88 E-value=64 Score=37.82 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
++++.|+.+++.++.|++.-+++-.+ ...++++-.++|.+.+.+|+.+....+.|.+
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~g-----------d~v~s~~lqe~L~ev~~~Lasl~aqea~ls~ 472 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKG-----------DLVVSEALQERLKEVRKALASLLAQEAALSN 472 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888888888888888877766444 3447788888888888888888887777654
No 189
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=38.62 E-value=50 Score=40.11 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=18.3
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 55 EKKIETAEDLERKKKKEEKAKEKELKKLKALEKA 88 (1104)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1104)
+++...+.+..|++++++++.+++||..+.++||
T Consensus 227 erk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq 260 (591)
T KOG2412|consen 227 ERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ 260 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444455566666666666555555555444
No 190
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=38.41 E-value=1.2e+02 Score=33.68 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=56.9
Q ss_pred CCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Q 001303 181 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 260 (1104)
Q Consensus 181 Py~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~ 260 (1104)
++.+|.+++.+-.. -+ +.+.+..+-.|-+|+...|-...+-... .+. + .-.|+.|++.+..+..++
T Consensus 33 i~~~G~l~~~~~~~-~~-~~~~~~~~~~~~kvl~sigg~~~~~~~~-~~~---------~--~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 33 PDANGTLNANPVRS-EL-NSVVNAAHAHNVKILISLAGGSPPEFTA-ALN---------D--PAKRKALVDKIINYVVSY 98 (253)
T ss_pred ECCCCeEEecCcHH-HH-HHHHHHHHhCCCEEEEEEcCCCCCcchh-hhc---------C--HHHHHHHHHHHHHHHHHh
Confidence 45688888864211 11 2234444557888887665433331111 111 1 112456666555444332
Q ss_pred HHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcE
Q 001303 261 GGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 305 (1104)
Q Consensus 261 ~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlI 305 (1104)
+ -=|+.+||+....+ ...|..+++++-..|.+.|++
T Consensus 99 ~--------~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 99 N--------LDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred C--------CCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 1 12789999876443 467888888888888776754
No 191
>PLN02859 glutamine-tRNA ligase
Probab=38.12 E-value=75 Score=40.96 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=43.7
Q ss_pred eeCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHh
Q 001303 692 IRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 765 (1104)
Q Consensus 692 v~D~~G~KMSKS~GNvIdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~ 765 (1104)
.++.+|.||||+++...-=.-+++| .++.+|+.+ .|-++|+|=|++.
T Consensus 492 rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrr---------------------------G~~PeAi~nFi~~ 544 (788)
T PLN02859 492 RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRR---------------------------GVTPTAINAFCRG 544 (788)
T ss_pred eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHH
Confidence 6789999999999875322223333 345555554 6779999999988
Q ss_pred ccCccccc-ccchHHHH
Q 001303 766 YTAQSDKI-NLDIQRVV 781 (1104)
Q Consensus 766 ~~~~~~di-~f~~~~i~ 781 (1104)
.+....+. .++++.+.
T Consensus 545 lG~s~~~~e~i~~~~Le 561 (788)
T PLN02859 545 IGITRSDNSLIRMDRLE 561 (788)
T ss_pred hCCCCCCCceecHHHHH
Confidence 77655565 68877774
No 192
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=38.02 E-value=68 Score=38.36 Aligned_cols=62 Identities=19% Similarity=0.385 Sum_probs=54.1
Q ss_pred EEEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1029 VYLKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1029 v~l~l~-vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~ 1098 (1104)
+++.|. +|++..+.+|+.+++++..++.+.+..+.- .|. .++.+.++..++.+++..++.++
T Consensus 235 a~~~la~l~~~e~~~~l~~~l~~~~~~~~r~~~~l~~------~~~--~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 235 AELPLAYLDLDEYLKKLNQELAKLAAEIERVQEALKE------SPK--SEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHhHHHHHHHHhcc------Ccc--hhhhhhhHHHHHHHHHhhHHHHh
Confidence 667778 999999999999999999999999998763 333 67888999999999999998877
No 193
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=37.84 E-value=99 Score=38.38 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCceEEEEccceeCCCCccccccCCCc-cCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC
Q 001303 681 VPFTKVYLHPMIRDAHGRKMSKSLGNV-IDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE 753 (1104)
Q Consensus 681 ~PFk~V~~Hg~v~D~~G~KMSKS~GNv-IdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~ 753 (1104)
.|..-.+.| ++.+|.||||+++.- |+-- .+.| .|+.+|+.+ .
T Consensus 255 ~P~~~~F~r---ln~~~~~LSKRkl~~lV~~g-~v~GWDDPRl~Ti~~lrrr---------------------------G 303 (554)
T PRK05347 255 HPRQYEFSR---LNLTYTVMSKRKLKQLVEEK-HVDGWDDPRMPTISGLRRR---------------------------G 303 (554)
T ss_pred CCceEEEEE---ECCCCCccccccchhccccC-cccCccCCcchhHHHHHHC---------------------------C
Confidence 574445555 368999999999652 1110 0111 123344333 5
Q ss_pred CCchHHHHHHHhccCcccccccchHHHHH
Q 001303 754 CGTDALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 754 yGaDalR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
|-++|+|=|++..+....+..++++.+..
T Consensus 304 ~~PeAi~nf~~~lG~s~~~~~i~~~~L~~ 332 (554)
T PRK05347 304 YTPESIREFCERIGVTKQDSVIDMSMLES 332 (554)
T ss_pred CCHHHHHHHHHHhCCCCCCCeecHHHHHH
Confidence 77999999999988777788888887765
No 194
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=36.36 E-value=29 Score=40.39 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
|||.|||||.++.+-. ..+.+.-.|.++.+...=.|
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IADlH 47 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIADYH 47 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEechh
Confidence 5899999997764332 22334445666666554333
No 195
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=35.55 E-value=2.7e+02 Score=26.80 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHH
Q 001303 817 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 896 (1104)
Q Consensus 817 ~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l 896 (1104)
...++-++..+..+...+..++.+.+++.++..++++. ..+ +.|.+..+ .+..++.+....|......+..++..++
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~-~~fy~~v~-V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAF-HSFYNKCR-VLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHH-HHHHccCc-ccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888899999999999999999985 444 44445442 2222223222234444455555566666
Q ss_pred HHHhc
Q 001303 897 RLLHP 901 (1104)
Q Consensus 897 ~LL~P 901 (1104)
++|..
T Consensus 112 ~llgi 116 (122)
T smart00836 112 RLLGI 116 (122)
T ss_pred HHcCC
Confidence 66643
No 196
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.49 E-value=1.1e+02 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1076 QEDNAAKLAKLLQEIDFFENESNR 1099 (1104)
Q Consensus 1076 ~e~~~~Kl~~~~~el~~i~~~l~~ 1099 (1104)
+.+..+++..++.+|+.+++.|..
T Consensus 75 i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666544
No 197
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=35.14 E-value=68 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001303 1079 NAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1079 ~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
-+.||++|+++|+++++..+..
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3578999999999998877653
No 198
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=35.11 E-value=38 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=34.3
Q ss_pred hCCcCcccccccccc-cHHHHHHHHHHhhcCCCCceEEEEccceeCCC-CccccccCC
Q 001303 650 FYPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-GRKMSKSLG 705 (1104)
Q Consensus 650 ~~P~d~~~~G~Dil~-fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~-G~KMSKS~G 705 (1104)
+.-+|....|.||-. |=+|+-..-.+.. +. +-++.|.||-... |.|||+|--
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsSd~ 228 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSSDP 228 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCc--cc--ceeecCCCCccccccCccccCCc
Confidence 346789999999853 4444443322221 11 4678899998766 999999943
No 199
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.45 E-value=1.2e+02 Score=33.73 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~ 1098 (1104)
.++.+|+.+++|+..+++.+++.++++++. | ...+.+..+.++.+++++...+.
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s--~--------~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDS--V--------RRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--------HHhHHhHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999985 2 24455556666667777766543
No 200
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.82 E-value=1.5e+02 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
++..++.+..+++.++..++.+..++. .| -.=+.|+.++++.+.|.++++.|+.++.
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vv--sY-------qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVV--SY-------QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554444 23 2356788888888888899888888764
No 201
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=33.29 E-value=43 Score=38.36 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=20.2
Q ss_pred CCCceEEEEccceeCCCCccccccCCCc
Q 001303 680 EVPFTKVYLHPMIRDAHGRKMSKSLGNV 707 (1104)
Q Consensus 680 ~~PFk~V~~Hg~v~D~~G~KMSKS~GNv 707 (1104)
..| ...-+++++|.+|+||||+.|..
T Consensus 219 ~~P--~y~H~pll~~~~g~kLSKr~~~~ 244 (299)
T PRK05710 219 PTP--RYLHLPLVLNADGQKLSKQNGAP 244 (299)
T ss_pred CCC--eEEEeecccCCCCCcccccCCcc
Confidence 445 45555899999999999998754
No 202
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=32.81 E-value=67 Score=39.16 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEccceeCCCCccccccCCCccCcc
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNVIDPL 711 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNvIdP~ 711 (1104)
..+-++++++.+|+|||||.| .++..
T Consensus 236 ~~~H~~li~~~~g~kLSKr~~-~~~~~ 261 (472)
T COG0008 236 VYAHLPLLLNEDGKKLSKRKG-AVSIG 261 (472)
T ss_pred cEEEeeeeecCCCCeecCccC-ccccc
Confidence 566679999999999999999 44433
No 203
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.44 E-value=1.5e+02 Score=27.23 Aligned_cols=57 Identities=12% Similarity=0.249 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-|++.+...|+.|+.++...+..+.. +++. ++.-.++++++++++....+.|+.|++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg-------i~~s----~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG-------IDRS----VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------ccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999899888888877665 2333 345667788899999999998888875
No 204
>PLN02627 glutamyl-tRNA synthetase
Probab=32.38 E-value=1e+02 Score=38.22 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.4
Q ss_pred CCCceEEEEccceeCCCCccccccCCC
Q 001303 680 EVPFTKVYLHPMIRDAHGRKMSKSLGN 706 (1104)
Q Consensus 680 ~~PFk~V~~Hg~v~D~~G~KMSKS~GN 706 (1104)
..| ...-+++|++.+|+||||..|.
T Consensus 276 ~~P--~f~Hlpli~~~~g~KLSKR~~~ 300 (535)
T PLN02627 276 PMP--RFAHVSLILAPDRSKLSKRHGA 300 (535)
T ss_pred CCC--eEEEccceeCCCCCccccccCC
Confidence 445 5666799999999999999865
No 205
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.36 E-value=1.7e+02 Score=32.33 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVP----SRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP----~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-++.||++|+|.|..--+.|-.-.++|+| -||. .++-...+++.++++.+.+.+-.+++.|++
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisn----LKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISN----LKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhc----cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788888888887766666666666664 2333 234456677788899999888888998885
No 206
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.24 E-value=1.6e+02 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
+-+-|..||+++|+.|+.++.+.++...+
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888888888876
No 207
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=31.90 E-value=42 Score=39.85 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=23.5
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
+++.+..|. =|||.|||||..-. .--+..++ -.|++|.+..|
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~g~i~--~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQGILK--AINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCCEEEEEE-CCCCcccccchHhH--hHHHHHHH-hCCCeEEEEEc
Confidence 344444442 45999999993211 11222233 33888887766
No 208
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=31.59 E-value=56 Score=40.54 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=49.8
Q ss_pred eCCCCccccccCCCccCccccccc------cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhc
Q 001303 693 RDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSY 766 (1104)
Q Consensus 693 ~D~~G~KMSKS~GNvIdP~dii~g------~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~ 766 (1104)
++.+|.||||+++...-=.-+++| .++.+|+.+ .|-++|+|=|++..
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrr---------------------------G~~peAi~~f~~~~ 332 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRR---------------------------GYTPAAINRFCELV 332 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHHh
Confidence 568999999999874322222333 234455444 67899999999988
Q ss_pred cCcccccccchHHHHHH-HHHHHHHH
Q 001303 767 TAQSDKINLDIQRVVGY-RQWCNKLW 791 (1104)
Q Consensus 767 ~~~~~di~f~~~~i~~~-r~f~nKl~ 791 (1104)
+....|..++++.+.+. |..++...
T Consensus 333 G~sk~~~~i~~~~Le~~nR~~ld~~a 358 (574)
T PTZ00437 333 GITRSMNVIQISMLENTLREDLDERC 358 (574)
T ss_pred CCCccceEeeHHHHHHHHHHHhcccC
Confidence 88778889999988763 44555543
No 209
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=5.9e+02 Score=26.11 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.|.+.-++.|.|+++++.+.+++++..|.
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~ 118 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALA 118 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788999999999998888887665
No 210
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=31.02 E-value=2e+02 Score=29.67 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC-CH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKV-PS----------------RIQEDNAAKLAKLLQEIDFFENESNR 1099 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~ka-P~----------------~v~e~~~~Kl~~~~~el~~i~~~l~~ 1099 (1104)
.++++.||+.+.+.++...+-.+.+|++..-.... .. .+-.++..+|..++++.++++-.+++
T Consensus 73 ~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKerL~y~ver 152 (153)
T PF08287_consen 73 AEKHLEKLQRREETLKAKCELQQGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKERLKYSVER 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888778888875443322 11 23456677888888888888888776
Q ss_pred h
Q 001303 1100 L 1100 (1104)
Q Consensus 1100 l 1100 (1104)
|
T Consensus 153 L 153 (153)
T PF08287_consen 153 L 153 (153)
T ss_pred C
Confidence 5
No 211
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=30.99 E-value=33 Score=42.33 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=5.8
Q ss_pred ccceeCCCC
Q 001303 689 HPMIRDAHG 697 (1104)
Q Consensus 689 Hg~v~D~~G 697 (1104)
||++-|.+|
T Consensus 562 hgyLSedEg 570 (811)
T KOG4364|consen 562 HGYLSEDEG 570 (811)
T ss_pred Ccccccccc
Confidence 777765555
No 212
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.68 E-value=40 Score=39.45 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCcCcccccccccccHHHHHHHHHHhh----cCCCCceEEEEccceeCCCCccccccCCCccCccccc
Q 001303 651 YPTSVLETGHDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 714 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~arm~~~~~~l----~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii 714 (1104)
|-..+.+.|.||.-.- +.|..+ .+..-+--=++-.++.+..|.|+-||-||.||.+--+
T Consensus 226 ~g~~~QlGGsDQwGNi-----taG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~~ 288 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNI-----TAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPSK 288 (467)
T ss_pred cCeeEEeccccccccc-----chHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecCcc
Confidence 4677889999986431 122221 1110112235667888999999999999999976544
No 213
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=30.02 E-value=1.5e+02 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1051 TQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENE 1096 (1104)
Q Consensus 1051 l~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~ 1096 (1104)
+.++|-.++.-|+.+ ..|++|+...+..|+.++.+++.-+..
T Consensus 2 lK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~~ 43 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAERK 43 (114)
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888765 889999999999999999998875543
No 214
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=30.00 E-value=37 Score=40.73 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001303 66 RKKKKEEKAKEKELKKLKAL 85 (1104)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ 85 (1104)
++.++++|+++|+.+.++.+
T Consensus 337 ~~~~~~~k~~~k~~~~~~~~ 356 (429)
T PRK00247 337 TAEKNEAKARKKEIAQKRRA 356 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 215
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=29.96 E-value=1.7e+02 Score=37.27 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1041 REKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1041 ~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
+++|++++++++++++.++..|++|.+.+. ++....+-.+++++++++++.+.+.-..|
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 628 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQ-PHEQTQKVLADLADAEQELEVAFERWEEL 628 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999865332 33234445556666666666666554433
No 216
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=29.42 E-value=55 Score=35.10 Aligned_cols=56 Identities=13% Similarity=-0.063 Sum_probs=31.2
Q ss_pred cceecCCCCccccCC-CCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeee
Q 001303 447 FINIFTDDGKINSNG-GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEP 509 (1104)
Q Consensus 447 ~~~iid~~G~~~~~~-g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~ 509 (1104)
..-+||.+|++.... ++.-.|.+.. .+++.|+.. ...+.+...-|..|+-|+.++.
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~gr~~~----ell~~l~~l---q~~~~~~~~~p~~w~~g~~~~~ 175 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATTGRNFD----EILRVVDAL---QLTDKHKVATPANWKPGDDVIV 175 (203)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCHH----HHHHHHHHH---hhHhhcCcCcCCCCCCCCceec
Confidence 356899999875321 2122344433 344444432 2233455667999998876543
No 217
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=29.23 E-value=35 Score=40.49 Aligned_cols=29 Identities=28% Similarity=0.659 Sum_probs=19.2
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHH-CCCeeeEec
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRM-SGYNALWVP 216 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm-~G~~Vl~~~ 216 (1104)
|||.+||||.++.+ + .|..| .|+++.+..
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I 40 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV 40 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe
Confidence 69999999988832 2 44443 577765443
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.90 E-value=1.1e+02 Score=37.85 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEK---VPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~k---aP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
++.+++.+++++.+|+.+++++...+..+--.++ +-++-++.-+.+|.+-..+.+.++..++.+++
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666655553222111 22333444455566666666666666666553
No 219
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.85 E-value=2.6e+02 Score=24.75 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
++.-+..|+-+++..+..++.|.. ++-+-..++..++.++..+.+.+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND--------------VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777765 555667777888888888888777765
No 220
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.58 E-value=2.8e+02 Score=28.17 Aligned_cols=60 Identities=15% Similarity=0.334 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1097 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l 1097 (1104)
.++++.+.+++++...+++++.+.+++... ....+++..+.....+.....++....+.+
T Consensus 40 ~l~~~~~~~~~~l~~~~~el~~~~~~l~~~--~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 40 KLQEKFKALQKELQAKQKELQKLQQKLQSQ--KATLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888888754 446677777666667766666666655443
No 221
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.38 E-value=1.5e+02 Score=35.90 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1077 EDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1077 e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
+..++|++++++|++.|+++++.+.
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457888889999999888876543
No 222
>PRK11637 AmiB activator; Provisional
Probab=27.97 E-value=98 Score=37.29 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001303 1081 AKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1081 ~Kl~~~~~el~~i~~~l~ 1098 (1104)
++++.++.++..+++.|+
T Consensus 96 ~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 96 NTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344433333333
No 223
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.92 E-value=44 Score=38.43 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=28.5
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCC-eeeEeccCCCcCCh
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGY-NALWVPGMDHAGIA 224 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~-~Vl~~~G~D~~Glp 224 (1104)
++.|++|. -|||.|||||.++.+ -.+|+...++ ++. .+=.|-|.+-
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga~----~~~v~~q~~~~~~f-~~IaDlha~t 51 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGAI----RNWVLLQEEYYECF-FFIADLHAIT 51 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHHH----HHHHHHhcccCceE-EEEecHHHhh
Confidence 45555553 469999999988763 3455666664 544 4445655543
No 224
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=27.28 E-value=46 Score=27.50 Aligned_cols=35 Identities=26% Similarity=0.583 Sum_probs=28.8
Q ss_pred HHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHH
Q 001303 1055 REKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEID 1091 (1104)
Q Consensus 1055 i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~ 1091 (1104)
++...++++||.|..|.| ++|.-=+|+.+|.+||+
T Consensus 19 ~~~rtkmianpaf~qkip--lietgcekm~dyieelk 53 (62)
T PF10653_consen 19 INDRTKMIANPAFQQKIP--LIETGCEKMTDYIEELK 53 (62)
T ss_pred ecchHHHhcCHHHHhccc--hhhhhhHHHHHHHHHHh
Confidence 345667899999999999 57777889999988875
No 225
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.10 E-value=1.7e+02 Score=32.82 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-+.++..+++....++++|+.|..++..- ..-++..+++..+.+++++.++..|+.+++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~-------~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEI-------QSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444321 112344566667777777777777766654
No 226
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.79 E-value=2.4e+02 Score=30.46 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
-++..|..+|..-|.+++.+++.|++.|.+ | +.++..|..+.+.+..+++.+..|
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~--y---------~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKN--Y---------EKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999988883 4 334444444444444444444443
No 227
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=26.77 E-value=59 Score=36.75 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.1
Q ss_pred CCCceEEEEccceeCCCCccccccCCCc
Q 001303 680 EVPFTKVYLHPMIRDAHGRKMSKSLGNV 707 (1104)
Q Consensus 680 ~~PFk~V~~Hg~v~D~~G~KMSKS~GNv 707 (1104)
..| ...-|+++++.+|+|+||+.|-.
T Consensus 212 ~~P--~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 212 PPP--RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred CCC--eEEechhhhCCCCCeeeccCCcc
Confidence 445 45555899999999999998753
No 228
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=26.56 E-value=2e+02 Score=25.26 Aligned_cols=59 Identities=17% Similarity=0.368 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1041 REKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1041 ~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
++.|.+++++=.+-++..++.+. -| .+-++.+......++.+...+|..++..|+.+..
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~--~~-~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQ--AY-STDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HH-CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HH-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777766666777776666 12 2222237888999999999999999999988875
No 229
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.34 E-value=1.5e+02 Score=30.14 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1076 QEDNAAKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1076 ~e~~~~Kl~~~~~el~~i~~~l~ 1098 (1104)
......++....+|+.++...+.
T Consensus 103 ~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 103 LKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544443
No 230
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.72 E-value=1.4e+02 Score=35.97 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
+.++++..++..+++.++++...+.+.+..
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888888888877763
No 231
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.47 E-value=1.8e+02 Score=35.13 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
+.++.+..++..+++.++.+...+.+.+..
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888888888887777754
No 232
>PRK11637 AmiB activator; Provisional
Probab=25.03 E-value=1.2e+02 Score=36.56 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001303 1082 KLAKLLQEIDFFENE 1096 (1104)
Q Consensus 1082 Kl~~~~~el~~i~~~ 1096 (1104)
+++.++.++..+++.
T Consensus 104 ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 104 QIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 233
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.00 E-value=1.8e+02 Score=35.29 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=22.9
Q ss_pred EEEEEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1027 LKVYLKVE-VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1027 ~~v~l~l~-vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
..+.+-+. -++.+++.+|.+++.+++.+++++++.+.
T Consensus 321 T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~ 358 (451)
T PF03961_consen 321 TEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLK 358 (451)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 44556667777777777777777766654
No 234
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=24.97 E-value=4.7e+02 Score=24.17 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDF 1092 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~ 1092 (1104)
+.++++.|+++..++.++++.+...+ ..-|..+++...++|-+|.+=...
T Consensus 5 l~~~~~~L~~~~~~l~~~i~~~~~~l------~~~~~~~v~~hI~lLheYNeiKD~ 54 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKEISELEAEL------IEDPEKIVKRHIKLLHEYNEIKDI 54 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------ccCHHHHHHHHHHHHHHHhHHHHH
Confidence 34666777777777777777777766 457889999999999888654333
No 235
>PRK00736 hypothetical protein; Provisional
Probab=24.86 E-value=4.9e+02 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
+.+.-+..|+-++...+.-++.|.. ++-+-.+.+..++.++..+.+.++.++
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~--------------~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSD--------------QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677788888888777777765 444455566666777777777666654
No 236
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.77 E-value=5e+02 Score=23.25 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.++-+..|+-++...+.-++.|.+ ++-+-...+..++.++..+.+.+..++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNV--------------TVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455667777777777777777765 4555566667777777777777776654
No 237
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.64 E-value=1.4e+02 Score=32.35 Aligned_cols=23 Identities=0% Similarity=0.174 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1039 AEREKIRTKLTETQKQREKLEKI 1061 (1104)
Q Consensus 1039 ~E~~kL~kkl~kl~k~i~~l~~k 1061 (1104)
..+.+|++++++++.+++.+...
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555555443
No 238
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=24.51 E-value=1.5e+02 Score=28.91 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
-|++.|++||.+-++++..+++.+..++.
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998854
No 239
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=24.30 E-value=1.7e+02 Score=35.31 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-|.++--+|+..++.+++..+.+.+.+++.=+-.-|--...+..+.+....++.+++.++.+|..++.
T Consensus 38 ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 38 EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKD 105 (604)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56667777888888888888888888888544433444556677777777777888888877766543
No 240
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.29 E-value=3.1e+02 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 001303 1039 AEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQ----------EDNAAKLAKLLQEIDFFENESN 1098 (1104)
Q Consensus 1039 ~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~----------e~~~~Kl~~~~~el~~i~~~l~ 1098 (1104)
+-..+|=|+++||+.+..-|++|++.|--..-.|.+|- +.+..-...+++|++++...+.
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999999988766555666554 2233333444555555554443
No 241
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.05 E-value=7.3e+02 Score=24.76 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.+++.-+.-|.++++.+.+.++.+++.+.
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQ 118 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888887665
No 242
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=24.03 E-value=1.9e+02 Score=31.58 Aligned_cols=9 Identities=0% Similarity=0.361 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 001303 195 TAIQDTIIR 203 (1104)
Q Consensus 195 ~~i~D~~~R 203 (1104)
-+|..|+.|
T Consensus 191 EilEEIVSk 199 (225)
T PF10500_consen 191 EILEEIVSK 199 (225)
T ss_pred hHHHHHhhH
Confidence 344444443
No 243
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.00 E-value=1.5e+02 Score=33.37 Aligned_cols=59 Identities=7% Similarity=0.104 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccc----------cCCHHHHHHHHHHHHHHHHHHHHH
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQE----------KVPSRIQEDNAAKLAKLLQEIDFF 1093 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~----------kaP~~v~e~~~~Kl~~~~~el~~i 1093 (1104)
.++..+++.|+++++.-+.+++++.....+..-.. -.-++.+++|++...+|+.++..+
T Consensus 190 ~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 190 NQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888877777776555543311 134455566666666666665543
No 244
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.66 E-value=1.7e+02 Score=27.93 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc-CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEK-VPSRIQ---EDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~k-aP~~v~---e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
++++.+...+..+++.++.+...+.+.+.... ..+ -.++++ ..-++++.++++++..+++.+..+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~-~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLK-KAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888888877766321 111 112222 223455556666666666655443
No 245
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.42 E-value=2.6e+02 Score=34.64 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=14.0
Q ss_pred hhhhhHHHHhhhHHHHHHHHh
Q 001303 14 LSPLLHSAAASVSDAIVSLAA 34 (1104)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (1104)
-.|...-||...+..-+.+..
T Consensus 370 ~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 370 SHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHhc
Confidence 457777777777766666554
No 246
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.18 E-value=6.9e+02 Score=24.17 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=24.2
Q ss_pred CEEEEEecc------ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1026 NLKVYLKVE------VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1026 ~~~v~l~l~------vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.-.|++.+. .+.+.-+.-+.++++.++++++.+++.+.
T Consensus 68 ~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~ 111 (129)
T cd00890 68 DDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLE 111 (129)
T ss_pred CCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444 35555567777777777777777776544
No 247
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=23.11 E-value=82 Score=35.40 Aligned_cols=24 Identities=8% Similarity=0.067 Sum_probs=16.5
Q ss_pred hcCcEEEccEeeeecCCCCccccc
Q 001303 301 KEGLIYRDLRLVNWDCVLRTAISD 324 (1104)
Q Consensus 301 ~~GlIyr~~~~v~wcp~~~TaLsd 324 (1104)
+.+.+.--..+..|||.|.+-+..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~ 120 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLG 120 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHH
Confidence 333555556777899999886554
No 248
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.09 E-value=2.8e+02 Score=29.63 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1039 AEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1039 ~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
.++..+-.++..++++++.+++.+. .| ....++.++..++....+.+.+.+....|-.|+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~--~~-~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE--KY-SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5666777777788888888888887 56 445667888888888888888888877766554
No 249
>PLN02678 seryl-tRNA synthetase
Probab=22.91 E-value=1.7e+02 Score=35.66 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
+.++.+..++..+++.++.+...+.+.+.
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777888888888888888877775
No 250
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=22.67 E-value=39 Score=35.10 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=9.8
Q ss_pred CCCeeeeccccccccccc
Q 001303 503 SNDVVEPMIKPQWYVNCN 520 (1104)
Q Consensus 503 s~~~ie~~~~~QWFl~~~ 520 (1104)
.|..++++++||||.+-.
T Consensus 23 k~KK~V~iiSPQWF~k~G 40 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG 40 (163)
T ss_dssp TT-EEEEE--GGG--TT-
T ss_pred cCCcEEEEECCcccCCCC
Confidence 477889999999999743
No 251
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.92 E-value=2.5e+02 Score=34.09 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
-++.+++..+.+++.++++.+.++++.-..... ..--.+..+.-++.+.++.++++.+++.+..|
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKL-PPEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999888874332111 11111223333344444444555544444443
No 252
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.86 E-value=3.1e+02 Score=25.60 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEK 1060 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~ 1060 (1104)
|.+.-+..|+++++.++.+++++++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 253
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.73 E-value=5.1e+02 Score=24.94 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVP-SRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP-~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
..+++.+..++.....++++++.++.+ .| .+-+.+-+-.+++++.+++.+++.+..+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~------LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEH------LPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466778888888888888888888764 23 2334555555666666666666665544
No 254
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=21.73 E-value=85 Score=36.25 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEccceeCCCCccccccCCCcc
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNVI 708 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNvI 708 (1104)
...-|++++|.+|+|+||+.|..-
T Consensus 229 ~~~H~pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 229 PYAHLPLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp EEEEEEEEEETTSSBSSTTCSHHB
T ss_pred ceEeeeeeecCCCcEechhhcccc
Confidence 445558899999999999988653
No 255
>PLN02320 seryl-tRNA synthetase
Probab=21.59 E-value=2.1e+02 Score=35.29 Aligned_cols=30 Identities=3% Similarity=0.216 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
+.++.+...+..+++.++.+...+.+.+..
T Consensus 96 ~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 96 LELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888864
No 256
>PRK04406 hypothetical protein; Provisional
Probab=21.46 E-value=6.1e+02 Score=22.94 Aligned_cols=51 Identities=10% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
++.-+..|+-++...+.-|+.|.. ++-+-.+.+..++.++..+.+.+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~--------------~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELND--------------ALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666666666666654 444555666777777777777776655
No 257
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=21.26 E-value=6.1e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcc--ccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhc
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQ--EKVPSRIQEDNAAK----LAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~--~kaP~~v~e~~~~K----l~~~~~el~~i~~~l~~l~~ 1102 (1104)
..-..+|..++..+.+++......+.+.... +-+.....+.++.. +.....+|..|+.+|.++.+
T Consensus 7 ~~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~~ 77 (110)
T TIGR02420 7 EHFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIED 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445677777777788887777777654221 22222222222221 22345668888999988875
No 258
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.23 E-value=3.4e+02 Score=31.45 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 001303 1042 EKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1042 ~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.++..+.+.++.++..+++...
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433
No 259
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=21.18 E-value=1.7e+02 Score=35.49 Aligned_cols=75 Identities=35% Similarity=0.306 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHhhhHHHHHHH-H---------hhhcCCCccccCc-CC---------CCC--------CccccccCchh
Q 001303 11 ILLLSPLLHSAAASVSDAIVSL-A---------AISSRSPYASSSS-LS---------SIM--------TEPEKKIETAE 62 (1104)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~-~~---------~~~--------~~~~~~~~~~~ 62 (1104)
-+|-|-.||-||++-.--.|-. - .--.|.||..+-. .. .++ ..+++....+.
T Consensus 427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~~~l~es~~nW~~t~i~~PltrEq~ 506 (591)
T KOG2505|consen 427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIARRVLNESFGNWARTHIPEPLTREQE 506 (591)
T ss_pred ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHHHHHhcccccchhhhcCCCcccHHHH
Confidence 3567888998887643333221 1 1124677766542 10 111 22333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001303 63 DLERKKKKEEKAKEKELKKLKAL 85 (1104)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~ 85 (1104)
+..++++|+.++++|++|+.|.+
T Consensus 507 ~eq~ekkkek~anqka~kk~kke 529 (591)
T KOG2505|consen 507 REQAEKKKEKKANQKAKKKLKKE 529 (591)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 45566666667777766665543
No 260
>PLN02907 glutamate-tRNA ligase
Probab=21.13 E-value=2.4e+02 Score=36.42 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCCchHHHHHHHhccCcccccccchHHHHHH-HHHHHH
Q 001303 753 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 789 (1104)
Q Consensus 753 ~yGaDalR~~L~~~~~~~~di~f~~~~i~~~-r~f~nK 789 (1104)
.|-++++|=|+...+....+..|+++.+... |+.++.
T Consensus 481 G~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~ 518 (722)
T PLN02907 481 GLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDP 518 (722)
T ss_pred CCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhcc
Confidence 5779999999888877777889998887653 334433
No 261
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=21.10 E-value=4.1e+02 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHHHHHHh---ccccccCCccccC---ChhhHHHHHHHHHHHHhcCcE
Q 001303 263 TILRQQRRL---GASLDWSRECFTM---DEKRSKAVTEAFVRLYKEGLI 305 (1104)
Q Consensus 263 ~i~~ql~~l---G~s~DW~r~~~T~---d~~~~~~v~~~F~~L~~~GlI 305 (1104)
.+.+.+++. |+.+||+.....- -..|..++.++-.+|..+|++
T Consensus 95 ~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ 143 (210)
T cd00598 95 SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYL 143 (210)
T ss_pred HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcE
Confidence 334444444 8899998765543 267777777777777766554
No 262
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.91 E-value=3.2e+02 Score=30.35 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
-|++.++.+++..+.++..++++.+.+|++
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~ 84 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKLSA 84 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777778888888888888888888754
No 263
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.71 E-value=4e+02 Score=24.10 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINA--PGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n--~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
+.+..+.+|.|+-=-+.=+|--++.+|.. |.+..-+..+-++ -+..+.+++.|+...+..|..+++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIE-LKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888889999998882 3333333333333 234455677777777777666543
No 264
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.47 E-value=1.9e+02 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.....+++.|++++++++++.+.++..+.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888887765
No 265
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.41 E-value=2.1e+02 Score=35.03 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+..|+..|+.|..+++.+|+++..|+.. =+..+..++..|..++.+++..+.+++++.+
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEe-------lk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEE-------LKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34567778888888888888888876652 1224455666677777777777777776654
No 266
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=20.07 E-value=51 Score=38.42 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.0
Q ss_pred CCCCCCcchhHHhHH
Q 001303 183 VTGALHIGHALTTAI 197 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i 197 (1104)
|||.+||||.++.+.
T Consensus 11 PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 11 PTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCcchHHHHHHHHH
Confidence 589999999887543
No 267
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=20.01 E-value=80 Score=38.46 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHhcCcEEEccEee
Q 001303 286 EKRSKAVTEAFVRLYKEGLIYRDLRLV 312 (1104)
Q Consensus 286 ~~~~~~v~~~F~~L~~~GlIyr~~~~v 312 (1104)
..|...|.++|.-||.+|.|||+.+|=
T Consensus 523 rF~~acv~EAfeYLH~k~iIYRDLKPE 549 (732)
T KOG0614|consen 523 RFYVACVLEAFEYLHRKGIIYRDLKPE 549 (732)
T ss_pred hhhHHHHHHHHHHHHhcCceeccCChh
Confidence 467888999999999999999999774
Done!