Query 001303
Match_columns 1104
No_of_seqs 414 out of 3211
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 9E-194 3E-198 1808.2 76.7 855 140-1101 3-862 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-164 4E-169 1556.6 49.4 791 122-1008 6-862 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 5E-160 2E-164 1510.2 48.0 743 142-964 6-819 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 3E-143 1E-147 1373.7 51.8 740 142-985 2-871 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 8E-135 3E-139 1268.6 52.0 648 138-936 19-812 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-132 3E-137 1259.9 51.4 668 143-959 3-829 (878)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 3E-128 9E-133 1222.4 53.4 683 142-915 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 1.3E-92 4.5E-97 861.0 31.2 473 169-917 6-500 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 3.7E-91 1.3E-95 867.9 33.5 492 172-916 2-521 (722)
10 3h99_A Methionyl-tRNA syntheta 100.0 2.1E-87 7E-92 817.0 26.8 489 169-916 15-521 (560)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 3.3E-85 1.1E-89 793.7 33.0 465 170-917 23-499 (536)
12 2x1l_A Methionyl-tRNA syntheta 100.0 2.7E-85 9.4E-90 793.3 32.2 469 169-917 9-492 (524)
13 3kfl_A Methionyl-tRNA syntheta 100.0 4.5E-85 1.5E-89 795.2 29.7 479 160-916 14-515 (564)
14 2d5b_A Methionyl-tRNA syntheta 100.0 9.9E-84 3.4E-88 775.7 26.9 457 171-916 2-469 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 2.3E-81 7.7E-86 754.4 25.2 456 170-916 3-468 (497)
16 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.9E-42 6.5E-47 405.6 19.5 346 173-864 25-373 (462)
17 3c8z_A Cysteinyl-tRNA syntheta 100.0 3.4E-40 1.2E-44 386.6 25.3 139 652-854 244-385 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 100.0 9.8E-41 3.3E-45 392.6 20.0 350 172-854 43-412 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.4E-38 4.8E-43 376.7 20.6 348 170-865 21-372 (461)
20 1wka_A Valyl-tRNA synthetase; 100.0 1.3E-36 4.6E-41 305.3 16.3 139 350-493 4-146 (147)
21 1wny_A Isoleucyl-tRNA syntheta 100.0 3.3E-33 1.1E-37 292.0 14.0 140 353-496 6-186 (186)
22 2ajg_A Leucyl-tRNA synthetase; 100.0 1.4E-30 4.8E-35 274.4 14.2 139 350-490 10-195 (196)
23 3o0a_A Leucyl-tRNA synthetase 100.0 4.1E-30 1.4E-34 274.3 12.6 128 364-493 38-217 (219)
24 3fnr_A Arginyl-tRNA synthetase 100.0 3E-26 1E-30 270.1 35.7 200 655-904 239-451 (464)
25 2wfg_A Cytosolic leucyl-tRNA s 99.9 3.8E-28 1.3E-32 265.9 11.3 136 361-498 30-257 (261)
26 2wfd_A Leucyl-tRNA synthetase, 99.9 7.4E-27 2.5E-31 254.9 14.7 126 361-490 27-250 (252)
27 1iq0_A Arginyl-tRNA synthetase 99.9 2.9E-25 9.8E-30 270.9 25.9 195 685-901 381-586 (592)
28 3pz6_A Leurs, leucyl-tRNA synt 99.9 4.5E-26 1.6E-30 248.3 11.1 157 316-492 48-306 (311)
29 2zue_A Arginyl-tRNA synthetase 99.9 6.3E-24 2.1E-28 259.9 27.9 192 685-901 411-623 (629)
30 1irx_A Lysyl-tRNA synthetase; 99.9 6.2E-24 2.1E-28 256.0 5.9 124 174-307 21-152 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.7 4.8E-16 1.6E-20 189.1 31.2 133 170-309 141-319 (607)
32 3aii_A Glutamyl-tRNA synthetas 98.8 8.1E-09 2.8E-13 122.7 9.7 94 175-307 97-190 (553)
33 2cfo_A Glutamyl-tRNA synthetas 98.6 2.4E-07 8.1E-12 110.0 13.1 89 180-307 7-96 (492)
34 1nzj_A Hypothetical protein YA 97.9 9.4E-06 3.2E-10 90.4 5.7 91 179-308 10-101 (298)
35 2o5r_A Glutamyl-tRNA synthetas 97.8 2.9E-05 9.9E-10 92.0 8.5 97 173-308 12-117 (481)
36 3al0_C Glutamyl-tRNA(Gln) amid 97.7 8.5E-05 2.9E-09 90.0 9.7 97 173-309 129-234 (592)
37 1qtq_A GLNRS, protein (glutami 97.6 9.3E-05 3.2E-09 88.1 9.0 95 175-307 27-121 (553)
38 4g6z_A Glutamate-tRNA ligase; 97.6 8.1E-05 2.8E-09 87.8 7.7 94 177-309 28-122 (490)
39 2hz7_A Glutaminyl-tRNA synthet 97.4 0.00024 8E-09 88.3 8.7 95 175-307 67-161 (851)
40 4gri_A Glutamate--tRNA ligase; 97.2 0.00062 2.1E-08 81.4 9.5 95 180-309 30-129 (512)
41 2cyb_A Tyrosyl-tRNA synthetase 97.2 0.00049 1.7E-08 77.6 7.8 59 650-712 168-227 (323)
42 1j09_A Glutamyl-tRNA synthetas 97.2 0.00049 1.7E-08 81.1 8.1 91 180-309 7-106 (468)
43 3afh_A Glutamyl-tRNA synthetas 97.1 0.00067 2.3E-08 80.4 8.5 95 176-309 27-130 (488)
44 2ja2_A Glutamyl-tRNA synthetas 97.1 0.00068 2.3E-08 80.4 8.3 92 179-309 11-111 (498)
45 3tzl_A Tryptophanyl-tRNA synth 95.0 0.014 4.8E-07 65.6 4.4 61 651-712 138-205 (322)
46 2g36_A Tryptophanyl-tRNA synth 94.7 0.021 7.1E-07 64.7 4.7 71 651-727 152-228 (340)
47 2yxn_A Tyrosyl-tRNA synthetase 94.7 0.012 4E-07 66.3 2.6 58 651-712 190-248 (322)
48 1jil_A Tyrrs, tyrosyl-tRNA syn 94.7 0.017 5.8E-07 67.2 4.0 59 651-713 185-245 (420)
49 2ts1_A Tyrosyl-tRNA synthetase 94.6 0.015 5.1E-07 67.5 3.4 59 651-713 184-244 (419)
50 2zp1_A Tyrosyl-tRNA synthetase 94.6 0.038 1.3E-06 61.8 6.5 66 651-728 162-228 (314)
51 2pid_A Tyrosyl-tRNA synthetase 94.6 0.014 4.8E-07 66.4 3.0 59 651-713 209-268 (356)
52 2jan_A Tyrosyl-tRNA synthetase 94.4 0.023 8E-07 66.1 4.3 59 651-713 186-246 (432)
53 1h3f_A Tyrosyl-tRNA synthetase 94.2 0.031 1.1E-06 65.1 4.9 58 651-712 186-245 (432)
54 1y42_X Tyrosyl-tRNA synthetase 94.2 0.02 6.9E-07 66.0 3.3 63 651-713 231-307 (392)
55 2lw1_A ABC transporter ATP-bin 94.1 0.23 7.9E-06 44.9 9.5 69 1035-1104 18-89 (89)
56 1n3l_A Tyrosyl-tRNA synthetase 93.8 0.043 1.5E-06 62.9 4.9 58 651-712 177-236 (372)
57 1yi8_B Tryptophanyl-tRNA synth 93.5 0.049 1.7E-06 61.9 4.6 62 651-713 161-229 (351)
58 2dlc_X Tyrosyl-tRNA synthetase 93.2 0.058 2E-06 62.3 4.7 59 651-713 181-242 (394)
59 2el7_A Tryptophanyl-tRNA synth 93.2 0.058 2E-06 61.0 4.5 60 651-712 140-208 (337)
60 3vgj_A Tyrosyl-tRNA synthetase 92.3 0.1 3.6E-06 59.6 5.1 58 651-712 199-261 (373)
61 4arc_A Leucine--tRNA ligase; l 91.9 0.077 2.6E-06 67.2 3.8 79 472-555 154-246 (880)
62 2ja2_A Glutamyl-tRNA synthetas 91.1 0.51 1.8E-05 55.9 9.4 72 657-768 213-289 (498)
63 2o5r_A Glutamyl-tRNA synthetas 91.1 0.2 6.7E-06 59.3 5.9 58 654-715 220-277 (481)
64 2ip1_A Tryptophanyl-tRNA synth 91.1 0.11 3.7E-06 60.6 3.6 58 651-712 248-309 (432)
65 1qtq_A GLNRS, protein (glutami 91.0 0.081 2.8E-06 63.1 2.4 71 684-782 253-329 (553)
66 2cya_A Tyrosyl-tRNA synthetase 90.9 0.17 5.9E-06 57.7 5.0 59 651-713 176-253 (364)
67 3i05_A Tryptophanyl-tRNA synth 90.8 0.09 3.1E-06 60.5 2.5 56 653-712 225-283 (395)
68 2yy5_A Tryptophanyl-tRNA synth 90.7 0.16 5.5E-06 57.6 4.4 61 651-712 146-218 (348)
69 1i6k_A TRPRS, tryptophanyl-tRN 90.4 0.19 6.5E-06 56.5 4.6 61 651-712 136-208 (328)
70 1j09_A Glutamyl-tRNA synthetas 90.3 0.45 1.6E-05 56.0 7.9 72 657-768 204-275 (468)
71 2j5b_A Tyrosyl-tRNA synthetase 90.2 0.24 8.1E-06 56.2 5.3 58 652-713 186-247 (348)
72 3hzr_A Tryptophanyl-tRNA synth 90.1 0.18 6.1E-06 57.9 4.2 55 654-712 226-283 (386)
73 1r6u_A Tryptophanyl-tRNA synth 89.7 0.18 6.3E-06 58.7 3.9 56 654-713 258-317 (437)
74 3hv0_A Tryptophanyl-tRNA synth 89.7 0.18 6.2E-06 58.0 3.8 54 655-712 223-280 (393)
75 3jxe_A Tryptophanyl-tRNA synth 89.5 0.22 7.4E-06 57.3 4.3 56 653-712 208-267 (392)
76 3tze_A Tryptophanyl-tRNA synth 88.9 0.21 7.3E-06 57.6 3.6 57 652-712 243-303 (406)
77 1r6t_A Tryptophanyl-tRNA synth 88.7 0.24 8.1E-06 58.5 3.9 56 654-713 305-364 (477)
78 3afh_A Glutamyl-tRNA synthetas 88.6 0.67 2.3E-05 54.8 7.7 71 657-767 216-286 (488)
79 2v0c_A Aminoacyl-tRNA syntheta 88.2 0.46 1.6E-05 60.4 6.3 77 472-554 134-225 (878)
80 3p0j_A Tyrosyl-tRNA synthetase 88.0 0.38 1.3E-05 59.2 5.3 58 651-712 182-244 (690)
81 2dlc_X Tyrosyl-tRNA synthetase 86.8 1.3 4.6E-05 50.9 8.6 82 172-280 38-119 (394)
82 1nzj_A Hypothetical protein YA 85.5 0.47 1.6E-05 52.5 3.8 47 658-707 190-236 (298)
83 2hz7_A Glutaminyl-tRNA synthet 85.2 0.72 2.4E-05 57.6 5.5 70 685-782 294-369 (851)
84 2cyc_A Tyrosyl-tRNA synthetase 85.0 0.66 2.3E-05 53.1 4.8 79 174-275 34-113 (375)
85 3al0_C Glutamyl-tRNA(Gln) amid 84.9 0.58 2E-05 56.7 4.5 71 657-767 320-390 (592)
86 3n9i_A Tryptophanyl-tRNA synth 84.5 0.7 2.4E-05 52.2 4.6 62 651-712 151-223 (346)
87 3sz3_A Tryptophanyl-tRNA synth 82.6 0.36 1.2E-05 54.5 1.3 62 651-712 142-217 (341)
88 2cyb_A Tyrosyl-tRNA synthetase 82.0 2 7E-05 48.0 7.2 41 173-218 32-72 (323)
89 3foc_A Tryptophanyl-tRNA synth 81.2 0.55 1.9E-05 54.8 2.1 52 656-711 291-346 (451)
90 1n3l_A Tyrosyl-tRNA synthetase 77.9 4.2 0.00014 46.3 8.1 39 174-217 36-74 (372)
91 3prh_A Tryptophanyl-tRNA synth 77.6 1.6 5.3E-05 50.1 4.3 62 651-712 170-242 (388)
92 4g6z_A Glutamate-tRNA ligase; 76.9 5.3 0.00018 47.1 8.7 70 658-767 226-295 (490)
93 3a04_A Tryptophanyl-tRNA synth 76.5 1.6 5.6E-05 49.7 4.2 59 653-711 209-269 (372)
94 1go4_E MAD1 (mitotic arrest de 76.3 5.1 0.00018 36.7 6.5 69 1035-1103 15-97 (100)
95 2cyc_A Tyrosyl-tRNA synthetase 74.6 2.4 8.1E-05 48.5 4.8 28 686-713 220-266 (375)
96 3viq_B Mating-type switching p 73.1 15 0.00051 32.6 8.4 51 1036-1091 5-55 (85)
97 3a04_A Tryptophanyl-tRNA synth 71.5 1.4 4.7E-05 50.4 1.9 59 157-220 46-112 (372)
98 3tzl_A Tryptophanyl-tRNA synth 71.2 1.3 4.3E-05 49.6 1.5 36 183-223 12-47 (322)
99 2ke4_A CDC42-interacting prote 70.9 13 0.00045 34.0 7.9 62 1040-1102 23-90 (98)
100 1i6k_A TRPRS, tryptophanyl-tRN 65.3 2.5 8.6E-05 47.3 2.3 31 183-217 10-40 (328)
101 3jxe_A Tryptophanyl-tRNA synth 65.2 6.7 0.00023 44.9 5.9 61 156-220 48-116 (392)
102 3hv0_A Tryptophanyl-tRNA synth 63.9 8.8 0.0003 44.0 6.5 59 157-219 50-117 (393)
103 3hzr_A Tryptophanyl-tRNA synth 63.0 13 0.00045 42.4 7.7 59 156-218 57-123 (386)
104 3p0j_A Tyrosyl-tRNA synthetase 61.0 7.6 0.00026 47.8 5.6 45 173-223 40-85 (690)
105 1y42_X Tyrosyl-tRNA synthetase 60.2 6.5 0.00022 45.1 4.6 34 183-220 73-107 (392)
106 2el7_A Tryptophanyl-tRNA synth 59.3 3.5 0.00012 46.4 2.1 33 183-218 10-43 (337)
107 2pid_A Tyrosyl-tRNA synthetase 58.9 5.5 0.00019 45.1 3.6 42 174-220 47-89 (356)
108 3i05_A Tryptophanyl-tRNA synth 58.9 6.6 0.00023 45.0 4.3 61 156-220 53-122 (395)
109 2cya_A Tyrosyl-tRNA synthetase 57.2 6.4 0.00022 44.7 3.8 39 174-217 36-74 (364)
110 2yxn_A Tyrosyl-tRNA synthetase 56.2 6.6 0.00023 43.8 3.6 40 174-218 34-74 (322)
111 2ts1_A Tyrosyl-tRNA synthetase 55.2 8 0.00027 44.7 4.2 34 183-220 39-73 (419)
112 1lrz_A FEMA, factor essential 55.2 23 0.00077 40.9 8.1 63 1030-1100 237-300 (426)
113 2jan_A Tyrosyl-tRNA synthetase 54.6 7.6 0.00026 45.1 3.9 40 174-218 33-73 (432)
114 2g36_A Tryptophanyl-tRNA synth 53.6 7.1 0.00024 43.9 3.4 40 173-217 13-52 (340)
115 2yy5_A Tryptophanyl-tRNA synth 53.0 4.3 0.00015 45.9 1.4 32 183-218 13-44 (348)
116 2ip1_A Tryptophanyl-tRNA synth 52.9 7.8 0.00027 45.0 3.7 58 156-217 77-143 (432)
117 2zp1_A Tyrosyl-tRNA synthetase 52.9 4.3 0.00015 45.2 1.4 33 184-220 38-70 (314)
118 1jil_A Tyrrs, tyrosyl-tRNA syn 52.6 8 0.00027 44.7 3.7 42 174-220 33-75 (420)
119 2j5b_A Tyrosyl-tRNA synthetase 51.6 8.8 0.0003 43.3 3.7 44 173-220 40-83 (348)
120 3vgj_A Tyrosyl-tRNA synthetase 50.1 9.1 0.00031 43.6 3.6 42 175-222 58-100 (373)
121 1h3f_A Tyrosyl-tRNA synthetase 50.0 9.6 0.00033 44.2 3.8 43 173-220 37-80 (432)
122 1r6t_A Tryptophanyl-tRNA synth 48.3 10 0.00035 44.6 3.7 61 156-220 130-199 (477)
123 3tze_A Tryptophanyl-tRNA synth 47.4 17 0.00056 41.9 5.2 60 156-219 76-144 (406)
124 1r6u_A Tryptophanyl-tRNA synth 46.3 9.9 0.00034 44.2 3.1 59 156-218 83-150 (437)
125 1vcs_A Vesicle transport throu 44.2 65 0.0022 29.4 7.7 60 1037-1102 36-95 (102)
126 2l5g_B Putative uncharacterize 43.9 30 0.001 26.4 4.3 25 1037-1061 14-38 (42)
127 3hnw_A Uncharacterized protein 42.2 30 0.001 33.6 5.4 67 1035-1101 64-130 (138)
128 3sz3_A Tryptophanyl-tRNA synth 42.0 5.2 0.00018 45.0 -0.1 31 183-217 15-45 (341)
129 1yi8_B Tryptophanyl-tRNA synth 41.9 8.8 0.0003 43.3 1.7 29 184-217 32-61 (351)
130 3prh_A Tryptophanyl-tRNA synth 41.7 9.1 0.00031 43.8 1.8 41 176-222 38-78 (388)
131 4gqc_A Thiol peroxidase, perox 41.2 24 0.00081 34.8 4.6 27 298-324 28-55 (164)
132 3lof_A Heat shock 70 kDa prote 35.5 1.5E+02 0.0051 27.1 8.9 43 1047-1089 10-52 (113)
133 2qyw_A Vesicle transport throu 34.2 1.3E+02 0.0046 27.3 8.1 54 1038-1097 48-101 (102)
134 3n9i_A Tryptophanyl-tRNA synth 34.2 8 0.00027 43.5 -0.2 31 182-217 23-54 (346)
135 3onj_A T-snare VTI1; helix, HA 33.7 70 0.0024 29.0 6.1 57 1039-1101 34-93 (97)
136 4gri_A Glutamate--tRNA ligase; 33.3 92 0.0031 36.8 8.7 27 679-707 255-281 (512)
137 3u1c_A Tropomyosin alpha-1 cha 33.2 1E+02 0.0035 28.1 7.1 59 1037-1102 42-100 (101)
138 3foc_A Tryptophanyl-tRNA synth 31.4 28 0.00097 40.5 3.7 59 156-218 66-133 (451)
139 2dfs_A Myosin-5A; myosin-V, in 30.0 99 0.0034 40.0 8.8 55 1037-1101 989-1043(1080)
140 2zqm_A Prefoldin beta subunit 28.5 1.4E+02 0.0048 27.4 7.5 29 1035-1063 66-94 (117)
141 1l8d_A DNA double-strand break 28.1 1.7E+02 0.0058 26.7 8.0 61 1038-1101 16-91 (112)
142 2pms_C Pneumococcal surface pr 28.0 1.5E+02 0.005 28.2 7.3 24 1041-1064 8-31 (125)
143 2eqb_B RAB guanine nucleotide 26.9 2.1E+02 0.0071 26.0 7.7 27 1037-1063 10-36 (97)
144 3hnw_A Uncharacterized protein 26.7 75 0.0026 30.8 5.3 26 1075-1100 111-136 (138)
145 2lw1_A ABC transporter ATP-bin 26.2 31 0.0011 30.8 2.3 57 1043-1100 19-75 (89)
146 2p32_A Heat shock 70 kDa prote 25.5 1.9E+02 0.0065 26.8 7.8 54 1048-1101 20-81 (120)
147 4gkw_A Spindle assembly abnorm 24.2 1.3E+02 0.0044 28.5 6.0 57 1037-1097 58-114 (167)
148 2ic6_A Nucleocapsid protein; h 24.1 1.3E+02 0.0046 26.1 5.7 60 1041-1101 7-72 (78)
149 2lf0_A Uncharacterized protein 23.9 1.8E+02 0.0062 27.2 6.8 51 1037-1096 8-58 (123)
150 1ses_A Seryl-tRNA synthetase; 23.5 1.8E+02 0.0063 33.3 8.8 59 1035-1099 31-89 (421)
151 4dac_A Computationally designe 23.1 35 0.0012 22.8 1.4 21 1037-1057 6-26 (28)
152 3efg_A Protein SLYX homolog; x 23.0 2E+02 0.0067 25.0 6.7 54 1035-1102 10-63 (78)
153 1ud0_A HSC70, 70 kDa heat-shoc 22.4 1.3E+02 0.0044 27.5 5.9 41 1048-1088 6-46 (113)
154 3u59_A Tropomyosin beta chain; 22.1 2.1E+02 0.0073 25.8 7.2 58 1038-1102 43-100 (101)
155 1gmj_A ATPase inhibitor; coile 21.8 2.5E+02 0.0084 24.8 7.0 30 1073-1102 50-79 (84)
156 2pms_C Pneumococcal surface pr 21.6 3.6E+02 0.012 25.6 8.6 60 1041-1100 63-122 (125)
157 2k48_A Nucleoprotein; viral pr 20.8 2.6E+02 0.0089 25.6 7.1 61 1039-1100 35-101 (107)
158 2lf0_A Uncharacterized protein 20.8 49 0.0017 30.9 2.5 51 1043-1102 7-57 (123)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=9.1e-194 Score=1808.24 Aligned_cols=855 Identities=41% Similarity=0.728 Sum_probs=787.7
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 140 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 140 ~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
|++.|||..+|++||++|++ ++|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence 67889999999999999999 99999876778999999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||||||.+||+++. ..|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+|+|.+|
T Consensus 82 ~~Glp~e~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 82 HAGIATQVVVERLLL-KEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp CCTHHHHHHHHTTTT-TTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH-HcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 999999999998773 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccC
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 379 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~ 379 (1104)
|++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.++ .+|+|||||||||+||
T Consensus 161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~----------------g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~ 223 (862)
T 1gax_A 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTP----------------GKLYTLRYEVEGG-GFIEIATVRPETVFAD 223 (862)
T ss_dssp HTTSSEEEECCEEEEETTTTEEECGGGEEECCEE----------------EEEEEEECCCSSS-CCCEEEESCSGGGTTC
T ss_pred HHCCCEEecccccccCCCcCcccccccccccccc----------------ceEEEEEEEecCC-CEEEEEeCCccccccc
Confidence 9999999999999999999999999999998865 6788999999876 7999999999999999
Q ss_pred ceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCcccc
Q 001303 380 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 459 (1104)
Q Consensus 380 ~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~ 459 (1104)
+||||||+|+||++|+|+++.||++|+.+|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|++++
T Consensus 224 ~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~ 302 (862)
T 1gax_A 224 QAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302 (862)
T ss_dssp CCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTT-CCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCS
T ss_pred eEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccc-cccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCcccc
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCc
Q 001303 460 NG--GLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 537 (1104)
Q Consensus 460 ~~--g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~ 537 (1104)
+| | +|.||++++||+.|++.|++.|++.+.+++.|++|+|||||++|++++++||||+++.+++++++++ ++++
T Consensus 303 ~~~~g-~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v---~~~~ 378 (862)
T 1gax_A 303 ERVPE-ALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGL---RRGD 378 (862)
T ss_dssp SSSCT-TTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHH---HHTC
T ss_pred ccCCc-ccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHH---HcCC
Confidence 99 8 9999999999999999999999999999999999999999999999999999999999999999999 7789
Q ss_pred eEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCC-cc
Q 001303 538 LELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 616 (1104)
Q Consensus 538 i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~ 616 (1104)
++|+|+++++++.+||++++|||||||||||||||+|||..|+ ...++... +.... ...|+.++ ..
T Consensus 379 ~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~-----------~i~v~~~~-~l~~~-~~~~~~~g~~~ 445 (862)
T 1gax_A 379 IAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQ-----------AVNVPRPE-RYLED-PTSCEACGSPR 445 (862)
T ss_dssp CEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTC-----------CEECCCGG-GTTCC-CCSCTTTCCSC
T ss_pred ceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCC-----------EEEEeccc-ccccc-chhhhhcCchh
Confidence 9999999999999999999999999999999999999997653 12222200 00000 00233222 26
Q ss_pred cccCCCceeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCC
Q 001303 617 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 696 (1104)
Q Consensus 617 l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~ 696 (1104)
++|++||||||||||+||++++|||+++++|++|||+|++++|+||+|||++||+++++.++|+.||++|++||+|+|.+
T Consensus 446 ~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~ 525 (862)
T 1gax_A 446 LKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEK 525 (862)
T ss_dssp EEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTT
T ss_pred eecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCC
Confidence 89999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccc
Q 001303 697 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 776 (1104)
Q Consensus 697 G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~ 776 (1104)
|+|||||+||||||.++|+ +||+|+|||||++.++.++|++|+
T Consensus 526 G~KMSKSlGNvIdP~dli~-------------------------------------~yGaDalR~~ll~~~~~~~D~~fs 568 (862)
T 1gax_A 526 GQKMSKSKGNVIDPLEMVE-------------------------------------RYGADALRFALIYLATGGQDIRLD 568 (862)
T ss_dssp SCBCCTTTTCCCCHHHHHH-------------------------------------HHCHHHHHHHHHHHCCTTCCEECC
T ss_pred CCCccccCCCCCCHHHHHH-------------------------------------HcChHHHHHHHHhcCCCCCCCccC
Confidence 9999999999999999999 899999999999988899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001303 777 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 856 (1104)
Q Consensus 777 ~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~ 856 (1104)
.+.+.++++|+|++||++||+++++.+ +.|. ....+..|+||+++|+.+++.++++|++|+|+.|+++|++|+|+
T Consensus 569 ~~~l~~~~~f~nkl~N~~rf~~~~~~~-~~~~----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~ 643 (862)
T 1gax_A 569 LRWLEMARNFANKLYNAARFVLLSREG-FQAK----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWS 643 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-CCCC----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-CCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999887653 4331 12467899999999999999999999999999999999999999
Q ss_pred hHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCC
Q 001303 857 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 936 (1104)
Q Consensus 857 ~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e 936 (1104)
++||||++.+|++++++ +++++.+|+.+|+.+++||||||||+|||||+.|+. .+||+.++||+++
T Consensus 644 ~~~n~Yie~~k~~l~~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~------~~sv~~~~wP~~~- 709 (862)
T 1gax_A 644 EFCDWYLEAAKPALKAG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG------KEELALEAWPEPG- 709 (862)
T ss_dssp HTTTTHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC------CSCGGGSCCCCCC-
T ss_pred HhhHHHHHHcchhhhcc-------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC------CCeEEecCCCCCC-
Confidence 99999999999998643 246788999999999999999999999999999974 3699999999987
Q ss_pred CCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCCcccEEEEecChhHHHHHHHHHHHHHhhhccceEEEeccCCCCCCC
Q 001303 937 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKVLLSGTDEAPT 1016 (1104)
Q Consensus 937 ~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~~~~~~I~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~~~~p~ 1016 (1104)
+.|+.++..|+.++++++++|++|+++ +|+.+.++.+.+.+ .. +.++.+..+|+.++|+++| .. .|.
T Consensus 710 -~~d~~~~~~~~~~~~v~~~~r~~r~~~---~i~~~~~~~~~v~~-~~-~~~~~~~~~i~~~~~~~~~---~~----~~~ 776 (862)
T 1gax_A 710 -GRDEEAERAFEALKQAVTAVRALKAEA---GLPPAQEVRVYLEG-ET-APVEENLEVFRFLSRADLL---PE----RPA 776 (862)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHH---TCCTTCCEEEEEEE-SC-HHHHHTHHHHHHHHCEEEC---SS----CCS
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHhhhhh---cCCCCCeeEEEEeC-hH-HHHHHHHHHHHHHhCcccc---cc----ccc
Confidence 368999999999999999999999999 99665554443322 33 6788899999999999887 12 477
Q ss_pred CceEEeeeCCEEEEEecc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1017 DCAFQNVNENLKVYLKVE--VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFE 1094 (1104)
Q Consensus 1017 ~~~~~~v~~~~~v~l~l~--vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~ 1094 (1104)
+|+..++ +++++|+++. +|+++|++||.|++++++++++++++||+|++|++|||++||+++++|++++++++++++
T Consensus 777 ~~~~~~~-~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~ 855 (862)
T 1gax_A 777 KALVKAM-PRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIR 855 (862)
T ss_dssp SEEEEEC-SSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEec-CCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776654 5799999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001303 1095 NESNRLG 1101 (1104)
Q Consensus 1095 ~~l~~l~ 1101 (1104)
++|+.|+
T Consensus 856 ~~~~~~~ 862 (862)
T 1gax_A 856 EALSQIG 862 (862)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 9999873
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.2e-164 Score=1556.56 Aligned_cols=791 Identities=24% Similarity=0.379 Sum_probs=695.8
Q ss_pred cccCCCCCcccccccchhhhcCCCchhHHHHHHHHHHhcCCcccCC--CCCCCcEEEECCCCCCCCCCCcchhHHhHHHH
Q 001303 122 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 199 (1104)
Q Consensus 122 ~~~~~~t~~~~~~~~~~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 199 (1104)
++++|+|.|++| |++..+|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|
T Consensus 6 tl~lp~t~fpm~----------~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~D 75 (917)
T 1ffy_A 6 TLLMPKTDFPMR----------GGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKD 75 (917)
T ss_dssp GSCCCCCCCCSS----------CCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHH
T ss_pred hhcCCCCCCCCC----------CChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHH
Confidence 789999999876 677789999999999999999854 45788999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001303 200 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 279 (1104)
Q Consensus 200 ~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r 279 (1104)
+++||+||+||+|+|+|||||||+|||.+|+++ |++++++++++|++.|++|+.++++.|++||++||+|+||+|
T Consensus 76 ii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 76 FIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCC
Confidence 999999999999999999999999999999873 889999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeec
Q 001303 280 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 359 (1104)
Q Consensus 280 ~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l 359 (1104)
+|+||||.|+++|+++|.+|+++|+|||+.++|||||.|+|+|||+||+|++..++ .++++|++
T Consensus 151 ~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~----------------~~~v~f~~ 214 (917)
T 1ffy_A 151 PYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSA----------------SIYVAFNV 214 (917)
T ss_dssp CEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEE----------------EEECCBCC
T ss_pred CeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCc----------------eEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999886543 45678888
Q ss_pred CC------CcceEEEeeccccccccCceEEecCC---------cc-------------------ccc----------ccc
Q 001303 360 EG------GLGEIVVATTRVETMLGDTAIAIHPE---------DA-------------------RYS----------HLH 395 (1104)
Q Consensus 360 ~~------~~~~l~vaTTrPeTl~g~~aiaV~P~---------d~-------------------ry~----------~l~ 395 (1104)
.+ ++.+|+||||||||||||+||||||+ ++ +|+ +|+
T Consensus 215 ~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 294 (917)
T 1ffy_A 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELE 294 (917)
T ss_dssp CSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCT
T ss_pred cccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeeccccc
Confidence 65 25799999999999999999999998 43 555 799
Q ss_pred CcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHH
Q 001303 396 GKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKARE 475 (1104)
Q Consensus 396 G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~ 475 (1104)
|+++.|||+++.+|||.+++ |++++|||+||+|||||++||++|++|||+++++||++|++++++| .|.||++++||+
T Consensus 295 g~~~~~P~~~~~~pvi~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~-~~~G~~v~~A~~ 372 (917)
T 1ffy_A 295 WVVAQHPFLDRESLVINGDH-VTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG-QFEGMFYDKANK 372 (917)
T ss_dssp TCCCBCCTTCCSBCCCCCCS-SCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCS-SCSSSCSSHHHH
T ss_pred CCEEECCCCCCeeeEEeccc-cccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCccc-ccCCcCHHHHHH
Confidence 99999999999999999996 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc
Q 001303 476 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 555 (1104)
Q Consensus 476 ~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 555 (1104)
.|++.|++.|++++.+++.|+||+|||||++|++++++|||++|+++++++++++ .+++|+|++.++++.+||++
T Consensus 373 ~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i-----~~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 373 AVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAI-----ENTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp TTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHH-----HTSEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHH-----hcCcccCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 46999999999999999999
Q ss_pred CCCeeeeccCCCcccceEEEEccCcch-hhccC----------CCCCceEEecCHHHHHHHHhhhcCCCC-cccccCCCc
Q 001303 556 IRDWCVSRQLWWGHQIPAWYVTLEDDE-LKELG----------SYNDHWIVARDEKEALAVANKKFSGKK-FEMCQDPDV 623 (1104)
Q Consensus 556 l~DWcISRq~~WG~pIP~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~l~~d~dv 623 (1104)
++|||||||||||||||+|||.. +.. +++.. .....|+.+ ...+... ....||.++ ..+.|++||
T Consensus 448 ~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~~~~~i~~~~~~~g~~~W~~~-~~~~~~~-~~~~~~~~g~~~~~~~~D~ 524 (917)
T 1ffy_A 448 RGEWVISRQRVWGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFER-EAKDLLP-EGFTHPGSPNGTFTKETDI 524 (917)
T ss_dssp CCCEECEESCSSSCBCCCEECTT-SCEECCHHHHHHHHHHHHHHCTHHHHHS-CHHHHSS-TTCCCSSCTTSCCEECCCE
T ss_pred CccceeeccCCcCcccceeeCCC-CCEecCHHHHHHHHHHhhhcCCcccccC-CHHHhcc-cccccccCCcccccccCCC
Confidence 99999999999999999999864 211 00000 011123211 1111000 012344443 368999999
Q ss_pred eeeEeccCCcccccccCCCCChhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccccc
Q 001303 624 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 703 (1104)
Q Consensus 624 lDtWFdS~l~p~s~~g~p~~~~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS 703 (1104)
||||||||++|++.+++.. ++ .||+|++++|+||+|||+.+|++.+..++|..||++|++||||+|.+|+|||||
T Consensus 525 lD~WfdSg~~~~~~l~~~~---~~--~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKS 599 (917)
T 1ffy_A 525 MDVWFDSGSSHRGVLETRP---EL--SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKS 599 (917)
T ss_dssp ECHHHHHHTHHHHTTTTST---TC--CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSS
T ss_pred cCeecCCCCCHHHHcCCch---hc--CCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccc
Confidence 9999999999999988642 33 399999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH
Q 001303 704 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 783 (1104)
Q Consensus 704 ~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~ 783 (1104)
+||||+|.++|+ +||+|+|||||++ ++.++|++|+.+.+.+.
T Consensus 600 lGNvV~P~dvi~-------------------------------------~yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 600 LGNVIVPDQVVK-------------------------------------QKGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp SSCCCCHHHHHH-------------------------------------HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred cCCcCChHHHHH-------------------------------------hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 999999999999 8999999999998 78899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHH
Q 001303 784 RQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 862 (1104)
Q Consensus 784 r~f~nKl~N~~rf~l~~~~~~~~p~-~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Y 862 (1104)
++++++|||+++|+++++.+ |.+. ..+....++..|+||+++|+.+++.+.++|++|+|+.|++.|++|+++++||+|
T Consensus 642 ~~~~~kl~n~~r~~l~nl~~-~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Y 720 (917)
T 1ffy_A 642 SDDYRKIRNTLRFMLGNIND-FNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 720 (917)
T ss_dssp HHHHHHHHHHHHHHHHTSTT-CCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHHHhhhhc-cCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 5431 111222457899999999999999999999999999999999999977999999
Q ss_pred HHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHH
Q 001303 863 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 942 (1104)
Q Consensus 863 ie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~ 942 (1104)
++.+|++++.+... ...+++++.+|+.+++.+++||||||||+|||||+.|+.. ..+||+.+.||++++ .|+.
T Consensus 721 l~~~k~rl~~~~~~-~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~----~~~sv~~~~wP~~~~--~~~~ 793 (917)
T 1ffy_A 721 LDYGKDILYIEQRD-SHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV----KEESVHLADMPKVVE--VDQA 793 (917)
T ss_dssp HHHHHHHHTTSCTT-CHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC----SSSSGGGSCCCCCCC--CCHH
T ss_pred HHhcchhhhccCCC-cHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccC----CCCCeEecCCCCCCc--chHH
Confidence 99999998765221 1157788999999999999999999999999999999752 246999999999886 4788
Q ss_pred hHHHhHHHHHH----HHHHHHHHHHhhccCCCCccc--EEEEecChh-HHHHHHHHHHHHHhhhccceEEEec
Q 001303 943 AEFEMDLVEST----VRCIRSLRAEVLGKQKNERLP--AIAFCQTKG-VSEIIRSHELEIVTLSTSSSLKVLL 1008 (1104)
Q Consensus 943 ~e~~~e~i~~i----i~~iRslr~~~~~k~i~~~~~--~~I~~~~~~-~~~~l~~~~~~I~~L~~v~~v~i~~ 1008 (1104)
++..++.++++ ++++|.+|++. +|+..++ +.|.+.++. ..+.++.+ +.|+.+++++++++..
T Consensus 794 l~~~~~~~~~v~~~v~~~~~~~R~~~---~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~l~~~~~~s~~~~~~ 862 (917)
T 1ffy_A 794 LLDKWRTFMNLRDDVNRALETARNEK---VIGKSLEAKVTIASNDKFNASEFLTSF-DALHQLFIVSQVKVVD 862 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---SCSSGGGEEEEEECCSSCCHHHHGGGC-SCHHHHTTSSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEEeCChhhHHHHHhhH-HHHHHHhcccceEEec
Confidence 88899999885 56778888887 8866555 445444433 56667776 7799999999999864
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=5.2e-160 Score=1510.23 Aligned_cols=743 Identities=24% Similarity=0.409 Sum_probs=663.8
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 142 KEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 142 ~~y~p~~iE~~~~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
+.|+|..+|++||++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 579999999999999999999998652 578899999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001303 220 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 299 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L 299 (1104)
|||+|||.+|+++++...+..++++|+++|++.|++|+.++++.|++||++||+|+||+|+++||||.|+++|+|+|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 99999999999764211111235789999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEccEeeeecCCCCccccccccc--ccccCcceEEeecCcccccccceEeeEeeecCCC------cceEEEeec
Q 001303 300 YKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG------LGEIVVATT 371 (1104)
Q Consensus 300 ~~~GlIyr~~~~v~wcp~~~TaLsd~EVe--~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~------~~~l~vaTT 371 (1104)
+++|||||+.++|||||.|+|+|||+||+ |+++. |..++++|++.+. +.+|+||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~l~v~TT 229 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ----------------DPSVYVRFPLKEPKKLGLEKASLLIWTT 229 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE----------------EEEEEEEEEBSSGGGGTCSSEEEEEEES
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCccccc----------------CceEEEEEEecCCcccCCCCCEEEEEcC
Confidence 99999999999999999999999999994 66554 4457899999765 689999999
Q ss_pred cccccccCceEEecCC---------cccc-----------------------ccccCcEeecCCC---CCceeEEecCcc
Q 001303 372 RVETMLGDTAIAIHPE---------DARY-----------------------SHLHGKFAIHPFN---GRKIPIICDAIL 416 (1104)
Q Consensus 372 rPeTl~g~~aiaV~P~---------d~ry-----------------------~~l~G~~~~~P~~---~~~ipIi~d~~~ 416 (1104)
|||||+||+||||||+ +++| ++|+|+.+.||+. ++.+||+.+++
T Consensus 230 rP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~- 308 (821)
T 1ile_A 230 TPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADY- 308 (821)
T ss_dssp CGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTT-
T ss_pred CChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCc-
Confidence 9999999999999999 5565 4789999999995 89999999996
Q ss_pred ccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeeccccc
Q 001303 417 VDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 496 (1104)
Q Consensus 417 V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~ 496 (1104)
|++++|||+||+|||||++||++|++|||+++++||++|+++++ | |.||.+++||+.|++.|+++|++.+.+++.|+
T Consensus 309 V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~--~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~ 385 (821)
T 1ile_A 309 VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFREANRAILRDLRGRGLLFKEESYLHS 385 (821)
T ss_dssp CCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G--GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C--cCCCCHHHHHHHHHHHHHhCCCeeeeeccccc
Confidence 99999999999999999999999999999999999999999977 5 99999999999999999999999999999999
Q ss_pred ccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEecccc-HHHHHHHhccCCCeeeeccCCCcccceEEE
Q 001303 497 LGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWY 575 (1104)
Q Consensus 497 ~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRq~~WG~pIP~~~ 575 (1104)
+|+|||||++|++++++||||+++++++++++++ ++++|+|+.. .+++.+||++++|||||||||||||||+||
T Consensus 386 ~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~-----~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 460 (821)
T 1ile_A 386 YPHCWRCSTPLMYYATESWFIKNTLFKDELIRNN-----QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWV 460 (821)
T ss_dssp EEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHH-----HHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEE
T ss_pred CCEecCCCCEEEEEecchhhhchHHHHHHHHHHh-----cCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEE
Confidence 9999999999999999999999999999999998 5789999998 468999999999999999999999999999
Q ss_pred EccCcchhhccCCCCCceEEecCHHHHHHH------------------HhhhcCCCCcccccCCCceeeEeccCCccccc
Q 001303 576 VTLEDDELKELGSYNDHWIVARDEKEALAV------------------ANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSV 637 (1104)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~ 637 (1104)
|..|+. .++++ +.+++... ....|| ++..++|++||||||||||++|++.
T Consensus 461 ~~~~~~----------~~vi~-~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~ 528 (821)
T 1ile_A 461 CQACGK----------EEAIG-SFQELKARATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFAS 528 (821)
T ss_dssp ESSSSC----------CEECC-SHHHHHHHBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHT
T ss_pred ecCCCc----------EEeeC-cHHHHHhhccccccchhhhccccccccccCCC-CCCchhhcccccceecccccchHhh
Confidence 987642 22222 22222110 011244 4457899999999999999999999
Q ss_pred ccCCCCC-hhhhhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccc
Q 001303 638 LGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING 716 (1104)
Q Consensus 638 ~g~p~~~-~d~~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g 716 (1104)
++||.++ ++|++|||+|++++|+||+|||+++|++++..++|..||++|++||+|+|.+|+|||||+||||+|.++|+
T Consensus 529 ~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~- 607 (821)
T 1ile_A 529 LHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR- 607 (821)
T ss_dssp TTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT-
T ss_pred cCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHH-
Confidence 9999764 67899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHH-HHHHHHHHHHHHH
Q 001303 717 ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG-YRQWCNKLWNAVR 795 (1104)
Q Consensus 717 ~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~-~r~f~nKl~N~~r 795 (1104)
+||+|+|||||++.++.++|++|+.+.+.+ +++++|+|||+++
T Consensus 608 ------------------------------------~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~ 651 (821)
T 1ile_A 608 ------------------------------------KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYS 651 (821)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHH
T ss_pred ------------------------------------HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999999 6999999999999
Q ss_pred HHhh--hhCCCCCC-CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccC
Q 001303 796 FSMS--KLGEGFVP-PLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 872 (1104)
Q Consensus 796 f~l~--~~~~~~~p-~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~ 872 (1104)
|++. ++. ++.| ... ....++..|+|++++++.+++.+.++|++|+|+.|++.|++|+|+++||+|++.+|++++.
T Consensus 652 ~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~ 729 (821)
T 1ile_A 652 FFVTYANLD-RPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWK 729 (821)
T ss_dssp HHHHHHHHH-CCCTTSCC-CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHT
T ss_pred HHHHhhccc-cCCccccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 8752 332 3443 211 1224578899999999999999999999999999999999999999999999999987654
Q ss_pred CC-cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCC-CcccccCCCCCCCCCcHHhHHHhHHH
Q 001303 873 DN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKE-SIMLCEYPSAVEGWTDERAEFEMDLV 950 (1104)
Q Consensus 873 ~~-~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~-SI~~~~wP~~~e~~~d~~~e~~~e~i 950 (1104)
.. .. .+++++.+|+.+|+.+++||||||||+|||||+.|+...+ ...+ ||+.+.||++++.+.|++++..++.+
T Consensus 730 ~~~~~---~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~-~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~ 805 (821)
T 1ile_A 730 NEDAL---DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVR-LEAKESVHLADWPEADPALADEALVAQMRAV 805 (821)
T ss_dssp CTTTS---STTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTS-TTSCSSGGGSCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCCcH---HHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccccc-CCCCCceEeecCCCCCcccCCHHHHHHHHHH
Confidence 32 12 3457889999999999999999999999999999986311 1135 99999999999888899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 001303 951 ESTVRCIRSLRAEV 964 (1104)
Q Consensus 951 ~~ii~~iRslr~~~ 964 (1104)
+++++.+|++|+++
T Consensus 806 ~~~~~~~r~~r~~~ 819 (821)
T 1ile_A 806 LKVVDLARAARAKS 819 (821)
T ss_dssp HHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999887
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-143 Score=1373.70 Aligned_cols=740 Identities=23% Similarity=0.359 Sum_probs=618.7
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCCCCC---CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 142 KEYNPSSVEKSWYSWWENSGYFIADNKSSK---PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 142 ~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k---~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
+.|||..+|++||++|+++++|++..+ ++ ++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 469999999999999999999998764 34 89999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHH----------HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--h
Q 001303 219 DHAGIATQVVVEKKLM----------RERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--E 286 (1104)
Q Consensus 219 D~~Glp~q~~vek~l~----------~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~ 286 (1104)
||||+|++.++++... ...|+++.++ ++| ..|++|+.++++.|++||++||+|+||+|+|+||| |
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np 157 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL--WTF-EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFP 157 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH--HGG-GSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCCh
Confidence 9999999998875310 0013332222 123 36999999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCC--cc
Q 001303 287 KRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG--LG 364 (1104)
Q Consensus 287 ~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~--~~ 364 (1104)
.|+++|+|+|.+||++|||||+.++|||||.|+|+|||+||++.+..+ .+..++++|++.++ +.
T Consensus 158 ~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~--------------~~~~~~v~f~~~~~~~~~ 223 (967)
T 1wz2_A 158 PFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP--------------ILDYIIIKFELRENGEVI 223 (967)
T ss_dssp HHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC--------------EECCEEEEEECCCSSSCC
T ss_pred hHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce--------------eceeEEEEEEecCCCCce
Confidence 999999999999999999999999999999999999999999865322 23456789999765 37
Q ss_pred eEEEeeccccccccCceEEecCC---------c----cc------------cc-------------cccCcEeecCCCCC
Q 001303 365 EIVVATTRVETMLGDTAIAIHPE---------D----AR------------YS-------------HLHGKFAIHPFNGR 406 (1104)
Q Consensus 365 ~l~vaTTrPeTl~g~~aiaV~P~---------d----~r------------y~-------------~l~G~~~~~P~~~~ 406 (1104)
+|+|||||||||+||+||||||+ + ++ |+ +|+|+++.||++++
T Consensus 224 ~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~ 303 (967)
T 1wz2_A 224 YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGD 303 (967)
T ss_dssp EEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSC
T ss_pred EEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCC
Confidence 89999999999999999999999 4 32 32 69999999999999
Q ss_pred ceeEEecCccccCCCCCCceecCCCCCcchHHH----------HHHhCCc--------cceecCC---------------
Q 001303 407 KIPIICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD--------------- 453 (1104)
Q Consensus 407 ~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~----------~~~~~L~--------~~~iid~--------------- 453 (1104)
.+||+++++ |++++|||+||+|||||++||++ +++|||+ ++++|+.
T Consensus 304 ~ipi~~~~~-V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~ 382 (967)
T 1wz2_A 304 EVIILPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKL 382 (967)
T ss_dssp EEEEEECSS-CCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTS
T ss_pred ceEEEeccc-ccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhc
Confidence 999999996 99999999999999999999985 5788876 7777632
Q ss_pred ------------------------CCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeee
Q 001303 454 ------------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEP 509 (1104)
Q Consensus 454 ------------------------~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~ 509 (1104)
+|+|+ +| +|.|+.+++||+.|++.|++.|++....++.| +|+|||||+++++
T Consensus 383 ~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g-~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~ 458 (967)
T 1wz2_A 383 GIKSQKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVI 458 (967)
T ss_dssp SSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SS-SSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEE
T ss_pred cCCCccchHHHHHHHHHhhhccccCceEe--cc-CcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEE
Confidence 67776 67 89999999999999999999999987766544 7999999999999
Q ss_pred c-cccccccccch--HHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccceE---EEEccCcchh
Q 001303 510 M-IKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDEL 583 (1104)
Q Consensus 510 ~-~~~QWFl~~~~--~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~---~~~~~~~~~~ 583 (1104)
+ +++||||++++ +++.+++++ ++++|+|++.++++.+||++++||||||||+||||||+ |.+. .+
T Consensus 459 ~~~~~qWFi~~~~~~~k~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~----~~ 529 (967)
T 1wz2_A 459 KIIHDQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIE----SL 529 (967)
T ss_dssp CCCSSCEEEESCCTTHHHHHHHHH-----TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEEC----HH
T ss_pred eccCCccceecCchHHHHHHHHhh-----hccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccc----cC
Confidence 9 69999999994 999999999 57899999999999999999999999999999999994 4432 11
Q ss_pred hccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEecc----CC-ccc-ccccCCCC-----ChhhhhhCC
Q 001303 584 KELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GL-FPL-SVLGWPDD-----TDDLKAFYP 652 (1104)
Q Consensus 584 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS----~l-~p~-s~~g~p~~-----~~d~~~~~P 652 (1104)
.+++.|...+.+++..+++. ..++.....+ .++++|+||++ |. +++ ...|||.. +++|++|||
T Consensus 530 ~ds~iYv~~~~~~~~~~~~~----~~~g~~~~~l--~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P 603 (967)
T 1wz2_A 530 SDSTIYMAYYTISRHINKLR----QEGKLDPEKL--TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYP 603 (967)
T ss_dssp HHTTSTHHHHHHHHHHHHHH----HTTCCCGGGC--CHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCS
T ss_pred CCCceEeehhhhhhHHHHHH----HhcCCChHHc--CcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCC
Confidence 22223322223333332221 1222211112 45899999965 22 111 24588864 367899999
Q ss_pred cCcccccccccccHHHHHHHHHHhhcCCCCc-eEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001303 653 TSVLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 731 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW~arm~~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l 731 (1104)
+|++++|+||+|||..++++++..+.+..|| +.|++||||++ +|+|||||+||||+|.++|+
T Consensus 604 ~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~---------------- 666 (967)
T 1wz2_A 604 LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE---------------- 666 (967)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHH----------------
T ss_pred CeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHH----------------
Confidence 9999999999999999999999888887666 99999999996 89999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCC
Q 001303 732 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 811 (1104)
Q Consensus 732 ~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~ 811 (1104)
+||+|+|||||++.++.++|++|+.+.+.++++|++++||+++++++.. .|.
T Consensus 667 ---------------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~--- 718 (967)
T 1wz2_A 667 ---------------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG--- 718 (967)
T ss_dssp ---------------------TTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC----CCC---
T ss_pred ---------------------HhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC----CCC---
Confidence 8999999999998889999999999999999999999999999886431 111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHH
Q 001303 812 HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVC 891 (1104)
Q Consensus 812 ~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~ 891 (1104)
....+..|+||+++++.+++.++++|++|+|+.|+.+++.|+++ .+|+|++.+|+. .+++++.+|+.+
T Consensus 719 -~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~-~~n~Yi~~~k~~----------~~~~~~~~l~~~ 786 (967)
T 1wz2_A 719 -NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRRTEGR----------DDEAKRYVLRTL 786 (967)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHHTTTC----------CCHHHHHHHHHH
T ss_pred -cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHHHHHhccch----------hHHHHHHHHHHH
Confidence 12456889999999999999999999999999999988766644 589999998853 123677899999
Q ss_pred HHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHhHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 001303 892 LETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNE 971 (1104)
Q Consensus 892 l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~e~~~e~i~~ii~~iRslr~~~~~k~i~~ 971 (1104)
|+.+++||||||||+|||||+.|+. .+||+.+.||++++.+.|+.++..++.++++++.+|++|+.. +++.
T Consensus 787 l~~l~~LLaP~~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~---~~~~ 857 (967)
T 1wz2_A 787 ADVWVRLMAPFTPHICEELWEKLGG------EGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVA---KIEN 857 (967)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHSSC------CSCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTS---CCCC
T ss_pred HHHHHHHhccccchHHHHHHHhcCC------CCceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence 9999999999999999999999974 369999999999988899999999999999999999999998 7733
Q ss_pred cccEEEEecChhHH
Q 001303 972 RLPAIAFCQTKGVS 985 (1104)
Q Consensus 972 ~~~~~I~~~~~~~~ 985 (1104)
...+.|.+.+++..
T Consensus 858 p~~~~i~~~~~~~~ 871 (967)
T 1wz2_A 858 AKRAYIYTAEDWKW 871 (967)
T ss_dssp SBEEEECCCTTTTT
T ss_pred CCeEEEEECCHHHH
Confidence 35667766665433
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=7.8e-135 Score=1268.64 Aligned_cols=648 Identities=24% Similarity=0.389 Sum_probs=529.9
Q ss_pred hhhhcCCCchhHHHHHHHHHHhcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 138 KQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 138 ~~~~~~y~p~~iE~~~~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
..|.+.|||++||++||++|+++++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|
T Consensus 19 ~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G 98 (880)
T 4arc_A 19 SHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIG 98 (880)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred ccccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecC
Confidence 45888999999999999999999999998766789999999999999999999999999999999999999999999999
Q ss_pred CCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHH
Q 001303 218 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 297 (1104)
Q Consensus 218 ~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~ 297 (1104)
|||||+|++..+++ .|++ +++|+.++++.|++||++||+++||+|+++||||.|+++|+++|.
T Consensus 99 ~D~~Glpie~~a~~-----~g~~------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~ 161 (880)
T 4arc_A 99 WDAFGLPAEGAAVK-----NNTA------------PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFT 161 (880)
T ss_dssp ECCCSTHHHHHHHH-----TTSC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHH
Confidence 99999999887753 4654 358999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEccEeeeecCCCCccccccccc------------ccccCcceEEeecCcccccc-----------------
Q 001303 298 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVD------------YVDIPKREMRNVPGYEKQVE----------------- 348 (1104)
Q Consensus 298 ~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe------------~~~~~~~t~~~~~~y~~~~~----------------- 348 (1104)
+|+++||||++.++|||||.|+|+|||+||. +++.. ..+++++.|++.+.
T Consensus 162 ~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~-~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~ 240 (880)
T 4arc_A 162 ELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIP-QWFIKITAYADELLNDLDKLDHWPDTVKTMQ 240 (880)
T ss_dssp HHHHTTCEEEEEECC------------------------------CEE-EEEECGGGGHHHHHHHGGGCTTSCHHHHHHH
T ss_pred HHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEcc-ceEEeechhHHHHHHHHhhcccccHHHHHHH
Confidence 9999999999999999999999999997663 44433 35677777764221
Q ss_pred ---cc--eEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccc-----------------------------
Q 001303 349 ---FG--VLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL----------------------------- 394 (1104)
Q Consensus 349 ---~g--~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l----------------------------- 394 (1104)
+| .-.+++|++.+++.+|+|||||||||+|+|||||||++++|.++
T Consensus 241 ~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (880)
T 4arc_A 241 RNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEK 320 (880)
T ss_dssp HHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------
T ss_pred HhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhcccee
Confidence 11 23578899988888999999999999999999999999987543
Q ss_pred ----cCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC---------------CC
Q 001303 395 ----HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---------------DG 455 (1104)
Q Consensus 395 ----~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~---------------~G 455 (1104)
+|++++||++|+++||+.++| |++++||||||+|||||++||++|++||||++++|+. +|
T Consensus 321 ~g~~~g~~~~~P~~~~~ipi~~~~y-V~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g 399 (880)
T 4arc_A 321 KGVDTGFKAVHPLTGEEIPVWAANF-VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 399 (880)
T ss_dssp CEEEEEEEEECTTTCCEEEEEEETT-SCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCC
T ss_pred eccccCcEEecCCCCCEeEEEEeCc-cccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCc
Confidence 799999999999999999996 9999999999999999999999999999999999863 35
Q ss_pred ccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCC
Q 001303 456 KINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK 535 (1104)
Q Consensus 456 ~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~ 535 (1104)
.+. |+| .|.||++++||++|++.|+++|++.+.
T Consensus 400 ~~~-ns~-~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------- 432 (880)
T 4arc_A 400 VLF-NSG-EFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------- 432 (880)
T ss_dssp CBC-SSG-GGTTCCHHHHHHHHHHHHHHTTSEEEE---------------------------------------------
T ss_pred eee-cCc-ccCCCCHHHHHHHHHHHHHHcCCccee---------------------------------------------
Confidence 543 577 899999999999999999999986432
Q ss_pred CceEEeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch------hhccCCCCCceE--EecCHHHHHHHHh
Q 001303 536 KKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHWI--VARDEKEALAVAN 607 (1104)
Q Consensus 536 ~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~e~~~~~~ 607 (1104)
+.+ +++|||||||||||+|||+|||..|+.. ++...+. +... .+.....+..+..
T Consensus 433 --v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~-~~~~~~~g~pl~~~~~w~~ 495 (880)
T 4arc_A 433 --VNY--------------RLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPE-DVVMDGITSPIKADPEWAK 495 (880)
T ss_dssp --EEE--------------SCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCS-SCCCCSSSCHHHHSTTTTE
T ss_pred --EEE--------------EcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccch-hcccCCCCCchHhCcccee
Confidence 111 5899999999999999999999887631 1111111 0000 1112222222234
Q ss_pred hhcCCCCcccccCCCceeeEeccCCcccccccCCCCC------hhhhhhCCcCccccccc--ccccHHHHHHHHHHh---
Q 001303 608 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT------DDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK--- 676 (1104)
Q Consensus 608 ~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~------~d~~~~~P~d~~~~G~D--il~fW~arm~~~~~~--- 676 (1104)
..||+ ..++|++|||||||||+ |||+.++||.++ +++++|||+|++++|.| |+|+|++|+....+.
T Consensus 496 ~~cpg--~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g 572 (880)
T 4arc_A 496 TTVNG--MPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAG 572 (880)
T ss_dssp EESSS--SEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTT
T ss_pred eccCC--CcceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhh
Confidence 46773 46899999999999998 788889999853 56889999999999977 788888885432222
Q ss_pred -hcCCCCceEEEEcccee-------CCCCc------------------------------------cccccCCCccCccc
Q 001303 677 -LGGEVPFTKVYLHPMIR-------DAHGR------------------------------------KMSKSLGNVIDPLE 712 (1104)
Q Consensus 677 -l~g~~PFk~V~~Hg~v~-------D~~G~------------------------------------KMSKS~GNvIdP~d 712 (1104)
+.++.||++|++||||+ |.+|+ |||||+||||||.+
T Consensus 573 ~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~d 652 (880)
T 4arc_A 573 MVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQV 652 (880)
T ss_dssp SCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHH
T ss_pred cccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHH
Confidence 36789999999999995 88998 99999999999999
Q ss_pred cccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHH
Q 001303 713 VINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWN 792 (1104)
Q Consensus 713 ii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N 792 (1104)
+|+ +||||+||||+++.++.++|++|+.+.+.++++|++++||
T Consensus 653 iIe-------------------------------------kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn 695 (880)
T 4arc_A 653 MVE-------------------------------------RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWK 695 (880)
T ss_dssp HHH-------------------------------------HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------------------------HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 999 9999999999999989999999999999999999999999
Q ss_pred HHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhHhHHHHHhhccccc
Q 001303 793 AVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA 871 (1104)
Q Consensus 793 ~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~ 871 (1104)
++++++..... + ......++..|+|++++|+++++.++++|+ +|+|+.|+++||+|+ ++++. | .
T Consensus 696 ~~~~~~~~~~~---~--~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~--------~ 760 (880)
T 4arc_A 696 LVYEHTAKGDV---A--ALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A--------P 760 (880)
T ss_dssp HHHHHHHTCCC---C--CCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S--------C
T ss_pred HHHHHHhcccc---c--ccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h--------h
Confidence 99987654211 1 111234678999999999999999999998 899999999999997 55432 1 1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCC
Q 001303 872 GDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 936 (1104)
Q Consensus 872 ~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e 936 (1104)
.+. ..+..+|+.+++.+++||||||||+|||||+.|+. .+||+.++||++++
T Consensus 761 -~~~------~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~------~~sv~~~~wP~~d~ 812 (880)
T 4arc_A 761 -TDG------EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKG------EGDIDNAPWPVADE 812 (880)
T ss_dssp -CSS------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC------SSCGGGSCCCCCCH
T ss_pred -ccc------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcCC------CCeEEeCCCCCCCH
Confidence 111 23467899999999999999999999999999986 36999999999875
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=9.8e-133 Score=1259.89 Aligned_cols=668 Identities=23% Similarity=0.380 Sum_probs=544.0
Q ss_pred CCCchhHHHHHHHHHHhcCCcccCC-CCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCc
Q 001303 143 EYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA 221 (1104)
Q Consensus 143 ~y~p~~iE~~~~~~W~~~~~f~~~~-~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~ 221 (1104)
.|||..+|++||++|+++++|++.. +.++++|++++|||||||.||||||++++++|+++||+||+||+|+|++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6999999999999999999999987 667789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHh
Q 001303 222 GIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYK 301 (1104)
Q Consensus 222 Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~ 301 (1104)
|+||+..+++ .|++ +++|++++++.|++||++||+++||+|+++|+||.|.++++++|.+|++
T Consensus 83 Glpie~~a~k-----~g~~------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 145 (878)
T 2v0c_A 83 GLPAENAALK-----FGVH------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWE 145 (878)
T ss_dssp SHHHHHHHHH-----TTCC------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999988764 4654 4689999999999999999999999999999999999999999999999
Q ss_pred cCcEEEccEeeeecCCCCcccccccccccc--c-Cc---------ceEEeecCcccccc-------------------cc
Q 001303 302 EGLIYRDLRLVNWDCVLRTAISDIEVDYVD--I-PK---------REMRNVPGYEKQVE-------------------FG 350 (1104)
Q Consensus 302 ~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~--~-~~---------~t~~~~~~y~~~~~-------------------~g 350 (1104)
+|+||++.++|+|||.|+|+|||+||++.. . .+ ..+++++.|+..+. +|
T Consensus 146 kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 146 KGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225 (878)
T ss_dssp TTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHC
T ss_pred CCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhc
Confidence 999999999999999999999999996432 1 11 12456777653211 01
Q ss_pred --eEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccc----------------------------------
Q 001303 351 --VLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHL---------------------------------- 394 (1104)
Q Consensus 351 --~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l---------------------------------- 394 (1104)
.-..++|++.+++.+|+|||||||||+|++||||||+++++..+
T Consensus 226 ~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 305 (878)
T 2v0c_A 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGV 305 (878)
T ss_dssp EEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE
T ss_pred cccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeE
Confidence 23568899988888999999999999999999999999987543
Q ss_pred -cCcEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCC---------cccc-----
Q 001303 395 -HGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDG---------KINS----- 459 (1104)
Q Consensus 395 -~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G---------~~~~----- 459 (1104)
+|+++.||++++++||+.+++ |++++||||||+|||||++||++|++||||++++|+++| .+++
T Consensus 306 ~~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ 384 (878)
T 2v0c_A 306 FLGAYALNPATGERIPIWTADY-VLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV 384 (878)
T ss_dssp EEEEEEECTTTCCEEEEEECTT-SCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEEC
T ss_pred ecCcEEECCCCCCEeEEEEeCc-ccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEe
Confidence 799999999999999999996 999999999999999999999999999999999998522 2322
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceE
Q 001303 460 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 539 (1104)
Q Consensus 460 ~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~ 539 (1104)
|+| .|.||++++||++|++.|+++|+..+ .+.
T Consensus 385 ns~-~~~Gl~~~eA~~~Ii~~L~~~g~~~~-----------------------------------------------~v~ 416 (878)
T 2v0c_A 385 NSG-PFDGTESEEGKRKVIAWLEEKGLGKG-----------------------------------------------RVT 416 (878)
T ss_dssp SSG-GGTTCBHHHHHHHHHHHHHHHTSEEE-----------------------------------------------EEE
T ss_pred cCC-CCCCcCHHHHHHHHHHHHHHCCCCCC-----------------------------------------------ceE
Confidence 467 89999999999999999999998532 111
Q ss_pred EeccccHHHHHHHhccCCCeeeeccCCCcccceEEEEccCcch------hhccCCCCCceE--E--ec-CHHHHHHHHhh
Q 001303 540 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHWI--V--AR-DEKEALAVANK 608 (1104)
Q Consensus 540 ~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~------~~~~~~~~~~~~--~--~~-~~~e~~~~~~~ 608 (1104)
+ +++|||||||||||||||+|||..|+.. ++..-+....+. . +. ....+......
T Consensus 417 ~--------------rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~ 482 (878)
T 2v0c_A 417 Y--------------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYET 482 (878)
T ss_dssp E--------------SCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEE
T ss_pred E--------------ecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCC
Confidence 1 5899999999999999999999876531 110000000010 0 01 11222233345
Q ss_pred hcCCCCcccccCCCceeeEeccCCcccccccCCCCC------hhhhhhCCcCccccccc--ccccHHHHHHHHHHh----
Q 001303 609 KFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT------DDLKAFYPTSVLETGHD--ILFFWVARMVMLGIK---- 676 (1104)
Q Consensus 609 ~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~------~d~~~~~P~d~~~~G~D--il~fW~arm~~~~~~---- 676 (1104)
.||.++..++|++|||||||||+ ||+..++||+++ +++++|||+|++++|.| |+|+|++||++..+.
T Consensus 483 ~cp~cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~ 561 (878)
T 2v0c_A 483 TCPKCGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGM 561 (878)
T ss_dssp ECTTTCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 68877778999999999999998 777788898753 67899999999999976 578899998775544
Q ss_pred hcCCCCceEEEEccceeCC----------------------------------------------CC-------cccccc
Q 001303 677 LGGEVPFTKVYLHPMIRDA----------------------------------------------HG-------RKMSKS 703 (1104)
Q Consensus 677 l~g~~PFk~V~~Hg~v~D~----------------------------------------------~G-------~KMSKS 703 (1104)
+.++.||++|++||||+|. +| +|||||
T Consensus 562 ~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKS 641 (878)
T 2v0c_A 562 VKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKS 641 (878)
T ss_dssp CSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGG
T ss_pred ccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhcc
Confidence 4668999999999999984 99 999999
Q ss_pred CCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH
Q 001303 704 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 783 (1104)
Q Consensus 704 ~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~ 783 (1104)
+||||||.++|+ +||||+|||||++.++.++|++|+.+.+.++
T Consensus 642 kGNvVdP~diI~-------------------------------------~yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 642 KGNGVMVGPFVK-------------------------------------EQGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp GTCCCBHHHHHH-------------------------------------HSCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred CCCcccHHHHHH-------------------------------------HcCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 999999999999 9999999999999899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHH
Q 001303 784 RQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 863 (1104)
Q Consensus 784 r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yi 863 (1104)
++|++++||++++....+.... + ......++..|+|++++++++++.++++|++|+|+.|+++|++|+ +++ +.|.
T Consensus 685 ~~~l~Rl~n~~~~~~~~~~~~~-~--~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l-~k~~ 759 (878)
T 2v0c_A 685 WRFLNRIYRRVAEDREALLETS-G--VFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NAL-YEYR 759 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-C--CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcccccc-c--ccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHH-hhhc
Confidence 9999999999988766542100 0 111224578999999999999999999999999999999999998 555 4454
Q ss_pred HhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCCCCCCCCCCcccccCCCCCCCCCcHHh
Q 001303 864 EAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERA 943 (1104)
Q Consensus 864 e~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~~~~~~~~SI~~~~wP~~~e~~~d~~~ 943 (1104)
+. + .. ..+|+.+|+.+++||||||||+|||||+.|+ .+||+.++||++++.+. .
T Consensus 760 ~~-------~-~~--------~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-------~~sv~~~~wP~~d~~~l---~ 813 (878)
T 2v0c_A 760 KD-------R-PV--------TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-------PDSLFEAGWPELDEKAL---E 813 (878)
T ss_dssp HH-------C-CS--------CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-------SSCGGGSCCCCCCGGGG---C
T ss_pred cc-------c-hh--------HHHHHHHHHHHHHHHcccchHHHHHHHHHcC-------CCceeecCCCCCCHHHH---H
Confidence 32 1 11 1579999999999999999999999999997 26999999999887543 4
Q ss_pred HHHhHHHHHHHHHHHH
Q 001303 944 EFEMDLVESTVRCIRS 959 (1104)
Q Consensus 944 e~~~e~i~~ii~~iRs 959 (1104)
+..++.+.++++++|.
T Consensus 814 ~~~~~~~vqvngkvR~ 829 (878)
T 2v0c_A 814 KDVVEVAVQVNGAVAG 829 (878)
T ss_dssp ----------------
T ss_pred HHHHHHHHhhHHHHHH
Confidence 5678888888776665
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-128 Score=1222.37 Aligned_cols=683 Identities=22% Similarity=0.350 Sum_probs=560.7
Q ss_pred cCCCchhHHHHHHHHHHhcCCcccCCCC--CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 142 KEYNPSSVEKSWYSWWENSGYFIADNKS--SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 142 ~~y~p~~iE~~~~~~W~~~~~f~~~~~~--~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
..|||..+|++||++|+++++|++..+. ++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 4699999999999999999999987642 46899999999999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHH-----HHcCCCccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHH
Q 001303 220 HAGIATQVVVEKKLM-----RERKLTRHDIGREQF--VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSK 290 (1104)
Q Consensus 220 ~~Glp~q~~vek~l~-----~~~g~~~~~~~re~f--~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d--~~~~~ 290 (1104)
|||+|++.++++... .+.-.....++++++ ...|++|++++.+.|++||++||+++||+++|+||| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 999999988875210 000000112334333 236999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCc--ceEEE
Q 001303 291 AVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVV 368 (1104)
Q Consensus 291 ~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~--~~l~v 368 (1104)
+|+++|.+|+++|+||++.++|+|||.|+|+|||+||++.+... .+..++++|++.+++ .+|+|
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~--------------~~~~~~v~f~~~~~~~~~~l~v 227 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP--------------ILDYIIIKFELRENGEVIYLPA 227 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCC--------------EEEEEEEEEECCSSCSCCEEEE
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCc--------------cceeEEEEEEccCCCCceEEEE
Confidence 99999999999999999999999999999999999998765322 234577899997653 68999
Q ss_pred eeccccccccCceEEecCCc-------------c------------cc-------------ccccCcEeecCCCCCceeE
Q 001303 369 ATTRVETMLGDTAIAIHPED-------------A------------RY-------------SHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 369 aTTrPeTl~g~~aiaV~P~d-------------~------------ry-------------~~l~G~~~~~P~~~~~ipI 410 (1104)
||||||||+|++||||||+. + +| .+|+|+++.||++++.+||
T Consensus 228 ~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi 307 (810)
T 1wkb_A 228 ATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVII 307 (810)
T ss_dssp EESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEE
T ss_pred EcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEE
Confidence 99999999999999999993 2 23 2699999999999999999
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHH----------HHhCCc--------cceecCC-------------------
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVG----------KRHNLE--------FINIFTD------------------- 453 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~----------~~~~L~--------~~~iid~------------------- 453 (1104)
+.+++ |++++|||+||+|||||++||+++ ++|||+ ++++|+.
T Consensus 308 ~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~ 386 (810)
T 1wkb_A 308 LPAEF-VDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKS 386 (810)
T ss_dssp EECTT-SCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCC
T ss_pred EecCc-ccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCC
Confidence 99996 999999999999999999999864 678876 7887742
Q ss_pred --------------------CCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeecccccccccccCCCeeeec-cc
Q 001303 454 --------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IK 512 (1104)
Q Consensus 454 --------------------~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~-~~ 512 (1104)
+|+|+ +| +|.|+.+++||+.|++.|++.|++....++.| +|+|+|||++|+++ ++
T Consensus 387 ~~d~~~~~~~~~~~~~~~~~~G~~~--~g-~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~ 462 (810)
T 1wkb_A 387 QKDKEKLEQATKTIYKAEYHKGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIH 462 (810)
T ss_dssp CTTCSCTHHHHHHHHHHHHHSCEEC--SG-GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEE
T ss_pred cchhhhhhhhhhhhhhccccCceEe--cc-CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecC
Confidence 57776 67 89999999999999999999999988777665 79999999999988 79
Q ss_pred cccccccch--HHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCcccce---EEEEccCcchhhccC
Q 001303 513 PQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIP---AWYVTLEDDELKELG 587 (1104)
Q Consensus 513 ~QWFl~~~~--~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP---~~~~~~~~~~~~~~~ 587 (1104)
+||||++++ +++.+++++ +++.|+|++.++++.+||++++||||||||+|||||| .|.+... .++.
T Consensus 463 ~qwF~~~~~~~~~~~~l~~~-----~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~----~~~~ 533 (810)
T 1wkb_A 463 DQWFIDYGNPEWKEKARKAL-----ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESL----SDST 533 (810)
T ss_dssp EEEEECTTCHHHHHHHHHHH-----HTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTT----TSSS
T ss_pred CceeEecChHHHHHHHHhhh-----cccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccC----CCCc
Confidence 999999995 999999999 5689999999999999999999999999999999999 3544311 1111
Q ss_pred CCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEecc----CCc-cc-ccccCCCC-----ChhhhhhCCcCcc
Q 001303 588 SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSS----GLF-PL-SVLGWPDD-----TDDLKAFYPTSVL 656 (1104)
Q Consensus 588 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS----~l~-p~-s~~g~p~~-----~~d~~~~~P~d~~ 656 (1104)
.|...+.+.+..+++ ...++.... .-.++++|+||.+ |.+ ++ ...|||.. +++|++|||.|++
T Consensus 534 iYv~~~~~~~~~~~~----~~~~~~~~~--~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~ 607 (810)
T 1wkb_A 534 IYMAYYTISRHINKL----RQEGKLDPE--KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWR 607 (810)
T ss_dssp SHHHHHHHHHHHHHH----HHTTCCCGG--GCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEE
T ss_pred eeeehhhhHHHHHHh----HhhcCCCHH--HcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEE
Confidence 111011111111111 112221111 1245899999964 321 11 14578754 3568999999999
Q ss_pred cccccccccHHHHHHHHHHhhcCCCCc-eEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHH
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKE 735 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~PF-k~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e 735 (1104)
++|+||+|||...+++++..+.+..|| +.|++||||++ +|+|||||+||||+|.++|+
T Consensus 608 ~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~-------------------- 666 (810)
T 1wkb_A 608 CSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE-------------------- 666 (810)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHH--------------------
T ss_pred eecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHH--------------------
Confidence 999999999999999888888886555 99999999995 89999999999999999998
Q ss_pred HHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCC
Q 001303 736 LEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHN 815 (1104)
Q Consensus 736 ~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~~~~~~ 815 (1104)
+||+|+|||||++.++.++|++|+.+.+.++++|++++||+++++.+.. .|. ...
T Consensus 667 -----------------~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~----~~~----~~~ 721 (810)
T 1wkb_A 667 -----------------ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE----VKG----NVE 721 (810)
T ss_dssp -----------------HHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC----CCS----CCC
T ss_pred -----------------HcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc----Ccc----ccc
Confidence 8999999999998888999999999999999999999999999886431 111 123
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHH
Q 001303 816 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETG 895 (1104)
Q Consensus 816 ~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~ 895 (1104)
.+..|+||+++++.+++.+.++|++|+|+.|+.+++.+++ ..+|+|++.+|+. + . ...+.+|+.+++.+
T Consensus 722 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~-~~~n~yi~~~k~~----~-----~-~~~~~~l~~~l~~l 790 (810)
T 1wkb_A 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLRRTEGR----D-----D-EAKRYVLRTLADVW 790 (810)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHTTTC----C-----C-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHHHHhcCc----c-----h-hHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999997754443 4589999998852 1 1 11267999999999
Q ss_pred HHHHhchhhHHHHHHHHHCC
Q 001303 896 LRLLHPFMPFVTEELWQRLP 915 (1104)
Q Consensus 896 l~LL~PfmPfitEeLwq~L~ 915 (1104)
++||||||||+|||||++|+
T Consensus 791 ~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 791 VRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHHhcC
Confidence 99999999999999999984
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.3e-92 Score=861.05 Aligned_cols=473 Identities=20% Similarity=0.250 Sum_probs=400.8
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHH
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 248 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~ 248 (1104)
+..++|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.++++ +|+++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k-----~g~~~------- 73 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ-----KQVSP------- 73 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----TTSCH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-----cCCCH-------
Confidence 345789999999999999999999999999999999999999999999999999999888764 57775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccc
Q 001303 249 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 328 (1104)
Q Consensus 249 f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe 328 (1104)
++|++++++.|+++|++||+++|| ++.||||.|.++|+++|.+|+++|+||++.++|+|||+|+|+|+|.||+
T Consensus 74 -----~e~~~~~~~~~~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 74 -----YDFTTAVAGEFKKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence 378999999999999999999997 5679999999999999999999999999999999999999999998774
Q ss_pred ccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCce
Q 001303 329 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 408 (1104)
Q Consensus 329 ~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~i 408 (1104)
..
T Consensus 147 ~~------------------------------------------------------------------------------ 148 (542)
T 3u1f_A 147 DG------------------------------------------------------------------------------ 148 (542)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 20
Q ss_pred eEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 409 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 409 pIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
+ +.+|
T Consensus 149 --------~-----------------------------------------~~~g-------------------------- 153 (542)
T 3u1f_A 149 --------V-----------------------------------------DKDG-------------------------- 153 (542)
T ss_dssp --------E-----------------------------------------CTTS--------------------------
T ss_pred --------c-----------------------------------------cccC--------------------------
Confidence 0 0111
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhcc-CCCeeeeccCC-
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW- 566 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRq~~- 566 (1104)
+.+++|+|||++++++.++|||++++.+++++++++ +++...+.|+..++.+.+|+++ ++||||||||+
T Consensus 154 ------~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~ 224 (542)
T 3u1f_A 154 ------NPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWY---HANPGCIVPEFRRREVIRAVEKGLPDLSVSRARAT 224 (542)
T ss_dssp ------CEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGG
T ss_pred ------ccccccCCCCCcceeeccccceecchhHHHHHHHHH---hhcccccCCchhhHhHhhhhhccccccCccccccC
Confidence 124789999999999999999999999999999998 7778889999999999999976 99999999998
Q ss_pred ---CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCC
Q 001303 567 ---WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD 643 (1104)
Q Consensus 567 ---WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~ 643 (1104)
||+|||.+ +..++++|||+...+++..+++.+
T Consensus 225 ~~~WGipiP~~---------------------------------------------~~~~~~vw~da~~~~~~~~~~~~~ 259 (542)
T 3u1f_A 225 LHNWAIPVPGN---------------------------------------------PDHXVYVWLDALTNYLTGSRLRVD 259 (542)
T ss_dssp GTTCSCEETTE---------------------------------------------EEEEECHHHHHHTHHHHHHTEEEC
T ss_pred cCCCCCccCCC---------------------------------------------cCeeeeeeeccchhhhhhhhcccc
Confidence 99999942 114677888877666555443211
Q ss_pred ----------ChhhhhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccC
Q 001303 644 ----------TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 709 (1104)
Q Consensus 644 ----------~~d~~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvId 709 (1104)
..+...+||.|++++|+||++| |+++|++.| ..|++.|++||++. .+|+|||||+||||+
T Consensus 260 ~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g-----~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~ 333 (542)
T 3u1f_A 260 ESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAG-----LPLPKKIVAHGWWT-KDRKKISKSLGNVFD 333 (542)
T ss_dssp TTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHT-----CCCCSCEEEECCCE-ETTBCCBTTTTBCCC
T ss_pred ccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhc-----ccccceecccccee-cCCceeccccCCCCC
Confidence 1112235899999999999998 777777654 45789999999976 789999999999999
Q ss_pred ccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHH
Q 001303 710 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWC 787 (1104)
Q Consensus 710 P~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~ 787 (1104)
|.++|+ +||+|+|||||++.++.++|++|+.+.+.+.. .|+
T Consensus 334 p~~~i~-------------------------------------~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~ 376 (542)
T 3u1f_A 334 PVEKAE-------------------------------------EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELA 376 (542)
T ss_dssp HHHHHH-------------------------------------HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTT
T ss_pred hhHHHh-------------------------------------hcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHH
Confidence 999999 89999999999998999999999999987653 399
Q ss_pred HHHHHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhc
Q 001303 788 NKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIK 867 (1104)
Q Consensus 788 nKl~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K 867 (1104)
|+|||++++++....+ +.. .......++..|+||+++++.+++.++++|++|+|+.|++.|++|+ ++||+|++..+
T Consensus 377 n~l~N~~~r~~~~~~~-~~~-~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~ 452 (542)
T 3u1f_A 377 DTLGNLVMRCTSAKIN-VNG-EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMA 452 (542)
T ss_dssp TTHHHHHHHHHCTTTS-TTS-BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhc-ccC-CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 9999999888765332 111 1112236778999999999999999999999999999999999996 68999999999
Q ss_pred cc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCC
Q 001303 868 PY-FAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 917 (1104)
Q Consensus 868 ~~-l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~ 917 (1104)
|| +..++.+ ..+.+..+++.++..+++||||||||+||+||++|+..
T Consensus 453 pw~l~k~d~~---~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~ 500 (542)
T 3u1f_A 453 PWKLVKTDPE---RLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500 (542)
T ss_dssp HHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred chhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCC
Confidence 98 3333433 44556677777888889999999999999999999753
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3.7e-91 Score=867.90 Aligned_cols=492 Identities=19% Similarity=0.268 Sum_probs=410.2
Q ss_pred CcEEEECCCCCCCCCCCcchhHH-hHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~-~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
++|+|++|||||||.||||||++ ++++|+++||+||+||+|+|++||||||+|||.++++ +|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k-----~G~~p--------- 67 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-----EGRSP--------- 67 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTCCH---------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-----cCCCH---------
Confidence 47999999999999999999998 9999999999999999999999999999999999875 37764
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
++|++++++.|+++|++||+++|| +++|+||.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.+|+.
T Consensus 68 ---~e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g- 141 (722)
T 1rqg_A 68 ---REIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG- 141 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS-
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc-
Confidence 589999999999999999999886 68899999999999999999999999999999999999999999965531
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
+||.|+.
T Consensus 142 ---------------------------------------------------------------------tcP~c~~---- 148 (722)
T 1rqg_A 142 ---------------------------------------------------------------------TCPYCGA---- 148 (722)
T ss_dssp ---------------------------------------------------------------------BCSSSCC----
T ss_pred ---------------------------------------------------------------------ccCccCC----
Confidence 1344432
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
. +..|.+|++||..+
T Consensus 149 ------------------------~----------------~~~Gd~c~~~G~~l------------------------- 163 (722)
T 1rqg_A 149 ------------------------E----------------DQKGDQCEVCGRPL------------------------- 163 (722)
T ss_dssp ------------------------S----------------CCCTTTCSSSCCCC-------------------------
T ss_pred ------------------------c----------------cCCcchhhhccccc-------------------------
Confidence 1 12566677777222
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHh-ccCCCeeeeccCCCcc
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQLWWGH 569 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRq~~WG~ 569 (1104)
.+..+..|+|+|||++++++.++|||++++++++.+++++ ++. . +|++.++++.+|| ++++|||||||++||+
T Consensus 164 ~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~---~~~--~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~ 237 (722)
T 1rqg_A 164 TPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWI---EKQ--P-WKPNVKNMVLSWIEEGLEERAITRDLNWGI 237 (722)
T ss_dssp CTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHH---HSS--C-CCHHHHHHHHHHHTTCCCCEECEECCSSSC
T ss_pred ChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHH---HhC--C-CCHHHHHHHHHHHHCCCcccceeccccCcc
Confidence 2345668999999999999999999999999999999999 544 3 5999999999999 8999999999999999
Q ss_pred cceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCccccccc-CCC---CCh
Q 001303 570 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 645 (1104)
Q Consensus 570 pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g-~p~---~~~ 645 (1104)
|||+|++.. +.+|+|||||+.+.+++.++ |+. ..+
T Consensus 238 piP~~~~g~-----------------------------------------~~~~iyvW~da~i~y~~~~~~~~~~~g~~~ 276 (722)
T 1rqg_A 238 PVPLDEEDM-----------------------------------------KGKVLYVWFEAPIGYISITIEHFKRIGKPN 276 (722)
T ss_dssp BCSCCCSSS-----------------------------------------TTCEECHHHHGGGHHHHHHHHHHHHTTCTT
T ss_pred ccCccccCC-----------------------------------------CCCEEEEEeccccchhhhHHHHHhhcCCch
Confidence 999753210 22699999999998887664 543 223
Q ss_pred hhhhhCCc-C-----ccccccccccc----HHHHHHHHHH-----hhcC-CCCceEEEEccceeCCCCccccccCCCccC
Q 001303 646 DLKAFYPT-S-----VLETGHDILFF----WVARMVMLGI-----KLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVID 709 (1104)
Q Consensus 646 d~~~~~P~-d-----~~~~G~Dil~f----W~arm~~~~~-----~l~g-~~PFk~V~~Hg~v~D~~G~KMSKS~GNvId 709 (1104)
+|+.|||. + ++++|+||++| |++.+++.+. .+.| .+| ++|++||||++ +|+|||||+||||+
T Consensus 277 ~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~ 354 (722)
T 1rqg_A 277 EWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIW 354 (722)
T ss_dssp TTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCB
T ss_pred HHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCC
Confidence 67778872 2 89999999988 8885543331 0112 567 99999999997 99999999999999
Q ss_pred ccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHH--HH
Q 001303 710 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WC 787 (1104)
Q Consensus 710 P~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~--f~ 787 (1104)
|.++|+ +||+|+|||||++.++.++|++|+++.+....+ ++
T Consensus 355 p~d~i~-------------------------------------~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~ 397 (722)
T 1rqg_A 355 VHEFLD-------------------------------------VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELV 397 (722)
T ss_dssp HHHHTT-------------------------------------TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTT
T ss_pred HHHHHH-------------------------------------hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH
Confidence 999998 899999999999988999999999999887544 88
Q ss_pred HHHHHHHHHH----hhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHH
Q 001303 788 NKLWNAVRFS----MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 863 (1104)
Q Consensus 788 nKl~N~~rf~----l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yi 863 (1104)
|++||++.++ ..++. +..|. ...+...|+|++++++.++..+.++|++|+|+.|++.|++|+ ++||+|+
T Consensus 398 ~~l~N~~~R~~~~~~k~~~-~~~~~----~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi 470 (722)
T 1rqg_A 398 NNLGNFVHRALTFVNRYFD-GVVPE----RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYF 470 (722)
T ss_dssp TTHHHHHHHHHHHHHHHST-TBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCC----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHH
Confidence 8888876544 33332 22221 123567899999999999999999999999999999999996 7999999
Q ss_pred HhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 864 EAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 864 e~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
+.++||....+.. .....+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 471 ~~~kpw~~~k~~~--~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 471 DHKQPWKTAKEDK--VRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp HTTCHHHHTTTCH--HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HhcCchhhcCCCH--HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCC
Confidence 9999997544221 13345667788899999999999999999999999985
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=2.1e-87 Score=817.05 Aligned_cols=489 Identities=17% Similarity=0.253 Sum_probs=414.8
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHH
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 248 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~ 248 (1104)
.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+..+++ .|+++
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~------- 82 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGITP------- 82 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-----HTSCH-------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHH-----hCCCH-------
Confidence 567899999999999999999999999999999999999999999999999999999988865 46654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccc
Q 001303 249 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 328 (1104)
Q Consensus 249 f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe 328 (1104)
.++++++.+.|+++|++||+++| ++++|+++.|.+.|+++|.+|+++|+||++.+.|+||+.|+|+|+|.+|+
T Consensus 83 -----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 83 -----EQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC
Confidence 36788899999999999999876 78899999999999999999999999999999999999999999997774
Q ss_pred ccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCce
Q 001303 329 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 408 (1104)
Q Consensus 329 ~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~i 408 (1104)
. .||.|++.
T Consensus 156 g----------------------------------------------------------------------~cp~c~~~- 164 (560)
T 3h99_A 156 G----------------------------------------------------------------------TCPKCKSP- 164 (560)
T ss_dssp E----------------------------------------------------------------------ECTTTCCS-
T ss_pred C----------------------------------------------------------------------CCCCCCCc-
Confidence 2 24554421
Q ss_pred eEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 409 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 409 pIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
++.|..|++||..+.
T Consensus 165 -------------------------------------------~~~gd~ce~cg~~~~---------------------- 179 (560)
T 3h99_A 165 -------------------------------------------DQYGDNCEVCGATYS---------------------- 179 (560)
T ss_dssp -------------------------------------------SEETTBCTTTCCBCC----------------------
T ss_pred -------------------------------------------ccccchhhhccccCC----------------------
Confidence 235777888983332
Q ss_pred eeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeeccC-C
Q 001303 489 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQL-W 566 (1104)
Q Consensus 489 ~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq~-~ 566 (1104)
+.+...|+|+|||++++++.++|||++++++++.+++++ +++ ++|+..++.+.+||+ +++|||||||+ |
T Consensus 180 ---~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~ 250 (560)
T 3h99_A 180 ---PTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWT---RSG---ALQEQVANKMQEWFESGLQQWDISRDAPY 250 (560)
T ss_dssp ---GGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHH---HTS---CSCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred ---hhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHH---HhC---CCCHHHHHHHHHHHhcCCCCCCccccCCc
Confidence 234556999999999999999999999999999999999 543 367788999999998 89999999998 9
Q ss_pred CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccc-cCCCC--
Q 001303 567 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD-- 643 (1104)
Q Consensus 567 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~-g~p~~-- 643 (1104)
||+|||.. +.+|+|||||+.+.|++.+ +|+.+
T Consensus 251 WG~~iP~~---------------------------------------------~~~viyvW~da~~~y~s~~~~~~~~~~ 285 (560)
T 3h99_A 251 FGFEIPNA---------------------------------------------PGKYFYVWLDAPIGLMGSFKNLCDKRG 285 (560)
T ss_dssp SSCBCTTC---------------------------------------------TTEEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeCCCC---------------------------------------------CCceEEeCcccchhHHHHHHHHhhccC
Confidence 99999930 1269999999999998887 57653
Q ss_pred -ChhhhhhCCcC-----cccccccccc----cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 644 -TDDLKAFYPTS-----VLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 644 -~~d~~~~~P~d-----~~~~G~Dil~----fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
..+|+.|||.| ++++|+||++ ||+++|+++|+ ..| ++|++||||++ +|+|||||+||||+|.|+
T Consensus 286 ~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~ 359 (560)
T 3h99_A 286 DSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTW 359 (560)
T ss_dssp CSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHH
T ss_pred ChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCC----CCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHH
Confidence 36899999999 9999999999 78888877664 457 99999999996 999999999999999999
Q ss_pred ccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcc-cccccchHHHHH--HHHHHHHH
Q 001303 714 INGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKL 790 (1104)
Q Consensus 714 i~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~-~di~f~~~~i~~--~r~f~nKl 790 (1104)
|+ +||+|++||||++.++.+ +|++|+++.+.. .++|+|++
T Consensus 360 i~-------------------------------------~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l 402 (560)
T 3h99_A 360 LN-------------------------------------HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKV 402 (560)
T ss_dssp HH-------------------------------------HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCC
T ss_pred HH-------------------------------------HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99 899999999999987766 899999999865 67899999
Q ss_pred HHHHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccc
Q 001303 791 WNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF 870 (1104)
Q Consensus 791 ~N~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l 870 (1104)
||++.++...+...+... . .....|+||+++|+.+++.+.++|++|+|+.|++.|++|+ ++||+|++.++||.
T Consensus 403 ~n~~~R~~~~~~~~~~~~--~---~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~ 475 (560)
T 3h99_A 403 VNLASRNAGFINKRFDGV--L---ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWV 475 (560)
T ss_dssp THHHHTTHHHHHHHSTTB--C---CSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCC--C---CCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchh
Confidence 998765544332112111 1 1235799999999999999999999999999999999996 89999999999984
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 871 AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 871 ~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
..++......+..+..+++.+|+.+++||+|||||+||+||++|+.
T Consensus 476 l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp HTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred hcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 3332111114456677889999999999999999999999999974
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=3.3e-85 Score=793.66 Aligned_cols=465 Identities=23% Similarity=0.347 Sum_probs=395.6
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++++|+|+.|+|||||.|||||++++++.|+++||+||+||+|++++|+|+||.+++..+++ .|.++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~-----~g~~~-------- 89 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK-----EGITP-------- 89 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----HTSCH--------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHH-----cCCCH--------
Confidence 45789999999999999999999999999999999999999999999999999999877643 46665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 329 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~ 329 (1104)
.++++++.+.++++|++||+++| +++.|+++.|.+.++++|.+|+++|+||++...++||+.|++++++.||+.
T Consensus 90 ----~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~ 163 (536)
T 4dlp_A 90 ----RDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEV 163 (536)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEE
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhc
Confidence 37889999999999999999988 677899999999999999999999999999999999999999999876531
Q ss_pred cccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCcee
Q 001303 330 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 409 (1104)
Q Consensus 330 ~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ip 409 (1104)
.
T Consensus 164 ~------------------------------------------------------------------------------- 164 (536)
T 4dlp_A 164 R------------------------------------------------------------------------------- 164 (536)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeee
Q 001303 410 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRG 489 (1104)
Q Consensus 410 Ii~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~ 489 (1104)
++ |
T Consensus 165 -------------------------------------------~~-------g--------------------------- 167 (536)
T 4dlp_A 165 -------------------------------------------AD-------G--------------------------- 167 (536)
T ss_dssp -------------------------------------------TT-------S---------------------------
T ss_pred -------------------------------------------CC-------C---------------------------
Confidence 01 1
Q ss_pred eecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeecc-CCC
Q 001303 490 AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQ-LWW 567 (1104)
Q Consensus 490 ~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq-~~W 567 (1104)
..|+|||++++++.++|||++++++++.+++++ ++....+.|+..++.+.+||+ +++||||||| .+|
T Consensus 168 --------~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~W 236 (536)
T 4dlp_A 168 --------VRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLY---ENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDW 236 (536)
T ss_dssp --------CEECTTSSBCEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CC
T ss_pred --------CcccCCCCcceEEeccceEEecHHHHHHHHHHH---HhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcC
Confidence 158899999999999999999999999999999 655567899999999999997 7999999998 689
Q ss_pred cccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhh
Q 001303 568 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDL 647 (1104)
Q Consensus 568 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~ 647 (1104)
|||||. + +.+|+||||||+++|++++|||.++.+|
T Consensus 237 GipiP~------~---------------------------------------~~~v~yvWfda~~~y~s~~~~~~~~~~~ 271 (536)
T 4dlp_A 237 GIPVPG------D---------------------------------------EKHVMYVWVDALTNYITALGYPDTTDER 271 (536)
T ss_dssp SCBCTT------C---------------------------------------TTSEECHHHHHHHHHHHTTTTTCTTSGG
T ss_pred CeeCCC------C---------------------------------------CCCceEEeeCCcHHHHHhcCCCCCchHH
Confidence 999992 1 2379999999999999999999988899
Q ss_pred hhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHH
Q 001303 648 KAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLH 723 (1104)
Q Consensus 648 ~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~ 723 (1104)
+.|||.|++++|+||++| |+++|+++ |..||++|++||||++ +|+|||||+||||+|.++|+
T Consensus 272 ~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-----g~~~~~~v~~hg~v~~-~G~KMSKS~GNvi~p~d~i~-------- 337 (536)
T 4dlp_A 272 WAYWPANAHIIGKDISRFHAVYWPAFLMSA-----QLPLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVE-------- 337 (536)
T ss_dssp GGGCSCSEEEEEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCEEC-------------CCHHHHHH--------
T ss_pred HhhCCcceEEeechHHHHHHHHHHHHHHHC-----CCCCCcEEEeeeeEee-CCceecccCCCCCCHHHHHH--------
Confidence 999999999999999998 88888765 4468899999999985 99999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH--HHHHHHHHHHHHHHhhhh
Q 001303 724 KRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSKL 801 (1104)
Q Consensus 724 ~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~--r~f~nKl~N~~rf~l~~~ 801 (1104)
+||+|++||||++..+.++|++|+++.+.+. +++++++||++++++..+
T Consensus 338 -----------------------------~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~ 388 (536)
T 4dlp_A 338 -----------------------------RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMI 388 (536)
T ss_dssp -----------------------------HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred -----------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888899999999998875 459999999886654432
Q ss_pred C---CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccc-cCCCccc
Q 001303 802 G---EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF-AGDNPAF 877 (1104)
Q Consensus 802 ~---~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l-~~~~~~~ 877 (1104)
. +++.|.. ..++..|+||+++|+++++.+.++|++|+|+.|++.|++|+ ++||+|++.+|||. ..++..
T Consensus 389 ~~~~~~~~p~~----~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l~~~~~~- 461 (536)
T 4dlp_A 389 AKNCEGKVPQP----GAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWALRKTDPA- 461 (536)
T ss_dssp HHHSTTBCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHH-
T ss_pred HhhcCCCCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhhcCCCHH-
Confidence 1 2344421 24678999999999999999999999999999999999996 89999999999973 322322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCC
Q 001303 878 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 917 (1104)
Q Consensus 878 ~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~ 917 (1104)
.+..+..+++.+++.+++||+|||||+||+||+.|+..
T Consensus 462 --~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 462 --RMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 44567888889999999999999999999999999863
No 12
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.7e-85 Score=793.26 Aligned_cols=469 Identities=21% Similarity=0.321 Sum_probs=400.9
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHH
Q 001303 169 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 248 (1104)
Q Consensus 169 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~ 248 (1104)
.+++.|+|++|||||||.||||||++++++|+++||+||+||+|++++||||||+||+..+++ .|+++
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~------- 76 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK-----EGIPA------- 76 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----HTSCH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----cCCCH-------
Confidence 467899999999999999999999999999999999999999999999999999999887764 46654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccc
Q 001303 249 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 328 (1104)
Q Consensus 249 f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe 328 (1104)
.+|++++.+.+++++++||+++| +++.|+|+.|.+.++++|.+|+++|+||++.+.|+|||.|+|++++.||+
T Consensus 77 -----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 77 -----AELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 36889999999999999999888 67789999999999999999999999999999999999999999987663
Q ss_pred ccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCce
Q 001303 329 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 408 (1104)
Q Consensus 329 ~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~i 408 (1104)
+
T Consensus 150 ~------------------------------------------------------------------------------- 150 (524)
T 2x1l_A 150 E------------------------------------------------------------------------------- 150 (524)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred eEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCee
Q 001303 409 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 488 (1104)
Q Consensus 409 pIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~ 488 (1104)
|+ ||
T Consensus 151 -------------g~-------------------------------------~G-------------------------- 154 (524)
T 2x1l_A 151 -------------QP-------------------------------------DG-------------------------- 154 (524)
T ss_dssp -------------CT-------------------------------------TS--------------------------
T ss_pred -------------CC-------------------------------------CC--------------------------
Confidence 00 12
Q ss_pred eeecccccccccc-cCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHh-ccCCCeeeeccC-
Q 001303 489 GAKDNEMRLGLCS-RSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL-EAIRDWCVSRQL- 565 (1104)
Q Consensus 489 ~~~~~~~~~p~c~-Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl-~~l~DWcISRq~- 565 (1104)
+.|+ |||.+++++.++|||++++++++++++.+ +++...+.|+..++.+.+|+ ++++||||||||
T Consensus 155 ---------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~---~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~ 222 (524)
T 2x1l_A 155 ---------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALY---EEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTF 222 (524)
T ss_dssp ---------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHH---HHCGGGEESHHHHHHHHHHHTTCCCCEECEESSC
T ss_pred ---------CccccccCCcceEEecCCeEeeHHHHHHHHHHHH---HhCCCeeCCHHHHHHHHHHHHcCCcccceECCCC
Confidence 2588 99999999999999999999999999998 43444588999999999999 579999999997
Q ss_pred CCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCC-
Q 001303 566 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT- 644 (1104)
Q Consensus 566 ~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~- 644 (1104)
+||+||| |. +.+|+||||||+++|++.+|||.+.
T Consensus 223 ~WG~~iP-~~--------------------------------------------~~~~~yvWfds~~~~~~~~g~p~~~~ 257 (524)
T 2x1l_A 223 DWGVPVP-DH--------------------------------------------PDHVMYVWVDALTNYLTGVGFPDTES 257 (524)
T ss_dssp CSSCEET-TE--------------------------------------------EEEEECHHHHHHTHHHHTTTTTCTTS
T ss_pred CcCccCC-CC--------------------------------------------CCCEEEEecCCchHHHHHcCCCCCch
Confidence 6999999 21 1168999999999999999999864
Q ss_pred hhhhhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCch
Q 001303 645 DDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 720 (1104)
Q Consensus 645 ~d~~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~ 720 (1104)
..|+++||.|++++|+||++| |++.++++ |..||++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 258 ~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~----- 326 (524)
T 2x1l_A 258 ESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSA-----GLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVD----- 326 (524)
T ss_dssp HHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHH-----
T ss_pred HHHHhhCCCeEEEEeechhHhHHHHHHHHHHHC-----CCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHH-----
Confidence 478999999999999999998 66666554 4568899999999996 89999999999999999998
Q ss_pred hHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHH--HHHHHHHHHHHHh
Q 001303 721 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ--WCNKLWNAVRFSM 798 (1104)
Q Consensus 721 ~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~--f~nKl~N~~rf~l 798 (1104)
+||+|++||||++.++.++|++|+.+.+.++.+ ++|+|||+..++.
T Consensus 327 --------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~ 374 (524)
T 2x1l_A 327 --------------------------------TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSL 374 (524)
T ss_dssp --------------------------------HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHH
T ss_pred --------------------------------HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999988754 8999999987654
Q ss_pred hhhC---CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhccc-ccCCC
Q 001303 799 SKLG---EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPY-FAGDN 874 (1104)
Q Consensus 799 ~~~~---~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~-l~~~~ 874 (1104)
..+. ++..|. .......|+|++++++.+++.+.++|++|+|+.|++.|++|+ ..+|+|++.+||| +..+.
T Consensus 375 ~~~~~~~~~~~~~----~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~l~~~~ 448 (524)
T 2x1l_A 375 SMVAKNLGAAVPD----PGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL--GAANRYFSAQEPWVLRKSD 448 (524)
T ss_dssp HHHHHHSTTBCCC----CCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTCC
T ss_pred HHHHHhcCCCCCC----ccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCc
Confidence 4321 222221 124568899999999999999999999999999999999997 5899999999997 43331
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCCC
Q 001303 875 -PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 917 (1104)
Q Consensus 875 -~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~~ 917 (1104)
.......+.+..+++.+++.+++||+|||||+||+||+.|+..
T Consensus 449 ~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 449 AAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 0100123345667888888999999999999999999999863
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.5e-85 Score=795.25 Aligned_cols=479 Identities=19% Similarity=0.230 Sum_probs=409.3
Q ss_pred cCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCC
Q 001303 160 SGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKL 239 (1104)
Q Consensus 160 ~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~ 239 (1104)
...|.+....++++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|+|+||.+++..+++ .|.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-----~g~ 88 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-----QGV 88 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----TTC
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----cCC
Confidence 345666655567899999999999999999999999999999999999999999999999999999887753 577
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCC
Q 001303 240 TRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLR 319 (1104)
Q Consensus 240 ~~~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~ 319 (1104)
++ .+|++++.+.++++|++||+++| ++++|+++.|.+.|+++|.+|+++|+||++...++||+.|+
T Consensus 89 ~p------------~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 154 (564)
T 3kfl_A 89 SP------------MDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE 154 (564)
T ss_dssp CH------------HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred CH------------HHHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence 65 37899999999999999999999 57789999999999999999999999999999999999999
Q ss_pred cccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEe
Q 001303 320 TAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFA 399 (1104)
Q Consensus 320 TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~ 399 (1104)
+++++.||...
T Consensus 155 ~~l~~~~~~~~--------------------------------------------------------------------- 165 (564)
T 3kfl_A 155 SFLTAQNVADG--------------------------------------------------------------------- 165 (564)
T ss_dssp EEECGGGEEEE---------------------------------------------------------------------
T ss_pred CCCCHHHhccC---------------------------------------------------------------------
Confidence 99999776420
Q ss_pred ecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHH
Q 001303 400 IHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNE 479 (1104)
Q Consensus 400 ~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~ 479 (1104)
| +.+|.. |+
T Consensus 166 -----------------------------~----------------------~~~g~~---c~----------------- 174 (564)
T 3kfl_A 166 -----------------------------V----------------------DRDGKP---CK----------------- 174 (564)
T ss_dssp -----------------------------E----------------------CTTSCE---EE-----------------
T ss_pred -----------------------------c----------------------CCCCCE---ec-----------------
Confidence 0 001111 11
Q ss_pred HHHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCC
Q 001303 480 ALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRD 558 (1104)
Q Consensus 480 ~L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~D 558 (1104)
.|.+||++++++.++|||++++++++.+++++ +++...|.|+..++++.+||+ +++|
T Consensus 175 -------------------~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~i~P~~~~~~~~~wl~~gl~D 232 (564)
T 3kfl_A 175 -------------------VSLESGHVVTWVEEENYMFRLSAFRERLLKYF---HDHPNCIVPEFRRREVIKTVEKGLFD 232 (564)
T ss_dssp -------------------EETTTSCBCEEEEEEEEEECGGGGHHHHHHHH---HHCTTSEESHHHHHHHHHHHHHCCCC
T ss_pred -------------------cccCCCCccEEEecceeEEEHHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHhCCCCC
Confidence 11257999999999999999999999999999 555567899999999999997 8999
Q ss_pred eeeec----cCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcc
Q 001303 559 WCVSR----QLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP 634 (1104)
Q Consensus 559 WcISR----q~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p 634 (1104)
||||| |++||||||. + +.+|+||||||+++|
T Consensus 233 ~~ISR~~~~~~~WGipiP~------~---------------------------------------~~~v~yVWfDa~~~y 267 (564)
T 3kfl_A 233 LSISRKRESVMNWSIPVPG------D---------------------------------------ERHCIYVWLDALFNY 267 (564)
T ss_dssp EECEEEGGGGTTCSCEETT------E---------------------------------------EEEEECHHHHHHTHH
T ss_pred ccccCcCCCCCCCCeecCC------C---------------------------------------CCCEEEEeccCcHHH
Confidence 99999 8999999992 1 227999999999999
Q ss_pred cccccC-CCCChh------h--hhhCCcCccccccccccc----HHHHHHHHHHhhcCCCCceEEEEccceeCCCCcccc
Q 001303 635 LSVLGW-PDDTDD------L--KAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMS 701 (1104)
Q Consensus 635 ~s~~g~-p~~~~d------~--~~~~P~d~~~~G~Dil~f----W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMS 701 (1104)
++++|| |+++.+ | +.|||+|++++|+||++| |+++|+++| ..||++|++|||| +.+|+|||
T Consensus 268 ~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g-----~~~~~~v~~hg~v-~~~G~KMS 341 (564)
T 3kfl_A 268 YTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE-----LPLPERLVSHGWW-TKDHKKIS 341 (564)
T ss_dssp HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTT-----CCCCSCEEEECCE-EETTEECC
T ss_pred HHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCC-----CCCCcEEEEcccE-eeCCcccc
Confidence 999998 887655 7 899999999999999998 888887754 4688999999999 69999999
Q ss_pred ccCCCccCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHH
Q 001303 702 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVV 781 (1104)
Q Consensus 702 KS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~ 781 (1104)
||+||||+|.++++ +||+|++||||++..+.++|++|+++.+.
T Consensus 342 KS~GNvV~p~d~i~-------------------------------------~~G~DalR~~ll~~~~~~~D~~fs~~~~~ 384 (564)
T 3kfl_A 342 KSLGNAFDPVEKAK-------------------------------------EFGIDALKYFLMRESNFQDDGDYSDKNMV 384 (564)
T ss_dssp TTTTCCCCHHHHHH-------------------------------------HHCHHHHHHHHHHHCCSSCCEECCHHHHH
T ss_pred ccCCCCCCHHHHHH-------------------------------------HcCcHHHHHHHHHcCCcccCCCCCHHHHH
Confidence 99999999999999 89999999999998888999999999998
Q ss_pred HHH--HHHHHHHHHHHHHhhhhC--CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 001303 782 GYR--QWCNKLWNAVRFSMSKLG--EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 857 (1104)
Q Consensus 782 ~~r--~f~nKl~N~~rf~l~~~~--~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~ 857 (1104)
+.. +++|+|||++++++..+. +++.|. ....+..|+|++++++.+++.+.++|++|+|+.|++.|++|+ .
T Consensus 385 ~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~----~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~ 458 (564)
T 3kfl_A 385 ARLNGELADTLGNLVSRCVAPKINVNGMWPE----PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--R 458 (564)
T ss_dssp HHHHHTTTTTHHHHHHHHHCTTTSTTSBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--H
Confidence 754 499999999988776543 122332 124678999999999999999999999999999999999997 5
Q ss_pred HhHHHHHhhccc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 858 FCDVFIEAIKPY-FAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 858 ~~n~Yie~~K~~-l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
+||+|++.++|| +..++.. ....+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 459 ~~n~Y~~~~kpW~l~~~~~~---~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 459 SLNAYVTENAPWKLVKMDTA---RLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515 (564)
T ss_dssp HHHHHHHHHCHHHHTTTCHH---HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCChhhhcCCHH---HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCC
Confidence 899999999997 4443332 4456788899999999999999999999999999975
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=9.9e-84 Score=775.74 Aligned_cols=457 Identities=23% Similarity=0.311 Sum_probs=392.8
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHH
Q 001303 171 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 250 (1104)
Q Consensus 171 k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~ 250 (1104)
+++|+|+.|||||||.||||||++++++|+++||+||+||+|++++|||+||+|++..+++ .|+++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~--------- 67 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-----AGEDP--------- 67 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-----HTSCH---------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-----cCCCH---------
Confidence 4689999999999999999999999999999999999999999999999999999877754 36664
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCccccccccccc
Q 001303 251 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 330 (1104)
Q Consensus 251 ~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~~ 330 (1104)
.+|++++.+.|+++|++||+++| .+++|+|+.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.++.
T Consensus 68 ---~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~-- 140 (500)
T 2d5b_A 68 ---KAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV-- 140 (500)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB--
T ss_pred ---HHHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc--
Confidence 36899999999999999999888 57889999999999999999999999999999999999999988863220
Q ss_pred ccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeE
Q 001303 331 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 410 (1104)
Q Consensus 331 ~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipI 410 (1104)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 411 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 411 i~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeec--cC-C
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--QL-W 566 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--q~-~ 566 (1104)
.++|+|||.+++++.++|||++++++++.+++++ +++...+.|+..++.+.+|++ +++|||||| |+ +
T Consensus 141 ------~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~ 211 (500)
T 2d5b_A 141 ------EGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYI---QENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVP 211 (500)
T ss_dssp ------TTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHH---HTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCC
T ss_pred ------CCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHH---HhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccccc
Confidence 0249999999999999999999999999999999 554455789999999999995 689999999 65 7
Q ss_pred CcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChh
Q 001303 567 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 646 (1104)
Q Consensus 567 WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d 646 (1104)
||+|||.. +.+|+||||||++.|++.+|||.+..
T Consensus 212 WG~piP~~---------------------------------------------~~~v~~vWfds~~~y~~~~g~~~~~~- 245 (500)
T 2d5b_A 212 WGIPLPWD---------------------------------------------ENHVTFVWFDALLNYVSALDYPEGEA- 245 (500)
T ss_dssp SSCEETTE---------------------------------------------EEEEECHHHHHHTHHHHTTTTTTCHH-
T ss_pred CccccCCC---------------------------------------------CCCeeEEccccchhhHHHcCCCCCch-
Confidence 99999930 12699999999999999999997643
Q ss_pred hhhhCCcCcccccccccc----cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhH
Q 001303 647 LKAFYPTSVLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 722 (1104)
Q Consensus 647 ~~~~~P~d~~~~G~Dil~----fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l 722 (1104)
++.+||.|++++|+||++ ||++++.++ |..||++|++||||++.+|+|||||+||||+|.|+|+
T Consensus 246 ~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~-----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~------- 313 (500)
T 2d5b_A 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAA-----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE------- 313 (500)
T ss_dssp HHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-------
T ss_pred HHHcCCCeEEEEeechhhhHHHHHHHHHHHc-----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH-------
Confidence 888999999999999999 677777654 4568999999999998899999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHHHHHHHHHHHHhhh
Q 001303 723 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMSK 800 (1104)
Q Consensus 723 ~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~nKl~N~~rf~l~~ 800 (1104)
+||+|+|||||++.++.++|++|+.+.+.+.. +++|++||+..++...
T Consensus 314 ------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~ 363 (500)
T 2d5b_A 314 ------------------------------KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAM 363 (500)
T ss_dssp ------------------------------HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred ------------------------------hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999997888999999999987743 5899999987654432
Q ss_pred hCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCC-CcccHH
Q 001303 801 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFAS 879 (1104)
Q Consensus 801 ~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~-~~~~~~ 879 (1104)
+...+.. ... . ..++|++++++.+++.+.++|++|+|+.|++.|++|+ ..+|+|++.+|||.... +..
T Consensus 364 ~~~~~~~--~~~--~--~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~~~~--- 432 (500)
T 2d5b_A 364 LFRFAEG--RIP--E--PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKKEPE--- 432 (500)
T ss_dssp HHHHSTT--BCC--C--CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHH---
T ss_pred HHHhcCC--CCC--c--hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccCcHH---
Confidence 2111110 011 0 1148999999999999999999999999999999997 68999999999984322 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 880 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 880 ~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
..+.+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 433 ~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~ 469 (500)
T 2d5b_A 433 EARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCC
Confidence 3345677888888999999999999999999999986
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.3e-81 Score=754.35 Aligned_cols=456 Identities=21% Similarity=0.293 Sum_probs=360.9
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++++|+|+.|||||||.||||||++++++|+++||+||+||+|++++||||||+||+..+++ +|+++
T Consensus 3 ~~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-----~g~~~-------- 69 (497)
T 2csx_A 3 LMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-----LGISP-------- 69 (497)
T ss_dssp SSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-----SSSCH--------
T ss_pred CCCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-----cCCCH--------
Confidence 35789999999999999999999999999999999999999999999999999998877753 47664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcccccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 329 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~TaLsd~EVe~ 329 (1104)
.++++++.+.|+++|++||+++| .+++|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|+.
T Consensus 70 ----~~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~- 142 (497)
T 2csx_A 70 ----KELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA- 142 (497)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------
T ss_pred ----HHHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc-
Confidence 36789999999999999999777 57889999999999999999999999999999999999999988874321
Q ss_pred cccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCcee
Q 001303 330 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 409 (1104)
Q Consensus 330 ~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ip 409 (1104)
T Consensus 143 -------------------------------------------------------------------------------- 142 (497)
T 2csx_A 143 -------------------------------------------------------------------------------- 142 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeee
Q 001303 410 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRG 489 (1104)
Q Consensus 410 Ii~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~ 489 (1104)
+
T Consensus 143 --------~----------------------------------------------------------------------- 143 (497)
T 2csx_A 143 --------E----------------------------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred eecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhc-cCCCeeeec--cC-
Q 001303 490 AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--QL- 565 (1104)
Q Consensus 490 ~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--q~- 565 (1104)
.+.|+|||.+++++.++|||++++++++++++++ +++...+.|+..++.+.+|++ +++|||||| |+
T Consensus 144 -------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~ 213 (497)
T 2csx_A 144 -------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELY---EKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRV 213 (497)
T ss_dssp ---------------------CCEEEEECTTSSHHHHHHHH---HHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTC
T ss_pred -------CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHH---HhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCC
Confidence 0458999999999999999999999999999998 544455789999999999996 799999999 65
Q ss_pred CCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCCh
Q 001303 566 WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD 645 (1104)
Q Consensus 566 ~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~ 645 (1104)
+||+|||.. ..+++||||||++.|.+.+ +++ .
T Consensus 214 ~WG~~iP~~---------------------------------------------~~~~i~vW~ds~~~~~s~~--~~~-~ 245 (497)
T 2csx_A 214 KWGIPVPFD---------------------------------------------PEHTIYVWFDALFNYISAL--EDK-V 245 (497)
T ss_dssp CSSEEETTE---------------------------------------------EEEEECSHHHHHTHHHHTT--TTT-H
T ss_pred CCceecCCC---------------------------------------------CCceEEEecccchhhcccC--CCc-c
Confidence 799999931 1268999999999888877 222 1
Q ss_pred hhhhhCCcCcccccccccc----cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchh
Q 001303 646 DLKAFYPTSVLETGHDILF----FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 721 (1104)
Q Consensus 646 d~~~~~P~d~~~~G~Dil~----fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~ 721 (1104)
+ .+||.|++++|+||++ ||++.+.++ |..||++|++||||++ +|+|||||+||+|+|.|+++
T Consensus 246 ~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~-----g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~------ 311 (497)
T 2csx_A 246 E--IYWPADLHLVGKDILRFHTVYWPAFLMSL-----GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQ------ 311 (497)
T ss_dssp H--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHH------
T ss_pred h--hhCCceEEEeecchhHhHHHHHHHHHHHc-----CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHH------
Confidence 1 5679999999999999 677766544 5578999999999996 99999999999999999998
Q ss_pred HHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHH--HHHHHHHHHHHHHhh
Q 001303 722 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRFSMS 799 (1104)
Q Consensus 722 l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r--~f~nKl~N~~rf~l~ 799 (1104)
+||+|++||||++.++.++|++|+.+.+.+.. .+++++||+..++..
T Consensus 312 -------------------------------~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~ 360 (497)
T 2csx_A 312 -------------------------------EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVN 360 (497)
T ss_dssp -------------------------------HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred -------------------------------HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888999999999998753 478999998766554
Q ss_pred hhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHH
Q 001303 800 KLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFAS 879 (1104)
Q Consensus 800 ~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~ 879 (1104)
.+...+.. .. . ...|+|++++++.+++.+.++|++|+|+.|++.|++|+ ..+|+|++.+|||....+.. ..
T Consensus 361 ~~~~~~~~--~~---~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~-~~ 431 (497)
T 2csx_A 361 MAHKFLGG--EV---S-GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERK-KE 431 (497)
T ss_dssp HHHHHSTT--CB---C-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSC-HH
T ss_pred HHHHhcCC--CC---C-chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccccc-HH
Confidence 33211110 01 1 45689999999999999999999999999999999997 68999999999984322111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHCCC
Q 001303 880 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 916 (1104)
Q Consensus 880 ~r~~a~~~L~~~l~~~l~LL~PfmPfitEeLwq~L~~ 916 (1104)
..+.+..+++.+++.+++||+|||||+|||||+.|+.
T Consensus 432 ~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~ 468 (497)
T 2csx_A 432 ELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGE 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCC
Confidence 3345677888889999999999999999999999986
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.9e-42 Score=405.64 Aligned_cols=346 Identities=20% Similarity=0.264 Sum_probs=256.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
+..+....|+|+|.+|||||+++++.|+++||+||+||+|.|++|+|++|.+|+..++ +.|.+
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~-----~~g~~------------ 87 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG-----ENKES------------ 87 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH-----HTTSC------------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH-----HcCCC------------
Confidence 4455556789999999999999999999999999999999999999999999876664 35654
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEc-cEeeeecCCCCcccccccccccc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEVDYVD 331 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~-~~~v~wcp~~~TaLsd~EVe~~~ 331 (1104)
|++|++++.+.+.+++++||++.||..+..| +|...++++|.+|+++|++|++ ...|+||+.+-. .|
T Consensus 88 ~~e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~-------~y-- 155 (462)
T 3tqo_A 88 PAALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK-------DY-- 155 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT-------TT--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc-------cc--
Confidence 5789999999999999999999998776665 8999999999999999999999 789999997531 11
Q ss_pred cCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEE
Q 001303 332 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 411 (1104)
Q Consensus 332 ~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi 411 (1104)
..|.|+..
T Consensus 156 ------------------------------------------------------------g~Ls~~~~------------ 163 (462)
T 3tqo_A 156 ------------------------------------------------------------GKLSHRHL------------ 163 (462)
T ss_dssp ------------------------------------------------------------TTTTTCSC------------
T ss_pred ------------------------------------------------------------ccccCCCh------------
Confidence 11111100
Q ss_pred ecCccccCCCCCCceecC-CCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 412 CDAILVDPKFGTGAVKIT-PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 412 ~d~~~V~~~~GTG~V~~~-Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
-++..|+.+ ... --.+|.||.+++..
T Consensus 164 -----~~~~~g~r~-~~~~~K~~p~DF~LWK~~----------------------------------------------- 190 (462)
T 3tqo_A 164 -----DELQAGARV-EVSDSKRDPLDFVLWKKA----------------------------------------------- 190 (462)
T ss_dssp -----C-------------CCSSTTCEEEEEEC-----------------------------------------------
T ss_pred -----HHhhccCcc-ccccccCCccccceeeec-----------------------------------------------
Confidence 001111110 000 01223333222100
Q ss_pred ecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCCccc
Q 001303 491 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 570 (1104)
Q Consensus 491 ~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~p 570 (1104)
+.++. -|- -.||--
T Consensus 191 -------------------------------------------k~~ep-------------------~W~----spwG~G 204 (462)
T 3tqo_A 191 -------------------------------------------KPGEP-------------------KWD----SPWGEG 204 (462)
T ss_dssp -------------------------------------------CTTSC-------------------CBC----CTTCSE
T ss_pred -------------------------------------------CCCCC-------------------ccc----CCCCCC
Confidence 00110 121 247888
Q ss_pred ceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhhhhh
Q 001303 571 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAF 650 (1104)
Q Consensus 571 IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~~~~ 650 (1104)
-|.|+++ | .| +....+|
T Consensus 205 rPGWHiE-c---------------------sa------------------------------m~~~~lG----------- 221 (462)
T 3tqo_A 205 RPGWHIE-C---------------------SA------------------------------MSSSILG----------- 221 (462)
T ss_dssp EECHHHH-H---------------------HH------------------------------HHHHHHC-----------
T ss_pred CCCCcee-h---------------------HH------------------------------HHHHhcC-----------
Confidence 8888753 1 00 0001122
Q ss_pred CCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCC
Q 001303 651 YPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 730 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~ 730 (1104)
-+.|++.+|.|++|+|+.++++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 222 ~~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~--------------- 285 (462)
T 3tqo_A 222 QPFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK--------------- 285 (462)
T ss_dssp SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH---------------
T ss_pred CCeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh---------------
Confidence 256899999999999999999999999998 9999999988888999999999999999999998
Q ss_pred CChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCC
Q 001303 731 LDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK 810 (1104)
Q Consensus 731 l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~~ 810 (1104)
+||+|++||||++. ...++++|+.+.+.++++++++|||+++++.. ..+
T Consensus 286 ----------------------~~g~dalR~~lls~-~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~-----~~~--- 334 (462)
T 3tqo_A 286 ----------------------ESDVEVLRYFLLSG-HYRNPLSYSKENLENGRLALERFYLALRGLPV-----VNH--- 334 (462)
T ss_dssp ----------------------HSCHHHHHHHHHHS-CTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC-----------
T ss_pred ----------------------hcChHHhhhhhccC-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhh-----ccc---
Confidence 89999999999984 67889999999999999999999999976421 000
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhHhHHHHH
Q 001303 811 LHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 864 (1104)
Q Consensus 811 ~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~~~~~~n~Yie 864 (1104)
+ .+..+...+.++|+ .|+...|+..|++++ ...|.++.
T Consensus 335 ---------~-----~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~--~~~n~~~~ 373 (462)
T 3tqo_A 335 ---------E-----KTSSYTDRFYEAMDDDFNTPIAFALLFEMV--REINRFRD 373 (462)
T ss_dssp -----------------CHHHHHHHHHHTBTCCHHHHHHHHHHHH--HHHHHHHH
T ss_pred ---------h-----hHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHhhhhc
Confidence 0 13456678888996 699999999999986 45566543
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.4e-40 Score=386.62 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=112.7
Q ss_pred CcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEc-cceeCCCCccccccCCCccCccccccccCchhHHHHhhcCC
Q 001303 652 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 730 (1104)
Q Consensus 652 P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~ 730 (1104)
|.|++++|+||+|||...+++++..++|..||.++++| |+|. .+|+|||||+||+|+|.++++
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~--------------- 307 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRA--------------- 307 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHH---------------
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhh---------------
Confidence 89999999999999999999999988888899999999 8987 599999999999999999998
Q ss_pred CChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCC
Q 001303 731 LDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPL 809 (1104)
Q Consensus 731 l~~~e~~~a~~~~~~~fp~~i~~-yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~p~~ 809 (1104)
+ ||+|++||||++ ++..+|++|+.+.+.+.++++++|||+++++ ++ +
T Consensus 308 ----------------------~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~-----~~--~-- 355 (414)
T 3c8z_A 308 ----------------------QGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANARLARWRSATALP-----EA--P-- 355 (414)
T ss_dssp ----------------------TTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS-----CB--S--
T ss_pred ----------------------ccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc-----cc--h--
Confidence 7 999999999999 7889999999999999999999999987532 10 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001303 810 KLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 854 (1104)
Q Consensus 810 ~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~ 854 (1104)
.++.++..+.++| ++|+|+.|+..|++|+
T Consensus 356 ----------------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~ 385 (414)
T 3c8z_A 356 ----------------DATDVIARVRQYLADDLDTPKALAALDGWC 385 (414)
T ss_dssp ----------------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1256788999999 7999999999999996
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=9.8e-41 Score=392.56 Aligned_cols=350 Identities=16% Similarity=0.189 Sum_probs=224.7
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc---------C-CCcCChHHHHHHHHHHHHcCCCc
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG---------M-DHAGIATQVVVEKKLMRERKLTR 241 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G---------~-D~~Glp~q~~vek~l~~~~g~~~ 241 (1104)
-.+|++ +|+|+|.+|||||+++++.|+++||+||+||+|.|++| + |+||.+|+..+++ +|++
T Consensus 43 v~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~-----~g~~- 114 (501)
T 3sp1_A 43 VKVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTARE-----KGLT- 114 (501)
T ss_dssp EEEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC------------------------CC-
T ss_pred ceEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHH-----cCCC-
Confidence 345555 56667999999999999999999999999999999954 4 7788888766643 4665
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEEccEeeeecCCCCcc
Q 001303 242 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 321 (1104)
Q Consensus 242 ~~~~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~Ta 321 (1104)
+++|++++.+.+.++|++||++.||. .+.+++|...++++|.+|+++|+||++...|+||+.+-.
T Consensus 115 -----------~~e~a~~~~~~f~~d~~~Lgi~~d~~---~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~- 179 (501)
T 3sp1_A 115 -----------VYEISEFFTEAFFNDCRKLNIVYPDK---VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFK- 179 (501)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTTCCCCSE---EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCT-
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCCCCc---ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccC-
Confidence 46899999999999999999999974 356899999999999999999999999999999987410
Q ss_pred cccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeec
Q 001303 322 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 401 (1104)
Q Consensus 322 Lsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~ 401 (1104)
. |..|.|..+.
T Consensus 180 ------~--------------------------------------------------------------yG~ls~~~~~- 190 (501)
T 3sp1_A 180 ------S--------------------------------------------------------------YGEMAGIDLI- 190 (501)
T ss_dssp ------T--------------------------------------------------------------TTTTTC-----
T ss_pred ------C--------------------------------------------------------------ccccCCCChh-
Confidence 1 1111111000
Q ss_pred CCCCCceeEEecCccccCCCCCCceecCC-CCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHH
Q 001303 402 PFNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 480 (1104)
Q Consensus 402 P~~~~~ipIi~d~~~V~~~~GTG~V~~~P-ahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~ 480 (1104)
+ ++..|.. |-+.+ -.+|.||.+
T Consensus 191 -----------~----~~~~g~r-~~~~~~K~~p~Df~l----------------------------------------- 213 (501)
T 3sp1_A 191 -----------D----KDMTLPR-VDVDKFKRNKTDFVL----------------------------------------- 213 (501)
T ss_dssp -----------------------------CCSSTTCEEE-----------------------------------------
T ss_pred -----------h----hhccCCc-cCcccccCCchhhHh-----------------------------------------
Confidence 0 0000000 00000 011111110
Q ss_pred HHHcCCeeeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCee
Q 001303 481 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 560 (1104)
Q Consensus 481 L~~~g~l~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 560 (1104)
|.|..... ..-.-|
T Consensus 214 -----------------------------------------------------------Wk~~p~~~------~~~~~W- 227 (501)
T 3sp1_A 214 -----------------------------------------------------------WFTNSKFK------DQEMKW- 227 (501)
T ss_dssp -----------------------------------------------------------EEECCC-----------CCB-
T ss_pred -----------------------------------------------------------cCCCCCCC------CCCcee-
Confidence 11100000 000012
Q ss_pred eeccCCCcccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccC
Q 001303 561 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 640 (1104)
Q Consensus 561 ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~ 640 (1104)
.--||.--|.|+++ |.
T Consensus 228 ---~spwG~GrPGWhiE-cs------------------------------------------------------------ 243 (501)
T 3sp1_A 228 ---DSPWGFGYPSWHLE-CA------------------------------------------------------------ 243 (501)
T ss_dssp ---CCTTCSEEECHHHH-HH------------------------------------------------------------
T ss_pred ---cCCCCCCCCCchHH-HH------------------------------------------------------------
Confidence 12377777777642 10
Q ss_pred CCCChhhhhhC--CcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEc-cceeCCCCccccccCCCccCcccccccc
Q 001303 641 PDDTDDLKAFY--PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGI 717 (1104)
Q Consensus 641 p~~~~d~~~~~--P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKS~GNvIdP~dii~g~ 717 (1104)
.-...++ |.|++.+|.|++|+|....++++.+++|+ ||.++++| |||. .+|+|||||+||+|+|.++++
T Consensus 244 ----am~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~-- 315 (501)
T 3sp1_A 244 ----AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLED-- 315 (501)
T ss_dssp ----HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHH--
T ss_pred ----HHHHHHcCCCceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHh--
Confidence 0011222 45999999999999999999999999886 89999999 8987 799999999999999999998
Q ss_pred CchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCC-CCchHHHHHHHhccCcccccccchHHHHHHHHH----HHHHHH
Q 001303 718 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQW----CNKLWN 792 (1104)
Q Consensus 718 ~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~-yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f----~nKl~N 792 (1104)
+ ||+|++||||++. ....|++|+.+.+.+.+++ +++|||
T Consensus 316 -----------------------------------~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~ 359 (501)
T 3sp1_A 316 -----------------------------------QNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSY 359 (501)
T ss_dssp -----------------------------------TTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------cCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHH
Confidence 7 9999999999986 7889999999999999999 999999
Q ss_pred HHHHHhhhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 001303 793 AVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 854 (1104)
Q Consensus 793 ~~rf~l~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e-~~~f~~a~~~i~~f~ 854 (1104)
+++.+............ . ... ...+..+...+.++|+ .|+...|+..|++++
T Consensus 360 ~~~~~~~~~~~~~~~~~-~---~~~------~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~ 412 (501)
T 3sp1_A 360 FYESLDPVDLNTLNKDL-K---NFG------FSVEKEYYDSFVEKISFDLNVAQGLALLWEII 412 (501)
T ss_dssp HHHTCCHHHHHHHHSCT-T---SCS------SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccc-c---chh------hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 98754211110000000 0 000 1234566778889996 699999999999986
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.4e-38 Score=376.70 Aligned_cols=348 Identities=17% Similarity=0.195 Sum_probs=250.9
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHH
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 249 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f 249 (1104)
++..++++.|-|| |.+|||||+++++.|+++||+|+.||+|.++.|+|++|.+++..++ +.|.+
T Consensus 21 ~~v~~yv~gPt~y--~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~-----~~g~~--------- 84 (461)
T 1li5_A 21 GEVGMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRAN-----ENGES--------- 84 (461)
T ss_dssp TEEEEEECCCBSS--SCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHH-----HTTCC---------
T ss_pred CCeeEEEcCCcCC--CCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHH-----HcCCC---------
Confidence 3446777765555 9999999999999999999999999999999999999977655443 45765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-ccCCccccCChhhHHHHHHHHHHHHhcCcEEEc-cEeeeecCCCCcccccccc
Q 001303 250 VSEVWKWKDEYGGTILRQQRRLGASL-DWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRD-LRLVNWDCVLRTAISDIEV 327 (1104)
Q Consensus 250 ~~~~~~~~~~~~~~i~~ql~~lG~s~-DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~-~~~v~wcp~~~TaLsd~EV 327 (1104)
++++++.+.+.+++++++||+++ |+ +..|++ |...++++|.+|.++|++|.+ ...|+||+.+-.
T Consensus 85 ---~~~~~~~~~~~f~~~~~~LgI~~~d~--~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~------- 150 (461)
T 1li5_A 85 ---FVAMVDRMIAEMHKDFDALNILRPDM--EPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP------- 150 (461)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTCCCCSB--CCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCT-------
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCCCcc--cccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEeccccc-------
Confidence 45889999999999999999998 63 233443 889999999999999999998 888888875310
Q ss_pred cccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCc
Q 001303 328 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRK 407 (1104)
Q Consensus 328 e~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ 407 (1104)
.| . +++|+.
T Consensus 151 ~y--------------------------------------------------------------g---------~lsg~~ 159 (461)
T 1li5_A 151 TY--------------------------------------------------------------G---------VLSRQD 159 (461)
T ss_dssp TT--------------------------------------------------------------T---------TTTTC-
T ss_pred cc--------------------------------------------------------------c---------cccCCC
Confidence 01 0 111111
Q ss_pred eeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchhhHHHHHHHHHHHcCCe
Q 001303 408 IPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLY 487 (1104)
Q Consensus 408 ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l 487 (1104)
+ .++..|+.+. + +. ...+
T Consensus 160 ~--------~~l~~g~rv~---~---------------------~~---~k~~--------------------------- 177 (461)
T 1li5_A 160 L--------DQLQAGARVD---V---------------------VD---DKRN--------------------------- 177 (461)
T ss_dssp --------------------------------------------------CCS---------------------------
T ss_pred H--------HHhhcCCccc---c---------------------hh---cccC---------------------------
Confidence 0 0111111000 0 00 0000
Q ss_pred eeeecccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCceEEeccccHHHHHHHhccCCCeeeeccCCC
Q 001303 488 RGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWW 567 (1104)
Q Consensus 488 ~~~~~~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~W 567 (1104)
| .+-+ -|.+. ++-.+|+...|
T Consensus 178 ----------p-----~Df~-------------------------------lwk~~-------------~~g~~~w~s~W 198 (461)
T 1li5_A 178 ----------P-----MDFV-------------------------------LWKMS-------------KEGEPSWPSPW 198 (461)
T ss_dssp ----------T-----TCEE-------------------------------EEEEC-------------CTTSCCBCCTT
T ss_pred ----------c-----cceE-------------------------------EEccC-------------CCCCCcccCCC
Confidence 0 0000 01000 00012345579
Q ss_pred cccceEEEEccCcchhhccCCCCCceEEecCHHHHHHHHhhhcCCCCcccccCCCceeeEeccCCcccccccCCCCChhh
Q 001303 568 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDL 647 (1104)
Q Consensus 568 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~d~dvlDtWFdS~l~p~s~~g~p~~~~d~ 647 (1104)
|.+.|.|+.. |. +| ....+|
T Consensus 199 G~g~PgWhie-cs------------------------------------------am---------~~~~lg-------- 218 (461)
T 1li5_A 199 GAGRPGWHIE-CS------------------------------------------AM---------NCKQLG-------- 218 (461)
T ss_dssp CSEEECSSHH-HH------------------------------------------HH---------HHHHHC--------
T ss_pred CCcCCCccch-hH------------------------------------------HH---------HHHHhC--------
Confidence 9999987642 10 00 000112
Q ss_pred hhhCCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEc-cceeCCCCccccccCCCccCccccccccCchhHHHHh
Q 001303 648 KAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 726 (1104)
Q Consensus 648 ~~~~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~H-g~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l 726 (1104)
.|.|++++|+||+|||....++++..++|. ||.++++| |||. .+|+|||||+||+|+|.|+++
T Consensus 219 ---~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~----------- 282 (461)
T 1li5_A 219 ---NHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLK----------- 282 (461)
T ss_dssp ---SSEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHT-----------
T ss_pred ---CCceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhh-----------
Confidence 267899999999999999999988888786 77888887 9998 589999999999999999998
Q ss_pred hcCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 001303 727 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFV 806 (1104)
Q Consensus 727 ~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~r~f~nKl~N~~rf~l~~~~~~~~ 806 (1104)
+||+|++||||++ ++..+|++|+.+.+.+.+++++++||+++++ .. .
T Consensus 283 --------------------------~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~--~ 329 (461)
T 1li5_A 283 --------------------------YYDAETVRYFLMS-GHYRSQLNYSEENLKQARAALERLYTALRGT----DK--T 329 (461)
T ss_dssp --------------------------TSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT--T
T ss_pred --------------------------hCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc--C
Confidence 8999999999998 6788999999999999999999999998643 11 0
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhHhHHHHHh
Q 001303 807 PPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEA 865 (1104)
Q Consensus 807 p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yie~ 865 (1104)
.. . | .++.+...+.++| ++|+++.|+..|++|+ ..+|.|++.
T Consensus 330 ----~~-----~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~--~~~N~~~~~ 372 (461)
T 1li5_A 330 ----VA-----P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMA--REVNRLKAE 372 (461)
T ss_dssp ----SC-----C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred ----CC-----H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHH--HHHHHHHhc
Confidence 00 1 2 3667888999999 9999999999999996 567999864
No 20
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=1.3e-36 Score=305.32 Aligned_cols=139 Identities=42% Similarity=0.740 Sum_probs=133.0
Q ss_pred ceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccccccccCcEeecCCCCCceeEEecCccccCCCCCCceecC
Q 001303 350 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKIT 429 (1104)
Q Consensus 350 g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~ry~~l~G~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~ 429 (1104)
|.+++++|++ +++.+|+|||||||||+|++||||||+++||++|+|+++.||++++.+||+.+++ |++++|||+||+|
T Consensus 4 ~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~~~~ipI~~~~~-V~~~~GTG~V~~~ 81 (147)
T 1wka_A 4 GKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVT 81 (147)
T ss_dssp CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTSSCEEEEEECTT-CCTTSTTSEEEEC
T ss_pred ceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCCCCeeEEEEeCc-cccCCCCCcEEEc
Confidence 6789999999 6668999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred CCCCcchHHHHHHhCCccceecCCCCccccCCCCC----CCCCchhhHHHHHHHHHHHcCCeeeeecc
Q 001303 430 PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE----FEGMPRFKAREAVNEALKKKGLYRGAKDN 493 (1104)
Q Consensus 430 Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~----~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~ 493 (1104)
||||++||++|++|||+++++||++|+| ++| + |.||++++||+.|++.|+++|++.+.++|
T Consensus 82 Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~-~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 82 PAHDPLDYEIGERHGLKPVSVINLEGRM--EGE-RVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp TTTCHHHHHHHHHHTCCCCCSBCTTSBB--CST-TSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCHHHHHHHHHcCCCcceEECCCCEE--cCC-CcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999999999999999999999 777 6 99999999999999999999999888765
No 21
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=3.3e-33 Score=292.02 Aligned_cols=140 Identities=24% Similarity=0.364 Sum_probs=127.2
Q ss_pred eeEeeecCCC------cceEEEeeccccccccCceEEecCC---------cccc-----------------------ccc
Q 001303 353 TSFAYPLEGG------LGEIVVATTRVETMLGDTAIAIHPE---------DARY-----------------------SHL 394 (1104)
Q Consensus 353 ~~~~~~l~~~------~~~l~vaTTrPeTl~g~~aiaV~P~---------d~ry-----------------------~~l 394 (1104)
.+++|++.+. +.+|+|||||||||+|++||||||+ +++| .+|
T Consensus 6 i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l 85 (186)
T 1wny_A 6 VYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKAL 85 (186)
T ss_dssp EEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEEHHHH
T ss_pred EEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEEcccc
Confidence 4688888764 5789999999999999999999999 6667 458
Q ss_pred cCcEeecCCC---CCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCCCCccccCCCCCCCCCchh
Q 001303 395 HGKFAIHPFN---GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRF 471 (1104)
Q Consensus 395 ~G~~~~~P~~---~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~~G~~~~~~g~~~~Gl~~~ 471 (1104)
.|+++.||+. ++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++||++|+|+++ | |.||.++
T Consensus 86 ~g~~~~~P~~~~~~~~ipi~~~~~-V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~--~~Gl~v~ 161 (186)
T 1wny_A 86 EGLPYTPPYPQALEKGYFVVLADY-VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFR 161 (186)
T ss_dssp TTCBBCCSSCCCCSSCCBEEECTT-CCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T--CTTCBHH
T ss_pred cCcEEECCccccCCCEEEEEEeCc-CcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C--CCCcCHH
Confidence 9999999996 89999999996 99999999999999999999999999999999999999999976 5 9999999
Q ss_pred hHHHHHHHHHHHcCCeeeeeccccc
Q 001303 472 KAREAVNEALKKKGLYRGAKDNEMR 496 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~~~~~~ 496 (1104)
+||+.|++.|+++|++.+.+++.|+
T Consensus 162 ~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 162 EANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999999999999998874
No 22
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=1.4e-30 Score=274.36 Aligned_cols=139 Identities=25% Similarity=0.421 Sum_probs=123.2
Q ss_pred ceEeeEeeecCCCcceEEEeeccccccccCceEEecCCccc-------------cc--------------------cccC
Q 001303 350 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR-------------YS--------------------HLHG 396 (1104)
Q Consensus 350 g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~r-------------y~--------------------~l~G 396 (1104)
|.-.+++|++.+.+.+|+|||||||||+|++||||||++++ |. .|.|
T Consensus 10 ~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~G 89 (196)
T 2ajg_A 10 GEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTG 89 (196)
T ss_dssp -CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEEE
T ss_pred CceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEcC
Confidence 44567899998777899999999999999999999999852 11 2779
Q ss_pred cEeecCCCCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecC---------CCCccccC-----CC
Q 001303 397 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFT---------DDGKINSN-----GG 462 (1104)
Q Consensus 397 ~~~~~P~~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid---------~~G~~~~~-----~g 462 (1104)
+++.|||+++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|+ ++|.++++ +|
T Consensus 90 ~~~~~P~~~~~ipV~~ad~-V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~ 168 (196)
T 2ajg_A 90 FKAVHPLTGEEIPVWAANF-VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG 168 (196)
T ss_dssp EEEECTTTCCEEEEEEETT-CCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSG
T ss_pred CEEECCCCCCeeEEEEeCC-CccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCc
Confidence 9999999999999999996 999999999999999999999999999999999996 46666654 35
Q ss_pred CCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 463 LEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 463 ~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
+|.||.+++||+.|++.|+++|++.+.
T Consensus 169 -~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 169 -EFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp -GGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred -ccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 799999999999999999999998653
No 23
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=4.1e-30 Score=274.26 Aligned_cols=128 Identities=30% Similarity=0.478 Sum_probs=112.3
Q ss_pred ceEEEeeccccccccCceEEecCCccc----------c--------------------------c----cccCcEeecCC
Q 001303 364 GEIVVATTRVETMLGDTAIAIHPEDAR----------Y--------------------------S----HLHGKFAIHPF 403 (1104)
Q Consensus 364 ~~l~vaTTrPeTl~g~~aiaV~P~d~r----------y--------------------------~----~l~G~~~~~P~ 403 (1104)
.+|+|||||||||+|++||||||+++. | . .|.|+++.|||
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl 117 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPA 117 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTT
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCC
Confidence 689999999999999999999999752 1 0 24689999999
Q ss_pred CCCceeEEecCccccCCCCCCceecCCCCCcchHHHHHHhCCccceecCC-------CCcccc-----CCCCCCCCCchh
Q 001303 404 NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD-------DGKINS-----NGGLEFEGMPRF 471 (1104)
Q Consensus 404 ~~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~iid~-------~G~~~~-----~~g~~~~Gl~~~ 471 (1104)
+++.+||+.++| |++++|||+||+|||||++||++|++||||++++||+ +|.+++ ++| .|.||+++
T Consensus 118 ~~~~iPI~~ady-V~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~-~~~Gl~~~ 195 (219)
T 3o0a_A 118 NGEKIPVWSANY-VLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSD-GFDGLDSE 195 (219)
T ss_dssp TCCEEEEEEETT-SCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCG-GGTTCBHH
T ss_pred CCCeeeEEEecc-cccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCC-CCCCCCHH
Confidence 999999999996 9999999999999999999999999999999999987 344443 357 89999999
Q ss_pred hHHHHHHHHHHHcCCeeeeecc
Q 001303 472 KAREAVNEALKKKGLYRGAKDN 493 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~~~ 493 (1104)
+||++|++.|+++|++.+..+|
T Consensus 196 eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 196 TAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp HHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHHHHHHHCCCeeeeeee
Confidence 9999999999999999887665
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.95 E-value=3e-26 Score=270.07 Aligned_cols=200 Identities=17% Similarity=0.108 Sum_probs=132.8
Q ss_pred cccccccccccHHHHHHHHHHhhcCCCCce-EEEEccce-eCCCC--ccccccCCCccCccccccccCchhHHHHhhcCC
Q 001303 655 VLETGHDILFFWVARMVMLGIKLGGEVPFT-KVYLHPMI-RDAHG--RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 730 (1104)
Q Consensus 655 ~~~~G~Dil~fW~arm~~~~~~l~g~~PFk-~V~~Hg~v-~D~~G--~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~ 730 (1104)
+++.|.|+. .|+.++.. .+...|..|.+ .++.|||| ++.+| +|||||+||+|+|.|+++
T Consensus 239 Iyv~G~dq~-~~f~~l~~-~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~--------------- 301 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMKA-AMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD--------------- 301 (464)
T ss_dssp EEEEEGGGG-GGHHHHHH-HHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH---------------
T ss_pred EEEecCcHH-HHHHHHHH-HHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHh---------------
Confidence 446688877 68887554 45555666655 78899999 55667 499999999999999998
Q ss_pred CChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccCcccccccchHHHHHH--------HH-HHHHHHHHHHHHhhhh
Q 001303 731 LDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--------RQ-WCNKLWNAVRFSMSKL 801 (1104)
Q Consensus 731 l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~~~~di~f~~~~i~~~--------r~-f~nKl~N~~rf~l~~~ 801 (1104)
++|+|++|||+++. ....|++|+++.+... -+ -..++.++++..-
T Consensus 302 ----------------------~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--- 355 (464)
T 3fnr_A 302 ----------------------EIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--- 355 (464)
T ss_dssp ----------------------HHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT---
T ss_pred ----------------------hccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh---
Confidence 89999999999985 4577999999877431 11 1233444444321
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHH
Q 001303 802 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 881 (1104)
Q Consensus 802 ~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r 881 (1104)
..++.+.. .....++..|+|++.+|.++.+.+.+++++|+|+.+++.++++. ..+.++|-+ + +.+..++ +....|
T Consensus 356 ~~~~~~~~-~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~-~-~vl~~~~-~~~~aR 430 (464)
T 3fnr_A 356 KKIDDVMK-ADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE-N-KVVGSAN-ENDLLK 430 (464)
T ss_dssp CCTTTSTT-CCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH-C-CCTTSTT-HHHHHH
T ss_pred ccCCCccc-cChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh-C-cCCCCCH-HHHHHH
Confidence 11222211 12223455599999999999999999999999999999999997 677666644 3 3443222 211123
Q ss_pred HHHHHHHHHHHHHHHHHHhchhh
Q 001303 882 SAAQHVLWVCLETGLRLLHPFMP 904 (1104)
Q Consensus 882 ~~a~~~L~~~l~~~l~LL~PfmP 904 (1104)
....... +|..+|.||--=.|
T Consensus 431 L~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 431 LFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHHH--HHHHHHHhcCCCch
Confidence 3322222 77777777754444
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=3.8e-28 Score=265.95 Aligned_cols=136 Identities=24% Similarity=0.301 Sum_probs=115.0
Q ss_pred CCcceEEEeeccccccccCceEEecCCcc----------------c------------------------cccccCcEee
Q 001303 361 GGLGEIVVATTRVETMLGDTAIAIHPEDA----------------R------------------------YSHLHGKFAI 400 (1104)
Q Consensus 361 ~~~~~l~vaTTrPeTl~g~~aiaV~P~d~----------------r------------------------y~~l~G~~~~ 400 (1104)
+.+.+|+|||||||||||++||||||+.+ + +.+|+|+++.
T Consensus 30 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~ 109 (261)
T 2wfg_A 30 ENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRID 109 (261)
T ss_dssp TSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEE
T ss_pred CCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEE
Confidence 34678999999999999999999999932 1 2248999999
Q ss_pred cCCC-CCceeEEecCccccCCCCCCceecCCCCCcchHHHHHH-------hC-------CccceecCC--CCccc-----
Q 001303 401 HPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKR-------HN-------LEFINIFTD--DGKIN----- 458 (1104)
Q Consensus 401 ~P~~-~~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~~~~-------~~-------L~~~~iid~--~G~~~----- 458 (1104)
||++ ++.+||+.+++ |++++|||+||+|||||++||++|++ || |+++++||. +|.++
T Consensus 110 ~Pl~~~~~ipV~~ady-V~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~ 188 (261)
T 2wfg_A 110 APYAVNKNLRVLPMET-VLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLV 188 (261)
T ss_dssp CTTCSSCSEEEEECTT-CCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHH
T ss_pred CCCCCCceeEEEeecc-ccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhh
Confidence 9998 67899999996 99999999999999999999999999 99 899999987 44322
Q ss_pred ----------------------------c--CCCCCCCCCchhhHHHHHHHHHHHcCCeeeeeccccccc
Q 001303 459 ----------------------------S--NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLG 498 (1104)
Q Consensus 459 ----------------------------~--~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~~~~~~p 498 (1104)
. ++| +|.||++++||+.|++.|+++|++....++.|+--
T Consensus 189 ~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g-~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~ 257 (261)
T 2wfg_A 189 NDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIG-KYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHH 257 (261)
T ss_dssp HHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSS-TTTTSBHHHHHHHHHHHHHHTTSEEEECC------
T ss_pred ccccccccchhhhhhhhhhhhhhcccccceEecc-ccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeeccc
Confidence 1 166 89999999999999999999999999988877643
No 26
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.4e-27 Score=254.86 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=109.8
Q ss_pred CCcceEEEeeccccccccCceEEecCCcc----------------c------ccc------------------ccCcEee
Q 001303 361 GGLGEIVVATTRVETMLGDTAIAIHPEDA----------------R------YSH------------------LHGKFAI 400 (1104)
Q Consensus 361 ~~~~~l~vaTTrPeTl~g~~aiaV~P~d~----------------r------y~~------------------l~G~~~~ 400 (1104)
+.+.+|+|||||||||+|+|||||||+++ + |++ |+|+++.
T Consensus 27 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~ 106 (252)
T 2wfd_A 27 GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 106 (252)
T ss_dssp TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEE
T ss_pred CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEE
Confidence 45679999999999999999999999962 1 333 8999999
Q ss_pred cCCCC-CceeEEecCccccCCCCCCceecCCCCCcchHHH----------HHHhCCc--------cceecCC--------
Q 001303 401 HPFNG-RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV----------GKRHNLE--------FINIFTD-------- 453 (1104)
Q Consensus 401 ~P~~~-~~ipIi~d~~~V~~~~GTG~V~~~Pahd~~D~~~----------~~~~~L~--------~~~iid~-------- 453 (1104)
||+++ +.+||+.+++ |++++|||+||+|||||++||++ +++|||+ ++++|+.
T Consensus 107 ~Pl~~~~~ipV~~ady-V~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~ 185 (252)
T 2wfd_A 107 APLTSYKVIYVLPMLT-IKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSA 185 (252)
T ss_dssp CSSCSSSCEEEEECSC-CCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHH
T ss_pred cCCCCCceeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccch
Confidence 99999 5899999996 99999999999999999999994 7889988 4666642
Q ss_pred -------------------------------CCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeee
Q 001303 454 -------------------------------DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 490 (1104)
Q Consensus 454 -------------------------------~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~ 490 (1104)
+|+|+ +| +|.||++++||+.|++.|+++|++...
T Consensus 186 ~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~-~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 186 VTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VD-GFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--ST-TSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhhhccccCcchhhhhhhhhhhhccccccCceEe--ee-ccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 47776 67 899999999999999999999998654
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.93 E-value=2.9e-25 Score=270.91 Aligned_cols=195 Identities=17% Similarity=0.102 Sum_probs=121.7
Q ss_pred EEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhh--cCCCChHHHHHHHhccCCCCCCCCCCCCchHHHHH
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE--EGNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 762 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~--~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~ 762 (1104)
.++.||||+ .+|+|||||+||+|+|.|+++. ..+.+...+. ...+++.| +.|. .+|+|++||+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~-~~~~~~~~~~~~~~~~~~~e-~~a~------------~vg~~aiRyf 445 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEE-ATRRARAIVEEKNPDHPDKE-EAAR------------MVALGAIRFS 445 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHH-HHHHHHHHHHHHCTTCSCHH-HHHH------------HHHHHHHHHH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHH-HHHHHHHHHHhhCCCCCcHH-HHHH------------hhcHHHHHHH
Confidence 578899998 6899999999999999999983 1122233322 12344444 2222 4999999999
Q ss_pred HHhccCcccccccchHHHHHHHH-HHHHHHHHHHHHh---hhhCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 001303 763 LVSYTAQSDKINLDIQRVVGYRQ-WCNKLWNAVRFSM---SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL 838 (1104)
Q Consensus 763 L~~~~~~~~di~f~~~~i~~~r~-f~nKl~N~~rf~l---~~~~~~~~p~~~~~~~~~~~~D~wils~L~~~v~~v~~~~ 838 (1104)
+++... ..|++||++.+....+ ..+.+-++...+. .+...+..+ . .....+.++-++..|..+...+.+++
T Consensus 446 ~L~~~~-~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~--~--~~l~~~~e~~L~~~l~~~~~~v~~a~ 520 (592)
T 1iq0_A 446 MVKTEP-KKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAP--D--LSQATPYERALALDLLDFEEAVLEAA 520 (592)
T ss_dssp HHHSCT-TSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCC--C--GGGCCHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHhcCC-CCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCC--c--cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999654 6899999998864322 1222222322221 222211111 1 11124556778889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhHhHHHHHhhcc-----cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 839 NSYEFSDAASTVYSWWQYQFCDVFIEAIKP-----YFAGDNPAFASERSAAQHVLWVCLETGLRLLHP 901 (1104)
Q Consensus 839 e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~-----~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~P 901 (1104)
++++++.+++.++++. ...|.|++.++| ++...++.....|.........+|..+|.||.-
T Consensus 521 ~~~~p~~~~~yl~~La--~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 521 EERTPHVLAQYLLDLA--ASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HHTCHHHHHHHHHHHH--HHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHH--HHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999985 556777787764 443333321223444445666777788888753
No 28
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.93 E-value=4.5e-26 Score=248.30 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=126.6
Q ss_pred CCCCcccccccccccccCcceEEeecCcccccccceEeeEeeecCCCcceEEEeeccccccccCceEEecCCcc------
Q 001303 316 CVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA------ 389 (1104)
Q Consensus 316 p~~~TaLsd~EVe~~~~~~~t~~~~~~y~~~~~~g~l~~~~~~l~~~~~~l~vaTTrPeTl~g~~aiaV~P~d~------ 389 (1104)
..++|+||+.|-.. ..+..||.++ .+++.+.+.+++||||||||||||+||||||+.+
T Consensus 48 ~~~~~~l~~f~~~~--------------~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~ 111 (311)
T 3pz6_A 48 EKLNIKLPRFYSNP--------------KNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYI 111 (311)
T ss_dssp CTTSCCCCCCCCCH--------------HHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEE
T ss_pred HHhCCCccccccCC--------------Ccccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEE
Confidence 45677888766531 1123345555 5677778889999999999999999999999942
Q ss_pred ----c------------cc--------------------cccCcEeecCCCCC-ceeEEecCccccCCCCCCceecCCCC
Q 001303 390 ----R------------YS--------------------HLHGKFAIHPFNGR-KIPIICDAILVDPKFGTGAVKITPAH 432 (1104)
Q Consensus 390 ----r------------y~--------------------~l~G~~~~~P~~~~-~ipIi~d~~~V~~~~GTG~V~~~Pah 432 (1104)
+ |+ +|+|.++.|||.++ .+||+++++ |++++|||+||+||||
T Consensus 112 ~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~-Vt~d~GTGiVh~aPaH 190 (311)
T 3pz6_A 112 NKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLET-IKMDKGTGIVTSVPSD 190 (311)
T ss_dssp ETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTT-CCTTSTTSEEEECTTT
T ss_pred CCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCc-CccCCCcceEEeCCCC
Confidence 1 11 37799999999997 999999996 9999999999999999
Q ss_pred CcchHHHHHH-----------hC---------CccceecCC---------------------------------------
Q 001303 433 DPNDFDVGKR-----------HN---------LEFINIFTD--------------------------------------- 453 (1104)
Q Consensus 433 d~~D~~~~~~-----------~~---------L~~~~iid~--------------------------------------- 453 (1104)
|++||.+|++ +| +++++||+.
T Consensus 191 g~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~ 270 (311)
T 3pz6_A 191 APDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFY 270 (311)
T ss_dssp CHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCC
Confidence 9999997776 66 477888852
Q ss_pred CCccccCCCCCCCCCchhhHHHHHHHHHHHcCCeeeeec
Q 001303 454 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 492 (1104)
Q Consensus 454 ~G~~~~~~g~~~~Gl~~~~ar~~vi~~L~~~g~l~~~~~ 492 (1104)
+|.|. +| +|.|+++.+||+.|.++|.++|..+....
T Consensus 271 ~Gvm~--~g-~~~G~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 271 TGIMK--MG-PFAGQSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp HCEEC--SS-TTTTSBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEe--ee-ccCCeEHHHHHHHHHHHHHHCCCceEEcc
Confidence 35554 57 99999999999999999999999876643
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.92 E-value=6.3e-24 Score=259.93 Aligned_cols=192 Identities=16% Similarity=0.107 Sum_probs=122.3
Q ss_pred EEEEccceeCCCCccccccCC--CccCccccccccCchhHHHHhh--cCCCChHHHHHHHhccCCCCCCCCCCCCchHHH
Q 001303 685 KVYLHPMIRDAHGRKMSKSLG--NVIDPLEVINGISLEGLHKRLE--EGNLDPKELEVAKKGQKADFPNGIPECGTDALR 760 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~G--NvIdP~dii~g~~l~~l~~~l~--~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDalR 760 (1104)
.++.||||. .+|.|||||+| |+|+|.|+++.. .+..+..+. ..++++.+.+...+ .+|+||+|
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~-~~~a~~~~~~~~~~~~~~~~~~~a~-----------~vg~~AvR 477 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEA-VKRARELIEEKNPALSDEEKAEVAE-----------KVGIGAIR 477 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHH-HHHHHHHHHHHCTTSCHHHHHHHHH-----------HHHHHHHH
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHH-HHHHHHHHHhcCcccchhhHHHHHH-----------hcChhHhh
Confidence 589999998 78899999999 999999999721 111112222 22355555433221 59999999
Q ss_pred HHHHhccCcccccccchHHHHH------------HHHHHHHHHHHHHHHhhhhCCCCCC-----CCCCCCCCCChhhHHH
Q 001303 761 FALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLGEGFVP-----PLKLHPHNLPFSCKWI 823 (1104)
Q Consensus 761 ~~L~~~~~~~~di~f~~~~i~~------------~r~f~nKl~N~~rf~l~~~~~~~~p-----~~~~~~~~~~~~D~wi 823 (1104)
|++++.. ...|++||++.+.. +.+.|.-+.++. . .+..+ ..........+.++-+
T Consensus 478 y~~L~~~-~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~----~---~~~~~~~~~~~~~~~~~l~~~~e~~L 549 (629)
T 2zue_A 478 YNLIKYS-PDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAE----E---EGIKVDPETLFKNADFTKLSEREREL 549 (629)
T ss_dssp HHHHSSC-TTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHH----H---TTCCCCHHHHHHHCCCSSCCHHHHHH
T ss_pred HHHHhcC-CCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhh----c---cccccccccccccccccCCCHHHHHH
Confidence 9999965 47899999998752 122333222221 0 00000 0000011224567778
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 824 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHP 901 (1104)
Q Consensus 824 ls~L~~~v~~v~~~~e~~~f~~a~~~i~~f~~~~~~n~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~~l~~~l~LL~P 901 (1104)
+..|..+...+.+++++++++.+++.++++. ..|..+| +.+ +.+.. +++....|.........+|..+|.||.-
T Consensus 550 ~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La-~~fn~fy-~~~-~vl~~-~~~~~~~RL~L~~a~~~vL~~gL~lLGI 623 (629)
T 2zue_A 550 VIMLSKFPRIVEQAGKDVKPHLIAWFANELA-SLFNKFY-MDH-PVLKA-EEGVREARLLLVMAVEQVLKNALYLMGI 623 (629)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHHH-HHC-CSTTS-CTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHH-Hhc-cccCC-ChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999986 5555555 544 34433 2221224444455667778888888753
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.88 E-value=6.2e-24 Score=256.05 Aligned_cols=124 Identities=11% Similarity=0.157 Sum_probs=95.2
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC----ChHHHHHHHHHHHHc--CCCccccCHH
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG----IATQVVVEKKLMRER--KLTRHDIGRE 247 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G----lp~q~~vek~l~~~~--g~~~~~~~re 247 (1104)
.+++...|||||.||||||++.++.|+++||.|++|++|.++.|+|++| +|.. +.+. .++ |.++.+++..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~--~~~a--~~~~~G~~~~~~p~p 96 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRN--VPQE--WKDYLGMPISEVPDP 96 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSS--SCGG--GGGGTTSBGGGSCCT
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhH--HHHH--HHHHcCCCcccCCcc
Confidence 4455556999999999999999999999999999999999999999999 2211 0000 123 6666444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHH-HHHHHHHHHHhcC-cEEE
Q 001303 248 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSK-AVTEAFVRLYKEG-LIYR 307 (1104)
Q Consensus 248 ~f~~~~~~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~-~v~~~F~~L~~~G-lIyr 307 (1104)
| ..|++|++.+.+.|.+.|+.||+++|+ +++++. |.. .+++++.+|.++| .||+
T Consensus 97 -~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 -W-GCHESYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp -T-SSSSSHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred -h-hhHHHHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 2 236789999999999999999998773 344443 666 7899999999999 7774
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.74 E-value=4.8e-16 Score=189.08 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=97.7
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCC----------
Q 001303 170 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKL---------- 239 (1104)
Q Consensus 170 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~---------- 239 (1104)
..++.+|-.-=|||||.+||||+++.++.|+++|+.+..||+|........+|..+-..+... .+.|.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~--~~~g~~~~~~~~~i~ 218 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF--ERYGNEEALVKDPIH 218 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH--HHHCCHHHHHHCHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHH--HHhCchhhccCCChH
Confidence 345788888899999999999999999999999999999999999999999888764433210 01110
Q ss_pred ------------------------Ccccc----------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCccccC
Q 001303 240 ------------------------TRHDI----------GREQFVSEVWKWKDEYGGTILRQQRRLGASLD-WSRECFTM 284 (1104)
Q Consensus 240 ------------------------~~~~~----------~re~f~~~~~~~~~~~~~~i~~ql~~lG~s~D-W~r~~~T~ 284 (1104)
...+. |.++-++..+.+++.+...+++.+.+||+.+| |.++-
T Consensus 219 ~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES--- 295 (607)
T 1f7u_A 219 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGES--- 295 (607)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGG---
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcc---
Confidence 00000 11122222345678888999999999999998 44432
Q ss_pred ChhhH-HHHHHHHHHHHhcCcEEEcc
Q 001303 285 DEKRS-KAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 285 d~~~~-~~v~~~F~~L~~~GlIyr~~ 309 (1104)
.|. ..+..++.+|.++|++|...
T Consensus 296 --~~~~~~~~~vi~~L~~kG~~ye~d 319 (607)
T 1f7u_A 296 --QVSKESMLKAIDLFKEKGLTHEDK 319 (607)
T ss_dssp --GCCHHHHHHHHHHHHHTTCEEEET
T ss_pred --hhhhhHHHHHHHHHHhCCCEEEEC
Confidence 233 57899999999999999854
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.79 E-value=8.1e-09 Score=122.67 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=67.2
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==||.|||.||||||++.++...++| +|++.|+.=+|..--+ +.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~----------------R~------------ 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR----------------RV------------ 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG----------------GC------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc----------------cc------------
Confidence 34555899999999999999999777776 3444555544443111 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
..++.+.|.++|+.||+ +|+..++. .+|.....++..+|.++|+.|.
T Consensus 144 --~~e~~~~I~edL~wLGl--~wd~~~~q--Sdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 --DPEAYDMIPADLEWLGV--EWDETVIQ--SDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp --CTTHHHHHHHHHHHHTC--CCSEEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcCC--CCCCCccc--ccCHHHHHHHHHHHHHcCCcee
Confidence 23467889999999995 55455444 3577788889999999999996
No 33
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.57 E-value=2.4e-07 Score=109.98 Aligned_cols=89 Identities=31% Similarity=0.469 Sum_probs=63.7
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||||||++.++...++|- ..|.-++.+-=+|. .|. ..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~--~~G~filRieDtD~-------------------~R~--------------~~~ 51 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARH--RGGKFILRIEDTDR-------------------ERS--------------RPE 51 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCSS-------------------SSC--------------CHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEEeeCCc-------------------ccc--------------chH
Confidence 7999999999999999987666663 34555555544542 111 134
Q ss_pred HHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 260 YGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
+.+.|.++|+.||+ ||+. .|+. .++.....++..+|.++|++|.
T Consensus 52 ~~~~i~~dL~wLGl--~wde~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 52 YTENILEGLQWLGL--TWDEGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHTTC--CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 66889999999995 6665 3433 2455567788889999999997
No 34
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.87 E-value=9.4e-06 Score=90.41 Aligned_cols=91 Identities=25% Similarity=0.376 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 001303 179 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 258 (1104)
Q Consensus 179 pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~ 258 (1104)
=+|.|||.|||||+++.++...++| ++++.|+.=+|..--+ +. ..
T Consensus 10 FAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~----------------R~--------------~~ 54 (298)
T 1nzj_A 10 FAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP----------------RE--------------VP 54 (298)
T ss_dssp ECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG----------------GS--------------CT
T ss_pred ECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch----------------hh--------------HH
Confidence 3799999999999999986555554 4444554444432111 00 13
Q ss_pred HHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHhcCcEEEc
Q 001303 259 EYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRD 308 (1104)
Q Consensus 259 ~~~~~i~~ql~~lG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 308 (1104)
++.+.|.++|+.||+. |+. .++.+ ++.....++..+|.++|++|..
T Consensus 55 ~~~~~I~~dL~~LGl~--~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 55 GAAETILRQLEHYGLH--WDGDVLWQS--QRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp THHHHHHHHHHHTTCC--CSSCCEEGG--GCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCC--CCCCCeeee--CCHHHHHHHHHHHHHcCCcccC
Confidence 3568899999999965 545 34433 3567888999999999999964
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.80 E-value=2.9e-05 Score=92.04 Aligned_cols=97 Identities=30% Similarity=0.346 Sum_probs=71.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
.++++--+|+|||.||||||++.++.|.++|. ..|.-++.+--+|. + +
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~---~----------------r----------- 59 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL---E----------------R----------- 59 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC---C----------------S-----------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc---c----------------c-----------
Confidence 46677778999999999999999999999998 67888777554442 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHhcCcEEEc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEGLIYRD 308 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 308 (1104)
....+.+.|.+.|+.||+. |+. +|+ -.++.....++..+|.++|.+|..
T Consensus 60 ---~~~~~~~~I~~~l~wlGl~--~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 60 ---SEREYEEKLMESLRWLGLL--WDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp ---GGGHHHHHHHHHHHHHTCC--CSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ---cHHHHHHHHHHHHHHcCCC--CCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeEe
Confidence 1234567789999999964 554 233 234556777888999999999854
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.65 E-value=8.5e-05 Score=89.96 Aligned_cols=97 Identities=26% Similarity=0.318 Sum_probs=70.4
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHH
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 252 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~ 252 (1104)
++.+=.+ |+|||.||||||++.++.+.++|. ..|.-++.+==+|. .|.
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~-------------------~r~---------- 176 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT-------------------ERS---------- 176 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS-------------------SSC----------
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh-------------------hhc----------
Confidence 3444444 999999999999999999999986 45766666544441 011
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 253 VWKWKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 253 ~~~~~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
...+.+.|.++|+.||+ ||+.. |+.+ ++.....++..+|.++|++|...
T Consensus 177 ----~~~~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c~ 234 (592)
T 3al0_C 177 ----SREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYVV 234 (592)
T ss_dssp ----CHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEEE
T ss_pred ----cHHHHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEec
Confidence 23456789999999996 46563 4443 34467888999999999999764
No 37
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.61 E-value=9.3e-05 Score=88.10 Aligned_cols=95 Identities=23% Similarity=0.289 Sum_probs=66.0
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++-=+|.|||.||||||++.++...++| ...|.-++.+-=+|.. +
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG~fiLRieDTD~~-------------------R------------- 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNPV-------------------K------------- 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCGG-------------------G-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCch-------------------h-------------
Confidence 44545899999999999999999888887 3456555555555531 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
-+.++.+.|.++|+.||+..| +..++.+ +|.....+...+|.++|+.|.
T Consensus 73 -~~~e~~~~I~edL~wLGl~wd-e~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 -EDIEYVESIKNDVEWLGFHWS-GNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CCHHHHHHHHHHHHHTTCCCS-SSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred -cCHHHHHHHHHHHHHcCCCCC-CCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 124567899999999995443 2344433 344444455579999999996
No 38
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.57 E-value=8.1e-05 Score=87.79 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=70.6
Q ss_pred ECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 001303 177 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 256 (1104)
Q Consensus 177 ~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~ 256 (1104)
+==+|.|||.|||||+++.++...++|. ..|.-++.+--+|.. | -
T Consensus 28 ~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R--------------~ 72 (490)
T 4g6z_A 28 TRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE-------------------R--------------S 72 (490)
T ss_dssp EEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG-------------------G--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc-------------------c--------------c
Confidence 3336999999999999999999999885 467777766666641 0 0
Q ss_pred HHHHHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 257 KDEYGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 257 ~~~~~~~i~~ql~~lG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
..++.+.|.++|+.||+ +|+.. |+. .++....+++..+|.++|++|...
T Consensus 73 ~~~~~~~i~~dl~wlGl--~~d~~~~~q--S~r~~~y~~~~~~Li~~G~aY~C~ 122 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLGL--DYDEGPYYQ--MQRMDRYREVLAQMQEKGLVYPCY 122 (490)
T ss_dssp CHHHHHHHHHHHHHTTC--CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHcCC--CCCCCCccc--ccCHHHHHHHHHHHHHCCCEEeCC
Confidence 13567889999999996 56553 333 356677788899999999999764
No 39
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.39 E-value=0.00024 Score=88.31 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=67.4
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 254 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~ 254 (1104)
+++==+|.|||.||||||++.++...++|- ..|.-++.+-=+|.. +.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~--~gG~fiLRIEDTD~~-------------------R~------------ 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQ--YGGQFNLRMDDTNPE-------------------LA------------ 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCTT-------------------TC------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCcc-------------------cc------------
Confidence 344448999999999999999998777773 345444444444421 10
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHhcCcEEE
Q 001303 255 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 307 (1104)
Q Consensus 255 ~~~~~~~~~i~~ql~~lG~s~DW~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 307 (1104)
..++.+.|.++|+.||+..| +..++. .+|.....++..+|.++|+.|.
T Consensus 114 --~~e~~~~IledL~wLGl~wd-e~~~~q--Ser~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 --RQEYVDSIADDLKWLGLDWG-EHFYYA--SDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp --CHHHHHHHHHHHHHHTCCCT-TCEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcCCCCC-CCcccH--hhhHHHHHHHHHHHHHCCCcEe
Confidence 24577899999999995443 233333 3667778888999999999996
No 40
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.22 E-value=0.00062 Score=81.44 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=64.5
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||||||++.++.-.++|- ..|.-+|.+==+|.. |. +.+
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRieDtD~~-------------------R~--------------~~~ 74 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLRIEDTDQS-------------------RY--------------SPE 74 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCTT-------------------SC--------------CHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCC-------------------cC--------------CHH
Confidence 8999999999999999999999874 456555554444421 11 134
Q ss_pred HHHHHHHHHHHhccccccCC----cccc-CChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSR----ECFT-MDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r----~~~T-~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
+.+.|.++|+.||+..|-.- .|.. .-.++...-+++..+|.++|++|...
T Consensus 75 ~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ 129 (512)
T 4gri_A 75 AENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCY 129 (512)
T ss_dssp HHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccc
Confidence 56789999999996555211 0111 12234455667888999999999654
No 41
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.00049 Score=77.64 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=42.0
Q ss_pred hCCcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccc
Q 001303 650 FYPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 650 ~~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
.|.+++...|.||.... .+|-++ -.+....| .++.|+++.+.+|+|||||.||+|++.|
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l~rdla--~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHMLARENL--PRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD 227 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC
T ss_pred hcCCCEEEechhhHHHHHHHHHHH--HhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC
Confidence 36788999999996521 122222 22333345 3778899999999999999999998765
No 42
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.18 E-value=0.00049 Score=81.14 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=66.1
Q ss_pred CCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 001303 180 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 259 (1104)
Q Consensus 180 PPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~~ 259 (1104)
+|.|||.||||||++.++.-.++|- ..|.-++.+==+|.. |. ..+
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R~--------------~~~ 51 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRIEDTDRA-------------------RY--------------VPG 51 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECBCCCCTT-------------------SC--------------CTT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCCc-------------------cc--------------ChH
Confidence 7999999999999999999988883 456555554444431 11 123
Q ss_pred HHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 260 YGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 260 ~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
+.+.|.++|+.||+ ||+.. |+. .++...-.++..+|.++|++|...
T Consensus 52 ~~~~I~~dl~wlGl--~wd~~~~~gG~~gp~~Q--S~r~~~y~~~~~~L~~~G~aY~c~ 106 (468)
T 1j09_A 52 AEERILAALKWLGL--SYDEGPDVGGPHGPYRQ--SERLPLYQKYAEELLKRGWAYRAF 106 (468)
T ss_dssp HHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCCCCeec--cCCHHHHHHHHHHHHHcCCeEEcC
Confidence 56789999999995 56664 333 345566778889999999999754
No 43
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.14 E-value=0.00067 Score=80.37 Aligned_cols=95 Identities=27% Similarity=0.311 Sum_probs=69.0
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 255 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~ 255 (1104)
++==+|.|||.||||||++.++.-.++|- ..|.-++.+==+|.. |.
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~-------------------R~------------- 72 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE-------------------RS------------- 72 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT-------------------TC-------------
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc-------------------cc-------------
Confidence 34447999999999999999988888875 456655555555431 10
Q ss_pred HHHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 256 WKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 256 ~~~~~~~~i~~ql~~lG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
..++.+.|.++|+.||+ ||+.. |+.+ ++....+++..+|.++|++|...
T Consensus 73 -~~~~~~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c~ 130 (488)
T 3afh_A 73 -SREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYVV 130 (488)
T ss_dssp -CHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -cHHHHHHHHHHHHHcCC--CCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEecC
Confidence 23456789999999996 56563 4443 44467888999999999999764
No 44
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.11 E-value=0.00068 Score=80.38 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=67.7
Q ss_pred CCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 001303 179 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 258 (1104)
Q Consensus 179 pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~~~~~~ 258 (1104)
=+|.|||.|||||+++.++.-.++|- ..|.-++.+==+|.. |. ..
T Consensus 11 FAPsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRieDtD~~-------------------R~--------------~~ 55 (498)
T 2ja2_A 11 FCPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIEDTDAQ-------------------RD--------------SE 55 (498)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT-------------------TC--------------CH
T ss_pred ECcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEECcCCCc-------------------cc--------------Ch
Confidence 36999999999999999999999984 467655555444431 10 23
Q ss_pred HHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHhcCcEEEcc
Q 001303 259 EYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 309 (1104)
Q Consensus 259 ~~~~~i~~ql~~lG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 309 (1104)
++.+.|.++|+.||+ ||+. .|+.+ ++...-+++..+|.++|++|...
T Consensus 56 ~~~~~I~~~L~wlGl--~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~c~ 111 (498)
T 2ja2_A 56 ESYLALLDALRWLGL--DWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYHAF 111 (498)
T ss_dssp HHHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHcCC--CcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEEeC
Confidence 456789999999995 5656 34443 45566778889999999999764
No 45
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.04 E-value=0.014 Score=65.61 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=42.0
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhh-cC---CCCceEEE--EccceeCCCCccccccCCCccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l-~g---~~PFk~V~--~Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
|-+++...|.||... =.+|-++--+.. .| ..| ..++ .+.+|.+.+|+|||||.||.|+..|
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 567888899999753 344544433221 12 234 5555 3789999999999999999987765
No 46
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.69 E-value=0.021 Score=64.67 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=46.9
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhh-cC---CCCceEEEE-ccceeCCCCccccccCCCccCccccccccCchhHHH
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKL-GG---EVPFTKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHK 724 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l-~g---~~PFk~V~~-Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~ 724 (1104)
|-+++...|.||... =.+|-++--+.. .| ..| ..++. +.+|.+.+|+|||||.||.|+..| +-+.+.+
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 567888899999753 334444433221 23 345 44454 689999999999999999998776 3344444
Q ss_pred Hhh
Q 001303 725 RLE 727 (1104)
Q Consensus 725 ~l~ 727 (1104)
++.
T Consensus 226 Ki~ 228 (340)
T 2g36_A 226 TIL 228 (340)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 47
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.68 E-value=0.012 Score=66.28 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~d 712 (1104)
|++++.+.|.||.... .+|-++-- +....| -.+.++++...+|+|||||.||.|+..|
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRR--LHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred CCceEEecCchhHHHHHHHHHHHHH--hCCCCc--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 3788888899996532 23333322 223334 4568899998899999999999998887
No 48
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.65 E-value=0.017 Score=67.21 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=42.8
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhh-cCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l-~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||..... .|-++- .+ .+..| -++.++++...+|+|||||.||.|+..|-
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~ 245 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMR--RMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDAE 245 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHH--HHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhcCCCCe--eEeecccccCCccccccCCCCCeEecCCC
Confidence 47889999999965422 233332 23 33333 56779999999999999999999988774
No 49
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.62 E-value=0.015 Score=67.52 Aligned_cols=59 Identities=17% Similarity=0.041 Sum_probs=41.9
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhh-cCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l-~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||..... .|-++- .+ .+..| -++.++++...+|+|||||.||.|+..|-
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlar--r~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d~ 244 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIR--KTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDKE 244 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHH--HHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhcCCCCe--eecccccccCCCcccccCCCCCeEecCCC
Confidence 47899999999965422 233332 22 23333 57789999999999999999999988774
No 50
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=94.57 E-value=0.038 Score=61.84 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=44.1
Q ss_pred CCcCcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCC-ccccccCCCccCccccccccCchhHHHHhhc
Q 001303 651 YPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG-RKMSKSLGNVIDPLEVINGISLEGLHKRLEE 728 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G-~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~ 728 (1104)
|-+++...|.||.... ++ +-.+....| .++.+.++.+.+| .|||||.||.|+..|-- +.+.+|+.+
T Consensus 162 ~~~~~v~~G~DQ~~~~---~l--~R~i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~~-----~~i~~KI~~ 228 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH---ML--ARELLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDDSP-----EEIRAKIKK 228 (314)
T ss_dssp HTCSEEEEEGGGHHHH---HH--HHHHSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTCCH-----HHHHHHHHH
T ss_pred hCCCEEEcChhHHHHH---HH--HHHhcCCCc--EEeeccccccCCcccccCCCCcceecCCCCH-----HHHHHHHHh
Confidence 3567888899997532 22 222223334 4577899999999 79999999999877643 345555543
No 51
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=94.56 E-value=0.014 Score=66.44 Aligned_cols=59 Identities=29% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||.... .+|-++- .+.+..| -++.+.++...+|+|||||.||.|+..|-
T Consensus 209 ~~~~i~p~G~DQ~~~i~l~rdla~--r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~ 268 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNIMSGYEFIN--KLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNRD 268 (356)
T ss_dssp HCCCEEEEEGGGHHHHHHHHHHHH--HHSSCCC--EEEEECCCC-------------CCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhCCCCc--cccccccccCCCcccccCCCCCeeeccCC
Confidence 3889999999996532 2333332 2333334 46778999999999999999999988874
No 52
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.39 E-value=0.023 Score=66.09 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=42.4
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCC-ccCcccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GN-vIdP~di 713 (1104)
|.+++...|.||.... ..|-++- .+.+..| -.+.+.++...+|+|||||.|| .|+..|-
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlar--r~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d~ 246 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVR--QKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDPQ 246 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHH--HHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSSTT
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH--HhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccCC
Confidence 4889999999996542 2233332 2233333 5677899999999999999999 8987763
No 53
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.23 E-value=0.031 Score=65.15 Aligned_cols=58 Identities=36% Similarity=0.465 Sum_probs=41.2
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhhcCCCCceEEEEccceeCCCCc-cccccCCCccCccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKS~GNvIdP~d 712 (1104)
|.+++...|.||..... .|-++- .+ +..| .-++.++++...+|. |||||.||.|+..|
T Consensus 186 l~~~l~~gG~DQ~~ni~l~rdlar--r~-~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVEMGGTDQRFNLLVGREVQR--AY-GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEEEEEGGGHHHHHHHHHHHH--HT-TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEEEechHHHHHHHHHHHHHH--Hh-CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 34888899999964322 222222 22 3333 457789999999996 99999999998877
No 54
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.22 E-value=0.02 Score=65.96 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=40.9
Q ss_pred CCcCcccccccccccHHH-HHHHHHHh-h----------cCCCC--ceEEEEccceeCCCCccccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFFWVA-RMVMLGIK-L----------GGEVP--FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~a-rm~~~~~~-l----------~g~~P--Fk~V~~Hg~v~D~~G~KMSKS~GNvIdP~di 713 (1104)
|.+++...|.||...... |-++--.. . ..+.+ -.-.+.++++...+|+|||||.||.|+..|-
T Consensus 231 ~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~ 307 (392)
T 1y42_X 231 QGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY 307 (392)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT
T ss_pred CCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC
Confidence 378999999999543221 22221110 0 01011 1356788999999999999999999988774
No 55
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=94.15 E-value=0.23 Score=44.90 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCC
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENE---SNRLGNSN 1104 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~---l~~l~~~~ 1104 (1104)
.....|++.|.+++++++.++..++..|++|+|-.. +.+.+..-..++++++++|..+.+. |+.+++.|
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~~Gg 89 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 345688999999999999999999999999998654 4556666788888999998888876 44444443
No 56
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=93.79 E-value=0.043 Score=62.86 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCcCcccccccccccHH-HHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCC-ccCccc
Q 001303 651 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW~-arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GN-vIdP~d 712 (1104)
|-+++...|.||..... +|-++- .+....| ..+.++++.+.+|+|||||.|| .|+..|
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~--r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLP--ALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGG--GGTCCCC--EEEEECCCCCSSCC-------CCSCBTTC
T ss_pred hcCCEEEcChhHHHHHHHHHHHHH--HcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccC
Confidence 56788888999965432 222321 2222345 4667899999999999999999 687655
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.49 E-value=0.049 Score=61.90 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=41.8
Q ss_pred CCcCccccccccccc-HHHHHHHHHHh-hcC---CCCceEEEE-ccceeCCCCc-cccccCCCccCcccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL-HPMIRDAHGR-KMSKSLGNVIDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~-l~g---~~PFk~V~~-Hg~v~D~~G~-KMSKS~GNvIdP~di 713 (1104)
|-+++...|.||... =.+|-++--+. ..| ..| .-++. +.+|.+.+|+ |||||.||.|+..|-
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 567888899999753 33344443221 123 345 44554 6899999997 999999998876653
No 58
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.058 Score=62.30 Aligned_cols=59 Identities=29% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCC-CccccccCCCc-cCcccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAH-GRKMSKSLGNV-IDPLEV 713 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~-G~KMSKS~GNv-IdP~di 713 (1104)
|.+++.+.|.||.... .+|.++ -.+....| ..+.|.++.+.+ |+|||||.||. |+..|-
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~ 242 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENL--PSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE 242 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCCC----------CCSCBTTCC
T ss_pred hCCCEEecCccHHHHHHHHHHHH--HHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccCC
Confidence 6778888899996532 233332 22223344 566789999999 99999999996 876653
No 59
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.16 E-value=0.058 Score=60.97 Aligned_cols=60 Identities=35% Similarity=0.503 Sum_probs=40.2
Q ss_pred CCcCccccccccccc-HHHHHHHHHHh-hcC---CCCceEEEEc---cceeCCCC-ccccccCCCccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYLH---PMIRDAHG-RKMSKSLGNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~-l~g---~~PFk~V~~H---g~v~D~~G-~KMSKS~GNvIdP~d 712 (1104)
|-+++...|.||... =.+|-++--+. ..| ..| ..+++ .++.+.+| +|||||.||.|+..|
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 567888899999754 23344443221 123 345 33343 69999999 999999999887765
No 60
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.26 E-value=0.1 Score=59.65 Aligned_cols=58 Identities=24% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCC-CCceEEEEccceeCC-CCc-cccccC-CCccCccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGE-VPFTKVYLHPMIRDA-HGR-KMSKSL-GNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~-~PFk~V~~Hg~v~D~-~G~-KMSKS~-GNvIdP~d 712 (1104)
|-+|+...|.||.... .+|-++--+ ... .| .++.|++|.+. +|. |||||. ||.|+..|
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~--~~~~~~--~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIK--KIKKKP--VILSHGMLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHH--TCSCCC--EEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHh--CCCCCc--eEEeCCeeecCCCCCCCCcCCCCCCeeecCC
Confidence 4578888899996543 344444332 222 13 46788999985 895 999999 57887654
No 61
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=91.92 E-value=0.077 Score=67.19 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHcCCeeeeec--------------ccccccccccCCCeeeeccccccccccchHHHHHHHhhhccCCCc
Q 001303 472 KAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKK 537 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~~--------------~~~~~p~c~Rs~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~~ 537 (1104)
.+-..+...|.++|++...+. .+...+.|+|||.+|+.+-.+|||++++++++++++.+ . .
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l---~--~ 228 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDL---D--K 228 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHG---G--G
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHH---h--h
Confidence 345678889999998765432 12234789999999999999999999999999999998 3 3
Q ss_pred eEEeccccHHHHHHHhcc
Q 001303 538 LELIPRQYTAEWRRWLEA 555 (1104)
Q Consensus 538 i~~~P~~~~~~~~~wl~~ 555 (1104)
+.-.|+..+..-.+||..
T Consensus 229 ~~~wp~~v~~~~~~wig~ 246 (880)
T 4arc_A 229 LDHWPDTVKTMQRNWIGR 246 (880)
T ss_dssp CTTSCHHHHHHHHHHHCE
T ss_pred cccccHHHHHHHHhhhcc
Confidence 334788888888999953
No 62
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=91.12 E-value=0.51 Score=55.86 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=45.6
Q ss_pred cccccccccHHHHHHHHHHhh-----cCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCC
Q 001303 657 ETGHDILFFWVARMVMLGIKL-----GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 731 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l-----~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l 731 (1104)
+-|.|.+-. ..+.+.+.-.+ ....| .+.-++++++.+|+||||+.|++ ...++ +..
T Consensus 213 iRG~D~~~~-t~~q~~l~~aL~~~g~g~~~P--~~~h~plil~~~g~KLSKR~g~~-~l~~~---------r~~------ 273 (498)
T 2ja2_A 213 LRGEDLLPS-TPRQLALHQALIRIGVAERIP--KFAHLPTVLGEGTKKLSKRDPQS-NLFAH---------RDR------ 273 (498)
T ss_dssp EEEGGGGGG-HHHHHHHHHHHHHTTSCCCCC--EEEEECCEECSSSSBCCTTSGGG-BHHHH---------HHH------
T ss_pred EEChhhhhc-cHHHHHHHHHHHhhcCCCCCC--eEEEeeeeECCCCCcccccCCcc-cHHHH---------HhC------
Confidence 446675543 23333333333 33344 55556999999999999999995 33333 222
Q ss_pred ChHHHHHHHhccCCCCCCCCCCCCchHHHHHHHhccC
Q 001303 732 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA 768 (1104)
Q Consensus 732 ~~~e~~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~ 768 (1104)
.|.++|+|.||+..+-
T Consensus 274 ---------------------G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 274 ---------------------GFIPEGLLNYLALLGW 289 (498)
T ss_dssp ---------------------TCCHHHHHHHHHTSSC
T ss_pred ---------------------CCCHHHHHHHHHHhCC
Confidence 5889999999987643
No 63
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=91.10 E-value=0.2 Score=59.33 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=37.6
Q ss_pred CcccccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCcccccc
Q 001303 654 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 715 (1104)
Q Consensus 654 d~~~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~ 715 (1104)
+-.+-|.|.+ ....+.+.+.-++....| ...-++++++.+|+||||+.||+ ...++.+
T Consensus 220 thvirG~D~~-~~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~ 277 (481)
T 2o5r_A 220 THVIRGDDHL-SNTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRD 277 (481)
T ss_dssp SEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHH
T ss_pred CeEEEChhHH-HhHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHH
Confidence 4445678865 344555554444443445 44445888999999999999998 5555544
No 64
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=91.05 E-value=0.11 Score=60.60 Aligned_cols=58 Identities=22% Similarity=0.129 Sum_probs=34.3
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~d 712 (1104)
|-+++...|.||... =++|-++- .+....|+ ++.|.++...+| +|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p~--~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVAD--KLKYSKPA--LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHH--HHTSCCCE--EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHH--HhCCCCce--eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 345666789999654 23343432 22334563 578899999999 999999999 787665
No 65
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=90.99 E-value=0.081 Score=63.12 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred eEEEEccceeCCCCccccccCCCcc------CccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCch
Q 001303 684 TKVYLHPMIRDAHGRKMSKSLGNVI------DPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 757 (1104)
Q Consensus 684 k~V~~Hg~v~D~~G~KMSKS~GNvI------dP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaD 757 (1104)
-..+-+|++ +.+|.|||||+||.. +.=|=-.-.++.+|+.+ .|.++
T Consensus 253 P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~r---------------------------Gy~Pe 304 (553)
T 1qtq_A 253 PRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR---------------------------GYTAA 304 (553)
T ss_dssp CEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHH---------------------------TCCHH
T ss_pred CCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHC---------------------------CCCHH
Confidence 356677777 589999999999732 00000011233344433 58899
Q ss_pred HHHHHHHhccCcccccccchHHHHH
Q 001303 758 ALRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 758 alR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
|+|.||+..+-...+..+++..+..
T Consensus 305 Airnfl~~lG~s~~~~~~e~~~le~ 329 (553)
T 1qtq_A 305 SIREFCKRIGVTKQDNTIEMASLES 329 (553)
T ss_dssp HHHHHHHHHCCCSSCCCBCHHHHHH
T ss_pred HHHHHHHHcCCCCCccccchhhHHH
Confidence 9999998866544455566665554
No 66
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=90.92 E-value=0.17 Score=57.69 Aligned_cols=59 Identities=27% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhhcCCCCceEEEEccceeCCC-----------------Ccccccc-CCCccCcc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-----------------GRKMSKS-LGNVIDPL 711 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~-----------------G~KMSKS-~GNvIdP~ 711 (1104)
|-+++...|.||... =++|-++ -.+....| .++.|.++.+.+ |+||||| .||.|+..
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla--~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVA--EKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHH--TTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHH--HHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 567888899999643 2222222 22233345 357789999888 7999999 78889876
Q ss_pred cc
Q 001303 712 EV 713 (1104)
Q Consensus 712 di 713 (1104)
|-
T Consensus 252 d~ 253 (364)
T 2cya_A 252 DS 253 (364)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 67
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=90.82 E-value=0.09 Score=60.55 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=29.2
Q ss_pred cCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCCccCccc
Q 001303 653 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGNVIDPLE 712 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GNvIdP~d 712 (1104)
+++...|.||.... .+|-++-- +....| .++.+.++...+| .|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 45777899996543 33444432 334445 4677899999999 799999999998765
No 68
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.67 E-value=0.16 Score=57.56 Aligned_cols=61 Identities=28% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCcCccccccccccc-HHHHHHHHHHh-hcC---CCCceEEEE--ccceeCCCC--ccccccCCC---ccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL--HPMIRDAHG--RKMSKSLGN---VIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~-l~g---~~PFk~V~~--Hg~v~D~~G--~KMSKS~GN---vIdP~d 712 (1104)
|-+++...|.||... =++|-++-.+. ..| ..| .-++. +.+|.+.+| +|||||.|| .|+..|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 567888899999753 33444443221 123 234 33333 689998889 999999999 787665
No 69
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.36 E-value=0.19 Score=56.52 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=39.6
Q ss_pred CCcCccccccccccc-HHHHHHHHHHh-hcC---CCCceEEEE--ccceeCCCC--ccccccCCC-c--cCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIK-LGG---EVPFTKVYL--HPMIRDAHG--RKMSKSLGN-V--IDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~-l~g---~~PFk~V~~--Hg~v~D~~G--~KMSKS~GN-v--IdP~d 712 (1104)
|-+++...|.||... =.+|-++--+. ..| ..| .-++. +.++.+.+| +|||||.|| . |+..|
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 567888899999753 33344432221 112 234 33443 688889999 999999999 6 87655
No 70
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=90.25 E-value=0.45 Score=55.97 Aligned_cols=72 Identities=22% Similarity=0.190 Sum_probs=46.5
Q ss_pred cccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHH
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKEL 736 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~ 736 (1104)
+-|.|.+- ...+++.+.-.+....| ...-++++++.+|+||||+.||. ...++.+ .
T Consensus 204 irG~D~~~-~t~~q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~---------~----------- 259 (468)
T 1j09_A 204 IRAEEWLV-STPIHVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKA---------E----------- 259 (468)
T ss_dssp EEEGGGGG-GHHHHHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHH---------T-----------
T ss_pred EEChhhhh-hHHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHH---------C-----------
Confidence 34667543 33444444344433445 44455899999999999999998 4444433 1
Q ss_pred HHHHhccCCCCCCCCCCCCchHHHHHHHhccC
Q 001303 737 EVAKKGQKADFPNGIPECGTDALRFALVSYTA 768 (1104)
Q Consensus 737 ~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~~ 768 (1104)
.|-++|+|-||+..+-
T Consensus 260 ----------------G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 260 ----------------GFLPEALRNYLCLMGF 275 (468)
T ss_dssp ----------------TCCHHHHHHHHHHHSC
T ss_pred ----------------CCCHHHHHHHHHHhcc
Confidence 4779999999887543
No 71
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=90.21 E-value=0.24 Score=56.19 Aligned_cols=58 Identities=22% Similarity=0.098 Sum_probs=38.1
Q ss_pred CcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCC-CC-ccccccC-CCccCcccc
Q 001303 652 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSL-GNVIDPLEV 713 (1104)
Q Consensus 652 P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~-~G-~KMSKS~-GNvIdP~di 713 (1104)
-+++...|.||.... .+|-++ -.+....| -+..+.++... +| .|||||. ||.|+..|-
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia--~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~ 247 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYA--NDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHH--HHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC
T ss_pred CCcEEEeccChHHHHHHHHHHH--HHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecCC
Confidence 467888899996432 233332 22333335 46778899888 57 7999999 588876653
No 72
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=90.10 E-value=0.18 Score=57.87 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=38.8
Q ss_pred CcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCc-ccccc-CCCccCccc
Q 001303 654 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKS-LGNVIDPLE 712 (1104)
Q Consensus 654 d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~-KMSKS-~GNvIdP~d 712 (1104)
++...|.||.... ++|-++-- +....| .++.|.++...+|. ||||| .||.|+..|
T Consensus 226 ~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 226 CLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 3344599997543 45555543 333456 56789999999996 99999 899997765
No 73
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=89.72 E-value=0.18 Score=58.67 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=36.8
Q ss_pred CcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCcccc
Q 001303 654 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLEV 713 (1104)
Q Consensus 654 d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~di 713 (1104)
.+...|.||.... .+|-++ -.+....| .++.+.++...+| .|||||.|| .|+..|-
T Consensus 258 ~lVpvG~DQ~~~i~l~Rdla--~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 258 CLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp EEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTCC
T ss_pred eEEEeehhhHHHHHHHHHHH--HHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccCC
Confidence 4444699996432 222222 22223456 3578999999999 899999999 7877653
No 74
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=89.72 E-value=0.18 Score=57.98 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=25.3
Q ss_pred cccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCccc
Q 001303 655 VLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 655 ~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~d 712 (1104)
+...|.||.... .+|-++- .+....| .++.|.++.+.+| .|||||.+| .|+..|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAP--RLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTG--GGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred ecccccchHHHHHHHHHHHH--HcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 335799996433 2233322 2333345 4678999999999 799999998 787654
No 75
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=89.52 E-value=0.22 Score=57.30 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=37.6
Q ss_pred cCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCccc
Q 001303 653 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 712 (1104)
Q Consensus 653 ~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~d 712 (1104)
+++...|.||.... .+|-++- .+....| ..+.+.++...+| .|||||.+| .|+..|
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~--r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAE--SLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTG--GGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHHHHHHHHHHHH--HcCCCCC--eeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 45667799996432 3343332 2233455 4667899999999 599999998 886554
No 76
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=88.89 E-value=0.21 Score=57.56 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=39.7
Q ss_pred CcCcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccC-CCccCccc
Q 001303 652 PTSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSL-GNVIDPLE 712 (1104)
Q Consensus 652 P~d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~-GNvIdP~d 712 (1104)
-+++...|.||.... .+|-++-- +....| .++.|.++...+| .|||||. ||.|+..|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKA--LGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 456667899997543 34444433 333445 4568999999999 6999999 78897665
No 77
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=88.71 E-value=0.24 Score=58.50 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=37.0
Q ss_pred CcccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCC--ccccccCCC-ccCcccc
Q 001303 654 SVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLEV 713 (1104)
Q Consensus 654 d~~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G--~KMSKS~GN-vIdP~di 713 (1104)
.+...|.||.... .+|-++ -.+....|+ ++.+.++...+| .|||||.|| .|+..|-
T Consensus 305 ~~VpvG~DQ~~~i~l~Rdla--~r~~~~~p~--~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 305 CLIPCAIDQDPYFRMTRDVA--PRIGYPKPA--LLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp EEEEEEGGGHHHHHHHHHHG--GGGTCCCCE--EEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred eeEeccccHHHHHHHHHHHH--HHhCCCCce--eeecccccCCCCCccccCCCCCCCceeecCC
Confidence 4444699996432 222222 222334563 578899999999 899999999 7876653
No 78
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=88.62 E-value=0.67 Score=54.80 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=45.5
Q ss_pred cccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHH
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKEL 736 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~ 736 (1104)
+-|.|.+- ...+.+.+.-++.-..| ...-+++|++.+|+||||+.|++ ...++.+ .
T Consensus 216 iRG~D~l~-~tp~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~~-~l~~~r~---------~----------- 271 (488)
T 3afh_A 216 FRGEDHLS-NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGAT-SVEHFRR---------E----------- 271 (488)
T ss_dssp EEEGGGGG-GHHHHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSCC-BHHHHHH---------H-----------
T ss_pred EEchhhhh-CHHHHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCcc-cHHHHHH---------C-----------
Confidence 34666543 23334433334433445 44445899999999999999994 4444443 1
Q ss_pred HHHHhccCCCCCCCCCCCCchHHHHHHHhcc
Q 001303 737 EVAKKGQKADFPNGIPECGTDALRFALVSYT 767 (1104)
Q Consensus 737 ~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~ 767 (1104)
.|-++|+|-||+..+
T Consensus 272 ----------------G~~peal~n~l~~lG 286 (488)
T 3afh_A 272 ----------------GILSRALMNYLALLG 286 (488)
T ss_dssp ----------------TCCHHHHHHHHHHTT
T ss_pred ----------------CCCHHHHHHHHHHhC
Confidence 467899999988754
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=88.20 E-value=0.46 Score=60.38 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHcCCeeeee--------------ccccccccccc-CCCeeeeccccccccccchHHHHHHHhhhccCCC
Q 001303 472 KAREAVNEALKKKGLYRGAK--------------DNEMRLGLCSR-SNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 536 (1104)
Q Consensus 472 ~ar~~vi~~L~~~g~l~~~~--------------~~~~~~p~c~R-s~~~ie~~~~~QWFl~~~~~~~~~~~~v~~~~~~ 536 (1104)
+.-..+...|.++|++.... +.+...+.|+| ||.+++.+..+|||++++++++++++.+ +
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l---~-- 208 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDL---E-- 208 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTT---T--
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHh---h--
Confidence 34467888999999975421 12233578999 9999999999999999999999999998 3
Q ss_pred ceEEeccccHHHHHHHhc
Q 001303 537 KLELIPRQYTAEWRRWLE 554 (1104)
Q Consensus 537 ~i~~~P~~~~~~~~~wl~ 554 (1104)
... .|+..++...+||.
T Consensus 209 ~~~-~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 209 GLN-WPEKVKAMQRAWIG 225 (878)
T ss_dssp TCB-SCHHHHHHHHHHHC
T ss_pred hcC-CCHHHHHHHHHHhc
Confidence 334 89999998899996
No 80
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=88.01 E-value=0.38 Score=59.22 Aligned_cols=58 Identities=26% Similarity=0.228 Sum_probs=38.1
Q ss_pred CCcCcccccccccccH-HHHHHHHHHhhcCC-CCceEEEEccceeCC-CCc-cccccCC-CccCccc
Q 001303 651 YPTSVLETGHDILFFW-VARMVMLGIKLGGE-VPFTKVYLHPMIRDA-HGR-KMSKSLG-NVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~fW-~arm~~~~~~l~g~-~PFk~V~~Hg~v~D~-~G~-KMSKS~G-NvIdP~d 712 (1104)
|-+|+...|.||.... .+|-++-- +... -| .++.+++|.+. +|. |||||.| |.|+..|
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r--~n~~~~p--~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDL--IGRKLKP--VILSHHMLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--TTCCCCC--EEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEEeccccHHHHHHHHHHHHHH--hCCCCCc--eEeecCeeecCCCCCcCCCCCCCCCeeeccC
Confidence 4578888899996532 23333322 2222 13 46678999988 884 9999998 6787654
No 81
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=86.75 E-value=1.3 Score=50.85 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=45.7
Q ss_pred CcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHH
Q 001303 172 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 251 (1104)
Q Consensus 172 ~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~ 251 (1104)
.+|.|.++. -|||.|||||.++... ..++++ .|+++.+..|=.| ++- +..+. +. +
T Consensus 38 ~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D~h-a~t-------------~~~~~---~~---e 92 (394)
T 2dlc_X 38 RHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLADLH-AFL-------------DNMKA---PL---E 92 (394)
T ss_dssp SCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHH-HHH-------------TTTSS---CT---T
T ss_pred CCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcCCc-ccc-------------CCCCC---cH---H
Confidence 344444442 3399999999876543 444455 7888887766322 210 11100 01 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCc
Q 001303 252 EVWKWKDEYGGTILRQQRRLGASLDWSRE 280 (1104)
Q Consensus 252 ~~~~~~~~~~~~i~~ql~~lG~s~DW~r~ 280 (1104)
.+...+..+...+...|..+| +||++.
T Consensus 93 ~~~~~~~~~~~~i~~~l~a~G--ldp~k~ 119 (394)
T 2dlc_X 93 VVNYRAKYYELTIKAILRSIN--VPIEKL 119 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--CCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CChhHc
Confidence 233455556666777788888 466563
No 82
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=85.51 E-value=0.47 Score=52.53 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=17.7
Q ss_pred ccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCc
Q 001303 658 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 707 (1104)
Q Consensus 658 ~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNv 707 (1104)
-|.|.+- -..+.+.+.-++ |. |+-.+.-+++|++.+|+|||||.||+
T Consensus 190 rG~D~l~-~t~~q~~l~~al-G~-~~p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 190 RGADLIE-PTVRQISLYQLF-GW-KVPDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEGGGHH-HHHHHHHHHHHH-TC-CCCEEEEECBCCC-------------
T ss_pred eCccccc-cHHHHHHHHHHc-CC-CCCeEEEeeeeECCCCCcccccCCcc
Confidence 3777653 223333322233 32 22466777899899999999999998
No 83
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=85.19 E-value=0.72 Score=57.61 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=43.0
Q ss_pred EEEEccceeCCCCccccccCCCc------cCccccccccCchhHHHHhhcCCCChHHHHHHHhccCCCCCCCCCCCCchH
Q 001303 685 KVYLHPMIRDAHGRKMSKSLGNV------IDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDA 758 (1104)
Q Consensus 685 ~V~~Hg~v~D~~G~KMSKS~GNv------IdP~dii~g~~l~~l~~~l~~~~l~~~e~~~a~~~~~~~fp~~i~~yGaDa 758 (1104)
..+-+|++. .+|.|||||+||. |+--|=-.-.++.+|+.+ .|.+++
T Consensus 294 ~~~~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~r---------------------------Gy~PeA 345 (851)
T 2hz7_A 294 HQYEFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRL---------------------------GVTPEA 345 (851)
T ss_dssp EEEEECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHH---------------------------TCCHHH
T ss_pred CceEEEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHc---------------------------CCCHHH
Confidence 455667764 7999999999873 211111111234444443 688999
Q ss_pred HHHHHHhccCcccccccchHHHHH
Q 001303 759 LRFALVSYTAQSDKINLDIQRVVG 782 (1104)
Q Consensus 759 lR~~L~~~~~~~~di~f~~~~i~~ 782 (1104)
+|.||+..+-...+..+++..+..
T Consensus 346 Ir~fl~~lG~s~~~~~~e~~~le~ 369 (851)
T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYEN 369 (851)
T ss_dssp HHHHHHHSCCCSSCEEECHHHHHH
T ss_pred HHHHHHhcCCCCCcccccHHHHHH
Confidence 999998876544455566666554
No 84
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=84.96 E-value=0.66 Score=53.06 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=43.9
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCChHHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 253 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Glp~q~~vek~l~~~~g~~~~~~~re~f~~~~ 253 (1104)
+.+.+| --|||.|||||.+..+ -.+.++++ .|+++.+..|=.| ++ +....|.+ .+.+
T Consensus 34 ~~vy~G-~~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD~h-a~---------~~~~~g~~---------~e~i 90 (375)
T 2cyc_A 34 LQHYIG-FEISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLADWH-SW---------INDKLGGD---------LEVI 90 (375)
T ss_dssp CBEEEE-ECCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEECHHH-HH---------HTTGGGGC---------HHHH
T ss_pred cEEEeC-CCCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEecCcE-EE---------cCCCCCCC---------HHHH
Confidence 344444 2458999999944422 23445555 5899887776433 21 10111112 2345
Q ss_pred HHHH-HHHHHHHHHHHHHhcccc
Q 001303 254 WKWK-DEYGGTILRQQRRLGASL 275 (1104)
Q Consensus 254 ~~~~-~~~~~~i~~ql~~lG~s~ 275 (1104)
++++ .++...+..++..+|+..
T Consensus 91 ~~~~~~~~~~~~~~~~la~G~dp 113 (375)
T 2cyc_A 91 QEVALKYFKVGMEKSIEVMGGDP 113 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 5666 556556667788888643
No 85
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=84.92 E-value=0.58 Score=56.66 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=46.0
Q ss_pred cccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHH
Q 001303 657 ETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKEL 736 (1104)
Q Consensus 657 ~~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~ 736 (1104)
+-|.|.+- ...+.+.+.-++.-..| ...-+++|++.+|+||||+.|| +...++.+ .
T Consensus 320 irG~D~~~-~t~~q~~l~~alg~~~P--~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~---------~----------- 375 (592)
T 3al0_C 320 FRGEDHLS-NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRR---------E----------- 375 (592)
T ss_dssp CEEGGGGG-GHHHHHHHHTTTTCCCC--BCCEECCCBCTTSSBCCTTTCS-SBHHHHHH---------T-----------
T ss_pred EEchhhHh-CHHHHHHHHHHhCCCCC--eEEEeeeeeCCCCCcccccCCc-ccHHHHHH---------C-----------
Confidence 34666543 34444444444433344 3444588999999999999999 45555544 1
Q ss_pred HHHHhccCCCCCCCCCCCCchHHHHHHHhcc
Q 001303 737 EVAKKGQKADFPNGIPECGTDALRFALVSYT 767 (1104)
Q Consensus 737 ~~a~~~~~~~fp~~i~~yGaDalR~~L~~~~ 767 (1104)
.|-++|+|-||+..+
T Consensus 376 ----------------G~~peal~~~l~~lG 390 (592)
T 3al0_C 376 ----------------GILSRALMNYLALLG 390 (592)
T ss_dssp ----------------TCCHHHHHHHHTTTT
T ss_pred ----------------CCCHHHHHHHHHHhC
Confidence 477899999988754
No 86
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=84.48 E-value=0.7 Score=52.19 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=37.7
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhh-cCC-CCceEEEEc---cceeCC-CC-ccccccCC---CccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKL-GGE-VPFTKVYLH---PMIRDA-HG-RKMSKSLG---NVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l-~g~-~PFk~V~~H---g~v~D~-~G-~KMSKS~G---NvIdP~d 712 (1104)
|-+|+...|.||... =.+|-++--+.. .|+ .|-...+++ .++.+. +| +|||||.+ |.|...|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 456788889999854 456666644331 121 121244444 456666 67 59999997 6776554
No 87
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=82.62 E-value=0.36 Score=54.48 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=38.9
Q ss_pred CCcCccccccccccc-HHHHHHHHHHhh-cC----CCCceEEEE---ccceeCC-CC-ccccccC---CCccCccc
Q 001303 651 YPTSVLETGHDILFF-WVARMVMLGIKL-GG----EVPFTKVYL---HPMIRDA-HG-RKMSKSL---GNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~f-W~arm~~~~~~l-~g----~~PFk~V~~---Hg~v~D~-~G-~KMSKS~---GNvIdP~d 712 (1104)
|-+|+...|.||... =++|-++--+.. .| ..|-...++ +.++... +| +|||||. ||.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 457788889999864 466776654331 23 112123333 4567666 57 6999999 78887654
No 88
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=82.00 E-value=2 Score=47.96 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=25.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
++.+.+|. -|||.|||||+.. +. .+.++++ .|+++.+..|=
T Consensus 32 ~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~lq~-~g~~~~~~i~D 72 (323)
T 2cyb_A 32 KPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDLQE-AGFEIIVLLAD 72 (323)
T ss_dssp CCEEEEEE-CCCSCCBHHHHHH-HH--HHHHHHH-TTCEEEEEECH
T ss_pred CCEEEECc-CCCCcchHHHHHH-HH--HHHHHHH-CCCcEEEEECC
Confidence 45555554 4799999999532 22 3444444 48888776653
No 89
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=81.18 E-value=0.55 Score=54.78 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=34.2
Q ss_pred ccccccccccH-HHHHHHHHHhhcCCCCceEEEEccceeCCCCc--cccccCCC-ccCcc
Q 001303 656 LETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSLGN-VIDPL 711 (1104)
Q Consensus 656 ~~~G~Dil~fW-~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~--KMSKS~GN-vIdP~ 711 (1104)
...|.||.+.. ++|-++.- +....| .++.|.++.+.+|. |||||.+| .|...
T Consensus 291 VPvG~DQ~~hlel~Rdia~r--fn~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~ 346 (451)
T 3foc_A 291 IASGIEQDPYFRLARDLAPR--MGHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYLT 346 (451)
T ss_dssp EEECTTTHHHHHHHHHHTTT--TTSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBTT
T ss_pred eeeecchHHHHHHHHHHHHH--hCCCCC--eeecCCcccCCCCCCCccCCCCCCCeeeec
Confidence 34599997654 44554432 222234 46778899888886 99999998 56543
No 90
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=77.89 E-value=4.2 Score=46.33 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=26.9
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
..|.++.- |||.|||||.++... ..++++ .|+++.+..|
T Consensus 36 ~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 36 LKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 35555544 799999999876544 444455 7888877766
No 91
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=77.57 E-value=1.6 Score=50.09 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCcCcccccccccc-cHHHHHHHHHHhh-cCC-CCceEEEEc---cceeCC-CC-ccccccC---CCccCccc
Q 001303 651 YPTSVLETGHDILF-FWVARMVMLGIKL-GGE-VPFTKVYLH---PMIRDA-HG-RKMSKSL---GNVIDPLE 712 (1104)
Q Consensus 651 ~P~d~~~~G~Dil~-fW~arm~~~~~~l-~g~-~PFk~V~~H---g~v~D~-~G-~KMSKS~---GNvIdP~d 712 (1104)
|-+|+...|.||.. +=++|-++--+.. .|+ .+...-+++ ..|.+. +| +|||||. ||.|...|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 56788888999985 4456666644332 221 221233343 344444 33 7999999 89997654
No 92
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=76.90 E-value=5.3 Score=47.08 Aligned_cols=70 Identities=29% Similarity=0.338 Sum_probs=44.6
Q ss_pred ccccccccHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCCccCccccccccCchhHHHHhhcCCCChHHHH
Q 001303 658 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELE 737 (1104)
Q Consensus 658 ~G~Dil~fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GNvIdP~dii~g~~l~~l~~~l~~~~l~~~e~~ 737 (1104)
=|-|.+- --.+.+.+--+|.-..| ...-+++|++.+|+||||+.|.+ ++.+++..
T Consensus 226 RG~D~l~-~tprq~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~~----------sl~~~r~~------------ 280 (490)
T 4g6z_A 226 RGDDHVN-NTPRQINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGAM----------SVMGYRDA------------ 280 (490)
T ss_dssp EEGGGGG-GHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTCC----------BHHHHHHT------------
T ss_pred ecccccc-ChHHHHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCCc----------CHHHHHHC------------
Confidence 3555443 23344444444444556 44455899999999999999862 23333332
Q ss_pred HHHhccCCCCCCCCCCCCchHHHHHHHhcc
Q 001303 738 VAKKGQKADFPNGIPECGTDALRFALVSYT 767 (1104)
Q Consensus 738 ~a~~~~~~~fp~~i~~yGaDalR~~L~~~~ 767 (1104)
.|.++|++=||+..+
T Consensus 281 ---------------G~~peal~n~l~~lG 295 (490)
T 4g6z_A 281 ---------------GYLPEAVLNYLARLG 295 (490)
T ss_dssp ---------------TCCHHHHHHHHHTSS
T ss_pred ---------------CCCHHHHHHHHHHhC
Confidence 688999999998764
No 93
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=76.54 E-value=1.6 Score=49.73 Aligned_cols=59 Identities=22% Similarity=0.097 Sum_probs=38.1
Q ss_pred cCcccccccccc-cHHHHHHHHHHhhcCCCCceEEEEccceeCCCCccccccCCC-ccCcc
Q 001303 653 TSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN-VIDPL 711 (1104)
Q Consensus 653 ~d~~~~G~Dil~-fW~arm~~~~~~l~g~~PFk~V~~Hg~v~D~~G~KMSKS~GN-vIdP~ 711 (1104)
+.+.-.|.||.. +=++|-++--+.-.-..|......|.++-..+|+|||||.+| .|...
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTT
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccC
Confidence 345556999975 456666664332111234346777888888899999999854 56543
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.31 E-value=5.1 Score=36.72 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCccc---c------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINA----PGYQE---K------VPSRI-QEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n----~~f~~---k------aP~~v-~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
.++..+++.|+.+.+++.++++.|+.+|.+ ..|-. | -|... .+..++.++.|++|++++.+.+..|
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888877766 45522 1 23333 2456788899999999999999988
Q ss_pred hcC
Q 001303 1101 GNS 1103 (1104)
Q Consensus 1101 ~~~ 1103 (1104)
+..
T Consensus 95 Eeg 97 (100)
T 1go4_E 95 ERG 97 (100)
T ss_dssp C--
T ss_pred hcc
Confidence 763
No 95
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=74.56 E-value=2.4 Score=48.48 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=22.9
Q ss_pred EEEccceeCCCC------------------ccccccC-CCccCcccc
Q 001303 686 VYLHPMIRDAHG------------------RKMSKSL-GNVIDPLEV 713 (1104)
Q Consensus 686 V~~Hg~v~D~~G------------------~KMSKS~-GNvIdP~di 713 (1104)
++.|++|.+.+| +|||||. ||.|+..|-
T Consensus 220 ~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~ 266 (375)
T 2cyc_A 220 AVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDS 266 (375)
T ss_dssp EEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCC
T ss_pred EeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCC
Confidence 566889999988 8999999 788876653
No 96
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.14 E-value=15 Score=32.60 Aligned_cols=51 Identities=6% Similarity=0.052 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHH
Q 001303 1036 DIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEID 1091 (1104)
Q Consensus 1036 d~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~ 1091 (1104)
.+.++++.|+.++..++++++.++..|+++. |..+++..-++|-+|.+=..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-----~~~~~~~hI~~Lh~YNeiKD 55 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRD-----AKQTVQKHIDLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHhHHHH
Confidence 3578899999999999999999999998653 88899999999988865433
No 97
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=71.54 E-value=1.4 Score=50.36 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=37.4
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 157 WENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 157 W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
|-..|+|=...+ +.+++|+|.+|. -|||.|||||.+.. + -.++..-.|++|.+..+=+|
T Consensus 46 ~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~-~PTG~lHLGhyv~~-~---~~~~lq~~~~~~~~~IaD~h 112 (372)
T 3a04_A 46 LMRRGIIFGHRDFDKILEAKARGERVAVLTGF-MPSGKFHFGHKLTV-D---QLIYLQKNGFKVFVAIADAE 112 (372)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE-CCCSCCBHHHHHHH-H---HHHHHHHTTCEEEEEECHHH
T ss_pred hhccceeeeccCHHHHHHHHHcCCCCEEEeCc-CCCcHhHHHHHHHH-H---HHHHHHhCCCeEEEEEecch
Confidence 566787744332 244567777664 56999999998743 2 23444446999987766433
No 98
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=71.23 E-value=1.3 Score=49.65 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcCC
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 223 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~Gl 223 (1104)
|||.|||||.++.+.. +.++++ |+++.+..| |-|++
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~ 47 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAM 47 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHT
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeee
Confidence 5899999998865443 455665 999888776 43443
No 99
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=70.91 E-value=13 Score=33.96 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CcCc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1040 EREKIRTKLTETQKQREKLEKIIN----APGY--QEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1040 E~~kL~kkl~kl~k~i~~l~~kl~----n~~f--~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+.+|++++++..+..+.+.++.. ||.| ...+ +.-......++..++.++.+++..|+.++.
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444455555544 5888 4455 555666778889999999999998888764
No 100
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=65.29 E-value=2.5 Score=47.34 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
|||.|||||.+..+. -+.+++. |+++.+..|
T Consensus 10 PTG~lHlGn~vg~l~--~~~~lQ~--g~~~~~~Ia 40 (328)
T 1i6k_A 10 PSGVITIGNYIGALR--QFVELQH--EYNCYFCIV 40 (328)
T ss_dssp CCSCCBHHHHHHTHH--HHHHHTT--TSEEEEEEC
T ss_pred CCCcccHHHHHHHHH--HHHHHHc--CCcEEEEEe
Confidence 489999999886652 2223433 999888776
No 101
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=65.24 E-value=6.7 Score=44.95 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
.+...|+|....+ ..+++|++.+|.= |||.|||||.+.... ..+++...|..|.+..|=+|
T Consensus 48 ~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~IaD~h 116 (392)
T 3jxe_A 48 IFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQITDDE 116 (392)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEECHHH
T ss_pred HHHhCcCcccccCHHHHHHHHhcCCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEecchH
Confidence 3445677643322 2345566676653 679999999886541 12234436998888877333
No 102
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=63.89 E-value=8.8 Score=44.00 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 157 WENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 157 W~~~~~f~~~~~--------~~k~~f~i~~pPPy~n-G~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
+...|+|....+ ..+++|.+.+|. -|| |.|||||..... .+.++++.-|..|.+..|=+
T Consensus 50 l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D~ 117 (393)
T 3hv0_A 50 FFRRNIFLSHRDFEKILDVYEKGELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLTDD 117 (393)
T ss_dssp HHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEECHH
T ss_pred HHhCCCccccCCHHHHHHHHhcCCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeeccCh
Confidence 345677644322 233456666664 457 789999966544 34556777677777765544
No 103
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=62.98 E-value=13 Score=42.42 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
.+...|+|....+ ..+++|.+.+|. -|||.|||||.... .++.+++..-|..+.+..|-
T Consensus 57 ~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D 123 (386)
T 3hzr_A 57 HYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQILD 123 (386)
T ss_dssp HHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEECH
T ss_pred HHHHCcCccccccHHHHHHHHhcCCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeCc
Confidence 4556777754332 234567777774 57999999997764 22334566568888777543
No 104
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=60.98 E-value=7.6 Score=47.79 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=29.1
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHH-HHHHHHHHCCCeeeEeccCCCcCC
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQD-TIIRWRRMSGYNALWVPGMDHAGI 223 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D-~~~Ry~rm~G~~Vl~~~G~D~~Gl 223 (1104)
++.|.+|. -|||.||||| .++.- .+.++++ .|++|.+..| |-||+
T Consensus 40 ~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 45666553 4689999999 23322 2445554 5999888777 55665
No 105
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=60.16 E-value=6.5 Score=45.09 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=23.6
Q ss_pred CCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 183 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 183 ~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
|||. |||||.+. + -.+.++++ .|+++++..|=.|
T Consensus 73 PTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIgD~h 107 (392)
T 1y42_X 73 PTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIGGST 107 (392)
T ss_dssp CCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEECTTT
T ss_pred CCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEcCce
Confidence 4898 99999773 2 23556654 4999988877433
No 106
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=59.33 E-value=3.5 Score=46.36 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=21.9
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCC-CeeeEeccC
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSG-YNALWVPGM 218 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G-~~Vl~~~G~ 218 (1104)
|||.|||||.+..+ --+.++++ .| +++.+..|=
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~IaD 43 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIVD 43 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEECG
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEeC
Confidence 58999999988653 22334554 36 888776663
No 107
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=58.90 E-value=5.5 Score=45.09 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=27.0
Q ss_pred EEEECCCCCCCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 174 FVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 174 f~i~~pPPy~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
+.|.+|. -|||. ||||| +..+. .+.++++ .|+++.+..|=.|
T Consensus 47 ~~vy~G~-~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIaD~h 89 (356)
T 2pid_A 47 QTIYCGF-DPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVGGAT 89 (356)
T ss_dssp CEEEEEE-CCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEECTTG
T ss_pred CEEEEee-cCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEccce
Confidence 4455443 35896 99999 44333 3566665 5999988877444
No 108
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=58.86 E-value=6.6 Score=45.04 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=38.8
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
.+...|+|-...+ ..+++|.+.+|. -||| .|||||.... ..+.+++..-|..+..+.|=++
T Consensus 53 ~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~ 122 (395)
T 3i05_A 53 HFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE 122 (395)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH
T ss_pred HHHhcCCccccccHHHHHHHHhcCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH
Confidence 4556787744322 234567777774 5799 7999997654 2344566666887777766444
No 109
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=57.20 E-value=6.4 Score=44.71 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=24.6
Q ss_pred EEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 174 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 174 f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
+.+.+|. -|||.||||| +..+ -.+.++++ .|+++.+..|
T Consensus 36 ~~iy~G~-~PTg~lHlG~-l~~l--~~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 36 IKGYIGY-EPSGVAHIGW-LVWM--YKVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CEEEEEE-CCCSSCBTHH-HHHH--HHHHHHHH-TTCEEEEEEC
T ss_pred CEEEecc-CCCCCccHhH-HHHH--HHHHHHHH-CCCCEEEEEe
Confidence 4444442 4489999999 4433 22344444 5999888777
No 110
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=56.23 E-value=6.6 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=25.2
Q ss_pred EEEECCCCCCCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 174 FVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 174 f~i~~pPPy~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
+.+.+|. -|||. |||||.+. --.+.++++ .|+++++..|=
T Consensus 34 ~~vy~G~-~PTg~slHlGh~l~---l~~~~~lQ~-~g~~~~~~i~D 74 (322)
T 2yxn_A 34 IALVCGF-DPTADSLHLGHLVP---LLCLKRFQQ-AGHKPVALVGG 74 (322)
T ss_dssp CEEEEEE-CCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEECT
T ss_pred CEEEEee-cCCCCcccHHHHHH---HHHHHHHHH-cCCcEEEEEcc
Confidence 3344442 34898 99999662 223455554 48999888773
No 111
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=55.23 E-value=8 Score=44.71 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 183 VTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 183 ~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
|||. |||||.+. --.+.++++ .|+++.+..|=.|
T Consensus 39 PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIgd~t 73 (419)
T 2ts1_A 39 PTADSLHIGHLAT---ILTMRRFQQ-AGHRPIALVGGAT 73 (419)
T ss_dssp CSSSSCBGGGHHH---HHHHHHHHH-TTCEEEEEECTTG
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEcCce
Confidence 4898 99999662 223455554 5999998887444
No 112
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=55.18 E-value=23 Score=40.88 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=48.0
Q ss_pred EEecc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1030 YLKVE-VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1030 ~l~l~-vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
.+.+. +|+++.++.|+.+++++++++++++.++. +-|.. ++.+.|+.+++++++..++.+...
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIE------KRPEN--KKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCTTC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhh------hCccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445 89999999999999999999999999984 22222 555677777888887777776654
No 113
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=54.60 E-value=7.6 Score=45.05 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=25.3
Q ss_pred EEEECCCCCCCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 174 FVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 174 f~i~~pPPy~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
+.+.+| --|||. ||||| +..+. .+.++++ .|+++++..|=
T Consensus 33 ~~iy~G-~dPTg~sLHLGh-lv~l~--~l~~lQ~-~G~~~i~lIgD 73 (432)
T 2jan_A 33 MTVYAG-FDPTAPSLHAGH-LVPLL--TLRRFQR-AGHRPIVLAGG 73 (432)
T ss_dssp CEEEEE-ECCSSSSCBGGG-HHHHH--HHHHHHH-TTCEEEEEECH
T ss_pred CEEEEe-eCCCCCCcCHHH-HHHHH--HHHHHHH-CCCcEEEEEcC
Confidence 344444 235894 99999 43332 3566664 59999988773
No 114
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=53.62 E-value=7.1 Score=43.91 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=26.0
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
+.+.+-..| ||.|||||.+..+. -+.+++ -.|+++.+..|
T Consensus 13 ~~v~~G~~P--TG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~Ia 52 (340)
T 2g36_A 13 MRILSGMRP--TGKLHIGHLVGALE--NWVKLQ-EEGNECFYFVA 52 (340)
T ss_dssp CEEEEEECC--CSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CeEEEeeCC--CCcccHHhHHHHHH--HHHHHH-HCCCCEEEEEe
Confidence 344455455 79999999887431 333444 35899888775
No 115
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=53.03 E-value=4.3 Score=45.85 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=21.8
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
|||.|||||.+..+ --+.+++. |+++.+..|=
T Consensus 13 PTG~lHLGn~vg~l--~~~~~lQ~--~~~~~~~IaD 44 (348)
T 2yy5_A 13 ASGKQHLGNYLGVM--QSLIELQE--QCQLFVFVAD 44 (348)
T ss_dssp CCTTCBHHHHHHTG--GGHHHHHH--HSEEEEEECH
T ss_pred CCCcccHHHHHHHH--HHHHHHHh--CCcEEEEEcC
Confidence 47999999988654 22235554 7888776663
No 116
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=52.94 E-value=7.8 Score=45.00 Aligned_cols=58 Identities=10% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~n-G~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
.+...|+|....+ ..++++++.+|. -|| |.|||||.+.... +.+++.-.|+.+.+..|
T Consensus 77 ~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 77 HFLRKGLFFSERDFTKILDLYEQGKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHHTCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred HHHhCCCcccCCCHHHHHHHHhcCCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 3455677655432 123456666664 357 8999999886542 33556546888888777
No 117
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=52.91 E-value=4.3 Score=45.16 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 184 TGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 184 nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
||.||||| +..+ -.+.++++ .|+++.+..|=+|
T Consensus 38 Tg~lHlGh-l~~l--~~~~~lQ~-~g~~~~~~i~D~~ 70 (314)
T 2zp1_A 38 SGKIHLGH-YLQI--KKMIDLQN-AGFDIIILLADLA 70 (314)
T ss_dssp CSSCBHHH-HHHH--HHHHHHHH-TTEEEEEEECHHH
T ss_pred CCCcchhh-HHHH--HHHHHHHH-CCCCEEEEEecce
Confidence 89999999 4433 23444444 4899888776443
No 118
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=52.61 E-value=8 Score=44.75 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=27.0
Q ss_pred EEEECCCCCCCCC-CCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 174 FVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 174 f~i~~pPPy~nG~-LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
+.+.+|. -|||. |||||.+. + -.+.++++ .|+++.+..|=.|
T Consensus 33 ~~iy~G~-dPTg~sLHlGh~v~--l-~~~~~lQ~-~G~~~~~lIgd~t 75 (420)
T 1jil_A 33 VTLYCGA-DPTADSLHIGHLLP--F-LTLRRFQE-HGHRPIVLIGGGT 75 (420)
T ss_dssp CEEEEEE-CCSSSSCBHHHHHH--H-HHHHHHHH-TTCEEEEEECTTG
T ss_pred CEEEEee-CCCCCCccHHHHHH--H-HHHHHHHH-CCCcEEEEEcCce
Confidence 3444442 35898 99999662 2 23455554 5999998887444
No 119
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=51.62 E-value=8.8 Score=43.27 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=27.3
Q ss_pred cEEEECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 173 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 173 ~f~i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
++++.+|. -|||.|||||.+..+ -.+.++++ .|+++.+..|=.|
T Consensus 40 ~~~vy~G~-~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~D~~ 83 (348)
T 2j5b_A 40 IFTAYNGF-EPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIADWF 83 (348)
T ss_dssp CEEEEEEE-CCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEECHHH
T ss_pred CCEEEecc-CCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEeccch
Confidence 45555554 567999999933222 33445555 4899887776333
No 120
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=50.09 E-value=9.1 Score=43.57 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEECCCCCCCCCCCcchhHHhHHHH-HHHHHHHHCCCeeeEeccCCCcC
Q 001303 175 VIVLPPPNVTGALHIGHALTTAIQD-TIIRWRRMSGYNALWVPGMDHAG 222 (1104)
Q Consensus 175 ~i~~pPPy~nG~LHiGHal~~~i~D-~~~Ry~rm~G~~Vl~~~G~D~~G 222 (1104)
.|.+|. -|||.||||| .++.= .+.++++ .|+.|.+..| |-||
T Consensus 58 ~iy~G~-~PTg~lHlG~---gvl~~~~~~~lQ~-~G~~~~~lIa-D~ha 100 (373)
T 3vgj_A 58 ICYDGF-EPSGRMHIAQ---GLLKSIIVNKLTS-NGCTFIFWIA-DWFA 100 (373)
T ss_dssp EEEEEE-CCCSSCBHHH---HHHHHHHHHHHHT-TTCEEEEEEC-HHHH
T ss_pred eEEeCC-CCCCCceehh---hHHHHHHHHHHHH-CCCcEEEEEe-ccee
Confidence 344442 3579999999 23332 2455554 5999888777 4343
No 121
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=49.99 E-value=9.6 Score=44.24 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=27.2
Q ss_pred cEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 173 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 173 ~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
++.+.+|. -||| +|||||.+. --.+.+++. .|+++.+..|=.|
T Consensus 37 ~~~vy~G~-dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIgD~t 80 (432)
T 1h3f_A 37 PLTVKLGA-DPTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIGDFT 80 (432)
T ss_dssp CCEEEEEE-CTTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEECCCC
T ss_pred CcEEEEcc-cCCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEccce
Confidence 34444442 3588 599999772 234455554 5999988887444
No 122
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=48.25 E-value=10 Score=44.60 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 220 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~n-G~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~ 220 (1104)
.+...|+|....+ ..+++|.+.+|. -|| |.|||||.+.... +.++++-.|.++.+..|=+|
T Consensus 130 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~ 199 (477)
T 1r6t_A 130 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE 199 (477)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH
T ss_pred HHHhCCCccccCCHHHHHHHHhcCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce
Confidence 4556777765432 134567777774 357 8999999887542 33455546888877776433
No 123
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=47.42 E-value=17 Score=41.89 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCCC-CCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 219 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG-~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D 219 (1104)
.+...|+|-...+ ..+++|.+.+|. -||| .|||||.... ..+.+++..-|..+.+..|=+
T Consensus 76 ~~~~RG~i~~~~d~~~ll~~~~~~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~IaD~ 144 (406)
T 3tze_A 76 YFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQITDD 144 (406)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEECHH
T ss_pred HHHhCCCeeccccHHHHHHHHhcCCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEeeCh
Confidence 3456677644322 234567777774 5688 8999997754 233335666587777765533
No 124
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=46.28 E-value=9.9 Score=44.16 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~n-G~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
.+...|+|....+ ..++++.+.+|. -|| |.|||||.+.... +.+++.-.|.++.+..|=
T Consensus 83 ~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD 150 (437)
T 1r6u_A 83 HFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD 150 (437)
T ss_dssp HHHHHTSEEEEESHHHHHHHHTTTCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH
T ss_pred HHHhCCCccCCCCHHHHHHHHhcCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec
Confidence 3455677655332 234567777774 357 8999999886542 334555468888777764
No 125
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=44.19 E-value=65 Score=29.45 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
....+..++..++.++.-|++++--+.+ +|+..+..-..|+.+|+.++.+++..+..+..
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~------~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVRE------IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888888865554 48889999999999999999999998877653
No 126
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.94 E-value=30 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKI 1061 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~k 1061 (1104)
+++||++-++++.++++.+..|++-
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777776666654
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.20 E-value=30 Score=33.60 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
+++.-|+-+++.+.+.++.+++.+.+.+.+=.-.-..-....+.-++++++++.++..++..+..|+
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333311000001111234444555556666666666655554
No 128
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=41.98 E-value=5.2 Score=45.01 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEecc
Q 001303 183 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 217 (1104)
Q Consensus 183 ~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G 217 (1104)
|||.|||||.++.+- -+.+++. |+++.+..+
T Consensus 15 PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia 45 (341)
T 3sz3_A 15 PSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV 45 (341)
T ss_dssp SSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred CCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe
Confidence 589999999886441 2334454 578777666
No 129
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=41.91 E-value=8.8 Score=43.33 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=19.2
Q ss_pred CCCCCcchhHHhHHHHHHHHHHHHC-CCeeeEecc
Q 001303 184 TGALHIGHALTTAIQDTIIRWRRMS-GYNALWVPG 217 (1104)
Q Consensus 184 nG~LHiGHal~~~i~D~~~Ry~rm~-G~~Vl~~~G 217 (1104)
||.|||||.+..+ ..|.+++ .+++.+..|
T Consensus 32 TG~lHLGn~~g~l-----~~~~~lQ~~~~~~~~Ia 61 (351)
T 1yi8_B 32 TGALHLGHLAGSL-----QNRVRLQDEAELFVLLA 61 (351)
T ss_dssp SSCCBHHHHHHTH-----HHHHHHTSSSEEEEEEC
T ss_pred CCCccHHHHHHHH-----HHHHHHHHhCCeEEEEe
Confidence 8999999988753 2343332 377766665
No 130
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=41.71 E-value=9.1 Score=43.76 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=26.2
Q ss_pred EECCCCCCCCCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccCCCcC
Q 001303 176 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 222 (1104)
Q Consensus 176 i~~pPPy~nG~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~D~~G 222 (1104)
|.+|. -|||.|||||.++.+.+ +.+++ .|++|.+..+ |-|+
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hA 78 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHA 78 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHH
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-ccee
Confidence 56553 46899999998765431 22333 4999877665 4443
No 131
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=41.22 E-value=24 Score=34.76 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=15.5
Q ss_pred HHHhcCc-EEEccEeeeecCCCCccccc
Q 001303 298 RLYKEGL-IYRDLRLVNWDCVLRTAISD 324 (1104)
Q Consensus 298 ~L~~~Gl-Iyr~~~~v~wcp~~~TaLsd 324 (1104)
.+..+|- +.--..+-.|||.|..-+..
T Consensus 28 d~~~~Gk~vvl~f~~~~~cp~C~~e~~~ 55 (164)
T 4gqc_A 28 EVLKRGRPAVLIFFPAAFSPVCTKELCT 55 (164)
T ss_dssp HHHHTSSCEEEEECSCTTCCEECSSCEE
T ss_pred HHhcCCCEEEEEEeCCCCCCCcccchhh
Confidence 3444552 33333445689999876554
No 132
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=35.49 E-value=1.5e+02 Score=27.15 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHH
Q 001303 1047 KLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQE 1089 (1104)
Q Consensus 1047 kl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~e 1089 (1104)
-+..++.-+-.+++.|..+.|..+++++.++..+.++.+++.-
T Consensus 10 akN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~w 52 (113)
T 3lof_A 10 AKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISW 52 (113)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHH
Confidence 4457777778888889877799999999888888877766543
No 133
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.20 E-value=1.3e+02 Score=27.33 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1097 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l 1097 (1104)
...+..++..+++++.-|++++--+. .+|+..+..-..|+.+|+.++.+++..+
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r------~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELR------YAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567777888888888888775544 3599999999999999999999988754
No 134
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=34.17 E-value=8 Score=43.54 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=20.1
Q ss_pred CCCCCCCcchhHHhHHHHHHHHHHH-HCCCeeeEecc
Q 001303 182 NVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPG 217 (1104)
Q Consensus 182 y~nG~LHiGHal~~~i~D~~~Ry~r-m~G~~Vl~~~G 217 (1104)
-|||.|||||.++.+ ..|.+ ..|+++.+..+
T Consensus 23 ~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia 54 (346)
T 3n9i_A 23 QPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV 54 (346)
T ss_dssp CSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC
T ss_pred CCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe
Confidence 348999999987653 22222 24688776665
No 135
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.72 E-value=70 Score=28.98 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCccccC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 001303 1039 AEREKIRTKLTETQKQREKLEKIINAPGYQEKV--PSRIQEDNAAKLAKLLQEIDF-FENESNRLG 1101 (1104)
Q Consensus 1039 ~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~ka--P~~v~e~~~~Kl~~~~~el~~-i~~~l~~l~ 1101 (1104)
.-+..++..++.+..-|++++--+. .+ |+..+..-..|+.+|+.++.+ ++..+..|.
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~------~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVN------NSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666777777777777765544 35 999999999999999999999 999888774
No 136
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=33.26 E-value=92 Score=36.83 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCCCceEEEEccceeCCCCccccccCCCc
Q 001303 679 GEVPFTKVYLHPMIRDAHGRKMSKSLGNV 707 (1104)
Q Consensus 679 g~~PFk~V~~Hg~v~D~~G~KMSKS~GNv 707 (1104)
-..| ...-|++|++.+|+|+||+.|..
T Consensus 255 ~~~P--~y~H~pli~~~~g~kLSKR~~~~ 281 (512)
T 4gri_A 255 WKPP--IYCHLPMVMGNDGQKLSKRHGST 281 (512)
T ss_dssp CCCC--EEEEECCCBCTTSSBCCTTTSCC
T ss_pred CCCC--eEEecchhccccccccCcccccc
Confidence 3445 56667999999999999998764
No 137
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.20 E-value=1e+02 Score=28.12 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+.|+.-|++++..++.++++++..|..- ....+.......+.+.+.+.+...|..|+.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-------~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS-------EDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45677777777777777777777766621 223344566677788888888888887763
No 138
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=31.38 E-value=28 Score=40.46 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=37.0
Q ss_pred HHHhcCCcccCCC--------CCCCcEEEECCCCCCC-CCCCcchhHHhHHHHHHHHHHHHCCCeeeEeccC
Q 001303 156 WWENSGYFIADNK--------SSKPSFVIVLPPPNVT-GALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 218 (1104)
Q Consensus 156 ~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~n-G~LHiGHal~~~i~D~~~Ry~rm~G~~Vl~~~G~ 218 (1104)
.+...|+|....+ ..+++|++.+|. -|| |.|||||..... .+.+++..-|..+.+..|-
T Consensus 66 ~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~IgD 133 (451)
T 3foc_A 66 PMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQITD 133 (451)
T ss_dssp HHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEECH
T ss_pred HHHhCCCccccccHHHHHHHHhcCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccCceEEEEeeC
Confidence 4456677644322 234567888775 457 899999976543 2344666668888776553
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.98 E-value=99 Score=40.05 Aligned_cols=55 Identities=18% Similarity=0.412 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
++.|++.|++++.++.++.+.++.++. +..+.-++|+.++++|...+++++.+|+
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~----------~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWAD----------KYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544443 2334555777778888877777776665
No 140
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.52 E-value=1.4e+02 Score=27.37 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
.|.+.-+..|+++++.+...++.+++++.
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766554
No 141
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.15 E-value=1.7e+02 Score=26.67 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcccc----C-------C----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEK----V-------P----SRIQEDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~k----a-------P----~~v~e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
..++.+|..++..++.+++.+++.+. +.++ = . .++++..+.++.++..++..+.+.+..++
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~---~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIE---ELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666665555554 2122 1 1 24666677777777777777777666554
No 142
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.02 E-value=1.5e+02 Score=28.20 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 001303 1041 REKIRTKLTETQKQREKLEKIINA 1064 (1104)
Q Consensus 1041 ~~kL~kkl~kl~k~i~~l~~kl~n 1064 (1104)
...|+++++.+++++..+++.+..
T Consensus 8 ~~~l~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 8 EVAPQAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777776653
No 143
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.92 E-value=2.1e+02 Score=26.01 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIIN 1063 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~ 1063 (1104)
...++.+|+.++..+..++.+|...+.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345566666666666666666665444
No 144
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.70 E-value=75 Score=30.78 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1075 IQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1075 v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
-.+.-++++.+++.++.+++..+...
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556778888999999988877653
No 145
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.18 E-value=31 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1043 KIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1043 kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
+.+++++.+..+|++++.++..=. ..-+.+++-..+-.++..+..++..+++.|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le-~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQ-TQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888877766311 011333333345567777777777777776654
No 146
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=25.50 E-value=1.9e+02 Score=26.83 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhh
Q 001303 1048 LTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEI--------DFFENESNRLG 1101 (1104)
Q Consensus 1048 l~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el--------~~i~~~l~~l~ 1101 (1104)
+..++.-+-.+++.|..+.|.++++++.++..+..+.+++.=| +.|++.++.|+
T Consensus 20 rN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~ 81 (120)
T 2p32_A 20 HMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLE 81 (120)
T ss_dssp HHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 3566667777788887666888899888887777777665333 34555555554
No 147
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.18 E-value=1.3e+02 Score=28.53 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENES 1097 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l 1097 (1104)
-.+|+.+|+.++.-+|..+++.++.|.. +..-+.-+.-+-.||.++++.++.-....
T Consensus 58 HQKEi~~Lrae~~~~QRn~~K~~~~Lkr----n~~qQnQQSlDiRKLrELEADLKEKDsMV 114 (167)
T 4gkw_A 58 HQKEIGKLRAELGTAQRNLEKADQLLKR----NSQQQNQQSLDMRKLGELEADLKEKDSMV 114 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh----hhHHHhHhhhhHHHHHHHHhHHhhhhHHH
Confidence 3578888888888888888887777652 22334455667778888887776544433
No 148
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.14 E-value=1.3e+02 Score=26.13 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--cCccccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001303 1041 REKIRTKLTETQKQREKLEKIINA--PGYQEKVPSRIQ----EDNAAKLAKLLQEIDFFENESNRLG 1101 (1104)
Q Consensus 1041 ~~kL~kkl~kl~k~i~~l~~kl~n--~~f~~kaP~~v~----e~~~~Kl~~~~~el~~i~~~l~~l~ 1101 (1104)
+++|++++...++++.-.+.||.. ..| ++-|.+|- ...+.-...++.+|..++..|+..-
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~-e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV-ELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555432 123 55666663 4445555667777777777776543
No 149
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.92 E-value=1.8e+02 Score=27.22 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENE 1096 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~ 1096 (1104)
..+|+.+|..+|++++..+..+..+ -..+++.+-....+.+..+|+++...
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~r---------gd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLV---------EAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTT---------TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776666655554433 33445555555555666666555543
No 150
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.54 E-value=1.8e+02 Score=33.29 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNR 1099 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~ 1099 (1104)
+.++.+...+..+++.++.+...+.+.+.. +..++ .++-.++..++.++++.+++.+..
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPK-----APPEE-KEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999885 22222 223334444444444444444433
No 151
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.10 E-value=35 Score=22.81 Aligned_cols=21 Identities=5% Similarity=0.300 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001303 1037 IEAEREKIRTKLTETQKQREK 1057 (1104)
Q Consensus 1037 ~~~E~~kL~kkl~kl~k~i~~ 1057 (1104)
+++...||+|+..|++.++.+
T Consensus 6 ldanvkrlekevgklegevar 26 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHhhhhhhhhh
Confidence 456677888888887777654
No 152
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.00 E-value=2e+02 Score=25.04 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1035 VDIEAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1035 vd~~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
-+++.-+..|+-+++..+..|+.|.. ++-+-...+..++.++..+.+.++.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~--------------~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSE--------------ALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667778888888888888888776 4445566667777777777766665543
No 153
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.36 E-value=1.3e+02 Score=27.48 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHH
Q 001303 1048 LTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQ 1088 (1104)
Q Consensus 1048 l~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~ 1088 (1104)
+..++.-+-.+++.|..+.|.++++++.++..+..+.+++.
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~ 46 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIIS 46 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 35566667777777765567788888877777777766553
No 154
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.08 E-value=2.1e+02 Score=25.85 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1038 EAEREKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1038 ~~E~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
+.++.-|.+++..++.++++++..+..- ..-.+....+..+.+.+.+.+...|..|+.
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a-------~~kLe~~ek~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEA-------QEKLEQAEKKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455556666666666666555554411 112344566677788888888888877753
No 155
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.79 E-value=2.5e+02 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1073 SRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1073 ~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+-++..++.+..++.++.+....|..|++
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445667778888888888888888887764
No 156
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.61 E-value=3.6e+02 Score=25.56 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1041 REKIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1041 ~~kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
++.|+++++.++.++..++.-+.+-.=...+-..+.+.-+.+++.-++|+++.+..+...
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888899999999988886333445666778888999999999998888777543
No 157
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.84 E-value=2.6e+02 Score=25.58 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--cCccccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 001303 1039 AEREKIRTKLTETQKQREKLEKIINA--PGYQEKVPSRIQ----EDNAAKLAKLLQEIDFFENESNRL 1100 (1104)
Q Consensus 1039 ~E~~kL~kkl~kl~k~i~~l~~kl~n--~~f~~kaP~~v~----e~~~~Kl~~~~~el~~i~~~l~~l 1100 (1104)
..+++|++++...++++.-.+.||.. ..| ++-|.+|. +..+.-...++.+|..++.+|+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~-E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAV-EVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666643 233 56666663 444555566777777777777654
No 158
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.81 E-value=49 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001303 1043 KIRTKLTETQKQREKLEKIINAPGYQEKVPSRIQEDNAAKLAKLLQEIDFFENESNRLGN 1102 (1104)
Q Consensus 1043 kL~kkl~kl~k~i~~l~~kl~n~~f~~kaP~~v~e~~~~Kl~~~~~el~~i~~~l~~l~~ 1102 (1104)
.+..++..+...++.++.+++. .....+.+.+.++..|++.+...|++++.
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaa---------a~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQAD---------LSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH---------SCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777763 36777889999999999999999999864
Done!